Citrus Sinensis ID: 048729

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MEQLLLPNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSVS
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHcccccEEEEccEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHccccccccHHHHHHHcccccHHHEEEEEEEEEEEEEEEEEEEccccccccHHHHHHHcccccccccccEEEEEcccccccccccccEEcEEEEEcccccccccccHHHHHHHHccccccccccEEEEcccccEEEEcccccEEEEccccccHHHHHHHHcccccccEEEEEEccccccccEEEEEEEEEccccccccccHHHHHHHHHccccccccccEEEEccccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHccccEEEEEcccEEccEEEEcccccHHHHHHHHccccccEEEEEcccccHHHHHHHcccccccEEEEEccccccccccHHHHHHHHHHcccEEEEEccccccccccccccccccccccccccccEEEEEccccccEcccccccEEEEEEEcccccccccccHHHHHHHEcccccEEEEEEEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
meqlllpnsanstplttLGFLERAAAaytdcpslvynnttytwsETHRRCLQVASSLssvgiqrghvvsvvapnvpsmyelqfgvpmsgAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARqgvktvglaevdvvnpetgesvkrdgvSLGEVVLRGGcvtvgyfkdkeatrrcisdngwfytgdigvmhadgyveikdRSKDVIISGGENICSAEVESVLYSITAVNEaavvarpdmfwgeipCAFVSLKrdleltkkptEKEIIEYCRArlprymvprkvvfseelpktstgKIQKYLLREFAKSVS
Flexible Loop (DISEMBL)
meqlllpnsanstplTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARQgvktvglaevdvvnpetgesvkrdgvslgevvLRGGCVtvgyfkdkeatrrcisdngwFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKrdleltkkptekeiieycrarlprymvprkvvfseelpktstgkiqKYLLREFAKSVS
Low Complexity Region (SEG)
MEQLLLPNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSVS
Disordered region (IsUnstruct)
**************LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELP****GKIQKYLL********
Disordered Region (DISOPRED)
MEQLLLPNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS**
Disordered Region (DISEMBL)
MEQLLLPNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSVS
Disordered Region (DISPRO)
****LLPNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQLLLPNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q9LPK6	550	Probable acyl-activating	yes	no	0.581	0.349	0.671	1e-76
Q9LPK7	549	Probable acyl-activating	no	no	0.593	0.357	0.646	3e-73
Q9FFE6	552	Probable acyl-activating	no	no	0.581	0.347	0.641	6e-73
Q9FFE9	550	Probable acyl-activating	no	no	0.581	0.349	0.630	5e-72
Q9LQS1	544	Probable acyl-activating	no	no	0.581	0.352	0.656	6e-72
O80658	545	Probable acyl-activating	no	no	0.581	0.352	0.625	6e-70
F4HUK6	556	Probable acyl-activating	no	no	0.572	0.339	0.564	3e-58
Q9SEY5	603	Probable acyl-activating	no	no	0.593	0.325	0.569	9e-57
Q9C8D4	572	Butyrate--CoA ligase AAE1	no	no	0.584	0.337	0.553	9e-55
Q9SS00	578	Probable acyl-activating	no	no	0.587	0.335	0.532	2e-54

>sp|Q9LPK6|AEE9_ARATH Probable acyl-activating enzyme 9 OS=Arabidopsis thaliana GN=AEE9 PE=2 SV=1

 Score =  287 bits (734), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 131/195 (67%), Positives = 162/195 (83%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
           +RARLK+RQGV+T+G AEVDV +P TG+SV+ DGVS+GE+VL+GG V +GY+KD E T  
Sbjct: 355 ERARLKSRQGVRTIGFAEVDVRDPRTGKSVEHDGVSVGEIVLKGGSVMLGYYKDPEGTAA 414

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
           C+ ++GWFY+GD+GV+H DGY+E+KDRSKDVII GGENI SAEVE+VLY+   V EAAVV
Sbjct: 415 CMREDGWFYSGDVGVIHEDGYLEVKDRSKDVIICGGENISSAEVETVLYTNPVVKEAAVV 474

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
           A+PD  WGE PCAFVSLK D       TE+EI E+C+ RLP+YMVPRKV+F EELPKTST
Sbjct: 475 AKPDKMWGETPCAFVSLKYDSNGNGLVTEREIREFCKTRLPKYMVPRKVIFQEELPKTST 534

Query: 315 GKIQKYLLREFAKSV 329
           GKIQK+LLR+ AKS+
Sbjct: 535 GKIQKFLLRQMAKSL 549

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q9LPK7|AEE10_ARATH Probable acyl-activating enzyme 10 OS=Arabidopsis thaliana GN=AEE10 PE=2 SV=1

 Score =  275 bits (704), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 128/198 (64%), Positives = 162/198 (81%), Gaps = 2/198 (1%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
           +RARLK+RQGV+T+G  EVDV + +TG+SVK DGVS+GE+V RG  V +GY+KD + T  
Sbjct: 352 ERARLKSRQGVRTLGFTEVDVRDRKTGKSVKHDGVSVGEIVFRGSSVMLGYYKDPQGTAA 411

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
           C+ ++GWFY+GDIGV+H DGY+EIKDRSKDVII GGENI SAE+E+VLY+   V EAAVV
Sbjct: 412 CMREDGWFYSGDIGVIHKDGYLEIKDRSKDVIICGGENISSAEIETVLYTNPVVKEAAVV 471

Query: 255 ARPDMFWGEIPCAFVSLKRDL--ELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKT 312
           A+PD  WGE PCAFVSLK D   + +   TE+EI E+C+ +LP+YMVPRKV+F EELPKT
Sbjct: 472 AKPDKMWGETPCAFVSLKCDNNGDGSVPVTEREIREFCKTKLPKYMVPRKVIFQEELPKT 531

Query: 313 STGKIQKYLLREFAKSVS 330
           STGKIQK+LLR+ AK++S
Sbjct: 532 STGKIQKFLLRQMAKTLS 549

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FFE6|AAE5_ARATH Probable acyl-activating enzyme 5, peroxisomal OS=Arabidopsis thaliana GN=AAE5 PE=2 SV=1

 Score =  274 bits (701), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 125/195 (64%), Positives = 161/195 (82%), Gaps = 3/195 (1%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
            RARLKARQGV+TVG  E+DVV+PE+G SV+R+G ++GE+V+RG  + +GY KD   T +
Sbjct: 353 DRARLKARQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTEK 412

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
            +  NGWFYTGD+GV+H+DGY+EIKDRSKD+II+GGEN+ S EVE+VLY+  AVNE AVV
Sbjct: 413 ALK-NGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTNPAVNEVAVV 471

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
           ARPD+FWGE PCAFVSLK    LT++PTE E+IEYCR ++P+YMVP+ V F +ELPKTST
Sbjct: 472 ARPDVFWGETPCAFVSLKSG--LTQRPTEVEMIEYCRKKMPKYMVPKTVSFVDELPKTST 529

Query: 315 GKIQKYLLREFAKSV 329
           GK+ K++LRE AK +
Sbjct: 530 GKVMKFVLREIAKKM 544

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FFE9|AAE6_ARATH Probable acyl-activating enzyme 6 OS=Arabidopsis thaliana GN=AAE6 PE=2 SV=1

 Score =  271 bits (693), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 123/195 (63%), Positives = 160/195 (82%), Gaps = 3/195 (1%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
            RARLKARQGV+TVG  E+DVV+PE+G SV+R+G ++GE+V+RG  V +GY KD   T +
Sbjct: 353 DRARLKARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTEK 412

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
            +  NGWFYTGD+GV+H+DGY+EIKDRSKD+II+GGEN+ S EVE+VLY+I AVNE AVV
Sbjct: 413 ALK-NGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEVAVV 471

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
           ARPD FWGE PCAFVSLK     + KPTE+E++EYCR ++P+YMVP+ V F +ELPK+ST
Sbjct: 472 ARPDEFWGETPCAFVSLKNG--FSGKPTEEELMEYCRKKMPKYMVPKTVSFMDELPKSST 529

Query: 315 GKIQKYLLREFAKSV 329
           GK+ K++LR+ AK +
Sbjct: 530 GKVTKFVLRDIAKKM 544

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LQS1|AAE8_ARATH Probable acyl-activating enzyme 8 OS=Arabidopsis thaliana GN=AAE8 PE=2 SV=1

 Score =  271 bits (693), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 128/195 (65%), Positives = 160/195 (82%), Gaps = 3/195 (1%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
            +A+LK+RQGV+TVG +E+DVV+PE+G SV+RDG ++GE+VLRG  + +GY K+   T+ 
Sbjct: 353 DQAQLKSRQGVRTVGFSEIDVVDPESGRSVERDGETVGEIVLRGSSIMLGYLKNPIGTQN 412

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
               NGWF+TGD+GV+H DGY+EIKDRSKDVIISGGEN+ S EVE+VLY+  AVNEAAVV
Sbjct: 413 SFK-NGWFFTGDLGVIHGDGYLEIKDRSKDVIISGGENVSSVEVEAVLYTNPAVNEAAVV 471

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
           ARPD FWGE PCAFVSLK    LT+KPT+KEIIEYC+ ++PRYM P+ V F EELPKTST
Sbjct: 472 ARPDEFWGETPCAFVSLKPG--LTRKPTDKEIIEYCKYKMPRYMAPKTVSFLEELPKTST 529

Query: 315 GKIQKYLLREFAKSV 329
           GKI K LL+E AK++
Sbjct: 530 GKIIKSLLKEIAKNM 544

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|O80658|AAE4_ARATH Probable acyl-activating enzyme 4 OS=Arabidopsis thaliana GN=AEE4 PE=2 SV=1

 Score =  264 bits (675), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 122/195 (62%), Positives = 154/195 (78%), Gaps = 3/195 (1%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
           +RA+ K+RQG++T   AEVDV +P +G+SVK DG ++GE+V RGG V +GY+KD E T  
Sbjct: 353 ERAKQKSRQGIRTAVFAEVDVRDPISGKSVKHDGATVGEIVFRGGSVMLGYYKDPEGTAA 412

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
            + ++GWFYTGDIGVMH DGY+E+KDRSKDV+I GGENI S E+E+VLY+  A+ EAAVV
Sbjct: 413 SMREDGWFYTGDIGVMHPDGYLEVKDRSKDVVICGGENISSTELEAVLYTNPAIKEAAVV 472

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
           A+PD  WGE PCAFVSLK         TE+EI E+C+ +LP+YMVPR VVF EELPKTST
Sbjct: 473 AKPDKMWGETPCAFVSLKYH---DGSVTEREIREFCKTKLPKYMVPRNVVFLEELPKTST 529

Query: 315 GKIQKYLLREFAKSV 329
           GKIQK+LLR+ AKS+
Sbjct: 530 GKIQKFLLRQMAKSL 544

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|F4HUK6|AAE1_ARATH Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1

 Score =  225 bits (574), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 142/195 (72%), Gaps = 6/195 (3%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
           ++A++KARQGV  +GL E+ V +P T  ++  DGV++GEVV RG  V  GY K+ EAT+ 
Sbjct: 357 EQAKMKARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKE 416

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
                GWF++GD+GV H DGY+E+KDRSKD+IISGGENI S EVES L++   V EAAVV
Sbjct: 417 AFK-GGWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAVV 475

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
           ARPD +WGE  CAFV LK       K + +E+I YCR RLP YM PR +VF E+LPKTST
Sbjct: 476 ARPDEYWGETACAFVKLKDG----SKASAEELISYCRDRLPHYMAPRSIVF-EDLPKTST 530

Query: 315 GKIQKYLLREFAKSV 329
           GK+QK++LR  AK++
Sbjct: 531 GKVQKFVLRTKAKAL 545

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SEY5|AAE2_ARATH Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1

 Score =  221 bits (562), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 146/202 (72%), Gaps = 6/202 (2%)

Query: 128 EALSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFK 187
           ++LSL  +R +LKARQGV+ +GL  +DV +P T E+V  DG+++GEV+ RG  V  GYFK
Sbjct: 405 DSLSL-EERTKLKARQGVQHLGLEGLDVKDPLTMETVPDDGLTMGEVMFRGNTVMSGYFK 463

Query: 188 DKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITA 247
           D EATR+    + WF++GD+ V + DGY+EIKDR KDVIISGGENI S EVE VL S  A
Sbjct: 464 DIEATRKAFEGD-WFHSGDLAVKYPDGYIEIKDRLKDVIISGGENISSVEVERVLCSHQA 522

Query: 248 VNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSE 307
           V EAAVVARPD  WG+ PC FV LK   + T KP  +EII +CR  LP YM P+ +VF  
Sbjct: 523 VLEAAVVARPDHHWGQTPCGFVKLKEGFD-TIKP--EEIIGFCRDHLPHYMAPKTIVFG- 578

Query: 308 ELPKTSTGKIQKYLLREFAKSV 329
           ++PKTSTGK+QKYLLR+ A  +
Sbjct: 579 DIPKTSTGKVQKYLLRKKADEM 600

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C8D4|AAE11_ARATH Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1

 Score =  214 bits (544), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 137/195 (70%), Gaps = 2/195 (1%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
           Q+  L+ RQGV+ + LA+VDV N +T ESV RDG ++GE+V++G  +  GY K+ +AT  
Sbjct: 356 QQIELQQRQGVRNLTLADVDVKNTKTLESVPRDGKTMGEIVIKGSSLMKGYLKNPKATSE 415

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
               +GW  TGDIGV+H DGYVEIKDRSKD+IISGGENI S EVE VLY    V EAAVV
Sbjct: 416 AFK-HGWLNTGDIGVIHPDGYVEIKDRSKDIIISGGENISSIEVEKVLYMYQEVLEAAVV 474

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
           A P   WGE PCAFV LK+  E     +E ++I+YCR  +P +M P+KVVF +ELPK S 
Sbjct: 475 AMPHPLWGETPCAFVVLKKGEEGLVT-SEGDLIKYCRENMPHFMCPKKVVFFQELPKNSN 533

Query: 315 GKIQKYLLREFAKSV 329
           GKI K  LR+ AK++
Sbjct: 534 GKILKSKLRDIAKAL 548

Butyrate--CoA ligase that is active in vitro with medium-chain fatty acids, with a preference for hexanoate and octanoate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9SS00|AAE12_ARATH Probable acyl-activating enzyme 12, peroxisomal OS=Arabidopsis thaliana GN=AAE12 PE=2 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/201 (53%), Positives = 136/201 (67%), Gaps = 7/201 (3%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
           Q+  LKARQG+  +GL EVDV N ET ESV RDG ++GE+V++G  +  GY K+ +AT  
Sbjct: 356 QQMELKARQGLSILGLTEVDVRNKETQESVPRDGKTMGEIVMKGSSIMKGYLKNPKATYE 415

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
               +GW  +GD+GV+H DG+VEIKDRSKD+IISGGENI S EVE+++Y    V E AVV
Sbjct: 416 AFK-HGWLNSGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENIIYKYPKVLETAVV 474

Query: 255 ARPDMFWGEIPCAFVSLKR------DLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEE 308
           A P   WGE PCAFV L++      D E      E+++IEYCR  LP +M PRKVVF +E
Sbjct: 475 AMPHPTWGETPCAFVVLEKGETNNEDREDKLVTKERDLIEYCRENLPHFMCPRKVVFLDE 534

Query: 309 LPKTSTGKIQKYLLREFAKSV 329
           LPK   GKI K  LR+ AK +
Sbjct: 535 LPKNGNGKILKPKLRDIAKGL 555

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
296083814	509	unnamed protein product [Vitis vinifera]	0.584	0.379	0.723	2e-80
359476425	588	PREDICTED: medium-chain-fatty-acid--CoA	0.584	0.328	0.723	2e-80
224134905	553	predicted protein [Populus trichocarpa]	0.596	0.356	0.716	7e-80
224118022	554	acyl:coa ligase acetate-coa synthetase-l	0.596	0.355	0.696	7e-78
255561466	556	AMP dependent ligase, putative [Ricinus	0.584	0.347	0.697	1e-77
224127758	550	acyl:coa ligase acetate-coa synthetase-l	0.587	0.352	0.698	2e-77
356500978	549	PREDICTED: medium-chain-fatty-acid--CoA	0.584	0.351	0.712	2e-77
225466183	549	PREDICTED: putative acyl-CoA synthetase	0.590	0.355	0.703	4e-77
296083811	449	unnamed protein product [Vitis vinifera]	0.590	0.434	0.703	4e-77
147800064	537	hypothetical protein VITISV_042774 [Viti	0.590	0.363	0.698	2e-76

>gi|296083814|emb|CBI24031.3| unnamed protein product [Vitis vinifera]

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/195 (72%), Positives = 171/195 (87%), Gaps = 2/195 (1%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
           +RARLK+RQGV+TVG+ EVDV++P +G SVKRDG SLGE+VLRGGC+ +GY KD + T +
Sbjct: 288 ERARLKSRQGVRTVGMTEVDVLDPGSGLSVKRDGSSLGEIVLRGGCIMLGYLKDPKGTSK 347

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
            ++D+GWF+TGD+GVMH+DGY+EIKDRSKDVIISGGEN+ S EVESVLY+  AVNEAAVV
Sbjct: 348 SLTDDGWFFTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYTHPAVNEAAVV 407

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
           ARPD FWGE PCAFVSLK   E T++PTEKEI+EYCRAR+P YMVP+ VVF EELPKTST
Sbjct: 408 ARPDDFWGETPCAFVSLKP--ERTEQPTEKEIMEYCRARMPHYMVPKTVVFEEELPKTST 465

Query: 315 GKIQKYLLREFAKSV 329
           GKIQK++LRE AK++
Sbjct: 466 GKIQKFVLRETAKAM 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476425|ref|XP_002263877.2| PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera]

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/195 (72%), Positives = 171/195 (87%), Gaps = 2/195 (1%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
           +RARLK+RQGV+TVG+ EVDV++P +G SVKRDG SLGE+VLRGGC+ +GY KD + T +
Sbjct: 388 ERARLKSRQGVRTVGMTEVDVLDPGSGLSVKRDGSSLGEIVLRGGCIMLGYLKDPKGTSK 447

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
            ++D+GWF+TGD+GVMH+DGY+EIKDRSKDVIISGGEN+ S EVESVLY+  AVNEAAVV
Sbjct: 448 SLTDDGWFFTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYTHPAVNEAAVV 507

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
           ARPD FWGE PCAFVSLK   E T++PTEKEI+EYCRAR+P YMVP+ VVF EELPKTST
Sbjct: 508 ARPDDFWGETPCAFVSLKP--ERTEQPTEKEIMEYCRARMPHYMVPKTVVFEEELPKTST 565

Query: 315 GKIQKYLLREFAKSV 329
           GKIQK++LRE AK++
Sbjct: 566 GKIQKFVLRETAKAM 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134905|ref|XP_002321934.1| predicted protein [Populus trichocarpa] gi|222868930|gb|EEF06061.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (776), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 144/201 (71%), Positives = 168/201 (83%), Gaps = 4/201 (1%)

Query: 131 SLFP--QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKD 188
           SLFP  +RARLKARQGV+T+G+ EVDVV+P TG SVKRDG +LGE+VLRGGC+ +GY KD
Sbjct: 347 SLFPATERARLKARQGVRTIGMNEVDVVDPITGTSVKRDGSTLGEIVLRGGCIMLGYLKD 406

Query: 189 KEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAV 248
             AT +C+++NGWFYTGD+GVMH DGY+EIKDRSKDVIISGGEN+ S EVESVLY+   +
Sbjct: 407 PVATAKCMTENGWFYTGDVGVMHPDGYLEIKDRSKDVIISGGENLSSVEVESVLYTFPDI 466

Query: 249 NEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEE 308
           NEAAVVARPD FWGE PCAFV+LK      K  TEKEIIEYCRARLP YMVP+ VV +EE
Sbjct: 467 NEAAVVARPDEFWGETPCAFVTLKE--ACCKSTTEKEIIEYCRARLPHYMVPKTVVVTEE 524

Query: 309 LPKTSTGKIQKYLLREFAKSV 329
           LPKT+TGKIQK LLR+ AK +
Sbjct: 525 LPKTATGKIQKALLRDMAKDM 545

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118022|ref|XP_002331538.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] gi|222873762|gb|EEF10893.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa]

 Score =  296 bits (759), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 140/201 (69%), Positives = 168/201 (83%), Gaps = 4/201 (1%)

Query: 131 SLFP--QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKD 188
           +LFP  +RARLKARQGV+TVG+ EVDVV+P TG SVKRDG++LGE+VLRGGC+ +GY KD
Sbjct: 348 NLFPATERARLKARQGVRTVGMTEVDVVDPVTGMSVKRDGLTLGEIVLRGGCIMLGYLKD 407

Query: 189 KEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAV 248
             AT +C+++NGWF TGD+GVMH DGY+EIKDRSKDVIISGGEN+ S EVESVLY+   +
Sbjct: 408 PVATAKCMTENGWFCTGDVGVMHPDGYLEIKDRSKDVIISGGENLSSVEVESVLYTFPDI 467

Query: 249 NEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEE 308
           NEAAVVARPD FWGE PCAFVSLK      + PTEKEIIE+CR +LP YMVP+ VV  E+
Sbjct: 468 NEAAVVARPDEFWGETPCAFVSLKE--ACCRIPTEKEIIEHCRGKLPHYMVPKTVVVKEK 525

Query: 309 LPKTSTGKIQKYLLREFAKSV 329
           LPKTSTGKIQK +LR+ AK++
Sbjct: 526 LPKTSTGKIQKAVLRDMAKAM 546

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561466|ref|XP_002521743.1| AMP dependent ligase, putative [Ricinus communis] gi|223538956|gb|EEF40553.1| AMP dependent ligase, putative [Ricinus communis]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 136/195 (69%), Positives = 164/195 (84%), Gaps = 2/195 (1%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
           +RARLKARQGV+  G  E+DV++P+TG SVKRDG+SLGE+VLRGGCV +GY KD + T +
Sbjct: 356 ERARLKARQGVRIAGFTEIDVIDPKTGLSVKRDGLSLGEIVLRGGCVMMGYLKDPDGTSK 415

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
           C+ D+GWFYTGD+GVMH DGY+EIKDRSKDVIISGGENI S EVESVLYS   VNEAAVV
Sbjct: 416 CLKDDGWFYTGDVGVMHPDGYLEIKDRSKDVIISGGENISSVEVESVLYSNPVVNEAAVV 475

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
           ARPD +WGE PCAFVSL+      +K +EK+IIEYCR ++P YMVP+ VVF EELPKTST
Sbjct: 476 ARPDEYWGETPCAFVSLRDGAR--EKVSEKDIIEYCREKMPHYMVPKTVVFKEELPKTST 533

Query: 315 GKIQKYLLREFAKSV 329
           GKIQK++LR+ AK++
Sbjct: 534 GKIQKFVLRDIAKAM 548

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127758|ref|XP_002329170.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] gi|222870951|gb|EEF08082.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/199 (69%), Positives = 166/199 (83%), Gaps = 5/199 (2%)

Query: 133 FP--QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKE 190
           FP  +RARLKARQGVK VG  E+DV+ PE+G+SVKRDGV+LGEVVL+GGC+ +GY KD  
Sbjct: 347 FPPSERARLKARQGVKIVGFTEIDVLEPESGKSVKRDGVALGEVVLKGGCIMLGYLKDPT 406

Query: 191 ATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNE 250
            T +C+ D GWFYTGD+GVMH DGY+EIKDRSKDVIISGGENI S E+ESVLY+  AVNE
Sbjct: 407 GTSKCMKD-GWFYTGDVGVMHQDGYLEIKDRSKDVIISGGENISSVEIESVLYTHPAVNE 465

Query: 251 AAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELP 310
           AAVVARPD FWGE PCAFV LK    LT+KP EK++I++CR ++P YMVP+ VVF +ELP
Sbjct: 466 AAVVARPDEFWGETPCAFVGLKDG--LTQKPGEKDMIDFCREKMPHYMVPKTVVFKDELP 523

Query: 311 KTSTGKIQKYLLREFAKSV 329
           KTSTGKIQK++LR  AKS+
Sbjct: 524 KTSTGKIQKFVLRGIAKSM 542

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500978|ref|XP_003519307.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/195 (71%), Positives = 163/195 (83%), Gaps = 2/195 (1%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
           +RARLKARQGV+TV +AEVDVV P TGESVKRDGVS+GEVV++GGCV +GY KD   T  
Sbjct: 349 ERARLKARQGVRTVAMAEVDVVGP-TGESVKRDGVSIGEVVMKGGCVMLGYLKDPSGTAS 407

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
           C   NGWFYTGD+GVMH DGY+EIKDRSKDVIISGGEN+ S EVES+LY   AVNEAAVV
Sbjct: 408 CFK-NGWFYTGDVGVMHEDGYLEIKDRSKDVIISGGENLSSVEVESILYGHPAVNEAAVV 466

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
           ARP  +WGE PCAFVSLK+ ++  +KPTEK+IIEYCR  +P YMVP+ VVF +ELPKTST
Sbjct: 467 ARPHEYWGETPCAFVSLKKGIKEKEKPTEKDIIEYCRDNMPHYMVPKTVVFKDELPKTST 526

Query: 315 GKIQKYLLREFAKSV 329
           GKIQK++LR+ AK +
Sbjct: 527 GKIQKFVLRQIAKEM 541

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466183|ref|XP_002263801.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Vitis vinifera]

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 140/199 (70%), Positives = 164/199 (82%), Gaps = 4/199 (2%)

Query: 133 FP--QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKE 190
           FP  +RAR+KARQGV+TV + EVDVV+P++G SVKRDG SLGE+VLRG C+ +GY KD E
Sbjct: 345 FPASERARVKARQGVRTVVMTEVDVVDPKSGVSVKRDGSSLGEIVLRGACIMLGYLKDPE 404

Query: 191 ATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNE 250
            T +C+S  GW YTGD+ VMH DGY+EIKDRSKDVIISGGEN+ S EVESVLY+  AVNE
Sbjct: 405 GTSKCMSKEGWLYTGDVAVMHPDGYIEIKDRSKDVIISGGENLSSVEVESVLYTHPAVNE 464

Query: 251 AAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELP 310
           AAVVARPD FWGE PCAFVSLK   E   KPT KE++EYCRAR+P YMVP+ VVF EELP
Sbjct: 465 AAVVARPDDFWGETPCAFVSLKP--ESPDKPTAKEMMEYCRARMPHYMVPKTVVFKEELP 522

Query: 311 KTSTGKIQKYLLREFAKSV 329
           KTSTGKIQK+ LR+ AK++
Sbjct: 523 KTSTGKIQKFKLRDIAKAM 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083811|emb|CBI24028.3| unnamed protein product [Vitis vinifera]

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 140/199 (70%), Positives = 164/199 (82%), Gaps = 4/199 (2%)

Query: 133 FP--QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKE 190
           FP  +RAR+KARQGV+TV + EVDVV+P++G SVKRDG SLGE+VLRG C+ +GY KD E
Sbjct: 245 FPASERARVKARQGVRTVVMTEVDVVDPKSGVSVKRDGSSLGEIVLRGACIMLGYLKDPE 304

Query: 191 ATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNE 250
            T +C+S  GW YTGD+ VMH DGY+EIKDRSKDVIISGGEN+ S EVESVLY+  AVNE
Sbjct: 305 GTSKCMSKEGWLYTGDVAVMHPDGYIEIKDRSKDVIISGGENLSSVEVESVLYTHPAVNE 364

Query: 251 AAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELP 310
           AAVVARPD FWGE PCAFVSLK   E   KPT KE++EYCRAR+P YMVP+ VVF EELP
Sbjct: 365 AAVVARPDDFWGETPCAFVSLKP--ESPDKPTAKEMMEYCRARMPHYMVPKTVVFKEELP 422

Query: 311 KTSTGKIQKYLLREFAKSV 329
           KTSTGKIQK+ LR+ AK++
Sbjct: 423 KTSTGKIQKFKLRDIAKAM 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800064|emb|CAN64147.1| hypothetical protein VITISV_042774 [Vitis vinifera]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 139/199 (69%), Positives = 163/199 (81%), Gaps = 4/199 (2%)

Query: 133 FP--QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKE 190
           FP  +RAR+KARQGV+TV + EVDVV+P++G SVKRDG SLGE+VLRG C+ +GY KD E
Sbjct: 333 FPASERARVKARQGVRTVVMTEVDVVDPKSGVSVKRDGSSLGEIVLRGACIMLGYLKDPE 392

Query: 191 ATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNE 250
            T +C+S  GW YTGD+ VMH DGY+EIKDRSKDVIISGGEN+ S EVESVLY+  AVNE
Sbjct: 393 GTSKCMSKEGWLYTGDVAVMHPDGYIEIKDRSKDVIISGGENLSSVEVESVLYTHPAVNE 452

Query: 251 AAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELP 310
           AAVVARPD FWGE PCAFVSLK       KPT KE++EYCRAR+P YMVP+ VVF EELP
Sbjct: 453 AAVVARPDDFWGETPCAFVSLKPGSP--DKPTAKEMMEYCRARMPHYMVPKTVVFKEELP 510

Query: 311 KTSTGKIQKYLLREFAKSV 329
           KTSTGKIQK+ LR+ AK++
Sbjct: 511 KTSTGKIQKFKLRDIAKAM 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2027032	550	AT1G21540 [Arabidopsis thalian	0.590	0.354	0.671	1.6e-117
TAIR|locus:2027012	549	AT1G21530 [Arabidopsis thalian	0.593	0.357	0.646	1.4e-116
TAIR|locus:2195950	545	AAE2 "acyl activating enzyme 2	0.581	0.352	0.625	4.9e-112
TAIR|locus:2171402	552	AAE5 "acyl activating enzyme 5	0.578	0.346	0.644	2.7e-111
TAIR|locus:2171357	550	AT5G16340 [Arabidopsis thalian	0.578	0.347	0.634	1.9e-110
TAIR|locus:2204360	544	AT1G75960 [Arabidopsis thalian	0.578	0.351	0.659	6.3e-110
TAIR|locus:2057249	603	AT2G17650 [Arabidopsis thalian	0.584	0.320	0.577	5.6e-88
TAIR|locus:2030407	556	AAE1 "acyl activating enzyme 1	0.572	0.339	0.564	3.5e-86
TAIR|locus:2013860	572	AAE11 "acyl-activating enzyme	0.584	0.337	0.553	3.5e-86
TIGR_CMR|SPO_0677	542	SPO_0677 "AMP-binding protein"	0.572	0.348	0.548	1.7e-82

TAIR|locus:2027032 AT1G21540 [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 1.6e-117, Sum P(2) = 1.6e-117
 Identities = 131/195 (67%), Positives = 162/195 (83%)

Query:   135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
             +RARLK+RQGV+T+G AEVDV +P TG+SV+ DGVS+GE+VL+GG V +GY+KD E T  
Sbjct:   355 ERARLKSRQGVRTIGFAEVDVRDPRTGKSVEHDGVSVGEIVLKGGSVMLGYYKDPEGTAA 414

Query:   195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
             C+ ++GWFY+GD+GV+H DGY+E+KDRSKDVII GGENI SAEVE+VLY+   V EAAVV
Sbjct:   415 CMREDGWFYSGDVGVIHEDGYLEVKDRSKDVIICGGENISSAEVETVLYTNPVVKEAAVV 474

Query:   255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
             A+PD  WGE PCAFVSLK D       TE+EI E+C+ RLP+YMVPRKV+F EELPKTST
Sbjct:   475 AKPDKMWGETPCAFVSLKYDSNGNGLVTEREIREFCKTRLPKYMVPRKVIFQEELPKTST 534

Query:   315 GKIQKYLLREFAKSV 329
             GKIQK+LLR+ AKS+
Sbjct:   535 GKIQKFLLRQMAKSL 549

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2027012 AT1G21530 [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 1.4e-116, Sum P(2) = 1.4e-116
 Identities = 128/198 (64%), Positives = 162/198 (81%)

Query:   135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
             +RARLK+RQGV+T+G  EVDV + +TG+SVK DGVS+GE+V RG  V +GY+KD + T  
Sbjct:   352 ERARLKSRQGVRTLGFTEVDVRDRKTGKSVKHDGVSVGEIVFRGSSVMLGYYKDPQGTAA 411

Query:   195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
             C+ ++GWFY+GDIGV+H DGY+EIKDRSKDVII GGENI SAE+E+VLY+   V EAAVV
Sbjct:   412 CMREDGWFYSGDIGVIHKDGYLEIKDRSKDVIICGGENISSAEIETVLYTNPVVKEAAVV 471

Query:   255 ARPDMFWGEIPCAFVSLKRDL--ELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKT 312
             A+PD  WGE PCAFVSLK D   + +   TE+EI E+C+ +LP+YMVPRKV+F EELPKT
Sbjct:   472 AKPDKMWGETPCAFVSLKCDNNGDGSVPVTEREIREFCKTKLPKYMVPRKVIFQEELPKT 531

Query:   313 STGKIQKYLLREFAKSVS 330
             STGKIQK+LLR+ AK++S
Sbjct:   532 STGKIQKFLLRQMAKTLS 549

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2195950 AAE2 "acyl activating enzyme 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 4.9e-112, Sum P(2) = 4.9e-112
 Identities = 122/195 (62%), Positives = 154/195 (78%)

Query:   135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
             +RA+ K+RQG++T   AEVDV +P +G+SVK DG ++GE+V RGG V +GY+KD E T  
Sbjct:   353 ERAKQKSRQGIRTAVFAEVDVRDPISGKSVKHDGATVGEIVFRGGSVMLGYYKDPEGTAA 412

Query:   195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
              + ++GWFYTGDIGVMH DGY+E+KDRSKDV+I GGENI S E+E+VLY+  A+ EAAVV
Sbjct:   413 SMREDGWFYTGDIGVMHPDGYLEVKDRSKDVVICGGENISSTELEAVLYTNPAIKEAAVV 472

Query:   255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
             A+PD  WGE PCAFVSLK         TE+EI E+C+ +LP+YMVPR VVF EELPKTST
Sbjct:   473 AKPDKMWGETPCAFVSLKYH---DGSVTEREIREFCKTKLPKYMVPRNVVFLEELPKTST 529

Query:   315 GKIQKYLLREFAKSV 329
             GKIQK+LLR+ AKS+
Sbjct:   530 GKIQKFLLRQMAKSL 544

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2171402 AAE5 "acyl activating enzyme 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
 Identities = 125/194 (64%), Positives = 161/194 (82%)

Query:   136 RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC 195
             RARLKARQGV+TVG  E+DVV+PE+G SV+R+G ++GE+V+RG  + +GY KD   T + 
Sbjct:   354 RARLKARQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTEKA 413

Query:   196 ISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA 255
             +  NGWFYTGD+GV+H+DGY+EIKDRSKD+II+GGEN+ S EVE+VLY+  AVNE AVVA
Sbjct:   414 LK-NGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTNPAVNEVAVVA 472

Query:   256 RPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTG 315
             RPD+FWGE PCAFVSLK  L  T++PTE E+IEYCR ++P+YMVP+ V F +ELPKTSTG
Sbjct:   473 RPDVFWGETPCAFVSLKSGL--TQRPTEVEMIEYCRKKMPKYMVPKTVSFVDELPKTSTG 530

Query:   316 KIQKYLLREFAKSV 329
             K+ K++LRE AK +
Sbjct:   531 KVMKFVLREIAKKM 544

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

TAIR|locus:2171357 AT5G16340 [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
 Identities = 123/194 (63%), Positives = 160/194 (82%)

Query:   136 RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC 195
             RARLKARQGV+TVG  E+DVV+PE+G SV+R+G ++GE+V+RG  V +GY KD   T + 
Sbjct:   354 RARLKARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTEKA 413

Query:   196 ISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA 255
             +  NGWFYTGD+GV+H+DGY+EIKDRSKD+II+GGEN+ S EVE+VLY+I AVNE AVVA
Sbjct:   414 LK-NGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEVAVVA 472

Query:   256 RPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTG 315
             RPD FWGE PCAFVSLK     + KPTE+E++EYCR ++P+YMVP+ V F +ELPK+STG
Sbjct:   473 RPDEFWGETPCAFVSLKNGF--SGKPTEEELMEYCRKKMPKYMVPKTVSFMDELPKSSTG 530

Query:   316 KIQKYLLREFAKSV 329
             K+ K++LR+ AK +
Sbjct:   531 KVTKFVLRDIAKKM 544

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2204360 AT1G75960 [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
 Identities = 128/194 (65%), Positives = 160/194 (82%)

Query:   136 RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC 195
             +A+LK+RQGV+TVG +E+DVV+PE+G SV+RDG ++GE+VLRG  + +GY K+   T+  
Sbjct:   354 QAQLKSRQGVRTVGFSEIDVVDPESGRSVERDGETVGEIVLRGSSIMLGYLKNPIGTQNS 413

Query:   196 ISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA 255
                NGWF+TGD+GV+H DGY+EIKDRSKDVIISGGEN+ S EVE+VLY+  AVNEAAVVA
Sbjct:   414 FK-NGWFFTGDLGVIHGDGYLEIKDRSKDVIISGGENVSSVEVEAVLYTNPAVNEAAVVA 472

Query:   256 RPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTG 315
             RPD FWGE PCAFVSLK  L  T+KPT+KEIIEYC+ ++PRYM P+ V F EELPKTSTG
Sbjct:   473 RPDEFWGETPCAFVSLKPGL--TRKPTDKEIIEYCKYKMPRYMAPKTVSFLEELPKTSTG 530

Query:   316 KIQKYLLREFAKSV 329
             KI K LL+E AK++
Sbjct:   531 KIIKSLLKEIAKNM 544

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2057249 AT2G17650 [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 5.6e-88, Sum P(2) = 5.6e-88
 Identities = 115/199 (57%), Positives = 145/199 (72%)

Query:   128 EALSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFK 187
             ++LSL  +R +LKARQGV+ +GL  +DV +P T E+V  DG+++GEV+ RG  V  GYFK
Sbjct:   405 DSLSL-EERTKLKARQGVQHLGLEGLDVKDPLTMETVPDDGLTMGEVMFRGNTVMSGYFK 463

Query:   188 DKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITA 247
             D EATR+   +  WF++GD+ V + DGY+EIKDR KDVIISGGENI S EVE VL S  A
Sbjct:   464 DIEATRKAF-EGDWFHSGDLAVKYPDGYIEIKDRLKDVIISGGENISSVEVERVLCSHQA 522

Query:   248 VNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSE 307
             V EAAVVARPD  WG+ PC FV LK   + T KP  +EII +CR  LP YM P+ +VF +
Sbjct:   523 VLEAAVVARPDHHWGQTPCGFVKLKEGFD-TIKP--EEIIGFCRDHLPHYMAPKTIVFGD 579

Query:   308 ELPKTSTGKIQKYLLREFA 326
              +PKTSTGK+QKYLLR+ A
Sbjct:   580 -IPKTSTGKVQKYLLRKKA 597

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2030407 AAE1 "acyl activating enzyme 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.5e-86, Sum P(2) = 3.5e-86
 Identities = 110/195 (56%), Positives = 142/195 (72%)

Query:   135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
             ++A++KARQGV  +GL E+ V +P T  ++  DGV++GEVV RG  V  GY K+ EAT+ 
Sbjct:   357 EQAKMKARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKE 416

Query:   195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
                  GWF++GD+GV H DGY+E+KDRSKD+IISGGENI S EVES L++   V EAAVV
Sbjct:   417 AFK-GGWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAVV 475

Query:   255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
             ARPD +WGE  CAFV LK       K + +E+I YCR RLP YM PR +VF E+LPKTST
Sbjct:   476 ARPDEYWGETACAFVKLKDG----SKASAEELISYCRDRLPHYMAPRSIVF-EDLPKTST 530

Query:   315 GKIQKYLLREFAKSV 329
             GK+QK++LR  AK++
Sbjct:   531 GKVQKFVLRTKAKAL 545

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016208 "AMP binding" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2013860 AAE11 "acyl-activating enzyme 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 3.5e-86, Sum P(2) = 3.5e-86
 Identities = 108/195 (55%), Positives = 137/195 (70%)

Query:   135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
             Q+  L+ RQGV+ + LA+VDV N +T ESV RDG ++GE+V++G  +  GY K+ +AT  
Sbjct:   356 QQIELQQRQGVRNLTLADVDVKNTKTLESVPRDGKTMGEIVIKGSSLMKGYLKNPKATSE 415

Query:   195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
                 +GW  TGDIGV+H DGYVEIKDRSKD+IISGGENI S EVE VLY    V EAAVV
Sbjct:   416 AFK-HGWLNTGDIGVIHPDGYVEIKDRSKDIIISGGENISSIEVEKVLYMYQEVLEAAVV 474

Query:   255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
             A P   WGE PCAFV LK+  E     +E ++I+YCR  +P +M P+KVVF +ELPK S 
Sbjct:   475 AMPHPLWGETPCAFVVLKKGEE-GLVTSEGDLIKYCRENMPHFMCPKKVVFFQELPKNSN 533

Query:   315 GKIQKYLLREFAKSV 329
             GKI K  LR+ AK++
Sbjct:   534 GKILKSKLRDIAKAL 548

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0019605 "butyrate metabolic process" evidence=IDA

GO:0047760 "butyrate-CoA ligase activity" evidence=IDA

TIGR_CMR|SPO_0677 SPO_0677 "AMP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 518 (187.4 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
 Identities = 107/195 (54%), Positives = 135/195 (69%)

Query:   135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
             +RA LK RQGV+ V L+ + V +PET E V  DG ++GE+ ++G  V  GY K+ +AT R
Sbjct:   354 ERAALKVRQGVRYVALSGLMVADPETLEPVPADGETMGEIFMQGNIVMKGYLKNPDATDR 413

Query:   195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
                  GWF +GD+GVMH DGY+ +KDRSKD+IISGGENI S EVE VLY   AV EAAVV
Sbjct:   414 AFR-GGWFASGDLGVMHPDGYIALKDRSKDIIISGGENISSVEVEDVLYKHPAVMEAAVV 472

Query:   255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
             ARPD  WGE PCAFV LK    +       ++I +CRA +  +  P+ VVF E LPKTST
Sbjct:   473 ARPDEKWGETPCAFVELKPGQSVEAA----DLIAHCRANMAHFKAPKTVVFGE-LPKTST 527

Query:   315 GKIQKYLLREFAKSV 329
             GKIQK+LLRE A+++
Sbjct:   528 GKIQKFLLRERARAL 542

GO:0008152 "metabolic process" evidence=ISS

GO:0016208 "AMP binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	330
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-103
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	5e-94
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	3e-77
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	2e-72
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	7e-71
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	9e-71
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-66
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	5e-64
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	9e-64
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	7e-58
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	4e-57
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	4e-54
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	6e-52
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	5e-51
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	9e-50
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	4e-49
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	6e-49
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	8e-49
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	6e-48
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-47
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	1e-47
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-46
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-44
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	4e-44
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-43
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	1e-41
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	7e-41
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-40
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	6e-40
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	2e-39
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-39
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	7e-39
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-38
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-38
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-37
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	1e-36
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-36
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	3e-36
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	4e-36
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	7e-36
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-35
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	6e-35
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	6e-35
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-34
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-34
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-34
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	5e-34
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	6e-34
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-33
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	6e-33
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-32
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-32
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	4e-32
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-31
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	7e-31
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-30
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	3e-30
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	4e-30
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	4e-30
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-29
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-29
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	2e-29
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-29
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	4e-29
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	7e-29
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-28
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-28
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	2e-28
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	3e-28
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-27
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-27
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	4e-27
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	5e-27
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	7e-27
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	5e-26
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	6e-26
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-25
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-25
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	4e-25
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	5e-25
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	1e-24
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	1e-24
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	1e-24
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-24
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	1e-24
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	2e-24
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	4e-24
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	4e-24
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	4e-24
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	6e-24
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-23
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	3e-23
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	3e-23
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	4e-23
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	7e-23
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	3e-22
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	3e-22
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	1e-21
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	2e-21
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	3e-21
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	1e-20
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	1e-20
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-20
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	2e-20
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-20
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	1e-19
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-19
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	2e-19
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-19
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	4e-19
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	5e-19
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-18
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	5e-18
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-17
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	9e-17
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-16
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	5e-16
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	8e-16
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-15
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	1e-15
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	2e-15
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	2e-15
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	2e-15
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	5e-15
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	7e-15
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	8e-15
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	1e-14
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	1e-14
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	5e-14
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	5e-14
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	6e-14
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	2e-13
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	5e-13
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	1e-12
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	4e-12
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	5e-12
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	9e-12
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-11
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	1e-11
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-11
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	3e-11
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	3e-11
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	6e-11
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-10
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	2e-10
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-10
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	2e-10
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	3e-10
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	5e-10
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	5e-10
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	5e-10
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	8e-10
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-09
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-09
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	7e-09
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	8e-09
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-08
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	2e-08
pfam13193	43	pfam13193, DUF4009, Domain of unknown function (DU	2e-08
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	3e-08
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-08
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	3e-08
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	3e-08
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	4e-08
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	5e-08
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	5e-08
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	2e-07
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-07
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-07
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	3e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-07
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	3e-07
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	3e-07
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	4e-07
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	4e-07
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	4e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-07
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	6e-07
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	6e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	6e-07
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-06
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	3e-06
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	3e-06
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	4e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-06
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	6e-06
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	7e-06
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	7e-06
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	8e-06
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	9e-06
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-05
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	1e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-05
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	1e-05
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	2e-05
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-05
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-05
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	2e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-05
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	3e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-05
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	4e-05
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	5e-05
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	8e-05
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	1e-04
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	2e-04
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	2e-04
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	3e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	4e-04
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	4e-04
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	5e-04
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	5e-04
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	5e-04
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	5e-04
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	0.001
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	0.001
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	0.002
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	0.002
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	0.003
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	0.003
TIGR02372	386	TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase	0.003
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	0.004

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  311 bits (800), Expect = e-103
 Identities = 120/198 (60%), Positives = 146/198 (73%), Gaps = 7/198 (3%)

Query: 127 LEALSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYF 186
            +AL    +RARLKARQGV+ VGL EVDVV+PET + V RDG ++GE+V+RG  V  GY+
Sbjct: 330 WDALPA-EERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYY 388

Query: 187 KDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSIT 246
           K+ EAT    +  GWF++GD+ V+H DGY+EIKDRSKD+IISGGENI S EVE VLY   
Sbjct: 389 KNPEATEEAFAG-GWFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHP 447

Query: 247 AVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFS 306
           AV EAAVVARPD  WGE PCAFV LK         TE+E+IEYCR +L  + VP+ V F 
Sbjct: 448 AVLEAAVVARPDEKWGETPCAFVVLKP----GASVTEEELIEYCREKLAHFKVPKTVEFV 503

Query: 307 EELPKTSTGKIQKYLLRE 324
            ELPKT+TGKIQK++LRE
Sbjct: 504 -ELPKTATGKIQKFVLRE 520

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score =  289 bits (741), Expect = 5e-94
 Identities = 112/203 (55%), Positives = 142/203 (69%), Gaps = 7/203 (3%)

Query: 128 EALSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFK 187
           +AL L  +RA+LKARQGV+      V V++P+T + V  DG ++GE++ RG  V  GY K
Sbjct: 346 DALPL-DERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLK 404

Query: 188 DKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITA 247
           + +AT    +  GWF+TGD+ V+H DGY++IKDRSKD+IISGGENI S EVE VLY   A
Sbjct: 405 NPKATEEAFAG-GWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPA 463

Query: 248 VNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSE 307
           V  AAVVA+PD  WGE+PCAFV LK         TE+EII +CR  L  + VP+ VVF  
Sbjct: 464 VLVAAVVAKPDPKWGEVPCAFVELKDGASA----TEEEIIAHCREHLAGFKVPKAVVFG- 518

Query: 308 ELPKTSTGKIQKYLLREFAKSVS 330
           ELPKTSTGKIQK++LRE AKS+ 
Sbjct: 519 ELPKTSTGKIQKFVLREQAKSLK 541

Length = 545

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score =  246 bits (630), Expect = 3e-77
 Identities = 122/249 (48%), Positives = 162/249 (65%), Gaps = 20/249 (8%)

Query: 94  NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL-------------SLFP-QRARL 139
           ++ T   A   SVL   SE         HTY L E               SL P ++ARL
Sbjct: 314 HVMTAGAAPPPSVLFAMSEKGFRVT---HTYGLSETYGPSTVCAWKPEWDSLPPEEQARL 370

Query: 140 KARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDN 199
            ARQGV+ +GL  +DVV+ +T + V  DG ++GE+V+RG  V  GY K+ +A     + N
Sbjct: 371 NARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA-N 429

Query: 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM 259
           GWF++GD+GV H DGY+EIKDRSKD+IISGGENI S EVE+V+Y+  AV EA+VVARPD 
Sbjct: 430 GWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDE 489

Query: 260 FWGEIPCAFVSLKRDLELTKKP-TEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQ 318
            WGE PCAFV+LK  ++ + +    ++I+++CR RLP Y VP+ VVF   LPKT+TGKIQ
Sbjct: 490 RWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFG-PLPKTATGKIQ 548

Query: 319 KYLLREFAK 327
           K++LR  AK
Sbjct: 549 KHVLRAKAK 557

Length = 567

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  227 bits (581), Expect = 2e-72
 Identities = 89/183 (48%), Positives = 112/183 (61%), Gaps = 11/183 (6%)

Query: 145 VKTVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNG 200
             TVG      EV +V+P+ GE V    V  GE+ +RG  V  GY+ D EAT   I  +G
Sbjct: 172 PGTVGRPLPGVEVKIVDPDGGE-VPPGEV--GEICVRGYSVMKGYYNDPEATAEAIDADG 228

Query: 201 WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMF 260
           W +TGD+G M  DGY+ I  R KD+II GGENI  AE+E  L +  AV EAAVV  PD  
Sbjct: 229 WLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDER 288

Query: 261 WGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKY 320
            GE+  AFV LK         TE+E+I +CR RL R+ VPR V F +ELP+T++GKIQK+
Sbjct: 289 LGEVVAAFVVLKPG----ATLTEEELIAFCRGRLARFKVPRYVRFVDELPRTASGKIQKF 344

Query: 321 LLR 323
            LR
Sbjct: 345 KLR 347

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score =  230 bits (587), Expect = 7e-71
 Identities = 109/201 (54%), Positives = 136/201 (67%), Gaps = 7/201 (3%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
           Q+  LKARQGV  +GLA+VDV N ET ESV RDG ++GE+V++G  +  GY K+ +AT  
Sbjct: 356 QQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSE 415

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
               +GW  TGD+GV+H DG+VEIKDRSKD+IISGGENI S EVE+VLY    V E AVV
Sbjct: 416 AFK-HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVV 474

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKP------TEKEIIEYCRARLPRYMVPRKVVFSEE 308
           A P   WGE PCAFV L++     +         E+++IEYCR  LP +M PRKVVF +E
Sbjct: 475 AMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQE 534

Query: 309 LPKTSTGKIQKYLLREFAKSV 329
           LPK   GKI K  LR+ AK +
Sbjct: 535 LPKNGNGKILKPKLRDIAKGL 555

Length = 579

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  228 bits (583), Expect = 9e-71
 Identities = 78/182 (42%), Positives = 107/182 (58%), Gaps = 10/182 (5%)

Query: 147 TVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
           + G      E  +V+ + G+ +  DG  +GE+++RG  +  GY+   EAT   I D GW 
Sbjct: 340 SAGRPLPGVEARIVDDD-GDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWL 397

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
           +TGD+G +  DGY+ I DR KDVIISGGENI   E+E  LY   AV E AV+  PD  WG
Sbjct: 398 HTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWG 457

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
           E P A V LK           KE+  + R RL ++ +P+++ F +ELP+TS GKI K +L
Sbjct: 458 ERPVAVVVLKPG----ATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVL 513

Query: 323 RE 324
           RE
Sbjct: 514 RE 515

Length = 521

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  211 bits (540), Expect = 3e-66
 Identities = 79/178 (44%), Positives = 106/178 (59%), Gaps = 8/178 (4%)

Query: 146 KTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTG 205
           + V   EV +V+ + G  +    V  GE+V+RG  V  GY+   EAT   + D GW +TG
Sbjct: 173 RPVPGVEVRIVDED-GRELPPGEV--GEIVVRGPAVMAGYWNRPEATAEALRD-GWLHTG 228

Query: 206 DIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIP 265
           D+G +  DGY+ I DR KD+IISGGENI  AEVE+VL +  AV + AV+  PD  WGE  
Sbjct: 229 DLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAV 288

Query: 266 CAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
            A V L+    L      +E+I +CR RL  Y VP+ V F +ELP+ ++GKI K  LR
Sbjct: 289 VAVVVLRPGATL----DAEELIAFCRERLAGYKVPKSVEFVDELPRNASGKILKRELR 342

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  210 bits (537), Expect = 5e-64
 Identities = 86/190 (45%), Positives = 120/190 (63%), Gaps = 7/190 (3%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
           ++  L+A+QG    G+ E+ +V+ E  E +  DG ++GE+V+RG  VT  Y+KD E T  
Sbjct: 335 EKLELRAKQGRPVPGV-ELRIVDDEGNE-LPWDGKTVGELVVRGPWVTGSYYKDPEKTEE 392

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
              D GWF TGD+ V+  DGY++I DR+KDVI SGGE I S E+E+ L +  AV EAAVV
Sbjct: 393 LTRD-GWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVV 451

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
             P   WGE P A V LK       K TE+E++E+   ++ ++ +P +VVF +E+PKTS 
Sbjct: 452 GVPHEKWGERPLAVVVLKPG----AKVTEEELLEHLAKKVAKWWLPDRVVFVDEIPKTSV 507

Query: 315 GKIQKYLLRE 324
           GK  K  LRE
Sbjct: 508 GKFDKKALRE 517

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  210 bits (536), Expect = 9e-64
 Identities = 86/217 (39%), Positives = 115/217 (52%), Gaps = 9/217 (4%)

Query: 112 ESKLVFVDHLHTYLLLEALSLFPQRARLKARQGVKTVGLA----EVDVVNPETGESVKRD 167
           E +   +  L  Y L E   +              +VG      EV +V+P+ GE +   
Sbjct: 312 EERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVL--- 368

Query: 168 GVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVII 227
              +GE+ +RG  V  GY+   EAT     ++GW  TGD+G +  DGY+ I  R KD+II
Sbjct: 369 PGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLII 428

Query: 228 SGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEII 287
           SGGENI   E+E+VL    AV EAAVV  PD  WGE   A V LK   +     T +E+ 
Sbjct: 429 SGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAE--LTAEELR 486

Query: 288 EYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            + R RL  Y VPR VVF +ELP+T++GKI +  LRE
Sbjct: 487 AFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALRE 523

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  193 bits (492), Expect = 7e-58
 Identities = 84/181 (46%), Positives = 106/181 (58%), Gaps = 12/181 (6%)

Query: 147 TVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
           ++GL     EV +V+ E G  +    V  GE+V+RG  V  GY+   E T   +  +GW 
Sbjct: 296 SIGLPLPGTEVKIVDDE-GNELPPGEV--GELVVRGPQVMKGYWNRPEETAEVL-TDGWL 351

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
            TGDIG M  DGY  I DR KD+II GG N+   E+E VLYS  AV EAAVV  PD + G
Sbjct: 352 RTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRG 411

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
           E   AFV LK         TE+E+I +CR RL  Y VPR+V F +ELPK++ GKI +  L
Sbjct: 412 EAVKAFVVLKEG----ASLTEEELIAFCRERLAAYKVPRQVEFRDELPKSAVGKILRREL 467

Query: 323 R 323
           R
Sbjct: 468 R 468

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  193 bits (493), Expect = 4e-57
 Identities = 81/188 (43%), Positives = 111/188 (59%), Gaps = 10/188 (5%)

Query: 145 VKTVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNG 200
           V TVG A    EV +V+PETGE+V R G   GE+  RG  V  GY+ D E T   I  +G
Sbjct: 370 VTTVGRALPHLEVKIVDPETGETVPR-GEQ-GELCTRGYSVMKGYWNDPEKTAEAIDADG 427

Query: 201 WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMF 260
           W +TGD+ VM  +GYV I  R KD+II GGENI   E+E  LY+   + +  VV  PD  
Sbjct: 428 WMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEK 487

Query: 261 WGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKY 320
           +GE  CA++ L+    L    TE+++ ++CR ++  Y +PR + F +E P T TGKIQK+
Sbjct: 488 YGEEVCAWIILRPGATL----TEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKF 543

Query: 321 LLREFAKS 328
            +RE    
Sbjct: 544 KMREMMIE 551

Length = 559

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  179 bits (457), Expect = 4e-54
 Identities = 75/178 (42%), Positives = 99/178 (55%), Gaps = 11/178 (6%)

Query: 145 VKTVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNG 200
             TVG      EV VV+ E    +    V  GE+V+RG  V  GY+ +   T    +++G
Sbjct: 168 PGTVGRPVPGVEVRVVDEEGKP-LPPGEV--GELVVRGPWVMKGYWNNPPETTAAATEDG 224

Query: 201 WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMF 260
           W+ TGD+G +  +GY+ I  RSKD+I  GGEN+  AEVESVL    AV EAAVV  PD  
Sbjct: 225 WYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDED 284

Query: 261 WGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQ 318
            GE   AFV L+           +E+  + R RL  Y VPR + F +ELPKT++GKI 
Sbjct: 285 RGERIVAFVVLRPG----ADALAEELKAHLRERLAPYKVPRVIEFVDELPKTASGKID 338

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  178 bits (454), Expect = 6e-52
 Identities = 86/182 (47%), Positives = 110/182 (60%), Gaps = 11/182 (6%)

Query: 147 TVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
           T+G A    E  +VN   GE V    V  GE+++RG  V  GY+ D EAT   I  +GW 
Sbjct: 338 TIGTAIAGVENKIVNEL-GEEVPVGEV--GELLVRGPNVMKGYYDDPEATAAAIDADGWL 394

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
           +TGD+G +  +GY+ I DR KD+ I GG N+  AEVE VLY   AV EAAV+  PD   G
Sbjct: 395 HTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLG 454

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
           E+  A+V LK   EL    TE+E+I YCR  L +Y VPR + F +ELPK +TGK+ K  L
Sbjct: 455 EVGKAYVVLKPGAEL----TEEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRAL 510

Query: 323 RE 324
           RE
Sbjct: 511 RE 512

Length = 513

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  173 bits (442), Expect = 5e-51
 Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 21/188 (11%)

Query: 141 ARQGVKTVGL----AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCI 196
               + +VG      E+ +VNP+ GE           +++RG  + +GY      T   +
Sbjct: 237 FLAKLGSVGKPLPGRELRIVNPQDGE-----------ILVRGPSLFLGYLPQGGLTPP-L 284

Query: 197 SDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVAR 256
            ++GWF+TGD+G + A+GY+ +  R  D+IISGGENI   E+E+VL    AV EAAVV  
Sbjct: 285 DEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGV 344

Query: 257 PDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGK 316
           PD  WG+ P AFV    D       + +E+  +   +L +Y  P++     ELP+ ++GK
Sbjct: 345 PDDEWGQRPVAFVVPNDD-----PVSVEELQAFLADKLAKYKRPKRWYPLPELPRNASGK 399

Query: 317 IQKYLLRE 324
           I +  LR+
Sbjct: 400 IDRAALRQ 407

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  172 bits (437), Expect = 9e-50
 Identities = 67/153 (43%), Positives = 98/153 (64%), Gaps = 7/153 (4%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           GE+V++G  VT GY   ++ATR    D GWF TGDIG +  +G++ + DR  D+IISGGE
Sbjct: 333 GEIVVKGPNVTKGYLNREDATRETFQD-GWFKTGDIGYLDEEGFLYVLDRRSDLIISGGE 391

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
           NI  AE+E VL S   V EA VV  PD  WG++P AFV    ++      TE+E+  +C 
Sbjct: 392 NIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV------TEEELRHFCE 445

Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            +L +Y VP++  F EELP+ ++GK+ ++ L++
Sbjct: 446 EKLAKYKVPKRFYFVEELPRNASGKLLRHELKQ 478

Length = 483

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  171 bits (436), Expect = 4e-49
 Identities = 77/186 (41%), Positives = 108/186 (58%), Gaps = 11/186 (5%)

Query: 145 VKTVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNG 200
           V+TVG      EV VV+P+ G +V R  +  GE+  RG  V  GY+ + EAT   I ++G
Sbjct: 372 VETVGRTQPHLEVKVVDPD-GATVPRGEI--GELCTRGYSVMKGYWNNPEATAESIDEDG 428

Query: 201 WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMF 260
           W +TGD+  M   GYV I  RSKD+II GGENI   E+E  L++  AV +  V   PD  
Sbjct: 429 WMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEK 488

Query: 261 WGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKY 320
           +GE   A+V L          +E+E+ E+C+AR+  + VPR   F +E P T TGK+QK+
Sbjct: 489 YGEEIVAWVRLHPG----HAASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKF 544

Query: 321 LLREFA 326
            +RE +
Sbjct: 545 RMREIS 550

Length = 558

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  166 bits (423), Expect = 6e-49
 Identities = 74/181 (40%), Positives = 102/181 (56%), Gaps = 11/181 (6%)

Query: 147 TVGLA---EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFY 203
           +VG     EV +++ + G  +   G   GE+V+RG  VT GY  + EA R    D GWF 
Sbjct: 173 SVGRPAGVEVAILDDD-GRPLP-PGQE-GEIVIRGPNVTAGYLNNPEANREAFRD-GWFR 228

Query: 204 TGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGE 263
           TGD+G +  DGY+ +  R K++I  GGE I   EVE VL    AV EA V   PD  +GE
Sbjct: 229 TGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGE 288

Query: 264 IPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
              A V L+ D     K T +E+ ++ R RL  + VP+K++F + LPK +TGKIQ+  L 
Sbjct: 289 EVAAAVVLRAD----SKVTIEELRDFARKRLAAFKVPKKILFVDALPKGATGKIQRRKLA 344

Query: 324 E 324
           E
Sbjct: 345 E 345

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  170 bits (433), Expect = 8e-49
 Identities = 74/173 (42%), Positives = 102/173 (58%), Gaps = 8/173 (4%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211
           E  VV+ + G  V      +GE+V R   + +GY+ D E T       GWF++GD+GVM 
Sbjct: 351 ETRVVD-DDGNDVAPG--EVGEIVHRSPQLMLGYWDDPEKTAEAFRG-GWFHSGDLGVMD 406

Query: 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSL 271
            +GY+ + DR KD+I +GGEN+ S EVE  LY+  AV E AV+  PD  W E   A V  
Sbjct: 407 EEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVP 466

Query: 272 KRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
           K    +    TE E+I +CRARL  + VP++V+F +ELP+  +GKI K  LRE
Sbjct: 467 KAGATV----TEDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRE 515

Length = 523

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  168 bits (427), Expect = 6e-48
 Identities = 63/122 (51%), Positives = 86/122 (70%)

Query: 13  TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVA 72
            PLT L FLERAA  Y D  ++VY +  YT+ ET+ RC ++AS+LS +GI +G VV+V+A
Sbjct: 2   VPLTPLSFLERAAKVYPDRTAVVYGDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLA 61

Query: 73  PNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSL 132
           PN P+M E  FGVPM+GA+L  +NTRLDA  ++ +L HSE+K++FVD     L  EAL+L
Sbjct: 62  PNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL 121

Query: 133 FP 134
             
Sbjct: 122 LS 123

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score =  167 bits (425), Expect = 1e-47
 Identities = 65/133 (48%), Positives = 94/133 (70%)

Query: 2   EQLLLPNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVG 61
           EQ L  N+AN  PLT L FLERAA  Y D P++++ +   TW+ET+ RC ++AS+L+  G
Sbjct: 5   EQGLDRNAANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRG 64

Query: 62  IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHL 121
           I RG  V+V+ PN+P+M E  FGVPM+GA+LN +NTRLDA +++ +L+H E+K++ VD  
Sbjct: 65  IGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTE 124

Query: 122 HTYLLLEALSLFP 134
              +  EAL+L P
Sbjct: 125 FAEVAREALALLP 137

Length = 545

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  167 bits (423), Expect = 1e-47
 Identities = 80/188 (42%), Positives = 110/188 (58%), Gaps = 8/188 (4%)

Query: 138 RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS 197
            LKA+ G+    +  + V + E    V +DG +LGEV L+G  +T GY+ ++EATR  ++
Sbjct: 329 TLKAKTGLPIPLVR-LRVADEEG-RPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALT 386

Query: 198 DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARP 257
            +G+F TGDI V   +GYVEIKDR KD+I SGGE I S ++E+ L     V EAAVVA P
Sbjct: 387 PDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIP 446

Query: 258 DMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY-MVPRKVVFSEELPKTSTGK 316
              W E P A V  +      +KPT +E+ E+          +P   VF+EE+P+TS GK
Sbjct: 447 HPKWQERPLAVVVPRG-----EKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGK 501

Query: 317 IQKYLLRE 324
             K  LRE
Sbjct: 502 FLKRALRE 509

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  162 bits (413), Expect = 1e-46
 Identities = 68/175 (38%), Positives = 93/175 (53%), Gaps = 9/175 (5%)

Query: 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVM 210
            EV +V+ + G  V       GE+ +RG  + +GY    + T     D GWF TGD+G +
Sbjct: 271 VEVRIVDDD-GNDVPPGEE--GELQVRGPQLFLGYLDPPDNTEAFTDD-GWFRTGDLGRL 326

Query: 211 HADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVS 270
            ADGY+ I  R KD+II GGENI + E+E +L    AV E AVVA PD   GE  CA V 
Sbjct: 327 DADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAVVV 386

Query: 271 LKRDLELTKKPTEKEIIEYCRA-RLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
                      T  E+ E+  A  L +   P ++   + LP+T +GK+QK+ LRE
Sbjct: 387 PAP----GASLTLAELTEHLAAQGLAKQKWPERLEVVDALPRTPSGKVQKFELRE 437

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  157 bits (399), Expect = 3e-44
 Identities = 79/192 (41%), Positives = 111/192 (57%), Gaps = 8/192 (4%)

Query: 137 ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCI 196
           AR K     K V   + ++++    + V+   V  GE+++RG  V   Y+   +AT   I
Sbjct: 312 ARRKVGSIGKPVLFCDYELIDENKNK-VEVGEV--GELLIRGPNVMKEYWNRPDATEETI 368

Query: 197 SDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVAR 256
            D GW  TGD+  +  DG+V I  R K++IISGGENI   EVE V+  ++ V E AVV R
Sbjct: 369 QD-GWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGR 427

Query: 257 PDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGK 316
             + WGEIP AF+  K    L     EK++IE+CR  L +Y +P+++VF +ELPK +TGK
Sbjct: 428 QHVKWGEIPIAFIVKKSSSVL----IEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGK 483

Query: 317 IQKYLLREFAKS 328
           IQK  L    KS
Sbjct: 484 IQKAQLVNQLKS 495

Length = 496

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  153 bits (390), Expect = 4e-44
 Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 12/178 (6%)

Query: 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS-----DNGWFYTG 205
            E+ VV+ + G       V  GE+V RG  V  GY+ D EAT   +           YTG
Sbjct: 180 VELWVVDED-GNRCAPGEV--GELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTG 236

Query: 206 DIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIP 265
           D+  M  +GY+    R  D+I + G  +   E+E V+ +   V EAAV+  PD   G+  
Sbjct: 237 DLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAI 296

Query: 266 CAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
            A V       L     EKE++++CR  LP YMVP ++VF + LPK + GK+ +  LR
Sbjct: 297 VAVVVSADGESL----DEKELLKHCRKHLPNYMVPAEIVFVDSLPKNANGKVDRSALR 350

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  153 bits (390), Expect = 3e-43
 Identities = 78/188 (41%), Positives = 102/188 (54%), Gaps = 19/188 (10%)

Query: 140 KARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLR---GGCVTVGYFKDKEATRRCI 196
           + R GV      EV +V+ + G  V    V  GE+V+R      +  GY+   EAT +  
Sbjct: 249 RPRPGV------EVRIVDED-GREVPPGEV--GELVVRPRRPWAMFKGYYGMPEATAK-A 298

Query: 197 SDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVAR 256
             NGWF+TGD G    DG++   DR KD I   GENI S EVE+ + +  AV EAAVVA 
Sbjct: 299 WRNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAV 358

Query: 257 PDMFWG-EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTG 315
           P      E+  A V L+    L      + ++E+CR RLP +MVPR + F +ELPKT T 
Sbjct: 359 PSELGEDEVK-AVVVLRPGETL----DPEALLEFCRDRLPYFMVPRYIEFVDELPKTPTE 413

Query: 316 KIQKYLLR 323
           KIQK  LR
Sbjct: 414 KIQKAELR 421

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  151 bits (384), Expect = 1e-41
 Identities = 64/155 (41%), Positives = 94/155 (60%), Gaps = 4/155 (2%)

Query: 171 LGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGG 230
            GE   RG  V +GY  + E T R + + GW+Y+GD+  M   GY++I  R KD+I+ GG
Sbjct: 381 EGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGG 440

Query: 231 ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEY- 289
           ENI S EVE +L     +++A VVA PD   GE  CA+V LK         T +E++ + 
Sbjct: 441 ENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLK---APHHSLTLEEVVAFF 497

Query: 290 CRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            R R+ +Y  P  +V  ++LP+T++GKIQK+LLR+
Sbjct: 498 SRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRK 532

Length = 547

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  147 bits (373), Expect = 7e-41
 Identities = 66/178 (37%), Positives = 94/178 (52%), Gaps = 11/178 (6%)

Query: 147 TVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
           TVGL     EV +V+ + GE +    V  GE+ +RG  V   Y+   EAT    +++GWF
Sbjct: 259 TVGLPLPGVEVRIVDEDGGEPLAAGEV--GEIQVRGPNVFSEYWNKPEATAEAFTEDGWF 316

Query: 203 YTGDIGVMHADGYVEIKDRSKDVII-SGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
            TGD+GV+  DGY  I  R  D II SGG  + + E+E  L     V E AV+  PD  W
Sbjct: 317 KTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDW 376

Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQK 319
           GE   A V  +         T  E+  + R +L  Y +P++V+  +ELP+ + GK+QK
Sbjct: 377 GEAVVAVVVPEAG----AALTLAELRAWAREKLAPYKIPKRVIVVDELPRNAMGKVQK 430

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  146 bits (371), Expect = 2e-40
 Identities = 73/175 (41%), Positives = 99/175 (56%), Gaps = 7/175 (4%)

Query: 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC---ISDNGWFYTGDI 207
            +  V++PETGE     G   GE+V+RG  V  GY+   EAT      +    +F TGD+
Sbjct: 260 TDARVIDPETGE-ELPPGEE-GEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDL 317

Query: 208 GVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCA 267
           G +  +GY    DR K +I   G  +  AEVE++LY   AV E  V+ RPD   GE+  A
Sbjct: 318 GYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKA 377

Query: 268 FVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
           FV LK D     K TE++IIE+CR R+  Y  PR + F +ELPKT++GK+   LL
Sbjct: 378 FVVLKPDYR--GKVTEEDIIEWCRERMAAYKYPRIIEFVDELPKTASGKVLWRLL 430

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score =  147 bits (372), Expect = 6e-40
 Identities = 62/133 (46%), Positives = 93/133 (69%), Gaps = 1/133 (0%)

Query: 6   LP-NSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQR 64
           LP N+AN T LT L FLERAA  +    S+V+ +  YTW++T++RC ++AS+L+   I  
Sbjct: 10  LPKNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGP 69

Query: 65  GHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY 124
           G  V+V+APN+P+MYE  FGVPM+GA++N +N RL+A T++ LL+HS+S++V VD     
Sbjct: 70  GSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFT 129

Query: 125 LLLEALSLFPQRA 137
           L  EAL +  ++ 
Sbjct: 130 LAEEALKILAEKK 142

Length = 567

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  144 bits (366), Expect = 2e-39
 Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 12/157 (7%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           GE++LRG  ++ GY++  +AT R  + +GWF TGDI    ADG+  + DR KD+ ISGGE
Sbjct: 333 GELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGE 392

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLK----RDLELTKKPTEKEII 287
           N+  AE+E+VL     + E AVV   D  WGE+    +        DLE         I 
Sbjct: 393 NVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLE--------RIR 444

Query: 288 EYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            +   RL +Y VP+ +   + LP+T++GK+QK  LR+
Sbjct: 445 SHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRD 481

Length = 488

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score =  145 bits (367), Expect = 3e-39
 Identities = 62/134 (46%), Positives = 92/134 (68%), Gaps = 1/134 (0%)

Query: 1   MEQLLLPNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSV 60
           M+ L L   AN+ PLT + FL+RA+  Y +  S++Y  T +TW +T+ RC ++A+SL S+
Sbjct: 1   MDNLAL-CEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISL 59

Query: 61  GIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDH 120
            I +  VVSV+APN P+MYE+ F VPM+GA+LN INTRLDA +++ +L+H++ K++FVD 
Sbjct: 60  NITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDR 119

Query: 121 LHTYLLLEALSLFP 134
               L  E L L  
Sbjct: 120 SFEPLAREVLHLLS 133

Length = 579

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  143 bits (363), Expect = 7e-39
 Identities = 65/175 (37%), Positives = 91/175 (52%), Gaps = 9/175 (5%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRG--GCVTVGYFKDKEATRRCISDNGWFYTGDIGV 209
            V  V+ E G  V       GE+V+R     + + Y+ D E  +       W+ TGD   
Sbjct: 351 AVRRVDDE-GNPVPPGV---GELVVRLPWPGMALTYWNDPERYKEAYFG-RWYRTGDWAE 405

Query: 210 MHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFV 269
              DGY  +  RS DVI   G+ I   E+ESVL +  AV EAAVV  PD   G+I  AFV
Sbjct: 406 RDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFV 465

Query: 270 SLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            L   +E  +    +EI  +    +  + +PRK+ F +ELPKT++GKIQ+ LLR+
Sbjct: 466 VLAAGVEPNE--LAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRK 518

Length = 528

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  142 bits (360), Expect = 1e-38
 Identities = 65/153 (42%), Positives = 92/153 (60%), Gaps = 5/153 (3%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           GE+ +RG  VT GY+KD E T        WF +GD+G +  +G++ + DR KD+IISGGE
Sbjct: 346 GEICMRGPKVTKGYWKDPEKTAEAFYG-DWFRSGDVGYLDEEGFLYLTDRKKDMIISGGE 404

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
           NI S+EVE V+Y +  V EAAV+   D  WGE   A V L     LT     + +  +CR
Sbjct: 405 NIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTL----EALDRHCR 460

Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            RL  + VPR++   +ELP+  +GK+ K +LR+
Sbjct: 461 QRLASFKVPRQLKVRDELPRNPSGKVLKRVLRD 493

Length = 497

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  141 bits (359), Expect = 2e-38
 Identities = 68/182 (37%), Positives = 96/182 (52%), Gaps = 10/182 (5%)

Query: 147 TVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
           TVG       + V +PETG  +    + + EV  +G  V  GY++  E T      +G+F
Sbjct: 322 TVGFPLPGVSLRVTDPETGAELPPGEIGMIEV--KGPNVFKGYWRMPEKTAEEFRADGFF 379

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
            TGD+G +   GYV I  R KD+IISGG N+   EVE  +  +  V E+AV+  P   +G
Sbjct: 380 ITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFG 439

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
           E   A V  K    L     E  I+   + RL R+  P++V F +ELP+ + GK+QK LL
Sbjct: 440 EGVTAVVVPKPGAAL----DEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLL 495

Query: 323 RE 324
           RE
Sbjct: 496 RE 497

Length = 504

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  139 bits (352), Expect = 2e-37
 Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 8/181 (4%)

Query: 143 QGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
           QG       E+ +V+ +        G  +GE++ RG     GY++  E   R  +D+G++
Sbjct: 310 QGRPISPADEIRIVDDQG--EPVPPG-EVGELLTRGPYTIRGYYRAPEHNARAFTDDGFY 366

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
            TGD+  + ADGY  +  R KD I  GGE I   E+E++L S  AV +AAVV  PD   G
Sbjct: 367 RTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLG 426

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRAR-LPRYMVPRKVVFSEELPKTSTGKIQKYL 321
           E  CAFV  +        PT  E+  + R + L ++ +P ++   + LP T  GK+ K  
Sbjct: 427 ERICAFVVPRGGAA----PTLAELRAFLREQGLAKFKLPDRLEVVDSLPLTPVGKVDKKA 482

Query: 322 L 322
           L
Sbjct: 483 L 483

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  138 bits (349), Expect = 1e-36
 Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 7/157 (4%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           G + +RG     GY K  +        +GWF TGD+  + ADGY+ I  RSKDVII GGE
Sbjct: 393 GRLQVRGCSNFGGYLKRPQLNG--TDADGWFDTGDLARIDADGYIRISGRSKDVIIRGGE 450

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
           NI   E+E++LY   A+ + A+VA PD   GE  CAFV  +    L      +E++E+ +
Sbjct: 451 NIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDF----EEMVEFLK 506

Query: 292 A-RLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAK 327
           A ++ +  +P ++V  + LP+T +GKIQK+ LRE  +
Sbjct: 507 AQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLR 543

Length = 547

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  137 bits (347), Expect = 2e-36
 Identities = 62/152 (40%), Positives = 88/152 (57%), Gaps = 5/152 (3%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           GE+ +RG  V  GY+   + T + ++ +G+F TGD+GVM   GY +I DR KD+I+  G 
Sbjct: 407 GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGF 466

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
           N+   E+E V+ S   V E A V  PD   GE    FV +K+D  L    TE+++  +C+
Sbjct: 467 NVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFV-VKKDPAL----TEEDVKAFCK 521

Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
            RL  Y  P+ V F  ELPKT+ GKI +  LR
Sbjct: 522 ERLTNYKRPKFVEFRTELPKTNVGKILRRELR 553

Length = 557

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  135 bits (343), Expect = 3e-36
 Identities = 62/168 (36%), Positives = 96/168 (57%), Gaps = 7/168 (4%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211
           E  +V+ + G+S+  +    GE+ ++G  +  GY  + EAT+  I ++GW +TGDIG   
Sbjct: 326 EAKIVDEDGGKSLGPNER--GELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFD 383

Query: 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSL 271
            DG   I DR K++I   G  +  AE+E+VL     V +AAV+  PD   GE+P A+V L
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVL 443

Query: 272 KRDLELTKKPTEKEIIEYCRARLPRYMVPRK-VVFSEELPKTSTGKIQ 318
           K       K TE+E+ +Y   ++ +Y   R  VVF +E+PK+ +GKI 
Sbjct: 444 KPG----SKLTEQEVKDYVAKKVAKYKQLRGGVVFVDEIPKSPSGKIL 487

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  134 bits (340), Expect = 4e-36
 Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 8/157 (5%)

Query: 164 VKRDG-VSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRS 222
           +K D     GE++++G  +  GY    E         GWF TGDIG +  +G++ +  R 
Sbjct: 284 IKVDNKEGHGEIMVKGANLMKGYLYQGEL-TPAFEQQGWFNTGDIGELDGEGFLYVLGRR 342

Query: 223 KDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPT 282
            D+IISGGENI   E+E+VLY    + EA VV +PD  WG++P A++  + D       +
Sbjct: 343 DDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD------IS 396

Query: 283 EKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQK 319
           + ++I Y   +L +Y VP      +ELP  ++GKI +
Sbjct: 397 QAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILR 433

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score =  135 bits (342), Expect = 7e-36
 Identities = 65/190 (34%), Positives = 101/190 (53%), Gaps = 9/190 (4%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
            R  +  +QG    G+ E+ + +   G+ +  DG + G + +RG  V   Y++       
Sbjct: 350 ARLDVLQKQGYPPFGV-EMKITDDA-GKELPWDGKTFGRLKVRGPAVAAAYYR---VDGE 404

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
            + D+G+F TGD+  + A GY+ I DRSKDVI SGGE I S ++E++      V EAAV+
Sbjct: 405 ILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVI 464

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
                 W E P   V LK      +  T +EI++Y   ++ ++ +P  V F + +P T+T
Sbjct: 465 GVYHPKWDERPLLIVQLKPG----ETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTAT 520

Query: 315 GKIQKYLLRE 324
           GKI K  LRE
Sbjct: 521 GKILKTALRE 530

Length = 542

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  134 bits (340), Expect = 3e-35
 Identities = 78/224 (34%), Positives = 100/224 (44%), Gaps = 38/224 (16%)

Query: 136 RARLKARQGVKTV---GLAE---VDVVNPETGES----------------VKRDGV---- 169
             R +A  GV+ V   GL E   V  VNP  GE                 V  D      
Sbjct: 350 FRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYL 409

Query: 170 ------SLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSK 223
                  +G + + G  V  GY +        + D GW  TGD+G + ADGY  +  R+K
Sbjct: 410 RDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLED-GWLNTGDLGRIDADGYFWLTGRAK 468

Query: 224 DVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTE 283
           D+II GG NI  A +E  L    AV  AA V RPD   GE+P A+V LK         TE
Sbjct: 469 DLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASA----TE 524

Query: 284 KEIIEYCRARLP-RYMVPRKVVFSEELPKTSTGKIQKYLLREFA 326
            E++ + R  +  R  VP+ V   + LPKT+ GKI K  LR  A
Sbjct: 525 AELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDA 568

Length = 632

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score =  132 bits (335), Expect = 6e-35
 Identities = 55/153 (35%), Positives = 75/153 (49%), Gaps = 1/153 (0%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           G V          Y  D E T    + +GW   GD+G +  DGY+ + DR  D+IISGG 
Sbjct: 341 GTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGV 400

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
           NI   E+E++L +   V + AV   PD   GE   A V      +        E+I + R
Sbjct: 401 NIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAA-ELIAWLR 459

Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            RL  Y  PR + F +ELP+T TGK+ K  LR+
Sbjct: 460 GRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRD 492

Length = 502

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  131 bits (331), Expect = 6e-35
 Identities = 62/157 (39%), Positives = 81/157 (51%), Gaps = 6/157 (3%)

Query: 172 GEVVLRGGCVTVG----YFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVII 227
           G++ +R      G    Y KD E T   I    W+ TGD  +   DGY     R+ DVI 
Sbjct: 276 GDIAVRVKPRPPGLFRGYLKDPEKTEATIRG-DWYLTGDRAIKDEDGYFWFVGRADDVIK 334

Query: 228 SGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEII 287
           S G  I   EVES L    AV EAAVV  PD   GE+  AFV L    + +++   KE+ 
Sbjct: 335 SSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEE-LAKELQ 393

Query: 288 EYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
           E+ + R   Y  PR++ F EELPKT +GKI++  LR 
Sbjct: 394 EHVKKRTAPYKYPREIEFVEELPKTVSGKIRRVELRA 430

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  132 bits (334), Expect = 1e-34
 Identities = 73/187 (39%), Positives = 100/187 (53%), Gaps = 12/187 (6%)

Query: 142 RQGVKTVGL----AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS 197
           R G   VG+     EV +V+PE  +    DG   GE+++RG  V  GY+   E T +   
Sbjct: 387 RPG--YVGVPFPDTEVRIVDPEDPDETMPDG-EEGELLVRGPQVFKGYWNRPEETAKSFL 443

Query: 198 DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARP 257
           D GWF TGD+ VM  DG++ I DR K++II+GG N+  AEVE VL     V +AAVV  P
Sbjct: 444 D-GWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLP 502

Query: 258 DMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI 317
                E   A V L+    L      + +  YCR  L RY VPR+    +ELP+   GK+
Sbjct: 503 REDGSEEVVAAVVLEPGAAL----DPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKV 558

Query: 318 QKYLLRE 324
           ++  +RE
Sbjct: 559 RRREVRE 565

Length = 573

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  131 bits (332), Expect = 2e-34
 Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 6/167 (3%)

Query: 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVM 210
            E  +V+PETGES+  +    GE+ +RG  V  GY  + EAT   I  +GW +TGD+G  
Sbjct: 339 VEAKIVDPETGESLPPN--QPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYF 396

Query: 211 HADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVS 270
             DGY+ I DR K++I   G  +  AE+E++L S   + +AAV+  PD   GEIP AFV 
Sbjct: 397 DEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVV 456

Query: 271 LKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI 317
            +   EL    +E E++++   ++  Y   RKVVF + +PK+ +GKI
Sbjct: 457 RQPGSEL----SEDEVMQFVAKQVAPYKKVRKVVFVDAIPKSPSGKI 499

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score =  131 bits (332), Expect = 2e-34
 Identities = 66/189 (34%), Positives = 108/189 (57%), Gaps = 10/189 (5%)

Query: 136 RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC 195
           + +L  +QG    G+ ++ +V  + G  +  DG + G++ +RG  V   YF+   +    
Sbjct: 351 QRKLLEKQGRVIYGV-DMKIVGDD-GRELPWDGKAFGDLQVRGPWVIDRYFRGDASPL-- 406

Query: 196 ISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA 255
              +GWF TGD+  + ADG+++I DRSKDVI SGGE I S ++E+V  +  AV EAA +A
Sbjct: 407 --VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIA 464

Query: 256 RPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTG 315
                W E P   V  +   E+T+    +E++ +   ++ ++ +P  VVF + +P T+TG
Sbjct: 465 CAHPKWDERPLLVVVKRPGAEVTR----EELLAFYEGKVAKWWIPDDVVFVDAIPHTATG 520

Query: 316 KIQKYLLRE 324
           K+QK  LRE
Sbjct: 521 KLQKLKLRE 529

Length = 539

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  130 bits (329), Expect = 5e-34
 Identities = 62/154 (40%), Positives = 89/154 (57%), Gaps = 4/154 (2%)

Query: 171 LGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGG 230
           +GE+V R   +  GY+ + EAT       GWF++GD+     +GYV + DR KD+IISGG
Sbjct: 371 VGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGG 429

Query: 231 ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYC 290
           ENI  AEVE+VL S   + E AV+ R D  WGE+P A  +++ D       T +++ E+ 
Sbjct: 430 ENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAAL---TLEDLAEFL 486

Query: 291 RARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
             RL RY  P+ +   + LP+   GK+ K  LRE
Sbjct: 487 TDRLARYKHPKALEIVDALPRNPAGKVLKTELRE 520

Length = 542

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score =  130 bits (328), Expect = 6e-34
 Identities = 58/153 (37%), Positives = 88/153 (57%), Gaps = 5/153 (3%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           GE+ + G  V  GY+ + EA  +   D GWF TGD+G + A G++ I  R+ D+ ISGG 
Sbjct: 367 GEICVIGPAVFAGYYNNPEANAKAFRD-GWFRTGDLGHLDARGFLYITGRASDMYISGGS 425

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
           N+   E+E  L +  AV+E AV+  PD  WGE+  A V + RD        E E++ +  
Sbjct: 426 NVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVA-VCVARD---GAPVDEAELLAWLD 481

Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            ++ RY +P++  F + LPK+  GKI K ++RE
Sbjct: 482 GKVARYKLPKRFFFWDALPKSGYGKITKKMVRE 514

Length = 528

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  129 bits (327), Expect = 1e-33
 Identities = 79/196 (40%), Positives = 107/196 (54%), Gaps = 13/196 (6%)

Query: 134 PQRARLKARQGVKTVGLAEVD--VVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEA 191
           P R +L+   G+ T G   VD  V++PET E +    V  GE+V+ G  V  GY+   EA
Sbjct: 351 PDRPKLQC-LGIPTFG---VDARVIDPETLEELPPGEV--GEIVVHGPQVFKGYWNRPEA 404

Query: 192 TRRC-ISDNG--WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAV 248
           T    I  +G  +F TGD+G M  +GY  I DR K +I + G  +  AEVE++LY   A+
Sbjct: 405 TAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAI 464

Query: 249 NEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEE 308
            EA V+A PD   GE   A V L+   E   K TE+EII + R  +  Y  PR V F + 
Sbjct: 465 QEACVIATPDPRRGETVKAVVVLRP--EARGKTTEEEIIAWAREHMAAYKYPRIVEFVDS 522

Query: 309 LPKTSTGKIQKYLLRE 324
           LPK+ +GKI    L+E
Sbjct: 523 LPKSGSGKILWRQLQE 538

Length = 546

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  127 bits (320), Expect = 6e-33
 Identities = 66/173 (38%), Positives = 104/173 (60%), Gaps = 6/173 (3%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211
           EV  ++P+TG S+ ++  + GE+ +R  CV  GY+ +KE T R I ++GW +TGDIG + 
Sbjct: 371 EVKFIDPDTGRSLPKN--TPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYID 428

Query: 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSL 271
            DG + I DR K++I   G  +  AE+E++L +  +V +AAVV  PD   GEIP A V +
Sbjct: 429 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVI 488

Query: 272 KRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
                   K +E++I+ +  A +  Y   R V F + +PK+ +GKI + LL+E
Sbjct: 489 NPK----AKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKE 537

Length = 546

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  123 bits (310), Expect = 2e-32
 Identities = 71/186 (38%), Positives = 96/186 (51%), Gaps = 12/186 (6%)

Query: 148 VGL----AEVDVVNPETGESVKRDGVSL--GEVVLRGGCVTVGYFKDKEATRRCISDNGW 201
           VGL      V V   + G ++ RD      G + +RG  V  GY  D       + D GW
Sbjct: 177 VGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLED-GW 235

Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
             TGD+G + ADGY+ +  R+KD+II GG NI    +E  L    AV  AA V RPD + 
Sbjct: 236 LNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYA 295

Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLP-RYMVPRKVVFSEELPKTSTGKIQKY 320
           GE+P A+V LK         TE E++ + +AR+P R  VP+ +   + LP T+ GKI K 
Sbjct: 296 GELPVAYVQLKPG----ATVTEGELLAFVKARIPERAAVPKAIYIIDALPLTAVGKIFKP 351

Query: 321 LLREFA 326
            LR  A
Sbjct: 352 RLRCDA 357

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score =  123 bits (312), Expect = 3e-32
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 5/173 (2%)

Query: 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVM 210
            E  +V+   G  V    V  G++ +RG  +  GY+   E T+R + D GW  TGD    
Sbjct: 269 YEARLVDES-GREVPAGTV--GDLWVRGPSLAPGYWNLPEKTQRTLRD-GWLRTGDRFSR 324

Query: 211 HADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVS 270
            ADG+   + R+ D+I   G+ +   EVE+ L    AV EAAVVA PD        AFV 
Sbjct: 325 DADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVV 384

Query: 271 LKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
            +    + +   E+++  + R RL  Y  PR++ F + LP+T+TGK+Q++ LR
Sbjct: 385 PRPGEAIQQL-LERDLHRFLRERLAPYKCPRQIEFLDTLPRTATGKLQRFRLR 436

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  124 bits (314), Expect = 4e-32
 Identities = 63/172 (36%), Positives = 87/172 (50%), Gaps = 5/172 (2%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211
           EV +V+ + GE V    +  GE+ +RG     GY+  +E TR       W  TGD     
Sbjct: 340 EVKLVDED-GEEVADGEI--GELWVRGDSSAAGYWNRREKTRETFV-GEWTRTGDKYYRD 395

Query: 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSL 271
            DGY     RS D++   G  +   EVE  L    AV EAAVV   D      P AFV L
Sbjct: 396 EDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFVVL 455

Query: 272 KRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
           K   + + +  E E+ ++ + +L  Y  PR + F +ELPKT+TGKIQ++ LR
Sbjct: 456 KDGYQPSPE-LETELKDFVKDKLAPYKYPRWIEFVDELPKTATGKIQRFKLR 506

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  123 bits (310), Expect = 2e-31
 Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 4/153 (2%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           GE+ ++G  V  GY++  EAT   +  +GW  TGDI ++  DGY+ I DR KD+I+  G 
Sbjct: 405 GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGF 464

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
           N+   E+E VL ++  V + A +  PD   GE    FV +K    LTK    ++++E+ R
Sbjct: 465 NVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTK----EQVMEHMR 520

Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
           A L  Y VP+ V F +ELP T+ GKI +  LR+
Sbjct: 521 ANLTGYKVPKAVEFRDELPTTNVGKILRRELRD 553

Length = 562

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  122 bits (306), Expect = 7e-31
 Identities = 68/173 (39%), Positives = 100/173 (57%), Gaps = 7/173 (4%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211
           E  +++ ETGE++   G  +GE+V++G  +  GY+   E T   + D GW +TGD+G M 
Sbjct: 386 EAMIMSLETGEAL-PPG-EIGEIVVKGPQIMKGYWNKPEETAAVLQD-GWLHTGDVGYMD 442

Query: 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSL 271
            DG+  +KDR KD+I++ G N+   EVE VLY    V E   +  PD + GE   AFV L
Sbjct: 443 EDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVL 502

Query: 272 KRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
           K   E     +E+E+ ++ R  L  Y VP+   F +ELPKT+ GKI + +L E
Sbjct: 503 KEGTEC----SEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIE 551

Length = 563

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  121 bits (305), Expect = 1e-30
 Identities = 55/153 (35%), Positives = 76/153 (49%), Gaps = 5/153 (3%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           GE+ +RG  V  GY+   E T      +GW +TGD+     DG+  I DR KD+I++GG 
Sbjct: 366 GEICVRGPLVMDGYWNRPEETAEAFR-DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGF 424

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
           N+   EVE VL    AV + AV+  PD  WGE   A V L+            E+  + +
Sbjct: 425 NVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGA----AVDAAELQAHVK 480

Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            R      P++V F + LP T+ GK  K  LR 
Sbjct: 481 ERKGSVHAPKQVDFVDSLPLTALGKPDKKALRA 513

Length = 524

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  118 bits (298), Expect = 3e-30
 Identities = 71/177 (40%), Positives = 93/177 (52%), Gaps = 13/177 (7%)

Query: 152 EVDVVNPETGESVKRDGVSLGEV----VLRGGCVT-VGYFKDKEATRRCISDNGWFYTGD 206
           EV VV+           V  GEV    V R   V  +GY+ + EAT    +   W  TGD
Sbjct: 270 EVAVVDDAGRP------VPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFA-GDWLLTGD 322

Query: 207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPC 266
           +G   ADGY+  K R+ DVI S G  I  AE+E  L    AV EAAVV  PD   GEI  
Sbjct: 323 LGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVK 382

Query: 267 AFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
           AFV L   +E + +    E+ E  ++RL  +  PR++ F +ELP T+TGKI++  LR
Sbjct: 383 AFVVLAEGVEPSDELAT-ELQELVKSRLAAHEYPREIEFVDELPMTTTGKIRRRELR 438

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score =  119 bits (301), Expect = 4e-30
 Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 20/205 (9%)

Query: 136 RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFK-------- 187
           R   +  QG     L E  +VN   G+ ++    + GE+ +RG  VT  Y+         
Sbjct: 353 RWAYRVSQGRFPASL-EYRIVN--DGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGG 409

Query: 188 --------DKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVE 239
                   D E      + +GW  TGD+G +  DG++ I DR++DVI SGGE I SA++E
Sbjct: 410 AASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLE 469

Query: 240 SVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMV 299
           + + +   V E AV+  PD  WGE P A   L   +E T++ T + + +  R RLP +M+
Sbjct: 470 NYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRE-TAERLRDQLRDRLPNWML 528

Query: 300 PRKVVFSEELPKTSTGKIQKYLLRE 324
           P    F +E+ KTS GK  K  LR+
Sbjct: 529 PEYWTFVDEIDKTSVGKFDKKDLRQ 553

Length = 576

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  119 bits (301), Expect = 4e-30
 Identities = 64/153 (41%), Positives = 89/153 (58%), Gaps = 6/153 (3%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           GE+ ++G  V +GY++  EAT   I D GW  TGDI VM  +G++ I DR KD+I+  G 
Sbjct: 405 GELWVKGPQVMLGYWQRPEATDEVIKD-GWLATGDIAVMDEEGFLRIVDRKKDMILVSGF 463

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
           N+   E+E V+     V E A V  P    GE    FV +K+D  L    TE+E+I +CR
Sbjct: 464 NVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFV-VKKDPSL----TEEELITHCR 518

Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
             L  Y VP+ V F +ELPK++ GKI +  LR+
Sbjct: 519 RHLTGYKVPKLVEFRDELPKSNVGKILRRELRD 551

Length = 560

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  118 bits (298), Expect = 1e-29
 Identities = 66/174 (37%), Positives = 97/174 (55%), Gaps = 6/174 (3%)

Query: 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVM 210
           AE+ +V+PETG S+ R+    GE+ +RG  +  GY  D EAT   I  +GW +TGDIG +
Sbjct: 365 AELKIVDPETGASLPRN--QPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYI 422

Query: 211 HADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVS 270
             D  + I DR K++I   G  +  AE+E++L S  ++ +AAVV   D   GE+P AFV 
Sbjct: 423 DDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVV 482

Query: 271 LKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
                E+    TE EI ++   ++  Y    KV F + +PK  +GKI +  LR 
Sbjct: 483 RSNGSEI----TEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRA 532

Length = 537

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score =  117 bits (295), Expect = 2e-29
 Identities = 59/155 (38%), Positives = 81/155 (52%), Gaps = 7/155 (4%)

Query: 171 LGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGG 230
            G +++RG     GY K            GWF TGD+    A+GY+ I  RSKDVII GG
Sbjct: 390 TGRLLVRGCSNFGGYLKRPHLN--STDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGG 447

Query: 231 ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYC 290
           ENI   E+E++LY   AV + A+VA PD   GE  CA V  K    L        ++ + 
Sbjct: 448 ENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDF----AAMVAFL 503

Query: 291 RA-RLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
           +A ++    +P ++   + LP T  GKIQK+ LRE
Sbjct: 504 KAQKVALQYIPERLEVVDALPATPAGKIQKFRLRE 538

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  116 bits (293), Expect = 2e-29
 Identities = 55/163 (33%), Positives = 76/163 (46%), Gaps = 4/163 (2%)

Query: 165 KRDGVSLGEVVLRGGCVTVGYFK---DKEATRRCISDNGWFYTGDIGVMHADGYVEIKDR 221
           K   V+ GE+ L  G   +G                  G++ TGD      DGY+    R
Sbjct: 270 KEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGR 329

Query: 222 SKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKP 281
           + DV  S    I   EVES L    AV EAAVV  PD     +P A++ LK   E +++ 
Sbjct: 330 ADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPSRE- 388

Query: 282 TEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
              E+  + R RL  Y   R++ F  ELPKT +GKI++  LR+
Sbjct: 389 LALELFAHVRERLAPYKRIRRIEFVGELPKTISGKIRRVELRK 431

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  115 bits (290), Expect = 4e-29
 Identities = 61/141 (43%), Positives = 77/141 (54%), Gaps = 2/141 (1%)

Query: 184 GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLY 243
           GY+ D E T   I    W+ TGD+     DGY     R+ DVIIS G  I   +VES L 
Sbjct: 302 GYWDDPEKTAELI-AGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALL 360

Query: 244 SITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKV 303
              AV EAAVV  PD   GEI  AFV LK     + +  E E+  + + RL  +  PR+V
Sbjct: 361 EHPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAE-ELQLFVKKRLSAHAYPREV 419

Query: 304 VFSEELPKTSTGKIQKYLLRE 324
            F   LPKT +GKIQ++LLR+
Sbjct: 420 EFVPALPKTPSGKIQRFLLRQ 440

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  115 bits (289), Expect = 4e-29
 Identities = 43/104 (41%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFY--TGDIGV 209
           EV V++ E GE V    V  GE+ +RG  V  GY  D E T     ++GW    TGD+G 
Sbjct: 312 EVKVLDEE-GEPVPPGEV--GELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGR 368

Query: 210 MHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAV 253
              DGY+EI  R  D +   GE I   E+E+VL     V EAAV
Sbjct: 369 WDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score =  115 bits (289), Expect = 7e-29
 Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 4/154 (2%)

Query: 172 GEVVLRGGCVTV--GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISG 229
           GE+ L+ G  ++  GY  ++E       D GW+ TGD+     DGY     R+ DVI + 
Sbjct: 291 GELALKPGWPSMFRGYLGNEERYASSFVD-GWYLTGDLAYRDEDGYFWFVGRADDVIKTA 349

Query: 230 GENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEY 289
           G  +   EVES L    AV EA V+ +PD   GEI  AFVSL+   E +++   +E++ +
Sbjct: 350 GHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSEE-LRRELLTF 408

Query: 290 CRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
            R RL   + PR++ F + LPKT +GKI + LL+
Sbjct: 409 ARQRLGAAVAPREIHFVDNLPKTRSGKIMRRLLK 442

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score =  115 bits (289), Expect = 1e-28
 Identities = 65/156 (41%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 172 GEVVLRG---GCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIIS 228
           GE++LR         GYF   E T      N WF+TGD  V  ADG+    DR KD I  
Sbjct: 370 GELLLRADEPFAFATGYFGMPEKTVEAWR-NLWFHTGDRVVRDADGWFRFVDRIKDAIRR 428

Query: 229 GGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIE 288
            GENI S EVE VL S  AV  AAV   P     +   A V L+    L  +P    ++ 
Sbjct: 429 RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTAL--EPV--ALVR 484

Query: 289 YCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
           +C  RL  + VPR V F   LPKT  GK+QK++LRE
Sbjct: 485 HCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLRE 520

Length = 542

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  114 bits (287), Expect = 2e-28
 Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 12/182 (6%)

Query: 147 TVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
            VGL     E  +V+ E G  V  DG ++GE+ +RG  +  GY    +AT    + +GWF
Sbjct: 294 WVGLPLAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWF 352

Query: 203 YTGDIGVMHADGYVEIKDR-SKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
            TGD+ V+  DG   I  R S D+I SGG  I + E+E+ L     V EAAVV  PD   
Sbjct: 353 RTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDL 412

Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
           G+   A+V    D          E+I++   +L  +  PR+V F + LP+ + GK+ K  
Sbjct: 413 GQRIVAYVVGADD------VAADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQ 466

Query: 322 LR 323
           L 
Sbjct: 467 LL 468

Length = 471

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  114 bits (288), Expect = 2e-28
 Identities = 62/157 (39%), Positives = 89/157 (56%), Gaps = 5/157 (3%)

Query: 171 LGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGG 230
           +GE+ ++G  V  GY+K  E T + +  +GW +TGDI  M   G+V I DR KD+I+  G
Sbjct: 408 IGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSG 467

Query: 231 ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYC 290
            N+   E+E V+  +  V E A V  PD   GEI    V +K+D  LT     +++  + 
Sbjct: 468 FNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEI-VKVVIVKKDPALTA----EDVKAHA 522

Query: 291 RARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAK 327
           RA L  Y  PR + F +ELPKT+ GKI +  LR+ AK
Sbjct: 523 RANLTGYKQPRIIEFRKELPKTNVGKILRRELRDAAK 559

Length = 560

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score =  114 bits (287), Expect = 3e-28
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 8/143 (5%)

Query: 184 GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLY 243
           G + + E      +   W+ +GD   M  DGY   + R  DVI + GE +   EVES L 
Sbjct: 417 GIWNNPEKYESYFAG-DWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLM 475

Query: 244 SITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTE---KEIIEYCRARLPRYMVP 300
              AV EA V+ +PD   GEI  AFV+L+   E    P+E   +EI  + +  L  +  P
Sbjct: 476 EHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYE----PSEELKEEIRGFVKKGLGAHAAP 531

Query: 301 RKVVFSEELPKTSTGKIQKYLLR 323
           R++ F ++LPKT +GKI + +L+
Sbjct: 532 REIEFKDKLPKTRSGKIMRRVLK 554

Length = 570

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  112 bits (282), Expect = 1e-27
 Identities = 71/195 (36%), Positives = 98/195 (50%), Gaps = 22/195 (11%)

Query: 140 KARQGVKTVGLAEVDVVNPETGESVK---RDGVSL-----GEVVLRGGCVTVGYFKDKEA 191
            AR G  TVG+       P  G ++K    DG  L     GE+ ++G  V  GY++  EA
Sbjct: 382 LARLG--TVGI-------PVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEA 432

Query: 192 TRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEA 251
           T   +   GWF TGDI V+  DG+V I DR KD+II  G N+   E+E V+ +   V   
Sbjct: 433 TAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANC 492

Query: 252 AVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPK 311
           A +  PD   GE    FV + RD  L+     +E+  YC+     Y VP+ +V  + LP 
Sbjct: 493 AAIGVPDERSGEAVKLFV-VARDPGLSV----EELKAYCKENFTGYKVPKHIVLRDSLPM 547

Query: 312 TSTGKIQKYLLREFA 326
           T  GKI +  LR+ A
Sbjct: 548 TPVGKILRRELRDIA 562

Length = 562

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  111 bits (280), Expect = 2e-27
 Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 11/182 (6%)

Query: 147 TVGL----AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
           TVG     AE+  V+ E G  + +  +  GE+  R        + +K   R  I   G+ 
Sbjct: 325 TVGKAAPGAELRFVD-EDGRPLPQGEI--GEIYSRIAGNPDFTYHNKPEKRAEIDRGGFI 381

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
            +GD+G + ADGY+ + DR +D++ISGG NI  AE+E+VL+++  V++ AV   PD  +G
Sbjct: 382 TSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFG 441

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
           E   A V  +    L     E +I    +ARL  Y VP+ +    ELP+  +GKI K  L
Sbjct: 442 EALMAVVEPQPGATL----DEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRL 497

Query: 323 RE 324
           R+
Sbjct: 498 RD 499

Length = 509

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score =  110 bits (277), Expect = 4e-27
 Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 8/156 (5%)

Query: 170 SLGEVVLRG--GCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVII 227
             G + +RG  GC    Y  D+   ++    +GW  TGDI     DGY     RS D+I+
Sbjct: 338 EAGRLAVRGPTGC---RYLDDER--QQEYVRDGWNVTGDIFRQDEDGYFHYVARSDDMIV 392

Query: 228 SGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEII 287
           S G NI + EVE  L +   V E AV+  PD   G+I CA + L RD     +   + + 
Sbjct: 393 SAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQIVCAHIVL-RDGTKATELLAERLQ 451

Query: 288 EYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
           ++ +A +  Y  PR++ F + LPKT TGKIQ++ LR
Sbjct: 452 DFVKAVIAPYKYPREINFVDALPKTQTGKIQRFRLR 487

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score =  110 bits (276), Expect = 5e-27
 Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 9/144 (6%)

Query: 184 GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLY 243
           GY       R  ++ +GW    D+G    +G++ I  R K++I+ GG NI   E+ESVL+
Sbjct: 346 GYIIGGVLARE-LNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLH 404

Query: 244 SITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKV 303
              AV+E  V+  PD +WGE P A +            T++++  +C  RL  + +P++ 
Sbjct: 405 EHPAVDEIVVIGVPDSYWGEKPVAIIK--------GSATKQQLKSFCLQRLSSFKIPKEW 456

Query: 304 VFSEELPKTSTGKIQKYLLREFAK 327
            F +E+P T++GKI +   + + +
Sbjct: 457 HFVDEIPYTNSGKIARMEAKSWIE 480

Length = 487

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score =  110 bits (276), Expect = 7e-27
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 4/140 (2%)

Query: 184 GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLY 243
            Y+ D +AT + +  +GW +TGD G +  +G+    DR  ++I  GGEN+   E+E+++ 
Sbjct: 382 EYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIA 441

Query: 244 SITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKV 303
           +   + +  VV   D    E   AFV L     L    +E+E   +C   + ++ VP  +
Sbjct: 442 THPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETL----SEEEFFAFCEQNMAKFKVPSYL 497

Query: 304 VFSEELPKTSTGKIQKYLLR 323
              ++LP+  +GKI K  L+
Sbjct: 498 EIRKDLPRNCSGKIIKKNLK 517

Length = 517

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  107 bits (270), Expect = 5e-26
 Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 12/176 (6%)

Query: 148 VGL----AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFY 203
           VGL     E  + + ETGE +   G   GE+V+R   +  GY+   EAT   + D GW +
Sbjct: 389 VGLPVPGTEFKICDFETGELLPL-GAE-GEIVVRTPSLLKGYWNKPEATAEALRD-GWLH 445

Query: 204 TGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGE 263
           TGDIG +   G++    R K+++   G ++  +EVE++L    AV  +AVV RPD   G+
Sbjct: 446 TGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQ 505

Query: 264 IPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQK 319
           +P AFV LK   +L    T   +  +CR  +  Y VP ++   + LP T+TGK++K
Sbjct: 506 VPVAFVQLKPGADL----TAAALQAWCRENMAVYKVP-EIRIVDALPMTATGKVRK 556

Length = 567

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  107 bits (269), Expect = 6e-26
 Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 9/174 (5%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211
           EV VV+ + G  V    V  GE++ RG     GY++  E   R    +G++ +GD+    
Sbjct: 369 EVRVVDAD-GNPVAPGEV--GELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRD 425

Query: 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSL 271
            DGY+ ++ R KD I  GGE I + EVE++L    AV++AA+VA PD   GE  CAF+ +
Sbjct: 426 PDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVV 485

Query: 272 KRDLELTKKPTEKEIIEYCRAR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
           K            ++  + R R L  + +P ++ F + LP T+ GKI K  LR 
Sbjct: 486 KE-----PPLRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRR 534

Length = 542

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score =  106 bits (266), Expect = 1e-25
 Identities = 63/180 (35%), Positives = 91/180 (50%), Gaps = 9/180 (5%)

Query: 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVM 210
           A++ +V  + G  +    V  GEV LRG  V  GY  D   T    +D GW  TGD+G +
Sbjct: 363 AQIRIVGSD-GLPLPAGAV--GEVWLRGTTVVRGYLGDPTITAANFTD-GWLRTGDLGSL 418

Query: 211 HADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVS 270
            A G + I+ R K++I  GGE I    VE VL S   V EAAV   PD  +GE   A + 
Sbjct: 419 SAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIV 478

Query: 271 LKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE-FAKSV 329
            +     +  PT +E++++CR RL  + +P     +  LP T+ G + +  + E F  SV
Sbjct: 479 PRE----SAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGHSV 534

Length = 534

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  106 bits (265), Expect = 2e-25
 Identities = 73/218 (33%), Positives = 112/218 (51%), Gaps = 11/218 (5%)

Query: 118 VDHLHTYLLLEALSLFPQRARLKARQGVKTVGL----AEVDVVNPETGESVKRDGVSLGE 173
           VD +  Y + E+ ++  +    +      +VGL     +  VV+  TG  +       GE
Sbjct: 346 VDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNC--GE 403

Query: 174 VVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENI 233
           + ++G  V  GY  + +AT+  I  +GW  TGDI     DGY+ I DR K++I   G  I
Sbjct: 404 LWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQI 463

Query: 234 CSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR 293
             A++E+VL S   + +AAV A PD   GEIP AFV  ++   L    +++ +I Y   +
Sbjct: 464 APADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTL----SQEAVINYVAKQ 519

Query: 294 LPRYMVPRKVVFSEELPKTSTGKI-QKYLLREFAKSVS 330
           +  Y   RKVVF + +PK+  GKI ++ L R    SVS
Sbjct: 520 VAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSVS 557

Length = 560

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score =  105 bits (263), Expect = 4e-25
 Identities = 53/141 (37%), Positives = 72/141 (51%), Gaps = 2/141 (1%)

Query: 185 YFKDKEATRRCIS-DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLY 243
           Y  D   T      D  W   GDIG +  DGY+ + DR+  +IISGG NI   E E++L 
Sbjct: 366 YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLI 425

Query: 244 SITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKV 303
           +   V +AAV   P+   GE   A V     ++        E+I +CR RL R   PR +
Sbjct: 426 THPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAA-ELIAFCRQRLSRQKCPRSI 484

Query: 304 VFSEELPKTSTGKIQKYLLRE 324
            F +ELP+  TGK+ K LLR+
Sbjct: 485 DFEDELPRLPTGKLYKRLLRD 505

Length = 511

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  105 bits (262), Expect = 5e-25
 Identities = 62/172 (36%), Positives = 90/172 (52%), Gaps = 5/172 (2%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211
           E+DVV+ +    V   G  +GE+ +RG  VT GY+   E +         F TGDIG M 
Sbjct: 375 ELDVVSLDDPTKVLPPG-EVGELRIRGPNVTRGYWNRPEESAEAFVG-DRFLTGDIGYMD 432

Query: 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSL 271
            DGY  + DR KD+IISGG N+    +E  +Y    V E  V+  PD + GE   AFV L
Sbjct: 433 TDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKL 492

Query: 272 KRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
           +      K  +  E+  +   +L ++ +P  V F +ELP+T  GK+ ++ LR
Sbjct: 493 R---PGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  104 bits (259), Expect = 1e-24
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 14  PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAP 73
                    R                  T++E ++R  ++   L ++G+  G  V+ +  
Sbjct: 1   LERAAALFGRKEVVSR---LHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGF 57

Query: 74  NVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLF 133
           N     E  F VP  GA+L+  N RL    ++ +L H+E K++  D     L+       
Sbjct: 58  NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL 117

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score =  104 bits (260), Expect = 1e-24
 Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 9/182 (4%)

Query: 143 QGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
           QG       EV VV+ + G  V       G ++ RG     GY+K  E         G++
Sbjct: 353 QGRPMSPDDEVRVVD-DHGNPVAPG--ETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFY 409

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
           YTGD+  +  +GY+ +  R+KD I  GGE I + E+E++L +  AV++AA+V+ PD   G
Sbjct: 410 YTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLG 469

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRAR-LPRYMVPRKVVFSEELPKTSTGKIQKYL 321
           E  CAF+ ++            ++  + R R L  Y +P +V F + LP T+ GK+ K  
Sbjct: 470 EKSCAFIVVR-----DPALKAAQLRRFLRERGLAEYKLPDRVEFVDSLPLTAVGKVDKKA 524

Query: 322 LR 323
           LR
Sbjct: 525 LR 526

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score =  103 bits (260), Expect = 1e-24
 Identities = 52/129 (40%), Positives = 70/129 (54%), Gaps = 1/129 (0%)

Query: 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM 259
           G+++TGD      DGY+ I  R  DVI   G  + +AE+ES L S  AV EAAVV  PD 
Sbjct: 475 GYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDD 534

Query: 260 FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQK 319
             G+   AFV+LK   E   +   KE+ ++ R  +     P K+ F   LPKT +GKI +
Sbjct: 535 IKGQAIYAFVTLKDGYEPDDE-LRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMR 593

Query: 320 YLLREFAKS 328
            LLR+ A  
Sbjct: 594 RLLRKIAAG 602

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  103 bits (258), Expect = 1e-24
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 8/149 (5%)

Query: 172 GEVVLRGGCVTVGYFKDKEAT-RRCISDNG--WFYTGDIGVMHADGYVEIKDRSKDVIIS 228
           GE+V+ G  V+ GY  + E T +    D G  W+ TGD+  +  DG +    R    I  
Sbjct: 299 GELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKL 358

Query: 229 GGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIE 288
            G  I   E+E+ L ++  V EA V+  P         AFV  K     TK      + +
Sbjct: 359 HGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGALDTK-----ALKK 413

Query: 289 YCRARLPRYMVPRKVVFSEELPKTSTGKI 317
             + RLP YM+PR+ V+ + LP  + GKI
Sbjct: 414 ELKKRLPPYMIPRRFVYLDSLPLNANGKI 442

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score =  103 bits (259), Expect = 1e-24
 Identities = 53/126 (42%), Positives = 69/126 (54%), Gaps = 4/126 (3%)

Query: 199 NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPD 258
           +G   +GD+G    DG + +  R  D+I+SGGEN+  AEVE +L     V EAAV+   D
Sbjct: 426 DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDD 485

Query: 259 MFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQ 318
             +G+   AFV       L     E  I +Y R  L RY VPR VVF +ELP+  TGK+ 
Sbjct: 486 EEFGQRLRAFVVKAPGAAL----DEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVL 541

Query: 319 KYLLRE 324
           K  LRE
Sbjct: 542 KRELRE 547

Length = 549

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score =  103 bits (260), Expect = 2e-24
 Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 1/131 (0%)

Query: 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM 259
           G+++TGD      DGY  I  R  DVI   G  + +AEVES L S  AV EAAVV +PD 
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDE 522

Query: 260 FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQK 319
             GE   AFV+LK  +E + +   KE+ ++ R  +     P +++F   LPKT +GKI +
Sbjct: 523 VKGEAIYAFVTLKDGVEPSDE-LRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMR 581

Query: 320 YLLREFAKSVS 330
            +LR+ A    
Sbjct: 582 RILRKIAAGEE 592

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  100 bits (252), Expect = 4e-24
 Identities = 48/143 (33%), Positives = 68/143 (47%), Gaps = 7/143 (4%)

Query: 177 RGGCVTVGYFKDKEATR---RCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENI 233
           RGG V +GY+KD E T    R I    +   GD   + ADG + +  R    I +GGE +
Sbjct: 220 RGGRVPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKV 279

Query: 234 CSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR 293
              EVE  L +   V +A VV  PD  WG+   A V     L         E+ ++CR  
Sbjct: 280 FPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVVQ----LRAGAGLDLAELRDHCRQH 335

Query: 294 LPRYMVPRKVVFSEELPKTSTGK 316
           L  Y +PR +V  + +P+  +GK
Sbjct: 336 LAGYKLPRAIVVVDTVPRAPSGK 358

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score =  101 bits (254), Expect = 4e-24
 Identities = 56/169 (33%), Positives = 77/169 (45%), Gaps = 7/169 (4%)

Query: 151 AEVDVVNPETGESVKRDGVSLGE-VVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGV 209
           +EV +V               GE VV        GY    +AT   + D GW+ T D+ V
Sbjct: 327 SEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQD-GWYRTSDVAV 385

Query: 210 MHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFV 269
           +   G V I  R  D+IISGGENI  +EVE VL     V E  V+  PD  WG+   A V
Sbjct: 386 VDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACV 445

Query: 270 SLKRDLELTKKPTEKEIIEYCRA-RLPRYMVPRKVVFSEELPKTSTGKI 317
             +      +  +   +  +CRA  L  +  PR+  F +ELPK +  K+
Sbjct: 446 VPR----EGETLSADALDTFCRASELADFKRPRRYFFLDELPKNAMNKV 490

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  101 bits (254), Expect = 4e-24
 Identities = 37/89 (41%), Positives = 59/89 (66%), Gaps = 3/89 (3%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVII-SGG 230
           GE+++RG  V  GY+K+ EAT   + ++GW +TGDIG +  DG++ I DR KD+I+ +GG
Sbjct: 283 GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGG 342

Query: 231 ENICSAEVESVLYSITAVNEAAVV--ARP 257
           +NI    +E+ L +   +++A VV   RP
Sbjct: 343 KNIAPQPIENALKASPYISQAVVVGDDRP 371

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  101 bits (254), Expect = 6e-24
 Identities = 64/160 (40%), Positives = 84/160 (52%), Gaps = 9/160 (5%)

Query: 172 GEVVLRGG-----CVTVGYFKDKEATRRCISDNGWFY-TGDIGVMHADGYVEIKDRSKDV 225
           G++ +R       C+   Y  + E T   I  +  FY TGD G+M  DGY     R+ DV
Sbjct: 370 GDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGD--FYITGDRGIMDEDGYFWFVGRADDV 427

Query: 226 IISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRD-LELTKKPTEK 284
           I S G  I   EVES L    AV E+AVV+ PD   GE+  AFV L    L    +   K
Sbjct: 428 INSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFVVLAPQFLSHDPEQLTK 487

Query: 285 EIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
           E+ E+ ++    Y  PRKV F +ELPKT TGKI++  LR+
Sbjct: 488 ELQEHVKSVTAPYKYPRKVEFVQELPKTITGKIKRNELRD 527

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score =  100 bits (250), Expect = 3e-23
 Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 153 VDVVNPETGESVKRDGVSLGEVVLRG----GCVTVGYFKDKEATRRCISDN--GWFYTGD 206
           V V++ ETGE +      LG +V++     GC  +  + D E  ++   +   G++ TGD
Sbjct: 412 VQVLD-ETGEELGPG--ELGNIVIKLPLPPGC-LLTLWGDDERFKKLYLNKFPGYYDTGD 467

Query: 207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPC 266
            G    DGY+ +  R+ DVI   G  + + E+E  +     V E AVV   D   G++P 
Sbjct: 468 SGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPL 527

Query: 267 AFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFA 326
             V LK D ++     E EI+   R ++      R VVF + LPKT +GKI +  LR+ A
Sbjct: 528 GLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNVVFVKRLPKTRSGKILRRTLRKIA 587

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score =   99 bits (250), Expect = 3e-23
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 7/143 (4%)

Query: 177 RGGCVTVGYFKDKEATR---RCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENI 233
           R G + +GY+KD E T      I    +   GD   + ADG + +  R    I +GGE +
Sbjct: 382 RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKV 441

Query: 234 CSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR 293
              EVE  L +   V +A VV  PD  WG+   A V L+       +P   E+  +CR+ 
Sbjct: 442 FPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREG----ARPDLAELRAHCRSS 497

Query: 294 LPRYMVPRKVVFSEELPKTSTGK 316
           L  Y VPR + F +E+ ++  GK
Sbjct: 498 LAGYKVPRAIWFVDEVQRSPAGK 520

Length = 533

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 99.4 bits (248), Expect = 3e-23
 Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 10/179 (5%)

Query: 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVM 210
           A V   +P+ G ++  DG S GE+ +R   +  GY  + +AT R ++D+G+F TGD+G  
Sbjct: 359 ARVRARDPQDG-ALLPDGES-GEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYT 416

Query: 211 HADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVS 270
             DG    + R  D +  GG  +  AE+E  L ++  V  A VV         +P AFV 
Sbjct: 417 RGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVG-ATRDGKTVPVAFVI 475

Query: 271 LKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTG---KIQKYLLREFA 326
                     P E  ++  CR  L  + VP +V   E  P T +    KIQK+ LRE A
Sbjct: 476 ----PTDGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMA 530

Length = 540

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 99.4 bits (248), Expect = 4e-23
 Identities = 61/168 (36%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 159 ETGESVKR--DGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYV 216
           E GE V R  DG  LG        + +GY++D E T     D G+++TGD   M  DGY+
Sbjct: 378 EEGEIVIRTSDGKPLG--------LFMGYYRDPERTAEVWHD-GYYHTGDTAWMDEDGYL 428

Query: 217 EIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLE 276
               R+ D+I S G  I   EVES L    AV E AV   PD   G++  A + L +  E
Sbjct: 429 WFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYE 488

Query: 277 LTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            +++  +KE+ ++ +     Y  PR + F +ELPKT +GKI++  +RE
Sbjct: 489 PSEE-LKKELQDHVKKVTAPYKYPRIIEFVDELPKTISGKIRRVEIRE 535

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 98.7 bits (246), Expect = 7e-23
 Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 18/188 (9%)

Query: 146 KTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF--- 202
           K +  AEV V+  +  E    +    GE+V RG  V +GY+ D E T         F   
Sbjct: 334 KAIPNAEVLVLREDGSECAPGE---EGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGE 390

Query: 203 --------YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
                   ++GD      +G++    R  ++I + G  +   EVE V Y+   V EA   
Sbjct: 391 LHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAF 450

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
             PD   G+     V+     EL +      ++  CRARLP YMVP  +   + LP+ + 
Sbjct: 451 GVPDPTLGQAIVLVVTPPGGEELDRA----ALLAECRARLPNYMVPALIHVRQALPRNAN 506

Query: 315 GKIQKYLL 322
           GKI +  L
Sbjct: 507 GKIDRKAL 514

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 96.8 bits (241), Expect = 3e-22
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 14  PLTTLGFLERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVV 71
            LT    LERAA    D P+L++       T+ E  RR  ++A++L ++G++ G  V+++
Sbjct: 10  ELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAIL 69

Query: 72  APNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS 131
            PN P           +GA+   +N RL    L+ +L  + +K++        LL     
Sbjct: 70  LPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAE 129

Query: 132 LFPQRARL 139
             P    +
Sbjct: 130 ALPVVLVV 137

Length = 534

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 96.8 bits (241), Expect = 3e-22
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           G ++ RG  V +GY+     T   +S++GW  TGDIG +   G + +  RS D I +GGE
Sbjct: 386 GRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGE 445

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLK-------RDLELTKKP--- 281
           N+   EVE+VL     V    VV  PD    E+  A V L+        + E  KK    
Sbjct: 446 NVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTL 505

Query: 282 TEKEIIEYCRAR-LPRYMVPRK-VVFSEELPKTSTGKIQKYLLR 323
           + + +  +CR + L R+ +P+  V + +  P T+TGKI++  +R
Sbjct: 506 SSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVR 549

Length = 563

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 95.2 bits (238), Expect = 1e-21
 Identities = 48/128 (37%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM 259
           G ++TGD      DGY  I  R  DV+   G  + +AE+ES L +   V EAAVV RPD 
Sbjct: 483 GMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDD 542

Query: 260 FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQK 319
             G+   AFV+LK   E + +   KE+  + R  +     P  + F+  LPKT +GKI +
Sbjct: 543 IKGQGIYAFVTLKGGEEPSDE-LRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMR 601

Query: 320 YLLREFAK 327
            +LR+ A+
Sbjct: 602 RILRKIAE 609

Length = 637

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 63/179 (35%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 153 VDVVNPETGESVKRDGVSLGEVVLRGGCV--TVGYFKDKEATRRCIS------DNGWFYT 204
            DVV+ + G  V R  V  GE+V+R      T G+++D E   R +          W + 
Sbjct: 288 ADVVDED-GRPV-RGEV--GELVVRAPWPGMTRGFWRDPE---RYLETYWSRFPGVWVH- 339

Query: 205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEI 264
           GD  ++  DGY  I  RS D I   G+ +  AE+ESVL S  AV EAA +  PD   GE 
Sbjct: 340 GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEA 399

Query: 265 PCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
              FV LK  +  +    E E+ ++    L +   PR+V F  +LPKT  GKI + ++R
Sbjct: 400 IVCFVVLKPGVTPSAA-LEAELADHVGDALGKPFRPREVHFVSDLPKTRNGKIMRRVIR 457

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 49/182 (26%), Positives = 90/182 (49%), Gaps = 14/182 (7%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211
           E+ +V+ + GE +  D   +G + ++G  VT GY+ + EAT++ I+ +GW  TGD+G + 
Sbjct: 324 EIRIVD-DAGEVLP-DRT-IGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLR 380

Query: 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA---RPDMFWGEIPCAF 268
            +G + I  R+KD+II  G+N    ++E V   +  +    V A     +    E    F
Sbjct: 381 -NGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIF 439

Query: 269 VSLKRDLELTKKPTE--KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFA 326
           V  ++ L+         K  +         +++P +      +PKT++GKIQ+Y L +  
Sbjct: 440 VEYRQSLDDFTPLALKIKRHVNKKMGLNIDHVIPVR-----SIPKTTSGKIQRYKLAQQF 494

Query: 327 KS 328
            +
Sbjct: 495 LN 496

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 10/178 (5%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211
           EV V +   G  + +    +G ++ RG     GY+K  +        NG++ +GD+  + 
Sbjct: 364 EVWVAD-ADGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSID 420

Query: 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSL 271
            DGY+ +  R KD I  GGE I + E+E++L    AV  AA+V+  D   GE  CAF+ +
Sbjct: 421 PDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVV 480

Query: 272 KRDLELTKKPTEKEIIEYCRAR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328
           K  L    K    ++  + R + +  + +P +V   + LP T+ GK+ K  LR++  S
Sbjct: 481 KEPL----KAV--QLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 532

Length = 536

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 92.1 bits (229), Expect = 1e-20
 Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 4/125 (3%)

Query: 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM 259
           G+  +GD+G +  +G + +  R  ++I+SGGEN+   EVE  L +   V EAAV+   D 
Sbjct: 416 GFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDE 475

Query: 260 FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQK 319
            +G+   AFV LK         T + + ++ R  L  Y VPR +V  +ELP+ +TGKI +
Sbjct: 476 QYGQRLAAFVVLKPGASA----TPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILR 531

Query: 320 YLLRE 324
             L+ 
Sbjct: 532 RELQA 536

Length = 537

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 91.5 bits (228), Expect = 1e-20
 Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 12/179 (6%)

Query: 155 VVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC-ISDNGW--------FYTG 205
           V++P+    V    V  GE+ + G  V  GY    E T    I D  W        + TG
Sbjct: 271 VLDPDLEPLVPIGAV--GELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTG 328

Query: 206 DIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIP 265
           D+     DG +E   R  D +   G+ I   E+E+VL ++  V  AAVV   D   G+  
Sbjct: 329 DLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGVVVAAVVLLLDDPGGKQL 388

Query: 266 CAFVSLKR-DLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
            AF+++               +    R RLP YMVP   V  +ELP T++GK+ +  LR
Sbjct: 389 VAFLAVDGAAGGEPADVDIALLRSALRERLPSYMVPSVYVPLDELPLTASGKVDRKALR 447

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 91.2 bits (226), Expect = 2e-20
 Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 1/123 (0%)

Query: 201 WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMF 260
           W   GD+G +  DGY+ + DR   +IISGG NI   E E+ L    AV++ AV+  PD  
Sbjct: 380 WTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPE 439

Query: 261 WGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKY 320
            GE   A + L   +  + +   +E+I+Y R+R+  Y  PR V F +ELP+T TGK+ K 
Sbjct: 440 MGEQVKAVIQLVEGIRGSDE-LARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKG 498

Query: 321 LLR 323
           LLR
Sbjct: 499 LLR 501

Length = 501

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 91.1 bits (227), Expect = 3e-20
 Identities = 62/232 (26%), Positives = 89/232 (38%), Gaps = 45/232 (19%)

Query: 123 TYLLLEALSLFPQRARLKARQGVKTVGLA---------EVDVVNPETGESVKRDGVSLGE 173
             L ++  +L    A + A  G     L          EV +V+PET   +    V  GE
Sbjct: 327 VVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVDPETRRPLPDGEV--GE 384

Query: 174 VVLRGGCVTVGYFKDKEATRRC------ISDNGWFYTGDIGVMHADGYVEIKDRSKDVII 227
           + +RG  V  GY+   EAT           + GW  TGD+G +H DG + +  R KD+II
Sbjct: 385 IWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLH-DGELYVTGRLKDLII 443

Query: 228 SGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRD----------LEL 277
             G N    ++E+ +                        A  S+  D          +  
Sbjct: 444 IRGRNHYPQDIEATVERAHPALRPGA------------AAAFSVDGDGEERLVVVAEVRR 491

Query: 278 TKKPTE-KEIIEYCRARLPRYM--VPRKVVFSE--ELPKTSTGKIQKYLLRE 324
              P +   + E  RA + R     P  VV      LPKTS+GKIQ+   RE
Sbjct: 492 RGLPADLAALAEAIRAAVAREHGVAPADVVLVRPGTLPKTSSGKIQRRACRE 543

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 88.7 bits (220), Expect = 1e-19
 Identities = 53/153 (34%), Positives = 78/153 (50%), Gaps = 2/153 (1%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           GE+++ G      Y+ ++  TR       W  +GD  V + DG      R+ D++   G 
Sbjct: 357 GELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGI 415

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
            +   E+ES L    AV EAAVV   D      P AF+ L+   +      E E+ E+ +
Sbjct: 416 YVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQD-IDTALETELKEHVK 474

Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            RL  Y  PR +VF ++LPKT+TGKIQ++ LRE
Sbjct: 475 DRLAPYKYPRWIVFVDDLPKTATGKIQRFKLRE 507

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 88.3 bits (220), Expect = 2e-19
 Identities = 50/160 (31%), Positives = 65/160 (40%), Gaps = 25/160 (15%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWF-------Y-TGDIGVMHADGYVEIKDRSK 223
           GE+ + G  V  GY    E T      +  F       Y TGD+     DG +E   R+ 
Sbjct: 292 GELYIGGAGVARGYLNRPELTAERFVPD-PFGGPGERLYRTGDLARWLPDGNLEFLGRAD 350

Query: 224 D-VIISG-----GENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLEL 277
           D V I G     GE      +E+ L +   V EA VVAR D    +   A+V      E 
Sbjct: 351 DQVKIRGYRIELGE------IEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAE- 403

Query: 278 TKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI 317
                  E+  +   RLP YMVP   V  + LP T  GK+
Sbjct: 404 ---LDAAELRAFLAERLPDYMVPSAFVVLDALPLTPNGKV 440

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVII-SGG 230
           GE+++RG  V  GY+K+ EAT    +++GWF TGD+G +  DGY+ I  R K++I  S G
Sbjct: 421 GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNG 480

Query: 231 ENICSAEVESVLYSITAVNEAAVVA 255
           +NI    +ES L     + +  VV 
Sbjct: 481 KNIAPEPIESKLAKSPLIEQICVVG 505

Length = 613

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 33/189 (17%)

Query: 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVM 210
             + +V+ E G  +    V  G + +RG  VT GY+++ EA     +++GWF TGD+G +
Sbjct: 383 VAIRIVD-EDGALLPEGEV--GRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL 439

Query: 211 HADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVS 270
           H DG + I  R KD+II  G N  + E+E+ +  +  V  +   A          CA   
Sbjct: 440 H-DGRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAA----------CAVRD 488

Query: 271 LKRD---LELTKKPTEKE------IIEYCRARL-------PRYMVPRKVVFSEELPKTST 314
                  L +   P          ++   R  +       P Y++P   +  E+ PKTS 
Sbjct: 489 AGSGTDELAVFFVPRYDLDDRLAALLRAIRTHVARKIGIAPAYVIP---LAKEDFPKTSL 545

Query: 315 GKIQKYLLR 323
           GKIQ+  LR
Sbjct: 546 GKIQRAQLR 554

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 15/184 (8%)

Query: 153 VDVVNPETGESVKR-----DGV------SLGEVVLRGGCVT-VGYFKDKEATRRCISDNG 200
           V + NPET            G       ++GE+V   G     GY+ + EAT   +  +G
Sbjct: 322 VAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMR-HG 380

Query: 201 WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMF 260
            +++GD+    ADG++    R+ D +   GEN+ +A +E +L    A+N  AV A PD  
Sbjct: 381 MYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDER 440

Query: 261 WGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKY 320
            G+   A + L+        P         +  L     PR V  + +LP T+T K+ K 
Sbjct: 441 VGDQVMAALVLRDGATFD--PDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKR 498

Query: 321 LLRE 324
            L  
Sbjct: 499 ELIA 502

Length = 540

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 11/143 (7%)

Query: 184 GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLY 243
           GY+     ++        F T D+G + A GY+ I  R+   II+GGEN+  AEVE+ + 
Sbjct: 314 GYYPQILDSQGI------FETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAIL 367

Query: 244 SITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKV 303
           +   V +  V+  PD  WGE+  A    K         + +E+    + +L  +  P+  
Sbjct: 368 ATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-----SISLEELKTAIKDQLSPFKQPKHW 422

Query: 304 VFSEELPKTSTGKIQKYLLREFA 326
           +   +LP+   GKI +  L++ A
Sbjct: 423 IPVPQLPRNPQGKINRQQLQQIA 445

Length = 452

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 85.9 bits (213), Expect = 1e-18
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 18/187 (9%)

Query: 151 AEVDVVNPETGESVKR-----DGV-----SLGEVV-LRGGCVTVGYFKDKEATRRCISDN 199
             V +V+P+TG            +     ++GE+V   G     GY+ D EA    +   
Sbjct: 322 PGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRG- 380

Query: 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM 259
           G +++GD+    ADGY     R  D +   GEN+ +A +E +L       E AV A PD 
Sbjct: 381 GVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDP 440

Query: 260 FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR--LPRYMVPRKVVFSEELPKTSTGKI 317
             G+   A + L    +    P      E+  A+  L     P  V    ELP+T+T K+
Sbjct: 441 VVGDQVMAALVLAPGAKFD--PDAFA--EFLAAQPDLGPKQWPSYVRVCAELPRTATFKV 496

Query: 318 QKYLLRE 324
            K  L  
Sbjct: 497 LKRQLSA 503

Length = 529

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 84.1 bits (209), Expect = 5e-18
 Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 13/158 (8%)

Query: 166 RDGVSLGEVVLRGGCVTVGYFKDKEATRR----CISDNG--WFYTGDIGVMHADGYVEIK 219
             GV  GE+ + G  + +GY    E T           G   + TGD+     DG +E  
Sbjct: 319 PIGVP-GELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFL 377

Query: 220 DRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTK 279
            R    +   G  I   E+E  L     V EAAV+ R D    +   A+V  +  L    
Sbjct: 378 GRIDRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGAL---- 433

Query: 280 KPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI 317
                E+  +   RLP YMVP   V  +ELP T+ GK+
Sbjct: 434 --DAAELRAHLAERLPAYMVPAAFVVLDELPLTANGKV 469

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 29/180 (16%)

Query: 153 VDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHA 212
           VDV  PE G   K D    GE+ +RG  V  GY+K+ E T     ++GWF+TGDIG    
Sbjct: 335 VDV--PEMGYFAK-DDPPRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLP 391

Query: 213 DGYVEIKDRSKDVI-ISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSL 271
           DG ++I DR K++  +S GE +   ++E++  S   V++  V       +     A V  
Sbjct: 392 DGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLKSF---LVAIVVP 448

Query: 272 KRDL----------------ELTKKP-TEKEIIE-----YCRARLPRYMVPRKVVFSEEL 309
             D+                EL      +K I++          L  + + + +  + E 
Sbjct: 449 DEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGLKGFEIVKAIHLTPEP 508

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 80.3 bits (199), Expect = 9e-17
 Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 16/178 (8%)

Query: 147 TVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATR-RCISDNGW 201
           TVG      EV +V+PET E +   G   G +++RG  V  GY  ++E T    +  +GW
Sbjct: 312 TVGRPLPGIEVRIVSPETHEELP-IGEG-GLLLVRGPNVMSGYLNNEEKTSEVEVLGDGW 369

Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEA-AVVARPDMF 260
           + TGDIG +  DG++ I  R K     GGE +    VE +L  I   +   A V  PD  
Sbjct: 370 YDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVPDEK 429

Query: 261 WGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYMVPRKVVFSEELPKTSTGKI 317
            GE      +       T+    +E+    R A LP   VPRK++  +E+P   +GK 
Sbjct: 430 KGEKIVLLTT-------TEDLDPEELNAILREAGLPNLAVPRKILHVDEIPLLGSGKT 480

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 80.7 bits (200), Expect = 1e-16
 Identities = 59/197 (29%), Positives = 84/197 (42%), Gaps = 25/197 (12%)

Query: 147  TVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATR---RCISDN 199
            +VG+      V +V+PET E +   G   G +++ G  V  GY  D E T    + I   
Sbjct: 961  SVGMPLPGVAVRIVDPETFEELP-PGED-GLILIGGPQVMKGYLGDPEKTAEVIKDIDGI 1018

Query: 200  GWFYTGDIGVMHADGYVEIKDR----SKDVIISGGENICSAEVESVLYSI--TAVNEAAV 253
            GW+ TGD G +  DG++ I DR    +K  I  GGE +    VE  L           AV
Sbjct: 1019 GWYVTGDKGHLDEDGFLTITDRYSRFAK--I--GGEMVPLGAVEEELAKALGGEEVVFAV 1074

Query: 254  VARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTS 313
             A PD   GE     V L        +  ++ I E   + LP    P +    E LP   
Sbjct: 1075 TAVPDEKKGE---KLVVLHTCGAEDVEELKRAIKE---SGLPNLWKPSRYFKVEALPLLG 1128

Query: 314  TGKIQKYLLREFAKSVS 330
            +GK+    L+E A ++ 
Sbjct: 1129 SGKLDLKGLKELALALL 1145

Length = 1146

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 29/129 (22%), Positives = 50/129 (38%)

Query: 42  TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 101
           T+ E   R  ++A++L ++G+  G  V+++ PN P        V  +GA    ++  L A
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 102 HTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARQGVKTVGLAEVDVVNPETG 161
             L+ +L+ SE+K++  D      LLE L        L              D +     
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGAS 120

Query: 162 ESVKRDGVS 170
                  V 
Sbjct: 121 AEPPAPPVD 129

Length = 412

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 77.6 bits (192), Expect = 8e-16
 Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 14/157 (8%)

Query: 167 DGVSLGEVVLRGGCVTVGYFKDKEAT--RRCISDNG--WFYTGDIGVMHADGYVEIKDRS 222
           D V  GE+ + G  V +GY+ D E T  R      G   + TGD+G    DG +E   R 
Sbjct: 323 DWVP-GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGR- 380

Query: 223 KD--VIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKK 280
            D  V I G   +   E+E+ L     V  A VV   D     +  AFV  +        
Sbjct: 381 ADHQVKIRG-YRVELGEIEAALARHPGVQRAVVVVVGDGGAKAL-AAFVVAEDGAA---- 434

Query: 281 PTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI 317
                +       LP YMVP + V  + LP T+ GK+
Sbjct: 435 VDAAVLRAALAELLPAYMVPSRFVVLDALPLTANGKV 471

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 76.8 bits (190), Expect = 1e-15
 Identities = 40/120 (33%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 10  ANSTPLT--TLG-FLERAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQR 64
               PL   T+G  L+R AA Y D  +LVY      +T+ E +     +A  L ++GI++
Sbjct: 8   PTDVPLLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEK 67

Query: 65  GHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESK-LVFVDHLHT 123
           G  V + APNVP     QF     GAIL  IN       L   L  S  K L+  D    
Sbjct: 68  GDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKD 127

Length = 559

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 77.4 bits (190), Expect = 1e-15
 Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 158 PETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVE 217
           P  G S      S G + ++     +GY+ + E T   + D GW  TGD+     DG+  
Sbjct: 366 PGAGPSA-----SFGTLWIKSPANMLGYWNNPERTAEVLID-GWVNTGDLLERREDGFFY 419

Query: 218 IKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLEL 277
           IK RS ++II GG NI   EV+ +   ++ V EAA    PD  +G +    V    +L+ 
Sbjct: 420 IKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDE 479

Query: 278 TKKPTEKEIIEYCRARLPRYMV-PRKVVFSEELPKTSTGKIQKYLL 322
           +     K  I     R    M  P  +V   ++P+T +GK+ +  L
Sbjct: 480 SAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASL 525

Length = 540

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 5/91 (5%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRC--ISDNG--WFYTGDIGVMHADGYVEIKDRSKDVI- 226
           GE+V+ G  VT+GYFK++E T     + + G  WFYTGDIG  H DG +EI DR KD++ 
Sbjct: 503 GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVK 562

Query: 227 ISGGENICSAEVESVLYSITAVNEAAVVARP 257
           +  GE +   +VE+ L     V+   V A P
Sbjct: 563 LQHGEYVSLGKVEAALSVSPYVDNIMVHADP 593

Length = 696

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 47/159 (29%), Positives = 63/159 (39%), Gaps = 12/159 (7%)

Query: 172 GEVVLRGGCVTVGYFKDKEAT--------RRCISDNGWFYTGDIGVMHADGYVEIKDRSK 223
           GE+ + G  V  GY    E T                 + TGD+    ADG +E   R  
Sbjct: 295 GELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRID 354

Query: 224 DVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTE 283
           D +   G  I   E+E+ L SI  V EA VVA  D        A++              
Sbjct: 355 DQVKVRGFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVADPGAA----IDI 410

Query: 284 KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
           +++      RLP YMVP + V  + LP T  GKI +  L
Sbjct: 411 EDLRARLATRLPAYMVPSRFVRLDALPLTPNGKIDRKAL 449

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
           +T D+G     G +    R  DVI   G N+   EVE V+  +  V EA V    D   G
Sbjct: 294 FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAG 353

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
           E   A V    +++        ++ E+C   L  Y VP ++    E+PK + GK+ + LL
Sbjct: 354 ERVKAKVISHEEIDPV------QLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLL 407

Length = 414

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 75.3 bits (186), Expect = 5e-15
 Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 6/105 (5%)

Query: 20  FLERAAAAYTDCPSLVY-----NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPN 74
            LE AA  + D   +V      +   YT+++ +RR  ++A++L S+G++ G  V+ +A N
Sbjct: 1   ILEHAARYFGD-REIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWN 59

Query: 75  VPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119
                EL F VP  GA+L+ +N RL    ++ ++ H+E K++FVD
Sbjct: 60  THRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVD 104

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.8 bits (185), Expect = 7e-15
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 10  ANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVS 69
               PLT    L   A  + D  ++ ++    T++E   R  ++A++L ++G+++G  V+
Sbjct: 1   MQDYPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVA 60

Query: 70  VVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA 129
           V   N     E  F VP  GA+L+ IN RL    ++ +L  +E ++V VD          
Sbjct: 61  VFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDS--------- 111

Query: 130 LSLFPQRARLKAR-QGVKTV 148
               P  A +  +   V+TV
Sbjct: 112 -EFVPLLAAILPQLPTVRTV 130

Length = 521

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 74.5 bits (184), Expect = 8e-15
 Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 172 GEVVLRGGCVTVGYFKDKEAT-RRCISD----NG--WFYTGDIGVMHADGYVEIKDRSKD 224
           GE+ + G  V  GY    E T  R + D     G   + TGD+     DG +E   R+ D
Sbjct: 285 GELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADD 344

Query: 225 VIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEK 284
            +   G  I   E+E+ L +   V +A VV R +    +   A+V  K        P  +
Sbjct: 345 QVKIRGFRIELGEIEAALRAHPGVADAVVVVREEGPGDQRLVAYVVPKAGAA----PDAE 400

Query: 285 EIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI 317
            +    RA LP YMVP   V  +ELP T  GK+
Sbjct: 401 ALRAALRATLPAYMVPAAFVQLDELPLTPNGKV 433

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 10/134 (7%)

Query: 164 VKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSK 223
              D   +GE+ + G  V +GY   +E T   I ++GW ++GD+G +  DG++ I  R K
Sbjct: 383 HNPDADGIGEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIK 442

Query: 224 DVII-SGGENICSAEVE-SVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLEL-TKK 280
           ++II +GGEN+    +E +V   +  ++ A +V     F        ++LK +++  T +
Sbjct: 443 ELIITAGGENVPPVPIEEAVKKELPIISNAMLVGDKRKFL----SMLLTLKCEVDPETGE 498

Query: 281 PTEK---EIIEYCR 291
           P +    E IE+CR
Sbjct: 499 PLDNLTEEAIEFCR 512

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 74.1 bits (182), Expect = 1e-14
 Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVI-ISGG 230
           GE+ +RG C+  GY+K+ E T   + D GWF+TGDIG +  +G ++I DR K++I +S G
Sbjct: 466 GEICVRGKCLFSGYYKNPELTEEVMKD-GWFHTGDIGEILPNGVLKIIDRKKNLIKLSQG 524

Query: 231 ENICSAEVESVLYSITAVNE 250
           E +    +E+V Y    + E
Sbjct: 525 EYVALEYLENV-YGQNPIVE 543

Length = 660

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 12/148 (8%)

Query: 184 GYFKDKEATRRCISD-----NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEV 238
           GY  D+   ++ + D     + +F TGD+      GY    DR  D     GEN+ + EV
Sbjct: 297 GYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEV 356

Query: 239 ESVLYSITAVNEAAV--VARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPR 296
           E VL     V EA V  V  P    G    A ++L            +    +   +LP 
Sbjct: 357 EEVLAKHPGVEEANVYGVEVPGTE-GRAGMAALTLAPGAAFDP----QAFAAHLDEQLPA 411

Query: 297 YMVPRKVVFSEELPKTSTGKIQKYLLRE 324
           Y  P  +     +  T T K QK  LR+
Sbjct: 412 YARPLFLRVQAAMETTGTFKYQKTDLRK 439

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 59/191 (30%), Positives = 87/191 (45%), Gaps = 31/191 (16%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211
           E+++ N E G  +    V  G + +RG  +  GYF+D+E+     +D GW  TGD+G + 
Sbjct: 395 EIEIRN-EAGMPLPERVV--GHICVRGPSLMSGYFRDEESQDVLAAD-GWLDTGDLGYL- 449

Query: 212 ADGYVEIKDRSKDVIISGGENIC------SAEVESVLYSITAVNEAAVVARPDMFWGEIP 265
            DGY+ I  R+KD+II  G NI        AE E  L S  A   A  +A+ +   GE  
Sbjct: 450 LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAA--AFSIAQEN---GEKI 504

Query: 266 CAFVSLKRDLELTKKPTEKEIIEYCRARLPRYM--VPRKV--VFSEELPKTSTGKI---- 317
              V  +           +  + +  A L R    V   V  V    LP+TS+GK+    
Sbjct: 505 VLLVQCR-----ISDEERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKLSRAK 559

Query: 318 --QKYLLREFA 326
             ++YL   FA
Sbjct: 560 AKKRYLSGAFA 570

Length = 579

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 22/190 (11%)

Query: 156 VNPETGESVKRDGVSL---------GEVVLRGGCVTV----GYFKDKEAT-RRCISD--- 198
           ++PET   ++               GE++ R          GY K+++AT  + + D   
Sbjct: 275 MDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFR 334

Query: 199 --NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAV--V 254
             + W+ TGD+    ADG     DR  D      EN+ + EV  VL +I +V EA V  V
Sbjct: 335 KGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGV 394

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
             P  + G   CA ++L+    +  + T+  + +  R RLP Y VP  +  +EE+  T  
Sbjct: 395 KVPG-YDGRAGCAAITLEESSAVETEFTKNLLAKLARKRLPSYAVPLFLRLTEEVATTGN 453

Query: 315 GKIQKYLLRE 324
            K QK +LR+
Sbjct: 454 HKQQKGVLRK 463

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 27/171 (15%)

Query: 159 ETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEI 218
               +    G  +GE+ +RG  +  GY          I  + WF TGD+G +   G V +
Sbjct: 360 PGDGAAGVAGREIGEIEIRGASMMSGYLGQAP-----IDPDDWFPTGDLGYLVDGGLV-V 413

Query: 219 KDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA--------RPDMFWGEIPCAFVS 270
             R+K++I   G NI   E+E V   +  V E AVVA        RP +    I   F  
Sbjct: 414 CGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLV---IAAEFRG 470

Query: 271 LKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSE--ELPKTSTGKIQK 319
              D    +    + +   C       +VP  VVF     LP+TS+GK+++
Sbjct: 471 --PDEAGARSEVVQRVASECG------VVPSDVVFVAPGSLPRTSSGKLRR 513

Length = 525

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 69.1 bits (170), Expect = 5e-13
 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           GE+ LRG  + +GY++  +      +D GWF T D G    +G + I  R  ++  SGGE
Sbjct: 305 GEIWLRGASLALGYWRQGQLVPLV-NDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGE 362

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
            I   E+E V+     V +  VV   D  +G+ P A V      E   +     + E+ +
Sbjct: 363 GIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVV------ESDSEAAVVNLAEWLQ 416

Query: 292 ARLPRYMVP 300
            +L R+  P
Sbjct: 417 DKLARFQQP 425

Length = 458

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 1/127 (0%)

Query: 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM 259
           G++++GD      DGY  +  R  DVI   G  I +AEVES L S     EAAVV     
Sbjct: 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHE 572

Query: 260 FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQK 319
             G+   AFV+L   +  +++   K +I   R ++  +  P K+ ++  LPKT +GKI +
Sbjct: 573 VKGQGIYAFVTLVEGVPYSEE-LRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMR 631

Query: 320 YLLREFA 326
            +LR+ A
Sbjct: 632 RILRKIA 638

Length = 666

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 16/203 (7%)

Query: 126 LLEALSLFPQRARLKARQGVKTVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCV 181
           LL AL       +   R+   T+G      EV VV+ E G+ +   GV  G + LRG  V
Sbjct: 341 LLAALRRAVPATKGNTRRLA-TLGPPLPGLEVRVVD-EDGQVLPPRGV--GVIELRGESV 396

Query: 182 TVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESV 241
           T GY    +        +GW  TGD+G +  +G V +  R KDVII  G NI   ++E  
Sbjct: 397 TPGYL-TMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERA 455

Query: 242 LYSITAVNEAAVVA-RPDMFWGEIPCAFV--SLKRDLELTKKPTEKEIIEYCRARLPRYM 298
              +  V     VA R D        A    S   +     +    ++     A +   +
Sbjct: 456 AARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVG--V 513

Query: 299 VPRKVVFSE--ELPKTSTGKIQK 319
            PR VV      +PKT +GK+++
Sbjct: 514 RPRNVVVLGPGSIPKTPSGKLRR 536

Length = 545

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 9/118 (7%)

Query: 7   PNSANSTPLTTLGFLERAAAAYTDCPSLVY--------NNTTYTWSETHRRCLQVASSLS 58
           P +A   P +T   L RAAA + D P+L +           T+T++E      + A+ L 
Sbjct: 17  PLAARDLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLH 76

Query: 59  SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLV 116
           S+G+  G VV+ + PN+P  +   +G   +G I N IN  L+   ++ LL+ + +K++
Sbjct: 77  SLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVL 133

Length = 632

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 58/185 (31%), Positives = 81/185 (43%), Gaps = 24/185 (12%)

Query: 153 VDVVNPETGESVKRDGVSLGEVVLRG----GCVTVGYFKDKEATRRCIS------DNGWF 202
           V ++N  TGE    +    G +V+ G    GC+   +  D     R +           +
Sbjct: 422 VKLLNEVTGEPCGPN--EKGVLVIEGPLPPGCMQTVWGDDD----RFVKTYWSLFGRQVY 475

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
            T D G+  ADGY  I  R+ DVI   G  + + E+E  + S  AV E AVV   D   G
Sbjct: 476 STFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKG 535

Query: 263 EIPCAFVSLKRDLELT----KKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQ 318
           ++  AFV  K    L     +   EKEI+    ++L     P +V F   LPKT +GK  
Sbjct: 536 QVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGK-- 593

Query: 319 KYLLR 323
             LLR
Sbjct: 594 --LLR 596

Length = 629

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 197 SDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVAR 256
           ++ GWF T D+G +  DG + +  R+ D I +GG  +    VE+ L +  AV + AV   
Sbjct: 231 AEPGWFRTDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGL 289

Query: 257 PDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGK 316
           PD   G+   A V      +    PT + +  +    L R   PR++   +ELP+   GK
Sbjct: 290 PDDRLGQRVVAAVV----GDGGPAPTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGK 345

Query: 317 I-QKYLLREFAKS 328
           + ++ L+R FA  
Sbjct: 346 VDRRALVRRFAGE 358

Length = 358

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVI-ISGG 230
           GE+++R   +  GY+KD E T    +++GW +TGD G +  DG+++I  R K++   S G
Sbjct: 343 GEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKG 402

Query: 231 ENICSAEVESVLYSITAVNEAAVVAR 256
           + +  A +E++L +   V +  VV  
Sbjct: 403 KYVAPAPIENLLSANPHVEQVCVVGS 428

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 32/90 (35%), Positives = 51/90 (56%)

Query: 30  DCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG 89
           D  +LVY +   +++E H+R LQ A  L + GI +G VV+++  N  +  EL F     G
Sbjct: 17  DRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLG 76

Query: 90  AILNNINTRLDAHTLSVLLQHSESKLVFVD 119
           A+   IN RL A  ++ +L  + +KL+ VD
Sbjct: 77  AVFLPINYRLAADEVAYILGDAGAKLLLVD 106

Length = 497

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 8/184 (4%)

Query: 153 VDVVNPETGE--SVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS--DNGWFYTGDIG 208
           + V++  TG        GV      L  GC++  +  D    +   S      + + D G
Sbjct: 421 LRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWG 480

Query: 209 VMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAF 268
           +   DGY  I  R+ DVI   G  + + E+E  + S  +V E AVV   D   G++   F
Sbjct: 481 IRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVF 540

Query: 269 VSLKRDLELTKK----PTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
             LK              E  +++    +L     P +V F   LPKT +GK+ +  ++ 
Sbjct: 541 AILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQA 600

Query: 325 FAKS 328
            A+ 
Sbjct: 601 LAEG 604

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 63.5 bits (154), Expect = 3e-11
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 199 NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPD 258
           +G   TGD+G +   G + I  R  D+IISGGEN+    VE+ L +  AV + AV+  PD
Sbjct: 395 DGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPD 454

Query: 259 MFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI 317
             +G    AFV L     +       ++ +Y + R+ R+  PR +     +P+  TGK+
Sbjct: 455 ERFGHRLAAFVVLHPGSGVDA----AQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKV 509

Length = 516

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 62.9 bits (154), Expect = 6e-11
 Identities = 21/81 (25%), Positives = 42/81 (51%)

Query: 39  TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTR 98
            T TW+E   R  ++A+ L ++G++ G  V+++A N P        +  +GA+   I   
Sbjct: 4   QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63

Query: 99  LDAHTLSVLLQHSESKLVFVD 119
                ++ +L  S +++VFV+
Sbjct: 64  SSPEEVAYILNDSGARVVFVE 84

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 27/101 (26%), Positives = 52/101 (51%)

Query: 19  GFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM 78
             L R+A  Y D  +LV+ + ++T++E      +VA++L  +G+++G  V+ +  N  + 
Sbjct: 15  DILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAY 74

Query: 79  YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119
             L      +GA+   +N  L    L+ +L HS ++   VD
Sbjct: 75  ALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVD 115

Length = 523

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 14/168 (8%)

Query: 7   PNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGH 66
           P+S  S         E AAA + D P+L++ + + +++E + R  + A   ++ G+ +G 
Sbjct: 33  PDSKRSLGDV----FEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGD 88

Query: 67  VVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDH--LHTY 124
           VV+++  N P       G+   GA++  +NT+     L+  L   ++K + V    +  +
Sbjct: 89  VVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAF 148

Query: 125 ------LLLEALSLFPQRARLKARQGVKTVG--LAEVDVVNPETGESV 164
                 L             L   +G + +    A     NP +   V
Sbjct: 149 EEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASRSGV 196

Length = 600

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 24/194 (12%)

Query: 141 ARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC-ISDN 199
           A+     + + E     P+  +         GE+V+ G  V+ GY  + E T     + +
Sbjct: 323 AKPDSPLLIIDEEGTKLPDGEQ---------GEIVISGPSVSKGYLNNPEKTAEAFFTFD 373

Query: 200 G-WFY-TGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA-- 255
           G   Y TGD G +  DG +  + R    I   G  I   E+E  L   + V  A VV   
Sbjct: 374 GQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYN 432

Query: 256 ---RPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKT 312
              +       +       +R+ ELTK      I +  + RL  YM+PRK ++ + LP T
Sbjct: 433 KDHKVQYLIAYVVPKEEDFEREFELTK-----AIKKELKERLMEYMIPRKFIYRDSLPLT 487

Query: 313 STGKI-QKYLLREF 325
             GKI +K L+ E 
Sbjct: 488 PNGKIDRKALIEEV 501

Length = 503

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVI-ISGG 230
           GE+ +RG  +  GY+KD+  TR  I ++GW +TGDIG+    G ++I DR K++  ++ G
Sbjct: 459 GEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 518

Query: 231 ENICSAEVESV 241
           E I   ++E+V
Sbjct: 519 EYIAPEKIENV 529

Length = 651

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 7/151 (4%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCI--SDNGWFY-TGDIGVMHADGYVEIKDRSKDVIIS 228
           GE+V+ G  V+ GY  + E T       +    Y TGD G +  DG +  + R    I  
Sbjct: 343 GEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTI-TDGQLFYQGRLDFQIKL 401

Query: 229 GGENICSAEVESVLYSITAVNEAAVVAR--PDMFWGEIPCAFVSLKRDLELTKKPTEKEI 286
            G  I   ++E  L   + +  A VV +   D     +  A V    D E   + T K I
Sbjct: 402 HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLT-KAI 460

Query: 287 IEYCRARLPRYMVPRKVVFSEELPKTSTGKI 317
            +  +  LP YM+PRK ++ ++LP T+ GKI
Sbjct: 461 KKELKKSLPAYMIPRKFIYRDQLPLTANGKI 491

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 60.2 bits (146), Expect = 5e-10
 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query: 19  GFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM 78
             L R A  Y D P LV+  T +T++E  R     A +L++ G++RG  V+++  N    
Sbjct: 25  AMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEF 84

Query: 79  YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLV-----FVDHLHTYLL----LEA 129
            ++  G    GAI   INT L    L  +L++S ++L+      +  L         L A
Sbjct: 85  LDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPA 144

Query: 130 LSLFPQRARLKARQGVKTVGL----AEVDVVNPETGESV 164
           + L    A +    G  T  L    A       + G++ 
Sbjct: 145 VWLLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQPGDTA 183

Length = 542

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 40/195 (20%)

Query: 156 VNPETGESVK-RDGVSL----GEVVLRGGCVTV--------GYFKDKEATRRCISD---- 198
           V+ +TGE ++  DG+ +    GE  L  G +          GY  +    ++   D    
Sbjct: 287 VDEDTGELIRDSDGLCIPCQPGEPGLLVGKIIQNDPLRRFDGYVNEGATNKKIARDVFKK 346

Query: 199 -NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARP 257
            +  F +GD+ VM   GY+  KDR+ D     GEN+ + EVE +L ++  + +  V    
Sbjct: 347 GDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTEVEGILSNVLGLEDVVV---- 402

Query: 258 DMFWG-EIP--------CAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEE 308
              +G E+P         A V  +R ++L +              LP Y  P+ +    E
Sbjct: 403 ---YGVEVPGVEGRAGMAAIVDPERKVDLDR------FSAVLAKSLPPYARPQFIRLLPE 453

Query: 309 LPKTSTGKIQKYLLR 323
           + KT T K+QK  L+
Sbjct: 454 VDKTGTFKLQKTDLQ 468

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 14/160 (8%)

Query: 172  GEVVLRGGCVTVGYFK-DKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGG 230
            G + +RG  V +GY + +        +D GW+ TGDI  +  +G++ IK R+K      G
Sbjct: 982  GRLFVRGPNVMLGYLRAENPGVLEPPAD-GWYDTGDIVTIDEEGFITIKGRAKRFAKIAG 1040

Query: 231  ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKP--TEKEIIE 288
            E I  A VE +   +      A V+ PD   GE         R + LT     T    + 
Sbjct: 1041 EMISLAAVEELAAELWPDALHAAVSIPDARKGE---------RIILLTTASDATRAAFLA 1091

Query: 289  YCRAR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAK 327
            + +A      MVP +++  +E+P   TGKI    + + A+
Sbjct: 1092 HAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAE 1131

Length = 1140

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 59.4 bits (144), Expect = 8e-10
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 2/101 (1%)

Query: 19  GFLERAAAAYTDCPSLVYNNTT--YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVP 76
              +   A + D  +LV  +    YTW +      ++A  L ++G+Q G  V + APN  
Sbjct: 22  DAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCA 81

Query: 77  SMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF 117
                QF     GAIL NIN    A  L   L  S  + V 
Sbjct: 82  EWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVI 122

Length = 558

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 25/80 (31%), Positives = 44/80 (55%)

Query: 40  TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRL 99
            YT++E   R  ++A+ L ++G++ G  V+++  N P      F +   GA+   INT L
Sbjct: 3   RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62

Query: 100 DAHTLSVLLQHSESKLVFVD 119
               L+ +L HS ++L+ VD
Sbjct: 63  RGEELAHILDHSGARLIVVD 82

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 158 PETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVE 217
           PE G     D V  GE+ LRG  +  GY K ++ T   + D GWF+TGDIG    +G ++
Sbjct: 453 PEMGYDALSD-VPRGEICLRGNTLFSGYHKRQDLTEEVLID-GWFHTGDIGEWQPNGAMK 510

Query: 218 IKDRSKDVI-ISGGENICSAEVESV 241
           I DR K++  +S GE +    +E+ 
Sbjct: 511 IIDRKKNIFKLSQGEYVAVENLENT 535

Length = 660

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 57.7 bits (139), Expect = 4e-09
 Identities = 52/158 (32%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 172  GEVVLRGGCVTVGYFKDKEAT-RRCISD-----NGWFY-TGDIGVMHADGYVEIKDRSKD 224
            GE+ L G  +  GY      T  R + D         Y TGD+    ADG VE   R   
Sbjct: 2346 GELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDH 2405

Query: 225  VIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEK 284
             +   G  I   E+E+ L +  AV EA VVA+ D   G+   A+V +  D     +    
Sbjct: 2406 QVKIRGFRIELGEIEARLQAHPAVREAVVVAQ-DGASGKQLVAYV-VPDDA---AEDLLA 2460

Query: 285  EIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
            E+  +  ARLP YMVP   V  E LP    GK+ +  L
Sbjct: 2461 ELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKAL 2498

Length = 5163

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 34/106 (32%), Positives = 61/106 (57%), Gaps = 6/106 (5%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVI-ISGG 230
           GE++++   +  GYF +KE T+   +++G+F TGDI  ++ +G +   DRSK ++ +S G
Sbjct: 542 GELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQG 601

Query: 231 ENICSAEVESVLYS-ITAVNEAAVVARPDMFWGEIPCAFVSLKRDL 275
           E I   ++ + LYS I+ +N   V     M   + P A +S+ + L
Sbjct: 602 EYI-ETDMLNNLYSQISFINFCVVYGDDSM---DGPLAIISVDKYL 643

Length = 746

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 56.1 bits (136), Expect = 8e-09
 Identities = 31/108 (28%), Positives = 59/108 (54%)

Query: 11  NSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSV 70
           ++  +T    L RAA  + D  + V+ +   T++E + R  + A++L+++GI +G  V++
Sbjct: 1   DNEWMTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAI 60

Query: 71  VAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118
            APN P       G   +GA++  +NTR  A   + +L   ++K +FV
Sbjct: 61  WAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFV 108

Length = 513

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)

Query: 20  FLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY 79
            LERAA  + D P+L +     T++E      + A+ L  +G+++G  V+++ PN P   
Sbjct: 4   LLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCP--- 60

Query: 80  ELQFGVPM-----SGAILNNINTRLDAHTLSVLLQHSESKLVFVDH 120
             QF +       +GA++  +N       L   L  S +K++ V  
Sbjct: 61  --QFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAI 104

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 23/52 (44%), Positives = 36/52 (69%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSK 223
           GE++LRG  +  GY+K +E TR  + ++GWF+TGD+G + A+G + I  R K
Sbjct: 508 GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVK 559

Length = 700

>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009)

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 297 YMVPRKVVFSEELPKTSTGKIQKYLLREFA 326
           Y VPR+V F +ELPKT +GKI + LLR  A
Sbjct: 1   YAVPREVEFVDELPKTRSGKILRRLLRAIA 30

This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 22/83 (26%), Positives = 45/83 (54%)

Query: 37  NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN 96
             T  T+++  ++ L++A  L  +G+++G VV++++PN      +  G   +G I++  N
Sbjct: 7   TGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAAN 66

Query: 97  TRLDAHTLSVLLQHSESKLVFVD 119
                  L+  L+ S+ KL+F D
Sbjct: 67  PSYTPDELAHQLKISKPKLIFCD 89

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 26/79 (32%), Positives = 45/79 (56%)

Query: 41  YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLD 100
           YT+ +  RR  Q+A +L+++G++ G  V  +A N     E  +GV  SGA+ + IN RL 
Sbjct: 40  YTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLF 99

Query: 101 AHTLSVLLQHSESKLVFVD 119
              ++ ++ H+E + V  D
Sbjct: 100 PEQIAYIVNHAEDRYVLFD 118

Length = 539

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 14/169 (8%)

Query: 172  GEVVLRGGCVTVGYFKDKEAT-RRCISD-----NGWFY-TGDIGVMHADGYVEIKDRSKD 224
            GE+ L G  V  GY +    T  R + D      G  Y TGD+    ADG ++   R   
Sbjct: 4894 GELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDH 4953

Query: 225  VIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEK 284
             +   G  I   E+E+ L    AV EA V+A+     G+    +V + +D  L      +
Sbjct: 4954 QVKIRGFRIELGEIEARLREHPAVREAVVIAQEGAV-GKQLVGYV-VPQDPALADADEAQ 5011

Query: 285  -----EIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328
                 E+    R RLP YMVP  +VF   +P T  GK+ +  L +   S
Sbjct: 5012 AELRDELKAALRERLPEYMVPAHLVFLARMPLTPNGKLDRKALPQPDAS 5060

Length = 5163

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           G++ +RG  +  GY+   ++    +++ GW  T D   + +DG+V  + R+ D  + GG 
Sbjct: 340 GDLWVRGPAIAKGYWNRPDSP---VANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGV 396

Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
           N+   EVE ++    AV EAAVVA  +        AF+ +            +++     
Sbjct: 397 NVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFL-VATSGATIDGSVMRDLHRGLL 455

Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
            RL  + VP +    + LP+T  GK+ +  LR
Sbjct: 456 NRLSAFKVPHRFAVVDRLPRTPNGKLVRGALR 487

Length = 705

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 52/187 (27%), Positives = 76/187 (40%), Gaps = 29/187 (15%)

Query: 159 ETGESVKRDG------VSLGEVVLRGGCVT-----VGYFKDKEATRRCI------SDNGW 201
           E  E V RD       V  GE  L    +T     +GY   +E T + +        + +
Sbjct: 327 EKDEPV-RDAQGFCIPVGKGEPGLLISKITSQSPFLGYAGPRELTEKKLLRDVFKKGDVY 385

Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAV--VARPDM 259
           F TGD+ V     ++   DR+ D     GEN+ + EV  +L  +  + E  V  V  P  
Sbjct: 386 FNTGDLLVQDRQNFLYFHDRTGDTFRWKGENVATTEVADILTMVDFIQEVNVYGVTVPG- 444

Query: 260 FWGEIPCAFVSLK--RDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI 317
             G    A V LK   + +L K      + ++ R  LP Y  PR +   + +  T T K 
Sbjct: 445 HEGRAGMAAVILKPGTEFDLEK------LYQHVREFLPAYARPRFLRIQDSMEVTGTFKQ 498

Query: 318 QKYLLRE 324
           QK  L E
Sbjct: 499 QKVRLVE 505

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 54.3 bits (130), Expect = 4e-08
 Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVI-ISGG 230
           GE+ +RG  +  GY+K ++ T+  + D GW +TGD+G    +G ++I DR K++  +S G
Sbjct: 469 GEICIRGKTLFSGYYKREDLTKEVLID-GWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQG 527

Query: 231 ENICSAEVESVLYSITAVNEAAV 253
           E +    +E++   + AV+   V
Sbjct: 528 EYVAVENIENIYGEVQAVDSVWV 550

Length = 666

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 28/99 (28%), Positives = 42/99 (42%)

Query: 21  LERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYE 80
           L R A    D P+L +   T TW E   R   +A +LS  G+  G  V ++  N     E
Sbjct: 23  LARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVE 82

Query: 81  LQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119
                 M GAI   +N RL    ++ L+    + +V  +
Sbjct: 83  SVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTE 121

Length = 542

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 2/110 (1%)

Query: 14  PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAP 73
            LT +  L   AA Y D  +++      +++E  +R  ++A+ L  +GI+ G  V V  P
Sbjct: 29  TLTDI--LTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLP 86

Query: 74  NVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT 123
           NV   Y   F +   G           A  L       E+ L+ V   H+
Sbjct: 87  NVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHS 136

Length = 542

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 14  PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAP 73
           PLT +  L   AA Y D  +++  N  +++ E  +R   +A+ L+ +GI++G    V  P
Sbjct: 24  PLTDI--LRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLP 81

Query: 74  NVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLL---QHSESKLVFVDHLHTYLLLEAL 130
           N+   Y + F +   G         L +H  S L       E  L  +D  H+    +  
Sbjct: 82  NIAEFYIVFFALLKLGVAPVLA---LFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDF 138

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 24/182 (13%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC-ISDNG--WFYTGDIG 208
            V +V+P++ E +  + V  GE+   G  +  GY+++ EA+ +  +  +G  W  TGD+G
Sbjct: 380 AVLIVDPQSLEVLGDNRV--GEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLG 437

Query: 209 VMHADGYVEIKDRSKDVIISGGENICSAEVESVLYS-ITAVNEAAVVARPDMFWGE--IP 265
            +  DG + +  R KD++I  G N+   ++E  +   +  V +  V A      GE  I 
Sbjct: 438 FLR-DGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQGEEGIG 496

Query: 266 CAFVSLKRDLELTKKPTE------KEIIEYCRARLPRYMVPRKVVFSE--ELPKTSTGKI 317
            A   + R ++    P        + + E C+        P  V+      LPKTS+GK+
Sbjct: 497 IA-AEISRSVQKILPPQALIKSIRQAVAEACQE------APSVVLLLNPGALPKTSSGKL 549

Query: 318 QK 319
           Q+
Sbjct: 550 QR 551

Length = 4334

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 22/88 (25%), Positives = 41/88 (46%)

Query: 30  DCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG 89
           D  +LV    + T+ E   R  ++A +L ++G+  G  V+V+AP       L   +  +G
Sbjct: 1   DRIALVDGGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAG 60

Query: 90  AILNNINTRLDAHTLSVLLQHSESKLVF 117
            +   +N    A  L+ +L  S+  L+ 
Sbjct: 61  GVAVPLNPSYPAAELAYILSDSQPSLLV 88

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 57/190 (30%), Positives = 79/190 (41%), Gaps = 32/190 (16%)

Query: 157 NPETGESVK-RDG----VSLGEVVLRGGCVT-----VGYFKDKEATRRCISDNG------ 200
           + +TGE V+  DG    V  GEV L  G +T      GY  D EA+ + I  +       
Sbjct: 381 DVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDA 439

Query: 201 WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAV--VARPD 258
           WF TGD+      G+ +  DR  D     GEN+ + EVE+ L     V EA V  V  P 
Sbjct: 440 WFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPG 499

Query: 259 MFWGEIPCAFVSLK----RDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
               +      ++      + +L        +  +   RLP Y VP  V    EL  T T
Sbjct: 500 T---DGRAGMAAIVLADGAEFDL------AALAAHLYERLPAYAVPLFVRLVPELETTGT 550

Query: 315 GKIQKYLLRE 324
            K +K  LR+
Sbjct: 551 FKYRKVDLRK 560

Length = 600

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 14/158 (8%)

Query: 171  LGEVVLRGGCVTVGYFKDKEATRRCISDNGW------FYTGDIGVMHADGYVEIKDRSKD 224
            LGE+ L G  +  GY      T      + +      + TGD+    ADG +E   R   
Sbjct: 3389 LGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDH 3448

Query: 225  VIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEK 284
             +   G  I   E+E+ L     V EA V+A      G    A+V    + E       +
Sbjct: 3449 QVKIRGFRIELGEIEARLLEHPWVREAVVLAVD----GRQLVAYVVP--EDEAGDLR--E 3500

Query: 285  EIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
             +  + +A LP YMVP  ++F E +P T  GK+ +  L
Sbjct: 3501 ALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKAL 3538

Length = 5163

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 12/90 (13%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISG-G 230
           GE+++RG  + +GY  +  AT      + W+ TGD+G +  +GY+ I  R K++II+  G
Sbjct: 305 GEILVRGS-LMLGYLGEPPAT------DDWWATGDLGHLDEEGYLYINGRKKNLIITSFG 357

Query: 231 ENICSAE-VESVLYSITAVNEAAVV--ARP 257
            N+ S E VES L    A+ +A V   A+P
Sbjct: 358 RNV-SPEWVESELQQAPAIAQAVVFGDAQP 386

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 196 ISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA 255
             + GW+ TGDI      G+V+I+ R+K      GE +    VE +   ++   + A   
Sbjct: 587 EMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAI 646

Query: 256 RPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR-LPRYMVPRKVVFSEELPKTST 314
           + D   GE   A V    D ELT+    +++ +Y R   +P   VPR + + ++LP   +
Sbjct: 647 KSDASKGE---ALVLFTTDSELTR----EKLQQYAREHGVPELAVPRDIRYLKQLPLLGS 699

Query: 315 GKIQKYLLREFA 326
           GK     L+   
Sbjct: 700 GKPDFVTLKSMV 711

Length = 718

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 18/79 (22%), Positives = 38/79 (48%)

Query: 40  TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRL 99
             T+ E      ++A++L+ +G++ G VV+   PN      +       GA++N I    
Sbjct: 1   RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60

Query: 100 DAHTLSVLLQHSESKLVFV 118
               L  +L+ + ++++FV
Sbjct: 61  RERELGFILRQARARVLFV 79

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 39  TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTR 98
           TTY  ++ H R L+V+ +L   GI+ G  V+ +A N     E  +G+   GAI + +N R
Sbjct: 40  TTY--AQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPR 97

Query: 99  LDAHTLSVLLQHSESKLVFVD 119
           L    ++ ++ H+E ++V  D
Sbjct: 98  LFPEQIAWIINHAEDRVVITD 118

Length = 542

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 19/80 (23%), Positives = 40/80 (50%)

Query: 40  TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRL 99
             +++E +    + A +L ++G+++G VV+++  N P        +   GA+   INT  
Sbjct: 3   RLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQ 62

Query: 100 DAHTLSVLLQHSESKLVFVD 119
               L+  +  S+++ V VD
Sbjct: 63  RGEVLAHCINVSDARAVIVD 82

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 13/159 (8%)

Query: 168  GVSLGEVVLRGGCVTVGYFKDKEAT-RRCISD-----NGWFY-TGDIGVMHADGYVEIKD 220
            GV  GE+ + G  +  GY +    T  R ++D      G  Y TGD+    ADG +E   
Sbjct: 3433 GV-AGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLG 3491

Query: 221  RSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKK 280
            R    +   G  I   E+E+ L    +V EA V+AR D   G+   A+V         ++
Sbjct: 3492 RIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLAR-DGAGGKQLVAYVVPADPQGDWRE 3550

Query: 281  PTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQK 319
                 + ++  A LP YMVP +++    +P    GK+ +
Sbjct: 3551 ----TLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDR 3585

Length = 3956

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query: 39  TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTR 98
            T T+ + +  C Q A +   +G++R H V ++  N P  +    G   +G I   I T 
Sbjct: 7   HTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTT 66

Query: 99  LDAHTLSVLLQHSESKLVFVD 119
                   + + SE+ ++ VD
Sbjct: 67  NSPEACQYVAETSEANILVVD 87

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 21/83 (25%), Positives = 46/83 (55%)

Query: 39  TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTR 98
             YTW++   +  ++A++L S+G++ G  +++++ N          + M+G +   +   
Sbjct: 5   HEYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPT 64

Query: 99  LDAHTLSVLLQHSESKLVFVDHL 121
           L A T+  +L+HS++K +FV  L
Sbjct: 65  LTAETIRYVLEHSDAKALFVGKL 87

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 2/123 (1%)

Query: 204  TGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGE 263
            TGD+    ADG +E   R    +   G  I   E+E+ L +   V EA V+A+P    G 
Sbjct: 894  TGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGDA-GL 952

Query: 264  IPCAFVSLKRDLELTKKP-TEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
               A++      +  +   T  E+    R  LP YMVP  ++  + LP T  GK+ +  L
Sbjct: 953  QLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNGKLDRKAL 1012

Query: 323  REF 325
             + 
Sbjct: 1013 PKP 1015

Length = 3956

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 12/139 (8%)

Query: 12  STPLTTLGF-LERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSV-GIQRGHVVS 69
           + P T+L   LE +A  Y D  ++V+     ++ E      ++A  L    G+++G  V 
Sbjct: 6   TLPETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVL 65

Query: 70  VVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA 129
           +   N P      + +  + A++  +N       L+  +  S +++  V           
Sbjct: 66  LYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIV----------G 115

Query: 130 LSLFPQRARLKARQGVKTV 148
             L P+ A       ++ V
Sbjct: 116 SELAPKVAPAVGNLRLRHV 134

Length = 546

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 12/159 (7%)

Query: 172  GEVVLRGGCVTVGYFKDKEAT-RRCISD-----NGWFY-TGDIGVMHADGYVEIKDRSKD 224
            GE+ L G  +  GY      T  R ++D         Y TGD+    ADG +E   R   
Sbjct: 1919 GELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDH 1978

Query: 225  VIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFV----SLKRDLELTKK 280
             +   G  I   E+E+ L     V EA V+A+ D   G+   A+V        D +  + 
Sbjct: 1979 QVKIRGFRIELGEIEARLREQGGVREAVVIAQ-DGANGKQLVAYVVPTDPGLVDDDEAQV 2037

Query: 281  PTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQK 319
                 +  + +A LP YMVP  +VF   +P T  GK+ +
Sbjct: 2038 ALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDR 2076

Length = 3956

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 10  ANSTPLTTLGFLERAAAAYTDCPSLVYNNT--TYTWSETHRRCLQVASSLSSVGIQRGHV 67
            N  PL    F ER +  ++D P L+   T   YT+++      +VA+ L  +GI++G V
Sbjct: 20  PNHLPLHDYCF-ERLSE-FSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDV 77

Query: 68  VSVVAPNVPSMYELQFGVPMSGAILNNIN 96
           V ++ PN P       G    GA+    N
Sbjct: 78  VMLLLPNCPEFVLAFLGASRRGAVTTTAN 106

Length = 537

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM 259
           G++ +GD+G    +GY  I  RS D I   G  +    +E+ +     V E   +   D 
Sbjct: 492 GYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDP 551

Query: 260 FWGEIPCAFVSLKRDLE---LTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGK 316
               +P   + LK+D     +     + EI       +    V RK++   +LPKT TGK
Sbjct: 552 DCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGK 611

Query: 317 IQKYLLREF 325
           I + ++ +F
Sbjct: 612 IPRQIISKF 620

Length = 647

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 22/88 (25%), Positives = 42/88 (47%)

Query: 32  PSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI 91
            ++ +     T+ E H   + VA  L+++G+++G  V+++  N   M  +   +   GA+
Sbjct: 19  TAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAV 78

Query: 92  LNNINTRLDAHTLSVLLQHSESKLVFVD 119
              +NTRL    L   L  +E K +  D
Sbjct: 79  AVLLNTRLSREELLWQLDDAEVKCLITD 106

Length = 483

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 204  TGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGE 263
            TGD+    ADG +E   R    +   G  I   E+E+ L     V EAAV+A      G+
Sbjct: 890  TGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GK 945

Query: 264  IPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
                +V L    E       + +  +  A LP YMVP + +  E LP T  GK+ +  L
Sbjct: 946  QLVGYVVL----ESEGGDWREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKAL 1000

Length = 5163

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 20  FLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY 79
           FL +AA  + D  +LV+ + ++TW E   R   +A++L++ G+++G  + V + N   M+
Sbjct: 12  FLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMF 71

Query: 80  ELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLV-----FVDHL 121
           E  F     GA+    N R     ++ L + S ++ +     F +H 
Sbjct: 72  ESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHA 118

Length = 528

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 15  LTTLGFLERAAAAYTDCPSLVYNNT--TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVA 72
           LT   F+ + A  Y D  + V   T    T+ E  R   + A +L S+G+++G VV VV 
Sbjct: 28  LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVL 87

Query: 73  PNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLH 122
           PNV     +  G+  +G + +  N       +    + + +KL+  +  +
Sbjct: 88  PNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTN 137

Length = 546

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 20/95 (21%), Positives = 41/95 (43%)

Query: 25  AAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFG 84
                D  +L Y++ + T+ E      +  ++L  +GI+R + V ++  + P      +G
Sbjct: 15  NEGRGDKIALYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWG 74

Query: 85  VPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119
               GA+   INT L        L  S ++++ + 
Sbjct: 75  AIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVIS 109

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 11  NSTPLTTLGFLERAAAAYTDCPSLV--YNNTTYTWSETHRRCLQVASSLSSVGIQRGHVV 68
               L +   L   A+ + D P+L+        T++E  R   ++A+ L++ G ++G VV
Sbjct: 3   KDLSLDSASLL--FASEFGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGRKGDVV 60

Query: 69  SVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE 128
            +++PN      +   V  +GA++   N       ++  ++ S +KL           L 
Sbjct: 61  LLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITT-SELAEKLA 119

Query: 129 ALSLFP 134
           +L+L P
Sbjct: 120 SLALEP 125

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 22  ERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYEL 81
           +  A  +             T+ +  R   ++A++L  +G  +G  V++  PN P     
Sbjct: 25  DDTAIIFDGED---GLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIA 81

Query: 82  QFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119
                  GAI   ++  L A  ++  +     K++  D
Sbjct: 82  LLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIAD 119

Length = 528

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 14  PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAP 73
            L  L  L   AA + D  ++V      T+ E      ++A+ L ++GI  G  V V  P
Sbjct: 16  TLGDL--LAANAARHPDRTAVVDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLP 73

Query: 74  NVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119
           NV     L F +   GAI         AH +    + SE+K   + 
Sbjct: 74  NVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIA 119

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 9/155 (5%)

Query: 7   PNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGH 66
             +  +  L +L  L+  A A  D  +L+  +   + +E      ++A+ L++ G++RG 
Sbjct: 4   DAAPRADTLASL--LDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGD 61

Query: 67  VVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV-DHLHTYL 125
            V+V  PN      L       GA +  +NTR  +H ++ +L    ++ + V        
Sbjct: 62  RVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGID 121

Query: 126 LLEALSLFPQRARLKARQGVKTVGLAEVDVVNPET 160
               L+  P  A    R       +A VD     T
Sbjct: 122 FAAILAAVPPDALPPLR------AIAVVDDAADAT 150

Length = 540

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 197  SDNGWFY-TGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA 255
            +D G  Y TGD+  + ADG VE   R    +   G  I   E+ES L    AV EA V+A
Sbjct: 2564 ADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVLA 2623

Query: 256  ----RPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPK 311
                      G +  A      + +   +   K    + + +LP YMVP  ++  + LP 
Sbjct: 2624 LDTPSGKQLAGYLVSAVAGQDDEAQAALREALKA---HLKQQLPDYMVPAHLILLDSLPL 2680

Query: 312  TSTGKIQKYLL 322
            T+ GK+ +  L
Sbjct: 2681 TANGKLDRRAL 2691

Length = 4334

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 172 GEVVLRGGCVTVGYFKDKEATRRCI-------SDNGWFY-TGDIGVMHADGYVEIKDRSK 223
           GE+ + G  V  GY    E T            D    Y TGD+     DG +E   R  
Sbjct: 320 GELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRID 379

Query: 224 DVIISGGENICSAEVESVLYSITAVNEAAV 253
           D +   G  I   E+E+ L     V EA V
Sbjct: 380 DQVKIRGYRIELGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 16  TTLGFLERAAAAYTDCPSLVYNN------TTYTWSETHRRCLQVASSLSSVGIQRGHVVS 69
           T    L+   A+  D  ++            +T+ E      +VA  L+ +G+ RG VVS
Sbjct: 25  TINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVS 84

Query: 70  VVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118
              PN      L       GA+LN +        LS +L+H+ESK++ V
Sbjct: 85  CQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVV 133

Length = 547

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 21/81 (25%), Positives = 41/81 (50%)

Query: 39  TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTR 98
              T+ E   R  ++A  L ++G++ G VV+++  N P  +E+ +    SG     IN  
Sbjct: 10  EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWH 69

Query: 99  LDAHTLSVLLQHSESKLVFVD 119
           L A  ++ ++  S +K++ V 
Sbjct: 70  LTAAEIAYIVDDSGAKVLIVS 90

Length = 502

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 24/78 (30%), Positives = 38/78 (48%)

Query: 41  YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLD 100
           +++ E   R  ++A  L+ +G+ RG VVS   PN      L       GA+LN +     
Sbjct: 54  FSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFR 113

Query: 101 AHTLSVLLQHSESKLVFV 118
              LS +L H++SK+  V
Sbjct: 114 ERELSFMLNHADSKVFVV 131

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 28/95 (29%), Positives = 46/95 (48%)

Query: 21  LERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYE 80
           LE AAA   D  +LV+++ T T++    R L +AS L  +G+ RG  V++          
Sbjct: 6   LEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVT 65

Query: 81  LQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKL 115
             FG  ++G +   IN  L A  ++ +L     +L
Sbjct: 66  AMFGAALAGGVFVPINPLLKAEQVAHILADCNVRL 100

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 153 VDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC-----------ISDNGW 201
           V +V+P+T        V  GE+ + G  V  GY++  E T R              +  W
Sbjct: 381 VRIVDPDTCIECPAGTV--GEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPW 438

Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAV 253
             TGD+G +  +G + I  R KD++I  G N    ++E+ +  IT    AA+
Sbjct: 439 LRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGRVAAI 489

Length = 578

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 14/157 (8%)

Query: 19  GFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM 78
              E  A A  D  +LV  +   T++E   R  ++A  L + G+  G  V + A N    
Sbjct: 7   DLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEY 66

Query: 79  YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRAR 138
            E   G   + A+  N+N R     L  LL  S++  +  +              P+ A 
Sbjct: 67  VEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYER----------EFAPRVAE 116

Query: 139 LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVV 175
           +  R       L  + VV   +G  +    V   + +
Sbjct: 117 VLPR----LPKLRTLVVVEDGSGNDLLPGAVDYEDAL 149

Length = 533

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 13/162 (8%)

Query: 170  SLGEVVLRGGCVTVGYFKDKEATRRCISDNGW-------FYTGDIGVMHADGYVEIKDRS 222
            ++GE+ + G  V  GY  D   T      + +       + TGD+    +DG +E   R 
Sbjct: 4065 AVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRI 4124

Query: 223  KDVIISGGENICSAEVESVLYSITAVNEAAV--VARPDMFWGEIPCAFVSLKRDLELTKK 280
               +   G  I   E+E+ L+    V EAAV      +   G+    ++ +     L + 
Sbjct: 4125 DHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEGVN---GKHLVGYL-VPHQTVLAQG 4180

Query: 281  PTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
               + I +  RA LP YMVP   ++ + LP  + GK+ +  L
Sbjct: 4181 ALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKAL 4222

Length = 4334

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 171 LGEVVLRGGCVTVGYFKDKEATRRC-ISDN--GWFYTGDIGVMHADGYVEIKDRSKDVII 227
           +GE+++ G  VT  Y+   EAT+   ISD    W   GD+G     G +    R    + 
Sbjct: 298 VGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVE 357

Query: 228 SGGENICSAEVESVLYSITAVNEAAVV 254
           + G  + +  VE V      V  +A+V
Sbjct: 358 TAGGTLFTVPVEQVFNRHPGVRRSALV 384

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 26/91 (28%), Positives = 43/91 (47%)

Query: 40  TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRL 99
             T+ E + R   +AS L S+GI  G  V++ A N P        +   GA+   I +  
Sbjct: 45  AITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTS 104

Query: 100 DAHTLSVLLQHSESKLVFVDHLHTYLLLEAL 130
               L+ +L  SESK++FV++     L+  +
Sbjct: 105 TPEQLAYILNESESKVIFVENQELLDLVLPV 135

Length = 613

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 18/73 (24%), Positives = 33/73 (45%)

Query: 42  TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 101
           T+ E   R  ++A  L + GI++G  V ++ P    +  L F +   GA+   I+  +  
Sbjct: 4   TFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGMGR 63

Query: 102 HTLSVLLQHSESK 114
             L   L+ +E  
Sbjct: 64  KHLGRCLEEAEPD 76

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 36  YNNTTYTWSETHRRCLQVASSL-SSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN 94
           +   T+T+SET+   L+ A  L     +Q G  V++   N      L   +   GA+   
Sbjct: 1   FEGKTWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAF 60

Query: 95  INTRLDAHTLSVLLQHSESKLVFVD 119
           IN  L    L   L+ S +K V VD
Sbjct: 61  INYNLSGDPLIHCLKISGAKFVIVD 85

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 21/96 (21%)

Query: 155 VVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCI-----------------S 197
           +V+P+TG  +  DG  +GE+ L G  +  GY+   E T R                   +
Sbjct: 415 IVDPDTGAEL-PDG-EVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAA 472

Query: 198 DNG-WFYTGDIGVMHADGYVEIKDRSKDVIISGGEN 232
           D+G W  TGD+GV + DG + I  R  D+I+  G N
Sbjct: 473 DDGTWLRTGDLGV-YLDGELYITGRIADLIVIDGRN 507

Length = 612

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 22/126 (17%)

Query: 204 TGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVAR-----PD 258
           TGD+     DG VE   RS D +   G+ I   E++  + ++  V +A   A        
Sbjct: 841 TGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAA 900

Query: 259 MFWGE-------IPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPK 311
                       +  + + L              +    R RLP +MVP  ++  ++LP 
Sbjct: 901 TGGDARQLVGYLVSQSGLPLDTSA----------LQAQLRERLPPHMVPVVLLQLDQLPL 950

Query: 312 TSTGKI 317
           ++ GK+
Sbjct: 951 SANGKL 956

Length = 1296

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 23/98 (23%), Positives = 48/98 (48%)

Query: 20  FLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY 79
           ++E+ A+ Y +  +L +     T+S  H +  + A+ L  +G+++G  V+++ PN P   
Sbjct: 29  YVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAV 88

Query: 80  ELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF 117
              +G  ++G I+   N       L   L  S +K++ 
Sbjct: 89  IGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVIL 126

Length = 563

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 2/117 (1%)

Query: 20  FLERAAAAYTDCPSLVYNNT--TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS 77
           +    A    D P+++  +T    T+ E   R  ++A    S+G++RG  V++   N   
Sbjct: 2   YPGIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLR 61

Query: 78  MYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP 134
             E+ +    SG     +N+ L     + ++  S ++ +        +    L   P
Sbjct: 62  YLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCP 118

Length = 511

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 21/103 (20%)

Query: 148 VGLAEVDV-VNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCI---------- 196
           VG++E  V V+PET   +  DG  +GE+ L G  +  GY+   E T              
Sbjct: 396 VGVSEWAVIVDPETASELP-DG-QIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSE 453

Query: 197 -------SDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGEN 232
                   D  W  TGD GV   DG + I  R KD++I  G N
Sbjct: 454 SHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRN 495

Length = 631

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 18/79 (22%), Positives = 38/79 (48%)

Query: 41  YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLD 100
           +T++E      + A+ L  +G+ RG  V+V+ P VP ++ +  G    GA+     T+L 
Sbjct: 1   WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 101 AHTLSVLLQHSESKLVFVD 119
              +   L+ + ++ +   
Sbjct: 61  PKDIRYRLERAGARAIVTS 79

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 14 PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAP 73
            T    L  A   Y D P+LV  +T  T+ +   R  +   +  ++G+  G  V++++ 
Sbjct: 11 GATYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSL 70

Query: 74 NVP 76
          N P
Sbjct: 71 NRP 73

Length = 524

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 167 DGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVI 226
            GV  GE+ + G  + +GY    + T         + TGD+    ADG +E   R    +
Sbjct: 564 LGVP-GELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQV 622

Query: 227 ISGGENICSAEVESVL 242
              G  I   E+E+ L
Sbjct: 623 KIRGFRIELGEIEAAL 638

Length = 642

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 14/176 (7%)

Query: 149 GLAEVDVVNPETGESVKRDGVSLGEVVLRGG--CVTVGYFKDKEATRRCIS-----DNGW 201
           G+A V+  + E G+ V  +   +GE+V       + + ++ D + +R   +        W
Sbjct: 419 GMA-VEAFDEE-GKPVIGE---VGELVCTKPFPSMPLYFWNDPDGSRYRDAYFDTFPGVW 473

Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
              GD   +   G V I  RS   +  GG  I +AE+  V+  I  V ++ VV +     
Sbjct: 474 -RHGDWIKITPHGGVIIYGRSDATLNPGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDDG 532

Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI 317
            E    FV L+  + L      K I    RA L    VP +++   ++P T +GK 
Sbjct: 533 DERMPLFVKLREGVTLDD-ALVKRIRSAIRAALSPRHVPAEIIAVPDIPYTLSGKK 587

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 8   NSANSTPLTTL-GFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGH 66
            +A   P TTL   + + AA   D P+L      +++ E   + + +A+ L   G++ G 
Sbjct: 450 ATAVEIPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGD 509

Query: 67  VVSVVAP 73
            V+V  P
Sbjct: 510 SVAVALP 516

Length = 1296

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 4/135 (2%)

Query: 2   EQLLLPNSANSTPLTT--LGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSS 59
           E+ +    A   PL        E  AA   D  +LV      T++E   R  ++A  L S
Sbjct: 212 EREVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLIS 271

Query: 60  VGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119
           +G+  G  V+++A     +      V  +GA    ++    A  L+ +L+ S   L+   
Sbjct: 272 LGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQ 331

Query: 120 H--LHTYLLLEALSL 132
                  + L  L+L
Sbjct: 332 AHLRVDDVGLPGLAL 346

Length = 642

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 25  AAAYTDCPSLVYNN-----TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY 79
           A  Y    +L++ +       Y++ E +    + A+   S+GI++G  V++   N P   
Sbjct: 17  ADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFI 76

Query: 80  ELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLV 116
              FG+   GAI+  IN RL     + +LQ+S++ L+
Sbjct: 77  FCWFGLAKIGAIMVPINARLLREESAWILQNSQASLL 113

Length = 517

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 204  TGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGE 263
            TGD    +ADG +E   R    +   G  +   E+++ L +   V +AAV+ R      +
Sbjct: 1509 TGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQ 1568

Query: 264  IPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
            +   +          ++     +     A LP YMVP +++  +++P   +GK+ +  L 
Sbjct: 1569 LVGYYTGEAGQEAEAER-----LKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALP 1623

Query: 324  E 324
            E
Sbjct: 1624 E 1624

Length = 4334

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 173 EVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISG 229
           EV ++G  VT GY KD E T     + G++  GD        +V+  D  K +I  G
Sbjct: 425 EVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAAR-----FVDPDDPEKGLIFDG 476

Length = 624

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 21/76 (27%), Positives = 38/76 (50%)

Query: 40  TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRL 99
           + T+ E  +R  Q+A  L+++G++RG  V+++A N      L   +   GA++  +N RL
Sbjct: 1   SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60

Query: 100 DAHTLSVLLQHSESKL 115
               L   L   +  L
Sbjct: 61  PQEELQQQLADLQPDL 76

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 42  TWSETHRRCLQVASSL-SSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLD 100
           T++    R   +A +L   +GI     V  +  N     E+ F V   GA+ N +N +L 
Sbjct: 40  TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99

Query: 101 AHTLSVLLQHSESKLVFVD 119
              +  ++ H+E +++  D
Sbjct: 100 NDQIVHIINHAEDEVIVAD 118

Length = 576

>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 213 DGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLK 272
           DG   I  R  +++  GG N+    V  +L     V  AAV  R D   G    AF+ + 
Sbjct: 288 DGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAV--RLD---GRRLKAFIVVA 342

Query: 273 RDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQ 318
            D +  +   E E+       LP    P +  F  ELP+T  GK+ 
Sbjct: 343 EDAD--EAELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386

This model represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. Length = 386

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 198 DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARP 257
              W + GD   +   G + I  RS   +   G  + SAE+ + +  +  V E+  + + 
Sbjct: 498 PGVWRH-GDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQE 556

Query: 258 DMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI 317
               G     FV L     L        I    RA L    VP +++    +P T TGK 
Sbjct: 557 QPDGGYRVVLFVHLAPGATLDDALL-DRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKR 615

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PLN02479	567	acetate-CoA ligase	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.97
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.96
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.95
PTZ00297	1452	pantothenate kinase; Provisional	99.93
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.93
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.92
PRK09188	365	serine/threonine protein kinase; Provisional	99.91
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.9
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.89
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.81
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.75
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.51
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.45
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	99.4
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	98.53
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	97.93
PLN03051	499	acyl-activating enzyme; Provisional	97.25
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	95.34
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	95.22
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	95.15
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	94.51
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	94.46
PRK06164	540	acyl-CoA synthetase; Validated	94.14
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	94.11
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	94.11
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	93.82
PRK04319	570	acetyl-CoA synthetase; Provisional	93.59
PRK08315	559	AMP-binding domain protein; Validated	93.59
PRK12583	558	acyl-CoA synthetase; Provisional	93.57
PLN02736	651	long-chain acyl-CoA synthetase	92.55
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	92.44
PRK07638	487	acyl-CoA synthetase; Validated	92.35
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	92.27
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	92.24
PLN02860	563	o-succinylbenzoate-CoA ligase	92.23
PRK05852	534	acyl-CoA synthetase; Validated	92.06
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	91.94
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	91.52
PLN03052	728	acetate--CoA ligase; Provisional	91.07
PRK08308	414	acyl-CoA synthetase; Validated	91.06
PLN02614	666	long-chain acyl-CoA synthetase	91.03
PRK06188	524	acyl-CoA synthetase; Validated	90.99
PLN02246	537	4-coumarate--CoA ligase	90.77
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	90.72
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	90.66
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	90.55
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	90.35
PRK08316	523	acyl-CoA synthetase; Validated	90.16
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	90.15
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	90.12
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	90.06
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	90.04
PRK07529	632	AMP-binding domain protein; Validated	89.94
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	89.92
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	89.66
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	89.62
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	89.52
PRK13388	540	acyl-CoA synthetase; Provisional	89.52
PRK07788	549	acyl-CoA synthetase; Validated	89.52
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	89.47
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	88.87
PLN02861	660	long-chain-fatty-acid-CoA ligase	88.59
PRK10946	536	entE enterobactin synthase subunit E; Provisional	88.41
PLN02654	666	acetate-CoA ligase	88.3
PRK06839	496	acyl-CoA synthetase; Validated	88.09
PRK07787	471	acyl-CoA synthetase; Validated	87.98
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	87.94
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	87.92
PTZ00342	746	acyl-CoA synthetase; Provisional	87.92
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	87.43
PRK13382	537	acyl-CoA synthetase; Provisional	87.24
PRK13383	516	acyl-CoA synthetase; Provisional	86.99
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	86.27
PLN02249	597	indole-3-acetic acid-amido synthetase	86.27
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	85.77
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	85.71
PTZ00297	1452	pantothenate kinase; Provisional	85.08
PRK07868	994	acyl-CoA synthetase; Validated	85.04
PRK07867	529	acyl-CoA synthetase; Validated	85.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	85.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	84.87
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	84.83
PRK06060	705	acyl-CoA synthetase; Validated	84.5
PRK07470	528	acyl-CoA synthetase; Validated	84.08
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	83.81
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	83.31
PRK00174	637	acetyl-CoA synthetase; Provisional	83.25
PLN02430	660	long-chain-fatty-acid-CoA ligase	82.94
PRK07798	533	acyl-CoA synthetase; Validated	82.66
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	81.97
PLN02574	560	4-coumarate--CoA ligase-like	81.96
PRK08180	614	feruloyl-CoA synthase; Reviewed	81.8
PRK06018	542	putative acyl-CoA synthetase; Provisional	81.15
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	80.81

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=9.7e-55  Score=400.86  Aligned_cols=311  Identities=47%  Similarity=0.750  Sum_probs=274.7

Q ss_pred             CCCCCCHHHHHHHHHHhcCCC-cEEEeCC---eeecHHHHHHHHHHHHHHHHHcC--CCCCCEEEEECCCCHHHHHHHHH
Q 048729           11 NSTPLTTLGFLERAAAAYTDC-PSLVYNN---TTYTWSETHRRCLQVASSLSSVG--IQRGHVVSVVAPNVPSMYELQFG   84 (330)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~p~~-~a~~~~~---~~~T~~el~~~~~~~a~~L~~~g--~~~gd~V~~~~~~~~~~~~~~la   84 (330)
                      +..+.+..-.+.+.+..++++ +.+++..   ..+||+|+++++.++|.+|.+.|  +++||+|++++||++++....||
T Consensus        12 ~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la   91 (537)
T KOG1176|consen   12 NNTPLTPITFLGRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALA   91 (537)
T ss_pred             cCccccccccccccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            334444444444455455555 7888754   89999999999999999999776  89999999999999999999999


Q ss_pred             hhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhccCc------------------------------
Q 048729           85 VPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP------------------------------  134 (330)
Q Consensus        85 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~------------------------------  134 (330)
                      |+.+|+++.++++.+.+.++.++++.++++++|++......+........                              
T Consensus        92 ~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~  171 (537)
T KOG1176|consen   92 VPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMP  171 (537)
T ss_pred             HHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccc
Confidence            99999999999999999999999999999999999887776644331100                              


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       172 ~~~~~~~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~  251 (537)
T KOG1176|consen  172 EGLPDGIRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGG  251 (537)
T ss_pred             cCCCcccccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       252 ~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~  331 (537)
T KOG1176|consen  252 TTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQG  331 (537)
T ss_pred             ceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEe
Confidence                                                                                            


Q ss_pred             -------------hHH--HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCC
Q 048729          135 -------------QRA--RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDN  199 (330)
Q Consensus       135 -------------~~~--~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~  199 (330)
                                   ...  ..+.+.|.++.|. +..+.++ +|+.++++  +.|||+++|+.++.||+++|+.|++.|+++
T Consensus       332 YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~-~~~v~~e-~g~~l~~~--~~GEI~vrg~~imkGY~~NpeaT~~~~~~~  407 (537)
T KOG1176|consen  332 YGMTEAGGLITSNDWGPERKPGSVGRLLPGV-RVKVLDE-TGVSLGPN--QTGEICVRGPQVMKGYLKNPEATKEAFDDD  407 (537)
T ss_pred             eccccccCceeecCCCccCcccccCccccce-EEEeeCC-CCCCCCCC--CceEEEEECcccchhhcCChHHHHhhcccC
Confidence                         111  3567777777764 6666666 99999999  889999999999999999999999999977


Q ss_pred             CeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCC
Q 048729          200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTK  279 (330)
Q Consensus       200 g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  279 (330)
                      |||+|||+|+.|+||++++++|.+|+||.+|++|+|.|||++|..||.|.||+|++.+++.+|+.++|+|+.+++..   
T Consensus       408 GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~---  484 (537)
T KOG1176|consen  408 GWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGST---  484 (537)
T ss_pred             CccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999777   


Q ss_pred             CCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          280 KPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       280 ~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                       .+.+++.+++++++++|++|..++|+++||+|++||+.|+.|++.+.++
T Consensus       485 -lte~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~  533 (537)
T KOG1176|consen  485 -LTEKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKL  533 (537)
T ss_pred             -CCHHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhc
Confidence             8999999999999999999999999999999999999999999999765

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-51  Score=358.62  Aligned_cols=319  Identities=31%  Similarity=0.457  Sum_probs=286.9

Q ss_pred             ccCCCCCCCCCCCHHHHHHHHHHhcCCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Q 048729            4 LLLPNSANSTPLTTLGFLERAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYEL   81 (330)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~   81 (330)
                      ...+...+....|+.+.+...++..||+.|.++.  +.++||+|+.+.++++|..|.++|+++||||++..||+.+|+.+
T Consensus        39 ~~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~  118 (596)
T KOG1177|consen   39 VHGCSQIPLDSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLC  118 (596)
T ss_pred             cCCCCCCCcccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHH
Confidence            3566777899999999999999999999999984  56799999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHH-----HHHHhccCc----------------------
Q 048729           82 QFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYL-----LLEALSLFP----------------------  134 (330)
Q Consensus        82 ~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~~~~~~~----------------------  134 (330)
                      .|||.++|.++++++|.+...+++..|++.+++++|+.+.+...     +.+......                      
T Consensus       119 ~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~  198 (596)
T KOG1177|consen  119 QLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILAD  198 (596)
T ss_pred             HHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecC
Confidence            99999999999999999999999999999999999998754432     222111111                      


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       199 ed~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i  278 (596)
T KOG1177|consen  199 EDHPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRI  278 (596)
T ss_pred             CCCcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEE
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       279 ~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vig  358 (596)
T KOG1177|consen  279 CIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIG  358 (596)
T ss_pred             EecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeC
Confidence                                                                                            


Q ss_pred             -----------------------------------------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecE
Q 048729          135 -----------------------------------------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGE  173 (330)
Q Consensus       135 -----------------------------------------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Ge  173 (330)
                                                               .......+.|..+.+. |..++|. .|.+++-+  ..||
T Consensus       359 Ga~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~-Ea~iv~~-~g~~v~~~--~~Ge  434 (596)
T KOG1177|consen  359 GAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHY-EAAIVDK-DGSEVPLG--TKGE  434 (596)
T ss_pred             CCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccc-ccccccC-CCCccccC--CCce
Confidence                                                     3344556667667775 7888896 99999999  7799


Q ss_pred             EEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEE
Q 048729          174 VVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAV  253 (330)
Q Consensus       174 l~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v  253 (330)
                      |+++|++.+.|||++++.+.+....|.||+|||++.+|++|.++++||.+|+|+.+|++|+|.+||+.|.+||.|.++.|
T Consensus       435 l~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~V  514 (596)
T KOG1177|consen  435 LLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHV  514 (596)
T ss_pred             EEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEE
Confidence            99999999999999999999888879999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          254 VARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       254 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++++|+..++.+||+|-+..+....  .+.++|+.+|+.++.++.+|++|+++++||+|-+|||+|-+++++.+.
T Consensus       515 VGV~D~R~GE~VCA~vRLqe~~e~~--~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~  587 (596)
T KOG1177|consen  515 VGVPDERLGEEVCACVRLQEGAEGK--TTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKG  587 (596)
T ss_pred             EccCCCcccceEEEEEEeecccccc--ccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHHHHHHHHh
Confidence            9999999999999999999887532  588999999999999999999999999999999999999999998863

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4e-52  Score=354.22  Aligned_cols=309  Identities=29%  Similarity=0.450  Sum_probs=279.0

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      +...|+.+.+.+.++++||++|+++.++.+||+||.+++.++|..|+..|+++||+|.+-+||..++++.+||++++|+.
T Consensus        25 W~d~~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~  104 (542)
T COG1021          25 WQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVA  104 (542)
T ss_pred             ccCCcHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccch----HHHHH-HhccCc--------------------------------
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHT----YLLLE-ALSLFP--------------------------------  134 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~----~~~~~-~~~~~~--------------------------------  134 (330)
                      ++.--+.....++.++....+++.++.+....    +.+.. .....+                                
T Consensus       105 PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~~~~~~a~~~~~a~  184 (542)
T COG1021         105 PVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGLFTPAP  184 (542)
T ss_pred             hhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhhhhhCccccCCcCC
Confidence            98777777788999999999999988764211    11111 111000                                


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       185 ~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~  264 (542)
T COG1021         185 PADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAP  264 (542)
T ss_pred             CCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       265 ~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLv  344 (542)
T COG1021         265 DPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLV  344 (542)
T ss_pred             CCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhh
Confidence                                                                                            


Q ss_pred             -------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCce
Q 048729          135 -------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDI  207 (330)
Q Consensus       135 -------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~  207 (330)
                             ..+....+.|+|+-..-|++|+|. +|+++.+|  +.|+|..+||+-.+||+..|+.+...|+.+|||+|||+
T Consensus       345 nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~-dg~pv~pG--E~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~  421 (542)
T COG1021         345 NYTRLDDPPEIIIHTQGRPLSPDDEVRVVDA-DGNPVAPG--EVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDL  421 (542)
T ss_pred             cccccCCchHheeecCCCcCCCcceeEEecC-CCCCCCCC--CcceeeecCCeeeeeeccCchhhhhccCcCCceecCce
Confidence                   344556778999977679999999 99999999  99999999999999999999999999999999999999


Q ss_pred             EEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHH
Q 048729          208 GVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEII  287 (330)
Q Consensus       208 ~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  287 (330)
                      +++|++|++.+.||.+|+|+..|++|...+||+.|..||.|.+++++..++...|++.|++|+.++..     ....+++
T Consensus       422 V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~-----~~~~qlr  496 (542)
T COG1021         422 VRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPP-----LRAAQLR  496 (542)
T ss_pred             eEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCC-----CCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998875     5789999


Q ss_pred             HHHHhc-CCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          288 EYCRAR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       288 ~~l~~~-l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +++++. +..|++|++|.++++||.|+-|||||++|++++..
T Consensus       497 ~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~  538 (542)
T COG1021         497 RFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLAS  538 (542)
T ss_pred             HHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhh
Confidence            999775 89999999999999999999999999999998764

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.3e-49  Score=376.30  Aligned_cols=313  Identities=36%  Similarity=0.575  Sum_probs=277.6

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCcEEEeCCee--ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729           10 ANSTPLTTLGFLERAAAAYTDCPSLVYNNTT--YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPM   87 (330)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~--~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~   87 (330)
                      ......++.+++.+.+..+|+++|+++.+..  +||+||.+++.++|++|.+.|+++||+|+++++|+++++.++|||++
T Consensus         6 ~~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~   85 (534)
T COG0318           6 RMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALR   85 (534)
T ss_pred             cccccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence            3455689999999999999999999998877  99999999999999999999999999999999999999999999999


Q ss_pred             cCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc---------------------------c--------
Q 048729           88 SGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS---------------------------L--------  132 (330)
Q Consensus        88 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~---------------------------~--------  132 (330)
                      +|++++|+++.+...++.++++..+++.+++...+...+.....                           .        
T Consensus        86 ~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (534)
T COG0318          86 AGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGPDADA  165 (534)
T ss_pred             cCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHHHhhccCCccccc
Confidence            99999999999999999999999999999998652221111100                           0        


Q ss_pred             --C-c---------------------------------------------------------------------------
Q 048729          133 --F-P---------------------------------------------------------------------------  134 (330)
Q Consensus       133 --~-~---------------------------------------------------------------------------  134 (330)
                        . +                                                                           
T Consensus       166 ~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~  245 (534)
T COG0318         166 RPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVL  245 (534)
T ss_pred             CCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEe
Confidence              0 0                                                                           


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       246 ~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG  325 (534)
T COG0318         246 LSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYG  325 (534)
T ss_pred             CCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeec
Confidence                                                                                            


Q ss_pred             -------------hH-HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCC
Q 048729          135 -------------QR-ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNG  200 (330)
Q Consensus       135 -------------~~-~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g  200 (330)
                                   .. .....+.|.+++|. +++|+|++++.++| +  ++|||+++||+++.|||++|+.+...|..+|
T Consensus       326 ~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~-~v~Ivd~~~~~~~p-g--~vGei~irgp~v~~GY~~~pe~t~~~f~~~g  401 (534)
T COG0318         326 LTETSPVVTINPPDDLLAKPGSVGRPLPGV-EVRIVDPDGGEVLP-G--EVGEIWVRGPNVMKGYWNRPEATAEAFDEDG  401 (534)
T ss_pred             ccccCceeecCCCchhhhcCCcccccCCCc-EEEEEeCCCCccCC-C--CceEEEEECchhhhhhcCChHHHHHhhccCC
Confidence                         11 12455568999996 99999985665666 5  7899999999999999999999998887559


Q ss_pred             eEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCC
Q 048729          201 WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKK  280 (330)
Q Consensus       201 ~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  280 (330)
                      ||+|||+|++|++|++++.||.+|+|+++|++|+|.+||+++.+||.|.+++|++.+++.++++++++++++++..  ..
T Consensus       402 W~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~--~~  479 (534)
T COG0318         402 WLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD--AE  479 (534)
T ss_pred             eeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC--CC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998742  11


Q ss_pred             CCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          281 PTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       281 ~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .+.+++.+.++.+++.+.+|+.+++++++|+|++||++|+.|++.+..
T Consensus       480 ~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         480 LTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             CCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence            478999999999999999999999999999999999999999998864

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.1e-48  Score=358.93  Aligned_cols=299  Identities=30%  Similarity=0.437  Sum_probs=260.4

Q ss_pred             HHHHHHH-hcCCCcEEEeCC-----eeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           20 FLERAAA-AYTDCPSLVYNN-----TTYTWSETHRRCLQVASSLSS-VGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        20 ~l~~~~~-~~p~~~a~~~~~-----~~~T~~el~~~~~~~a~~L~~-~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      .+.+... ..+|++|+++.+     +++||+||++.++++|+.|++ .|+ +||||++++|+.++.++++|||+++||++
T Consensus        14 ~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~   92 (528)
T COG0365          14 ALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP   92 (528)
T ss_pred             hhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence            3555554 347899999853     679999999999999999985 678 99999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHH---------HHHHhc---------------------cC-----c---
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYL---------LLEALS---------------------LF-----P---  134 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~---------~~~~~~---------------------~~-----~---  134 (330)
                      +|+.+.++++.+...+++.+++++++.+.....         +.....                     ..     .   
T Consensus        93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~~~~~~~~~~~~~~~~~~~~~~~d  172 (528)
T COG0365          93 AVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADD  172 (528)
T ss_pred             eecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccccccHHHHhhccCCCCCccccCCCC
Confidence            999999999999999999999999987643321         111110                     00     0   


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       173 pl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~  252 (528)
T COG0365         173 PLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYS  252 (528)
T ss_pred             eEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       253 ~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~  332 (528)
T COG0365         253 PERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFI  332 (528)
T ss_pred             HHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCcccc
Confidence                                                                                            


Q ss_pred             hH--HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecC--cccccccCCchhhhccccCCCeEEeCceEEE
Q 048729          135 QR--ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGG--CVTVGYFKDKEATRRCISDNGWFYTGDIGVM  210 (330)
Q Consensus       135 ~~--~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~--~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~  210 (330)
                      ..  .....+.|.|++|. ++.++|++ |++++.+  + |+|+++.+  +++++||++|+...+.|.+. ||.|||.+++
T Consensus       333 ~~~~~~~~g~~g~p~pG~-~~~vvdd~-g~~~~~~--~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~  406 (528)
T COG0365         333 AGRPPVKNGSSGLPLPGY-AVRRVDDE-GNPVPPG--V-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAER  406 (528)
T ss_pred             CCCCCcCCCCCCCCCCCc-eeEEECCC-CCcCCCC--c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeEE
Confidence            11  11344558999998 99999995 9999998  7 99999987  89999999999998888734 9999999999


Q ss_pred             ecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHH
Q 048729          211 HADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYC  290 (330)
Q Consensus       211 ~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l  290 (330)
                      |+||+++|.||.||+||+.|.|+++.+||+.|.+||.|.|++|++.+++..++.+.+||+++++...+  ...++|.+.+
T Consensus       407 DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~--~L~~ei~~~v  484 (528)
T COG0365         407 DEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN--ELAEEIRRHV  484 (528)
T ss_pred             ccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH--HHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999997543  5678888888


Q ss_pred             HhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhh
Q 048729          291 RARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAK  327 (330)
Q Consensus       291 ~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~  327 (330)
                      ++.+.++..|+.|.++++||+|.+||+.|+.|++.+.
T Consensus       485 r~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~  521 (528)
T COG0365         485 ARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILH  521 (528)
T ss_pred             HhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHh
Confidence            8888889999999999999999999999999999886

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-48  Score=368.04  Aligned_cols=299  Identities=31%  Similarity=0.446  Sum_probs=264.9

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN   94 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~   94 (330)
                      .++.++|.+.++.+||++|+++.++++||+||.+.++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~  128 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIIL  128 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh---------------------------------cc--Cc-----
Q 048729           95 INTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL---------------------------------SL--FP-----  134 (330)
Q Consensus        95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~---------------------------------~~--~~-----  134 (330)
                      +++.++.+++.++++..+++++++++.....+....                                 ..  ..     
T Consensus       129 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (549)
T PRK07788        129 LNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAPLPKPPKP  208 (549)
T ss_pred             eCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCCCCCCCCCCCCC
Confidence            999999999999999999999999876544331110                                 00  00     


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       209 ~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~  288 (549)
T PRK07788        209 GGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRRFDPEATL  288 (549)
T ss_pred             CcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECCCCCHHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------------h---------
Q 048729          135 ----------------------------------------------------------------------Q---------  135 (330)
Q Consensus       135 ----------------------------------------------------------------------~---------  135 (330)
                                                                                            +         
T Consensus       289 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~  368 (549)
T PRK07788        289 EDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATP  368 (549)
T ss_pred             HHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccCh
Confidence                                                                                  0         


Q ss_pred             --HHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecC
Q 048729          136 --RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHAD  213 (330)
Q Consensus       136 --~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~  213 (330)
                        ......++|.|++|. +++++|+ ++++++.+  +.|||+++|++++.||++++...   .. +|||+|||++++|++
T Consensus       369 ~~~~~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~---~~-~g~~~TGDl~~~~~~  440 (549)
T PRK07788        369 EDLAEAPGTVGRPPKGV-TVKILDE-NGNEVPRG--VVGRIFVGNGFPFEGYTDGRDKQ---II-DGLLSSGDVGYFDED  440 (549)
T ss_pred             hhhhhcCCCcccCCCCc-EEEEECC-CcCCCCCC--CeEEEEEeCCCccccccCCCccc---cc-CCceecCceEEEcCC
Confidence              011123567777775 7888888 88899887  88999999999999999887652   22 799999999999999


Q ss_pred             ceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhc
Q 048729          214 GYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR  293 (330)
Q Consensus       214 G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~  293 (330)
                      |.+++.||.||+||++|++|+|.+||+.+.++|+|.+++|++..++..+++++++|++.++..    .+.+++.++++++
T Consensus       441 g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~----~~~~~l~~~~~~~  516 (549)
T PRK07788        441 GLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAA----LDEDAIKDYVRDN  516 (549)
T ss_pred             CCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCC----CCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999888899999999887654    6789999999999


Q ss_pred             CCCCCCCceEEEccCCCCCCCCcccHHHHHHH
Q 048729          294 LPRYMVPRKVVFSEELPKTSTGKIQKYLLREF  325 (330)
Q Consensus       294 l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~  325 (330)
                      |+.|++|..++++++||+|++||++|++|+++
T Consensus       517 l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~  548 (549)
T PRK07788        517 LARYKVPRDVVFLDELPRNPTGKVLKRELREM  548 (549)
T ss_pred             hhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence            99999999999999999999999999999864

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=7.6e-47  Score=361.63  Aligned_cols=316  Identities=49%  Similarity=0.836  Sum_probs=261.9

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      .+.|+.++|.+.++.+|+++|+++.+.++||+||.++++++|++|.+.|+++||+|+++++|+++++..+|||+++|+++
T Consensus        12 ~~~~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~   91 (579)
T PLN03102         12 VPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVL   91 (579)
T ss_pred             ccccHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEE
Confidence            44789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH----------------------------------------hc-
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA----------------------------------------LS-  131 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~----------------------------------------~~-  131 (330)
                      +|+++.++.+++.++++..+++++++++.....+...                                        .. 
T Consensus        92 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (579)
T PLN03102         92 NPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEP  171 (579)
T ss_pred             eeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHHhccCC
Confidence            9999999999999999999999999865433211100                                        00 


Q ss_pred             ----------cCc-------------------------------------------------------------------
Q 048729          132 ----------LFP-------------------------------------------------------------------  134 (330)
Q Consensus       132 ----------~~~-------------------------------------------------------------------  134 (330)
                                ...                                                                   
T Consensus       172 ~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~  251 (579)
T PLN03102        172 TPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAAR  251 (579)
T ss_pred             CCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHHHHh
Confidence                      000                                                                   


Q ss_pred             ---------------------------------------------------------------hHHHHhhccCC---ccc
Q 048729          135 ---------------------------------------------------------------QRARLKARQGV---KTV  148 (330)
Q Consensus       135 ---------------------------------------------------------------~~~~~~~~~G~---~~~  148 (330)
                                                                                     .........|.   ..|
T Consensus       252 g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~i~~~Y  331 (579)
T PLN03102        252 GGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAY  331 (579)
T ss_pred             cCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHHcCCeEEeec
Confidence                                                                           00000011122   236


Q ss_pred             CceeEE--------------------------------------EeCCCCCcccCCCCceecEEEEecCcccccccCCch
Q 048729          149 GLAEVD--------------------------------------VVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKE  190 (330)
Q Consensus       149 g~te~~--------------------------------------i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~  190 (330)
                      |.||..                                      +.+.+++++++.++++.|||+++|++++.||+++++
T Consensus       332 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~  411 (579)
T PLN03102        332 GLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPK  411 (579)
T ss_pred             CccccCccccccccccccccCCcccccccccCCCcccccccceEEeccccccccCCCCCCceEEEEECcchhhhhcCChh
Confidence            777642                                      112123344443322579999999999999999999


Q ss_pred             hhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEE
Q 048729          191 ATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVS  270 (330)
Q Consensus       191 ~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~  270 (330)
                      .+...|. +|||+|||+|++|++|++++.||.+|+||++|++|+|.+||+.+.+||.|.+++|++.+++..++.++++|+
T Consensus       412 ~t~~~f~-~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~  490 (579)
T PLN03102        412 ATSEAFK-HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVV  490 (579)
T ss_pred             hhHhhhc-cCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEE
Confidence            9888887 899999999999999999999999999999999999999999999999999999999999888889999998


Q ss_pred             ecCCcccC------CCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          271 LKRDLELT------KKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       271 ~~~~~~~~------~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      +..+....      ......++.+.++++|++|++|..+++++++|+|++||++|++|++++.++
T Consensus       491 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~~  555 (579)
T PLN03102        491 LEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKGL  555 (579)
T ss_pred             ecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHHh
Confidence            87654311      001457899999999999999999999999999999999999999998764

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=5.5e-47  Score=367.36  Aligned_cols=310  Identities=23%  Similarity=0.318  Sum_probs=260.9

Q ss_pred             CCCH-HHHHHHHHH-hcCCCcEEEeC------CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHh
Q 048729           14 PLTT-LGFLERAAA-AYTDCPSLVYN------NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGV   85 (330)
Q Consensus        14 ~~~~-~~~l~~~~~-~~p~~~a~~~~------~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~   85 (330)
                      .+|+ .++|.++++ .+|+++|+++.      ++++||+||.+++.++|++|++.|+++||+|++++||++++++++|||
T Consensus        86 ~~N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~  165 (666)
T PLN02654         86 KTNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLAC  165 (666)
T ss_pred             EeeHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            3455 456666665 48999999873      368999999999999999999999999999999999999999999999


Q ss_pred             hhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHH---------H----H-------------------------
Q 048729           86 PMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYL---------L----L-------------------------  127 (330)
Q Consensus        86 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~---------~----~-------------------------  127 (330)
                      +++|++++|+++.++++.+..+++..++++++++......         +    .                         
T Consensus       166 ~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (666)
T PLN02654        166 ARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKRED  245 (666)
T ss_pred             HHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccc
Confidence            9999999999999999999999999999999986542100         0    0                         


Q ss_pred             ------------H---H-hcc-----Cc----------------------------------------------------
Q 048729          128 ------------E---A-LSL-----FP----------------------------------------------------  134 (330)
Q Consensus       128 ------------~---~-~~~-----~~----------------------------------------------------  134 (330)
                                  .   . ...     ..                                                    
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~  325 (666)
T PLN02654        246 TKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTAD  325 (666)
T ss_pred             cccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCC
Confidence                        0   0 000     00                                                    


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       326 ~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~  405 (666)
T PLN02654        326 CGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSV  405 (666)
T ss_pred             chhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEe
Confidence                                                                                            


Q ss_pred             -------hH-----------------------------------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceec
Q 048729          135 -------QR-----------------------------------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLG  172 (330)
Q Consensus       135 -------~~-----------------------------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~G  172 (330)
                             ..                                   ...++++|.|++|+ +++|+|+ +|++++.+  +.|
T Consensus       406 Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~-~v~i~d~-~g~~~~~~--~~G  481 (666)
T PLN02654        406 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV-QPVIVDE-KGKEIEGE--CSG  481 (666)
T ss_pred             cCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCc-eEEEECC-CCCCCCCC--Cce
Confidence                   00                                   00123467788886 8999998 88888776  789


Q ss_pred             EEEEec--CcccccccCCchhhhcccc--CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCc
Q 048729          173 EVVLRG--GCVTVGYFKDKEATRRCIS--DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAV  248 (330)
Q Consensus       173 el~v~~--~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v  248 (330)
                      ||++++  |+++.|||++++.+...+.  .+|||+|||++++|+||+++++||.||+||++|++|+|.+||++|.+||+|
T Consensus       482 el~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V  561 (666)
T PLN02654        482 YLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQC  561 (666)
T ss_pred             EEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCe
Confidence            999998  6899999999988776553  279999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          249 NEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       249 ~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .+++|++.+++..++.+.++|+++++...+ ....+++.+.++++|+++++|+.|+++++||+|++||++|+.|++.+.+
T Consensus       562 ~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~-~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~  640 (666)
T PLN02654        562 AEAAVVGIEHEVKGQGIYAFVTLVEGVPYS-EELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR  640 (666)
T ss_pred             eeEEEEeeEcCCCCeEEEEEEEECCCCCCC-HHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcC
Confidence            999999999998899999999998875411 0223578899999999999999999999999999999999999998754

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-46  Score=353.38  Aligned_cols=304  Identities=31%  Similarity=0.506  Sum_probs=268.2

Q ss_pred             CHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee
Q 048729           16 TTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN   94 (330)
Q Consensus        16 ~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~   94 (330)
                      .+.+.|.+.++.+||++|+++.++.+||.||.+.++++|++|. ..|+++||+|+++++|+++++++++|++++|++++|
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~   82 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVP   82 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence            5789999999999999999999999999999999999999998 479999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhccC-----------------------------c-----------
Q 048729           95 INTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLF-----------------------------P-----------  134 (330)
Q Consensus        95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-----------------------------~-----------  134 (330)
                      +++.++++++..+++..+++++++++.....+.......                             .           
T Consensus        83 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG  162 (496)
T PRK06839         83 LNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITSLKEIEDRKIDNFVEKNESASFIICYTSGTTG  162 (496)
T ss_pred             cCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEecchHhhhccCCCCCCCCCCCCcEEEEeCCCCCC
Confidence            999999999999999999999998865543322110000                             0           


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       163 ~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~  242 (496)
T PRK06839        163 KPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVV  242 (496)
T ss_pred             CCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEE
Confidence                                                                                            


Q ss_pred             -------------------------------------hH-------------------------------HHHhhccCCc
Q 048729          135 -------------------------------------QR-------------------------------ARLKARQGVK  146 (330)
Q Consensus       135 -------------------------------------~~-------------------------------~~~~~~~G~~  146 (330)
                                                           ..                               .....++|.|
T Consensus       243 ~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p  322 (496)
T PRK06839        243 MGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKP  322 (496)
T ss_pred             EehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHhCCeeEeeccCCCCCcceEecccccccccCCCCccc
Confidence                                                 00                               0112245666


Q ss_pred             ccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeE
Q 048729          147 TVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVI  226 (330)
Q Consensus       147 ~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~i  226 (330)
                      ++|. +++|+|+ ++..++.+  +.|||+++|++++.||+++++.+...+. +|||+|||++++|++|.+++.||.+|+|
T Consensus       323 ~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~~~~~GR~~d~i  397 (496)
T PRK06839        323 VLFC-DYELIDE-NKNKVEVG--EVGELLIRGPNVMKEYWNRPDATEETIQ-DGWLCTGDLARVDEDGFVYIVGRKKEMI  397 (496)
T ss_pred             CCCc-eEEEECC-CcCCCCCC--CceEEEEECCCcchhhcCChHHHHHHHc-CCCeeecceEEEcCCCcEEEeccccceE
Confidence            6674 7888887 67778877  8899999999999999999998887776 8999999999999999999999999999


Q ss_pred             EeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEc
Q 048729          227 ISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFS  306 (330)
Q Consensus       227 k~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v  306 (330)
                      |++|.+|+|.+||+.+.++|+|.++++++.+++..++.++++++..++..    ...+++++.++++|+.+++|..++++
T Consensus       398 ~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----~~~~~l~~~~~~~l~~~~~P~~~~~v  473 (496)
T PRK06839        398 ISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSV----LIEKDVIEHCRLFLAKYKIPKEIVFL  473 (496)
T ss_pred             EECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCC----CCHHHHHHHHHhhCcCCCCCcEEEEe
Confidence            99999999999999999999999999999999888889999999887654    66789999999999999999999999


Q ss_pred             cCCCCCCCCcccHHHHHHHhhh
Q 048729          307 EELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       307 ~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +++|+|++||++|++|+++.++
T Consensus       474 ~~~P~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        474 KELPKNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             ccCCCCccccccHHHHHHHhhc
Confidence            9999999999999999998865

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.9e-47  Score=364.43  Aligned_cols=309  Identities=20%  Similarity=0.304  Sum_probs=255.7

Q ss_pred             CHHHHHHHHHHh--cCCCcEEEeC------CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729           16 TTLGFLERAAAA--YTDCPSLVYN------NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPM   87 (330)
Q Consensus        16 ~~~~~l~~~~~~--~p~~~a~~~~------~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~   87 (330)
                      +..+++.+.++.  +|+++|+++.      .+++||+||.+.+.++|+.|++.|+++||+|+++++|++++++++|||++
T Consensus        60 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~  139 (647)
T PTZ00237         60 TCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCAR  139 (647)
T ss_pred             HHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            345566666654  7999999873      36799999999999999999999999999999999999999999999999


Q ss_pred             cCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccc---------hHHH--------------------------------
Q 048729           88 SGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLH---------TYLL--------------------------------  126 (330)
Q Consensus        88 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~---------~~~~--------------------------------  126 (330)
                      +|++++|+++.++++.+.+++++.+++++++++..         ...+                                
T Consensus       140 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  219 (647)
T PTZ00237        140 IGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIE  219 (647)
T ss_pred             hCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccccccccccc
Confidence            99999999999999999999999999999985310         0000                                


Q ss_pred             -----------HHHh--------cc------Cc-----------------------------------------------
Q 048729          127 -----------LEAL--------SL------FP-----------------------------------------------  134 (330)
Q Consensus       127 -----------~~~~--------~~------~~-----------------------------------------------  134 (330)
                                 .+..        ..      ..                                               
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~  299 (647)
T PTZ00237        220 TIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVV  299 (647)
T ss_pred             ccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEE
Confidence                       0000        00      00                                               


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       300 ~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l  379 (647)
T PTZ00237        300 FSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDL  379 (647)
T ss_pred             EEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCc
Confidence                                                                                            


Q ss_pred             ------------------------------------hHH-----------HHhhccCCcccCceeEEEeCCCCCcccCCC
Q 048729          135 ------------------------------------QRA-----------RLKARQGVKTVGLAEVDVVNPETGESVKRD  167 (330)
Q Consensus       135 ------------------------------------~~~-----------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~  167 (330)
                                                          +..           ....++|.|++|. +++|+|+ +|++++.+
T Consensus       380 ~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~-~~~i~d~-~g~~~~~g  457 (647)
T PTZ00237        380 SNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFI-KPSILSE-DGKELNVN  457 (647)
T ss_pred             chheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCc-eEEEECC-CCCCCCCC
Confidence                                                000           0013456666775 7888887 88889887


Q ss_pred             CceecEEEEecC---cccccccCCchhhhccccC-CCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHh
Q 048729          168 GVSLGEVVLRGG---CVTVGYFKDKEATRRCISD-NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLY  243 (330)
Q Consensus       168 ~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~-~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~  243 (330)
                        +.|||+++++   +++.|||++++.+.+.|.. +|||+|||+|++|++|+++++||+||+||++|++|+|.+||++|.
T Consensus       458 --e~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~  535 (647)
T PTZ00237        458 --EIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSIL  535 (647)
T ss_pred             --CceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHH
Confidence              8899999986   7899999999988877743 799999999999999999999999999999999999999999999


Q ss_pred             cCcCcceEEEEeecCCCCCceeEEEEEecCCcccCC---CCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHH
Q 048729          244 SITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTK---KPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKY  320 (330)
Q Consensus       244 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~  320 (330)
                      +||.|.+++|++.+++..++.++++|++.++.....   ....+++++.++++|+++++|+.|+++++||+|++||++|+
T Consensus       536 ~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~  615 (647)
T PTZ00237        536 KHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQ  615 (647)
T ss_pred             hCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHH
Confidence            999999999999999988899999999885421100   01235677888999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 048729          321 LLREFAKS  328 (330)
Q Consensus       321 ~l~~~~~~  328 (330)
                      .|++++.+
T Consensus       616 ~Lr~~~~~  623 (647)
T PTZ00237        616 IISKFLND  623 (647)
T ss_pred             HHHHHHcC
Confidence            99998753

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.9e-46  Score=358.02  Aligned_cols=319  Identities=26%  Similarity=0.367  Sum_probs=260.3

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcC
Q 048729           10 ANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG   89 (330)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G   89 (330)
                      +++.+.++.++|.+.++.+|+++|+++.++++||+||.+.+.++|++|.+.|+++||+|+++++|+++++++++||+++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~G   81 (563)
T PLN02860          2 ANHSQAHICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAG   81 (563)
T ss_pred             cchhhhHHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhcc
Confidence            46778899999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH---HHH-------------------------HHh-----------
Q 048729           90 AILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY---LLL-------------------------EAL-----------  130 (330)
Q Consensus        90 ~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---~~~-------------------------~~~-----------  130 (330)
                      ++++|+++.++.+++.++++..+++++++++....   .+.                         ...           
T Consensus        82 av~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (563)
T PLN02860         82 GIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALG  161 (563)
T ss_pred             EEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCccc
Confidence            99999999999999999999999999998754211   000                         000           


Q ss_pred             c-----cCc-----------------------------------------------------------------------
Q 048729          131 S-----LFP-----------------------------------------------------------------------  134 (330)
Q Consensus       131 ~-----~~~-----------------------------------------------------------------------  134 (330)
                      .     ...                                                                       
T Consensus       162 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~  241 (563)
T PLN02860        162 TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACH  241 (563)
T ss_pred             cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceE
Confidence            0     000                                                                       


Q ss_pred             ----------------------------------h----------------------------HHHHhhcc-C---Cccc
Q 048729          135 ----------------------------------Q----------------------------RARLKARQ-G---VKTV  148 (330)
Q Consensus       135 ----------------------------------~----------------------------~~~~~~~~-G---~~~~  148 (330)
                                                        .                            ...+.... |   ...|
T Consensus       242 v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~Y  321 (563)
T PLN02860        242 VLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAY  321 (563)
T ss_pred             EecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCC
Confidence                                              0                            00000001 2   2347


Q ss_pred             CceeEEE-------eCC--------------------------CCCcccCC--------CCceecEEEEecCcccccccC
Q 048729          149 GLAEVDV-------VNP--------------------------ETGESVKR--------DGVSLGEVVLRGGCVTVGYFK  187 (330)
Q Consensus       149 g~te~~i-------~d~--------------------------~~g~~~~~--------~~~~~Gel~v~~~~~~~gy~~  187 (330)
                      |.||+..       -++                          .-|++++.        +.++.|||+++|++++.|||+
T Consensus       322 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~~g~~Gel~v~g~~~~~GY~~  401 (563)
T PLN02860        322 GMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWG  401 (563)
T ss_pred             CccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCCCCceeEEEEecCcccccccC
Confidence            7777531       000                          01223221        112679999999999999999


Q ss_pred             CchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEE
Q 048729          188 DKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCA  267 (330)
Q Consensus       188 ~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~  267 (330)
                      +++.+...+..+|||+|||+|++|++|+++++||.+|+||++|++|+|.+||+.+.+||+|.+++|++.+++..++.+++
T Consensus       402 ~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a  481 (563)
T PLN02860        402 QNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVA  481 (563)
T ss_pred             CccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEE
Confidence            99999888877899999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             EEEecCCccc----------CCCCCHHHHHHHHHh-cCCCCCCCceEEEc-cCCCCCCCCcccHHHHHHHhhh
Q 048729          268 FVSLKRDLEL----------TKKPTEKEIIEYCRA-RLPRYMVPRKVVFS-EELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       268 ~v~~~~~~~~----------~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v-~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++++.++...          ......+++.+++++ +|++|++|..++++ ++||+|++||++|++|++++.+
T Consensus       482 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~~  554 (563)
T PLN02860        482 CVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLS  554 (563)
T ss_pred             EEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHHHHHH
Confidence            9998765210          011456789999987 59999999998765 6799999999999999998854

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.2e-46  Score=356.57  Aligned_cols=304  Identities=28%  Similarity=0.414  Sum_probs=266.8

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSS-VGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~-~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      .|+.++|.+.++.+|+++|+++.++.+||+||.+++.++|++|.+ .|+++||+|+++++|++++++++|||+++|++++
T Consensus        24 ~~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v  103 (562)
T PRK05677         24 PNIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV  103 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence            489999999999999999999999999999999999999999996 6999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH---------------------------------------------
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE---------------------------------------------  128 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~---------------------------------------------  128 (330)
                      |+++.++.+++.++++..++++++++......+..                                             
T Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (562)
T PRK05677        104 NTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQ  183 (562)
T ss_pred             ecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccccCCcc
Confidence            99999999999999999999999874322111000                                             


Q ss_pred             ------Hh-----cc------Cc---------------------------------------------------------
Q 048729          129 ------AL-----SL------FP---------------------------------------------------------  134 (330)
Q Consensus       129 ------~~-----~~------~~---------------------------------------------------------  134 (330)
                            ..     ..      ..                                                         
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h~  263 (562)
T PRK05677        184 AVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHI  263 (562)
T ss_pred             cccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHHH
Confidence                  00     00      00                                                         


Q ss_pred             ------------------------------------------------------------------------------h-
Q 048729          135 ------------------------------------------------------------------------------Q-  135 (330)
Q Consensus       135 ------------------------------------------------------------------------------~-  135 (330)
                                                                                                    . 
T Consensus       264 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~~~~  343 (562)
T PRK05677        264 YAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATA  343 (562)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCHHHH
Confidence                                                                                          0 


Q ss_pred             --HHH---------------------------HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCccccccc
Q 048729          136 --RAR---------------------------LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYF  186 (330)
Q Consensus       136 --~~~---------------------------~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~  186 (330)
                        ...                           ...+.|.+++|. +++++|+ ++.+++.+  +.|||+++|+.++.||+
T Consensus       344 ~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~-~v~i~d~-~~~~~~~g--~~Gel~v~g~~~~~gY~  419 (562)
T PRK05677        344 ERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPST-LCKVIDD-DGNELPLG--EVGELCVKGPQVMKGYW  419 (562)
T ss_pred             HHHHHHcCCCeeccCCccccCcceeecCccCCCCCccCccCCCC-EEEEECC-CCCCCCCC--CCeEEEEecCccchhhc
Confidence              000                           113467777775 8888988 78899888  88999999999999999


Q ss_pred             CCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeE
Q 048729          187 KDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPC  266 (330)
Q Consensus       187 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~  266 (330)
                      ++++.+.+.|..+|||+|||+|++|++|.+++.||.+|++|++|.+|+|.+||+.|.++|+|.+++|++.+++..++.++
T Consensus       420 ~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~  499 (562)
T PRK05677        420 QRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIK  499 (562)
T ss_pred             CCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEE
Confidence            99999998887789999999999999999999999999999999999999999999999999999999999887788888


Q ss_pred             EEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHh
Q 048729          267 AFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFA  326 (330)
Q Consensus       267 ~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~  326 (330)
                      +++++.++..    .+.+++.+.++++|++|++|..|+++++||+|++||++|++|++.+
T Consensus       500 ~~v~~~~~~~----~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~  555 (562)
T PRK05677        500 VFVVVKPGET----LTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEE  555 (562)
T ss_pred             EEEEeCCCCC----CCHHHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHH
Confidence            8888776544    6778999999999999999999999999999999999999999865

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=4.4e-46  Score=353.93  Aligned_cols=314  Identities=33%  Similarity=0.448  Sum_probs=273.4

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Q 048729            5 LLPNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFG   84 (330)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la   84 (330)
                      ..+++.+....++.++|.+.++.+||++|+++.++++||+||.+.++++|.+|.+.|+++||+|+++++|++++++.++|
T Consensus        11 ~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA   90 (542)
T PRK06155         11 RAVDPLPPSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLG   90 (542)
T ss_pred             hhcccCCccccCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHH
Confidence            34566777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc---------------------------------
Q 048729           85 VPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS---------------------------------  131 (330)
Q Consensus        85 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~---------------------------------  131 (330)
                      |+++|++++|+++.++.+++..+++..++++++++......+.....                                 
T Consensus        91 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (542)
T PRK06155         91 CAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDA  170 (542)
T ss_pred             HHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchhhhcccCC
Confidence            99999999999999999999999999999999987644332211000                                 


Q ss_pred             -----cCc------------------------------------------------------------------------
Q 048729          132 -----LFP------------------------------------------------------------------------  134 (330)
Q Consensus       132 -----~~~------------------------------------------------------------------------  134 (330)
                           ...                                                                        
T Consensus       171 ~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~  250 (542)
T PRK06155        171 PAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYV  250 (542)
T ss_pred             CCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEE
Confidence                 000                                                                        


Q ss_pred             ---------------------------------------------------------hHHH-------------------
Q 048729          135 ---------------------------------------------------------QRAR-------------------  138 (330)
Q Consensus       135 ---------------------------------------------------------~~~~-------------------  138 (330)
                                                                               ....                   
T Consensus       251 ~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~v~~~YG~tE~~  330 (542)
T PRK06155        251 LEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGVDLLDGYGSTETN  330 (542)
T ss_pred             eeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcCCCHHHHHHHHHHcCCCEEeeecccccC
Confidence                                                                     0000                   


Q ss_pred             ----------HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecC---cccccccCCchhhhccccCCCeEEeC
Q 048729          139 ----------LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGG---CVTVGYFKDKEATRRCISDNGWFYTG  205 (330)
Q Consensus       139 ----------~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~~g~~~TG  205 (330)
                                ...+.|.+..|. +++|+|+ ++++++.+  +.|||+++|+   +++.||+++++.+...|. ++||+||
T Consensus       331 ~~~~~~~~~~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~-~~~~~TG  405 (542)
T PRK06155        331 FVIAVTHGSQRPGSMGRLAPGF-EARVVDE-HDQELPDG--EPGELLLRADEPFAFATGYFGMPEKTVEAWR-NLWFHTG  405 (542)
T ss_pred             ccccCCCCCCCCCCcCccCCCc-eEEEECC-CCCCCCCC--CceEEEEecCCccccchhhcCCHHHHHHhhc-CCcEecc
Confidence                      012344555664 6778887 78888888  7899999998   699999999998888876 8999999


Q ss_pred             ceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHH
Q 048729          206 DIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKE  285 (330)
Q Consensus       206 D~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  285 (330)
                      |+++++++|.++++||.+|++|++|.+|+|.+||+.+.++|+|.+++|++.+++..++.+.+++++..+..    .+..+
T Consensus       406 D~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~----~~~~~  481 (542)
T PRK06155        406 DRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTA----LEPVA  481 (542)
T ss_pred             ceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCC----CCHHH
Confidence            99999999999999999999999999999999999999999999999999998877788888888776654    67899


Q ss_pred             HHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhh
Q 048729          286 IIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAK  327 (330)
Q Consensus       286 l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~  327 (330)
                      +.++++++++.+++|..|.+++++|+|++||++|++|++++-
T Consensus       482 ~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~  523 (542)
T PRK06155        482 LVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGV  523 (542)
T ss_pred             HHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhcc
Confidence            999999999999999999999999999999999999998763

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=3.3e-46  Score=360.63  Aligned_cols=308  Identities=28%  Similarity=0.393  Sum_probs=260.5

Q ss_pred             CHHHHHHHHHHhcCCCcEEEeCC------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcC
Q 048729           16 TTLGFLERAAAAYTDCPSLVYNN------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG   89 (330)
Q Consensus        16 ~~~~~l~~~~~~~p~~~a~~~~~------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G   89 (330)
                      ...+.|.++++.+|+++|+++.+      +++||+||.+.+.++|++|.+.|+++||+|+++++|++++++++|||+++|
T Consensus        58 ~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G  137 (625)
T TIGR02188        58 VSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIG  137 (625)
T ss_pred             HHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence            44567777888899999998643      589999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH---------H----HHHH---------------------------
Q 048729           90 AILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY---------L----LLEA---------------------------  129 (330)
Q Consensus        90 ~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~----~~~~---------------------------  129 (330)
                      ++++|+++.++++.+.++++..+++++++++....         .    +...                           
T Consensus       138 av~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (625)
T TIGR02188       138 AIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWW  217 (625)
T ss_pred             CEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccccH
Confidence            99999999999999999999999999998654210         0    0000                           


Q ss_pred             ------h-cc-----C----c-----------------------------------------------------------
Q 048729          130 ------L-SL-----F----P-----------------------------------------------------------  134 (330)
Q Consensus       130 ------~-~~-----~----~-----------------------------------------------------------  134 (330)
                            . ..     .    .                                                           
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~  297 (625)
T TIGR02188       218 HDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIV  297 (625)
T ss_pred             HHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHH
Confidence                  0 00     0    0                                                           


Q ss_pred             ----------------------------------------------------------------------------h---
Q 048729          135 ----------------------------------------------------------------------------Q---  135 (330)
Q Consensus       135 ----------------------------------------------------------------------------~---  135 (330)
                                                                                                  .   
T Consensus       298 ~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~  377 (625)
T TIGR02188       298 YGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMW  377 (625)
T ss_pred             HHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHH
Confidence                                                                                        0   


Q ss_pred             -H-------------------------------HHHhhccCCcccCceeEEEeCCCCCcccC-CCCceecEEEEec--Cc
Q 048729          136 -R-------------------------------ARLKARQGVKTVGLAEVDVVNPETGESVK-RDGVSLGEVVLRG--GC  180 (330)
Q Consensus       136 -~-------------------------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~-~~~~~~Gel~v~~--~~  180 (330)
                       .                               .....++|.|++|+ +++++|+ +|++++ .+  +.|||+++|  ++
T Consensus       378 ~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~-~~~i~d~-~g~~~~~~g--~~GeL~v~~p~p~  453 (625)
T TIGR02188       378 YYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGI-EPAVVDE-EGNPVEGPG--EGGYLVIKQPWPG  453 (625)
T ss_pred             HHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCc-eEEEECC-CCCCCCCCC--CeEEEEEccCCCc
Confidence             0                               00123466777776 8888886 888888 67  889999999  58


Q ss_pred             ccccccCCchhhhcccc--CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecC
Q 048729          181 VTVGYFKDKEATRRCIS--DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPD  258 (330)
Q Consensus       181 ~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  258 (330)
                      ++.|||++++.+...+.  .+|||+|||++++|++|+++++||+||+||++|++|+|.+||++|.+||+|.+++|++.++
T Consensus       454 ~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~  533 (625)
T TIGR02188       454 MLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPD  533 (625)
T ss_pred             ccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEc
Confidence            99999999987766553  3789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          259 MFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       259 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +..++.++++|++.++.... ....+++++.++++|+++++|+.|+++++||+|++||++|+.|++++.+
T Consensus       534 ~~~g~~~~a~vv~~~~~~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~  602 (625)
T TIGR02188       534 DIKGQAIYAFVTLKDGYEPD-DELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAG  602 (625)
T ss_pred             CCCCeEEEEEEEeCCCCCCC-HHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcC
Confidence            88889999999988775411 0134789999999999999999999999999999999999999998753

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=5.8e-46  Score=358.70  Aligned_cols=308  Identities=33%  Similarity=0.500  Sum_probs=259.0

Q ss_pred             CCCCCCHHHHHHHHHHhcCCCcEEEe--------CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 048729           11 NSTPLTTLGFLERAAAAYTDCPSLVY--------NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQ   82 (330)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~p~~~a~~~--------~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~   82 (330)
                      ...+.|+.++|.+.++.+|+++|+++        .++++||+||.+.+.++|++|++.|+++||+|+++++|++++++++
T Consensus        21 ~~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~  100 (632)
T PRK07529         21 RDLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFAL  100 (632)
T ss_pred             hcCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            35567999999999999999999986        3478999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch-----HHHH------------------------------
Q 048729           83 FGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT-----YLLL------------------------------  127 (330)
Q Consensus        83 la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~-----~~~~------------------------------  127 (330)
                      |||+++| +++|+++.++++.+.++++..+++++++...+.     ..+.                              
T Consensus       101 lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (632)
T PRK07529        101 WGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVP  179 (632)
T ss_pred             HHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCccccccccccccc
Confidence            9999999 568999999999999999999999999864221     0000                              


Q ss_pred             --------------HHh-----------cc-Cc-----------------------------------------------
Q 048729          128 --------------EAL-----------SL-FP-----------------------------------------------  134 (330)
Q Consensus       128 --------------~~~-----------~~-~~-----------------------------------------------  134 (330)
                                    ...           .. ..                                               
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~  259 (632)
T PRK07529        180 LIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFC  259 (632)
T ss_pred             ccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence                          000           00 00                                               


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       260 ~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~slr~v~  339 (632)
T PRK07529        260 GLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDGHDISSLRYAL  339 (632)
T ss_pred             ecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccCCCccceEEEE
Confidence                                                                                            


Q ss_pred             ---------hH-------------------------------HHHhhccCCcccCceeEEEe--CCCCC---cccCCCCc
Q 048729          135 ---------QR-------------------------------ARLKARQGVKTVGLAEVDVV--NPETG---ESVKRDGV  169 (330)
Q Consensus       135 ---------~~-------------------------------~~~~~~~G~~~~g~te~~i~--d~~~g---~~~~~~~~  169 (330)
                               ..                               .....++|.|+++. +++++  |+ +|   ++++.+  
T Consensus       340 ~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~-~v~i~~~d~-~g~~~~~~~~g--  415 (632)
T PRK07529        340 CGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ-RVRVVILDD-AGRYLRDCAVD--  415 (632)
T ss_pred             EcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCccccccCCCcccccCCc-eEEEEEcCC-CCcccccCCCC--
Confidence                     00                               01123345555554 56653  44 55   677777  


Q ss_pred             eecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcc
Q 048729          170 SLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVN  249 (330)
Q Consensus       170 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~  249 (330)
                      +.|||+++|++++.||++++. +...+..+|||+|||+|++|++|.+++.||.||+||++|++|+|.+||+.|.+||+|.
T Consensus       416 ~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~  494 (632)
T PRK07529        416 EVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVA  494 (632)
T ss_pred             CceEEEEECCCccccccCCcc-ccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCee
Confidence            889999999999999998654 4455545899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCC-CCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          250 EAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLP-RYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       250 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +++|++.+++..++.++++|++.++..    .+.+++.++++++++ .+.+|..|+++++||+|++||++|++|++.+..
T Consensus       495 ~a~vvg~~d~~~ge~~~a~v~l~~~~~----~~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~~  570 (632)
T PRK07529        495 LAAAVGRPDAHAGELPVAYVQLKPGAS----ATEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDAIR  570 (632)
T ss_pred             EEEEEeccCCCCCceeEEEEEEcCCCC----CCHHHHHHHHHHhcchhccCCcEEEEecCCCCCCCCcccHHHHHHHHHH
Confidence            999999999888899999999988765    677899999999986 578999999999999999999999999998753

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=8e-46  Score=352.04  Aligned_cols=310  Identities=30%  Similarity=0.447  Sum_probs=268.3

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcC
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG   89 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G   89 (330)
                      ...+++.+++.+.++.+|+++|+++.  ++++||.||.+.++++|++|.+.|+++||+|+++++|++++++.++||+++|
T Consensus        20 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G   99 (537)
T PLN02246         20 PNHLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRG   99 (537)
T ss_pred             CCCCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcC
Confidence            33568999999999999999999985  4789999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh--------------------------c-------cC-c-
Q 048729           90 AILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL--------------------------S-------LF-P-  134 (330)
Q Consensus        90 ~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~--------------------------~-------~~-~-  134 (330)
                      ++++|+++.++.+++..+++..++++++++......+....                          .       .. + 
T Consensus       100 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (537)
T PLN02246        100 AVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADENELPEVEISPD  179 (537)
T ss_pred             EEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCCCCceeHHHHhcCCCCCCCCCCCCcc
Confidence            99999999999999999999999999988654333221100                          0       00 0 


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       180 ~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~  259 (537)
T PLN02246        180 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKF  259 (537)
T ss_pred             CEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCC
Confidence                                                                                            


Q ss_pred             ------------------------------------------------------hHH-----------------------
Q 048729          135 ------------------------------------------------------QRA-----------------------  137 (330)
Q Consensus       135 ------------------------------------------------------~~~-----------------------  137 (330)
                                                                            ...                       
T Consensus       260 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  339 (537)
T PLN02246        260 EIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPV  339 (537)
T ss_pred             CHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcc
Confidence                                                                  000                       


Q ss_pred             -------------HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEe
Q 048729          138 -------------RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT  204 (330)
Q Consensus       138 -------------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~T  204 (330)
                                   ....++|.++.|. +++++|++++++++.+  +.|||+++|+.++.||+++++.+.+.+..+|||+|
T Consensus       340 ~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~T  416 (537)
T PLN02246        340 LAMCLAFAKEPFPVKSGSCGTVVRNA-ELKIVDPETGASLPRN--QPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHT  416 (537)
T ss_pred             cccccccCCCCccccCCccccccCCc-EEEEecCCCCCcCCCC--CceEEEEECCchhccccCCchhhhhcccCCCCeee
Confidence                         0012345555564 6677776578888888  88999999999999999999999888877899999


Q ss_pred             CceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHH
Q 048729          205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEK  284 (330)
Q Consensus       205 GD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  284 (330)
                      ||+++++++|.++++||.||++|++|.+|+|.+||+.+.++|+|.+++|++..+...++.++++++..++..    .+.+
T Consensus       417 GD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----~~~~  492 (537)
T PLN02246        417 GDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSE----ITED  492 (537)
T ss_pred             cceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCC----CCHH
Confidence            999999999999999999999999999999999999999999999999999988877888889888776654    5678


Q ss_pred             HHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          285 EIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       285 ~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++++.++++++.++.|..++++++||+|++||++|++|++++.+
T Consensus       493 ~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~  536 (537)
T PLN02246        493 EIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA  536 (537)
T ss_pred             HHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            99999999999999999999999999999999999999998753

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=3.7e-46  Score=360.16  Aligned_cols=311  Identities=22%  Similarity=0.291  Sum_probs=260.7

Q ss_pred             CCH-HHHHHHHHHhcCCCcEEEe------CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729           15 LTT-LGFLERAAAAYTDCPSLVY------NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPM   87 (330)
Q Consensus        15 ~~~-~~~l~~~~~~~p~~~a~~~------~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~   87 (330)
                      .|+ .++|.+.+..+|+++|+++      .++++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus        51 ~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~  130 (628)
T TIGR02316        51 TNLCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACAR  130 (628)
T ss_pred             eeHHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            344 4677778888999999997      236899999999999999999999999999999999999999999999999


Q ss_pred             cCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch---------HHHH-------------------------------
Q 048729           88 SGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT---------YLLL-------------------------------  127 (330)
Q Consensus        88 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~-------------------------------  127 (330)
                      +|++++|+++.++++++.++++..++++++++....         ..+.                               
T Consensus       131 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  210 (628)
T TIGR02316       131 IGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDV  210 (628)
T ss_pred             hCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccc
Confidence            999999999999999999999999999999864210         0000                               


Q ss_pred             ------HH--hcc-----Cc------------------------------------------------------------
Q 048729          128 ------EA--LSL-----FP------------------------------------------------------------  134 (330)
Q Consensus       128 ------~~--~~~-----~~------------------------------------------------------------  134 (330)
                            ..  ...     ..                                                            
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~  290 (628)
T TIGR02316       211 DYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHS  290 (628)
T ss_pred             cHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhh
Confidence                  00  000     00                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       291 ~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~  370 (628)
T TIGR02316       291 YIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPT  370 (628)
T ss_pred             HHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHH
Confidence                                                                                            


Q ss_pred             -hH--------------------------------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecC--
Q 048729          135 -QR--------------------------------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGG--  179 (330)
Q Consensus       135 -~~--------------------------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~--  179 (330)
                       ..                                ....++.|.|++|. +++|+|+++|++++.+  +.|||+++||  
T Consensus       371 ~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~-~v~i~d~~~g~~~~~g--~~Gel~v~gp~~  447 (628)
T TIGR02316       371 AHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGY-HLRVLDEATGRPCGPN--EKGVLTVVPPLP  447 (628)
T ss_pred             HHHHHHHhCCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCc-eEEEEECCCCCCCCCC--CcEEEEEecCCC
Confidence             00                                00113457788886 8999988679999888  8899999998  


Q ss_pred             -cccccccCCchhhhccc---cCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEe
Q 048729          180 -CVTVGYFKDKEATRRCI---SDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA  255 (330)
Q Consensus       180 -~~~~gy~~~~~~~~~~~---~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~  255 (330)
                       +.+.|||++++...+.+   ..++||+|||+|++|+||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++
T Consensus       448 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg  527 (628)
T TIGR02316       448 PGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVG  527 (628)
T ss_pred             ccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEe
Confidence             56789999987766544   23679999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCceeEEEEEecCCcccCC----CCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          256 RPDMFWGEIPCAFVSLKRDLELTK----KPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       256 ~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .+++..++.++++|+++++.....    ....+++++.++++|++|++|+.++++++||+|++||++|+.|++.+.+
T Consensus       528 ~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~  604 (628)
T TIGR02316       528 VHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEG  604 (628)
T ss_pred             eecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcC
Confidence            999988899999999876543110    0235789999999999999999999999999999999999999998754

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-46  Score=349.98  Aligned_cols=301  Identities=23%  Similarity=0.401  Sum_probs=263.8

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN   94 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~   94 (330)
                      |++.++|.++++++|+++|+.+.++++||.||.++++++|++|.+.|. +||+|+++++|+++++.++|||+++|++++|
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~   79 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVP   79 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence            578999999999999999999999999999999999999999998884 8999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH-----------------Hh------ccC----c-------------
Q 048729           95 INTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE-----------------AL------SLF----P-------------  134 (330)
Q Consensus        95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~-----------------~~------~~~----~-------------  134 (330)
                      +++.++++++.++++..++++++++......+..                 ..      ...    .             
T Consensus        80 l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK  159 (487)
T PRK07638         80 LDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEIDEWKRMIEKYLPTYAPIENVQNAPFYMGFTSGSTGKPK  159 (487)
T ss_pred             cCccCCHHHHHHHHHhCCCCEEEEecccccchhhccceEEEehhhhhhhhhccccccccccCCCCcEEEEeCCCCCCCCc
Confidence            9999999999999999999999987632211110                 00      000    0             


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       160 gv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P  239 (487)
T PRK07638        160 AFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVP  239 (487)
T ss_pred             EEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCc
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------hHHHHhhccCCcccCceeE
Q 048729          135 -------------------------------------------------------------QRARLKARQGVKTVGLAEV  153 (330)
Q Consensus       135 -------------------------------------------------------------~~~~~~~~~G~~~~g~te~  153 (330)
                                                                                   .......+.|.|++|. ++
T Consensus       240 ~~~~~l~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~-~~  318 (487)
T PRK07638        240 TMLESLYKENRVIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNV-QV  318 (487)
T ss_pred             HHHHHHHhCcCcCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCc-EE
Confidence                                                                         0001123567788885 89


Q ss_pred             EEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeec
Q 048729          154 DVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENI  233 (330)
Q Consensus       154 ~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v  233 (330)
                      +|+|+ +|.+++.+  +.|||+++|++++.||++++..+...+. +|||+|||++++|++|++++.||.+|+||++|.+|
T Consensus       319 ~i~d~-~g~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v  394 (487)
T PRK07638        319 RICNE-AGEEVQKG--EIGTVYVKSPQFFMGYIIGGVLARELNA-DGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINI  394 (487)
T ss_pred             EEECC-CCCCCCCC--CCeEEEEecccceeeecCCHHHHhhhcc-CCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEE
Confidence            99998 89999988  8899999999999999999987766555 89999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCC
Q 048729          234 CSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTS  313 (330)
Q Consensus       234 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~  313 (330)
                      +|.+||+.+.++|+|.+++|++..++..++.+.+++..    .    ...+++.+.++++++++++|..+++++++|+|+
T Consensus       395 ~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~----~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~  466 (487)
T PRK07638        395 FPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----S----ATKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTN  466 (487)
T ss_pred             CHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----C----CCHHHHHHHHHHHhhcccCCcEEEEecccCCCC
Confidence            99999999999999999999999988778888887763    1    567899999999999999999999999999999


Q ss_pred             CCcccHHHHHHHhhhc
Q 048729          314 TGKIQKYLLREFAKSV  329 (330)
Q Consensus       314 ~GKv~r~~l~~~~~~~  329 (330)
                      +||++|++|++++.+.
T Consensus       467 ~GKv~r~~L~~~~~~~  482 (487)
T PRK07638        467 SGKIARMEAKSWIENQ  482 (487)
T ss_pred             cccccHHHHHHHHhcc
Confidence            9999999999998753

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=3.8e-46  Score=355.80  Aligned_cols=307  Identities=27%  Similarity=0.402  Sum_probs=261.5

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeCC--eeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHhhhcCc
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYNN--TTYTWSETHRRCLQVASSLSS-VGIQRGHVVSVVAPNVPSMYELQFGVPMSGA   90 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~~--~~~T~~el~~~~~~~a~~L~~-~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~   90 (330)
                      ..++.+.+... +.+|+++|+++..  .++||+||.+++.++|++|.+ .|+++||+|+++++|+.++++.+|||+++|+
T Consensus        39 ~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~  117 (560)
T PLN02574         39 NLDAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGG  117 (560)
T ss_pred             CCCHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCe
Confidence            34555555544 6799999999854  479999999999999999998 9999999999999999999999999999999


Q ss_pred             EEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH--------------------------h----cc-----Cc-
Q 048729           91 ILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA--------------------------L----SL-----FP-  134 (330)
Q Consensus        91 ~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~--------------------------~----~~-----~~-  134 (330)
                      +++|+++.++.+++.++++..+++++++++.....+...                          .    ..     .. 
T Consensus       118 v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (560)
T PLN02574        118 IVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVPKPVIKQ  197 (560)
T ss_pred             EEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCcEEecCcccccccCccCcccHHHHhhcCCcccccCCCCc
Confidence            999999999999999999999999998865432221100                          0    00     00 


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       198 ~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  277 (560)
T PLN02574        198 DDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMR  277 (560)
T ss_pred             CCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEec
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------h----HH----------------
Q 048729          135 ---------------------------------------------------------Q----RA----------------  137 (330)
Q Consensus       135 ---------------------------------------------------------~----~~----------------  137 (330)
                                                                               .    ..                
T Consensus       278 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~  357 (560)
T PLN02574        278 RFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTES  357 (560)
T ss_pred             CCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEeccccccc
Confidence                                                                     0    00                


Q ss_pred             -------------HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEe
Q 048729          138 -------------RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT  204 (330)
Q Consensus       138 -------------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~T  204 (330)
                                   ....+.|.+++|. +++|+|+++|++++.+  +.|||+++|++++.||+++++.+.+.|..+|||+|
T Consensus       358 ~~~~~~~~~~~~~~~~~~vG~~~~~~-~v~i~d~~~g~~~~~g--~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~T  434 (560)
T PLN02574        358 TAVGTRGFNTEKLSKYSSVGLLAPNM-QAKVVDWSTGCLLPPG--NCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRT  434 (560)
T ss_pred             CceeecCCCccccCCCCceeeeCCCc-EEEEEeCCCCcCCCCC--CCeEEEEECcchhhhhcCChhHhhhhccCCCCccc
Confidence                         0012345555664 7778886688999888  88999999999999999999999888877999999


Q ss_pred             CceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHH
Q 048729          205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEK  284 (330)
Q Consensus       205 GD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  284 (330)
                      ||+|++|++|.+++.||.+|+||++|++|++.+||+.|.+||+|.+++|++.+++..++.++++++..++..    .+.+
T Consensus       435 GDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~----~~~~  510 (560)
T PLN02574        435 GDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGST----LSQE  510 (560)
T ss_pred             ceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCC----CCHH
Confidence            999999999999999999999999999999999999999999999999999998887888889988776544    5678


Q ss_pred             HHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          285 EIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       285 ~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++.+.++++|++|+.|..+.++++||+|++||++|+.|++++.+
T Consensus       511 ~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~  554 (560)
T PLN02574        511 AVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTN  554 (560)
T ss_pred             HHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhh
Confidence            99999999999999999999999999999999999999998854

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-45  Score=351.51  Aligned_cols=317  Identities=29%  Similarity=0.433  Sum_probs=273.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHh
Q 048729            7 PNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSV-GIQRGHVVSVVAPNVPSMYELQFGV   85 (330)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~-g~~~gd~V~~~~~~~~~~~~~~la~   85 (330)
                      |...+.+..|+.++|.+.+..+|+++|+++.++++||+||.+++.++|.+|.+. |+++||+|+++++|++++++.++||
T Consensus         2 ~~~~~~~~~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~   81 (546)
T PRK08314          2 PKSLTLPETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAI   81 (546)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHH
Confidence            456677888999999999999999999999999999999999999999999988 9999999999999999999999999


Q ss_pred             hhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh-----------------------------------
Q 048729           86 PMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL-----------------------------------  130 (330)
Q Consensus        86 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-----------------------------------  130 (330)
                      +++|++++|+++.++.+++.++++..++++++++......+....                                   
T Consensus        82 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (546)
T PRK08314         82 LRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPL  161 (546)
T ss_pred             HHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCccccccccccc
Confidence            999999999999999999999999999999998765433221100                                   


Q ss_pred             ---------------c-------------cCc------------------------------------------------
Q 048729          131 ---------------S-------------LFP------------------------------------------------  134 (330)
Q Consensus       131 ---------------~-------------~~~------------------------------------------------  134 (330)
                                     .             ...                                                
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~  241 (546)
T PRK08314        162 QALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLF  241 (546)
T ss_pred             ccccccccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCch
Confidence                           0             000                                                


Q ss_pred             -------------------------------------------------------------------------------h
Q 048729          135 -------------------------------------------------------------------------------Q  135 (330)
Q Consensus       135 -------------------------------------------------------------------------------~  135 (330)
                                                                                                     .
T Consensus       242 ~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~  321 (546)
T PRK08314        242 HVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAV  321 (546)
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHH
Confidence                                                                                           0


Q ss_pred             HHH------------------------------HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccc
Q 048729          136 RAR------------------------------LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGY  185 (330)
Q Consensus       136 ~~~------------------------------~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy  185 (330)
                      ...                              ...+.|.|++|. +++++|++++.+++.+  +.|||+++|++++.||
T Consensus       322 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~-~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gY  398 (546)
T PRK08314        322 AERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGV-DARVIDPETLEELPPG--EVGEIVVHGPQVFKGY  398 (546)
T ss_pred             HHHHHHHcCCcEEecccccccccceecCCCcCCCCCccCcccCCe-EEEEEeCCCCcCCCCC--CceEEEEECCchhccc
Confidence            000                              012345666675 7788887688888888  7899999999999999


Q ss_pred             cCCchhhhcccc---CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCC
Q 048729          186 FKDKEATRRCIS---DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG  262 (330)
Q Consensus       186 ~~~~~~~~~~~~---~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~  262 (330)
                      +++++.+.+.|.   .++||+|||+|+++++|.+++.||.||++|++|.+|+|.+||+.+.++|+|.+++|++.++...+
T Consensus       399 ~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~  478 (546)
T PRK08314        399 WNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRG  478 (546)
T ss_pred             cCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccC
Confidence            999988877763   23599999999999999999999999999999999999999999999999999999999988778


Q ss_pred             ceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       263 ~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +.++++++..++....  .+.+++.+.++++|+++++|..++++++||+|++||++|++|++..+.
T Consensus       479 ~~~~a~v~~~~~~~~~--~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~~  542 (546)
T PRK08314        479 ETVKAVVVLRPEARGK--TTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKA  542 (546)
T ss_pred             ceeEEEEEECCCCCCC--CCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHhh
Confidence            8999999887764311  456899999999999999999999999999999999999999987654

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.1e-46  Score=351.47  Aligned_cols=299  Identities=26%  Similarity=0.371  Sum_probs=260.2

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      +.++.++|.+.++.+||++|+++.++++||.||.+.++++|++|.+.|+++||+|+++++|++++++.++||+++|++++
T Consensus        42 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  121 (537)
T PRK13382         42 GMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL  121 (537)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH-----------------------------hc-c---Cc------
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA-----------------------------LS-L---FP------  134 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----------------------------~~-~---~~------  134 (330)
                      |+++.++.+++.++++..++++++++......+...                             .. .   ..      
T Consensus       122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  201 (537)
T PRK13382        122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHAGQRPEPTGRKGRVI  201 (537)
T ss_pred             ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhccCcCCCCCCCCCCeEE
Confidence            999999999999999999999999875433221110                             00 0   00      


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       202 l~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~  281 (537)
T PRK13382        202 LLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDLID  281 (537)
T ss_pred             EECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCCcCHHHHHHHHH
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------------------------------hHH
Q 048729          135 -----------------------------------------------------------------------------QRA  137 (330)
Q Consensus       135 -----------------------------------------------------------------------------~~~  137 (330)
                                                                                                   ...
T Consensus       282 ~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~  361 (537)
T PRK13382        282 RHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLR  361 (537)
T ss_pred             HhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhc
Confidence                                                                                         000


Q ss_pred             HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEE
Q 048729          138 RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVE  217 (330)
Q Consensus       138 ~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~  217 (330)
                      ....++|.|+.|. +++++|+ ++++++.+  +.|||+++|++++.||+  ++.+. .+. +|||+|||++++|++|+++
T Consensus       362 ~~~~~vG~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~~~~gY~--~~~~~-~~~-~g~~~TGDl~~~~~~g~l~  433 (537)
T PRK13382        362 AAPDTAGRPAEGT-EIRILDQ-DFREVPTG--EVGTIFVRNDTQFDGYT--SGSTK-DFH-DGFMASGDVGYLDENGRLF  433 (537)
T ss_pred             cCCCCccccCcCc-EEEEECC-CCCCCCCC--CeeEEEEEcCCcccCcc--ccchh-hcc-CCCEeeCceEEEeCCCcEE
Confidence            1123466677775 7888888 78888888  88999999999999998  44443 344 7999999999999999999


Q ss_pred             EEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC
Q 048729          218 IKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY  297 (330)
Q Consensus       218 ~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~  297 (330)
                      +.||.||+||.+|++|++.+||+.|.++|+|.+++|++.+++..++.+.+++++.++..    ...+++++.++++|+.+
T Consensus       434 ~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~----~~~~~l~~~l~~~l~~~  509 (537)
T PRK13382        434 VVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGAS----ATPETLKQHVRDNLANY  509 (537)
T ss_pred             EeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCC----CCHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999998877889999998876654    66789999999999999


Q ss_pred             CCCceEEEccCCCCCCCCcccHHHHHH
Q 048729          298 MVPRKVVFSEELPKTSTGKIQKYLLRE  324 (330)
Q Consensus       298 ~~p~~~~~v~~lP~t~~GKv~r~~l~~  324 (330)
                      .+|..+++++++|+|++||++|++|++
T Consensus       510 ~~P~~i~~v~~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        510 KVPRDIVVLDELPRGATGKILRRELQA  536 (537)
T ss_pred             CCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence            999999999999999999999999874

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-45  Score=357.47  Aligned_cols=306  Identities=25%  Similarity=0.366  Sum_probs=259.2

Q ss_pred             HHHHHHHHHhcCCCcEEEeCC------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           18 LGFLERAAAAYTDCPSLVYNN------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        18 ~~~l~~~~~~~p~~~a~~~~~------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      .+.|.+.++.+|+++|+++.+      +++||+||.+.+.++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus        70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav  149 (637)
T PRK00174         70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV  149 (637)
T ss_pred             HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence            456777888899999999643      47999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccch---------HHHH-----------------------------------
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHT---------YLLL-----------------------------------  127 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~-----------------------------------  127 (330)
                      ++|+++.++++++.++++..+++++++++...         ..+.                                   
T Consensus       150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (637)
T PRK00174        150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHEL  229 (637)
T ss_pred             EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCcccHHHH
Confidence            99999999999999999999999999865321         0000                                   


Q ss_pred             -HHh-cc-----Cc------------------------------------------------------------------
Q 048729          128 -EAL-SL-----FP------------------------------------------------------------------  134 (330)
Q Consensus       128 -~~~-~~-----~~------------------------------------------------------------------  134 (330)
                       ... ..     ..                                                                  
T Consensus       230 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  309 (637)
T PRK00174        230 VAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGP  309 (637)
T ss_pred             HhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHH
Confidence             000 00     00                                                                  


Q ss_pred             ---------------------------------------------------------------------------h--HH
Q 048729          135 ---------------------------------------------------------------------------Q--RA  137 (330)
Q Consensus       135 ---------------------------------------------------------------------------~--~~  137 (330)
                                                                                                 .  ..
T Consensus       310 l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~  389 (637)
T PRK00174        310 LANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYK  389 (637)
T ss_pred             HHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHH
Confidence                                                                                       0  00


Q ss_pred             H-------------------------------HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEec--Cccccc
Q 048729          138 R-------------------------------LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRG--GCVTVG  184 (330)
Q Consensus       138 ~-------------------------------~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~--~~~~~g  184 (330)
                      .                               ...++|.|++|+ +++|+|+ +|++++.+  +.|||+++|  ++++.|
T Consensus       390 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~-~~~i~d~-~g~~~~~g--~~Gel~v~g~~p~~~~g  465 (637)
T PRK00174        390 VVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGI-QPAVVDE-EGNPLEGG--EGGNLVIKDPWPGMMRT  465 (637)
T ss_pred             HhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCc-eEEEECC-CCCCCCCC--CcEEEEEcCCCCccccc
Confidence            0                               012467777885 8889997 88999887  889999999  689999


Q ss_pred             ccCCchhhhccc--cCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCC
Q 048729          185 YFKDKEATRRCI--SDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG  262 (330)
Q Consensus       185 y~~~~~~~~~~~--~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~  262 (330)
                      ||++++.+.+.+  ..+|||+|||++++|++|+++++||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..+
T Consensus       466 y~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g  545 (637)
T PRK00174        466 IYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKG  545 (637)
T ss_pred             ccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCC
Confidence            999998776655  237899999999999999999999999999999999999999999999999999999999998888


Q ss_pred             ceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       263 ~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +.+++++++.++.... ....+++.+.++++|+.++.|..++++++||+|++||++|+.|++.+.+
T Consensus       546 ~~~~a~vv~~~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~  610 (637)
T PRK00174        546 QGIYAFVTLKGGEEPS-DELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEG  610 (637)
T ss_pred             eEEEEEEEECCCCCCC-HHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence            9999999988765310 0125789999999999999999999999999999999999999998643

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.9e-45  Score=347.07  Aligned_cols=310  Identities=35%  Similarity=0.551  Sum_probs=274.8

Q ss_pred             CCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc
Q 048729           11 NSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA   90 (330)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~   90 (330)
                      .....++.++|.+.++.+|+++|+++.++.+||.||.+.+.++|+.|.+.|+++||+|+++++|+.++++.++||+++|+
T Consensus         7 ~~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~   86 (523)
T PRK08316          7 RARRQTIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGA   86 (523)
T ss_pred             cccCCCHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence            33467899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc---------------------------------c---C-
Q 048729           91 ILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS---------------------------------L---F-  133 (330)
Q Consensus        91 ~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~---------------------------------~---~-  133 (330)
                      +++|+++.++.+.+.++++..++++++++......+.....                                 .   . 
T Consensus        87 ~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (523)
T PRK08316         87 VHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAGSVAEPDV  166 (523)
T ss_pred             EEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHHHHhcCCCccCcc
Confidence            99999999999999999999999999988765443321100                                 0   0 


Q ss_pred             c-------------------------------------------------------------------------------
Q 048729          134 P-------------------------------------------------------------------------------  134 (330)
Q Consensus       134 ~-------------------------------------------------------------------------------  134 (330)
                      .                                                                               
T Consensus       167 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~  246 (523)
T PRK08316        167 ELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDA  246 (523)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecC
Confidence            0                                                                               


Q ss_pred             ----------------------------------------------------------h-HH------------------
Q 048729          135 ----------------------------------------------------------Q-RA------------------  137 (330)
Q Consensus       135 ----------------------------------------------------------~-~~------------------  137 (330)
                                                                                . ..                  
T Consensus       247 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  326 (523)
T PRK08316        247 PDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAP  326 (523)
T ss_pred             CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCc
Confidence                                                                      0 00                  


Q ss_pred             -----------HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCc
Q 048729          138 -----------RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGD  206 (330)
Q Consensus       138 -----------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD  206 (330)
                                 ....+.|.+++|. +++|+|+ +|++++.+  +.|||+++|+.++.||+++++.+.+.|. +|||+|||
T Consensus       327 ~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~g--~~Gei~v~~~~~~~~y~~~~~~~~~~~~-~~~~~TGD  401 (523)
T PRK08316        327 LATVLGPEEHLRRPGSAGRPVLNV-ETRVVDD-DGNDVAPG--EVGEIVHRSPQLMLGYWDDPEKTAEAFR-GGWFHSGD  401 (523)
T ss_pred             cccccCccccccccCCcccCCCCc-EEEEEcC-CCCCCCCC--CcceEEEECCchhhhhcCCHHHHHHHhh-CCCeeccc
Confidence                       1123456777775 7888887 78888888  8899999999999999999998888886 89999999


Q ss_pred             eEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHH
Q 048729          207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEI  286 (330)
Q Consensus       207 ~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  286 (330)
                      +|+++++|.+++.||.||++|++|++|+|.+||+.+.++++|.++++++..++..++.++++++..++..    ...+++
T Consensus       402 l~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l  477 (523)
T PRK08316        402 LGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGAT----VTEDEL  477 (523)
T ss_pred             eEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCC----CCHHHH
Confidence            9999999999999999999999999999999999999999999999999998888889999999887654    567899


Q ss_pred             HHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          287 IEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       287 ~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      .+.++++++++++|..+++++++|+|++||++|++|+++|++.
T Consensus       478 ~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~  520 (523)
T PRK08316        478 IAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGA  520 (523)
T ss_pred             HHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999865

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-45  Score=347.39  Aligned_cols=311  Identities=28%  Similarity=0.496  Sum_probs=270.5

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcC
Q 048729           10 ANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG   89 (330)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G   89 (330)
                      ....++|+.++|.+.+..+|+++|+++.++++||+||.+.+.++|+.|.+.|+++||+|++++++++++++.++||+++|
T Consensus         2 ~~~~~~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G   81 (528)
T PRK07470          2 MSRRVMNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLG   81 (528)
T ss_pred             CcccCCCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCC
Confidence            35568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh------------------------------c-----cCc
Q 048729           90 AILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL------------------------------S-----LFP  134 (330)
Q Consensus        90 ~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~------------------------------~-----~~~  134 (330)
                      ++++++++.++.+.+.++++..+++.+++++.....+....                              .     ...
T Consensus        82 ~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (528)
T PRK07470         82 AVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVD  161 (528)
T ss_pred             eEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhcCCCCCCCcccCC
Confidence            99999999999999999999999999998765322111000                              0     000


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       162 ~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~  241 (528)
T PRK07470        162 HDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLCQVARGAATVLLPSERF  241 (528)
T ss_pred             CCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHHHHhcCceEEEecccCc
Confidence                                                                                            


Q ss_pred             ------------------------------------------------------hHHH----------------------
Q 048729          135 ------------------------------------------------------QRAR----------------------  138 (330)
Q Consensus       135 ------------------------------------------------------~~~~----------------------  138 (330)
                                                                            ....                      
T Consensus       242 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~  321 (528)
T PRK07470        242 DPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNI  321 (528)
T ss_pred             CHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCce
Confidence                                                                  0000                      


Q ss_pred             ----------------HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeE
Q 048729          139 ----------------LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF  202 (330)
Q Consensus       139 ----------------~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~  202 (330)
                                      ...++|.++.|. +++++|+ +|++++.+  +.|||+++|+.++.||+++++.+...|. +|||
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~G~~~~g~-~~~i~d~-~~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~~~~~-~~~~  396 (528)
T PRK07470        322 TVLPPALHDAEDGPDARIGTCGFERTGM-EVQIQDD-EGRELPPG--ETGEICVIGPAVFAGYYNNPEANAKAFR-DGWF  396 (528)
T ss_pred             eecchhhccccccccceeeccCcccCCc-EEEEECC-CCCCCCCC--CceEEEEeCCccchhhcCCHHHHHhhhc-CCcE
Confidence                            012345556664 6777887 78888888  8899999999999999999998888876 8999


Q ss_pred             EeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCC
Q 048729          203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPT  282 (330)
Q Consensus       203 ~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  282 (330)
                      +|||+++++++|++++.||.||++|++|++|+|.+||+.+.++|+|.+++|++.+++..++.+.++++..++..    .+
T Consensus       397 ~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~  472 (528)
T PRK07470        397 RTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAP----VD  472 (528)
T ss_pred             ecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCC----CC
Confidence            99999999999999999999999999999999999999999999999999999988877777888888776644    56


Q ss_pred             HHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          283 EKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       283 ~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      .+++.++++++|+++.+|..++++++||+|++||++|+.|++++.+.
T Consensus       473 ~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~  519 (528)
T PRK07470        473 EAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEER  519 (528)
T ss_pred             HHHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhc
Confidence            78999999999999999999999999999999999999999988653

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=5.9e-45  Score=347.75  Aligned_cols=318  Identities=36%  Similarity=0.566  Sum_probs=275.9

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHhcCCCcEEEe--CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 048729            5 LLPNSANSTPLTTLGFLERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQ   82 (330)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~~~~~~p~~~a~~~--~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~   82 (330)
                      ..+...+....++.++|.+.++.+|+++|+++  .++++||+||.+++.++|++|.+.|+++||+|+++++|++++++.+
T Consensus         6 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~   85 (559)
T PRK08315          6 RGPTDVPLLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQ   85 (559)
T ss_pred             cCCCcCChhhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            45666777788999999999999999999998  5678999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH--------------------------------------
Q 048729           83 FGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY--------------------------------------  124 (330)
Q Consensus        83 la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~--------------------------------------  124 (330)
                      |||+++|++++|+++.++.+.+..+++..++++++++.....                                      
T Consensus        86 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (559)
T PRK08315         86 FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD  165 (559)
T ss_pred             HHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc
Confidence            999999999999999999999999999999999988653210                                      


Q ss_pred             ----------HHHHH------------hccCc------------------------------------------------
Q 048729          125 ----------LLLEA------------LSLFP------------------------------------------------  134 (330)
Q Consensus       125 ----------~~~~~------------~~~~~------------------------------------------------  134 (330)
                                .+...            .....                                                
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~  245 (559)
T PRK08315        166 EKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCI  245 (559)
T ss_pred             cCCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEE
Confidence                      00000            00000                                                


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       246 ~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~  325 (559)
T PRK08315        246 PVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGS  325 (559)
T ss_pred             ecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCC
Confidence                                                                                            


Q ss_pred             -----h----H------------------------------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEE
Q 048729          135 -----Q----R------------------------------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVV  175 (330)
Q Consensus       135 -----~----~------------------------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~  175 (330)
                           .    .                              .....++|.|++|. +++++|++++++++.+  +.|||+
T Consensus       326 ~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~d~~~~~~~~~g--~~GEl~  402 (559)
T PRK08315        326 PCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHL-EVKIVDPETGETVPRG--EQGELC  402 (559)
T ss_pred             CCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCc-EEEEEcCccCCcCCCC--CceEEE
Confidence                 0    0                              00123556777785 8888998569999888  889999


Q ss_pred             EecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEe
Q 048729          176 LRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA  255 (330)
Q Consensus       176 v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~  255 (330)
                      ++|++++.||+++++.+...+..++||+|||++++|++|.++++||.||++|++|++|++.+||+.+.++|+|.+++|++
T Consensus       403 v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~  482 (559)
T PRK08315        403 TRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVG  482 (559)
T ss_pred             EECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEe
Confidence            99999999999999988888866899999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          256 RPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       256 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      ..++..++.++++|+...+..    ...+++.+.++++++.|++|..+++++++|+|++||++|.+|++++.++
T Consensus       483 ~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~  552 (559)
T PRK08315        483 VPDEKYGEEVCAWIILRPGAT----LTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEE  552 (559)
T ss_pred             cCCCCCCeEEEEEEEeCCCCC----CCHHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhh
Confidence            988877788888888776544    5678999999999999999999999999999999999999999988654

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.2e-45  Score=350.53  Aligned_cols=314  Identities=31%  Similarity=0.454  Sum_probs=271.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhh
Q 048729            7 PNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVP   86 (330)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~   86 (330)
                      +.+.+....++.++|.+.++++|+++|+++.++.+||.||.+.++++|++|.+.|+++||+|+++++|++++++.++||+
T Consensus        24 ~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~  103 (573)
T PRK05605         24 PHDLDYGDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVL  103 (573)
T ss_pred             CcccCCCcCCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            33445556799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHH---------------------------------------
Q 048729           87 MSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLL---------------------------------------  127 (330)
Q Consensus        87 ~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~---------------------------------------  127 (330)
                      ++|++++|+++.++.+.+.+++...+++++++.+.....+.                                       
T Consensus       104 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (573)
T PRK05605        104 RLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKAR  183 (573)
T ss_pred             hcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeecccccccccccccccccccccccc
Confidence            99999999999999999999999999999987443211100                                       


Q ss_pred             --------------H---H---h----cc---Cc----------------------------------------------
Q 048729          128 --------------E---A---L----SL---FP----------------------------------------------  134 (330)
Q Consensus       128 --------------~---~---~----~~---~~----------------------------------------------  134 (330)
                                    .   .   .    ..   ..                                              
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~  263 (573)
T PRK05605        184 AALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPE  263 (573)
T ss_pred             cccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCc
Confidence                          0   0   0    00   00                                              


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       264 ~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~  343 (573)
T PRK05605        264 RVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFS  343 (573)
T ss_pred             EEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEE
Confidence                                                                                            


Q ss_pred             -----------hHH----------------------------HHhhccCCcccCceeEEEeCCCC-CcccCCCCceecEE
Q 048729          135 -----------QRA----------------------------RLKARQGVKTVGLAEVDVVNPET-GESVKRDGVSLGEV  174 (330)
Q Consensus       135 -----------~~~----------------------------~~~~~~G~~~~g~te~~i~d~~~-g~~~~~~~~~~Gel  174 (330)
                                 ...                            ....++|.+++|. +++|+|+++ +.+++.+  +.|||
T Consensus       344 gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~~g--~~Gel  420 (573)
T PRK05605        344 GAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDT-EVRIVDPEDPDETMPDG--EEGEL  420 (573)
T ss_pred             CCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCCCC-EEEEEcCCCCCccCCCC--CeeEE
Confidence                       000                            0012456677774 788888744 5788877  88999


Q ss_pred             EEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEE
Q 048729          175 VLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV  254 (330)
Q Consensus       175 ~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~  254 (330)
                      +++|+.++.||+++++.+...|. +|||+|||++++|++|.+++.||.||++|++|++|+|.+||+.+..++.|.+++++
T Consensus       421 ~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~  499 (573)
T PRK05605        421 LVRGPQVFKGYWNRPEETAKSFL-DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVV  499 (573)
T ss_pred             EEecCchhhhhcCChhHhhhccc-CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEE
Confidence            99999999999999999988887 78999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       255 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +..+...++.+++++++..+..    .+.+++.+.++++|+.+++|..+++++++|+|++||++|++|++++.+
T Consensus       500 ~~~~~~~~~~~~~~vv~~~~~~----~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~  569 (573)
T PRK05605        500 GLPREDGSEEVVAAVVLEPGAA----LDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLE  569 (573)
T ss_pred             eeecccCCeEEEEEEEECCCCC----CCHHHHHHHHHHhCccccCCcEEEEeccCCCCCcccccHHHHHHHHHH
Confidence            9988877788999998877644    677999999999999999999999999999999999999999998854

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=4.2e-45  Score=344.58  Aligned_cols=308  Identities=30%  Similarity=0.458  Sum_probs=269.8

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEe-CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVY-NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~-~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      ..++.+++...+ .+|+++|+.+ .++.+||.||.+.+.++|++|.+.|+++||+|++++++++++++.++|++++|+++
T Consensus         2 ~~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~   80 (504)
T PRK07514          2 NNNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF   80 (504)
T ss_pred             CccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence            468999999999 9999999998 56789999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh-----------------------ccC-------c--------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL-----------------------SLF-------P--------  134 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-----------------------~~~-------~--------  134 (330)
                      +|+++.++.+++..+++..+++++++++.....+....                       ...       .        
T Consensus        81 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  160 (504)
T PRK07514         81 LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLLEAAAAAPDDFETVPRGADDLAA  160 (504)
T ss_pred             EECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCcccHHHhhhhcCcccCcccCCCCCeEE
Confidence            99999999999999999999999998765432211100                       000       0        


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       161 i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~  240 (504)
T PRK07514        161 ILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLAL  240 (504)
T ss_pred             EEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------hHH------------------------------HHh
Q 048729          135 --------------------------------------------QRA------------------------------RLK  140 (330)
Q Consensus       135 --------------------------------------------~~~------------------------------~~~  140 (330)
                                                                  ...                              ...
T Consensus       241 i~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~  320 (504)
T PRK07514        241 MPRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRA  320 (504)
T ss_pred             HHhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccccccC
Confidence                                                        000                              002


Q ss_pred             hccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEe
Q 048729          141 ARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKD  220 (330)
Q Consensus       141 ~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~G  220 (330)
                      .+.|.|++|. +++++|++++++++.+  +.|||+++|++++.||+++++.+.+.|..+|||+|||+++++++|.+++.|
T Consensus       321 ~~~G~~~~~~-~v~i~d~~~~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~G  397 (504)
T PRK07514        321 GTVGFPLPGV-SLRVTDPETGAELPPG--EIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVG  397 (504)
T ss_pred             cccccCCCCc-EEEEEECCCCCCCCCC--CceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEec
Confidence            2455666775 7888886689999888  889999999999999999999998888878999999999999999999999


Q ss_pred             cCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCC
Q 048729          221 RSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVP  300 (330)
Q Consensus       221 R~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  300 (330)
                      |.||++|++|.+|++.+||+.+.++++|.++++++.++...++.++++++...+..    .+.+++.+.++++++++++|
T Consensus       398 R~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~l~~~~~p  473 (504)
T PRK07514        398 RGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAA----LDEAAILAALKGRLARFKQP  473 (504)
T ss_pred             cccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCC----CCHHHHHHHHHhhcccCCCC
Confidence            99999999999999999999999999999999999988777788889888876554    57789999999999999999


Q ss_pred             ceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          301 RKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       301 ~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      ..+++++++|+|++||++|++|++++.++
T Consensus       474 ~~i~~v~~~p~t~~gK~~r~~l~~~~~~~  502 (504)
T PRK07514        474 KRVFFVDELPRNTMGKVQKNLLREQYADL  502 (504)
T ss_pred             cEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence            99999999999999999999999998764

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=6.9e-45  Score=346.32  Aligned_cols=307  Identities=33%  Similarity=0.507  Sum_probs=265.1

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeCC------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHh
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYNN------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGV   85 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~   85 (330)
                      +...++.++|.+.++.+|+++|+++.+      +++||+||.+.++++|++|.+.|+++||+|+++++|++++++++||+
T Consensus        21 ~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~  100 (547)
T PRK13295         21 WHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC  100 (547)
T ss_pred             CcCCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence            345689999999999999999999865      89999999999999999999999999999999999999999999999


Q ss_pred             hhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch-----HHHH------------------------HHh------
Q 048729           86 PMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT-----YLLL------------------------EAL------  130 (330)
Q Consensus        86 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~-----~~~~------------------------~~~------  130 (330)
                      +++|++++|+++.++.+.+.++++..++++++++..+.     ..+.                        ...      
T Consensus       101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (547)
T PRK13295        101 SRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEALLITPAWE  180 (547)
T ss_pred             HhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCCccCHHHHhhCCccc
Confidence            99999999999999999999999999999999865420     0000                        000      


Q ss_pred             --c--------c-Cc-----------------------------------------------------------------
Q 048729          131 --S--------L-FP-----------------------------------------------------------------  134 (330)
Q Consensus       131 --~--------~-~~-----------------------------------------------------------------  134 (330)
                        .        . ..                                                                 
T Consensus       181 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~  260 (547)
T PRK13295        181 QEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMP  260 (547)
T ss_pred             cccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHH
Confidence              0        0 00                                                                 


Q ss_pred             -------------------------------------------------------------------h------------
Q 048729          135 -------------------------------------------------------------------Q------------  135 (330)
Q Consensus       135 -------------------------------------------------------------------~------------  135 (330)
                                                                                         .            
T Consensus       261 l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~  340 (547)
T PRK13295        261 VMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKI  340 (547)
T ss_pred             HHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHhCCCe
Confidence                                                                               0            


Q ss_pred             --------------------HHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcc
Q 048729          136 --------------------RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC  195 (330)
Q Consensus       136 --------------------~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~  195 (330)
                                          ......+.|.|++|. +++|+|+ ++++++.+  +.|||+++|++++.||+++++.+...
T Consensus       341 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~-~v~i~d~-~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~  416 (547)
T PRK13295        341 VSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGV-EVRVVDA-DGAPLPAG--QIGRLQVRGCSNFGGYLKRPQLNGTD  416 (547)
T ss_pred             EEeccCCCCCCeeeccCCCcchhccCccccccCCc-EEEEECC-CCCCCCCC--CCCeEEEEcCcccccccCCccccccC
Confidence                                001123456666775 7888887 78888888  88999999999999999999877665


Q ss_pred             ccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCc
Q 048729          196 ISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDL  275 (330)
Q Consensus       196 ~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  275 (330)
                        .+|||+|||+++++++|++++.||.+|++|++|++|+|.+||+.|.++++|.+++|++..++..++++++++++..+.
T Consensus       417 --~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~  494 (547)
T PRK13295        417 --ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQ  494 (547)
T ss_pred             --CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCC
Confidence              378999999999999999999999999999999999999999999999999999999999887788999999887764


Q ss_pred             ccCCCCCHHHHHHHHHh-cCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          276 ELTKKPTEKEIIEYCRA-RLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       276 ~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .    ...+++.+.+++ +++++++|..++++++||+|++||++|++|++++.+
T Consensus       495 ~----~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~  544 (547)
T PRK13295        495 S----LDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRG  544 (547)
T ss_pred             C----CCHHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHhc
Confidence            3    566889999986 799999999999999999999999999999998754

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=3.8e-45  Score=343.09  Aligned_cols=303  Identities=32%  Similarity=0.536  Sum_probs=260.7

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN   94 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~   94 (330)
                      +++.++|.+++..+||++|+++.++.+||.||.+++++++++|.+.|+++||+|++++++++++++.++|++++|++++|
T Consensus         2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~   81 (483)
T PRK03640          2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVL   81 (483)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEe
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH--------hcc----------Cc----------------------
Q 048729           95 INTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA--------LSL----------FP----------------------  134 (330)
Q Consensus        95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~--------~~~----------~~----------------------  134 (330)
                      +++.++.+.+..++++.+++.++++..........        ...          ..                      
T Consensus        82 i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~  161 (483)
T PRK03640         82 LNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQ  161 (483)
T ss_pred             cCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhccccHHHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEE
Confidence            99999999999999999999999875433322110        000          00                      


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       162 s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~  241 (483)
T PRK03640        162 TYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQ  241 (483)
T ss_pred             ecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------h-------------------------------HHHHhhccCCcccCceeEEE
Q 048729          135 ----------------------------Q-------------------------------RARLKARQGVKTVGLAEVDV  155 (330)
Q Consensus       135 ----------------------------~-------------------------------~~~~~~~~G~~~~g~te~~i  155 (330)
                                                  .                               ......+.|.|++|. ++++
T Consensus       242 ~l~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~-~~~i  320 (483)
T PRK03640        242 RLLERLGEGTYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPC-ELKI  320 (483)
T ss_pred             HHHhCcCccccCCcceEEEEcCCCCCHHHHHHHHHhCCCeeeeeccCcccccccccCcccccccCCCcccccCCc-EEEE
Confidence                                        0                               000112344555553 5566


Q ss_pred             eCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCH
Q 048729          156 VNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICS  235 (330)
Q Consensus       156 ~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~  235 (330)
                      .++  +.+++.+  +.|||+++|++++.||+++++.+.+.|. +|||+|||+++++++|.+++.||+||++|++|.+|++
T Consensus       321 ~~~--~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~-~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~  395 (483)
T PRK03640        321 EKD--GVVVPPF--EEGEIVVKGPNVTKGYLNREDATRETFQ-DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYP  395 (483)
T ss_pred             ecC--CCcCCCC--CceEEEEECcchhhhhcCCHHHHHHHHh-cCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECH
Confidence            554  3667766  7899999999999999999999888886 8999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCC
Q 048729          236 AEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTG  315 (330)
Q Consensus       236 ~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~G  315 (330)
                      .+||+.+.++++|.++++++..++..+..++++++....      .+.+++.++++++|+++.+|..|++++++|+|++|
T Consensus       396 ~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~g  469 (483)
T PRK03640        396 AEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGE------VTEEELRHFCEEKLAKYKVPKRFYFVEELPRNASG  469 (483)
T ss_pred             HHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCC------CCHHHHHHHHHHhccCCCCCcEEEEeCCCCCCCcc
Confidence            999999999999999999999887767777777764433      67789999999999999999999999999999999


Q ss_pred             cccHHHHHHHhhhc
Q 048729          316 KIQKYLLREFAKSV  329 (330)
Q Consensus       316 Kv~r~~l~~~~~~~  329 (330)
                      |++|++|++++.++
T Consensus       470 K~~r~~l~~~~~~~  483 (483)
T PRK03640        470 KLLRHELKQLVEEM  483 (483)
T ss_pred             ceeHHHHHHHHhhC
Confidence            99999999998763

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.4e-45  Score=345.08  Aligned_cols=305  Identities=38%  Similarity=0.590  Sum_probs=268.2

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      +...++.+.|.+.++.+|+++|+++.++++||.||.+.+.++|+.|.+.|+++||+|+++++|++++++.++||+++|++
T Consensus         2 ~~~~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~   81 (513)
T PRK07656          2 NEWMTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAV   81 (513)
T ss_pred             CccccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH----------------------------------h----cc-
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA----------------------------------L----SL-  132 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~----------------------------------~----~~-  132 (330)
                      ++|+++.++.+.+.++++..+++++++++.........                                  .    .. 
T Consensus        82 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (513)
T PRK07656         82 VVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAP  161 (513)
T ss_pred             EEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcCCCCCCcC
Confidence            99999999999999999999999999876543221100                                  0    00 


Q ss_pred             -Cc-----------------------------------------------------------------------------
Q 048729          133 -FP-----------------------------------------------------------------------------  134 (330)
Q Consensus       133 -~~-----------------------------------------------------------------------------  134 (330)
                       ..                                                                             
T Consensus       162 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~  241 (513)
T PRK07656        162 EVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPV  241 (513)
T ss_pred             CCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCc
Confidence             00                                                                             


Q ss_pred             -------------------------------------------------------hH-----------------------
Q 048729          135 -------------------------------------------------------QR-----------------------  136 (330)
Q Consensus       135 -------------------------------------------------------~~-----------------------  136 (330)
                                                                             ..                       
T Consensus       242 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  321 (513)
T PRK07656        242 FDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASG  321 (513)
T ss_pred             CCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCC
Confidence                                                                   00                       


Q ss_pred             ---------H--HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeC
Q 048729          137 ---------A--RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTG  205 (330)
Q Consensus       137 ---------~--~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TG  205 (330)
                               .  ....++|.+++|. +++++|+ ++++++.+  +.|||+++|+.++.||++++..+...+..+|||+||
T Consensus       322 ~~~~~~~~~~~~~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tG  397 (513)
T PRK07656        322 VTTFNRLDDDRKTVAGTIGTAIAGV-ENKIVNE-LGEEVPVG--EVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTG  397 (513)
T ss_pred             ceeecCccccccccCCCccccCCCc-EEEEECC-CCCCCCCC--CceEEEEEcchhhhhhcCCHHHHhhhhccCCceecc
Confidence                     0  0023466677775 7888887 78888888  789999999999999999999888888778999999


Q ss_pred             ceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHH
Q 048729          206 DIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKE  285 (330)
Q Consensus       206 D~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  285 (330)
                      |+++++++|.++++||.||++|++|.++++.+||+.+.++++|.+++|++..++..++.+.++++..++..    .+.++
T Consensus       398 Dl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~----~~~~~  473 (513)
T PRK07656        398 DLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAE----LTEEE  473 (513)
T ss_pred             ceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCC----CCHHH
Confidence            99999999999999999999999999999999999999999999999999988877888889988876444    67789


Q ss_pred             HHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHH
Q 048729          286 IIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE  324 (330)
Q Consensus       286 l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~  324 (330)
                      +.+.++++|+++.+|..+++++++|+|++||++|++|++
T Consensus       474 l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        474 LIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE  512 (513)
T ss_pred             HHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence            999999999999999999999999999999999999975

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-45  Score=360.22  Aligned_cols=303  Identities=23%  Similarity=0.343  Sum_probs=255.9

Q ss_pred             CCHHHHHHHHHHh--cCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           15 LTTLGFLERAAAA--YTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        15 ~~~~~~l~~~~~~--~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      .|+.++|.+.+..  +||++|+++. +.+||+||.++++++|++|.+.|+++||+|++++++++++++.++||+++|+++
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~   82 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMA   82 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence            3789999998886  7999999874 589999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHH------------HHh---c---------cCc--------------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLL------------EAL---S---------LFP--------------  134 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~------------~~~---~---------~~~--------------  134 (330)
                      +|+++.++.+++.++++..++++++++......+.            ...   .         ...              
T Consensus        83 vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKg  162 (705)
T PRK06060         83 FLANPELHRDDHALAARNTEPALVVTSDALRDRFQPSRVAEAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKA  162 (705)
T ss_pred             EecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcccccchhhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcE
Confidence            99999999999999999999999998654322110            000   0         000              


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       163 V~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~  242 (705)
T PRK06060        163 AIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYG  242 (705)
T ss_pred             EEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEee
Confidence                                                                                            


Q ss_pred             ---------------------------------hH-------------------------------HHHhhccCCcccCc
Q 048729          135 ---------------------------------QR-------------------------------ARLKARQGVKTVGL  150 (330)
Q Consensus       135 ---------------------------------~~-------------------------------~~~~~~~G~~~~g~  150 (330)
                                                       ..                               .....++|.|++|.
T Consensus       243 ~P~~l~~l~~~~~~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~  322 (705)
T PRK06060        243 VPNFFARVIDSCSPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPY  322 (705)
T ss_pred             HHHHHHHHHHhcccccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccCCCc
Confidence                                             00                               00112356666675


Q ss_pred             eeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCC
Q 048729          151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGG  230 (330)
Q Consensus       151 te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G  230 (330)
                       +++++|+ +|++++.+  +.|||+++|++++.||+++++.+.   ..+|||+|||+|+++++|+++++||.||+||++|
T Consensus       323 -~v~i~d~-~g~~~~~g--~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G  395 (705)
T PRK06060        323 -EIRVVAP-DGTTAGPG--VEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGG  395 (705)
T ss_pred             -EEEEECC-CCCCCCCC--CceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEECC
Confidence             7788887 78888888  889999999999999999987643   2479999999999999999999999999999999


Q ss_pred             eecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCC
Q 048729          231 ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELP  310 (330)
Q Consensus       231 ~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP  310 (330)
                      ++|++.+||+.+.++|+|.+++|++..++..++.+.++++...+...+ ....+++.+.++++|+.|++|..|+++++||
T Consensus       396 ~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~-~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP  474 (705)
T PRK06060        396 VNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATID-GSVMRDLHRGLLNRLSAFKVPHRFAVVDRLP  474 (705)
T ss_pred             EEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcC-hHHHHHHHHHHHHhCCCCcCCcEEEEeecCC
Confidence            999999999999999999999999999887778899998876553311 0123578899999999999999999999999


Q ss_pred             CCCCCcccHHHHHHHh
Q 048729          311 KTSTGKIQKYLLREFA  326 (330)
Q Consensus       311 ~t~~GKv~r~~l~~~~  326 (330)
                      +|++||++|++|++.+
T Consensus       475 ~t~~GKidr~~L~~~~  490 (705)
T PRK06060        475 RTPNGKLVRGALRKQS  490 (705)
T ss_pred             CCcchhhHHHHHHhhc
Confidence            9999999999999865

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=5.5e-45  Score=344.81  Aligned_cols=302  Identities=24%  Similarity=0.417  Sum_probs=263.3

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeCC-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhc
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYNN-----TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMS   88 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~~-----~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~   88 (330)
                      ..++.++|.+.++++|+++|+++.+     +.+||.||.+.++++|++|.+.|+++||+|+++++|+++++++++||+++
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~   85 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKI   85 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            4689999999999999999999753     78999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc-------------------------------------
Q 048729           89 GAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS-------------------------------------  131 (330)
Q Consensus        89 G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-------------------------------------  131 (330)
                      |++++++++.++.+.+.++++..+++.+++.+.....+.+...                                     
T Consensus        86 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (517)
T PRK08008         86 GAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPATLC  165 (517)
T ss_pred             CeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCcccc
Confidence            9999999999999999999999999999887654322211000                                     


Q ss_pred             ---cCc--------------------------------------------------------------------------
Q 048729          132 ---LFP--------------------------------------------------------------------------  134 (330)
Q Consensus       132 ---~~~--------------------------------------------------------------------------  134 (330)
                         ...                                                                          
T Consensus       166 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~  245 (517)
T PRK08008        166 YAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVL  245 (517)
T ss_pred             ccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEE
Confidence               000                                                                          


Q ss_pred             -----------------------------h----------------------------HHH-------------------
Q 048729          135 -----------------------------Q----------------------------RAR-------------------  138 (330)
Q Consensus       135 -----------------------------~----------------------------~~~-------------------  138 (330)
                                                   .                            ...                   
T Consensus       246 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  325 (517)
T PRK08008        246 LEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQEKDAFEERFGVRLLTSYGMTETI  325 (517)
T ss_pred             ccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEecCCCHHHHHHHHHHhCCeEEeeccccccc
Confidence                                         0                            000                   


Q ss_pred             ------------HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEec---CcccccccCCchhhhccccCCCeEE
Q 048729          139 ------------LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRG---GCVTVGYFKDKEATRRCISDNGWFY  203 (330)
Q Consensus       139 ------------~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~---~~~~~gy~~~~~~~~~~~~~~g~~~  203 (330)
                                  ...++|.|+.|. +++++|+ +|.+++.+  +.|||+++|   ++++.||+++++.+.+.+..+|||+
T Consensus       326 ~~~~~~~~~~~~~~~~~G~~~~g~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~  401 (517)
T PRK08008        326 VGIIGDRPGDKRRWPSIGRPGFCY-EAEIRDD-HNRPLPAG--EIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLH  401 (517)
T ss_pred             cccccCCccccccCCccccCCCCc-EEEEECC-CCCCCCCC--CcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCee
Confidence                        001345555664 7778887 78888888  889999997   5899999999999998888799999


Q ss_pred             eCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCH
Q 048729          204 TGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTE  283 (330)
Q Consensus       204 TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  283 (330)
                      |||++++|++|.+++.||.||++|++|++|+|.+||+++.+++.|.+++|++..++..++++.+++++..+..    .+.
T Consensus       402 TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~----~~~  477 (517)
T PRK08008        402 TGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGET----LSE  477 (517)
T ss_pred             ccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCC----CCH
Confidence            9999999999999999999999999999999999999999999999999999998877888999999887654    567


Q ss_pred             HHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHH
Q 048729          284 KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR  323 (330)
Q Consensus       284 ~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~  323 (330)
                      +++.++++++++++.+|..+++++++|+|++||++|+.|+
T Consensus       478 ~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        478 EEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK  517 (517)
T ss_pred             HHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence            8999999999999999999999999999999999999874

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.8e-45  Score=347.95  Aligned_cols=302  Identities=19%  Similarity=0.232  Sum_probs=248.1

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeCC-eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYNN-TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA   90 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~-~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~   90 (330)
                      ....++.+.|.+.++++|+++|+.+.. +++||+||.+.++++|++|.+   .+||+|+++++|++++++++|||+++|+
T Consensus        16 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~   92 (539)
T PRK06334         16 RSGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGK   92 (539)
T ss_pred             CcCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCC
Confidence            345789999999999999999998865 799999999999999999986   3899999999999999999999999999


Q ss_pred             EEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH-----------------------------------h-----
Q 048729           91 ILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA-----------------------------------L-----  130 (330)
Q Consensus        91 ~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----------------------------------~-----  130 (330)
                      +++|+++.++.+++.++++..++++++++......+...                                   .     
T Consensus        93 v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (539)
T PRK06334         93 IPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCRIGIYMSIPFEWLM  172 (539)
T ss_pred             eeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhhhhhhhcCCchhhh
Confidence            999999999999999999999999999875433211100                                   0     


Q ss_pred             -----ccCc-----------------------------------------------------------------------
Q 048729          131 -----SLFP-----------------------------------------------------------------------  134 (330)
Q Consensus       131 -----~~~~-----------------------------------------------------------------------  134 (330)
                           ....                                                                       
T Consensus       173 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~  252 (539)
T PRK06334        173 RWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVP  252 (539)
T ss_pred             hcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCe
Confidence                 0000                                                                       


Q ss_pred             --------------------------------------------------------------h----H------------
Q 048729          135 --------------------------------------------------------------Q----R------------  136 (330)
Q Consensus       135 --------------------------------------------------------------~----~------------  136 (330)
                                                                                    .    .            
T Consensus       253 vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~Y  332 (539)
T PRK06334        253 VVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGY  332 (539)
T ss_pred             EEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecc
Confidence                                                                          0    0            


Q ss_pred             ----------------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcc-ccCC
Q 048729          137 ----------------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC-ISDN  199 (330)
Q Consensus       137 ----------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~-~~~~  199 (330)
                                      .....++|.|++|. +++|+|++++.+++.+  +.|||+++|++++.||+++++.+... ...+
T Consensus       333 G~TE~~~~~~~~~~~~~~~~~~vG~p~~g~-~v~i~d~~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~  409 (539)
T PRK06334        333 GTTECSPVITINTVNSPKHESCVGMPIRGM-DVLIVSEETKVPVSSG--ETGLVLTRGTSLFSGYLGEDFGQGFVELGGE  409 (539)
T ss_pred             cccccCceEEeccCCCCCCCCcCceecCCC-EEEEEcCCCCccCCCC--ceEEEEEecCcccccccCCcccccceeeCCc
Confidence                            00112456777775 7888887678889888  88999999999999999998754322 1236


Q ss_pred             CeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcce------EEEEeecCCCCCceeEEEEEecC
Q 048729          200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNE------AAVVARPDMFWGEIPCAFVSLKR  273 (330)
Q Consensus       200 g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~------~~v~~~~~~~~~~~~~~~v~~~~  273 (330)
                      |||+|||+|++|++|++++.||.+|+||++|++|+|.+||+.|.+||+|.+      ++|++.+++  ...++++++  .
T Consensus       410 ~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~--~~~~~~~~~--~  485 (539)
T PRK06334        410 TWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGE--KVRLCLFTT--F  485 (539)
T ss_pred             eeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCC--ceEEEEEEe--c
Confidence            899999999999999999999999999999999999999999999999998      677776643  223444443  2


Q ss_pred             CcccCCCCCHHHHHHHHHhc-CCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          274 DLELTKKPTEKEIIEYCRAR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       274 ~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      .      .+.+++.++++++ ++.|++|+.+.++++||+|++||++|++|++++.++
T Consensus       486 ~------~~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  536 (539)
T PRK06334        486 P------TSISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALAKSL  536 (539)
T ss_pred             c------CChHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHHHHHHHh
Confidence            2      3457889999886 789999999999999999999999999999987653

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-44  Score=344.36  Aligned_cols=314  Identities=28%  Similarity=0.408  Sum_probs=264.9

Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhc
Q 048729            9 SANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMS   88 (330)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~   88 (330)
                      .+.....++.++|.+.++.+|+++|+++.++++||.||.+.+.++|++|.+.|+++||+|+++++|++++++.++||+++
T Consensus         4 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~   83 (540)
T PRK06164          4 DAAPRADTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARL   83 (540)
T ss_pred             ccccCCCCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence            34455668999999999999999999998999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch-----HHHHHH-------------h--------------------
Q 048729           89 GAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT-----YLLLEA-------------L--------------------  130 (330)
Q Consensus        89 G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~-----~~~~~~-------------~--------------------  130 (330)
                      |++++|+++..+.+++.++++..+++++++++.+.     ..+...             .                    
T Consensus        84 G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (540)
T PRK06164         84 GATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFA  163 (540)
T ss_pred             CcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCccccccccc
Confidence            99999999999999999999999999999865421     000000             0                    


Q ss_pred             ------------ccC-c---------------------------------------------------------------
Q 048729          131 ------------SLF-P---------------------------------------------------------------  134 (330)
Q Consensus       131 ------------~~~-~---------------------------------------------------------------  134 (330)
                                  ... .                                                               
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~  243 (540)
T PRK06164        164 LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGA  243 (540)
T ss_pred             ccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHH
Confidence                        000 0                                                               


Q ss_pred             -----------------------------------------h-------------------------HHHHhhccCC---
Q 048729          135 -----------------------------------------Q-------------------------RARLKARQGV---  145 (330)
Q Consensus       135 -----------------------------------------~-------------------------~~~~~~~~G~---  145 (330)
                                                               .                         ........|.   
T Consensus       244 l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (540)
T PRK06164        244 LAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERADFPSARLFGFASFAPALGELAALARARGVPLT  323 (540)
T ss_pred             HhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhcccCCCcceeeeeeccCCcchHHHHHHHhhcCCcee
Confidence                                                     0                         0000000011   


Q ss_pred             cccCce------------------------------eEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcc
Q 048729          146 KTVGLA------------------------------EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC  195 (330)
Q Consensus       146 ~~~g~t------------------------------e~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~  195 (330)
                      ..||.|                              +++++|++++.+++.+  +.|||+++|++++.||+++++.+...
T Consensus       324 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~  401 (540)
T PRK06164        324 GLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDG--ESGEIEIRAPSLMRGYLDNPDATARA  401 (540)
T ss_pred             cceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCC--CeeEEEEecccccccccCCchhhhhc
Confidence            113333                              5566676678888877  88999999999999999999999998


Q ss_pred             ccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCc
Q 048729          196 ISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDL  275 (330)
Q Consensus       196 ~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  275 (330)
                      |..+|||+|||+|++|++|.+++.||.+|++|++|++|+|.+||+.+.++|+|.+++|++.... .+..++++++..++.
T Consensus       402 ~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~-~~~~~~~~vv~~~~~  480 (540)
T PRK06164        402 LTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRD-GKTVPVAFVIPTDGA  480 (540)
T ss_pred             ccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCCC-CceeEEEEEEeCCCC
Confidence            8878999999999999999999999999999999999999999999999999999999998743 456788888887665


Q ss_pred             ccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCC---cccHHHHHHHhhhc
Q 048729          276 ELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTG---KIQKYLLREFAKSV  329 (330)
Q Consensus       276 ~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~G---Kv~r~~l~~~~~~~  329 (330)
                      .    ...+++.+.++++++++.+|..+++++++|+|++|   |++|+.|+++++++
T Consensus       481 ~----~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~  533 (540)
T PRK06164        481 S----PDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQAR  533 (540)
T ss_pred             C----CCHHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHh
Confidence            4    67899999999999999999999999999999999   99999999998765

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.8e-45  Score=342.84  Aligned_cols=301  Identities=30%  Similarity=0.448  Sum_probs=258.1

Q ss_pred             HHHHHhcCCCcEEEe--CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCC
Q 048729           22 ERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRL   99 (330)
Q Consensus        22 ~~~~~~~p~~~a~~~--~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~   99 (330)
                      ..++..+||++|+.+  .++++||+||.+.+.++|++|.+.|+++||+|+++++|++++++.+|||+++|++++|+++.+
T Consensus         2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~   81 (488)
T PRK09088          2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL   81 (488)
T ss_pred             chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence            356788999999987  678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCcEEEEcccchHH---------HHHHhcc--------Cc----------------------------
Q 048729          100 DAHTLSVLLQHSESKLVFVDHLHTYL---------LLEALSL--------FP----------------------------  134 (330)
Q Consensus       100 ~~~~l~~~l~~~~~~~i~~~~~~~~~---------~~~~~~~--------~~----------------------------  134 (330)
                      +++.+.++++..++++++++......         +......        ..                            
T Consensus        82 ~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~  161 (488)
T PRK09088         82 SASELDALLQDAEPRLLLGDDAVAAGRTDVEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQ  161 (488)
T ss_pred             CHHHHHHHHHhCCCCEEEEcchhhcccccccchhhhhhhccccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHH
Confidence            99999999999999999986532210         0000000        00                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       162 ~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~  241 (488)
T PRK09088        162 QTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFR  241 (488)
T ss_pred             HHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------hH---H-----------------------------HHhhccCCcccCceeEEEe
Q 048729          135 --------------------------QR---A-----------------------------RLKARQGVKTVGLAEVDVV  156 (330)
Q Consensus       135 --------------------------~~---~-----------------------------~~~~~~G~~~~g~te~~i~  156 (330)
                                                ..   .                             ....++|.+++|. +++|+
T Consensus       242 ~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~-~~~i~  320 (488)
T PRK09088        242 AQPGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTV-QTRVV  320 (488)
T ss_pred             hCcCcCccccccceEEEecCCCCCHHHHHHHHHhCCceeeeecccccccccccCCCcccccccCCccccCCCCc-EEEEE
Confidence                                      00   0                             0112345555664 66777


Q ss_pred             CCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHH
Q 048729          157 NPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSA  236 (330)
Q Consensus       157 d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~  236 (330)
                      |+ ++.+++.+  +.|||+++|++++.||+++++.+.+.+..+|||+|||+|++|++|.+++.||.+|+||++|.+++|.
T Consensus       321 d~-~~~~~~~g--~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~  397 (488)
T PRK09088        321 DD-QGNDCPAG--VPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPA  397 (488)
T ss_pred             CC-CCCCCcCC--CceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHH
Confidence            76 78888777  7899999999999999999998888887789999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCc
Q 048729          237 EVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGK  316 (330)
Q Consensus       237 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GK  316 (330)
                      +||+.|..+|+|.++++++..++..++..++++++.++..    .+.+++.+.++++++++++|..+.++++||+|++||
T Consensus       398 ~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gK  473 (488)
T PRK09088        398 EIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAP----LDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGK  473 (488)
T ss_pred             HHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCC----CCHHHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCc
Confidence            9999999999999999999988776778888888876544    567899999999999999999999999999999999


Q ss_pred             ccHHHHHHHhhhcC
Q 048729          317 IQKYLLREFAKSVS  330 (330)
Q Consensus       317 v~r~~l~~~~~~~~  330 (330)
                      ++|++|++++.+.+
T Consensus       474 i~r~~l~~~~~~~~  487 (488)
T PRK09088        474 LQKARLRDALAAGR  487 (488)
T ss_pred             eeHHHHHHHHHhcC
Confidence            99999999987653

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7e-45  Score=345.37  Aligned_cols=307  Identities=25%  Similarity=0.394  Sum_probs=262.0

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeCC--eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYNN--TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA   90 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~~--~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~   90 (330)
                      ...++.+.|.+.++++|+++|+++.+  +++||+||.++++++|++|.+.|+++||+|+++++|++++++.++||+++|+
T Consensus        14 ~~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~   93 (534)
T PRK05852         14 FGPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADL   93 (534)
T ss_pred             hcccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCc
Confidence            45689999999999999999998754  5799999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHH-----------------------------H---------Hhcc
Q 048729           91 ILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLL-----------------------------E---------ALSL  132 (330)
Q Consensus        91 ~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~-----------------------------~---------~~~~  132 (330)
                      +++++++.++.+.+.++++..++++++++........                             .         ....
T Consensus        94 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (534)
T PRK05852         94 VVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATSTPEG  173 (534)
T ss_pred             EEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccccccCCCccccccCC
Confidence            9999999999999999999999999996542110000                             0         0000


Q ss_pred             ----Cc--------------------------------------------------------------------------
Q 048729          133 ----FP--------------------------------------------------------------------------  134 (330)
Q Consensus       133 ----~~--------------------------------------------------------------------------  134 (330)
                          ..                                                                          
T Consensus       174 ~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~  253 (534)
T PRK05852        174 LRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGR  253 (534)
T ss_pred             CCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcC
Confidence                00                                                                          


Q ss_pred             ---------------------------------------------------------hHHHH------------------
Q 048729          135 ---------------------------------------------------------QRARL------------------  139 (330)
Q Consensus       135 ---------------------------------------------------------~~~~~------------------  139 (330)
                                                                               ....+                  
T Consensus       254 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~  333 (534)
T PRK05852        254 FSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEAT  333 (534)
T ss_pred             cCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccc
Confidence                                                                     00000                  


Q ss_pred             -----------------hhccCCc--ccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCC
Q 048729          140 -----------------KARQGVK--TVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNG  200 (330)
Q Consensus       140 -----------------~~~~G~~--~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g  200 (330)
                                       ..+.|.+  ..|. +++++|+ +|++++.+  +.|||+++|+.++.||+++++.+.+.|. +|
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~-~~~i~d~-~g~~~~~g--~~Gel~v~g~~v~~gY~~~~~~t~~~~~-~g  408 (534)
T PRK05852        334 HQVTTTQIEGIGQTENPVVSTGLVGRSTGA-QIRIVGS-DGLPLPAG--AVGEVWLRGTTVVRGYLGDPTITAANFT-DG  408 (534)
T ss_pred             hhhhcCCccccccccCcccccccCCCCCCC-eEEEECC-CCCCCCCC--CceEEEEecCcccchhcCCcccchhhhc-CC
Confidence                             0011222  3554 6777777 78888887  8899999999999999999999888886 89


Q ss_pred             eEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCC
Q 048729          201 WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKK  280 (330)
Q Consensus       201 ~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  280 (330)
                      ||+|||++++|+||++++.||.+|++|++|.+|+|.+||+++.++|+|.+++|++..++..++.++++++..+...    
T Consensus       409 ~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~----  484 (534)
T PRK05852        409 WLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAP----  484 (534)
T ss_pred             CcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCC----
Confidence            9999999999999999999999999999999999999999999999999999999998877888999988766543    


Q ss_pred             CCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          281 PTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       281 ~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .+.+++.+.++++|+.+.+|..+++++++|+|++||++|++|++++..
T Consensus       485 ~~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        485 PTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             CCHHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhcc
Confidence            577899999999999999999999999999999999999999998853

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.1e-45  Score=352.95  Aligned_cols=307  Identities=20%  Similarity=0.305  Sum_probs=252.7

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeCC-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhc
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYNN-----TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMS   88 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~~-----~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~   88 (330)
                      ..|+.+.+.++  .+|+++|+++.+     +++||+||.+.+.++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus        85 ~~n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~  162 (655)
T PRK03584         85 RLNYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASL  162 (655)
T ss_pred             EeeHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            34666666543  589999999753     68999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch---------HHH---------------------------------
Q 048729           89 GAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT---------YLL---------------------------------  126 (330)
Q Consensus        89 G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~---------------------------------  126 (330)
                      |++++|+++.++++.+.++++..+++++++.+...         ..+                                 
T Consensus       163 Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  242 (655)
T PRK03584        163 GAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALL  242 (655)
T ss_pred             CcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCccc
Confidence            99999999999999999999999999999865321         000                                 


Q ss_pred             -HHHhc-----cC-----c-------------------------------------------------------------
Q 048729          127 -LEALS-----LF-----P-------------------------------------------------------------  134 (330)
Q Consensus       127 -~~~~~-----~~-----~-------------------------------------------------------------  134 (330)
                       .....     ..     .                                                             
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  322 (655)
T PRK03584        243 WEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWNWL  322 (655)
T ss_pred             HHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHHHH
Confidence             00000     00     0                                                             


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       323 ~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~  402 (655)
T PRK03584        323 VSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDW  402 (655)
T ss_pred             HHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHH
Confidence                                                                                            


Q ss_pred             hHHH-----------------------------HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecC--cccc
Q 048729          135 QRAR-----------------------------LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGG--CVTV  183 (330)
Q Consensus       135 ~~~~-----------------------------~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~--~~~~  183 (330)
                      ....                             ..+++|.|++|+ +++|+|+ +|+++ .+  +.|||+++|+  +++.
T Consensus       403 ~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~-~~~ivd~-~g~~~-~g--~~GeL~v~gp~p~~~~  477 (655)
T PRK03584        403 VYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGM-AVEAWDE-DGRPV-VG--EVGELVCTKPFPSMPL  477 (655)
T ss_pred             HHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCc-eeEEECC-CCCCC-CC--CceEEEEccCCCCCcc
Confidence            0000                             012345667775 8899998 78888 55  7899999996  7899


Q ss_pred             cccCCchhhh--cc-cc-CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCC
Q 048729          184 GYFKDKEATR--RC-IS-DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM  259 (330)
Q Consensus       184 gy~~~~~~~~--~~-~~-~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~  259 (330)
                      |||++++.+.  .. |. -+|||+|||++++|+||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++
T Consensus       478 gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~  557 (655)
T PRK03584        478 GFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWP  557 (655)
T ss_pred             eeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcC
Confidence            9999887432  11 11 16899999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          260 FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       260 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ..++++.++|++.++.... ....+++.+.++++|+++++|..|+++++||+|++||++|+.|++.+.+
T Consensus       558 ~~g~~~~a~vv~~~~~~~~-~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~  625 (655)
T PRK03584        558 DGDVRMPLFVVLAEGVTLD-DALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHG  625 (655)
T ss_pred             CCCEEEEEEEEECCCCCCc-HHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcC
Confidence            8889999999998764311 0123689999999999999999999999999999999999999998754

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.7e-45  Score=341.84  Aligned_cols=304  Identities=33%  Similarity=0.533  Sum_probs=264.8

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN   94 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~   94 (330)
                      +++.++|.++++++|+++|+++.++++||.||.+.+.++|.+|.+.|++++|+|++++++++++++.++||+++|++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~   81 (497)
T PRK06145          2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLP   81 (497)
T ss_pred             ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEcccchHHHH-----------------HHh----c--c---Cc--------------
Q 048729           95 INTRLDAHTLSVLLQHSESKLVFVDHLHTYLLL-----------------EAL----S--L---FP--------------  134 (330)
Q Consensus        95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~-----------------~~~----~--~---~~--------------  134 (330)
                      +++.++.+.+.++++..+++++++++.......                 ...    .  .   ..              
T Consensus        82 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTT  161 (497)
T PRK06145         82 INYRLAADEVAYILGDAGAKLLLVDEEFDAIVALETPKIVIDAAAQADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTT  161 (497)
T ss_pred             cccccCHHHHHHHHHhcCCcEEEEccchhhhhhcccceEEecCcccchhHHHhccCCCCCCCCCCCccceEEEEeCCCCC
Confidence            999999999999999999999988653322110                 000    0  0   00              


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       162 G~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~  241 (497)
T PRK06145        162 DRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTC  241 (497)
T ss_pred             CCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeE
Confidence                                                                                            


Q ss_pred             --------------------------------------hHHH---------------------------------Hhhcc
Q 048729          135 --------------------------------------QRAR---------------------------------LKARQ  143 (330)
Q Consensus       135 --------------------------------------~~~~---------------------------------~~~~~  143 (330)
                                                            ....                                 ...+.
T Consensus       242 ~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~  321 (497)
T PRK06145        242 AWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGST  321 (497)
T ss_pred             EEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCc
Confidence                                                  0000                                 01234


Q ss_pred             CCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCC
Q 048729          144 GVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSK  223 (330)
Q Consensus       144 G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~d  223 (330)
                      |.+++|. ++++.|+ ++.+++.+  +.|||+++|++++.||+++++.+...|. ++||+|||++++|++|.+++.||.|
T Consensus       322 G~~~~~~-~~~i~~~-~~~~~~~~--~~Gel~v~g~~~~~Gy~~~~~~~~~~~~-~~~~~TGDl~~~~~~g~l~~~GR~~  396 (497)
T PRK06145        322 GRALAHV-EIRIADG-AGRWLPPN--MKGEICMRGPKVTKGYWKDPEKTAEAFY-GDWFRSGDVGYLDEEGFLYLTDRKK  396 (497)
T ss_pred             ccCCCCc-eEEEECC-CCCCCCCC--CceEEEEECcchhhhhcCChHHHHHHHh-CCCeeccceEEEcCCCcEEEecccc
Confidence            5556664 6777777 77888777  7899999999999999999999888886 8999999999999999999999999


Q ss_pred             CeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceE
Q 048729          224 DVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKV  303 (330)
Q Consensus       224 d~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~  303 (330)
                      |+||++|+++++.+||+.+.++|+|.+++|++..++..++++.+++++.+...    ...+++.+.++++|+++.+|..+
T Consensus       397 ~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~~~l~~~~~p~~i  472 (497)
T PRK06145        397 DMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGAT----LTLEALDRHCRQRLASFKVPRQL  472 (497)
T ss_pred             ceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCC----CCHHHHHHHHHHhhhcCCCCCEE
Confidence            99999999999999999999999999999999998877888999988876544    56789999999999999999999


Q ss_pred             EEccCCCCCCCCcccHHHHHHHhh
Q 048729          304 VFSEELPKTSTGKIQKYLLREFAK  327 (330)
Q Consensus       304 ~~v~~lP~t~~GKv~r~~l~~~~~  327 (330)
                      ++++++|+|++||++|++|++++.
T Consensus       473 ~~v~~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        473 KVRDELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             EEeccCCCCCcccccHHHHHHHhc
Confidence            999999999999999999999875

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=6.3e-45  Score=346.55  Aligned_cols=309  Identities=32%  Similarity=0.508  Sum_probs=267.7

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      ..|+.++|.+.+..+|+++|+++.  ++.+||.||.+++.++|+.|.+.|+++||+|+++++++++++..++||+++|++
T Consensus        27 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~  106 (546)
T PLN02330         27 KLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGV  106 (546)
T ss_pred             CCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence            478999999999999999999974  578999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH------------------------Hhc---------cC-c---
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE------------------------ALS---------LF-P---  134 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~------------------------~~~---------~~-~---  134 (330)
                      ++|+++..+.+++.++++..+++++++++.....+..                        ...         .. .   
T Consensus       107 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (546)
T PLN02330        107 FSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEILQTDL  186 (546)
T ss_pred             eccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCcEEEecCCCCCCcccHHHHHhhccccCcccccccCCcccE
Confidence            9999999999999999999999999886543321110                        000         00 0   


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       187 a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~  266 (546)
T PLN02330        187 CALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRT  266 (546)
T ss_pred             EEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHH
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------h----HHH--------------------
Q 048729          135 ----------------------------------------------------Q----RAR--------------------  138 (330)
Q Consensus       135 ----------------------------------------------------~----~~~--------------------  138 (330)
                                                                          .    ...                    
T Consensus       267 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  346 (546)
T PLN02330        267 FLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITL  346 (546)
T ss_pred             HHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEeccccccccccee
Confidence                                                                0    000                    


Q ss_pred             ------------HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCc
Q 048729          139 ------------LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGD  206 (330)
Q Consensus       139 ------------~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD  206 (330)
                                  ...+.|.|++|. +++++|++++++++.+  +.|||+++|+.++.||+++++.+.+.+..+|||+|||
T Consensus       347 ~~~~~~~~~~~~~~~~vG~~~~~~-~v~i~d~~~~~~~p~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD  423 (546)
T PLN02330        347 THGDPEKGHGIAKKNSVGFILPNL-EVKFIDPDTGRSLPKN--TPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGD  423 (546)
T ss_pred             cCCCccccccccccCccccccCCc-EEEEEeCCCCccCCCC--CceEEEEecchhhhhhccCccchhhhccCCCceeccc
Confidence                        001345555664 6777776578888888  8899999999999999999998888787789999999


Q ss_pred             eEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHH
Q 048729          207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEI  286 (330)
Q Consensus       207 ~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  286 (330)
                      +++++++|.++++||.+|++|++|++|++.+||+.+.++|+|.+++|++.++...++.+.++++..++..    .+.+++
T Consensus       424 ~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~----~~~~~l  499 (546)
T PLN02330        424 IGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAK----ESEEDI  499 (546)
T ss_pred             EEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCC----CCHHHH
Confidence            9999999999999999999999999999999999999999999999999988878888999998876654    567899


Q ss_pred             HHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          287 IEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       287 ~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      .+.++.+|+.++.|+.+++++++|+|++||++|++|++++..+
T Consensus       500 ~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~  542 (546)
T PLN02330        500 LNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSI  542 (546)
T ss_pred             HHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999998765

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.1e-44  Score=350.60  Aligned_cols=306  Identities=23%  Similarity=0.306  Sum_probs=250.4

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeCC-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYNN-----TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPM   87 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~~-----~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~   87 (330)
                      ...++.+.+..   ++++++|+++.+     +++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||++
T Consensus        85 ~~~n~~~~~~~---~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~  161 (652)
T TIGR01217        85 ARLNYAENLLR---AAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATAS  161 (652)
T ss_pred             CeeeHHHHHhc---cCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            44566665554   467899988743     5799999999999999999999999999999999999999999999999


Q ss_pred             cCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch---------HHH--------------------------------
Q 048729           88 SGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT---------YLL--------------------------------  126 (330)
Q Consensus        88 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~--------------------------------  126 (330)
                      +|++++|+++.++++.+.+++++.+++++++.+...         ..+                                
T Consensus       162 ~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  241 (652)
T TIGR01217       162 VGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGA  241 (652)
T ss_pred             hCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCc
Confidence            999999999999999999999999999999864320         000                                


Q ss_pred             ------HHH--hcc-----Cc-----------------------------------------------------------
Q 048729          127 ------LEA--LSL-----FP-----------------------------------------------------------  134 (330)
Q Consensus       127 ------~~~--~~~-----~~-----------------------------------------------------------  134 (330)
                            ...  ...     ..                                                           
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  321 (652)
T TIGR01217       242 LDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWN  321 (652)
T ss_pred             ccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhhH
Confidence                  000  000     00                                                           


Q ss_pred             -----------------------------------------------------------------------------h--
Q 048729          135 -----------------------------------------------------------------------------Q--  135 (330)
Q Consensus       135 -----------------------------------------------------------------------------~--  135 (330)
                                                                                                   .  
T Consensus       322 ~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~  401 (652)
T TIGR01217       322 WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGF  401 (652)
T ss_pred             HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHH
Confidence                                                                                         0  


Q ss_pred             --H-H-----------------------------HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecC--cc
Q 048729          136 --R-A-----------------------------RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGG--CV  181 (330)
Q Consensus       136 --~-~-----------------------------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~--~~  181 (330)
                        . .                             ...+++|.|.+|. +++++|+ +|++++ +  +.|||+++|+  ++
T Consensus       402 ~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~-~v~ivd~-~g~~~~-g--~~GEl~v~gp~p~~  476 (652)
T TIGR01217       402 RWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGT-AVQSWDP-EGKPVT-G--EVGELVCTNPMPSM  476 (652)
T ss_pred             HHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCC-ceEEECC-CCCCCC-C--CccEEEEecCCCcc
Confidence              0 0                             0012234556665 7888887 788873 5  7899999996  58


Q ss_pred             cccccCCchhhh---cccc-CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeec
Q 048729          182 TVGYFKDKEATR---RCIS-DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARP  257 (330)
Q Consensus       182 ~~gy~~~~~~~~---~~~~-~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~  257 (330)
                      +.|||++++.+.   ..|. -+|||+|||+|++|+||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+
T Consensus       477 ~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~  556 (652)
T TIGR01217       477 PIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQE  556 (652)
T ss_pred             ccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeee
Confidence            999999987543   2222 268999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhh
Q 048729          258 DMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAK  327 (330)
Q Consensus       258 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~  327 (330)
                      ++..++.++++|++.++.... ....++++++++++|+++++|+.|+++++||+|++||++|+.|++.+.
T Consensus       557 ~~~~ge~~~afVv~~~~~~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~  625 (652)
T TIGR01217       557 QPDGGYRVVLFVHLAPGATLD-DALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQ  625 (652)
T ss_pred             cCCCCEEEEEEEEECCCCCCC-HHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHc
Confidence            998899999999998765411 012368999999999999999999999999999999999999999874

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.4e-44  Score=343.03  Aligned_cols=312  Identities=27%  Similarity=0.435  Sum_probs=269.2

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcC
Q 048729           10 ANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG   89 (330)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G   89 (330)
                      .+....++.++|.+.++.+|+++|+.+.++++||.||.+.+.++|++|.+.|+++||+|+++++|++++++.++||+++|
T Consensus        28 ~~~~~~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G  107 (567)
T PRK06178         28 YPHGERPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLG  107 (567)
T ss_pred             CCcCcccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhC
Confidence            34555789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh---------------------------------------
Q 048729           90 AILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL---------------------------------------  130 (330)
Q Consensus        90 ~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~---------------------------------------  130 (330)
                      ++++|+++..+...+.++++..+++++++.+...+.+....                                       
T Consensus       108 ~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (567)
T PRK06178        108 AVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGA  187 (567)
T ss_pred             eEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEecccccccccccccccccccccccccccc
Confidence            99999999999999999999999999998765443221100                                       


Q ss_pred             -----------cc-----Cc------------------------------------------------------------
Q 048729          131 -----------SL-----FP------------------------------------------------------------  134 (330)
Q Consensus       131 -----------~~-----~~------------------------------------------------------------  134 (330)
                                 ..     ..                                                            
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~  267 (567)
T PRK06178        188 IDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGEN  267 (567)
T ss_pred             ccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHH
Confidence                       00     00                                                            


Q ss_pred             --------------------------------------------h-------------------------------HHH-
Q 048729          135 --------------------------------------------Q-------------------------------RAR-  138 (330)
Q Consensus       135 --------------------------------------------~-------------------------------~~~-  138 (330)
                                                                  .                               ... 
T Consensus       268 ~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  347 (567)
T PRK06178        268 FGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRW  347 (567)
T ss_pred             HHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHH
Confidence                                                        0                               000 


Q ss_pred             -------------------------------------HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcc
Q 048729          139 -------------------------------------LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCV  181 (330)
Q Consensus       139 -------------------------------------~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~  181 (330)
                                                           .+.++|.|++|+ +++++|++++.+++.+  +.|||+++|+++
T Consensus       348 ~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~-~v~v~d~~~~~~~~~g--~~Gel~v~g~~v  424 (567)
T PRK06178        348 RALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGT-EFKICDFETGELLPLG--AEGEIVVRTPSL  424 (567)
T ss_pred             HHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCc-EEEEEcCCCCCcCCCC--CceEEEEECCcc
Confidence                                                 001134455554 5677775578888887  889999999999


Q ss_pred             cccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCC
Q 048729          182 TVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW  261 (330)
Q Consensus       182 ~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~  261 (330)
                      +.||+++++.+...+. +|||+|||+++++++|+++++||.+|++|++|.++++.+||+.+.++++|.++++++..++..
T Consensus       425 ~~gY~~~~~~~~~~~~-dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~  503 (567)
T PRK06178        425 LKGYWNKPEATAEALR-DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDK  503 (567)
T ss_pred             cccccCChhhhhhccc-CCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCccc
Confidence            9999999998888876 899999999999999999999999999999999999999999999999999999999988777


Q ss_pred             CceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhcC
Q 048729          262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSVS  330 (330)
Q Consensus       262 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~  330 (330)
                      ++.++++++..++..    .+.+++.+.++++++.+.+|. +.+++++|+|++||++|++|++++++++
T Consensus       504 g~~~~~~v~~~~~~~----~~~~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~~~  567 (567)
T PRK06178        504 GQVPVAFVQLKPGAD----LTAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEELK  567 (567)
T ss_pred             CcceEEEEEeCCCCc----CCHHHHHHHHHhcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHhhC
Confidence            788889998876654    577899999999999999996 8889999999999999999999998864

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-44  Score=340.23  Aligned_cols=307  Identities=27%  Similarity=0.393  Sum_probs=270.0

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      .+.|+.++|.++++++|+++|+++.++.+||.||.+.+.++++.|.+.|+++||+|++++++++++++.++||+++|+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~   89 (524)
T PRK06188         10 SGATYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR   89 (524)
T ss_pred             CCccHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccc-chHHHHHH----h---------------------c----------c----
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHL-HTYLLLEA----L---------------------S----------L----  132 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~-~~~~~~~~----~---------------------~----------~----  132 (330)
                      +++++.++.+.+.++++..+++.+++++. ........    .                     .          .    
T Consensus        90 v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (524)
T PRK06188         90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPD  169 (524)
T ss_pred             EecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHhhhccCcccccccCCCCC
Confidence            99999999999999999999999998865 21111000    0                     0          0    


Q ss_pred             Cc------------------------------------------------------------------------------
Q 048729          133 FP------------------------------------------------------------------------------  134 (330)
Q Consensus       133 ~~------------------------------------------------------------------------------  134 (330)
                      ..                                                                              
T Consensus       170 ~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~l~~G~~~~~~~~~~~~~~~~  249 (524)
T PRK06188        170 IAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAFFLPTLLRGGTVIVLAKFDPAEVLR  249 (524)
T ss_pred             eEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHHHHHHHHcCCEEEEcCCCCHHHHHH
Confidence            00                                                                              


Q ss_pred             ----------------------------------------------h-HH------------------------------
Q 048729          135 ----------------------------------------------Q-RA------------------------------  137 (330)
Q Consensus       135 ----------------------------------------------~-~~------------------------------  137 (330)
                                                                    . ..                              
T Consensus       250 ~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~  329 (524)
T PRK06188        250 AIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRD  329 (524)
T ss_pred             HHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchh
Confidence                                                          0 00                              


Q ss_pred             ------HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEe
Q 048729          138 ------RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH  211 (330)
Q Consensus       138 ------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~  211 (330)
                            ....++|.|++|. +++++|+ ++++++.+  +.|||+++|+.++.||++++..+...+. +|||+|||+++++
T Consensus       330 ~~~~~~~~~~~~G~p~~g~-~v~i~~~-~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGDl~~~~  404 (524)
T PRK06188        330 HDPDDPKRLTSCGRPTPGL-RVALLDE-DGREVAQG--EVGEICVRGPLVMDGYWNRPEETAEAFR-DGWLHTGDVARED  404 (524)
T ss_pred             ccccccccCCccccccCCc-EEEEEcC-CCCCCCCC--CeeEEEEECcchhhhhcCChHHhhhhhc-CCceeecceEEEc
Confidence                  0122457777775 7888888 78888888  8899999999999999999998888876 8999999999999


Q ss_pred             cCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHH
Q 048729          212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR  291 (330)
Q Consensus       212 ~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~  291 (330)
                      ++|.+++.||.+|++|++|++|+|.+||++|.++++|.+++|++.+++..++.+.+++++.+...    ...+++.+.++
T Consensus       405 ~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~  480 (524)
T PRK06188        405 EDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAA----VDAAELQAHVK  480 (524)
T ss_pred             CCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCC----CCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988777888999998876554    56789999999


Q ss_pred             hcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       292 ~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++++.+..|..++++++||+|++||++|++|++.+.+
T Consensus       481 ~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~  517 (524)
T PRK06188        481 ERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWE  517 (524)
T ss_pred             HhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHh
Confidence            9999999999999999999999999999999999854

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=1.5e-44  Score=344.45  Aligned_cols=309  Identities=20%  Similarity=0.268  Sum_probs=250.8

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeCCe----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYNNT----------TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYEL   81 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~----------~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~   81 (330)
                      +...++.++|.+.++++|+++|+++.+.          ++||+||.+++.++|++|.+.|+++||+|+++++|++++++.
T Consensus         3 ~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~   82 (552)
T PRK09274          3 ASMANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFAL   82 (552)
T ss_pred             hhhhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHH
Confidence            4567899999999999999999998654          899999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcc--cchHHH-------------------------HHHh----
Q 048729           82 QFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDH--LHTYLL-------------------------LEAL----  130 (330)
Q Consensus        82 ~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~--~~~~~~-------------------------~~~~----  130 (330)
                      ++||+++|++++|+++.++.+++.++++..+++++++++  .....+                         ....    
T Consensus        83 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  162 (552)
T PRK09274         83 TFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRDGA  162 (552)
T ss_pred             HHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccccCCccHHHhcccCc
Confidence            999999999999999999999999999999999999854  111100                         0000    


Q ss_pred             -cc-----Cc----------------------------------------------------------------------
Q 048729          131 -SL-----FP----------------------------------------------------------------------  134 (330)
Q Consensus       131 -~~-----~~----------------------------------------------------------------------  134 (330)
                       ..     ..                                                                      
T Consensus       163 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~g~~~~~~~~~  242 (552)
T PRK09274        163 AAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGPALGMTSVIPDMD  242 (552)
T ss_pred             cccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhhhhCCeEEecCcc
Confidence             00     00                                                                      


Q ss_pred             -------------------------------------------------------------h----HHHH----------
Q 048729          135 -------------------------------------------------------------Q----RARL----------  139 (330)
Q Consensus       135 -------------------------------------------------------------~----~~~~----------  139 (330)
                                                                                   .    ...+          
T Consensus       243 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~Y  322 (552)
T PRK09274        243 PTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPY  322 (552)
T ss_pred             cccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccc
Confidence                                                                         0    0000          


Q ss_pred             ----------------------------hhccCCcccCceeEEEeCCC--------CCcccCCCCceecEEEEecCcccc
Q 048729          140 ----------------------------KARQGVKTVGLAEVDVVNPE--------TGESVKRDGVSLGEVVLRGGCVTV  183 (330)
Q Consensus       140 ----------------------------~~~~G~~~~g~te~~i~d~~--------~g~~~~~~~~~~Gel~v~~~~~~~  183 (330)
                                                  ..++|.|++|. +++|+|+.        ++++++.+  +.|||+++|++++.
T Consensus       323 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~-~~~ivd~~~~~~~~~~~~~~~~~g--~~Gel~v~g~~~~~  399 (552)
T PRK09274        323 GATEALPISSIESREILFATRAATDNGAGICVGRPVDGV-EVRIIAISDAPIPEWDDALRLATG--EIGEIVVAGPMVTR  399 (552)
T ss_pred             cccccceeEeecchhhhccccccccCCCCcccCccCCCc-eEEEEeccccccccccccccCCCC--CeeEEEEecCcccc
Confidence                                        01345566664 66676641        35667777  88999999999999


Q ss_pred             cccCCchhhhccc--cCCC--eEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCC
Q 048729          184 GYFKDKEATRRCI--SDNG--WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM  259 (330)
Q Consensus       184 gy~~~~~~~~~~~--~~~g--~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~  259 (330)
                      ||+++++.+...+  ..+|  ||+|||+|++|++|++++.||.||+||++|.+|+|.+||++|.+||+|.+++|++.+++
T Consensus       400 GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~  479 (552)
T PRK09274        400 SYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVP  479 (552)
T ss_pred             cccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCC
Confidence            9999999887665  2356  99999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCC---CCCCCceEEEccCCCCC--CCCcccHHHHHHHhhh
Q 048729          260 FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLP---RYMVPRKVVFSEELPKT--STGKIQKYLLREFAKS  328 (330)
Q Consensus       260 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~---~~~~p~~~~~v~~lP~t--~~GKv~r~~l~~~~~~  328 (330)
                      . ++.++++|++.++..    ....++.+.+++.+.   .+..|.+++++++||+|  ++||++|++|++++.+
T Consensus       480 ~-~~~~~~~v~~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~  548 (552)
T PRK09274        480 G-AQRPVLCVELEPGVA----CSKSALYQELRALAAAHPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAAK  548 (552)
T ss_pred             C-CceEEEEEEccCccc----cchHHHhhhhHHHHHhcCCCcceeEEeccCCCCccccccccccHHHHHHHHHH
Confidence            3 567888888877654    344445555555444   44577889999999999  7999999999998865

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.1e-44  Score=340.72  Aligned_cols=317  Identities=34%  Similarity=0.520  Sum_probs=271.7

Q ss_pred             ccCCCCCCCCCCCHHHHHHHHHHhcCCCcEEEe--CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Q 048729            4 LLLPNSANSTPLTTLGFLERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYEL   81 (330)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~a~~~--~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~   81 (330)
                      ...+...+....++.++|.+.++++|+++|+++  .++++||.||.+.+.++|++|.+.|+++||+|++++++++++++.
T Consensus         7 ~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~   86 (558)
T PRK12583          7 YQGGGDKPLLTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLT   86 (558)
T ss_pred             ccCCCCCCcccCcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHH
Confidence            344555667778999999999999999999987  457899999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH-----HHH-----------------------------
Q 048729           82 QFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY-----LLL-----------------------------  127 (330)
Q Consensus        82 ~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~-----------------------------  127 (330)
                      ++||+++|++++++++.++.+++.++++..+++++++.+....     .+.                             
T Consensus        87 ~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (558)
T PRK12583         87 QFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLA  166 (558)
T ss_pred             HHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEec
Confidence            9999999999999999999999999999999999988653210     000                             


Q ss_pred             -----------HH---hc------------cC-----c------------------------------------------
Q 048729          128 -----------EA---LS------------LF-----P------------------------------------------  134 (330)
Q Consensus       128 -----------~~---~~------------~~-----~------------------------------------------  134 (330)
                                 ..   ..            ..     .                                          
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~  246 (558)
T PRK12583        167 PAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLC  246 (558)
T ss_pred             CCCCccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEE
Confidence                       00   00            00     0                                          


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       247 ~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G  326 (558)
T PRK12583        247 VPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAG  326 (558)
T ss_pred             EecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecC
Confidence                                                                                            


Q ss_pred             ------hHH----------------------------------HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEE
Q 048729          135 ------QRA----------------------------------RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEV  174 (330)
Q Consensus       135 ------~~~----------------------------------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel  174 (330)
                            ...                                  ....++|.|++|. +++++|+ ++.+++.+  +.|||
T Consensus       327 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~~~i~d~-~~~~~~~g--~~Gel  402 (558)
T PRK12583        327 APCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHL-EVKVVDP-DGATVPRG--EIGEL  402 (558)
T ss_pred             CCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCC-eEEEECC-CCCCCCCC--CeeEE
Confidence                  000                                  0112455666664 7788888 58888888  88999


Q ss_pred             EEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEE
Q 048729          175 VLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV  254 (330)
Q Consensus       175 ~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~  254 (330)
                      +++|+.++.||++++..+...+..++||+|||+++++++|.+++.||.||++|++|.+|+|.+||+.+.++|+|.+++|+
T Consensus       403 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~  482 (558)
T PRK12583        403 CTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVF  482 (558)
T ss_pred             EEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEE
Confidence            99999999999999998888775689999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       255 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +..+...++.++++++..++..    .+.+++.+.++++|+++.+|..+++++++|+|++||++|++|++++.+
T Consensus       483 ~~~~~~~~~~~~~~v~~~~~~~----~~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~  552 (558)
T PRK12583        483 GVPDEKYGEEIVAWVRLHPGHA----ASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIE  552 (558)
T ss_pred             eeecCCCCcEEEEEEEECCCCC----CCHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHh
Confidence            9988877788899998876654    567899999999999999999999999999999999999999998753

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.3e-44  Score=338.80  Aligned_cols=311  Identities=37%  Similarity=0.606  Sum_probs=274.6

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      +.+.++.++|.++++.+|+++|+.+.++++||+||.+.++++|++|.+.|+++||+|+++++++++++++++||+++|++
T Consensus         3 ~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~   82 (521)
T PRK06187          3 DYPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAV   82 (521)
T ss_pred             cccCCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            45779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc-------------------------------c------C-
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS-------------------------------L------F-  133 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-------------------------------~------~-  133 (330)
                      ++++++.++.+.+..+++..++++++++......+.....                               .      . 
T Consensus        83 ~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (521)
T PRK06187         83 LHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFDFP  162 (521)
T ss_pred             EEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhcCCccCCCC
Confidence            9999999999999999999999999998765443322100                               0      0 


Q ss_pred             c-------------------------------------------------------------------------------
Q 048729          134 P-------------------------------------------------------------------------------  134 (330)
Q Consensus       134 ~-------------------------------------------------------------------------------  134 (330)
                      .                                                                               
T Consensus       163 ~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~  242 (521)
T PRK06187        163 DIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF  242 (521)
T ss_pred             CCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC
Confidence            0                                                                               


Q ss_pred             ---------------------------------------------------------h----------------------
Q 048729          135 ---------------------------------------------------------Q----------------------  135 (330)
Q Consensus       135 ---------------------------------------------------------~----------------------  135 (330)
                                                                               .                      
T Consensus       243 ~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~  322 (521)
T PRK06187        243 DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVV  322 (521)
T ss_pred             CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCccc
Confidence                                                                     0                      


Q ss_pred             -----HH------HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEe
Q 048729          136 -----RA------RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT  204 (330)
Q Consensus       136 -----~~------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~T  204 (330)
                           ..      ....+.|.+++|. +++|+|+ ++.+++.+.++.|||+++|+.++.||+++++.+.+.|. +|||+|
T Consensus       323 ~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~-~~~~~t  399 (521)
T PRK06187        323 SVLPPEDQLPGQWTKRRSAGRPLPGV-EARIVDD-DGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETID-GGWLHT  399 (521)
T ss_pred             ccCCcccccccccccCCccccccCCe-EEEEECC-CCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhh-CCceec
Confidence                 00      0223456667774 7888888 78888883238899999999999999999998888887 789999


Q ss_pred             CceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHH
Q 048729          205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEK  284 (330)
Q Consensus       205 GD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  284 (330)
                      ||+++++++|.+++.||.+|++|++|.++++.+||+.+.++++|.++++++..++..++++.++++..++..    .+.+
T Consensus       400 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----~~~~  475 (521)
T PRK06187        400 GDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGAT----LDAK  475 (521)
T ss_pred             cceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCC----CCHH
Confidence            999999999999999999999999999999999999999999999999999988877889999999887765    6789


Q ss_pred             HHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          285 EIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       285 ~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      ++.+.++++++++.+|..++++++||+|++||++|..|+++|++-
T Consensus       476 ~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~~  520 (521)
T PRK06187        476 ELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEG  520 (521)
T ss_pred             HHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999764

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.4e-44  Score=340.42  Aligned_cols=313  Identities=31%  Similarity=0.461  Sum_probs=269.9

Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhc
Q 048729            9 SANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMS   88 (330)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~   88 (330)
                      |.....+|+.+.|.+.+..+|+++|+.+.++.+||.||.+.++++|++|.+.|+++||+|+++++++++++..++||+++
T Consensus        11 ~~~~~~~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~   90 (542)
T PRK07786         11 PYLARRQNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANML   90 (542)
T ss_pred             CCcccccCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence            44556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH------------------------------h-cc-----
Q 048729           89 GAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA------------------------------L-SL-----  132 (330)
Q Consensus        89 G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~------------------------------~-~~-----  132 (330)
                      |++++|+++.++.+.+..+++..+++++++++.....+...                              . ..     
T Consensus        91 G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (542)
T PRK07786         91 GAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAEAGPAHAPVD  170 (542)
T ss_pred             CeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHhhccCCCCCCCC
Confidence            99999999999999999999999999999875443221100                              0 00     


Q ss_pred             C----c--------------------------------------------------------------------------
Q 048729          133 F----P--------------------------------------------------------------------------  134 (330)
Q Consensus       133 ~----~--------------------------------------------------------------------------  134 (330)
                      .    .                                                                          
T Consensus       171 ~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~  250 (542)
T PRK07786        171 IPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLG  250 (542)
T ss_pred             CCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCC
Confidence            0    0                                                                          


Q ss_pred             -----------------------------------------------------------hHH------------------
Q 048729          135 -----------------------------------------------------------QRA------------------  137 (330)
Q Consensus       135 -----------------------------------------------------------~~~------------------  137 (330)
                                                                                 ...                  
T Consensus       251 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~  330 (542)
T PRK07786        251 AFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSP  330 (542)
T ss_pred             CcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeeccccccc
Confidence                                                                       000                  


Q ss_pred             -----------HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCc
Q 048729          138 -----------RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGD  206 (330)
Q Consensus       138 -----------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD  206 (330)
                                 ....++|.|++|. +++|+|+ ++++++.+  +.|||+++|+.++.||+++++.+...|. +|||+|||
T Consensus       331 ~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~f~-~~~~~TGD  405 (542)
T PRK07786        331 VTCMLLGEDAIRKLGSVGKVIPTV-AARVVDE-NMNDVPVG--EVGEIVYRAPTLMSGYWNNPEATAEAFA-GGWFHSGD  405 (542)
T ss_pred             ceEecCcccccccCCCccccCCCc-eEEEECC-CCCCCcCC--CceEEEEEChhhhhhhcCCHHHHHHHhh-CCcccccc
Confidence                       0112345555664 6777776 77888877  8899999999999999999999988886 89999999


Q ss_pred             eEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHH
Q 048729          207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEI  286 (330)
Q Consensus       207 ~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  286 (330)
                      +++++++|.++++||.+|++|++|.+|++.+||+.+.++|+|.+++|++...+..++.++++++...+...   ...+++
T Consensus       406 l~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l  482 (542)
T PRK07786        406 LVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAA---LTLEDL  482 (542)
T ss_pred             eEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCC---CCHHHH
Confidence            99999999999999999999999999999999999999999999999998877667788888887654321   467899


Q ss_pred             HHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          287 IEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       287 ~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      .+.+++++++|++|..++++++||+|++||++|++|++++.+.
T Consensus       483 ~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~  525 (542)
T PRK07786        483 AEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGAC  525 (542)
T ss_pred             HHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999765

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.4e-44  Score=347.93  Aligned_cols=310  Identities=26%  Similarity=0.347  Sum_probs=258.7

Q ss_pred             CCH-HHHHHHHHHhcCCCcEEEeC------CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729           15 LTT-LGFLERAAAAYTDCPSLVYN------NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPM   87 (330)
Q Consensus        15 ~~~-~~~l~~~~~~~p~~~a~~~~------~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~   87 (330)
                      .|+ .++|.+.++.+|+++|+++.      .+++||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||++
T Consensus        52 ~n~~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  131 (629)
T PRK10524         52 TNLCHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACAR  131 (629)
T ss_pred             eeHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            344 56777788889999999962      36899999999999999999999999999999999999999999999999


Q ss_pred             cCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch---------HHHH-------------------------------
Q 048729           88 SGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT---------YLLL-------------------------------  127 (330)
Q Consensus        88 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~-------------------------------  127 (330)
                      +|++++|+++.++++.+.++++..+++++++.+...         ..+.                               
T Consensus       132 ~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  211 (629)
T PRK10524        132 IGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDV  211 (629)
T ss_pred             hCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcc
Confidence            999999999999999999999999999999864310         0000                               


Q ss_pred             ------HH-h-cc-----Cc------------------------------------------------------------
Q 048729          128 ------EA-L-SL-----FP------------------------------------------------------------  134 (330)
Q Consensus       128 ------~~-~-~~-----~~------------------------------------------------------------  134 (330)
                            .. . ..     ..                                                            
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  291 (629)
T PRK10524        212 DYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHS  291 (629)
T ss_pred             cHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccch
Confidence                  00 0 00     00                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       292 ~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~  371 (629)
T PRK10524        292 YIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPT  371 (629)
T ss_pred             HHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHH
Confidence                                                                                            


Q ss_pred             -------------------hH--------------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecC--
Q 048729          135 -------------------QR--------------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGG--  179 (330)
Q Consensus       135 -------------------~~--------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~--  179 (330)
                                         +.              .....+.|.|++|. +++|+|+++|++++.+  +.|||+++|+  
T Consensus       372 ~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~-~~~i~d~~~g~~~~~g--~~Gel~i~gp~~  448 (629)
T PRK10524        372 ASWISEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGY-NVKLLNEVTGEPCGPN--EKGVLVIEGPLP  448 (629)
T ss_pred             HHHHHHhcCCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCc-eEEEEeCCCCCCCCCC--CcEEEEEcCCCC
Confidence                               00              00112456777886 8888887688999888  8899999998  


Q ss_pred             -cccccccCCchhhhcccc---CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEe
Q 048729          180 -CVTVGYFKDKEATRRCIS---DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA  255 (330)
Q Consensus       180 -~~~~gy~~~~~~~~~~~~---~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~  255 (330)
                       ..+.|||++++...+.+.   .++||+|||++++|++|+++++||.||+||++|++|+|.+||++|.+||+|.+++|++
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg  528 (629)
T PRK10524        449 PGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVG  528 (629)
T ss_pred             hhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEc
Confidence             578899999876655432   3689999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCceeEEEEEecCCcccCC----CCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhh
Q 048729          256 RPDMFWGEIPCAFVSLKRDLELTK----KPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAK  327 (330)
Q Consensus       256 ~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~  327 (330)
                      .+++..++.++++++++++.....    ....+++++.++++|+++++|..|+++++||+|++||++|+.|++.+.
T Consensus       529 ~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~  604 (629)
T PRK10524        529 VKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAE  604 (629)
T ss_pred             cccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHc
Confidence            999888889999999877543110    013578899999999999999999999999999999999999999864

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.8e-44  Score=338.94  Aligned_cols=306  Identities=27%  Similarity=0.341  Sum_probs=259.2

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSV-GIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~-g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      ..++.++|...+.  ++++++++.++++||.||.+++.++|++|.+. |++++++|+++++|++++++.++||+++|+++
T Consensus         4 ~~~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~   81 (529)
T PRK07867          4 APTVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVP   81 (529)
T ss_pred             cccHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            4578899988774  89999999999999999999999999999976 89999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH-----------------hc---c-------Cc-----------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA-----------------LS---L-------FP-----------  134 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----------------~~---~-------~~-----------  134 (330)
                      +|+++.++.+++.++++..++++++++......+...                 ..   .       ..           
T Consensus        82 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TS  161 (529)
T PRK07867         82 VGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVDSPAWADELAAHRDAEPPFRVADPDDLFMLIFTS  161 (529)
T ss_pred             EEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEeccccHHHHhcccCCCCCCcccCCccceEEEEECC
Confidence            9999999999999999999999999987554432210                 00   0       00           


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       162 GTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~  241 (529)
T PRK07867        162 GTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYG  241 (529)
T ss_pred             CCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhC
Confidence                                                                                            


Q ss_pred             ---------------------------------------hHHHHhhccCCc---ccCceeE-------------------
Q 048729          135 ---------------------------------------QRARLKARQGVK---TVGLAEV-------------------  153 (330)
Q Consensus       135 ---------------------------------------~~~~~~~~~G~~---~~g~te~-------------------  153 (330)
                                                             ....+....|.+   .||.||.                   
T Consensus       242 vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~~~gg~~~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~g~~~  321 (529)
T PRK07867        242 ATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEGAPGDIARFARRFGCVVVDGFGSTEGGVAITRTPDTPPGALGPLP  321 (529)
T ss_pred             CeEEeccHHHHHHHHhCCCcccccccceEEEecCCCChHHHHHHHHHhCCcEEEeecccccccccccCCCCCCCCcCCCC
Confidence                                                   000001112222   2677663                   


Q ss_pred             ---EEeCCCCCcccCCCCce------------ecEEEE-ecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEE
Q 048729          154 ---DVVNPETGESVKRDGVS------------LGEVVL-RGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVE  217 (330)
Q Consensus       154 ---~i~d~~~g~~~~~~~~~------------~Gel~v-~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~  217 (330)
                         ++++++++.+++.+  +            .|||++ +|++++.||+++++.+...+. +|||+|||+++++++|.++
T Consensus       322 ~~~~i~~~~~~~~~~~g--~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~  398 (529)
T PRK07867        322 PGVAIVDPDTGTECPPA--EDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR-GGVYWSGDLAYRDADGYAY  398 (529)
T ss_pred             CCEEEEECCCCCCCCCC--ccccccccccCCcceEEEEecCCcccccccCChHhhhhhhc-CCeEeeccEEEEeCCCcEE
Confidence               33443456666665  4            799999 999999999999998888786 8999999999999999999


Q ss_pred             EEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhc--CC
Q 048729          218 IKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR--LP  295 (330)
Q Consensus       218 ~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~--l~  295 (330)
                      +.||.||++|++|++|+|.+||+.|.++|+|.+++|++..++..++++.+++++.++..    .+.+++.++++.+  |+
T Consensus       399 ~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~----~~~~~l~~~~~~~~~l~  474 (529)
T PRK07867        399 FAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAK----FDPDAFAEFLAAQPDLG  474 (529)
T ss_pred             EeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCC----CCHHHHHHHHHhhccCC
Confidence            99999999999999999999999999999999999999999888899999999887755    6788999999875  99


Q ss_pred             CCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          296 RYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       296 ~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++++|..+++++++|+|++||++|++|++++..
T Consensus       475 ~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~  507 (529)
T PRK07867        475 PKQWPSYVRVCAELPRTATFKVLKRQLSAEGVD  507 (529)
T ss_pred             cccCCeEEEEeeccCCCCCcceeHHHHHHhcCC
Confidence            999999999999999999999999999998743

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-44  Score=343.04  Aligned_cols=314  Identities=23%  Similarity=0.326  Sum_probs=254.2

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcC
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG   89 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G   89 (330)
                      .-+.++.+.|.+.++.+|+++|+++.  ++.+||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|
T Consensus        11 ~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G   90 (540)
T PRK05857         11 QLPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLG   90 (540)
T ss_pred             cCCcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            34568999999999999999999853  4689999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH---HHH------------------------H--------------
Q 048729           90 AILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY---LLL------------------------E--------------  128 (330)
Q Consensus        90 ~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---~~~------------------------~--------------  128 (330)
                      ++++|+++.++.+++.++++..+++.+++++....   .+.                        .              
T Consensus        91 ~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (540)
T PRK05857         91 AIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSED  170 (540)
T ss_pred             eEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccccccccccccccccccccCCCCCC
Confidence            99999999999999999999999999887653210   000                        0              


Q ss_pred             -----------------------------Hhc----c-------------Cc----------------------------
Q 048729          129 -----------------------------ALS----L-------------FP----------------------------  134 (330)
Q Consensus       129 -----------------------------~~~----~-------------~~----------------------------  134 (330)
                                                   ...    .             .+                            
T Consensus       171 ~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~~~~~~  250 (540)
T PRK05857        171 PLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVTGGENTT  250 (540)
T ss_pred             eEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHhhcceeEEecCCChh
Confidence                                         000    0             00                            


Q ss_pred             ---------------------------------------------------hH---------------------------
Q 048729          135 ---------------------------------------------------QR---------------------------  136 (330)
Q Consensus       135 ---------------------------------------------------~~---------------------------  136 (330)
                                                                         ..                           
T Consensus       251 ~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~  330 (540)
T PRK05857        251 SLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFIEATGVRTAQVYGLSETGCTALCLP  330 (540)
T ss_pred             HHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHHHHHhCCeeecccCCCcCCceeeecc
Confidence                                                               00                           


Q ss_pred             -------HHHhhccCCcccCceeEEEeCCCCCc-ccCCC---CceecEEEEecCcccccccCCchhhhccccCCCeEEeC
Q 048729          137 -------ARLKARQGVKTVGLAEVDVVNPETGE-SVKRD---GVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTG  205 (330)
Q Consensus       137 -------~~~~~~~G~~~~g~te~~i~d~~~g~-~~~~~---~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TG  205 (330)
                             .....++|.+++|. +++|+|+ ++. +++.+   .++.|||+++|++++.||+++++.+.+.|. +|||+||
T Consensus       331 ~~~~~~~~~~~~~~G~~~~g~-~v~i~d~-~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~-~g~~~TG  407 (540)
T PRK05857        331 TDDGSIVKIEAGAVGRPYPGV-DVYLAAT-DGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLI-DGWVNTG  407 (540)
T ss_pred             cccccccccccCCcCcccCCc-EEEEECc-cccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcC-CCceecc
Confidence                   00113456666775 7777776 443 23211   126799999999999999999999888886 8999999


Q ss_pred             ceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCC-CCCHH
Q 048729          206 DIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTK-KPTEK  284 (330)
Q Consensus       206 D~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~  284 (330)
                      |+|++|++|++++.||.||+||++|++|+|.+||+.|..||+|.+++|++.++...++.+.++++..+...... ....+
T Consensus       408 Dlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~  487 (540)
T PRK05857        408 DLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKH  487 (540)
T ss_pred             ceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998777777877777655422100 01123


Q ss_pred             HHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          285 EIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       285 ~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .+.+.++++++++.+|..+++++++|+|++||++|++|++.+++
T Consensus       488 ~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~  531 (540)
T PRK05857        488 TIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATA  531 (540)
T ss_pred             HHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhh
Confidence            44455567799999999999999999999999999999999874

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-44  Score=345.57  Aligned_cols=306  Identities=26%  Similarity=0.418  Sum_probs=259.7

Q ss_pred             HHHHHHHHHH-hcCCCcEEEeC----CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           17 TLGFLERAAA-AYTDCPSLVYN----NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        17 ~~~~l~~~~~-~~p~~~a~~~~----~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      +.+++.+.+. .+|+++|+.+.    .+++||+||.+.+.++|.+|.+.|+++||+|+++++|++++++.+|||+++|++
T Consensus        45 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v  124 (570)
T PRK04319         45 AYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAI  124 (570)
T ss_pred             HHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence            4467777776 57999999874    368999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHH---------------------------HH----hc---------
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLL---------------------------EA----LS---------  131 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~---------------------------~~----~~---------  131 (330)
                      ++|+++.++++++.++++..+++++++++.......                           ..    ..         
T Consensus       125 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (570)
T PRK04319        125 VGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDEFDIEWTDR  204 (570)
T ss_pred             EcccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCcCCCcCccCHHHHHhhcCCcCCccccCC
Confidence            999999999999999999999999998754321110                           00    00         


Q ss_pred             -cCc----------------------------------------------------------------------------
Q 048729          132 -LFP----------------------------------------------------------------------------  134 (330)
Q Consensus       132 -~~~----------------------------------------------------------------------------  134 (330)
                       ...                                                                            
T Consensus       205 ~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~  284 (570)
T PRK04319        205 EDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSP  284 (570)
T ss_pred             CCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCH
Confidence             000                                                                            


Q ss_pred             --------------------------------------------------------------------------hH----
Q 048729          135 --------------------------------------------------------------------------QR----  136 (330)
Q Consensus       135 --------------------------------------------------------------------------~~----  136 (330)
                                                                                                +.    
T Consensus       285 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~  364 (570)
T PRK04319        285 ERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIM  364 (570)
T ss_pred             HHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEE
Confidence                                                                                      00    


Q ss_pred             -------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEec--CcccccccCCchhhhccccCCCeEEeCce
Q 048729          137 -------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRG--GCVTVGYFKDKEATRRCISDNGWFYTGDI  207 (330)
Q Consensus       137 -------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~g~~~TGD~  207 (330)
                             .....++|.|++|. +++|+|+ ++.+++.+  +.|||+++|  ++++.||+++++.+.+.|. +|||+|||+
T Consensus       365 ~~~~~~~~~~~~~~G~p~~g~-~~~i~d~-~~~~~~~g--~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TGDl  439 (570)
T PRK04319        365 IANYPAMDIKPGSMGKPLPGI-EAAIVDD-QGNELPPN--RMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSGDS  439 (570)
T ss_pred             EecCCCCCCCCCcCcCCCCCC-EEEEECC-CCCCCCCC--CceEEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeCcE
Confidence                   00123456667775 7888887 78888777  889999997  7899999999999988887 899999999


Q ss_pred             EEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHH
Q 048729          208 GVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEII  287 (330)
Q Consensus       208 ~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  287 (330)
                      ++++++|.++++||.||+||.+|++|+|.+||+.+.++|+|.+++|++.+++..++.+.+++++.++.... ....+++.
T Consensus       440 ~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~-~~~~~~l~  518 (570)
T PRK04319        440 AYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPS-EELKEEIR  518 (570)
T ss_pred             EEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCC-HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888888999999887764310 02236899


Q ss_pred             HHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          288 EYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       288 ~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++++++|+.|.+|..++++++||+|++||++|++|++++.+
T Consensus       519 ~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~  559 (570)
T PRK04319        519 GFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWELG  559 (570)
T ss_pred             HHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHhC
Confidence            99999999999999999999999999999999999998644

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=5.9e-44  Score=340.03  Aligned_cols=311  Identities=30%  Similarity=0.500  Sum_probs=265.2

Q ss_pred             CCCCCCHHHHHHHHHHhcCCCcEEEeCC-eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcC
Q 048729           11 NSTPLTTLGFLERAAAAYTDCPSLVYNN-TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG   89 (330)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~p~~~a~~~~~-~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G   89 (330)
                      .+...|+.++|.+.++.+||++|+++.. +++||+||.+++.++|++|.+.|+++||+|+++++|++++++.++||+++|
T Consensus        19 ~~~~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G   98 (547)
T PRK06087         19 YWGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVG   98 (547)
T ss_pred             CCCCCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            3445689999999999999999999865 799999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch-----HHHHH----------------------------Hh------
Q 048729           90 AILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT-----YLLLE----------------------------AL------  130 (330)
Q Consensus        90 ~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~-----~~~~~----------------------------~~------  130 (330)
                      ++++|+++.++.+++.++++..++++++++....     ..+..                            ..      
T Consensus        99 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (547)
T PRK06087         99 AVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPL  178 (547)
T ss_pred             cEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCCcc
Confidence            9999999999999999999999999998864210     00000                            00      


Q ss_pred             -cc--Cc-------------------------------------------------------------------------
Q 048729          131 -SL--FP-------------------------------------------------------------------------  134 (330)
Q Consensus       131 -~~--~~-------------------------------------------------------------------------  134 (330)
                       ..  ..                                                                         
T Consensus       179 ~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~  258 (547)
T PRK06087        179 TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSV  258 (547)
T ss_pred             cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEE
Confidence             00  00                                                                         


Q ss_pred             ----------------------------------------------------------hH--------------------
Q 048729          135 ----------------------------------------------------------QR--------------------  136 (330)
Q Consensus       135 ----------------------------------------------------------~~--------------------  136 (330)
                                                                                ..                    
T Consensus       259 ~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~~~~l~~~YG~TE~  338 (547)
T PRK06087        259 LLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTES  338 (547)
T ss_pred             ecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCcEEEEeccccc
Confidence                                                                      00                    


Q ss_pred             ------------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEe
Q 048729          137 ------------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT  204 (330)
Q Consensus       137 ------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~T  204 (330)
                                  .....+.|.+++|. +++++|+ ++.+++.+  +.|||+++|++++.||+++++.+...+..+|||+|
T Consensus       339 ~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~T  414 (547)
T PRK06087        339 SPHAVVNLDDPLSRFMHTDGYAAAGV-EIKVVDE-ARKTLPPG--CEGEEASRGPNVFMGYLDEPELTARALDEEGWYYS  414 (547)
T ss_pred             CCccccCCCcchhhcCCcCCccCCCc-eEEEEcC-CCCCCcCC--CcceEEEecccccccccCCHHHHHHHhCCCCCcCc
Confidence                        00012346666774 7788887 78888887  88999999999999999999998888877899999


Q ss_pred             CceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHH
Q 048729          205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEK  284 (330)
Q Consensus       205 GD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  284 (330)
                      ||++++|++|.++++||.+|+|+.+|++|+|.+||+.+.++|+|.++++++..++..+++++++++..+...   ..+.+
T Consensus       415 GDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~---~~~~~  491 (547)
T PRK06087        415 GDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHH---SLTLE  491 (547)
T ss_pred             CceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCC---CCCHH
Confidence            999999999999999999999999999999999999999999999999999988877889999998876321   15678


Q ss_pred             HHHHHHH-hcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          285 EIIEYCR-ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       285 ~l~~~l~-~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++.+.+. +.++++++|..|.++++||+|++||++|+.|++++.+
T Consensus       492 ~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~  536 (547)
T PRK06087        492 EVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMR  536 (547)
T ss_pred             HHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHH
Confidence            8888875 5799999999999999999999999999999887753

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-43  Score=337.49  Aligned_cols=320  Identities=52%  Similarity=0.829  Sum_probs=266.9

Q ss_pred             ccCCCCCCCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Q 048729            4 LLLPNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQF   83 (330)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~l   83 (330)
                      -...+..+..++++.++|.+.++.+|+++|+.+.+.++||+||.+.+.++|.+|.+.|+++||+|+++++++++++..++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l   86 (545)
T PRK08162          7 GLDRNAANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHF   86 (545)
T ss_pred             ccCccccccccCCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHH
Confidence            33444555667899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh---------------------------------
Q 048729           84 GVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL---------------------------------  130 (330)
Q Consensus        84 a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~---------------------------------  130 (330)
                      ||+++|++++|+++.++.+.+.++++..+++.+++++.....+....                                 
T Consensus        87 A~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (545)
T PRK08162         87 GVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFL  166 (545)
T ss_pred             HHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHh
Confidence            99999999999999999999999999999999998764432211100                                 


Q ss_pred             -----------cc---Cc--------------------------------------------------------------
Q 048729          131 -----------SL---FP--------------------------------------------------------------  134 (330)
Q Consensus       131 -----------~~---~~--------------------------------------------------------------  134 (330)
                                 ..   ..                                                              
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~  246 (545)
T PRK08162        167 ASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAA  246 (545)
T ss_pred             ccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHH
Confidence                       00   00                                                              


Q ss_pred             ----------------------------------------------------------------hHHHHhhccCC---cc
Q 048729          135 ----------------------------------------------------------------QRARLKARQGV---KT  147 (330)
Q Consensus       135 ----------------------------------------------------------------~~~~~~~~~G~---~~  147 (330)
                                                                                      .........|.   ..
T Consensus       247 ~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  326 (545)
T PRK08162        247 RAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHV  326 (545)
T ss_pred             HccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHhCCceeec
Confidence                                                                            00000000111   12


Q ss_pred             cCcee--------------------------------------EEEeCCCCCcccCCCCceecEEEEecCcccccccCCc
Q 048729          148 VGLAE--------------------------------------VDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDK  189 (330)
Q Consensus       148 ~g~te--------------------------------------~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~  189 (330)
                      ||.||                                      +.++|++++.+++.++.+.|||+++|+.++.||++++
T Consensus       327 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~  406 (545)
T PRK08162        327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNP  406 (545)
T ss_pred             ccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCCh
Confidence            45444                                      3444544566666543256999999999999999999


Q ss_pred             hhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEE
Q 048729          190 EATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFV  269 (330)
Q Consensus       190 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v  269 (330)
                      +.+...|. +|||+|||++++|++|.++++||.||++|++|.+|++.+||+.|.++|+|.+++|++.+++..++.+++++
T Consensus       407 ~~~~~~~~-~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v  485 (545)
T PRK08162        407 KATEEAFA-GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFV  485 (545)
T ss_pred             hhhHHHhh-CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEE
Confidence            99988887 89999999999999999999999999999999999999999999999999999999998877778899999


Q ss_pred             EecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          270 SLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       270 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      ++.++..    .+.+++.+.++++|+++.+|..+++ .++|+|++||++|+.|++.+.+|
T Consensus       486 ~~~~~~~----~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~l  540 (545)
T PRK08162        486 ELKDGAS----ATEEEIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKSL  540 (545)
T ss_pred             EeCCCCC----CCHHHHHHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhhh
Confidence            8877654    5678999999999999999999876 68999999999999999998776

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=6.7e-44  Score=338.14  Aligned_cols=303  Identities=29%  Similarity=0.470  Sum_probs=261.2

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      ...++.++|.+.++.+|+++|+++.++++||+||.+.++++|.+|.+.|+++||+|+++++|++++++.++|++++|+++
T Consensus        21 ~~~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~  100 (527)
T TIGR02275        21 QDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAP  100 (527)
T ss_pred             cCCcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEE
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccch--------HHHHH-------------------------Hh--c----cC
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHT--------YLLLE-------------------------AL--S----LF  133 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--------~~~~~-------------------------~~--~----~~  133 (330)
                      +++++.++.+.+.++++..+++++++.....        ..+..                         ..  .    ..
T Consensus       101 v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (527)
T TIGR02275       101 VLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELFLWLESPAEPVKFPPT  180 (527)
T ss_pred             eccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhhHHhhCcCccccCCCC
Confidence            9999999999999999999999999875321        00000                         00  0    00


Q ss_pred             c-------------------------------------------------------------------------------
Q 048729          134 P-------------------------------------------------------------------------------  134 (330)
Q Consensus       134 ~-------------------------------------------------------------------------------  134 (330)
                      .                                                                               
T Consensus       181 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~  260 (527)
T TIGR02275       181 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDP  260 (527)
T ss_pred             CCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCC
Confidence            0                                                                               


Q ss_pred             ------------------------------------------------------hHHH----------------------
Q 048729          135 ------------------------------------------------------QRAR----------------------  138 (330)
Q Consensus       135 ------------------------------------------------------~~~~----------------------  138 (330)
                                                                            ....                      
T Consensus       261 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~  340 (527)
T TIGR02275       261 SPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNY  340 (527)
T ss_pred             CHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccc
Confidence                                                                  0000                      


Q ss_pred             ---------HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEE
Q 048729          139 ---------LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGV  209 (330)
Q Consensus       139 ---------~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~  209 (330)
                               ...+.|.|+.+.++++++|+ +|++++.+  +.|||+++|++++.||+++++.+...+..+|||+|||+++
T Consensus       341 ~~~~~~~~~~~~~~G~~~~~~~~v~i~d~-~g~~~~~g--~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~  417 (527)
T TIGR02275       341 TRLDDPAEIIFTTQGRPMSPDDEVRVVDD-HGNPVAPG--ETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVR  417 (527)
T ss_pred             cCCCCccccccccCCCCCCCCceEEEECC-CCCCCCCC--CceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEE
Confidence                     01234555532236777776 77888877  8899999999999999999999988888799999999999


Q ss_pred             EecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHH
Q 048729          210 MHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEY  289 (330)
Q Consensus       210 ~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~  289 (330)
                      ++++|++++.||.+|+||++|.+|+|.+||+.|.++|+|.+++|++..++..+++++++++..++.     .+..++.+.
T Consensus       418 ~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~-----~~~~~l~~~  492 (527)
T TIGR02275       418 LTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPA-----LKAAQLRRF  492 (527)
T ss_pred             EcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCC-----CCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988888999999876653     567899999


Q ss_pred             HHhc-CCCCCCCceEEEccCCCCCCCCcccHHHHH
Q 048729          290 CRAR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLR  323 (330)
Q Consensus       290 l~~~-l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~  323 (330)
                      ++++ ++++++|..+.+++++|+|++||++|++|+
T Consensus       493 l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       493 LRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR  527 (527)
T ss_pred             HHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence            9985 999999999999999999999999999874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.1e-44  Score=339.82  Aligned_cols=308  Identities=30%  Similarity=0.490  Sum_probs=264.6

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      ...++.++|...+..+|+++|+++.++.+||+||.+.+.++|++|.+.|+++||+|+++++++++++.++|||+++|+++
T Consensus        22 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~  101 (563)
T PRK06710         22 DIQPLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIV  101 (563)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEE
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHH----------------------------------------------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLL----------------------------------------------  126 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~----------------------------------------------  126 (330)
                      +|+++.++.+++.++++..+++++++++.....+                                              
T Consensus       102 vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (563)
T PRK06710        102 VQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSES  181 (563)
T ss_pred             eccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhccccccccccccc
Confidence            9999999999999999999999998865221100                                              


Q ss_pred             ------HHH------------h--ccCc----------------------------------------------------
Q 048729          127 ------LEA------------L--SLFP----------------------------------------------------  134 (330)
Q Consensus       127 ------~~~------------~--~~~~----------------------------------------------------  134 (330)
                            ...            .  ....                                                    
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~  261 (563)
T PRK06710        182 ETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHV  261 (563)
T ss_pred             chhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHH
Confidence                  000            0  0000                                                    


Q ss_pred             -----------------------------------------------------------------------------hHH
Q 048729          135 -----------------------------------------------------------------------------QRA  137 (330)
Q Consensus       135 -----------------------------------------------------------------------------~~~  137 (330)
                                                                                                   ...
T Consensus       262 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~~~~  341 (563)
T PRK06710        262 YGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQE  341 (563)
T ss_pred             HHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHHHHH
Confidence                                                                                         000


Q ss_pred             H-------------------------------HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCccccccc
Q 048729          138 R-------------------------------LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYF  186 (330)
Q Consensus       138 ~-------------------------------~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~  186 (330)
                      .                               ...+.|.++.|. ++++++++++.+++.+  +.|||+++|+.++.||+
T Consensus       342 ~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~~~~~~~~~~~g--~~Gel~v~g~~~~~gY~  418 (563)
T PRK06710        342 KFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDT-EAMIMSLETGEALPPG--EIGEIVVKGPQIMKGYW  418 (563)
T ss_pred             HHHHhhCCCEecccccccCccccccCcccccccCCccCCCCCCC-eEEEEECCCCccCCCC--CceEEEEecCccchhhh
Confidence            0                               011234444553 5566665577888888  78999999999999999


Q ss_pred             CCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeE
Q 048729          187 KDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPC  266 (330)
Q Consensus       187 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~  266 (330)
                      ++++.+...+. +|||+|||+++++++|.+++.||.||+||++|.+|+|.+||+.+.++|+|.+++|++..++..++.++
T Consensus       419 ~~~~~~~~~~~-~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  497 (563)
T PRK06710        419 NKPEETAAVLQ-DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVK  497 (563)
T ss_pred             CChHHHhhhcc-cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeE
Confidence            99999888886 89999999999999999999999999999999999999999999999999999999999887788899


Q ss_pred             EEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          267 AFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       267 ~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++++..++..    .+.+++.+.++++++++.+|..+.+++++|+|++||++|++|++++..
T Consensus       498 ~~v~~~~~~~----~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~  555 (563)
T PRK06710        498 AFVVLKEGTE----CSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKR  555 (563)
T ss_pred             EEEEECCCCC----CCHHHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhh
Confidence            9998877654    567899999999999999999999999999999999999999998753

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=3e-45  Score=405.64  Aligned_cols=304  Identities=21%  Similarity=0.276  Sum_probs=267.1

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      ..++.++|.++++.+||++|+++.++++||+||.++++++|++|.+.|+++||+|++++++++++++++|||+++|++++
T Consensus      3094 ~~~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~v 3173 (3956)
T PRK12467       3094 ERLVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYV 3173 (3956)
T ss_pred             cccHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEee
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc----------------cC------c-----------------
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS----------------LF------P-----------------  134 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~----------------~~------~-----------------  134 (330)
                      |+++.++.+++.++++..++++++++......+.....                ..      +                 
T Consensus      3174 pld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PK 3253 (3956)
T PRK12467       3174 PLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLNGYSENNPSTRVMGENLAYVIYTSGSTGKPK 3253 (3956)
T ss_pred             cCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeeecchhhcccCCCCCcccCCCCceEEEEEccCCCCCcc
Confidence            99999999999999999999999998655433211000                00      0                 


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus      3254 gV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~ 3333 (3956)
T PRK12467       3254 GVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACF 3333 (3956)
T ss_pred             eeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEc
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------------hH-H-----HHhhccCC
Q 048729          135 ---------------------------------------------------------------QR-A-----RLKARQGV  145 (330)
Q Consensus       135 ---------------------------------------------------------------~~-~-----~~~~~~G~  145 (330)
                                                                                     .. .     ....++|+
T Consensus      3334 ~Ps~l~~l~~~~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~ 3413 (3956)
T PRK12467       3334 PPAYLQQFAEDAGGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGR 3413 (3956)
T ss_pred             CHHHHHHHHhcccccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCcc
Confidence                                                                           00 0     01135677


Q ss_pred             cccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCC-------eEEeCceEEEecCceEEE
Q 048729          146 KTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNG-------WFYTGDIGVMHADGYVEI  218 (330)
Q Consensus       146 ~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g-------~~~TGD~~~~~~~G~l~~  218 (330)
                      |+.|. ++.|+|+ ++++++.|  +.|||+|+|+.+++||+++|+.+.+.|..++       ||+|||+|++++||+++|
T Consensus      3414 p~~~~-~~~v~d~-~~~~vp~G--~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~ 3489 (3956)
T PRK12467       3414 PVAGR-SIYVLDG-QLNPVPVG--VAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEY 3489 (3956)
T ss_pred             ccCCC-EEEEECC-CCCCCCCC--CCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEE
Confidence            77775 7888887 78999998  8999999999999999999999999886543       699999999999999999


Q ss_pred             EecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCC
Q 048729          219 KDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYM  298 (330)
Q Consensus       219 ~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~  298 (330)
                      +||+||+||++|++|+|.+||+.|.++|+|.+++|++... ..+++++++++......    ...+++++.++++|+.|+
T Consensus      3490 ~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~~~----~~~~~l~~~l~~~Lp~y~ 3564 (3956)
T PRK12467       3490 LGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDG-AGGKQLVAYVVPADPQG----DWRETLRDHLAASLPDYM 3564 (3956)
T ss_pred             eccccceEeeceEeecHHHHHHHHhhCcccceEEEEEecC-CCCcEEEEEEeCCCCCc----ccHHHHHHHHhccCChhh
Confidence            9999999999999999999999999999999999998754 35678999998776543    567899999999999999


Q ss_pred             CCceEEEccCCCCCCCCcccHHHHHHHh
Q 048729          299 VPRKVVFSEELPKTSTGKIQKYLLREFA  326 (330)
Q Consensus       299 ~p~~~~~v~~lP~t~~GKv~r~~l~~~~  326 (330)
                      +|..|+++++||+|++||+||++|.+..
T Consensus      3565 vP~~~~~l~~lP~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467       3565 VPAQLLVLAAMPLGPNGKVDRKALPDPD 3592 (3956)
T ss_pred             CCCeeeeeccCCCCCCCccchhhcCCCC
Confidence            9999999999999999999999998754

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-43  Score=338.15  Aligned_cols=305  Identities=30%  Similarity=0.454  Sum_probs=262.8

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      ..+.++.++|.+.++.+|+++|+++.++.+||.||.+.++++|++|.+.|+++||+|+++++|++++++.++||+++|++
T Consensus        20 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~   99 (557)
T PRK07059         20 SQYPSLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYV   99 (557)
T ss_pred             CCCCCHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeE
Confidence            33468999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH------------------------------------------
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA------------------------------------------  129 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~------------------------------------------  129 (330)
                      ++|+++.++.+++.++++..+++++++++.....+...                                          
T Consensus       100 ~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (557)
T PRK07059        100 VVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLP  179 (557)
T ss_pred             EeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccccCCC
Confidence            99999999999999999999888888644321110000                                          


Q ss_pred             --------h---c--c---------------------------------------------------------------C
Q 048729          130 --------L---S--L---------------------------------------------------------------F  133 (330)
Q Consensus       130 --------~---~--~---------------------------------------------------------------~  133 (330)
                              .   .  .                                                               .
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (557)
T PRK07059        180 GHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL  259 (557)
T ss_pred             CcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeC
Confidence                    0   0  0                                                               0


Q ss_pred             c-------------------------------------------------------------------------------
Q 048729          134 P-------------------------------------------------------------------------------  134 (330)
Q Consensus       134 ~-------------------------------------------------------------------------------  134 (330)
                      +                                                                               
T Consensus       260 pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~  339 (557)
T PRK07059        260 PLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAV  339 (557)
T ss_pred             CcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEeccccC
Confidence            0                                                                               


Q ss_pred             ---hHH-------------------------------HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCc
Q 048729          135 ---QRA-------------------------------RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGC  180 (330)
Q Consensus       135 ---~~~-------------------------------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~  180 (330)
                         ...                               ....+.|.|+.|. +++++|+ +|++++.+  +.|||+++|+.
T Consensus       340 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~-~v~i~d~-~~~~~~~g--~~Gel~v~g~~  415 (557)
T PRK07059        340 QRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPST-EVSIRDD-DGNDLPLG--EPGEICIRGPQ  415 (557)
T ss_pred             CHHHHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCCc-EEEEECC-CCCCCCCC--CceEEEEeCCc
Confidence               000                               0113456666664 7788887 78888888  88999999999


Q ss_pred             ccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCC
Q 048729          181 VTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMF  260 (330)
Q Consensus       181 ~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~  260 (330)
                      ++.||+++++.+.+.+..+|||+|||+++++++|.++++||.+|++|++|++|+|.+||+.+.++|+|.+++|++..+..
T Consensus       416 ~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~  495 (557)
T PRK07059        416 VMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEH  495 (557)
T ss_pred             cchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCC
Confidence            99999999999888887789999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHH
Q 048729          261 WGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREF  325 (330)
Q Consensus       261 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~  325 (330)
                      .++.++++++.....     ...+++.+.+.++++.+..|..+.+++++|+|++||++|+.|+++
T Consensus       496 ~ge~~~~~v~~~~~~-----~~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        496 SGEAVKLFVVKKDPA-----LTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDG  555 (557)
T ss_pred             CCeeEEEEEEeCCCC-----CCHHHHHHHHHHhcccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence            788888888765432     567899999999999999999999999999999999999999875

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=5.3e-44  Score=336.89  Aligned_cols=307  Identities=19%  Similarity=0.242  Sum_probs=254.0

Q ss_pred             CHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeec
Q 048729           16 TTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNI   95 (330)
Q Consensus        16 ~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l   95 (330)
                      ++.+.|.+.+..+|+++|+.+.++++||.||.+++.++|+.|.+.|+++||+|+++++|+.++++.+|||+++|++++|+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~   80 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV   80 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcccchHH--------------HHHHhc------cCc---------------------
Q 048729           96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYL--------------LLEALS------LFP---------------------  134 (330)
Q Consensus        96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~--------------~~~~~~------~~~---------------------  134 (330)
                      ++.++.+.+.++++..+++.++++......              +.....      ...                     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~  160 (502)
T TIGR01734        81 DTSIPSERIEMIIEAAGPELVIHTAELSIDAVGTQIITLSALEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQ  160 (502)
T ss_pred             CCcChHHHHHHHHHhcCCCEEEecccccccccCCceEEchHhhhhhhhcCCccccccCCCCCeEEEEECCCCCCCCCEEE
Confidence            999999999999999999999987643211              000000      000                     


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       161 ~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p  240 (502)
T TIGR01734       161 ISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTP  240 (502)
T ss_pred             EecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEECh
Confidence                                                                                            


Q ss_pred             ---------------------------------hHHHHh------------------------------------hccCC
Q 048729          135 ---------------------------------QRARLK------------------------------------ARQGV  145 (330)
Q Consensus       135 ---------------------------------~~~~~~------------------------------------~~~G~  145 (330)
                                                       ....+.                                    .++|.
T Consensus       241 ~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~  320 (502)
T TIGR01734       241 SFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGF  320 (502)
T ss_pred             hHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCcccccc
Confidence                                             000000                                    12333


Q ss_pred             cccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcccc---CCCeEEeCceEEEecCceEEEEecC
Q 048729          146 KTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS---DNGWFYTGDIGVMHADGYVEIKDRS  222 (330)
Q Consensus       146 ~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~~g~~~TGD~~~~~~~G~l~~~GR~  222 (330)
                      +.+|+ +++|+|+ ++.+++.+  +.|||+++|+.++.||+++++.+.+.|.   ..+||+|||+|++|++ ++++.||.
T Consensus       321 ~~~~~-~~~i~~~-~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~  395 (502)
T TIGR01734       321 AKPDM-NLFIMDE-EGEPLPEG--EKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRL  395 (502)
T ss_pred             ccCCC-EEEEECC-CCCCCCCC--CeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccc
Confidence            34443 4556666 67888877  8899999999999999999988776652   2369999999999966 99999999


Q ss_pred             CCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeec-CCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCc
Q 048729          223 KDVIISGGENICSAEVESVLYSITAVNEAAVVARP-DMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR  301 (330)
Q Consensus       223 dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~  301 (330)
                      +|+||++|++|+|.+||+.+.++|+|.++++++.. .....+.++++++.............+++++.++++++++.+|.
T Consensus       396 ~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~  475 (502)
T TIGR01734       396 DFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPR  475 (502)
T ss_pred             cCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCc
Confidence            99999999999999999999999999999999965 44445678888887665432221234788999999999999999


Q ss_pred             eEEEccCCCCCCCCcccHHHHHHHhh
Q 048729          302 KVVFSEELPKTSTGKIQKYLLREFAK  327 (330)
Q Consensus       302 ~~~~v~~lP~t~~GKv~r~~l~~~~~  327 (330)
                      .++++++||+|++||++|++|++++.
T Consensus       476 ~~~~v~~lP~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       476 KFIYRDQLPLTANGKIDRKALAEEVN  501 (502)
T ss_pred             EEEEccccCCCCCCcccHHHHHHhhc
Confidence            99999999999999999999999875

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-43  Score=334.24  Aligned_cols=299  Identities=23%  Similarity=0.347  Sum_probs=258.7

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      .+.++.+.|.+++..+|+++|+++.++.+||+|+.+.++++|++|.+.|+++||+|+++++|+++++..+||++.+|+++
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~  112 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV  112 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh-------------cc---------------------------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL-------------SL---------------------------  132 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-------------~~---------------------------  132 (330)
                      +|+++.++.+.+.++++..+++++++++.+...+....             ..                           
T Consensus       113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~il~TSGTTG~PK~v  192 (516)
T PRK13383        113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPATAGAEESGGRPAVAAPGRIVLLTSGTTGKPKGV  192 (516)
T ss_pred             EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcceEEeccchhhhhcCCCCCCCCCCCcEEEECCCCCCCCCee
Confidence            99999999999999999999999998654332211100             00                           


Q ss_pred             ---------------------Cc---------------------------------------------------------
Q 048729          133 ---------------------FP---------------------------------------------------------  134 (330)
Q Consensus       133 ---------------------~~---------------------------------------------------------  134 (330)
                                           ..                                                         
T Consensus       193 ~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P  272 (516)
T PRK13383        193 PRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVP  272 (516)
T ss_pred             eecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecH
Confidence                                 00                                                         


Q ss_pred             -----------------------------------h-------------------------------HHHHhhccCCccc
Q 048729          135 -----------------------------------Q-------------------------------RARLKARQGVKTV  148 (330)
Q Consensus       135 -----------------------------------~-------------------------------~~~~~~~~G~~~~  148 (330)
                                                         .                               ......++|.+++
T Consensus       273 ~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~  352 (516)
T PRK13383        273 VVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKPVA  352 (516)
T ss_pred             HHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCCCC
Confidence                                               0                               0001224566666


Q ss_pred             CceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEe
Q 048729          149 GLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIIS  228 (330)
Q Consensus       149 g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~  228 (330)
                      |. +++|+|+ +|++++.+  +.|||+++|+.++.||++.+...   +. +|||+|||++++|++|++++.||.+|++|+
T Consensus       353 ~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~~~~~Y~~~~~~~---~~-~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~  424 (516)
T PRK13383        353 GC-PVRILDR-NNRPVGPR--VTGRIFVGGELAGTRYTDGGGKA---VV-DGMTSTGDMGYLDNAGRLFIVGREDDMIIS  424 (516)
T ss_pred             Cc-EEEEECC-CCCCCCCC--CceEEEEecCcccccccCCchhh---ee-cCceecceeEEEcCCccEEEeccccceEEE
Confidence            64 7888887 78888887  88999999999999999876422   23 899999999999999999999999999999


Q ss_pred             CCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccC
Q 048729          229 GGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEE  308 (330)
Q Consensus       229 ~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~  308 (330)
                      +|++|++.+||+.|.++|+|.++++++..+...++.+.++|++.++..    .+.+++.+.++++++++.+|..+.++++
T Consensus       425 ~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~----~~~~~l~~~~~~~l~~~~~p~~i~~v~~  500 (516)
T PRK13383        425 GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSG----VDAAQLRDYLKDRVSRFEQPRDINIVSS  500 (516)
T ss_pred             CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCC----CCHHHHHHHHHHhcccCCCCcEEEEeCC
Confidence            999999999999999999999999999988877888999998876654    5678999999999999999999999999


Q ss_pred             CCCCCCCcccHHHHH
Q 048729          309 LPKTSTGKIQKYLLR  323 (330)
Q Consensus       309 lP~t~~GKv~r~~l~  323 (330)
                      +|+|++||++|++|.
T Consensus       501 iP~t~~gKi~r~~L~  515 (516)
T PRK13383        501 IPRNPTGKVLRKELP  515 (516)
T ss_pred             CCCCCCCcCcHHHhC
Confidence            999999999999873

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.1e-43  Score=337.12  Aligned_cols=303  Identities=28%  Similarity=0.481  Sum_probs=260.2

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSS-VGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~-~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      .++.++|.++++.+|+++|+++.++++||.||.++++++|++|.+ .|+++||+|+++++|+++++..++||+++|++++
T Consensus        24 ~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v  103 (562)
T PRK12492         24 KSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVV  103 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence            589999999999999999999989999999999999999999997 4999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccchHH------------------------------------------------
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYL------------------------------------------------  125 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~------------------------------------------------  125 (330)
                      ++++.++.+++.++++..+++++++++.+...                                                
T Consensus       104 ~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (562)
T PRK12492        104 NTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQ  183 (562)
T ss_pred             ccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCCcc
Confidence            99999999999999999999888763211000                                                


Q ss_pred             ----------------------------------------------------H---HHHh--------------c-c---
Q 048729          126 ----------------------------------------------------L---LEAL--------------S-L---  132 (330)
Q Consensus       126 ----------------------------------------------------~---~~~~--------------~-~---  132 (330)
                                                                          .   ....              . .   
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (562)
T PRK12492        184 AVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIA  263 (562)
T ss_pred             cccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEE
Confidence                                                                0   0000              0 0   


Q ss_pred             -Cc-----------------------------------------------------------------------------
Q 048729          133 -FP-----------------------------------------------------------------------------  134 (330)
Q Consensus       133 -~~-----------------------------------------------------------------------------  134 (330)
                       .+                                                                             
T Consensus       264 ~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~  343 (562)
T PRK12492        264 PLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGT  343 (562)
T ss_pred             ecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEeccc
Confidence             00                                                                             


Q ss_pred             -----hHHH-------------------------------HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEec
Q 048729          135 -----QRAR-------------------------------LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRG  178 (330)
Q Consensus       135 -----~~~~-------------------------------~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~  178 (330)
                           ....                               ...+.|.|++|. +++|+|+ ++.+++.+  +.|||+++|
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~-~v~ivd~-~~~~~~~g--~~Gel~v~g  419 (562)
T PRK12492        344 ALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGT-ALKVIDD-DGNELPLG--ERGELCIKG  419 (562)
T ss_pred             cCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccceecCCC-EEEEECC-CCCCCCCC--CceEEEEeC
Confidence                 0000                               012455666664 7788887 78888887  789999999


Q ss_pred             CcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecC
Q 048729          179 GCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPD  258 (330)
Q Consensus       179 ~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  258 (330)
                      +.++.||+++++.+.+.|..+|||+|||++++|++|.+++.||.||++|++|++|+|.+||+.+.++|.|.++++++.++
T Consensus       420 ~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~  499 (562)
T PRK12492        420 PQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPD  499 (562)
T ss_pred             CccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccC
Confidence            99999999999999888876899999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHh
Q 048729          259 MFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFA  326 (330)
Q Consensus       259 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~  326 (330)
                      ...++.+.++++.....     .+.+++.+.+.++++.+.+|..+.++++||+|++||++|++|++++
T Consensus       500 ~~~~~~~~~~v~~~~~~-----~~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~~  562 (562)
T PRK12492        500 ERSGEAVKLFVVARDPG-----LSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDIA  562 (562)
T ss_pred             CCCCceEEEEEEeCCCC-----CCHHHHHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHHhhC
Confidence            77778888888765432     4678999999999999999999999999999999999999999763

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-43  Score=337.12  Aligned_cols=307  Identities=27%  Similarity=0.370  Sum_probs=252.4

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGI-QRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~-~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      .|+.++|..++  +|+++|+++.+.++||.||.+++.++|..|.+.|+ ++||+|+++++|++++++.++||+++|++++
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v   80 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLV   80 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEE
Confidence            46888887654  79999999999999999999999999999999999 7999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH------------------hc---------cCc------------
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA------------------LS---------LFP------------  134 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~------------------~~---------~~~------------  134 (330)
                      |+++.++.+++.++++..++++++++......+...                  ..         ...            
T Consensus        81 ~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG  160 (540)
T PRK13388         81 GLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDTPAYAELVAAAGALTPHREVDAMDPFMLIFTSG  160 (540)
T ss_pred             EecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEccchhhhhhhccccCcCCCCCCCCCCeEEEEECCC
Confidence            999999999999999999999999976543322110                  00         000            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       161 TTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~v  240 (540)
T PRK13388        161 TTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGA  240 (540)
T ss_pred             CCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCC
Confidence                                                                                            


Q ss_pred             --------------------------------------hHHHHhhccCC---cccCceeEEE------------------
Q 048729          135 --------------------------------------QRARLKARQGV---KTVGLAEVDV------------------  155 (330)
Q Consensus       135 --------------------------------------~~~~~~~~~G~---~~~g~te~~i------------------  155 (330)
                                                            ....+....|.   ..||.||...                  
T Consensus       241 t~~~~~p~~l~~l~~~~~~~~~~~~~l~~~~G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~vG~p~~  320 (540)
T PRK13388        241 TYFNYVGKPLAYILATPERPDDADNPLRVAFGNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREPGTPPGSIGRGAP  320 (540)
T ss_pred             eEEEehHHHHHHHHhCCCCccccccceEEEECCCCCHHHHHHHHHHhCCceecccccccccceeecCCCCCCCCCCCCCC
Confidence                                                  00000001122   2366666421                  


Q ss_pred             ----eCCC------------CCcccCCCCceecEEEEe-cCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEE
Q 048729          156 ----VNPE------------TGESVKRDGVSLGEVVLR-GGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEI  218 (330)
Q Consensus       156 ----~d~~------------~g~~~~~~~~~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~  218 (330)
                          ++++            +|+.+..++ ..|||+++ |++++.||+++++.+.+.|. +|||+|||++++|++|.+++
T Consensus       321 g~~i~~~~~~~~~~~~~~d~~g~~~~~~~-~~GEl~v~~g~~~~~gY~~~~~~t~~~~~-~g~~~TGD~~~~~~dg~l~i  398 (540)
T PRK13388        321 GVAIYNPETLTECAVARFDAHGALLNADE-AIGELVNTAGAGFFEGYYNNPEATAERMR-HGMYWSGDLAYRDADGWIYF  398 (540)
T ss_pred             CcEEEcCCCCccccceeccCccccccCCC-cceEEEEecCCcccccccCChHHHHHHhh-cCceeccceEEEcCCCcEEE
Confidence                1110            222222211 57999998 99999999999999888886 89999999999999999999


Q ss_pred             EecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhc--CCC
Q 048729          219 KDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR--LPR  296 (330)
Q Consensus       219 ~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~--l~~  296 (330)
                      .||.||+||++|++|+|.+||+.+.++|+|.+++|++.+++..++.+++++++.++..    .+.+++.++++.+  |++
T Consensus       399 ~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~----~~~~~l~~~l~~~~~l~~  474 (540)
T PRK13388        399 AGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGAT----FDPDAFAAFLAAQPDLGT  474 (540)
T ss_pred             eccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCc----CCHHHHHHHHHhhccCCc
Confidence            9999999999999999999999999999999999999998877888888888877654    5678899999764  999


Q ss_pred             CCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          297 YMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       297 ~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      +++|..++++++||+|++||++|++|+++..++
T Consensus       475 ~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~  507 (540)
T PRK13388        475 KAWPRYVRIAADLPSTATNKVLKRELIAQGWAT  507 (540)
T ss_pred             ccCCcEEEEeccCCCCCcceeeHHhHHHhccCC
Confidence            999999999999999999999999999987554

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-43  Score=339.16  Aligned_cols=313  Identities=26%  Similarity=0.298  Sum_probs=254.5

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcC
Q 048729           10 ANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG   89 (330)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G   89 (330)
                      .+....|+.++|.+.++.+|+++|+++.++++||+||...++++|.+|.+.|+++||+|+++++|+++++++++||+++|
T Consensus        32 ~~~~~~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G  111 (600)
T PRK08279         32 TPDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLG  111 (600)
T ss_pred             CCCCcccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence            44667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh---------------------------------cc----
Q 048729           90 AILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL---------------------------------SL----  132 (330)
Q Consensus        90 ~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~---------------------------------~~----  132 (330)
                      ++++++++.++.+.+.++++..++++++++......+....                                 ..    
T Consensus       112 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (600)
T PRK08279        112 AVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPA  191 (600)
T ss_pred             cEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHhhhcccCCccCCC
Confidence            99999999999999999999999999998865443321100                                 00    


Q ss_pred             ----Cc--------------------------------------------------------------------------
Q 048729          133 ----FP--------------------------------------------------------------------------  134 (330)
Q Consensus       133 ----~~--------------------------------------------------------------------------  134 (330)
                          ..                                                                          
T Consensus       192 ~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~  271 (600)
T PRK08279        192 SRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLAL  271 (600)
T ss_pred             cccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEE
Confidence                00                                                                          


Q ss_pred             --------------------------------------------------------hHHHHhhcc----CCcccCceeEE
Q 048729          135 --------------------------------------------------------QRARLKARQ----GVKTVGLAEVD  154 (330)
Q Consensus       135 --------------------------------------------------------~~~~~~~~~----G~~~~g~te~~  154 (330)
                                                                              ....+....    -.+.||.||..
T Consensus       272 ~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~  351 (600)
T PRK08279        272 RRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLMIGNGLRPDIWDEFQQRFGIPRILEFYAASEGN  351 (600)
T ss_pred             cCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEEecCCCCHHHHHHHHHHhCcceeeeeecccccc
Confidence                                                                    000001111    23458888743


Q ss_pred             Ee---------------------------CCCCCc----------ccCCCCceecEEE--EecCcccccccCCchhhhcc
Q 048729          155 VV---------------------------NPETGE----------SVKRDGVSLGEVV--LRGGCVTVGYFKDKEATRRC  195 (330)
Q Consensus       155 i~---------------------------d~~~g~----------~~~~~~~~~Gel~--v~~~~~~~gy~~~~~~~~~~  195 (330)
                      +.                           +..+|.          +++.+  +.||++  +.++.++.|| ++++.+.+.
T Consensus       352 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g--~~Gel~~~i~~~~~~~GY-~~~~~t~~~  428 (600)
T PRK08279        352 VGFINVFNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPG--EVGLLIGRITDRGPFDGY-TDPEASEKK  428 (600)
T ss_pred             eeecccCCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCC--CceeEEEEecCccccccc-CCchhhHHH
Confidence            21                           000111          23344  779998  6789999999 888777655


Q ss_pred             c------cCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCC-CceeEEE
Q 048729          196 I------SDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW-GEIPCAF  268 (330)
Q Consensus       196 ~------~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~-~~~~~~~  268 (330)
                      +      ..++||+|||+|++|++|.+++.||.||+||++|++|+|.+||+.+.++|+|.+++|++.+.+.. +....++
T Consensus       429 ~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~  508 (600)
T PRK08279        429 ILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAA  508 (600)
T ss_pred             HhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeE
Confidence            4      22589999999999999999999999999999999999999999999999999999999876543 3345555


Q ss_pred             EEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          269 VSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       269 v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      ++..++..    .+.+++.+.++++|++|++|..+++++++|+|++||++|++|++++.+.
T Consensus       509 vv~~~~~~----~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  565 (600)
T PRK08279        509 IVLADGAE----FDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDP  565 (600)
T ss_pred             EEecCCcc----CCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCc
Confidence            66554433    6779999999999999999999999999999999999999999887543

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=2.8e-44  Score=403.42  Aligned_cols=304  Identities=22%  Similarity=0.245  Sum_probs=267.7

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      ..++.++|.++++.+|+++|+++.++++||+||.+.++++|++|.+.|+++||+|++++++++++++++|||+++|++++
T Consensus      2002 ~~~~~~~~~~~a~~~p~~~A~~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~v 2081 (5163)
T PRK12316       2002 GPGVHQRIAEQAARAPEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYV 2081 (5163)
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEcCCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEe
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH-----------------Hhcc------Cc----------------
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE-----------------ALSL------FP----------------  134 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~-----------------~~~~------~~----------------  134 (330)
                      |+++.++.+++.++++..+++++++++.....+..                 ....      .+                
T Consensus      2082 pld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~P 2161 (5163)
T PRK12316       2082 PLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLP 2161 (5163)
T ss_pred             ecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccccceEeccchhhhhccCccCCCCCCCCCCeEEEEeCccCCCCC
Confidence            99999999999999999999999998654332110                 0000      00                


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus      2162 KgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~ 2241 (5163)
T PRK12316       2162 KGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILD 2241 (5163)
T ss_pred             CEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEE
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------h-----------HHH----Hhhcc
Q 048729          135 --------------------------------------------------------Q-----------RAR----LKARQ  143 (330)
Q Consensus       135 --------------------------------------------------------~-----------~~~----~~~~~  143 (330)
                                                                              +           ...    ...++
T Consensus      2242 ~~P~~~~~l~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~i 2321 (5163)
T PRK12316       2242 FPPVYLQQLAEHAERDGRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPI 2321 (5163)
T ss_pred             cChHHHHHHHhhhhcccCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccCCCcCCc
Confidence                                                                    0           000    01356


Q ss_pred             CCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC-------CCeEEeCceEEEecCceE
Q 048729          144 GVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD-------NGWFYTGDIGVMHADGYV  216 (330)
Q Consensus       144 G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------~g~~~TGD~~~~~~~G~l  216 (330)
                      |.|+.|. ++.|+|+ +++++|.+  +.|||+|+|+++++||+++|+.+.+.|..       ++||+|||+|++++||.+
T Consensus      2322 G~p~~~~-~~~i~d~-~~~~vp~g--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l 2397 (5163)
T PRK12316       2322 GRALGNR-RAYILDA-DLNLLAPG--MAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVV 2397 (5163)
T ss_pred             ccccCCC-EEEEECC-CCCCCCCC--CeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcE
Confidence            7777775 8888887 78899988  89999999999999999999999988842       359999999999999999


Q ss_pred             EEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCC
Q 048729          217 EIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPR  296 (330)
Q Consensus       217 ~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~  296 (330)
                      +|+||+||+||++|+||+|.+||+.|.++|+|.+++|++..+. .+++++++++...+..    ...+++++.++++|+.
T Consensus      2398 ~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~~~----~~~~~l~~~l~~~Lp~ 2472 (5163)
T PRK12316       2398 EYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDAAE----DLLAELRAWLAARLPA 2472 (5163)
T ss_pred             EEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCCCc----cCHHHHHHHHHhhCch
Confidence            9999999999999999999999999999999999999998765 6778999999887654    6789999999999999


Q ss_pred             CCCCceEEEccCCCCCCCCcccHHHHHHHh
Q 048729          297 YMVPRKVVFSEELPKTSTGKIQKYLLREFA  326 (330)
Q Consensus       297 ~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~  326 (330)
                      |++|..++++++||+|+|||+||++|.+..
T Consensus      2473 ~~vP~~~~~l~~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316       2473 YMVPAHWVVLERLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred             hcCcceEeeecccCCCCCCccCHhhcCCCc
Confidence            999999999999999999999999997643

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=8.9e-44  Score=344.76  Aligned_cols=314  Identities=22%  Similarity=0.294  Sum_probs=240.4

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEe----C-----CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVY----N-----NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQ   82 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~----~-----~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~   82 (330)
                      ....|+.++|.+.++.+|+++|+..    .     .+.+||+||.++++++|++|.+.|+++||+|+++++|+++|++.+
T Consensus        41 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~  120 (651)
T PLN02736         41 PEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVD  120 (651)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHH
Confidence            3446899999999999999999942    1     146999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH---------------------------------
Q 048729           83 FGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA---------------------------------  129 (330)
Q Consensus        83 la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~---------------------------------  129 (330)
                      +||+++|++++|+++.++++++.++++..++++++++......+...                                 
T Consensus       121 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  200 (651)
T PLN02736        121 HACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVT  200 (651)
T ss_pred             HHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEE
Confidence            99999999999999999999999999999999999876433221100                                 


Q ss_pred             -------h----cc----Cc------------------------------------------------------------
Q 048729          130 -------L----SL----FP------------------------------------------------------------  134 (330)
Q Consensus       130 -------~----~~----~~------------------------------------------------------------  134 (330)
                             .    ..    .+                                                            
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~  280 (651)
T PLN02736        201 YSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQ  280 (651)
T ss_pred             HHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHH
Confidence                   0    00    00                                                            


Q ss_pred             -------------------------------------------hHH----------------------------------
Q 048729          135 -------------------------------------------QRA----------------------------------  137 (330)
Q Consensus       135 -------------------------------------------~~~----------------------------------  137 (330)
                                                                 ...                                  
T Consensus       281 ~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (651)
T PLN02736        281 IVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSP  360 (651)
T ss_pred             HHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence                                                       000                                  


Q ss_pred             --H----------H----------------------hhccCC---cccCcee--------------------------EE
Q 048729          138 --R----------L----------------------KARQGV---KTVGLAE--------------------------VD  154 (330)
Q Consensus       138 --~----------~----------------------~~~~G~---~~~g~te--------------------------~~  154 (330)
                        .          .                      ....|.   ..||.||                          ++
T Consensus       361 ~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~  440 (651)
T PLN02736        361 MWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVK  440 (651)
T ss_pred             hHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCCCCCCCCccCCccCceEEE
Confidence              0          0                      000111   1245554                          44


Q ss_pred             EeCCCCCcccCCC-CceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEe-CCee
Q 048729          155 VVNPETGESVKRD-GVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIIS-GGEN  232 (330)
Q Consensus       155 i~d~~~g~~~~~~-~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~-~G~~  232 (330)
                      |+|.+++.....+ ....|||+++|++++.|||++|+.+.+.|..+|||+|||+|++|+||+++|+||.+|+||+ +|++
T Consensus       441 i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~  520 (651)
T PLN02736        441 LVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY  520 (651)
T ss_pred             EEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcE
Confidence            4442111111000 0035999999999999999999999998877999999999999999999999999999996 7999


Q ss_pred             cCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCccc----CCCCCHHHHHHHH------------------
Q 048729          233 ICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLEL----TKKPTEKEIIEYC------------------  290 (330)
Q Consensus       233 v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~l~~~l------------------  290 (330)
                      |+|.+||+.|.+||.|.+++|++..   .++.++|+|++..+.-.    ....+..++.+.+                  
T Consensus       521 V~p~eIE~~l~~~p~V~~a~V~g~~---~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  597 (651)
T PLN02736        521 IAPEKIENVYAKCKFVAQCFVYGDS---LNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGR  597 (651)
T ss_pred             echHHHHHHHhcCCCeeEEEEEecC---CCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999832   45689999998653100    0001111222222                  


Q ss_pred             HhcCCCCCCCceEEEccCCC------CCCCCcccHHHHHHHhhh
Q 048729          291 RARLPRYMVPRKVVFSEELP------KTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       291 ~~~l~~~~~p~~~~~v~~lP------~t~~GKv~r~~l~~~~~~  328 (330)
                      +.+|+.+++|.+|.++++.|      +|++||++|++|++.|++
T Consensus       598 ~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~  641 (651)
T PLN02736        598 EAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAK  641 (651)
T ss_pred             hcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHH
Confidence            13699999999999999886      699999999999998864

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=5e-43  Score=334.56  Aligned_cols=303  Identities=28%  Similarity=0.405  Sum_probs=259.0

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      .++.++|.+.++.+|+++|+++.++++||+||.+.+.++|++|. +.|+++||+|+++++|++++++.++||+++|++++
T Consensus        25 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v  104 (560)
T PRK08751         25 RTVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVV  104 (560)
T ss_pred             CcHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEe
Confidence            58899999999999999999999999999999999999999997 68999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH--------------------------------------------
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA--------------------------------------------  129 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~--------------------------------------------  129 (330)
                      |+++.++.+++.+++...+++++++++.+...+...                                            
T Consensus       105 ~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (560)
T PRK08751        105 NVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRING  184 (560)
T ss_pred             ccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccCCCc
Confidence            999999999999999999999988754221110000                                            


Q ss_pred             ------------hcc----------C---------------------------------------------------c--
Q 048729          130 ------------LSL----------F---------------------------------------------------P--  134 (330)
Q Consensus       130 ------------~~~----------~---------------------------------------------------~--  134 (330)
                                  ...          .                                                   +  
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (560)
T PRK08751        185 AIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLY  264 (560)
T ss_pred             cccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChH
Confidence                        000          0                                                   0  


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       265 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~  344 (560)
T PRK08751        265 HIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRS  344 (560)
T ss_pred             HHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCCCHH
Confidence                                                                                            


Q ss_pred             hHH-------------------------------HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccc
Q 048729          135 QRA-------------------------------RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTV  183 (330)
Q Consensus       135 ~~~-------------------------------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~  183 (330)
                      ...                               ....++|.++.|. ++.++|+ +|++++.+  +.|||+++|+.++.
T Consensus       345 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~-~v~i~d~-~~~~~~~g--~~Gel~v~~~~~~~  420 (560)
T PRK08751        345 VAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPST-DACIKDD-AGTVLAIG--EIGELCIKGPQVMK  420 (560)
T ss_pred             HHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCc-eEEEECC-CCCCCCCC--CceEEEEecCccch
Confidence            000                               0012334555554 6677776 78888887  78999999999999


Q ss_pred             cccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCc
Q 048729          184 GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGE  263 (330)
Q Consensus       184 gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  263 (330)
                      ||+++++.+.+.+..+|||+|||++++|++|.+++.||.||++|++|++|+|.+||+.+..+|+|.+++|++.++...++
T Consensus       421 gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge  500 (560)
T PRK08751        421 GYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGE  500 (560)
T ss_pred             hhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCc
Confidence            99999999988887789999999999999999999999999999999999999999999999999999999998877777


Q ss_pred             eeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHh
Q 048729          264 IPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFA  326 (330)
Q Consensus       264 ~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~  326 (330)
                      .+.++++... ..    .+.+++.+.++++++++.+|..++++++||+|++||++|++|++..
T Consensus       501 ~~~~~v~~~~-~~----~~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~~  558 (560)
T PRK08751        501 IVKVVIVKKD-PA----LTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDAA  558 (560)
T ss_pred             eEEEEEEcCC-CC----CCHHHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHhh
Confidence            7777776543 22    5678999999999999999999999999999999999999998864

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.8e-43  Score=335.60  Aligned_cols=315  Identities=30%  Similarity=0.485  Sum_probs=256.6

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeC---CeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYN---NTTYTWSETHRRCLQVASSLSS-VGIQRGHVVSVVAPNVPSMYELQFGVPM   87 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~---~~~~T~~el~~~~~~~a~~L~~-~g~~~gd~V~~~~~~~~~~~~~~la~~~   87 (330)
                      ..+.|+.++|.+.+..+|+++|+++.   ++.+||+||.+++.++|++|.+ .|+++||+|+++++|++++++.++||++
T Consensus         7 ~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~   86 (576)
T PRK05620          7 DVPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVAC   86 (576)
T ss_pred             cCCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence            34579999999999999999999874   3789999999999999999985 8999999999999999999999999999


Q ss_pred             cCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc------------------------------------
Q 048729           88 SGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS------------------------------------  131 (330)
Q Consensus        88 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~------------------------------------  131 (330)
                      +|++++++++.++.+.+.++++..+++++++++.....+.....                                    
T Consensus        87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (576)
T PRK05620         87 MGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALL  166 (576)
T ss_pred             cCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHh
Confidence            99999999999999999999999999999987654332211000                                    


Q ss_pred             ----------cC-----c--------------------------------------------------------------
Q 048729          132 ----------LF-----P--------------------------------------------------------------  134 (330)
Q Consensus       132 ----------~~-----~--------------------------------------------------------------  134 (330)
                                ..     .                                                              
T Consensus       167 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l  246 (576)
T PRK05620        167 DGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAF  246 (576)
T ss_pred             hcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHHHH
Confidence                      00     0                                                              


Q ss_pred             -------------------------------------------------------------------hHHHHhhccCC--
Q 048729          135 -------------------------------------------------------------------QRARLKARQGV--  145 (330)
Q Consensus       135 -------------------------------------------------------------------~~~~~~~~~G~--  145 (330)
                                                                                         ....+....|.  
T Consensus       247 ~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~  326 (576)
T PRK05620        247 MSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERYGVDV  326 (576)
T ss_pred             hcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHhCCce
Confidence                                                                               00000001111  


Q ss_pred             -cccCceeE----------------------------------EEeCCCCCcccCCCCceecEEEEecCcccccccCCch
Q 048729          146 -KTVGLAEV----------------------------------DVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKE  190 (330)
Q Consensus       146 -~~~g~te~----------------------------------~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~  190 (330)
                       ..||.||.                                  +++|+  |..++...+..|||+++|++++.||+++++
T Consensus       327 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~--g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~  404 (576)
T PRK05620        327 VHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND--GQVMESTDRNEGEIQVRGNWVTASYYHSPT  404 (576)
T ss_pred             eeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC--CccccCCCCCceEEEEEcCcccccccCCcc
Confidence             22455543                                  33332  333332222679999999999999999987


Q ss_pred             hh----------------hccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEE
Q 048729          191 AT----------------RRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV  254 (330)
Q Consensus       191 ~~----------------~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~  254 (330)
                      .+                ...+..+|||+|||+++++++|.+++.||.+|++|++|.+|++.+||+.|.+||.|.+++|+
T Consensus       405 ~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv  484 (576)
T PRK05620        405 EEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVI  484 (576)
T ss_pred             ccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEE
Confidence            76                22244478999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       255 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      +.+++..++.+++++++.++.... ....+++++.++++|+++.+|+.|++++++|+|++||++|++|++++++.
T Consensus       485 ~~~~~~~g~~~~a~v~~~~~~~~~-~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~~  558 (576)
T PRK05620        485 GYPDDKWGERPLAVTVLAPGIEPT-RETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHLADG  558 (576)
T ss_pred             eccCCCcCceeEEEEEecCCCCcc-cccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcHHHHHHHHhcC
Confidence            999888788888888887764321 13578999999999999999999999999999999999999999998753

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4e-43  Score=339.45  Aligned_cols=308  Identities=23%  Similarity=0.294  Sum_probs=248.3

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeC---------CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYN---------NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFG   84 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~---------~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la   84 (330)
                      ..++.++|.+.++.+|+++|+++.         .+.+||+||.+.++++|++|.+. +++||+|+++++|++++++++||
T Consensus        20 ~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA   98 (631)
T PRK07769         20 NTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFG   98 (631)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHH
Confidence            358999999999999999999863         25799999999999999999976 89999999999999999999999


Q ss_pred             hhhcCcEEeec-CCCCC--HHHHHHHHHhcCCcEEEEcccchHHHHHHh----------------------cc------C
Q 048729           85 VPMSGAILNNI-NTRLD--AHTLSVLLQHSESKLVFVDHLHTYLLLEAL----------------------SL------F  133 (330)
Q Consensus        85 ~~~~G~~~~~l-~~~~~--~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~----------------------~~------~  133 (330)
                      |+++|++++|+ ++..+  .+++.++++..+++++++++.....+....                      ..      .
T Consensus        99 ~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (631)
T PRK07769         99 ALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPDEVGATWVPPEAN  178 (631)
T ss_pred             HHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccccccccccccCCCCCC
Confidence            99999999999 44443  578999999999999999865433221100                      00      0


Q ss_pred             c--------------------------------------------------------------------------h-HH-
Q 048729          134 P--------------------------------------------------------------------------Q-RA-  137 (330)
Q Consensus       134 ~--------------------------------------------------------------------------~-~~-  137 (330)
                      .                                                                          . .. 
T Consensus       179 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~  258 (631)
T PRK07769        179 EDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFV  258 (631)
T ss_pred             CCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHH
Confidence            0                                                                          0 00 


Q ss_pred             --------------------------------H---Hh----------------------------------hccC----
Q 048729          138 --------------------------------R---LK----------------------------------ARQG----  144 (330)
Q Consensus       138 --------------------------------~---~~----------------------------------~~~G----  144 (330)
                                                      .   ..                                  ...|    
T Consensus       259 ~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~  338 (631)
T PRK07769        259 RRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPT  338 (631)
T ss_pred             hCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChh
Confidence                                            0   00                                  0001    


Q ss_pred             --CcccCceeEE-----------------------------------------------------EeCCCCCcccCCCCc
Q 048729          145 --VKTVGLAEVD-----------------------------------------------------VVNPETGESVKRDGV  169 (330)
Q Consensus       145 --~~~~g~te~~-----------------------------------------------------i~d~~~g~~~~~~~~  169 (330)
                        .+.||.||+.                                                     |+|+++|++++.+  
T Consensus       339 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~g--  416 (631)
T PRK07769        339 AIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDG--  416 (631)
T ss_pred             hcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCC--
Confidence              1347777642                                                     3343356677777  


Q ss_pred             eecEEEEecCcccccccCCchhhhccccC-----------------CCeEEeCceEEEecCceEEEEecCCCeEEeCCee
Q 048729          170 SLGEVVLRGGCVTVGYFKDKEATRRCISD-----------------NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGEN  232 (330)
Q Consensus       170 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-----------------~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~  232 (330)
                      +.|||+++|++++.|||++++.+.+.|..                 +|||+|||+|+++ +|+++|+||.||+||++|++
T Consensus       417 e~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~  495 (631)
T PRK07769        417 QIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRN  495 (631)
T ss_pred             CEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECCee
Confidence            88999999999999999999988877742                 4899999999996 99999999999999999999


Q ss_pred             cCHHHHHHHHhc-CcCcce--EEEEeecC-------------------CCCCceeEEEEEecCCcccCCCCCHHHHHHHH
Q 048729          233 ICSAEVESVLYS-ITAVNE--AAVVARPD-------------------MFWGEIPCAFVSLKRDLELTKKPTEKEIIEYC  290 (330)
Q Consensus       233 v~~~~iE~~l~~-~~~v~~--~~v~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l  290 (330)
                      |+|.+||++|.+ ||.|.+  ++|++.++                   +..++++++++++.++...   .+.++|.+++
T Consensus       496 V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~---~~~~~l~~~~  572 (631)
T PRK07769        496 HYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHK---LDPQPIADDI  572 (631)
T ss_pred             eCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCcccc---ccHHHHHHHH
Confidence            999999999996 899998  89998887                   4567889999998876321   5678999999


Q ss_pred             HhcCCC-CC-CCceEEEcc--CCCCCCCCcccHHHHHHHhhh
Q 048729          291 RARLPR-YM-VPRKVVFSE--ELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       291 ~~~l~~-~~-~p~~~~~v~--~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++++.. +. .|+.+.+++  +||+|++||++|++|++.+.+
T Consensus       573 ~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~  614 (631)
T PRK07769        573 RAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLD  614 (631)
T ss_pred             HHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHc
Confidence            999985 56 588888887  799999999999999998754

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7e-43  Score=331.93  Aligned_cols=307  Identities=32%  Similarity=0.527  Sum_probs=261.1

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeC--C--eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhc
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYN--N--TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMS   88 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~--~--~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~   88 (330)
                      .+.++.++|...+..+|+.+++.+.  +  +.+||.||.+.++++|++|.+.|+++||+|+++++|+++++.+++||+++
T Consensus         8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~   87 (539)
T PRK07008          8 MPLLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGS   87 (539)
T ss_pred             CCCCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence            3468999999999999999998752  2  68999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh------------------------------------c-
Q 048729           89 GAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL------------------------------------S-  131 (330)
Q Consensus        89 G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~------------------------------------~-  131 (330)
                      |++++|+++.++++++..+++..+++++++++.+...+....                                    . 
T Consensus        88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (539)
T PRK07008         88 GAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQDGD  167 (539)
T ss_pred             CcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhcccCCC
Confidence            999999999999999999999999999887654322111000                                    0 


Q ss_pred             ----cC-c------------------------------------------------------------------------
Q 048729          132 ----LF-P------------------------------------------------------------------------  134 (330)
Q Consensus       132 ----~~-~------------------------------------------------------------------------  134 (330)
                          .. .                                                                        
T Consensus       168 ~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~  247 (539)
T PRK07008        168 YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKL  247 (539)
T ss_pred             cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceE
Confidence                00 0                                                                        


Q ss_pred             -------------------------------------------------------------hHH----------------
Q 048729          135 -------------------------------------------------------------QRA----------------  137 (330)
Q Consensus       135 -------------------------------------------------------------~~~----------------  137 (330)
                                                                                   ...                
T Consensus       248 ~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~  327 (539)
T PRK07008        248 VLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGM  327 (539)
T ss_pred             EEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhCCceeccccc
Confidence                                                                         000                


Q ss_pred             -------------------------HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhh
Q 048729          138 -------------------------RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEAT  192 (330)
Q Consensus       138 -------------------------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~  192 (330)
                                               ....+.|.|++|. +++|+|+ ++.+++.++.+.|||+++|++++.||++++.. 
T Consensus       328 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~-~~~i~d~-~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~-  404 (539)
T PRK07008        328 TEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGV-DMKIVGD-DGRELPWDGKAFGDLQVRGPWVIDRYFRGDAS-  404 (539)
T ss_pred             ccccccceecccccccccCCchhhhhhcccCCccccce-EEEEECC-CCCccCCCCCcceEEEEeCCccchhhcCChhh-
Confidence                                     0013456777775 8888887 78878765435799999999999999998843 


Q ss_pred             hccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEec
Q 048729          193 RRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLK  272 (330)
Q Consensus       193 ~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  272 (330)
                        .+. +|||+|||++++|+||.+++.||.||++|.+|.+|+|.+||+.+..+|.|.++++++.+++..++.++++|+..
T Consensus       405 --~~~-~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~  481 (539)
T PRK07008        405 --PLV-DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKR  481 (539)
T ss_pred             --hhc-CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeC
Confidence              333 78999999999999999999999999999999999999999999999999999999999887778888888877


Q ss_pred             CCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          273 RDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       273 ~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      ++..    .+.+++.+++++++++|..|..+++++++|+|++||++|++|++++.+.
T Consensus       482 ~~~~----~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~  534 (539)
T PRK07008        482 PGAE----VTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDY  534 (539)
T ss_pred             CCCc----cCHHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence            6544    5778999999999999999999999999999999999999999998764

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=5.1e-43  Score=331.18  Aligned_cols=301  Identities=28%  Similarity=0.409  Sum_probs=260.9

Q ss_pred             CHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeec
Q 048729           16 TTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNI   95 (330)
Q Consensus        16 ~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l   95 (330)
                      ++.++|...++.+|+++|+.+.++++||+||.+.+.+++++|.+.|+++||+|+++++|+.+++++++||+.+|++++|+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l   80 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI   80 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc-----------------------------------c-----C--
Q 048729           96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS-----------------------------------L-----F--  133 (330)
Q Consensus        96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-----------------------------------~-----~--  133 (330)
                      ++.++.+.+..+++..+++++++++.....+.....                                   .     .  
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (515)
T TIGR03098        81 NPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGDADPPHPVID  160 (515)
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhccccccccCCCCc
Confidence            999999999999999999999987654332211000                                   0     0  


Q ss_pred             ---c----------------------------------------------------------------------------
Q 048729          134 ---P----------------------------------------------------------------------------  134 (330)
Q Consensus       134 ---~----------------------------------------------------------------------------  134 (330)
                         .                                                                            
T Consensus       161 ~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~  240 (515)
T TIGR03098       161 SDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDYLLPRD  240 (515)
T ss_pred             CCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcCCCCHHH
Confidence               0                                                                            


Q ss_pred             -------------------------------------------------hH-----------------------------
Q 048729          135 -------------------------------------------------QR-----------------------------  136 (330)
Q Consensus       135 -------------------------------------------------~~-----------------------------  136 (330)
                                                                       ..                             
T Consensus       241 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  320 (515)
T TIGR03098       241 VLKALEKHGITGLAAVPPLWAQLAQLDWPESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPP  320 (515)
T ss_pred             HHHHHHHcCCceEecChHHHHHHHhcccCCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEeccc
Confidence                                                             00                             


Q ss_pred             ---HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC-----------CCeE
Q 048729          137 ---ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD-----------NGWF  202 (330)
Q Consensus       137 ---~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-----------~g~~  202 (330)
                         .....++|.+++|+ +++++++ ++++++.+  +.|||+++|+.++.||+++++.+...|..           ++||
T Consensus       321 ~~~~~~~~~vG~~~~~~-~~~i~~~-~~~~~~~~--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (515)
T TIGR03098       321 EEVDRRPDSIGKAIPNA-EVLVLRE-DGSECAPG--EEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAV  396 (515)
T ss_pred             ccccCCCCCcceecCCC-EEEEECC-CCCCCCCC--CceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccce
Confidence               00112456666675 7788887 78888877  88999999999999999999877665532           3489


Q ss_pred             EeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCC
Q 048729          203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPT  282 (330)
Q Consensus       203 ~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  282 (330)
                      +|||+|++|++|.+++.||.+|++|++|.+|+|.+||+.+.++|.|.+++|++..++..+++++++++...+..    .+
T Consensus       397 ~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~----~~  472 (515)
T TIGR03098       397 WSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEE----LD  472 (515)
T ss_pred             eccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCC----CC
Confidence            99999999999999999999999999999999999999999999999999999998888889988887655544    57


Q ss_pred             HHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHH
Q 048729          283 EKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE  324 (330)
Q Consensus       283 ~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~  324 (330)
                      .+++.+.++++|+++++|..++++++||+|++||++|++|++
T Consensus       473 ~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       473 RAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA  514 (515)
T ss_pred             HHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence            789999999999999999999999999999999999999975

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-42  Score=330.14  Aligned_cols=308  Identities=31%  Similarity=0.489  Sum_probs=259.6

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEe--C--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhc
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVY--N--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMS   88 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~--~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~   88 (330)
                      .++++.++|...++.+||++++++  .  .+++||+||.+.++++|++|.+.|+++||+|+++++|+++++..++||+.+
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~   87 (542)
T PRK06018          8 WPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGI   87 (542)
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhc
Confidence            367999999999999999999985  2  378999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh--------------------------------------
Q 048729           89 GAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL--------------------------------------  130 (330)
Q Consensus        89 G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~--------------------------------------  130 (330)
                      |++++|+++.++.+.+.++++..++++++++..+...+.+..                                      
T Consensus        88 G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (542)
T PRK06018         88 GAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEADG  167 (542)
T ss_pred             CeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccCCc
Confidence            999999999999999999999999999987643221111000                                      


Q ss_pred             ----ccCc------------------------------------------------------------------------
Q 048729          131 ----SLFP------------------------------------------------------------------------  134 (330)
Q Consensus       131 ----~~~~------------------------------------------------------------------------  134 (330)
                          ....                                                                        
T Consensus       168 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~g~~  247 (542)
T PRK06018        168 DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTK  247 (542)
T ss_pred             ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhhcCce
Confidence                0000                                                                        


Q ss_pred             --------------------------------------------------------------hHHHH-------------
Q 048729          135 --------------------------------------------------------------QRARL-------------  139 (330)
Q Consensus       135 --------------------------------------------------------------~~~~~-------------  139 (330)
                                                                                    ....+             
T Consensus       248 ~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~  327 (542)
T PRK06018        248 LVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGM  327 (542)
T ss_pred             EEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHhCCCeEeeecc
Confidence                                                                          00000             


Q ss_pred             ---------------------------hhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhh
Q 048729          140 ---------------------------KARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEAT  192 (330)
Q Consensus       140 ---------------------------~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~  192 (330)
                                                 ..+.|.|.+|. +++++|+ +++.++.++...|||+++|++++.||++..   
T Consensus       328 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~-~i~v~d~-~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---  402 (542)
T PRK06018        328 TEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGV-EMKITDD-AGKELPWDGKTFGRLKVRGPAVAAAYYRVD---  402 (542)
T ss_pred             cccCcccccccCccccccCCchhhhhccccCCCCCCCc-EEEEECC-CCCCCCCCCCceeEEEEecCCcchhhhcCc---
Confidence                                       01235555564 6777777 777777654367999999999999999832   


Q ss_pred             hccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEec
Q 048729          193 RRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLK  272 (330)
Q Consensus       193 ~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  272 (330)
                      ...+..+|||+|||+++++++|.+++.||.+|++|++|++|++.+||+.+.++|+|.+++|++..++..++.+.+++++.
T Consensus       403 ~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  482 (542)
T PRK06018        403 GEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLK  482 (542)
T ss_pred             ccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeC
Confidence            23344589999999999999999999999999999999999999999999999999999999999887788888888887


Q ss_pred             CCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          273 RDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       273 ~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      ++..    .+.+++.+.++.+++.+.+|..+.++++||+|++||++|++|++.+.+.
T Consensus       483 ~~~~----~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~~  535 (542)
T PRK06018        483 PGET----ATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKDY  535 (542)
T ss_pred             CCCC----CCHHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhcc
Confidence            7654    6778999999999999999999999999999999999999999998763

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.4e-43  Score=367.73  Aligned_cols=305  Identities=19%  Similarity=0.245  Sum_probs=259.5

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      .+..++.++|.++++.+|+++|+++.++++||+||.+.+.++|++|.+.|+++||+|+++++++++++++++||+++|++
T Consensus       455 ~~~~~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~  534 (1296)
T PRK10252        455 IPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAA  534 (1296)
T ss_pred             CCcCCHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH--------------hc--c----Cc-----------------
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA--------------LS--L----FP-----------------  134 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~--------------~~--~----~~-----------------  134 (330)
                      ++|+++.++.+++.++++..++++++++......+...              ..  .    .+                 
T Consensus       535 ~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PK  614 (1296)
T PRK10252        535 WLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPDLTSLCYNAPLAPQGAAPLQLSQPHHTAYIIFTSGSTGRPK  614 (1296)
T ss_pred             EEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCCCceeeecccccccccCCCCCCCCCCCeEEEEECCCCCCCCC
Confidence            99999999999999999999999999876543322110              00  0    00                 


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       615 gV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~  694 (1296)
T PRK10252        615 GVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTH  694 (1296)
T ss_pred             EEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEE
Confidence                                                                                            


Q ss_pred             --------------------------------------hHH-------------------------------------HH
Q 048729          135 --------------------------------------QRA-------------------------------------RL  139 (330)
Q Consensus       135 --------------------------------------~~~-------------------------------------~~  139 (330)
                                                            ...                                     ..
T Consensus       695 ~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~  774 (1296)
T PRK10252        695 FVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGS  774 (1296)
T ss_pred             eCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCC
Confidence                                                  000                                     00


Q ss_pred             hhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC------CCeEEeCceEEEecC
Q 048729          140 KARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD------NGWFYTGDIGVMHAD  213 (330)
Q Consensus       140 ~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~g~~~TGD~~~~~~~  213 (330)
                      ..++|.|++|. ++.|+|+ ++++++.+  +.|||+++|+.++.||+++|+.+.+.|..      ++||+|||+|+++++
T Consensus       775 ~~~iG~p~~~~-~~~i~d~-~~~~~~~g--~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~  850 (1296)
T PRK10252        775 SVPIGYPVWNT-GLRILDA-RMRPVPPG--VAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDD  850 (1296)
T ss_pred             CCCcccccCCC-EEEEECC-CCCCCCCC--CceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCC
Confidence            12345566664 6677776 78888888  88999999999999999999998888753      349999999999999


Q ss_pred             ceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeec----C--CCCCceeEEEEEecCCcccCCCCCHHHHH
Q 048729          214 GYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARP----D--MFWGEIPCAFVSLKRDLELTKKPTEKEII  287 (330)
Q Consensus       214 G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~----~--~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  287 (330)
                      |.++++||.|++||++|++|++.+||++|.++|+|.+++|+...    +  .....+++++++...+..    .+.++++
T Consensus       851 G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~----~~~~~l~  926 (1296)
T PRK10252        851 GAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLP----LDTSALQ  926 (1296)
T ss_pred             CcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCC----CCHHHHH
Confidence            99999999999999999999999999999999999999887652    1  111237888888776643    5778999


Q ss_pred             HHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHH
Q 048729          288 EYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE  324 (330)
Q Consensus       288 ~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~  324 (330)
                      +.++++|+.|++|..++.+++||+|++||+||++|.+
T Consensus       927 ~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~  963 (1296)
T PRK10252        927 AQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPL  963 (1296)
T ss_pred             HHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCC
Confidence            9999999999999999999999999999999999865

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=5.4e-43  Score=332.48  Aligned_cols=305  Identities=27%  Similarity=0.425  Sum_probs=258.1

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      ...++.++|.+.++  |+++|+++.++++||+||.+.+.++|++|.+.|+++||+|+++++|++++++.++||+++|+++
T Consensus        23 ~~~~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~  100 (536)
T PRK10946         23 QDLPLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAP  100 (536)
T ss_pred             cCccHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEE
Confidence            35689999988887  9999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccc--------hHHHHH------------------------Hhc-c-----Cc
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLH--------TYLLLE------------------------ALS-L-----FP  134 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~--------~~~~~~------------------------~~~-~-----~~  134 (330)
                      +++.......++..+++..++++++++...        ...+..                        ... .     ..
T Consensus       101 v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (536)
T PRK10946        101 VNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDAINHPAEDFTATPSP  180 (536)
T ss_pred             ecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCCCccHHHHhhCcccccccCCCC
Confidence            777777777788889999999998876431        000000                        000 0     00


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       181 ~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~  260 (536)
T PRK10946        181 ADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPS  260 (536)
T ss_pred             CCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCC
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------hHH----------------------
Q 048729          135 -------------------------------------------------------QRA----------------------  137 (330)
Q Consensus       135 -------------------------------------------------------~~~----------------------  137 (330)
                                                                             ...                      
T Consensus       261 ~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~  340 (536)
T PRK10946        261 ATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVN  340 (536)
T ss_pred             HHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeeccccccee
Confidence                                                                   000                      


Q ss_pred             ---------HHhhccCCcc-cCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCce
Q 048729          138 ---------RLKARQGVKT-VGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDI  207 (330)
Q Consensus       138 ---------~~~~~~G~~~-~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~  207 (330)
                               ....+.|.|+ ++ ++++++|+ +|++++.+  +.|||+++|+.++.||+++++.+...|..+|||+|||+
T Consensus       341 ~~~~~~~~~~~~~~~G~p~~~~-~~v~i~d~-~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl  416 (536)
T PRK10946        341 YTRLDDSDERIFTTQGRPMSPD-DEVWVADA-DGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDL  416 (536)
T ss_pred             eecCCCccccccccCCcccCCC-ceEEEECC-CCCCCCCC--CccEEEEecCccchhhcCCcccchhhcccCCceecCce
Confidence                     0012334444 33 36667776 78888887  88999999999999999999999888877899999999


Q ss_pred             EEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHH
Q 048729          208 GVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEII  287 (330)
Q Consensus       208 ~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  287 (330)
                      +++|++|++++.||.+|++|++|++|+|.+||+.|.++|+|.++++++.+++..++.+++++++.++      .+..++.
T Consensus       417 ~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~------~~~~~l~  490 (536)
T PRK10946        417 VSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP------LKAVQLR  490 (536)
T ss_pred             EEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC------CCHHHHH
Confidence            9999999999999999999999999999999999999999999999999988778889999887664      4578999


Q ss_pred             HHHHhc-CCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          288 EYCRAR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       288 ~~l~~~-l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      +.+++. +++|++|..+.+++++|+|++||++|++|++++.++
T Consensus       491 ~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~  533 (536)
T PRK10946        491 RFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR  533 (536)
T ss_pred             HHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhh
Confidence            999886 999999999999999999999999999999998764

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=2e-43  Score=368.23  Aligned_cols=308  Identities=22%  Similarity=0.277  Sum_probs=252.3

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEe---------CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVY---------NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFG   84 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~---------~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la   84 (330)
                      ..++.++|.++++.+|+++|+++         .++++||+||.+.++++|++|.+.|+++||+|++++++++++++++||
T Consensus       235 ~~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA  314 (1389)
T TIGR03443       235 RGAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMG  314 (1389)
T ss_pred             cCcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHH
Confidence            45799999999999999999985         357899999999999999999999999999999999999999999999


Q ss_pred             hhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccc---hHHHH----------------------------------
Q 048729           85 VPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLH---TYLLL----------------------------------  127 (330)
Q Consensus        85 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~---~~~~~----------------------------------  127 (330)
                      |+++|++++|+++.++++++.++++..+++++++....   ...+.                                  
T Consensus       315 ~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (1389)
T TIGR03443       315 VLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEGGET  394 (1389)
T ss_pred             HHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccccccccccc
Confidence            99999999999999999999999999999998875321   00000                                  


Q ss_pred             HH----------h-------ccCc--------------------------------------------------------
Q 048729          128 EA----------L-------SLFP--------------------------------------------------------  134 (330)
Q Consensus       128 ~~----------~-------~~~~--------------------------------------------------------  134 (330)
                      ..          .       ....                                                        
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~i  474 (1389)
T TIGR03443       395 DVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRDM  474 (1389)
T ss_pred             cccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHHH
Confidence            00          0       0000                                                        


Q ss_pred             ----------------------------------------------------------------------hHHH------
Q 048729          135 ----------------------------------------------------------------------QRAR------  138 (330)
Q Consensus       135 ----------------------------------------------------------------------~~~~------  138 (330)
                                                                                            ....      
T Consensus       475 ~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~  554 (1389)
T TIGR03443       475 FTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQATTPIPSLHHAFFVGDILTKRDCLRLQTLAE  554 (1389)
T ss_pred             HHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcccccCCCccEEEEecccCCHHHHHHHHHhCC
Confidence                                                                                  0000      


Q ss_pred             ------------------------------------HhhccCCcccCceeEEEeCCC-CCcccCCCCceecEEEEecCcc
Q 048729          139 ------------------------------------LKARQGVKTVGLAEVDVVNPE-TGESVKRDGVSLGEVVLRGGCV  181 (330)
Q Consensus       139 ------------------------------------~~~~~G~~~~g~te~~i~d~~-~g~~~~~~~~~~Gel~v~~~~~  181 (330)
                                                          ...++|.|++|. ++.|+|+. .+++++.+  +.|||+|+|+++
T Consensus       555 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~~G--~~GEL~i~G~~v  631 (1389)
T TIGR03443       555 NVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNV-QLLVVNRNDRTQTCGVG--EVGEIYVRAGGL  631 (1389)
T ss_pred             CCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCC-EEEEECCccCCCcCCCC--CceEEEeccccc
Confidence                                                011234555553 55666642 34667777  889999999999


Q ss_pred             cccccCCchhhhcccc----------------------------CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeec
Q 048729          182 TVGYFKDKEATRRCIS----------------------------DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENI  233 (330)
Q Consensus       182 ~~gy~~~~~~~~~~~~----------------------------~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v  233 (330)
                      +.||+++|+.+.+.|.                            .++||+|||+|++++||.++|+||.||+||++|++|
T Consensus       632 ~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI  711 (1389)
T TIGR03443       632 AEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRI  711 (1389)
T ss_pred             chhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEe
Confidence            9999999999887773                            257999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCccc-C---------------------CCCCHHHHHHHHH
Q 048729          234 CSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLEL-T---------------------KKPTEKEIIEYCR  291 (330)
Q Consensus       234 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~---------------------~~~~~~~l~~~l~  291 (330)
                      +|.+||++|.+||.|.+++|++..++..++.+++++++..+... .                     .....+++++.++
T Consensus       712 ~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  791 (1389)
T TIGR03443       712 ELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLK  791 (1389)
T ss_pred             cHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHH
Confidence            99999999999999999999988877777889999887632110 0                     0012578999999


Q ss_pred             hcCCCCCCCceEEEccCCCCCCCCcccHHHHHH
Q 048729          292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE  324 (330)
Q Consensus       292 ~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~  324 (330)
                      ++|+.|++|..++++++||+|++||+||++|++
T Consensus       792 ~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~  824 (1389)
T TIGR03443       792 KKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPF  824 (1389)
T ss_pred             hhCCcccCCceEEEcccCCCCCCccccHhhcCC
Confidence            999999999999999999999999999999964

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=8.2e-44  Score=399.73  Aligned_cols=301  Identities=24%  Similarity=0.291  Sum_probs=265.0

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      ..++.++|.++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|++++++++++++++||++++|++++
T Consensus       510 ~~~~~~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~v  589 (5163)
T PRK12316        510 QRGVHRLFEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYV  589 (5163)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEe
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH--------------hcc----------Cc---------------
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA--------------LSL----------FP---------------  134 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~--------------~~~----------~~---------------  134 (330)
                      |+++.++.+++.++++..++++++++......+...              ...          .+               
T Consensus       590 pld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~  669 (5163)
T PRK12316        590 PLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRPAAWLEGYSEENPGTELNPENLAYVIYTSGSTGK  669 (5163)
T ss_pred             ccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccCceEEEecCcchhhccCCCCCCCCCCCCCCeEEEEECCCcCCC
Confidence            999999999999999999999999976543221100              000          00               


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       670 PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~  749 (5163)
T PRK12316        670 PKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDT  749 (5163)
T ss_pred             CCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeE
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------hH------------HHHhhccCC
Q 048729          135 ---------------------------------------------------------QR------------ARLKARQGV  145 (330)
Q Consensus       135 ---------------------------------------------------------~~------------~~~~~~~G~  145 (330)
                                                                               +.            .....++|.
T Consensus       750 ~~~~Ps~~~~l~~~~~~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~  829 (5163)
T PRK12316        750 LHFVPSMLQAFLQDEDVASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGR  829 (5163)
T ss_pred             EEeCHHHHHHHHhccccccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCcc
Confidence                                                                     00            001234677


Q ss_pred             cccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC------CCeEEeCceEEEecCceEEEE
Q 048729          146 KTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD------NGWFYTGDIGVMHADGYVEIK  219 (330)
Q Consensus       146 ~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~g~~~TGD~~~~~~~G~l~~~  219 (330)
                      |++|. +++|+|+ +++++|.+  +.|||+|+|++++.||+++|+.+.+.|..      ++||+|||+|++++||.++|+
T Consensus       830 p~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~  905 (5163)
T PRK12316        830 PIANL-ACYILDA-NLEPVPVG--VLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYA  905 (5163)
T ss_pred             ccCCC-EEEEECC-CCCCCCCC--CceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEee
Confidence            77785 8888888 88999988  88999999999999999999999887742      459999999999999999999


Q ss_pred             ecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCC
Q 048729          220 DRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMV  299 (330)
Q Consensus       220 GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~  299 (330)
                      ||.||+||++|++|+|.+||++|.+||+|.+++|++.+    ++.++++|+..++..    ...+++++.++++|+.|++
T Consensus       906 GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~----~~~~~l~~~l~~~Lp~y~v  977 (5163)
T PRK12316        906 GRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGG----DWREALKAHLAASLPEYMV  977 (5163)
T ss_pred             cccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCC----CCHHHHHHHHHhhCCCccC
Confidence            99999999999999999999999999999999999986    568999999877644    5678999999999999999


Q ss_pred             CceEEEccCCCCCCCCcccHHHHHHHh
Q 048729          300 PRKVVFSEELPKTSTGKIQKYLLREFA  326 (330)
Q Consensus       300 p~~~~~v~~lP~t~~GKv~r~~l~~~~  326 (330)
                      |..|+++++||+|++||+||++|.+..
T Consensus       978 P~~i~~v~~lP~t~~GKidr~~L~~~~ 1004 (5163)
T PRK12316        978 PAQWLALERLPLTPNGKLDRKALPAPE 1004 (5163)
T ss_pred             CCeEEEHhhCCCCCCCChhHHhhcCcc
Confidence            999999999999999999999997653

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.9e-42  Score=330.77  Aligned_cols=320  Identities=50%  Similarity=0.817  Sum_probs=261.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhh
Q 048729            7 PNSANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVP   86 (330)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~   86 (330)
                      .+......+++.++|...+..+|+++|+.+.++++||.||.+++.++|.+|.+.|+++||+|+++++|+++++..++||+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~   91 (567)
T PLN02479         12 KNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVP   91 (567)
T ss_pred             CccccccccCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence            34445556789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH--------------------------------------
Q 048729           87 MSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE--------------------------------------  128 (330)
Q Consensus        87 ~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~--------------------------------------  128 (330)
                      ++|++++|+++.++.+++.++++..+++.+++++.+.+....                                      
T Consensus        92 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (567)
T PLN02479         92 MAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKG  171 (567)
T ss_pred             hCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccC
Confidence            999999999999999999999999999999986543211000                                      


Q ss_pred             ---------H--------hcc---Cc------------------------------------------------------
Q 048729          129 ---------A--------LSL---FP------------------------------------------------------  134 (330)
Q Consensus       129 ---------~--------~~~---~~------------------------------------------------------  134 (330)
                               .        ...   ..                                                      
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~  251 (567)
T PLN02479        172 AIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGW  251 (567)
T ss_pred             cccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhH
Confidence                     0        000   00                                                      


Q ss_pred             -----------------------------------------------hHHHH-----h---------------------h
Q 048729          135 -----------------------------------------------QRARL-----K---------------------A  141 (330)
Q Consensus       135 -----------------------------------------------~~~~~-----~---------------------~  141 (330)
                                                                     .....     .                     .
T Consensus       252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~  331 (567)
T PLN02479        252 CFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMS  331 (567)
T ss_pred             HHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHH
Confidence                                                           00000     0                     0


Q ss_pred             ccCC---cccCceeE--------------------------------------EEeCCCCCcccCCCCceecEEEEecCc
Q 048729          142 RQGV---KTVGLAEV--------------------------------------DVVNPETGESVKRDGVSLGEVVLRGGC  180 (330)
Q Consensus       142 ~~G~---~~~g~te~--------------------------------------~i~d~~~g~~~~~~~~~~Gel~v~~~~  180 (330)
                      ..|.   ..||.||.                                      +++|+.++.+++.++.+.|||+++|++
T Consensus       332 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~  411 (567)
T PLN02479        332 EKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNM  411 (567)
T ss_pred             hcCCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccc
Confidence            0011   12555553                                      344433566665543357999999999


Q ss_pred             ccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCC
Q 048729          181 VTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMF  260 (330)
Q Consensus       181 ~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~  260 (330)
                      ++.|||++++.+.+.|. +|||+|||++++|++|++++.||.||++|++|++|++.+||+.+..+|.|.+++|++..++.
T Consensus       412 ~~~GY~~~~~~t~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~  490 (567)
T PLN02479        412 VMKGYLKNPKANEEAFA-NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDER  490 (567)
T ss_pred             hhhhhhcCcccccchhc-CCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchh
Confidence            99999999999998887 89999999999999999999999999999999999999999999999999999999998877


Q ss_pred             CCceeEEEEEecCCcccC-CCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          261 WGEIPCAFVSLKRDLELT-KKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       261 ~~~~~~~~v~~~~~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .++.+++++++..+.... .....+++.+.++++|+.+..|..+.+ .++|+|++||++|+.|++.+..
T Consensus       491 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~~  558 (567)
T PLN02479        491 WGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAKE  558 (567)
T ss_pred             cCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCeeHHHHHHHHHh
Confidence            778899999887654211 013457899999999999999998877 6799999999999999988754

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=2.4e-42  Score=328.28  Aligned_cols=300  Identities=31%  Similarity=0.489  Sum_probs=257.1

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEe------CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVY------NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPM   87 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~------~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~   87 (330)
                      ..++.++|.+.++.+|+++|+++      .++.+||+||.+.++++|.+|.+.|+++||+|+++++|++++++.++||++
T Consensus        21 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~  100 (538)
T TIGR03208        21 DRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACAR  100 (538)
T ss_pred             cCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence            45899999999999999999986      246899999999999999999999999999999999999999999999999


Q ss_pred             cCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH-----H------------------------HHHH--------h
Q 048729           88 SGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY-----L------------------------LLEA--------L  130 (330)
Q Consensus        88 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~------------------------~~~~--------~  130 (330)
                      +|++++|+++.++.+++.++++..+++++++++.+..     .                        ....        .
T Consensus       101 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (538)
T TIGR03208       101 IGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDT  180 (538)
T ss_pred             cCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCCcCHHHHhhccccccc
Confidence            9999999999999999999999999999998653210     0                        0000        0


Q ss_pred             c---------cCc-------------------------------------------------------------------
Q 048729          131 S---------LFP-------------------------------------------------------------------  134 (330)
Q Consensus       131 ~---------~~~-------------------------------------------------------------------  134 (330)
                      .         ...                                                                   
T Consensus       181 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~  260 (538)
T TIGR03208       181 PDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLI  260 (538)
T ss_pred             cccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHHH
Confidence            0         000                                                                   


Q ss_pred             -----------------------------------------------------------------hH-------------
Q 048729          135 -----------------------------------------------------------------QR-------------  136 (330)
Q Consensus       135 -----------------------------------------------------------------~~-------------  136 (330)
                                                                                       ..             
T Consensus       261 ~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~  340 (538)
T TIGR03208       261 LNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVS  340 (538)
T ss_pred             cCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEe
Confidence                                                                             00             


Q ss_pred             -------------------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcccc
Q 048729          137 -------------------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS  197 (330)
Q Consensus       137 -------------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~  197 (330)
                                         .....+.|.+++|. +++++|+ ++.+++.+  +.|||+++|++++.||+++++.+..  .
T Consensus       341 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~-~v~i~~~-~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~--~  414 (538)
T TIGR03208       341 AWGMTENGAVTVTEPDDALEKASTTDGRPLPGV-EVKVIDA-NGAKLSQG--ETGRLLVRGCSNFGGYLKRPHLNST--D  414 (538)
T ss_pred             eeccCcCCCccccCcccchhhccCcccccCCCC-EEEEECC-CCCCCcCC--CCcEEEEecCcccccccCCcccccc--c
Confidence                               00012456666774 7788887 78888877  7899999999999999999876543  3


Q ss_pred             CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCccc
Q 048729          198 DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLEL  277 (330)
Q Consensus       198 ~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  277 (330)
                      .+|||+|||++++|++|.++++||.+|++|++|++|+|.+||+.+.++|+|.+++|++.++...++.+.+++++..+.. 
T Consensus       415 ~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~-  493 (538)
T TIGR03208       415 AEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCT-  493 (538)
T ss_pred             CCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCC-
Confidence            4899999999999999999999999999999999999999999999999999999999988877888999998877644 


Q ss_pred             CCCCCHHHHHHHHHh-cCCCCCCCceEEEccCCCCCCCCcccHHHHH
Q 048729          278 TKKPTEKEIIEYCRA-RLPRYMVPRKVVFSEELPKTSTGKIQKYLLR  323 (330)
Q Consensus       278 ~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~  323 (330)
                         .+.+++.+.+++ +++.+++|..+.+++++|+|++||++|++|+
T Consensus       494 ---~~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~  537 (538)
T TIGR03208       494 ---LDFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR  537 (538)
T ss_pred             ---CCHHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence               667889999985 7999999999999999999999999999986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.7e-43  Score=394.51  Aligned_cols=306  Identities=20%  Similarity=0.250  Sum_probs=258.7

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      ..++.++|.++++++||++|+++.++++||+||.+.++++|++|.+.|+++|++|++++++++++++.+||++++|++++
T Consensus      3719 ~~~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~v 3798 (4334)
T PRK05691       3719 EQSYVRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYL 3798 (4334)
T ss_pred             ccCHHHHHHHHHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEe
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc-------------------c----------Cc----------
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS-------------------L----------FP----------  134 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-------------------~----------~~----------  134 (330)
                      |+++.++.+++.++++..+++++++++...........                   .          .+          
T Consensus      3799 pld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayvi~TS 3878 (4334)
T PRK05691       3799 PLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEVQAGEVASHNPGIYSGPDNLAYVIYTS 3878 (4334)
T ss_pred             CCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecccccccccccCCCCCCCCCceEEEEECC
Confidence            99999999999999999999999998754321110000                   0          00          


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus      3879 GSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~ 3958 (4334)
T PRK05691       3879 GSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQA 3958 (4334)
T ss_pred             CCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------------------hHHH-----------------------------------H
Q 048729          135 ----------------------------------------QRAR-----------------------------------L  139 (330)
Q Consensus       135 ----------------------------------------~~~~-----------------------------------~  139 (330)
                                                              ....                                   .
T Consensus      3959 ~~vt~~~~~Ps~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~ 4038 (4334)
T PRK05691       3959 QGITVLESVPSLIQGMLAEDRQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGS 4038 (4334)
T ss_pred             cCCeEEEeCHHHHHHHHhhccccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCC
Confidence                                                    0000                                   0


Q ss_pred             hhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcccc-------CCCeEEeCceEEEec
Q 048729          140 KARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS-------DNGWFYTGDIGVMHA  212 (330)
Q Consensus       140 ~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~~g~~~TGD~~~~~~  212 (330)
                      ..++|.|+.|. ++.|+|. .++++|.|  ..|||+|+|+.+++||+++|+.+.+.|.       .++||+|||++++++
T Consensus      4039 ~~~iG~p~~~~-~~~v~d~-~~~~~p~g--~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~ 4114 (4334)
T PRK05691       4039 YLPIGSPTDNN-RLYLLDE-ALELVPLG--AVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRS 4114 (4334)
T ss_pred             cCCCCCccCCC-EEEEECC-CCCCCCCC--CceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecC
Confidence            12355555553 5666666 77888888  8899999999999999999999998883       246999999999999


Q ss_pred             CceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHh
Q 048729          213 DGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRA  292 (330)
Q Consensus       213 ~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~  292 (330)
                      ||.++|+||.|++||++|+||++.+||+.|.++|+|.+++|+.... ..++.++++++...+.... ....+++++.+++
T Consensus      4115 dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~~-~~~~~l~a~~~~~~~~~~~-~~~~~~l~~~l~~ 4192 (4334)
T PRK05691       4115 DGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEG-VNGKHLVGYLVPHQTVLAQ-GALLERIKQRLRA 4192 (4334)
T ss_pred             CCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEecC-CCCcEEEEEEeCCcccccc-hHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998876543 3456888888876553211 1235789999999


Q ss_pred             cCCCCCCCceEEEccCCCCCCCCcccHHHHHHH
Q 048729          293 RLPRYMVPRKVVFSEELPKTSTGKIQKYLLREF  325 (330)
Q Consensus       293 ~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~  325 (330)
                      +||.|++|..|+++++||+|+|||+||++|.+.
T Consensus      4193 ~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4193 ELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred             hCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence            999999999999999999999999999999764

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-42  Score=327.13  Aligned_cols=295  Identities=26%  Similarity=0.437  Sum_probs=243.9

Q ss_pred             HHHHhcCCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCC
Q 048729           23 RAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLD  100 (330)
Q Consensus        23 ~~~~~~p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~  100 (330)
                      .++..+|+++|+.+.  ++++||+||.+.++++|++|.+.|+++||+|+++++|++++++.+|||+++|++++++++.++
T Consensus         5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~   84 (501)
T PRK13390          5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT   84 (501)
T ss_pred             hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence            466789999999873  689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEcccchHHHH-----------------------H---Hh------------------------
Q 048729          101 AHTLSVLLQHSESKLVFVDHLHTYLLL-----------------------E---AL------------------------  130 (330)
Q Consensus       101 ~~~l~~~l~~~~~~~i~~~~~~~~~~~-----------------------~---~~------------------------  130 (330)
                      ++++.+++...++++++++........                       .   ..                        
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK  164 (501)
T PRK13390         85 APEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEIDGFGSFEAALAGAGPRLTEQPCGAVMLYSSGTTGFPK  164 (501)
T ss_pred             HHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecCcccccccHHHHhcccCCCCCCCcccEEEEeCCCCCCCCC
Confidence            999999999888888776432110000                       0   00                        


Q ss_pred             ----------------------c-cC--c---------------------------------------------------
Q 048729          131 ----------------------S-LF--P---------------------------------------------------  134 (330)
Q Consensus       131 ----------------------~-~~--~---------------------------------------------------  134 (330)
                                            . ..  .                                                   
T Consensus       165 gV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t  244 (501)
T PRK13390        165 GIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGHVERYRIT  244 (501)
T ss_pred             EEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcCCcCHHHHHHHHHHcCCe
Confidence                                  0 00  0                                                   


Q ss_pred             -----------------------------------------hHH-------------------------------HHhhc
Q 048729          135 -----------------------------------------QRA-------------------------------RLKAR  142 (330)
Q Consensus       135 -----------------------------------------~~~-------------------------------~~~~~  142 (330)
                                                               ...                               ....+
T Consensus       245 ~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  324 (501)
T PRK13390        245 VTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGS  324 (501)
T ss_pred             EEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCC
Confidence                                                     000                               00112


Q ss_pred             cCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC--CCeEEeCceEEEecCceEEEEe
Q 048729          143 QGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD--NGWFYTGDIGVMHADGYVEIKD  220 (330)
Q Consensus       143 ~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--~g~~~TGD~~~~~~~G~l~~~G  220 (330)
                      +|.|++|  +++++|+ +|++++.+  +.|||+++|++++.||+++++.+...+..  ++|++|||++++|++|.+++.|
T Consensus       325 ~G~~~~g--~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~g  399 (501)
T PRK13390        325 VGRSVLG--DLHICDD-DGNELPAG--RIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLAD  399 (501)
T ss_pred             cCCcccc--eEEEECC-CCCCCCCC--CceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEee
Confidence            3334443  2556666 78888887  88999999999999999999988877643  6799999999999999999999


Q ss_pred             cCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCC
Q 048729          221 RSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVP  300 (330)
Q Consensus       221 R~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  300 (330)
                      |.||++|++|.+|+|.+||+.+.++|+|.++++++.+++..++.+++++++..+.... ....+++.+.++++|+.+++|
T Consensus       400 R~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~-~~~~~~l~~~~~~~l~~~~~P  478 (501)
T PRK13390        400 RKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGS-DELARELIDYTRSRIAHYKAP  478 (501)
T ss_pred             ccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcc-hhhHHHHHHHHHHhcccCCCC
Confidence            9999999999999999999999999999999999999988888999998877653211 123568999999999999999


Q ss_pred             ceEEEccCCCCCCCCcccHHHHH
Q 048729          301 RKVVFSEELPKTSTGKIQKYLLR  323 (330)
Q Consensus       301 ~~~~~v~~lP~t~~GKv~r~~l~  323 (330)
                      ..++++++||+|++||++|++|+
T Consensus       479 ~~~~~~~~iP~t~~GKi~r~~L~  501 (501)
T PRK13390        479 RSVEFVDELPRTPTGKLVKGLLR  501 (501)
T ss_pred             cEEEEeccCCCCCccceehhhcC
Confidence            99999999999999999999874

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.2e-42  Score=326.97  Aligned_cols=304  Identities=31%  Similarity=0.482  Sum_probs=259.0

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      ..++.++|.+.++.+|+++|+++.++++||.||.+.++++|.+|. ..|+++||+|+++++|++++++.++||+++|+++
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~  101 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIV  101 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence            357999999999999999999999999999999999999999998 5899999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH-------------------------------------------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA-------------------------------------------  129 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-------------------------------------------  129 (330)
                      +|+++.++.+.+.++++..+++++++++.....+...                                           
T Consensus       102 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (560)
T PRK08974        102 VNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLP  181 (560)
T ss_pred             eccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccccCC
Confidence            9999999999999999999999988654321110000                                           


Q ss_pred             --------h----------ccCc---------------------------------------------------------
Q 048729          130 --------L----------SLFP---------------------------------------------------------  134 (330)
Q Consensus       130 --------~----------~~~~---------------------------------------------------------  134 (330)
                              .          ....                                                         
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  261 (560)
T PRK08974        182 DAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYH  261 (560)
T ss_pred             CcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHH
Confidence                    0          0000                                                         


Q ss_pred             -------------------------------------------------------------------------------h
Q 048729          135 -------------------------------------------------------------------------------Q  135 (330)
Q Consensus       135 -------------------------------------------------------------------------------~  135 (330)
                                                                                                     .
T Consensus       262 ~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~  341 (560)
T PRK08974        262 IFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQAV  341 (560)
T ss_pred             HHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCHHH
Confidence                                                                                           0


Q ss_pred             HH-------------------------------HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCccccc
Q 048729          136 RA-------------------------------RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVG  184 (330)
Q Consensus       136 ~~-------------------------------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~g  184 (330)
                      ..                               ....+.|.|++|. +++++|+ ++++++.+  +.|||+++|+.++.|
T Consensus       342 ~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~g--~~Gel~v~g~~~~~g  417 (560)
T PRK08974        342 AERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPST-EIKLVDD-DGNEVPPG--EPGELWVKGPQVMLG  417 (560)
T ss_pred             HHHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCC-EEEEECC-CCCCCCCC--CceEEEEecCCcchh
Confidence            00                               0012345555564 6777887 78888888  889999999999999


Q ss_pred             ccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCce
Q 048729          185 YFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEI  264 (330)
Q Consensus       185 y~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~  264 (330)
                      |+++++.+...+. +|||+|||+++++++|.++++||.+|+++++|.++++.+||+.+.++|+|.+++|++.++...++.
T Consensus       418 y~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~  496 (560)
T PRK08974        418 YWQRPEATDEVIK-DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEA  496 (560)
T ss_pred             hcCChhhhhhhhh-cCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceE
Confidence            9999998888775 899999999999999999999999999999999999999999999999999999999988877777


Q ss_pred             eEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhh
Q 048729          265 PCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAK  327 (330)
Q Consensus       265 ~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~  327 (330)
                      +.++++.... .    ...+++.+.+.++++.+..|..+.++++||+|++||++|+.|++.+.
T Consensus       497 ~~~~v~~~~~-~----~~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~  554 (560)
T PRK08974        497 VKIFVVKKDP-S----LTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEAR  554 (560)
T ss_pred             EEEEEECCCC-C----CCHHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHH
Confidence            7777765432 2    45688999999999999999999999999999999999999998764

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.6e-42  Score=331.55  Aligned_cols=307  Identities=23%  Similarity=0.311  Sum_probs=246.1

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeC---------CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYN---------NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFG   84 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~---------~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la   84 (330)
                      ..|+.+++.+.++.+|+++|+++.         .+.+||+||.++++++|++|.+. +++||+|+++++|++++++++||
T Consensus        33 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA  111 (612)
T PRK12476         33 GTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFA  111 (612)
T ss_pred             cCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHH
Confidence            468999999999999999999863         14899999999999999999976 89999999999999999999999


Q ss_pred             hhhcCcEEeec-CCCCC--HHHHHHHHHhcCCcEEEEcccchHHHHHHh----------------------c-----cCc
Q 048729           85 VPMSGAILNNI-NTRLD--AHTLSVLLQHSESKLVFVDHLHTYLLLEAL----------------------S-----LFP  134 (330)
Q Consensus        85 ~~~~G~~~~~l-~~~~~--~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~----------------------~-----~~~  134 (330)
                      |+++|++++|+ ++.++  ++++.++++..++++++++......+....                      .     ...
T Consensus       112 ~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  191 (612)
T PRK12476        112 AIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPDSAGESFVPVELD  191 (612)
T ss_pred             HHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccccccccccCCCCC
Confidence            99999999999 56665  789999999999999998764433211000                      0     000


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       192 ~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~  271 (612)
T PRK12476        192 TDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAF  271 (612)
T ss_pred             CCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------hH---H---H---Hh---------------------------------
Q 048729          135 --------------------------------QR---A---R---LK---------------------------------  140 (330)
Q Consensus       135 --------------------------------~~---~---~---~~---------------------------------  140 (330)
                                                      ..   .   .   ..                                 
T Consensus       272 ~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~  351 (612)
T PRK12476        272 VRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVVLIIGSEPVSIDAVTTFNKAFAPYGLPRTAF  351 (612)
T ss_pred             HHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHheEEecccCCCHHHHHHHHHHHHhcCCCcccc
Confidence                                            00   0   0   00                                 


Q ss_pred             --------------------------------------------------hccCCcccCceeEEEeCCCCCcccCCCCce
Q 048729          141 --------------------------------------------------ARQGVKTVGLAEVDVVNPETGESVKRDGVS  170 (330)
Q Consensus       141 --------------------------------------------------~~~G~~~~g~te~~i~d~~~g~~~~~~~~~  170 (330)
                                                                        .++|.+++|. +++|+|+++|++++.+  +
T Consensus       352 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~-~v~ivd~~~g~~~~~g--~  428 (612)
T PRK12476        352 KPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQ-WAVIVDPDTGAELPDG--E  428 (612)
T ss_pred             ccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCC-EEEEEeCCCCcCCCCC--C
Confidence                                                              0123333343 4555666348888877  8


Q ss_pred             ecEEEEecCcccccccCCchhhhcccc------------------CCCeEEeCceEEEecCceEEEEecCCCeEEeCCee
Q 048729          171 LGEVVLRGGCVTVGYFKDKEATRRCIS------------------DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGEN  232 (330)
Q Consensus       171 ~Gel~v~~~~~~~gy~~~~~~~~~~~~------------------~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~  232 (330)
                      .|||+++|++++.||+++|+.+.+.|.                  .++||+|||+|+++ +|+++|+||.||+||++|++
T Consensus       429 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~  507 (612)
T PRK12476        429 VGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVIDGRN  507 (612)
T ss_pred             EEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEECCcc
Confidence            899999999999999999998887774                  13599999999985 99999999999999999999


Q ss_pred             cCHHHHHHHHhc-CcCcce--EEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCC-CCCC-CceEEEcc
Q 048729          233 ICSAEVESVLYS-ITAVNE--AAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLP-RYMV-PRKVVFSE  307 (330)
Q Consensus       233 v~~~~iE~~l~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~-p~~~~~v~  307 (330)
                      |+|.+||++|.+ ||.|.+  +++++.+++. ++++++++++.++...   .+.+++.+.+++++. .+.+ |+.+.+++
T Consensus       508 I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~---~~~~~l~~~~~~~l~~~~~~~p~~v~~v~  583 (612)
T PRK12476        508 HYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSR---ADPAPAIDAIRAAVSRRHGLAVADVRLVP  583 (612)
T ss_pred             cCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCccc---ccHHHHHHHHHHHHHHhhCCcceEEEEEC
Confidence            999999999985 899999  7778887766 7889999888765321   456788888888877 4776 67888887


Q ss_pred             --CCCCCCCCcccHHHHHHHhhhc
Q 048729          308 --ELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       308 --~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                        +||+|++||++|++|++++.+.
T Consensus       584 ~~~lP~t~~GKi~r~~L~~~~~~~  607 (612)
T PRK12476        584 AGAIPRTTSGKLARRACRAQYLDG  607 (612)
T ss_pred             CCCcCcCCchHHHHHHHHHHHHcC
Confidence              6999999999999999998654

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=3e-42  Score=324.92  Aligned_cols=309  Identities=21%  Similarity=0.282  Sum_probs=255.5

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN   94 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~   94 (330)
                      +++.+.|.+.+..+|+++++.+.++++||.||.+.+.++|.+|.+.|+++||+|+++.+++.++++.++||++.|+++++
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~   81 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIP   81 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEec
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEcccch-----------HHHHHHh---c------cCc--------------------
Q 048729           95 INTRLDAHTLSVLLQHSESKLVFVDHLHT-----------YLLLEAL---S------LFP--------------------  134 (330)
Q Consensus        95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~-----------~~~~~~~---~------~~~--------------------  134 (330)
                      +++.++.+.+.++++..+++++++.....           ..+....   .      ...                    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v  161 (503)
T PRK04813         82 VDVSSPAERIEMIIEVAKPSLIIATEELPLEILGIPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGV  161 (503)
T ss_pred             CCCCChHHHHHHHHHhcCCCEEEecccccccccCCcEEehHHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEE
Confidence            99999999999999999999999864320           0000000   0      000                    


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       162 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~  241 (503)
T PRK04813        162 QISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVST  241 (503)
T ss_pred             EeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeC
Confidence                                                                                            


Q ss_pred             ----------------------------------hHHHH------------------------------------hhccC
Q 048729          135 ----------------------------------QRARL------------------------------------KARQG  144 (330)
Q Consensus       135 ----------------------------------~~~~~------------------------------------~~~~G  144 (330)
                                                        ....+                                    ..+.|
T Consensus       242 p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g  321 (503)
T PRK04813        242 PSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIG  321 (503)
T ss_pred             hHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCccc
Confidence                                              00000                                    01133


Q ss_pred             CcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcccc---CCCeEEeCceEEEecCceEEEEec
Q 048729          145 VKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS---DNGWFYTGDIGVMHADGYVEIKDR  221 (330)
Q Consensus       145 ~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~~g~~~TGD~~~~~~~G~l~~~GR  221 (330)
                      .+..|. +++|+|+ +|.+++.+  +.|||+++|++++.||+++++.+...|.   ..+||+|||++++ ++|.+++.||
T Consensus       322 ~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR  396 (503)
T PRK04813        322 YAKPDS-PLLIIDE-EGTKLPDG--EQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGR  396 (503)
T ss_pred             ccCCCC-EEEEECC-CCCCCCCC--CceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEecc
Confidence            333443 4456665 67777777  7899999999999999999998887763   2359999999999 8999999999


Q ss_pred             CCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCc
Q 048729          222 SKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR  301 (330)
Q Consensus       222 ~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~  301 (330)
                      .+|++|++|+++++.+||+.+.++|+|.++++++..++..++.++++++...+.........+++.++++++++++.+|.
T Consensus       397 ~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~  476 (503)
T PRK04813        397 IDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPR  476 (503)
T ss_pred             ccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCCe
Confidence            99999999999999999999999999999999998776667788888887664221111233678999999999999999


Q ss_pred             eEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          302 KVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       302 ~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .+++++++|+|++||++|++|++.+.+
T Consensus       477 ~i~~~~~~P~t~~gKv~r~~l~~~~~~  503 (503)
T PRK04813        477 KFIYRDSLPLTPNGKIDRKALIEEVNK  503 (503)
T ss_pred             EEEEeccCCCCCCCCCcHHHHHHHhcC
Confidence            999999999999999999999998753

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.6e-42  Score=356.21  Aligned_cols=308  Identities=22%  Similarity=0.269  Sum_probs=264.9

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeC-CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYN-NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA   90 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~-~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~   90 (330)
                      ....++.+++.+.++++|+++|+++. ++++||+||.++++++|++|.+ ++++||+|+++++|++++++.++||+++|+
T Consensus       612 ~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~  690 (1146)
T PRK08633        612 EALPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGK  690 (1146)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCC
Confidence            34568999999999999999999974 6899999999999999999986 489999999999999999999999999999


Q ss_pred             EEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH-------------------------------H------h---
Q 048729           91 ILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE-------------------------------A------L---  130 (330)
Q Consensus        91 ~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~-------------------------------~------~---  130 (330)
                      +++|+++..+.+++.+++++.+++++++++...+.+..                               .      .   
T Consensus       691 v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (1146)
T PRK08633        691 VPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARLLPARL  770 (1146)
T ss_pred             EEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhccCCHHH
Confidence            99999999999999999999999999987643332210                               0      0   


Q ss_pred             ------ccCc----------------------------------------------------------------------
Q 048729          131 ------SLFP----------------------------------------------------------------------  134 (330)
Q Consensus       131 ------~~~~----------------------------------------------------------------------  134 (330)
                            ....                                                                      
T Consensus       771 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~  850 (1146)
T PRK08633        771 LKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGI  850 (1146)
T ss_pred             HHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCC
Confidence                  0000                                                                      


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       851 ~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~Y  930 (1146)
T PRK08633        851 KVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGY  930 (1146)
T ss_pred             EEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeeccc
Confidence                                                                                            


Q ss_pred             ---h--------HH------------HHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchh
Q 048729          135 ---Q--------RA------------RLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEA  191 (330)
Q Consensus       135 ---~--------~~------------~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~  191 (330)
                         +        ..            ....++|.|++|. +++++|++++++++.+  +.|||+++|++++.||+++|+.
T Consensus       931 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~ 1007 (1146)
T PRK08633        931 GATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGV-AVRIVDPETFEELPPG--EDGLILIGGPQVMKGYLGDPEK 1007 (1146)
T ss_pred             ccccCcceEEEecCcccccccccccCCCCCCccccCCCC-EEEEEcCCCCccCCCC--CceEEEEcCCCccccccCCccc
Confidence               0        00            0123578888886 8999997789999988  8899999999999999999998


Q ss_pred             hhccccC---CCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCc--CcceEEEEeecCCCCCceeE
Q 048729          192 TRRCISD---NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSIT--AVNEAAVVARPDMFWGEIPC  266 (330)
Q Consensus       192 ~~~~~~~---~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~--~v~~~~v~~~~~~~~~~~~~  266 (330)
                      +.+.+.+   +|||+|||++++|+||++++.||.||++|++|++|+|.+||+.+.+||  .+.+++|++.+++..+++++
T Consensus      1008 t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~ 1087 (1146)
T PRK08633       1008 TAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLV 1087 (1146)
T ss_pred             hHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEE
Confidence            8877752   289999999999999999999999999999999999999999999998  46689999999988888998


Q ss_pred             EEEEecCCcccCCCCCHHHHHHHHHh-cCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhcC
Q 048729          267 AFVSLKRDLELTKKPTEKEIIEYCRA-RLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSVS  330 (330)
Q Consensus       267 ~~v~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~  330 (330)
                      ++++..   .    .+.+++.+.+.+ +++++.+|..+++++++|+|++||+||++|++++++++
T Consensus      1088 ~~v~~~---~----~~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~~~ 1145 (1146)
T PRK08633       1088 VLHTCG---A----EDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALALL 1145 (1146)
T ss_pred             EEEecC---c----cCHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhc
Confidence            888752   1    456788888875 69999999999999999999999999999999988763

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=3.7e-42  Score=335.13  Aligned_cols=314  Identities=18%  Similarity=0.227  Sum_probs=245.0

Q ss_pred             CCCCCHHHH-HHHHHHhcCCCcEEEeCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 048729           12 STPLTTLGF-LERAAAAYTDCPSLVYNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQ   82 (330)
Q Consensus        12 ~~~~~~~~~-l~~~~~~~p~~~a~~~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~   82 (330)
                      ...+|+.+. |.+.++.+|+++|+++.+        +++||+||.+++.++|++|++.|+++||+|+++++|++++++++
T Consensus       171 g~~ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~  250 (728)
T PLN03052        171 GAVLNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIY  250 (728)
T ss_pred             CCEeEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            344566664 444446789999999854        37999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch---------------------------------------
Q 048729           83 FGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT---------------------------------------  123 (330)
Q Consensus        83 la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------------------------------------  123 (330)
                      |||+++|++++|+++.++++++.+++++.+++++|+.+...                                       
T Consensus       251 LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~  330 (728)
T PLN03052        251 LAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLREGDM  330 (728)
T ss_pred             HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCccccccccCCc
Confidence            99999999999999999999999999999999999865321                                       


Q ss_pred             --HHHHHHh--------------c-cCc----------------------------------------------------
Q 048729          124 --YLLLEAL--------------S-LFP----------------------------------------------------  134 (330)
Q Consensus       124 --~~~~~~~--------------~-~~~----------------------------------------------------  134 (330)
                        ..+....              . ..+                                                    
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~  410 (728)
T PLN03052        331 SWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMM  410 (728)
T ss_pred             cHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHh
Confidence              0000000              0 000                                                    


Q ss_pred             ---------------------------------------------------------------------------hH---
Q 048729          135 ---------------------------------------------------------------------------QR---  136 (330)
Q Consensus       135 ---------------------------------------------------------------------------~~---  136 (330)
                                                                                                 ..   
T Consensus       411 g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~~~~~~  490 (728)
T PLN03052        411 GPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDDYLW  490 (728)
T ss_pred             HHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCHHHHHH
Confidence                                                                                       00   


Q ss_pred             ------------------------------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCc--cccc
Q 048729          137 ------------------------------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGC--VTVG  184 (330)
Q Consensus       137 ------------------------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~--~~~g  184 (330)
                                                    ....+++|.|++|+ ++.|+|+ +|++++.+..+.|||+++++.  ...+
T Consensus       491 ~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~-~v~v~d~-~g~~v~~g~~~~GEL~v~~~~~~~~~~  568 (728)
T PLN03052        491 LMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGC-KLFILDD-SGNPYPDDAPCTGELALFPLMFGASST  568 (728)
T ss_pred             HHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCc-eEEEECC-CCCCCCCCCCceEEEEEeCCCCCCCcc
Confidence                                          00012355667775 8888897 899998762125999998653  3456


Q ss_pred             ccCCchhhhcccc------CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHh-cCcCcceEEEEeec
Q 048729          185 YFKDKEATRRCIS------DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLY-SITAVNEAAVVARP  257 (330)
Q Consensus       185 y~~~~~~~~~~~~------~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~  257 (330)
                      |+++. .....|.      .+.||+|||++++|++|+++++||+||+||++|+||++.+||+++. .||+|.+++|++.+
T Consensus       569 ~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~  647 (728)
T PLN03052        569 LLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVP  647 (728)
T ss_pred             ccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeee
Confidence            77653 3333332      1239999999999999999999999999999999999999999995 79999999999999


Q ss_pred             CCCCC-ceeEEEEEec--CCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          258 DMFWG-EIPCAFVSLK--RDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       258 ~~~~~-~~~~~~v~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++..+ ++++++|+++  ++...+.....+.+.+.++++|+++.+|..|+++++||+|++||++|+.|++.+.+
T Consensus       648 d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~  721 (728)
T PLN03052        648 PPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQ  721 (728)
T ss_pred             cCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHh
Confidence            88665 7899999987  44331101223444455678899999999999999999999999999999998864

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.3e-42  Score=387.62  Aligned_cols=306  Identities=19%  Similarity=0.243  Sum_probs=264.5

Q ss_pred             CCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc
Q 048729           11 NSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA   90 (330)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~   90 (330)
                      .....++.++|.++++.+|+++|+.+.++++||+||.+.++++|++|.+.|+++|++|++++++++++++++||++++|+
T Consensus      1127 ~~~~~~l~~~~~~~a~~~p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~ 1206 (4334)
T PRK05691       1127 APAQAWLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGG 1206 (4334)
T ss_pred             CCccCCHHHHHHHHHHhCCCCeEEEECCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence            34456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh------------c-------c---Cc--------------
Q 048729           91 ILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL------------S-------L---FP--------------  134 (330)
Q Consensus        91 ~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~------------~-------~---~~--------------  134 (330)
                      +++|+++.++.+++.++++..++++++++......+....            .       .   .+              
T Consensus      1207 ~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG 1286 (4334)
T PRK05691       1207 AYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALDSLHLDSWPSQAPGLHLHGDNLAYVIYTSGSTG 1286 (4334)
T ss_pred             EEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccccCceEEeeccccccccCCCCCCCCCCCCCeEEEEEcCCCCC
Confidence            9999999999999999999999999998765433221100            0       0   00              


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus      1287 ~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt 1366 (4334)
T PRK05691       1287 QPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVT 1366 (4334)
T ss_pred             CCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCe
Confidence                                                                                            


Q ss_pred             -------------------------------------h---H------------------------------HHHhhccC
Q 048729          135 -------------------------------------Q---R------------------------------ARLKARQG  144 (330)
Q Consensus       135 -------------------------------------~---~------------------------------~~~~~~~G  144 (330)
                                                           .   .                              .....++|
T Consensus      1367 ~~~~~Ps~l~~l~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG 1446 (4334)
T PRK05691       1367 TLHFVPPLLQLFIDEPLAAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIG 1446 (4334)
T ss_pred             EEECcHHHHHHHHhCcccccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCccc
Confidence                                                 0   0                              00112456


Q ss_pred             CcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC-------CCeEEeCceEEEecCceEE
Q 048729          145 VKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD-------NGWFYTGDIGVMHADGYVE  217 (330)
Q Consensus       145 ~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------~g~~~TGD~~~~~~~G~l~  217 (330)
                      .|+.|. ++.|+|+ ++++++.|  +.|||+|+|+++++||+++|+.+.+.|..       .+||+|||+|++++||.++
T Consensus      1447 ~p~~~~-~~~i~d~-~~~~vp~G--~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~ 1522 (4334)
T PRK05691       1447 RPLGNV-LCRVLDA-ELNLLPPG--VAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALE 1522 (4334)
T ss_pred             ceeCCC-EEEEECC-CCCCCCCC--CceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEE
Confidence            777775 7888887 78999988  88999999999999999999999888742       2499999999999999999


Q ss_pred             EEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC
Q 048729          218 IKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY  297 (330)
Q Consensus       218 ~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~  297 (330)
                      |+||+|++||++|++|+|.+||+.|.++|+|.+++|+...+. .+..++++++...+..    ...+++++.++++|+.|
T Consensus      1523 ~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~~----~~~~~l~~~l~~~Lp~y 1597 (4334)
T PRK05691       1523 YLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQE----AEAERLKAALAAELPEY 1597 (4334)
T ss_pred             EecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCCC----CCHHHHHHHHHHhCccc
Confidence            999999999999999999999999999999999999976654 3478888888776544    56789999999999999


Q ss_pred             CCCceEEEccCCCCCCCCcccHHHHHHH
Q 048729          298 MVPRKVVFSEELPKTSTGKIQKYLLREF  325 (330)
Q Consensus       298 ~~p~~~~~v~~lP~t~~GKv~r~~l~~~  325 (330)
                      ++|..++++++||+|++||+||++|.+.
T Consensus      1598 ~vP~~~~~~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1598 MVPAQLIRLDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred             cCCcEEEEccccCCCCCCCcChhhcCcc
Confidence            9999999999999999999999998653

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.4e-42  Score=384.65  Aligned_cols=310  Identities=21%  Similarity=0.290  Sum_probs=264.8

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      ....++.++|.++++.+||++|+++.++++||+||.+.++++|++|.+.|+++|++|++++++++++++.+|||+++|++
T Consensus       509 ~~~~~~~~~~~~~a~~~pd~~Al~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lail~aG~~  588 (3956)
T PRK12467        509 YAPDCVHQLIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGA  588 (3956)
T ss_pred             CCCCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcE
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH--------------H----hccC------c-------------
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE--------------A----LSLF------P-------------  134 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~--------------~----~~~~------~-------------  134 (330)
                      ++|+++.++.+++.+++++.+++++++++.....+..              .    ....      +             
T Consensus       589 ~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGST  668 (3956)
T PRK12467        589 YVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPVPAGLRSLCLDEPADLLCGYSGHNPEVALDPDNLAYVIYTSGST  668 (3956)
T ss_pred             EeccCCCChHHHHHHHHHhcCCCEEEechhhhhhcccccCccEEEeccccccccccCCCCCCCCCCCCCeEEEEECCCCC
Confidence            9999999999999999999999999998643321110              0    0000      0             


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       669 G~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~v  748 (3956)
T PRK12467        669 GQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQGV  748 (3956)
T ss_pred             CCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCC
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------------hH-----------HH---Hhh
Q 048729          135 -----------------------------------------------------------QR-----------AR---LKA  141 (330)
Q Consensus       135 -----------------------------------------------------------~~-----------~~---~~~  141 (330)
                                                                                 +.           ..   ...
T Consensus       749 t~~~~~Ps~~~~l~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~  828 (3956)
T PRK12467        749 TVLKIVPSHLQALLQASRVALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNV  828 (3956)
T ss_pred             eEEEcCHHHHHHHHhhhccccCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhheeeEecccccccCCCC
Confidence                                                                       00           00   013


Q ss_pred             ccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC-------CCeEEeCceEEEecCc
Q 048729          142 RQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD-------NGWFYTGDIGVMHADG  214 (330)
Q Consensus       142 ~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------~g~~~TGD~~~~~~~G  214 (330)
                      ++|.|++|. ++.|+|+ ++++++.+  +.|||+|+|+++++||+++|+.+.+.|..       ++||+|||+|++++||
T Consensus       829 ~iG~p~~~~-~~~i~d~-~~~~vp~G--~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG  904 (3956)
T PRK12467        829 PIGQPLANL-GLYILDH-YLNPVPVG--VVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADG  904 (3956)
T ss_pred             cccCCcCCC-EEEEECC-CCCCCCCC--CceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcCCC
Confidence            467777775 8888888 78999988  88999999999999999999999888742       3499999999999999


Q ss_pred             eEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcc-cCCCCCHHHHHHHHHhc
Q 048729          215 YVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLE-LTKKPTEKEIIEYCRAR  293 (330)
Q Consensus       215 ~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~l~~~l~~~  293 (330)
                      .++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++..+. .++.++++++...... .......+++++.++++
T Consensus       905 ~l~~~GR~d~~vki~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~-~~~~lva~vv~~~~~~~~~~~~~~~~l~~~l~~~  983 (3956)
T PRK12467        905 VIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGD-AGLQLVAYLVPAAVADGAEHQATRDELKAQLRQV  983 (3956)
T ss_pred             cEEEeccccCeEEECCEecCHHHHHHHHHhCCCcceEEEEEEcCC-CCcEEEEEEEecccccccccccCHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999986543 4567888888553321 11125678999999999


Q ss_pred             CCCCCCCceEEEccCCCCCCCCcccHHHHHHHh
Q 048729          294 LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFA  326 (330)
Q Consensus       294 l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~  326 (330)
                      |+.|++|..++++++||+|+|||+||++|.+..
T Consensus       984 Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~ 1016 (3956)
T PRK12467        984 LPDYMVPAHLLLLDSLPLTPNGKLDRKALPKPD 1016 (3956)
T ss_pred             CchhcCCceEeeecccCCCCCCCcCHhhcCCcc
Confidence            999999999999999999999999999997653

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=4.7e-42  Score=336.10  Aligned_cols=308  Identities=22%  Similarity=0.329  Sum_probs=241.4

Q ss_pred             CCCHHHHHHHHHHhcCC-CcEEEeC-CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           14 PLTTLGFLERAAAAYTD-CPSLVYN-NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~-~~a~~~~-~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      ..|+.++|.+.++.+|+ ++|+.+. ++++||+||.+.++++|++|.+. +++||+|+++++|++++++++|||+++|++
T Consensus       203 ~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v  281 (718)
T PRK08043        203 RETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRI  281 (718)
T ss_pred             CCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCc
Confidence            46899999999999998 6888764 47899999999999999999976 599999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHH-----HH------------H----------------H--hc----c
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYL-----LL------------E----------------A--LS----L  132 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~------------~----------------~--~~----~  132 (330)
                      ++|+++.++++++.++++.+++++++++......     +.            .                .  ..    .
T Consensus       282 ~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (718)
T PRK08043        282 PAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTADKLWIFAHLLMPRLAQVK  361 (718)
T ss_pred             ccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhhcchhHHHHHHHHHhCCccccCC
Confidence            9999999999999999999999999986543211     00            0                0  00    0


Q ss_pred             -Cc-----------------------------------------------------------------------------
Q 048729          133 -FP-----------------------------------------------------------------------------  134 (330)
Q Consensus       133 -~~-----------------------------------------------------------------------------  134 (330)
                       ..                                                                             
T Consensus       362 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~  441 (718)
T PRK08043        362 QQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSP  441 (718)
T ss_pred             CCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCc
Confidence             00                                                                             


Q ss_pred             -----------------------------------------------------hHHHHhhccCC---cccCceeEEEe--
Q 048729          135 -----------------------------------------------------QRARLKARQGV---KTVGLAEVDVV--  156 (330)
Q Consensus       135 -----------------------------------------------------~~~~~~~~~G~---~~~g~te~~i~--  156 (330)
                                                                           ....+....|.   ..||.||+..+  
T Consensus       442 ~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~  521 (718)
T PRK08043        442 LHYRIVPELVYDRNCTVLFGTSTFLGNYARFANPYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVS  521 (718)
T ss_pred             ccHHHHHHHHHhcCCeEEEchHHHHHHhhhhcCcccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEE
Confidence                                                                 00001111222   23666664311  


Q ss_pred             -C-C------CCCcccCC---------CCceecEEEEecCcccccccCC--chh-------hhccccCCCeEEeCceEEE
Q 048729          157 -N-P------ETGESVKR---------DGVSLGEVVLRGGCVTVGYFKD--KEA-------TRRCISDNGWFYTGDIGVM  210 (330)
Q Consensus       157 -d-~------~~g~~~~~---------~~~~~Gel~v~~~~~~~gy~~~--~~~-------~~~~~~~~g~~~TGD~~~~  210 (330)
                       . +      .-|++++.         +.++.|||+++|++++.||+++  ++.       +...+..+|||+|||+|++
T Consensus       522 ~~~~~~~~~~svG~p~pg~~~~i~d~~~~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~  601 (718)
T PRK08043        522 INVPMAAKPGTVGRILPGMDARLLSVPGIEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRF  601 (718)
T ss_pred             ecCCcccCCCCCCCcCCCCeeEEecCCCCCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEE
Confidence             0 0      01222220         0114599999999999999983  432       1122223799999999999


Q ss_pred             ecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHH
Q 048729          211 HADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYC  290 (330)
Q Consensus       211 ~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l  290 (330)
                      |+||++++.||.+|+||++|++|+|.+||+.+.+++.+.++++++.+++..++.+++++.   +..    .+.+++.+.+
T Consensus       602 d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~---~~~----~~~~~l~~~~  674 (718)
T PRK08043        602 DEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT---DSE----LTREKLQQYA  674 (718)
T ss_pred             cCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc---Ccc----cCHHHHHHHH
Confidence            999999999999999999999999999999999999888888898888877888877653   222    5678899999


Q ss_pred             Hhc-CCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          291 RAR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       291 ~~~-l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      +++ |+.|++|..+.++++||+|++||++|++|++++.+.
T Consensus       675 ~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  714 (718)
T PRK08043        675 REHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDEP  714 (718)
T ss_pred             HhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhcc
Confidence            987 999999999999999999999999999999988653

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.3e-42  Score=318.26  Aligned_cols=297  Identities=29%  Similarity=0.430  Sum_probs=256.6

Q ss_pred             cCCCcEEEeCC------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCH
Q 048729           28 YTDCPSLVYNN------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA  101 (330)
Q Consensus        28 ~p~~~a~~~~~------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~  101 (330)
                      .++.+++++.+      ..+||.|+.+.+.++|..|...|+++||+|++++|+.++++++.|||.++|+++.++...+++
T Consensus        78 ~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~  157 (626)
T KOG1175|consen   78 GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSA  157 (626)
T ss_pred             CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCH
Confidence            48888988742      348999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEEcccchHHH---------HHHhccCc--------------------------------------
Q 048729          102 HTLSVLLQHSESKLVFVDHLHTYLL---------LEALSLFP--------------------------------------  134 (330)
Q Consensus       102 ~~l~~~l~~~~~~~i~~~~~~~~~~---------~~~~~~~~--------------------------------------  134 (330)
                      ..+...+...+++++++........         ..+.....                                      
T Consensus       158 ~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~~~~~~~~  237 (626)
T KOG1175|consen  158 KELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKASPEHPCVPVK  237 (626)
T ss_pred             HHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcCCCCCceecC
Confidence            9999999999999999875432211         11000000                                      


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       238 ~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p  317 (626)
T KOG1175|consen  238 AEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPP  317 (626)
T ss_pred             ccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       318 ~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEt  397 (626)
T KOG1175|consen  318 FDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTET  397 (626)
T ss_pred             CChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeecc
Confidence                                                                                            


Q ss_pred             ---------hH-HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecC---cccccccCCchhhhccccC--C
Q 048729          135 ---------QR-ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGG---CVTVGYFKDKEATRRCISD--N  199 (330)
Q Consensus       135 ---------~~-~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~--~  199 (330)
                               .. +..+++.+.|..|. .+.|.|+ +|++++.++ +.|+|++..+   +.+++||++++.....+..  .
T Consensus       398 G~~~i~~~~g~~p~~pg~~~~p~~g~-~v~i~de-~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~p  474 (626)
T KOG1175|consen  398 GGICITPKPGKLPIKPGSAGKPFPGY-DVQILDE-NGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFP  474 (626)
T ss_pred             CceeeeccCCCCCcCccccCCCCCCc-ceEEECC-CCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccCC
Confidence                     11 34556677788887 8999999 999998876 7799999965   6789999999955554433  7


Q ss_pred             CeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCC
Q 048729          200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTK  279 (330)
Q Consensus       200 g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  279 (330)
                      |+|.|||.+++|++|++++.||.||+++++|.|+++.|||+++.+||.|.|++|++.+++..++.+.+||+++++.. ..
T Consensus       475 g~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~-~~  553 (626)
T KOG1175|consen  475 GYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSH-DP  553 (626)
T ss_pred             ceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCC-Ch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999943 22


Q ss_pred             CCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          280 KPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       280 ~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ....++|++.+++.+.+++.|+.|.+++.||+|.+||+.|+.|++.+.+
T Consensus       554 ~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g  602 (626)
T KOG1175|consen  554 EQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASG  602 (626)
T ss_pred             HHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhcc
Confidence            2556888899999999999999999999999999999999999998753

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=7.4e-42  Score=323.87  Aligned_cols=296  Identities=24%  Similarity=0.301  Sum_probs=230.4

Q ss_pred             HHHHHHHHHHhcCCCcEEEeCC----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           17 TLGFLERAAAAYTDCPSLVYNN----TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        17 ~~~~l~~~~~~~p~~~a~~~~~----~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      +.++|.+.++++|+++|+++.+    +++||+||.++++++|++|.+.  ++||+|+++++|++++++.+|||+++|+++
T Consensus         4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~   81 (525)
T PRK05851          4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV   81 (525)
T ss_pred             HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence            7899999999999999999876    7899999999999999999977  799999999999999999999999999986


Q ss_pred             eecCCC-------CCHHHHHHHHHhcCCcEEEEcccchHHHHHHh----------------c-c----Cc----------
Q 048729           93 NNINTR-------LDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL----------------S-L----FP----------  134 (330)
Q Consensus        93 ~~l~~~-------~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~----------------~-~----~~----------  134 (330)
                      ++++..       ...+.+.++++..++++++++......+....                . .    ..          
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS  161 (525)
T PRK05851         82 SILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSSVTVHDLATAAHTNRSASLTPPDSGGPAVLQGTA  161 (525)
T ss_pred             cCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcccccccccccccccccccCCCCCCCCeEEEEeCC
Confidence            543321       12244556788888888888654332211000                0 0    00          


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       162 GTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i  241 (525)
T PRK05851        162 GSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWL  241 (525)
T ss_pred             CCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------------------------hHHHH-----------------------------
Q 048729          135 ----------------------------------------------QRARL-----------------------------  139 (330)
Q Consensus       135 ----------------------------------------------~~~~~-----------------------------  139 (330)
                                                                    ....+                             
T Consensus       242 ~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~  321 (525)
T PRK05851        242 SDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTV  321 (525)
T ss_pred             HHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEe
Confidence                                                          00000                             


Q ss_pred             ----------------------hhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcccc
Q 048729          140 ----------------------KARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS  197 (330)
Q Consensus       140 ----------------------~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~  197 (330)
                                            ..++|.|++|. +++|+|++.+.+++.+  +.|||+++|++++.||+++++.+     
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~-~v~i~d~~~~~~~~~g--~~GEl~v~g~~~~~GY~~~~~~~-----  393 (525)
T PRK05851        322 PVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGM-EVRISPGDGAAGVAGR--EIGEIEIRGASMMSGYLGQAPID-----  393 (525)
T ss_pred             cCCCCCceeeeeccccCcccceeeeecCCCCCc-EEEEECCCCCccCCCC--CeEEEEEecCchhhccccCCccC-----
Confidence                                  01234444453 5555665333456666  78999999999999999988643     


Q ss_pred             CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCccc
Q 048729          198 DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLEL  277 (330)
Q Consensus       198 ~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  277 (330)
                      .+|||+|||+++++ +|.++|+||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.+.++++.....  
T Consensus       394 ~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~--  470 (525)
T PRK05851        394 PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRG--  470 (525)
T ss_pred             CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecC--
Confidence            37899999999997 799999999999999999999999999999999999999999998877777776666544211  


Q ss_pred             CCCCCHHHHHHHHHhcCCCC--CCCceEEEcc--CCCCCCCCcccHHHHHHHhhh
Q 048729          278 TKKPTEKEIIEYCRARLPRY--MVPRKVVFSE--ELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       278 ~~~~~~~~l~~~l~~~l~~~--~~p~~~~~v~--~lP~t~~GKv~r~~l~~~~~~  328 (330)
                         .+.+++.+.++++++.+  ++|..+++++  +||+|++||++|++|++.+++
T Consensus       471 ---~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        471 ---PDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             ---cchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHHHh
Confidence               33456677777777776  8999999998  899999999999999998865

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.8e-41  Score=316.22  Aligned_cols=305  Identities=23%  Similarity=0.321  Sum_probs=247.9

Q ss_pred             HHHHH-HHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeec
Q 048729           17 TLGFL-ERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNI   95 (330)
Q Consensus        17 ~~~~l-~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l   95 (330)
                      +.+.+ ...++.+|+++|+.+.++.+||+||.+.++++|.+|.+.|+++||+|++++++++++++.++||+++|++++|+
T Consensus         4 ~~~~~~~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~   83 (458)
T PRK09029          4 FSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL   83 (458)
T ss_pred             hhcChHHHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeec
Confidence            33433 45588999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcccchHHH--HHH---------hccC-----c-------------------------
Q 048729           96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYLL--LEA---------LSLF-----P-------------------------  134 (330)
Q Consensus        96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~--~~~---------~~~~-----~-------------------------  134 (330)
                      ++.++++++..++++.+++++++........  ...         ....     .                         
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~  163 (458)
T PRK09029         84 NPQLPQPLLEELLPSLTLDFALVLEGENTFSALTSLHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLAS  163 (458)
T ss_pred             CCCCCHHHHHHHHHhcCCCEEEEcCcccchhhccccccccccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHH
Confidence            9999999999999999999998765331100  000         0000     0                         


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       164 ~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~~~~~~~i~~~t~~~~~P~~~~~l~~~~~~~~~l~  243 (458)
T PRK09029        164 AEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDKQPLEQALAGCTHASLVPTQLWRLLDNRSEPLSLK  243 (458)
T ss_pred             HHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCChHHHHHHHhhceeeecChHHHHHHHhccccCCcce
Confidence                                                                                            


Q ss_pred             -----------hHHHHhhccCC---cccCceeEEEeC---C-----CCCcccCCCCc--eecEEEEecCcccccccCCch
Q 048729          135 -----------QRARLKARQGV---KTVGLAEVDVVN---P-----ETGESVKRDGV--SLGEVVLRGGCVTVGYFKDKE  190 (330)
Q Consensus       135 -----------~~~~~~~~~G~---~~~g~te~~i~d---~-----~~g~~~~~~~~--~~Gel~v~~~~~~~gy~~~~~  190 (330)
                                 .........|.   ..||.||+...-   .     .-|++++.-..  ..|||+++|+.++.||+++++
T Consensus       244 ~i~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~G~~~~~~~~~i~~gel~v~g~~~~~gY~~~~~  323 (458)
T PRK09029        244 AVLLGGAAIPVELTEQAEQQGIRCWCGYGLTEMASTVCAKRADGLAGVGSPLPGREVKLVDGEIWLRGASLALGYWRQGQ  323 (458)
T ss_pred             EEEECCCCCCHHHHHHHHHcCCcEeccccccccCcceeccCCCCCCCCCCCCCCCEEEEeCCEEEEecCceeeeeecCcc
Confidence                       00000011122   237887764211   1     12334332210  239999999999999999887


Q ss_pred             hhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEE
Q 048729          191 ATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVS  270 (330)
Q Consensus       191 ~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~  270 (330)
                      .+..... +|||+|||+|++| +|.+++.||.||+||++|.+|+|.+||+.+.++|+|.+++|++.+++..++.++++++
T Consensus       324 ~~~~~~~-~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~  401 (458)
T PRK09029        324 LVPLVND-EGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVE  401 (458)
T ss_pred             ccccccC-CCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEE
Confidence            7654443 8999999999999 9999999999999999999999999999999999999999999999888889999888


Q ss_pred             ecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          271 LKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       271 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      ...+      .+.+++.++++++|++|++|..+++++++|+|++||++|+.|++++.+.
T Consensus       402 ~~~~------~~~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~  454 (458)
T PRK09029        402 SDSE------AAVVNLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQ  454 (458)
T ss_pred             cCcc------cCHHHHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhc
Confidence            6633      5678999999999999999999999999999999999999999998753

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.3e-41  Score=317.84  Aligned_cols=302  Identities=25%  Similarity=0.399  Sum_probs=249.4

Q ss_pred             HHHHHhcCCCcEEEe--CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCC
Q 048729           22 ERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRL   99 (330)
Q Consensus        22 ~~~~~~~p~~~a~~~--~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~   99 (330)
                      ...++.+|+++|+++  .++.+||.||...+.+++++|.+.|+++||+|++++++++++++.++||+++|++++++++.+
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~   83 (511)
T PRK13391          4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHL   83 (511)
T ss_pred             hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccccc
Confidence            457788999999987  578899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCcEEEEcccchHHHHHH----------------------------hc-----c---C---c------
Q 048729          100 DAHTLSVLLQHSESKLVFVDHLHTYLLLEA----------------------------LS-----L---F---P------  134 (330)
Q Consensus       100 ~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~----------------------------~~-----~---~---~------  134 (330)
                      +.+.+.++++..+++++++++.....+...                            ..     .   .   .      
T Consensus        84 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TS  163 (511)
T PRK13391         84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLPATPIADESLGTDMLYSS  163 (511)
T ss_pred             CHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcCCCCCCCCCcccccEEEECC
Confidence            999999999999999998864322111000                            00     0   0   0      


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       164 GtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i  243 (511)
T PRK13391        164 GTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLALI  243 (511)
T ss_pred             CCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECCCCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             -----------------------------------------------hHHHHhhccCC---cccCcee------------
Q 048729          135 -----------------------------------------------QRARLKARQGV---KTVGLAE------------  152 (330)
Q Consensus       135 -----------------------------------------------~~~~~~~~~G~---~~~g~te------------  152 (330)
                                                                     ....+....|.   ..||.||            
T Consensus       244 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~  323 (511)
T PRK13391        244 EEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEW  323 (511)
T ss_pred             HHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccc
Confidence                                                           00000001121   1255555            


Q ss_pred             --------------EEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCC-CeEEeCceEEEecCceEE
Q 048729          153 --------------VDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDN-GWFYTGDIGVMHADGYVE  217 (330)
Q Consensus       153 --------------~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~-g~~~TGD~~~~~~~G~l~  217 (330)
                                    +.++|+ +|.+++.+  +.|||+++|+ ++.||+++++.+...+..+ +||+|||+++++++|.++
T Consensus       324 ~~~~~~vG~~~~g~~~i~d~-~~~~~~~g--~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~  399 (511)
T PRK13391        324 LAHPGTVGRAMFGDLHILDD-DGAELPPG--EPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLY  399 (511)
T ss_pred             cccCCCcCCcccceEEEECC-CCCCCCCC--CceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEE
Confidence                          344555 67777777  7899999999 8889999998887777544 999999999999999999


Q ss_pred             EEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC
Q 048729          218 IKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY  297 (330)
Q Consensus       218 ~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~  297 (330)
                      +.||.||++|++|.+|++.+||+.+.+||.|.++++++..++..++.++++++...+.... ....+++.++++++++.+
T Consensus       400 ~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~  478 (511)
T PRK13391        400 LTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPG-PALAAELIAFCRQRLSRQ  478 (511)
T ss_pred             EeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcc-cchHHHHHHHHHhhcccC
Confidence            9999999999999999999999999999999999999998888788888888876653211 134588999999999999


Q ss_pred             CCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          298 MVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       298 ~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +.|..+.+++++|+|++||++|+.|++.+.+
T Consensus       479 ~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~  509 (511)
T PRK13391        479 KCPRSIDFEDELPRLPTGKLYKRLLRDRYWG  509 (511)
T ss_pred             cCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence            9999999999999999999999999998864

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=3.3e-41  Score=318.37  Aligned_cols=303  Identities=26%  Similarity=0.371  Sum_probs=257.1

Q ss_pred             HHHHHHHH-HHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeec
Q 048729           17 TLGFLERA-AAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNI   95 (330)
Q Consensus        17 ~~~~l~~~-~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l   95 (330)
                      ..+++.+. ++.+||++|+++.++.+||.||.+.++++|++|.+.|+++||+|+++++|+++++..++||+++|++++|+
T Consensus         6 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l   85 (508)
T TIGR02262         6 AEDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVAL   85 (508)
T ss_pred             HHHHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeec
Confidence            45566665 57799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc-----------------------------------cC-c-----
Q 048729           96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS-----------------------------------LF-P-----  134 (330)
Q Consensus        96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-----------------------------------~~-~-----  134 (330)
                      ++.++.+.+.++++..++++++++......+.....                                   .. .     
T Consensus        86 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  165 (508)
T TIGR02262        86 NTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATESEQFKPAATQADDPAF  165 (508)
T ss_pred             cCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhhcCCCccCCCCCCCCCcEE
Confidence            999999999999999999999886543321111000                                   00 0     


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       166 i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~  245 (508)
T TIGR02262       166 WLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVF  245 (508)
T ss_pred             EEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHH
Confidence                                                                                            


Q ss_pred             ------------------------------------------------hHHH----------------------------
Q 048729          135 ------------------------------------------------QRAR----------------------------  138 (330)
Q Consensus       135 ------------------------------------------------~~~~----------------------------  138 (330)
                                                                      ....                            
T Consensus       246 ~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~  325 (508)
T TIGR02262       246 DRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPG  325 (508)
T ss_pred             HHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCcc
Confidence                                                            0000                            


Q ss_pred             --HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceE
Q 048729          139 --LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYV  216 (330)
Q Consensus       139 --~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l  216 (330)
                        ...+.|.|++|. +++++|+ ++.+++.+  +.|||+++|++++.||+++++.+...|. ++||+|||+++++++|.+
T Consensus       326 ~~~~~~~G~~~~g~-~v~i~d~-~~~~~~~g--~~Gel~i~~~~~~~gY~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~~  400 (508)
T TIGR02262       326 DVRYGTSGKPVPGY-RLRLVGD-GGQDVAAG--EPGELLISGPSSATMYWNNRAKTRDTFQ-GEWTRSGDKYVRNDDGSY  400 (508)
T ss_pred             CCCCCCcCCCCCCc-EEEEECC-CCCCCCCC--CeeEEEEecCccccccCCCHHHhHhhhh-cCceeccceEEEcCCccE
Confidence              012345566664 7788886 88888888  8899999999999999999998888876 899999999999999999


Q ss_pred             EEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCC
Q 048729          217 EIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPR  296 (330)
Q Consensus       217 ~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~  296 (330)
                      ++.||.+|++|++|.++++.+||+.+.++++|.++++++..+....+++.+++++.++... .....+++.+.++++|++
T Consensus       401 ~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~i~~~~~~~l~~  479 (508)
T TIGR02262       401 TYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDI-DTALETELKEHVKDRLAP  479 (508)
T ss_pred             EEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCcc-ccccHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999998877667788888887765431 114578999999999999


Q ss_pred             CCCCceEEEccCCCCCCCCcccHHHHHHH
Q 048729          297 YMVPRKVVFSEELPKTSTGKIQKYLLREF  325 (330)
Q Consensus       297 ~~~p~~~~~v~~lP~t~~GKv~r~~l~~~  325 (330)
                      ++.|..+.+++++|+|++||++|++|+++
T Consensus       480 ~~~p~~i~~~~~iP~t~~gKi~r~~l~~~  508 (508)
T TIGR02262       480 YKYPRWIVFVDDLPKTATGKIQRFKLREG  508 (508)
T ss_pred             CCCCceEEEecCCCCCCCCcEehhhccCC
Confidence            99999999999999999999999998753

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.9e-41  Score=317.83  Aligned_cols=307  Identities=28%  Similarity=0.398  Sum_probs=253.9

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      .+|+.++|.+.++++|+++|+.+.++.+||.||.+.++++|++|.+.|+++||+|+++++|++++++.++||+++|++++
T Consensus         2 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v   81 (533)
T PRK07798          2 AWNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPV   81 (533)
T ss_pred             cccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEE
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH--------------------------------------------
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA--------------------------------------------  129 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~--------------------------------------------  129 (330)
                      ++++.++.+.+.++++..++++++++......+...                                            
T Consensus        82 ~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (533)
T PRK07798         82 NVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDFGER  161 (533)
T ss_pred             ecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCCcCCCCCC
Confidence            999999999999999999999988754321111000                                            


Q ss_pred             -------------------------------------h--------ccC-------c-----------------------
Q 048729          130 -------------------------------------L--------SLF-------P-----------------------  134 (330)
Q Consensus       130 -------------------------------------~--------~~~-------~-----------------------  134 (330)
                                                           .        ...       .                       
T Consensus       162 ~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l  241 (533)
T PRK07798        162 SPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAAL  241 (533)
T ss_pred             CCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHHHHHHH
Confidence                                                 0        000       0                       


Q ss_pred             ----------------------------------------------------------------------hHHHHhhcc-
Q 048729          135 ----------------------------------------------------------------------QRARLKARQ-  143 (330)
Q Consensus       135 ----------------------------------------------------------------------~~~~~~~~~-  143 (330)
                                                                                            ....+.... 
T Consensus       242 ~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~  321 (533)
T PRK07798        242 FSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSVKEALLELLP  321 (533)
T ss_pred             hcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence                                                                                  000000001 


Q ss_pred             CC---cccCcee--------------------------EEEeCCCCCcccCCCCcee--cEEEEecCcccccccCCchhh
Q 048729          144 GV---KTVGLAE--------------------------VDVVNPETGESVKRDGVSL--GEVVLRGGCVTVGYFKDKEAT  192 (330)
Q Consensus       144 G~---~~~g~te--------------------------~~i~d~~~g~~~~~~~~~~--Gel~v~~~~~~~gy~~~~~~~  192 (330)
                      |.   ..||.||                          +.++++ ++.+++.+  +.  |+++ .++.++.||++++..+
T Consensus       322 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~-~~~~~~~g--~~~~g~l~-~~~~~~~gy~~~~~~t  397 (533)
T PRK07798        322 NVVLTDSIGSSETGFGGSGTVAKGAVHTGGPRFTIGPRTVVLDE-DGNPVEPG--SGEIGWIA-RRGHIPLGYYKDPEKT  397 (533)
T ss_pred             CCeEEeeecccccccccccCCCCCCccCCCCccCCCceEEEECC-CCCCCCCC--CCCeeEEE-eecCccccccCChhhh
Confidence            22   2255555                          333444 55566655  44  6665 5568999999999888


Q ss_pred             hccccC---CCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEE
Q 048729          193 RRCISD---NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFV  269 (330)
Q Consensus       193 ~~~~~~---~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v  269 (330)
                      .+.|..   ++||+|||++++|++|.+++.||.||++|++|++|++.+||+.+.++|+|.++++++..++..++.+.+++
T Consensus       398 ~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v  477 (533)
T PRK07798        398 AETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVV  477 (533)
T ss_pred             HHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEE
Confidence            777642   35999999999999999999999999999999999999999999999999999999998877778888888


Q ss_pred             EecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          270 SLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       270 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++.++..    .+.+++.++++++|+.|.+|..+++++++|+|++||++|+.|++++.+
T Consensus       478 ~~~~~~~----~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~~  532 (533)
T PRK07798        478 QLREGAR----PDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAAE  532 (533)
T ss_pred             EECCCCC----CCHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHHHhhhhcc
Confidence            8877654    578999999999999999999999999999999999999999998864

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-41  Score=317.36  Aligned_cols=289  Identities=27%  Similarity=0.363  Sum_probs=244.2

Q ss_pred             HHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHH
Q 048729           24 AAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHT  103 (330)
Q Consensus        24 ~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~  103 (330)
                      .+...++++|+.+.++++||+||.++++++|..|.     ++|+|++++++++++++.++||+++|++++|+++.++.++
T Consensus         9 ~~~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~   83 (471)
T PRK07787          9 VAAAADIADAVRIGGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAE   83 (471)
T ss_pred             hhcccCCceEEEeCCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHH
Confidence            45667999999999999999999999999999995     5799999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEEcccchH-H----------------------------------------------HHHHh----c-
Q 048729          104 LSVLLQHSESKLVFVDHLHTY-L----------------------------------------------LLEAL----S-  131 (330)
Q Consensus       104 l~~~l~~~~~~~i~~~~~~~~-~----------------------------------------------~~~~~----~-  131 (330)
                      +.+++++.+++++++++.... .                                              +....    . 
T Consensus        84 l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~  163 (471)
T PRK07787         84 RRHILADSGAQAWLGPAPDDPAGLPHVPVRLHARSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEA  163 (471)
T ss_pred             HHHHHHhcCCCEEEecCCcccccccceeeeccccccccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHh
Confidence            999999999999988642100 0                                              00000    0 


Q ss_pred             -----------cCc------------------------------------------------------------------
Q 048729          132 -----------LFP------------------------------------------------------------------  134 (330)
Q Consensus       132 -----------~~~------------------------------------------------------------------  134 (330)
                                 ..+                                                                  
T Consensus       164 ~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~t~~~~~P~~~~~l~~~~~~~~~l~~l  243 (471)
T PRK07787        164 WQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALSEGGTLYFGVPTVWSRIAADPEAARALRGA  243 (471)
T ss_pred             cCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHhhCceEEEcchHHHHHHHhCccccccccce
Confidence                       000                                                                  


Q ss_pred             -------------hH------------------------------HHHhhccCCcccCceeEEEeCCCCCcccCCCCcee
Q 048729          135 -------------QR------------------------------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSL  171 (330)
Q Consensus       135 -------------~~------------------------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~  171 (330)
                                   ..                              .....++|.++.|. +++|+|+ ++.+++..+...
T Consensus       244 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~-~~~i~d~-~~~~~~~~~~~~  321 (471)
T PRK07787        244 RLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGV-ETRLVDE-DGGPVPHDGETV  321 (471)
T ss_pred             eEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCCcccCCcccccCCCc-EEEEECC-CCCCCCCCCCCc
Confidence                         00                              00112356666774 7888887 677776432247


Q ss_pred             cEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecC-CCeEEeCCeecCHHHHHHHHhcCcCcce
Q 048729          172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRS-KDVIISGGENICSAEVESVLYSITAVNE  250 (330)
Q Consensus       172 Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~-dd~ik~~G~~v~~~~iE~~l~~~~~v~~  250 (330)
                      |||+++|++++.||+++++.+.+.|..+|||+|||++++|+||.+++.||. |+++|++|++|++.+||+.|..++.|.+
T Consensus       322 Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~  401 (471)
T PRK07787        322 GELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVRE  401 (471)
T ss_pred             eEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcce
Confidence            999999999999999999999988887899999999999999999999996 8999999999999999999999999999


Q ss_pred             EEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHH
Q 048729          251 AAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREF  325 (330)
Q Consensus       251 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~  325 (330)
                      ++|++.++...++.++++++....      .+.+++.+.++++|++++.|..++++++||+|++||++|++|+++
T Consensus       402 ~~v~~~~~~~~~~~~~a~v~~~~~------~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~~  470 (471)
T PRK07787        402 AAVVGVPDDDLGQRIVAYVVGADD------VAADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLSE  470 (471)
T ss_pred             EEEEcccccccCeEEEEEEEeCCC------CCHHHHHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhccC
Confidence            999999888778899999887332      567899999999999999999999999999999999999999764

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-41  Score=338.06  Aligned_cols=298  Identities=18%  Similarity=0.199  Sum_probs=241.3

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      ....++.++|.++++.+||++|+++.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav  523 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAV  523 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCE
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH--------------------------------Hh---------
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE--------------------------------AL---------  130 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~--------------------------------~~---------  130 (330)
                      ++|+++.   .++.++++..+++++++++.....+..                                ..         
T Consensus       524 ~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (994)
T PRK07868        524 AVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQLPGRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVELPGWYRP  600 (994)
T ss_pred             EEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhcCceEEEecCCccccccCCcchhhhhhhhcCcccccCCcccCC
Confidence            9999984   678899999999999987543221100                                00         


Q ss_pred             c-----cC--------c---------------------------------------------------------------
Q 048729          131 S-----LF--------P---------------------------------------------------------------  134 (330)
Q Consensus       131 ~-----~~--------~---------------------------------------------------------------  134 (330)
                      .     ..        .                                                               
T Consensus       601 ~~~~~dd~a~IiyTgStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~  680 (994)
T PRK07868        601 NPGLARDLAFIAFSTAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRG  680 (994)
T ss_pred             CCCCCCccEEEEEeCCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCC
Confidence            0     00        0                                                               


Q ss_pred             --------------------------------------------------------h-HHH-------------------
Q 048729          135 --------------------------------------------------------Q-RAR-------------------  138 (330)
Q Consensus       135 --------------------------------------------------------~-~~~-------------------  138 (330)
                                                                              . ...                   
T Consensus       681 ~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~  760 (994)
T PRK07868        681 LDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIGSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVL  760 (994)
T ss_pred             CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEecCCCCHHHHHHHHHHhCchheeeeeecccccccc
Confidence                                                                    0 000                   


Q ss_pred             ------HhhccCCcccCceeEEEe-----------CCCCC--cccCCCCceecEEEEecCcccccccCCchhh--hcccc
Q 048729          139 ------LKARQGVKTVGLAEVDVV-----------NPETG--ESVKRDGVSLGEVVLRGGCVTVGYFKDKEAT--RRCIS  197 (330)
Q Consensus       139 ------~~~~~G~~~~g~te~~i~-----------d~~~g--~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~--~~~~~  197 (330)
                            ...++|+|++|..+++|.           ++ +|  +.++.+  +.|||+++++.    |+ +|+.+  ...|.
T Consensus       761 ~~~~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~-~G~~~~~~~g--e~Gel~~~~~~----~~-~p~~t~~~~~~~  832 (994)
T PRK07868        761 ANVSGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDD-RGFVRRAEVN--EVGVLLARARG----PI-DPTASVKRGVFA  832 (994)
T ss_pred             cccCCCCCcccCCccCCCCceeEEEecCcCCceeecC-CceEEEcCCC--CceEEEEecCC----CC-ChhhhhHhcccc
Confidence                  012456666663234332           22 34  345555  78999999874    33 34332  22232


Q ss_pred             -CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcc
Q 048729          198 -DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLE  276 (330)
Q Consensus       198 -~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  276 (330)
                       .+|||+|||+|++|+||+++|+||.||+||++|.+|+|.+||+.|.+||+|.+++|++.+++. ++.++++|++.++..
T Consensus       833 ~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~  911 (994)
T PRK07868        833 PADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAA  911 (994)
T ss_pred             cCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCc
Confidence             379999999999999999999999999999999999999999999999999999999998875 578889998887654


Q ss_pred             cCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHh
Q 048729          277 LTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFA  326 (330)
Q Consensus       277 ~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~  326 (330)
                          .+.+++++++++ ++.|++|+.|+++++||+|++||++|++|++..
T Consensus       912 ----~~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~  956 (994)
T PRK07868        912 ----ITAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAG  956 (994)
T ss_pred             ----CCHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcC
Confidence                677899999986 999999999999999999999999999998753

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=8.3e-41  Score=317.95  Aligned_cols=304  Identities=29%  Similarity=0.445  Sum_probs=252.9

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      ..++.++|.+.++.+|+++|+.+.++.+||.||.++++++|++|.+.|+++||+|+++++|++++++.++||+++|++++
T Consensus        20 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v   99 (541)
T TIGR03205        20 RGTLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVV   99 (541)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEE
Confidence            55899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccch--HHH---------------------------------------HH----
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHT--YLL---------------------------------------LE----  128 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--~~~---------------------------------------~~----  128 (330)
                      |+++..+..++.++++..+++++++++...  ..+                                       ..    
T Consensus       100 ~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (541)
T TIGR03205       100 HLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKG  179 (541)
T ss_pred             ecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHhc
Confidence            999999999999999999999998753100  000                                       00    


Q ss_pred             ----------------------------------------------Hh--------c---cC----c-------------
Q 048729          129 ----------------------------------------------AL--------S---LF----P-------------  134 (330)
Q Consensus       129 ----------------------------------------------~~--------~---~~----~-------------  134 (330)
                                                                    ..        .   ..    +             
T Consensus       180 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~  259 (541)
T TIGR03205       180 AAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLR  259 (541)
T ss_pred             CCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHHHHHH
Confidence                                                          00        0   00    0             


Q ss_pred             --------------------------------------------------------------------hHHHHhhccCC-
Q 048729          135 --------------------------------------------------------------------QRARLKARQGV-  145 (330)
Q Consensus       135 --------------------------------------------------------------------~~~~~~~~~G~-  145 (330)
                                                                                          ....+....|. 
T Consensus       260 ~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~  339 (541)
T TIGR03205       260 SLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKTGLK  339 (541)
T ss_pred             HHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHHHHhCCC
Confidence                                                                                00000001111 


Q ss_pred             --cccCcee---------------------------EEEeC-CCCCcccCCCCceecEEEEecCcccccccCCchhhhcc
Q 048729          146 --KTVGLAE---------------------------VDVVN-PETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC  195 (330)
Q Consensus       146 --~~~g~te---------------------------~~i~d-~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~  195 (330)
                        ..||.||                           +++.+ .+++++++.+  +.|||+++|++++.||+++++.+.+.
T Consensus       340 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~  417 (541)
T TIGR03205       340 LKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPG--EVGELRIRGPNVTRGYWNRPEESAEA  417 (541)
T ss_pred             eecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCC--CeeEEEEecCCccccccCChhhhHhh
Confidence              1244444                           33332 1256677766  78999999999999999999988888


Q ss_pred             ccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCc
Q 048729          196 ISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDL  275 (330)
Q Consensus       196 ~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  275 (330)
                      |. ++||+|||+++++++|+++++||.||++|++|++|++.+||+.+.++++|.+++|++..++..++.+.+++++..+.
T Consensus       418 ~~-~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  496 (541)
T TIGR03205       418 FV-GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGA  496 (541)
T ss_pred             hc-cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCC
Confidence            77 78999999999999999999999999999999999999999999999999999999998887778888888887653


Q ss_pred             ccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHH
Q 048729          276 ELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR  323 (330)
Q Consensus       276 ~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~  323 (330)
                      ..   .+.+++.+.++++|+++.+|..++++++||+|++||++|++|+
T Consensus       497 ~~---~~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       497 KP---FSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR  541 (541)
T ss_pred             Cc---CCHHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence            21   4578999999999999999999999999999999999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=3.3e-41  Score=326.65  Aligned_cols=308  Identities=20%  Similarity=0.304  Sum_probs=237.7

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeC----C-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHh
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYN----N-----TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGV   85 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~   85 (330)
                      .|+.++|.+.++.+||++|+.+.    +     ..+||+||.++++++|++|.+.|+++||+|+++++|+++|++++|||
T Consensus        45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~  124 (666)
T PLN02614         45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC  124 (666)
T ss_pred             CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            49999999999999999999841    1     34899999999999999999999999999999999999999999999


Q ss_pred             hhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHH--------------------------------------
Q 048729           86 PMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLL--------------------------------------  127 (330)
Q Consensus        86 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~--------------------------------------  127 (330)
                      +++|++++|+++.++++++.++++.+++++++++......+.                                      
T Consensus       125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~  204 (666)
T PLN02614        125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWD  204 (666)
T ss_pred             HHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHH
Confidence            999999999999999999999999999999998643221110                                      


Q ss_pred             HH---hc--c--C----c--------------------------------------------------------------
Q 048729          128 EA---LS--L--F----P--------------------------------------------------------------  134 (330)
Q Consensus       128 ~~---~~--~--~----~--------------------------------------------------------------  134 (330)
                      ..   ..  .  .    +                                                              
T Consensus       205 ~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~  284 (666)
T PLN02614        205 EFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDR  284 (666)
T ss_pred             HHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHH
Confidence            00   00  0  0    0                                                              


Q ss_pred             --------------------------------------------hH----HH----------------------------
Q 048729          135 --------------------------------------------QR----AR----------------------------  138 (330)
Q Consensus       135 --------------------------------------------~~----~~----------------------------  138 (330)
                                                                  ..    ..                            
T Consensus       285 ~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  364 (666)
T PLN02614        285 VIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQS  364 (666)
T ss_pred             HHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCC
Confidence                                                        00    00                            


Q ss_pred             -------------------Hhh---------------------cc-CC---cccCcee----------------------
Q 048729          139 -------------------LKA---------------------RQ-GV---KTVGLAE----------------------  152 (330)
Q Consensus       139 -------------------~~~---------------------~~-G~---~~~g~te----------------------  152 (330)
                                         ...                     .. +.   ..||.||                      
T Consensus       365 ~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p  444 (666)
T PLN02614        365 HVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPP  444 (666)
T ss_pred             CcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCc
Confidence                               000                     00 11   1256555                      


Q ss_pred             -----EEEeC-CC-CCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCe
Q 048729          153 -----VDVVN-PE-TGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDV  225 (330)
Q Consensus       153 -----~~i~d-~~-~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~  225 (330)
                           ++|+| ++ .+.+++.+  +.|||+++|++++.|||++|+.+.+.|. +|||+|||+|++|+||+++|+||.+|+
T Consensus       445 ~pg~evki~d~~~~~~~~~~~g--~~GEl~vrGp~v~~GY~~~pe~T~~~f~-dGw~~TGDlg~~d~dG~l~i~gR~kd~  521 (666)
T PLN02614        445 VPNVDIRLESVPEMEYDALAST--PRGEICIRGKTLFSGYYKREDLTKEVLI-DGWLHTGDVGEWQPNGSMKIIDRKKNI  521 (666)
T ss_pred             CCceEEEEeeecccCcccCCCC--CCceEEEcCCcccccccCCHHHhhhhhc-cCCcccceEEEEcCCCCEEEEEcchhc
Confidence                 33333 11 12345444  6799999999999999999999999886 899999999999999999999999999


Q ss_pred             EEe-CCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcc------c--CCC--------CCHHHHHH
Q 048729          226 IIS-GGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLE------L--TKK--------PTEKEIIE  288 (330)
Q Consensus       226 ik~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~------~--~~~--------~~~~~l~~  288 (330)
                      ||+ +|++|+|.+||++|.+||+|.+++|++....   ..++|+|++....-      .  ...        ...+.+.+
T Consensus       522 ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~---~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  598 (666)
T PLN02614        522 FKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE---SFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILG  598 (666)
T ss_pred             eecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHH
Confidence            995 7999999999999999999999999998632   14778887654310      0  000        01122233


Q ss_pred             HH-----HhcCCCCCCCceEEEcc-CC-----CCCCCCcccHHHHHHHhhh
Q 048729          289 YC-----RARLPRYMVPRKVVFSE-EL-----PKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       289 ~l-----~~~l~~~~~p~~~~~v~-~l-----P~t~~GKv~r~~l~~~~~~  328 (330)
                      .+     +++|+.+++++.|.+++ .|     ..||++|++|..+.+.|++
T Consensus       599 ~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~  649 (666)
T PLN02614        599 ELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQS  649 (666)
T ss_pred             HHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHH
Confidence            23     35699999999999876 33     4899999999999998864

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-40  Score=311.96  Aligned_cols=290  Identities=28%  Similarity=0.449  Sum_probs=243.9

Q ss_pred             cEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhc
Q 048729           32 PSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHS  111 (330)
Q Consensus        32 ~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~  111 (330)
                      .++.+.++++||+||.+.+.+++++|.+.|+++||+|+++++|+++++..++||+++|+.++|+++.++.+.+.++++..
T Consensus         3 ~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~   82 (502)
T PRK08276          3 VIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDS   82 (502)
T ss_pred             eEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcC
Confidence            45566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEcccchHHHHHH-------------------------------hc-----------------------------
Q 048729          112 ESKLVFVDHLHTYLLLEA-------------------------------LS-----------------------------  131 (330)
Q Consensus       112 ~~~~i~~~~~~~~~~~~~-------------------------------~~-----------------------------  131 (330)
                      +++++++++.....+...                               ..                             
T Consensus        83 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~~~  162 (502)
T PRK08276         83 GAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPL  162 (502)
T ss_pred             CCCEEEEccchhhHHHHHhhhccccccEEEEeCCCCCccccHHHHHhcCCCCCCCCCCcceEEEECCCCCCCCceEEEcc
Confidence            999998865333221100                               00                             


Q ss_pred             -------------------cC--c--------------------------------------------------------
Q 048729          132 -------------------LF--P--------------------------------------------------------  134 (330)
Q Consensus       132 -------------------~~--~--------------------------------------------------------  134 (330)
                                         ..  .                                                        
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P  242 (502)
T PRK08276        163 PGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVP  242 (502)
T ss_pred             CCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEehH
Confidence                               00  0                                                        


Q ss_pred             -----------------------------------hHHH-------------------------------HhhccCCccc
Q 048729          135 -----------------------------------QRAR-------------------------------LKARQGVKTV  148 (330)
Q Consensus       135 -----------------------------------~~~~-------------------------------~~~~~G~~~~  148 (330)
                                                         ....                               ...++|.|+ 
T Consensus       243 ~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-  321 (502)
T PRK08276        243 TMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-  321 (502)
T ss_pred             HHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-
Confidence                                               0000                               001233344 


Q ss_pred             CceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEe
Q 048729          149 GLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIIS  228 (330)
Q Consensus       149 g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~  228 (330)
                      +. +++++|+ ++.+++.+  +.|||+++|+.++.||+++++.+...+.++|||+|||+++++++|.+++.||.||++|+
T Consensus       322 ~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~  397 (502)
T PRK08276        322 LG-EVRILDE-DGNELPPG--EIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS  397 (502)
T ss_pred             cc-EEEEECC-CCCCCcCC--CceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe
Confidence            32 5566676 67778777  78999999999999999999999988886799999999999999999999999999999


Q ss_pred             CCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccC
Q 048729          229 GGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEE  308 (330)
Q Consensus       229 ~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~  308 (330)
                      +|.+|++.+||..+.++|+|.++++++..++..++.+.++++..++.... ....+++.+.++++++.++.|..++++++
T Consensus       398 ~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~i~~~~~~~l~~~~~p~~i~~~~~  476 (502)
T PRK08276        398 GGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAG-DALAAELIAWLRGRLAHYKCPRSIDFEDE  476 (502)
T ss_pred             CCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCC-hhhHHHHHHHHHhhccCCCCCcEEEEecC
Confidence            99999999999999999999999999999888888999999987764311 12345899999999999999999999999


Q ss_pred             CCCCCCCcccHHHHHHHhh
Q 048729          309 LPKTSTGKIQKYLLREFAK  327 (330)
Q Consensus       309 lP~t~~GKv~r~~l~~~~~  327 (330)
                      +|+|++||++|++|++.+.
T Consensus       477 lP~t~~GKi~r~~L~~~~~  495 (502)
T PRK08276        477 LPRTPTGKLYKRRLRDRYW  495 (502)
T ss_pred             CCCCcccchhHHHHHHHHH
Confidence            9999999999999999874

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-40  Score=318.03  Aligned_cols=308  Identities=24%  Similarity=0.360  Sum_probs=239.9

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCC---------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHh
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNN---------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGV   85 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~---------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~   85 (330)
                      +++.+.|.+.+..+|+++|+++.+         +++||+||..++.++|++|.+.| .+||+|+++++|++++++++|||
T Consensus         1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~   79 (578)
T PRK05850          1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA   79 (578)
T ss_pred             CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence            468899999999999999998632         68999999999999999999999 68999999999999999999999


Q ss_pred             hhcCcEEeecCC---CCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc-----------------------c----Cc-
Q 048729           86 PMSGAILNNINT---RLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS-----------------------L----FP-  134 (330)
Q Consensus        86 ~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-----------------------~----~~-  134 (330)
                      +++|++++|+++   .++.+++.++++..+++++++++.....+.....                       .    .. 
T Consensus        80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (578)
T PRK05850         80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLDLDSPRGSDARPRDL  159 (578)
T ss_pred             HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeecccccccCCccccCCCCC
Confidence            999999999986   4567899999999999999987654332211000                       0    00 


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       160 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~  239 (578)
T PRK05850        160 PSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLT  239 (578)
T ss_pred             CCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEe
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------hHHHH---hhccC---
Q 048729          135 ----------------------------------------------------------------QRARL---KARQG---  144 (330)
Q Consensus       135 ----------------------------------------------------------------~~~~~---~~~~G---  144 (330)
                                                                                      ....+   ....|   
T Consensus       240 ~~~~~~~~p~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~  319 (578)
T PRK05850        240 SPVAFLQRPARWMQLLASNPHAFSAAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRE  319 (578)
T ss_pred             CHHHHHHCHHHHHHHHHHcCCeEEeCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCc
Confidence                                                                            00000   00001   


Q ss_pred             ---CcccCcee--------------------------------------------------EEEeCCCCCcccCCCCcee
Q 048729          145 ---VKTVGLAE--------------------------------------------------VDVVNPETGESVKRDGVSL  171 (330)
Q Consensus       145 ---~~~~g~te--------------------------------------------------~~i~d~~~g~~~~~~~~~~  171 (330)
                         .+.||.||                                                  ++++|++++.+++.+  +.
T Consensus       320 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~~~~~~ivd~~~~~~~~~g--~~  397 (578)
T PRK05850        320 TAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPRSPTVRIVDPDTCIECPAG--TV  397 (578)
T ss_pred             ccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCCCCEEEEEcCCCCcCCCCC--CE
Confidence               12255554                                                  345565467778777  88


Q ss_pred             cEEEEecCcccccccCCchhhhcccc-----------CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHH
Q 048729          172 GEVVLRGGCVTVGYFKDKEATRRCIS-----------DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVES  240 (330)
Q Consensus       172 Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~  240 (330)
                      |||+++|++++.||+++++.+.+.|.           .+|||+|||+|+++ +|+++++||.+|+||++|++|+|.+||+
T Consensus       398 Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~  476 (578)
T PRK05850        398 GEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEA  476 (578)
T ss_pred             EEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHH
Confidence            99999999999999999999988773           25799999999998 9999999999999999999999999999


Q ss_pred             HHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCC--CCHHHHHHHHHhcCCCC--CCCceEEEcc--CCCCCCC
Q 048729          241 VLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKK--PTEKEIIEYCRARLPRY--MVPRKVVFSE--ELPKTST  314 (330)
Q Consensus       241 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~l~~~l~~~l~~~--~~p~~~~~v~--~lP~t~~  314 (330)
                      +|.+||.+ ++++++.++. .++.++++++++++......  ....++++.+...+..+  ..|..+++++  +||+|++
T Consensus       477 ~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~  554 (578)
T PRK05850        477 TIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTS  554 (578)
T ss_pred             HHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCCCceEEEEeCCCCcCCCCC
Confidence            99999985 4778888776 67789999988876432110  02345666665544432  3566666665  8999999


Q ss_pred             CcccHHHHHHHhhh
Q 048729          315 GKIQKYLLREFAKS  328 (330)
Q Consensus       315 GKv~r~~l~~~~~~  328 (330)
                      ||++|++|++.+.+
T Consensus       555 GKi~R~~l~~~~~~  568 (578)
T PRK05850        555 GKIRRAACVEQYRQ  568 (578)
T ss_pred             chHHHHHHHHHHHc
Confidence            99999999999865

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=5.5e-40  Score=310.16  Aligned_cols=288  Identities=26%  Similarity=0.405  Sum_probs=246.5

Q ss_pred             cEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhc
Q 048729           32 PSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHS  111 (330)
Q Consensus        32 ~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~  111 (330)
                      .|+++.++.+||.||.+.++++|++|.+.|+++||+|+++++|++++++.++|++++|++++++++.++.+++.++++..
T Consensus         3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~   82 (509)
T PRK12406          3 ATIISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS   82 (509)
T ss_pred             eEEEECCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEcccchHHHHHHh--------------------------------------------------ccCc-------
Q 048729          112 ESKLVFVDHLHTYLLLEAL--------------------------------------------------SLFP-------  134 (330)
Q Consensus       112 ~~~~i~~~~~~~~~~~~~~--------------------------------------------------~~~~-------  134 (330)
                      ++++++++......+....                                                  ....       
T Consensus        83 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG  162 (509)
T PRK12406         83 GARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTSG  162 (509)
T ss_pred             CCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCccCCCCCCCceEEEECCC
Confidence            9999987653332211000                                                  0000       


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~  242 (509)
T PRK12406        163 TTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLIERH  242 (509)
T ss_pred             CCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHHHHHc
Confidence                                                                                            


Q ss_pred             --------------------------------------------hHH-------------------------------HH
Q 048729          135 --------------------------------------------QRA-------------------------------RL  139 (330)
Q Consensus       135 --------------------------------------------~~~-------------------------------~~  139 (330)
                                                                  ...                               ..
T Consensus       243 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~  322 (509)
T PRK12406        243 RITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSH  322 (509)
T ss_pred             CCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCccccccc
Confidence                                                        000                               00


Q ss_pred             hhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccc-cccCCchhhhccccCCCeEEeCceEEEecCceEEE
Q 048729          140 KARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTV-GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEI  218 (330)
Q Consensus       140 ~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~-gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~  218 (330)
                      +.++|.+++|. +++++|+ ++++++.+  +.|||+++|++++. ||+++++.+...+. +|||+|||++++|++|.+++
T Consensus       323 ~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~~~y~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~~~~  397 (509)
T PRK12406        323 PGTVGKAAPGA-ELRFVDE-DGRPLPQG--EIGEIYSRIAGNPDFTYHNKPEKRAEIDR-GGFITSGDVGYLDADGYLFL  397 (509)
T ss_pred             CCCcCccCCCc-EEEEECC-CCCCCCCC--CceEEEEECCccccccccCCchhcccccC-CCCeEEccEEEEcCCceEEE
Confidence            12446666664 7788887 78888887  88999999998765 89999887776655 89999999999999999999


Q ss_pred             EecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCC
Q 048729          219 KDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYM  298 (330)
Q Consensus       219 ~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~  298 (330)
                      .||.||++|++|.+|++.+||+.|.++|+|.++++++..+...++.+.+++++.++..    .+.+++++.++++++++.
T Consensus       398 ~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~l~~~l~~~~  473 (509)
T PRK12406        398 CDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGAT----LDEADIRAQLKARLAGYK  473 (509)
T ss_pred             eecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCC----CCHHHHHHHHHHhcccCC
Confidence            9999999999999999999999999999999999999988877788888888876543    577999999999999999


Q ss_pred             CCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          299 VPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       299 ~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +|..+++++++|+|++||++|++|++.+..
T Consensus       474 ~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~  503 (509)
T PRK12406        474 VPKHIEIMAELPREDSGKIFKRRLRDPYWA  503 (509)
T ss_pred             CCcEEEEeccCCCCCccchhHHHHHHHHHh
Confidence            999999999999999999999999998754

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3.3e-40  Score=319.77  Aligned_cols=312  Identities=21%  Similarity=0.305  Sum_probs=239.0

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeC-------C--eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYN-------N--TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQF   83 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~-------~--~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~l   83 (330)
                      ...|+.++|.+.++.+|+++|+...       +  +.+||+||.++++++|++|.+.|+++||+|+++++|+++|++++|
T Consensus        41 ~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l  120 (660)
T PLN02861         41 DIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAME  120 (660)
T ss_pred             CCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3458999999999999999999641       1  479999999999999999999999999999999999999999999


Q ss_pred             HhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH-----------------------------------
Q 048729           84 GVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE-----------------------------------  128 (330)
Q Consensus        84 a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~-----------------------------------  128 (330)
                      ||+++|++++|+++.++.+++.++++..++++++++......+..                                   
T Consensus       121 A~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  200 (660)
T PLN02861        121 ACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFS  200 (660)
T ss_pred             HHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEE
Confidence            999999999999999999999999999999999985432211100                                   


Q ss_pred             ------Hhc---cC----c-------------------------------------------------------------
Q 048729          129 ------ALS---LF----P-------------------------------------------------------------  134 (330)
Q Consensus       129 ------~~~---~~----~-------------------------------------------------------------  134 (330)
                            ...   ..    +                                                             
T Consensus       201 ~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~  280 (660)
T PLN02861        201 WEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYD  280 (660)
T ss_pred             HHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHH
Confidence                  000   00    0                                                             


Q ss_pred             ---------------------------------------------hHH--------------------------------
Q 048729          135 ---------------------------------------------QRA--------------------------------  137 (330)
Q Consensus       135 ---------------------------------------------~~~--------------------------------  137 (330)
                                                                   ...                                
T Consensus       281 ~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~  360 (660)
T PLN02861        281 QVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGL  360 (660)
T ss_pred             HHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCC
Confidence                                                         000                                


Q ss_pred             -------HH-----------h-hc---------------------cC----CcccCceeEEE---eC-C-------CCCc
Q 048729          138 -------RL-----------K-AR---------------------QG----VKTVGLAEVDV---VN-P-------ETGE  162 (330)
Q Consensus       138 -------~~-----------~-~~---------------------~G----~~~~g~te~~i---~d-~-------~~g~  162 (330)
                             ..           . .+                     .|    ...||.||+..   .. .       .-|.
T Consensus       361 ~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~  440 (660)
T PLN02861        361 KQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGV  440 (660)
T ss_pred             CCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHcCCCeeEecchhhhhhceeecccccCCCCCCccC
Confidence                   00           0 00                     02    12377777521   10 0       0122


Q ss_pred             ccCC----------------CCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeE
Q 048729          163 SVKR----------------DGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVI  226 (330)
Q Consensus       163 ~~~~----------------~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~i  226 (330)
                      +++.                .....|||+++|++++.|||++|+.+.+.|. +|||+|||+|++|+||+++|.||++|+|
T Consensus       441 p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~-dGw~~TGDlg~~d~dG~l~i~GR~kd~I  519 (660)
T PLN02861        441 PMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLI-DGWFHTGDIGEWQPNGAMKIIDRKKNIF  519 (660)
T ss_pred             ccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhh-ccCcccCceEEECCCCcEEEEeccccce
Confidence            2220                0014699999999999999999999999886 8999999999999999999999999999


Q ss_pred             Ee-CCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcc-----cC-CCC----------CHHHHHHH
Q 048729          227 IS-GGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLE-----LT-KKP----------TEKEIIEY  289 (330)
Q Consensus       227 k~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----~~-~~~----------~~~~l~~~  289 (330)
                      |. +|++|+|.+||+.+.+||.|.+++|++.+.   ++.++|+|++....-     .. ...          ....+.+.
T Consensus       520 k~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (660)
T PLN02861        520 KLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDE  596 (660)
T ss_pred             EcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHH
Confidence            95 799999999999999999999999999763   357888888763310     00 000          11234444


Q ss_pred             HHh-----cCCCCCCCceEEEcc-CC-----CCCCCCcccHHHHHHHhhh
Q 048729          290 CRA-----RLPRYMVPRKVVFSE-EL-----PKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       290 l~~-----~l~~~~~p~~~~~v~-~l-----P~t~~GKv~r~~l~~~~~~  328 (330)
                      +++     .++.++.+..|.+.+ .|     .+|+++|++|+.+++.|++
T Consensus       597 ~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~  646 (660)
T PLN02861        597 LNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKD  646 (660)
T ss_pred             HHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHH
Confidence            443     488999999988865 46     7999999999999998865

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.7e-40  Score=314.53  Aligned_cols=303  Identities=23%  Similarity=0.330  Sum_probs=243.7

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCC---eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNN---TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~---~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      .++.++|...++.+|+.+++...+   +.+||+||...+.++|++|.+.|+++||+|+++++|++++++.++||+++|++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  100 (579)
T PRK09192         21 PTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLV  100 (579)
T ss_pred             hhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCe
Confidence            489999999999998777654332   67999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCC-------HHHHHHHHHhcCCcEEEEcccchHHHHHHhc---------------------cCc---------
Q 048729           92 LNNINTRLD-------AHTLSVLLQHSESKLVFVDHLHTYLLLEALS---------------------LFP---------  134 (330)
Q Consensus        92 ~~~l~~~~~-------~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~---------------------~~~---------  134 (330)
                      ++|+++.+.       .+++.++++..++++++++......+.....                     ...         
T Consensus       101 ~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  180 (579)
T PRK09192        101 PVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVLSHAWFKALPEADVALPRPTPDDIAY  180 (579)
T ss_pred             eEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccceeehhhhcccCCCccccCCCCCCCeEE
Confidence            999976433       5789999999999999987655433322110                     000         


Q ss_pred             ----------------------------------------------------------------------h--H------
Q 048729          135 ----------------------------------------------------------------------Q--R------  136 (330)
Q Consensus       135 ----------------------------------------------------------------------~--~------  136 (330)
                                                                                            .  .      
T Consensus       181 i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~  260 (579)
T PRK09192        181 LQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPL  260 (579)
T ss_pred             EEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHH
Confidence                                                                                  0  0      


Q ss_pred             ------------------------H-----------------------------------HHh-----------------
Q 048729          137 ------------------------A-----------------------------------RLK-----------------  140 (330)
Q Consensus       137 ------------------------~-----------------------------------~~~-----------------  140 (330)
                                              .                                   ...                 
T Consensus       261 ~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~T  340 (579)
T PRK09192        261 QWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLA  340 (579)
T ss_pred             HHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccc
Confidence                                    0                                   000                 


Q ss_pred             --------------------------------------------hccCCcccCceeEEEeCCCCCcccCCCCceecEEEE
Q 048729          141 --------------------------------------------ARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVL  176 (330)
Q Consensus       141 --------------------------------------------~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v  176 (330)
                                                                  .++|.+++|. +++|+|+ ++..++.+  +.|||++
T Consensus       341 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~-~v~i~d~-~~~~~~~g--~~Gel~i  416 (579)
T PRK09192        341 EATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGH-EIEIRNE-AGMPLPER--VVGHICV  416 (579)
T ss_pred             cceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCc-EEEEECC-CCCCCCCC--CEEEEEe
Confidence                                                        0123333343 4555565 66777766  7899999


Q ss_pred             ecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcc--eEEEE
Q 048729          177 RGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVN--EAAVV  254 (330)
Q Consensus       177 ~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~--~~~v~  254 (330)
                      +|++++.||+++ +.+...+..+|||+|||++++ ++|+++++||.||+||++|++|+|.+||+.|.+||+|.  +++++
T Consensus       417 ~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~  494 (579)
T PRK09192        417 RGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAF  494 (579)
T ss_pred             cCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEE
Confidence            999999999999 556666666899999999999 89999999999999999999999999999999999998  89999


Q ss_pred             eecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCC-CCCCCceEEEcc--CCCCCCCCcccHHHHHHHhhh
Q 048729          255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLP-RYMVPRKVVFSE--ELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       255 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~p~~~~~v~--~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +..++. ++.+.++++...+..    .+.+++.+.+++.+. .+..|..+.+++  +||+|++||++|++|++++.+
T Consensus       495 ~~~~~~-~~~~~~~v~~~~~~~----~~~~~l~~~~~~~l~~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~  566 (579)
T PRK09192        495 SIAQEN-GEKIVLLVQCRISDE----ERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLS  566 (579)
T ss_pred             EeccCC-CeeEEEEEEecCCCh----HHHHHHHHHHHHHHHHHhCCCceEEEeCCCCcCCCCCcchhHHHHHHHHHc
Confidence            988875 447777777665433    456888999988874 578888888775  899999999999999998864

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=3.5e-40  Score=306.32  Aligned_cols=278  Identities=19%  Similarity=0.302  Sum_probs=226.0

Q ss_pred             eecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           40 TYTWSETHRRCLQVASSLSSVGI-QRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        40 ~~T~~el~~~~~~~a~~L~~~g~-~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      -|.|+||.+++.++|++|.+.|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++..+++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~   98 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG   98 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence            47899999999999999999988 57999999999999999999999999999999999999999999999999999998


Q ss_pred             cccchHH------HHH-H--hccCc-------------------------------------------------------
Q 048729          119 DHLHTYL------LLE-A--LSLFP-------------------------------------------------------  134 (330)
Q Consensus       119 ~~~~~~~------~~~-~--~~~~~-------------------------------------------------------  134 (330)
                      +......      ... .  .....                                                       
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~h~~g~~~~  178 (452)
T PRK07445         99 LDQLKLSHPPPLPSQGILPNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQVNSFCVLPLYHVSGLMQF  178 (452)
T ss_pred             cCccccccCCCCCccccCCCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHHhcCCCCceEeccCchhhhhHHHH
Confidence            6532110      000 0  00000                                                       


Q ss_pred             ------------------------------------------------------------------hHHHHhhccCC---
Q 048729          135 ------------------------------------------------------------------QRARLKARQGV---  145 (330)
Q Consensus       135 ------------------------------------------------------------------~~~~~~~~~G~---  145 (330)
                                                                                        ...+.....|.   
T Consensus       179 ~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~~~~l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~  258 (452)
T PRK07445        179 MRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLRPQWLAQFRTILLGGAPAWPSLLEQARQLQLRLA  258 (452)
T ss_pred             HHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhhChhhhhcceEEEECCccCCHHHHHHHHhcCCeEe
Confidence                                                                              00000001122   


Q ss_pred             cccCceeEEE--e--CC--------CCCcccCCCC-----ceecEEEEecCcccccccCCchhhhccccCCCeEEeCceE
Q 048729          146 KTVGLAEVDV--V--NP--------ETGESVKRDG-----VSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIG  208 (330)
Q Consensus       146 ~~~g~te~~i--~--d~--------~~g~~~~~~~-----~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~  208 (330)
                      ..||.||+..  .  .+        ..|++++.-.     ++.|||+++|++++.||++++.      ..+|||+|||++
T Consensus       259 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~  332 (452)
T PRK07445        259 PTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPANQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLG  332 (452)
T ss_pred             cCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcCCCcceEEEeCCccchhhcCCcc------CCCCEEECCCEE
Confidence            3488888631  1  11        1244444310     1679999999999999997543      237999999999


Q ss_pred             EEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHH
Q 048729          209 VMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIE  288 (330)
Q Consensus       209 ~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~  288 (330)
                      ++|+||++++.||.||+||++|++|+|.+||+.+.+||+|.+++|++.+++..++.++++++..++.     .+.+++++
T Consensus       333 ~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~-----~~~~~l~~  407 (452)
T PRK07445        333 YLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPS-----ISLEELKT  407 (452)
T ss_pred             EEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCC-----CCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988888999998876552     46789999


Q ss_pred             HHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          289 YCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       289 ~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .++++|+.|++|+.++++++||+|++||++|++|++++.+
T Consensus       408 ~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  447 (452)
T PRK07445        408 AIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQ  447 (452)
T ss_pred             HHHHhCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.6e-39  Score=316.39  Aligned_cols=312  Identities=27%  Similarity=0.367  Sum_probs=236.0

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeC------------C-----------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYN------------N-----------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSV   70 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~------------~-----------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~   70 (330)
                      ..|+.++|.+.++.+||++|+...            +           ..+||+|+.++++++|++|.+.|+++||+|++
T Consensus        57 ~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai  136 (696)
T PLN02387         57 ATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAI  136 (696)
T ss_pred             CCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            358999999999999999999531            1           23899999999999999999999999999999


Q ss_pred             ECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh--------------------
Q 048729           71 VAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL--------------------  130 (330)
Q Consensus        71 ~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~--------------------  130 (330)
                      +++|+++|++++|||+++|++++|+++.++++++.++++..++++++++......+....                    
T Consensus       137 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (696)
T PLN02387        137 FADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSD  216 (696)
T ss_pred             EcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhh
Confidence            999999999999999999999999999999999999999999999998764433221100                    


Q ss_pred             ---------------------cc--------Cc-----------------------------------------------
Q 048729          131 ---------------------SL--------FP-----------------------------------------------  134 (330)
Q Consensus       131 ---------------------~~--------~~-----------------------------------------------  134 (330)
                                           ..        .+                                               
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l  296 (696)
T PLN02387        217 SSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYL  296 (696)
T ss_pred             hhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEE
Confidence                                 00        00                                               


Q ss_pred             ------------------------------------------------------------------hH--HH--------
Q 048729          135 ------------------------------------------------------------------QR--AR--------  138 (330)
Q Consensus       135 ------------------------------------------------------------------~~--~~--------  138 (330)
                                                                                        ..  ..        
T Consensus       297 ~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~  376 (696)
T PLN02387        297 AYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLA  376 (696)
T ss_pred             EECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHH
Confidence                                                                              00  00        


Q ss_pred             --------------------------------------------------------------H-hhccCCc---ccCcee
Q 048729          139 --------------------------------------------------------------L-KARQGVK---TVGLAE  152 (330)
Q Consensus       139 --------------------------------------------------------------~-~~~~G~~---~~g~te  152 (330)
                                                                                    + ....|.+   .||.||
T Consensus       377 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TE  456 (696)
T PLN02387        377 KKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTE  456 (696)
T ss_pred             HHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhh
Confidence                                                                          0 0011222   266666


Q ss_pred             E--------------------------EEeC-CCCCcccCCCCceecEEEEecCcccccccCCchhhhcccc--CCC--e
Q 048729          153 V--------------------------DVVN-PETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS--DNG--W  201 (330)
Q Consensus       153 ~--------------------------~i~d-~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~g--~  201 (330)
                      +                          +|+| ++.+..+.......|||+++|++++.|||++|+.+.+.|.  ++|  |
T Consensus       457 t~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W  536 (696)
T PLN02387        457 TCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRW  536 (696)
T ss_pred             cccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCce
Confidence            4                          3333 1111111111113599999999999999999999998873  345  9


Q ss_pred             EEeCceEEEecCceEEEEecCCCeEEe-CCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcc----
Q 048729          202 FYTGDIGVMHADGYVEIKDRSKDVIIS-GGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLE----  276 (330)
Q Consensus       202 ~~TGD~~~~~~~G~l~~~GR~dd~ik~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----  276 (330)
                      |+|||+|++|+||++++.||.+|+||. +|++|+|.+||++|.+||.|.+++|++.+..   ..++++|++....-    
T Consensus       537 ~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv~~~~~~~~~~  613 (696)
T PLN02387        537 FYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH---SYCVALVVPSQQALEKWA  613 (696)
T ss_pred             eecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEEeCHHHHHHHH
Confidence            999999999999999999999999996 6999999999999999999999999987632   25678887754310    


Q ss_pred             ------cCC-------CCCHHHHHHHH-----HhcCCCCCCCceEEEccCCC------CCCCCcccHHHHHHHhhh
Q 048729          277 ------LTK-------KPTEKEIIEYC-----RARLPRYMVPRKVVFSEELP------KTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       277 ------~~~-------~~~~~~l~~~l-----~~~l~~~~~p~~~~~v~~lP------~t~~GKv~r~~l~~~~~~  328 (330)
                            ...       ....+++.+.+     +.+|+.+++|..|.++++-.      .|+++|++|+.+++.|++
T Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~  689 (696)
T PLN02387        614 KKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKD  689 (696)
T ss_pred             HHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHH
Confidence                  000       00112222333     34699999999999887533      688899999999999975

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=2.1e-39  Score=332.55  Aligned_cols=308  Identities=22%  Similarity=0.271  Sum_probs=242.2

Q ss_pred             CCCCHHHHHHHHHHhcC-CCcEEEe-CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc
Q 048729           13 TPLTTLGFLERAAAAYT-DCPSLVY-NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA   90 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p-~~~a~~~-~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~   90 (330)
                      ...++.+++.+.++++| +++++.+ .++++||+||.++++++|++|.+ |+++||+|+++++|++++++.++||+++|+
T Consensus       629 ~~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~  707 (1140)
T PRK06814        629 YDRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGR  707 (1140)
T ss_pred             ccCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCC
Confidence            35678899999999986 5677666 46899999999999999999975 999999999999999999999999999999


Q ss_pred             EEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHH---------------------H----------H----H-hc---
Q 048729           91 ILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLL---------------------L----------E----A-LS---  131 (330)
Q Consensus        91 ~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~---------------------~----------~----~-~~---  131 (330)
                      +++++++..+.+++.+++++.+++++++++......                     .          .    . ..   
T Consensus       708 v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1140)
T PRK06814        708 VPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFPLVYF  787 (1140)
T ss_pred             EEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHHHHHHhhccCCcccc
Confidence            999999999999999999999999999875332110                     0          0    0 00   


Q ss_pred             --cCc---------------------------------------------------------------------------
Q 048729          132 --LFP---------------------------------------------------------------------------  134 (330)
Q Consensus       132 --~~~---------------------------------------------------------------------------  134 (330)
                        ..+                                                                           
T Consensus       788 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~  867 (1140)
T PRK06814        788 CNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYP  867 (1140)
T ss_pred             CCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEec
Confidence              000                                                                           


Q ss_pred             -------------------------------------------------------hHHHHhhccCC---cccCceeEEEe
Q 048729          135 -------------------------------------------------------QRARLKARQGV---KTVGLAEVDVV  156 (330)
Q Consensus       135 -------------------------------------------------------~~~~~~~~~G~---~~~g~te~~i~  156 (330)
                                                                             .........|.   +.||.||+...
T Consensus       868 ~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~  947 (1140)
T PRK06814        868 SPLHYRIIPELIYDTNATILFGTDTFLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPV  947 (1140)
T ss_pred             CcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcccccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccce
Confidence                                                                   00001111122   34777775321


Q ss_pred             ---C-C------CCCcccCC--------C-CceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEE
Q 048729          157 ---N-P------ETGESVKR--------D-GVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVE  217 (330)
Q Consensus       157 ---d-~------~~g~~~~~--------~-~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~  217 (330)
                         + +      .-|++.+.        . .++.|||+++|++++.||+++++........+|||+|||++++|+||+++
T Consensus       948 ~~~~~~~~~~~~~vG~p~~g~~~~~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~ 1027 (1140)
T PRK06814        948 IALNTPMHNKAGTVGRLLPGIEYRLEPVPGIDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFIT 1027 (1140)
T ss_pred             EEecCCCCCCCCcCCccCCCCeEEEeecCCCCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEE
Confidence               1 0      01222221        0 01569999999999999998765332222238999999999999999999


Q ss_pred             EEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhc-CCC
Q 048729          218 IKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR-LPR  296 (330)
Q Consensus       218 ~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~-l~~  296 (330)
                      +.||.||++|++|++|+|.+||+.+.+++++.+++|++.+++..++++++++.   +..    .+.+++.+.++++ +++
T Consensus      1028 ~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~----~~~~~l~~~~~~~~l~~ 1100 (1140)
T PRK06814       1028 IKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASD----ATRAAFLAHAKAAGASE 1100 (1140)
T ss_pred             EEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCC----cCHHHHHHHHHHcCCCc
Confidence            99999999999999999999999999999999999999998887888776654   112    4678899999874 999


Q ss_pred             CCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          297 YMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       297 ~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +++|..+++++++|+|++||+||++|++++++
T Consensus      1101 ~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 1132 (1140)
T PRK06814       1101 LMVPAEIITIDEIPLLGTGKIDYVAVTKLAEE 1132 (1140)
T ss_pred             ccCCcEEEEecCcCCCCCCCCcHHHHHHHHHH
Confidence            99999999999999999999999999998865

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.7e-39  Score=312.95  Aligned_cols=315  Identities=18%  Similarity=0.187  Sum_probs=242.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCcEEEeC-----CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 048729            8 NSANSTPLTTLGFLERAAAAYTDCPSLVYN-----NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQ   82 (330)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~p~~~a~~~~-----~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~   82 (330)
                      .+....+.|+.++|.+.++.+|+++|+++.     .+++||+||.+.++++|++|.+.|+++||+|+++++|++++++.+
T Consensus        32 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~  111 (614)
T PRK08180         32 EPLGDYPRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLA  111 (614)
T ss_pred             CCCCCcCccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence            334455779999999999999999999874     268999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCcEEeecCCCCC-----HHHHHHHHHhcCCcEEEEcccc--hHHH-------------------------HHHh
Q 048729           83 FGVPMSGAILNNINTRLD-----AHTLSVLLQHSESKLVFVDHLH--TYLL-------------------------LEAL  130 (330)
Q Consensus        83 la~~~~G~~~~~l~~~~~-----~~~l~~~l~~~~~~~i~~~~~~--~~~~-------------------------~~~~  130 (330)
                      |||+++|++++|+++.++     .+++.++++..++++++++...  ...+                         ....
T Consensus       112 lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (614)
T PRK08180        112 LAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAATPFAALL  191 (614)
T ss_pred             HHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCCCCCcccccHHHHh
Confidence            999999999999999888     7899999999999999986420  0000                         0000


Q ss_pred             c------------cC-c---------------------------------------------------------------
Q 048729          131 S------------LF-P---------------------------------------------------------------  134 (330)
Q Consensus       131 ~------------~~-~---------------------------------------------------------------  134 (330)
                      .            .. .                                                               
T Consensus       192 ~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~  271 (614)
T PRK08180        192 ATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNL  271 (614)
T ss_pred             ccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHH
Confidence            0            00 0                                                               


Q ss_pred             ----------------------------------------------hH--------------------------------
Q 048729          135 ----------------------------------------------QR--------------------------------  136 (330)
Q Consensus       135 ----------------------------------------------~~--------------------------------  136 (330)
                                                                    ..                                
T Consensus       272 ~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~  351 (614)
T PRK08180        272 GIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVW  351 (614)
T ss_pred             HHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHH
Confidence                                                          00                                


Q ss_pred             HHHhh----ccC-----CcccCceeEEEe----CC------CCCcccC--------CCCceecEEEEecCcccccccCCc
Q 048729          137 ARLKA----RQG-----VKTVGLAEVDVV----NP------ETGESVK--------RDGVSLGEVVLRGGCVTVGYFKDK  189 (330)
Q Consensus       137 ~~~~~----~~G-----~~~~g~te~~i~----d~------~~g~~~~--------~~~~~~Gel~v~~~~~~~gy~~~~  189 (330)
                      ..+..    ..|     ...||.||+..+    +.      .-|.+++        .+  ..|||+++|++++.|||++|
T Consensus       352 ~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~~--~~GEi~vrg~~v~~GY~~~p  429 (614)
T PRK08180        352 DRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPVG--GKLEVRVKGPNVTPGYWRAP  429 (614)
T ss_pred             HHHHHHHHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEecCC--CCcEEEEecCccchhhcCCh
Confidence            00000    012     134888886411    10      0133222        23  45899999999999999999


Q ss_pred             hhhhccccCCCeEEeCceEEE----ecCceEEEEecCCCeEE-eCCeecC--HHHHHHHHhcCcCcceEEEEeecCCCCC
Q 048729          190 EATRRCISDNGWFYTGDIGVM----HADGYVEIKDRSKDVII-SGGENIC--SAEVESVLYSITAVNEAAVVARPDMFWG  262 (330)
Q Consensus       190 ~~~~~~~~~~g~~~TGD~~~~----~~~G~l~~~GR~dd~ik-~~G~~v~--~~~iE~~l~~~~~v~~~~v~~~~~~~~~  262 (330)
                      +.+.+.|..+|||+|||+|++    |++|+++|+||.+|++| .+|++++  +.++|..+.+||.|.+++|++.+++   
T Consensus       430 ~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~---  506 (614)
T PRK08180        430 ELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD---  506 (614)
T ss_pred             hHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC---
Confidence            999988877899999999999    46899999999999888 6798777  7788889899999999999998875   


Q ss_pred             ceeEEEEEecCCccc-----------CCCCCHHHHHHHHHhcCCCCC--------CCceEEEccCCCCC------CCCcc
Q 048729          263 EIPCAFVSLKRDLEL-----------TKKPTEKEIIEYCRARLPRYM--------VPRKVVFSEELPKT------STGKI  317 (330)
Q Consensus       263 ~~~~~~v~~~~~~~~-----------~~~~~~~~l~~~l~~~l~~~~--------~p~~~~~v~~lP~t------~~GKv  317 (330)
                       .+.++|++.++...           ....+.+++.+.+.++|..++        +|+++++++++|+|      ++||+
T Consensus       507 -~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~  585 (614)
T PRK08180        507 -EIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYI  585 (614)
T ss_pred             -ceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccCccccc
Confidence             46788887654200           000244678888877777666        89999999999876      46688


Q ss_pred             cHHHHHHHhhh
Q 048729          318 QKYLLREFAKS  328 (330)
Q Consensus       318 ~r~~l~~~~~~  328 (330)
                      +|+++++.|++
T Consensus       586 ~R~~~~~~y~~  596 (614)
T PRK08180        586 NQRAVLARRAA  596 (614)
T ss_pred             cHHHHHHHhHH
Confidence            99999998865

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-38  Score=311.18  Aligned_cols=309  Identities=22%  Similarity=0.313  Sum_probs=233.6

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeC---------------------------CeeecHHHHHHHHHHHHHHHHHcCCCCCC
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYN---------------------------NTTYTWSETHRRCLQVASSLSSVGIQRGH   66 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~---------------------------~~~~T~~el~~~~~~~a~~L~~~g~~~gd   66 (330)
                      ..|+.++|.++++.+||++|+.+.                           ++.+||+||.++++++|++|.+.|+++||
T Consensus        68 ~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd  147 (700)
T PTZ00216         68 GPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGS  147 (700)
T ss_pred             CCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            458999999999999999999973                           47899999999999999999999999999


Q ss_pred             EEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH------------------
Q 048729           67 VVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE------------------  128 (330)
Q Consensus        67 ~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~------------------  128 (330)
                      +|+++++|+++|++++|||+++|++++|+++.++++++.++++..++++++++......+..                  
T Consensus       148 ~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~  227 (700)
T PTZ00216        148 NVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSL  227 (700)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999986543221100                  


Q ss_pred             -------------------Hh-------cc----Cc--------------------------------------------
Q 048729          129 -------------------AL-------SL----FP--------------------------------------------  134 (330)
Q Consensus       129 -------------------~~-------~~----~~--------------------------------------------  134 (330)
                                         ..       ..    .+                                            
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~  307 (700)
T PTZ00216        228 PASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPP  307 (700)
T ss_pred             ccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCC
Confidence                               00       00    00                                            


Q ss_pred             ----------------------------------------hH-----------------------HHH------------
Q 048729          135 ----------------------------------------QR-----------------------ARL------------  139 (330)
Q Consensus       135 ----------------------------------------~~-----------------------~~~------------  139 (330)
                                                              ..                       ...            
T Consensus       308 ~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~  387 (700)
T PTZ00216        308 EEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVG  387 (700)
T ss_pred             CCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEECCHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccC
Confidence                                                    00                       000            


Q ss_pred             --------------------------------------h-h----------------------ccC--CcccCcee----
Q 048729          140 --------------------------------------K-A----------------------RQG--VKTVGLAE----  152 (330)
Q Consensus       140 --------------------------------------~-~----------------------~~G--~~~~g~te----  152 (330)
                                                            . .                      ..|  ...||.||    
T Consensus       388 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~~l~~~YG~TEt~~~  467 (700)
T PTZ00216        388 SLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFGMVIQGWGLTETVCC  467 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhhhHhhccCccccccc
Confidence                                                  0 0                      000  01245554    


Q ss_pred             ----------------------EEEeCCCCCc--ccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceE
Q 048729          153 ----------------------VDVVNPETGE--SVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIG  208 (330)
Q Consensus       153 ----------------------~~i~d~~~g~--~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~  208 (330)
                                            ++|+|. ++.  ..+++  ..|||+++|++++.|||++|+.+.+.|..+|||+|||+|
T Consensus       468 ~~~~~~~~~~~~svG~p~~g~evkI~d~-~~~~~~~~~~--~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig  544 (700)
T PTZ00216        468 GGIQRTGDLEPNAVGQLLKGVEMKLLDT-EEYKHTDTPE--PRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVG  544 (700)
T ss_pred             ccccCCCCCCCCCcCCcCCCeEEEEeec-hhhccCCCCC--CCceEEEcCCcccchhcCChhHhhhhccccCCeeccceE
Confidence                                  444443 211  11222  469999999999999999999999999879999999999


Q ss_pred             EEecCceEEEEecCCCeEE-eCCeecCHHHHHHHHhcCcCcceE--EEEeecCCCCCceeEEEEEecCCcc--------c
Q 048729          209 VMHADGYVEIKDRSKDVII-SGGENICSAEVESVLYSITAVNEA--AVVARPDMFWGEIPCAFVSLKRDLE--------L  277 (330)
Q Consensus       209 ~~~~~G~l~~~GR~dd~ik-~~G~~v~~~~iE~~l~~~~~v~~~--~v~~~~~~~~~~~~~~~v~~~~~~~--------~  277 (330)
                      ++|+||+++++||.||+|| .+|++|+|.+||+.+.++|.|.++  +|+..++   ...+++++++.....        .
T Consensus       545 ~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~---~~~l~a~vv~~~~~~~~~~~~~~~  621 (700)
T PTZ00216        545 SIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA---RSYICALVLTDEAKAMAFAKEHGI  621 (700)
T ss_pred             EEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC---CceEEEEEecCHHHHHHHHHHcCC
Confidence            9999999999999999999 999999999999999999999973  3443332   246778887643210        0


Q ss_pred             C----CCC----CHHHHHHHH-----HhcCCCCCCCceEEEcc------CCCCCCCCcccHHHHHHHhhh
Q 048729          278 T----KKP----TEKEIIEYC-----RARLPRYMVPRKVVFSE------ELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       278 ~----~~~----~~~~l~~~l-----~~~l~~~~~p~~~~~v~------~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .    ...    ..+.+.+.+     ++.+..++++..|.+++      .-..|+++|++|+.+++.|++
T Consensus       622 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~  691 (700)
T PTZ00216        622 EGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYAD  691 (700)
T ss_pred             CCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHH
Confidence            0    000    012222322     24688889999988875      344699999999999998865

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-38  Score=308.55  Aligned_cols=311  Identities=20%  Similarity=0.278  Sum_probs=237.0

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeC-----CeeecHHHHHHHHHHHHHHHHH---cCCCCC-----------CEEEEECC
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYN-----NTTYTWSETHRRCLQVASSLSS---VGIQRG-----------HVVSVVAP   73 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~-----~~~~T~~el~~~~~~~a~~L~~---~g~~~g-----------d~V~~~~~   73 (330)
                      ...|+.++|.+.++.+|+++|+.+.     ++.+||+|+.+++.++|++|.+   .|+++|           |+|+++++
T Consensus        59 ~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~  138 (746)
T PTZ00342         59 VYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGS  138 (746)
T ss_pred             ccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcC
Confidence            3669999999999999999999962     2689999999999999999997   499998           99999999


Q ss_pred             CCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH------------------------
Q 048729           74 NVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA------------------------  129 (330)
Q Consensus        74 ~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~------------------------  129 (330)
                      |+++|+++++||+++|++++|+++.++++++.++++.+++++++++......+...                        
T Consensus       139 N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~  218 (746)
T PTZ00342        139 NSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEINI  218 (746)
T ss_pred             CCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccc
Confidence            99999999999999999999999999999999999999999999864332211100                        


Q ss_pred             --------------------------------------------------------h-----------------------
Q 048729          130 --------------------------------------------------------L-----------------------  130 (330)
Q Consensus       130 --------------------------------------------------------~-----------------------  130 (330)
                                                                              .                       
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (746)
T PTZ00342        219 NKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKI  298 (746)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCCCC
Confidence                                                                    0                       


Q ss_pred             -ccCc---------------------------------------------------------------------------
Q 048729          131 -SLFP---------------------------------------------------------------------------  134 (330)
Q Consensus       131 -~~~~---------------------------------------------------------------------------  134 (330)
                       ...+                                                                           
T Consensus       299 ~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~  378 (746)
T PTZ00342        299 QNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIW  378 (746)
T ss_pred             CCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEe
Confidence             0000                                                                           


Q ss_pred             ------------------------------hH-----------HH-----------------------------------
Q 048729          135 ------------------------------QR-----------AR-----------------------------------  138 (330)
Q Consensus       135 ------------------------------~~-----------~~-----------------------------------  138 (330)
                                                    ..           .+                                   
T Consensus       379 ~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~  458 (746)
T PTZ00342        379 SKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDK  458 (746)
T ss_pred             CCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh
Confidence                                          00           00                                   


Q ss_pred             ----------------------HhhccCCc---ccCceeEEE---eC-C------CCCccc-----------------CC
Q 048729          139 ----------------------LKARQGVK---TVGLAEVDV---VN-P------ETGESV-----------------KR  166 (330)
Q Consensus       139 ----------------------~~~~~G~~---~~g~te~~i---~d-~------~~g~~~-----------------~~  166 (330)
                                            +....|.+   .||.||+.-   .. +      .-|.++                 +.
T Consensus       459 lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~  538 (746)
T PTZ00342        459 VNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATDT  538 (746)
T ss_pred             hCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCCC
Confidence                                  00012222   367777521   10 0      012332                 11


Q ss_pred             CCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEE-eCCeecCHHHHHHHHhcC
Q 048729          167 DGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVII-SGGENICSAEVESVLYSI  245 (330)
Q Consensus       167 ~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik-~~G~~v~~~~iE~~l~~~  245 (330)
                      .  ..|||+++|++++.|||++|+.+.+.|..||||+|||+|++|+||+++++||.+|+|| .+|++|+|.+||+.+.++
T Consensus       539 ~--~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~  616 (746)
T PTZ00342        539 L--PKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQI  616 (746)
T ss_pred             C--CceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcC
Confidence            1  3599999999999999999999999998899999999999999999999999999999 579999999999999999


Q ss_pred             cCcceEEEEeecCCCCCceeEEEEEecCCc----------------ccCC--------CCC----HHHHHHH---H--Hh
Q 048729          246 TAVNEAAVVARPDMFWGEIPCAFVSLKRDL----------------ELTK--------KPT----EKEIIEY---C--RA  292 (330)
Q Consensus       246 ~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------------~~~~--------~~~----~~~l~~~---l--~~  292 (330)
                      |.|.+++|++...   ...++|+|++....                ....        ...    .+.+.+.   +  +.
T Consensus       617 p~V~~~~VvG~~~---~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  693 (746)
T PTZ00342        617 SFINFCVVYGDDS---MDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKT  693 (746)
T ss_pred             CCccEEEEEccCC---ccccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHh
Confidence            9999999999643   22578888775410                0000        000    1111212   2  23


Q ss_pred             cCCCCCCCceEEEcc-CCC----CCCCCcccHHHHHHHhhh
Q 048729          293 RLPRYMVPRKVVFSE-ELP----KTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       293 ~l~~~~~p~~~~~v~-~lP----~t~~GKv~r~~l~~~~~~  328 (330)
                      .|+.++++..|.+++ .|.    .||+.|++|..+.+.|+.
T Consensus       694 ~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~  734 (746)
T PTZ00342        694 NLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAF  734 (746)
T ss_pred             CCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHH
Confidence            699999999988875 343    899999999999998863

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=7.9e-38  Score=302.79  Aligned_cols=312  Identities=22%  Similarity=0.309  Sum_probs=234.5

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeC----C-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYN----N-----TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQF   83 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~l   83 (330)
                      ...|+.++|.+.++.+|+++|+...    +     ..+||+|+.+.++++|++|.+.|+++||+|+++++|+++|++++|
T Consensus        40 ~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~l  119 (660)
T PLN02430         40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAME  119 (660)
T ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4569999999999999999999742    1     247999999999999999999999999999999999999999999


Q ss_pred             HhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH-HHH-----------------------------------
Q 048729           84 GVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY-LLL-----------------------------------  127 (330)
Q Consensus        84 a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~-~~~-----------------------------------  127 (330)
                      ||+++|++++|+++.++++++.++++..++++++++..... .+.                                   
T Consensus       120 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  199 (660)
T PLN02430        120 ACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYS  199 (660)
T ss_pred             HHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEE
Confidence            99999999999999999999999999999999998653211 000                                   


Q ss_pred             -----HHhc---c-----Cc------------------------------------------------------------
Q 048729          128 -----EALS---L-----FP------------------------------------------------------------  134 (330)
Q Consensus       128 -----~~~~---~-----~~------------------------------------------------------------  134 (330)
                           ....   .     .+                                                            
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~  279 (660)
T PLN02430        200 WIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHIL  279 (660)
T ss_pred             HHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHH
Confidence                 0000   0     00                                                            


Q ss_pred             ------------------------------------------------hH---------H--------------------
Q 048729          135 ------------------------------------------------QR---------A--------------------  137 (330)
Q Consensus       135 ------------------------------------------------~~---------~--------------------  137 (330)
                                                                      ..         .                    
T Consensus       280 ~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (660)
T PLN02430        280 DRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRG  359 (660)
T ss_pred             HHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcC
Confidence                                                            00         0                    


Q ss_pred             ----------H-------------------------------HhhccC-C---cccCceeEEE---eC-C-------CCC
Q 048729          138 ----------R-------------------------------LKARQG-V---KTVGLAEVDV---VN-P-------ETG  161 (330)
Q Consensus       138 ----------~-------------------------------~~~~~G-~---~~~g~te~~i---~d-~-------~~g  161 (330)
                                .                               +....| .   ..||.||+..   .. +       .-|
T Consensus       360 ~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG  439 (660)
T PLN02430        360 YSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVG  439 (660)
T ss_pred             CCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCcc
Confidence                      0                               000011 1   2267776321   00 0       011


Q ss_pred             cccC----------------CCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCe
Q 048729          162 ESVK----------------RDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDV  225 (330)
Q Consensus       162 ~~~~----------------~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~  225 (330)
                      .+++                .+.+..|||+++|++++.|||++|+.+...|. +|||+|||+|++|+||++++.||.+|+
T Consensus       440 ~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~-dGw~~TGDig~~d~dG~l~i~gR~kd~  518 (660)
T PLN02430        440 APAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMK-DGWFHTGDIGEILPNGVLKIIDRKKNL  518 (660)
T ss_pred             CCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhhh-ccceeccceEEECCCCcEEEEEccccc
Confidence            1111                01113599999999999999999999998886 999999999999999999999999999


Q ss_pred             EEe-CCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcc----------cC--CCCCHHHHH----H
Q 048729          226 IIS-GGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLE----------LT--KKPTEKEII----E  288 (330)
Q Consensus       226 ik~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------~~--~~~~~~~l~----~  288 (330)
                      ||. +|++|+|.+||+.+.++|.|.+++|++..   ....++|+|+++...-          ..  ......+++    +
T Consensus       519 ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  595 (660)
T PLN02430        519 IKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILS  595 (660)
T ss_pred             EEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHH
Confidence            995 79999999999999999999999999843   2457888888764310          00  000111122    2


Q ss_pred             HH-----HhcCCCCCCCceEEEccC------CCCCCCCcccHHHHHHHhhh
Q 048729          289 YC-----RARLPRYMVPRKVVFSEE------LPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       289 ~l-----~~~l~~~~~p~~~~~v~~------lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .+     +.+|+.++++..|.+.++      -..|+++|++|+.+.+.|++
T Consensus       596 ~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~  646 (660)
T PLN02430        596 ELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQV  646 (660)
T ss_pred             HHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHH
Confidence            22     235999999999888663      35899999999999998864

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=5.5e-38  Score=278.77  Aligned_cols=311  Identities=27%  Similarity=0.350  Sum_probs=263.4

Q ss_pred             CCCCCCHHHHHHHHHHhcCCCcEEEeCC--eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhc
Q 048729           11 NSTPLTTLGFLERAAAAYTDCPSLVYNN--TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMS   88 (330)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~p~~~a~~~~~--~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~   88 (330)
                      .....|+.++|.++++++|+++|+++.+  +++||+|+...++++|++|+..|++.||.|+++++|.++++..||++.++
T Consensus        73 rr~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKl  152 (649)
T KOG1179|consen   73 RRERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKL  152 (649)
T ss_pred             hccCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhh
Confidence            3457899999999999999999999977  79999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhccCc----------------------------------
Q 048729           89 GAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP----------------------------------  134 (330)
Q Consensus        89 G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~----------------------------------  134 (330)
                      |++...++.+...+.+.|-++.++++.+++++++...+.+......                                  
T Consensus       153 Gv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~~~l~~~~~~~vp  232 (649)
T KOG1179|consen  153 GVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLLAKLSAAPKHPVP  232 (649)
T ss_pred             CceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHHHhhcccccCCCC
Confidence            9999999999999999999999999999999998877766532221                                  


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       233 ~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~  312 (649)
T KOG1179|consen  233 VSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATV  312 (649)
T ss_pred             cccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceE
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------hHHHHhhccCCc----ccCcee
Q 048729          135 ----------------------------------------------------------QRARLKARQGVK----TVGLAE  152 (330)
Q Consensus       135 ----------------------------------------------------------~~~~~~~~~G~~----~~g~te  152 (330)
                                                                                .+..+....|.+    +||.||
T Consensus       313 VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNGLR~diW~~Fv~RFg~~~IgE~YgaTE  392 (649)
T KOG1179|consen  313 VLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNGLRPDIWQQFVKRFGIIKIGEFYGATE  392 (649)
T ss_pred             EEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCCCCchHHHHHHHHcCCCeEEEEecccc
Confidence                                                                      556666666655    488877


Q ss_pred             E---------------------------EE--eCCCCCcccCC--------CCceecEEEEe--cCc---ccccccCCch
Q 048729          153 V---------------------------DV--VNPETGESVKR--------DGVSLGEVVLR--GGC---VTVGYFKDKE  190 (330)
Q Consensus       153 ~---------------------------~i--~d~~~g~~~~~--------~~~~~Gel~v~--~~~---~~~gy~~~~~  190 (330)
                      -                           ++  +|+++|+++..        ..+|+|.++-+  -..   -+.||.+...
T Consensus       393 gn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~  472 (649)
T KOG1179|consen  393 GNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKK  472 (649)
T ss_pred             CcceeeeecCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchh
Confidence            2                           11  35556655543        23378866543  223   3889999777


Q ss_pred             hhhccc------cCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCce
Q 048729          191 ATRRCI------SDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEI  264 (330)
Q Consensus       191 ~~~~~~------~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~  264 (330)
                      .+++..      ..|-||.|||+..+|+.|++||.+|.+|.+.+.|++|+..|+|++|....++.|+.|+|+.-+....|
T Consensus       473 ~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGR  552 (649)
T KOG1179|consen  473 ATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGR  552 (649)
T ss_pred             hhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCc
Confidence            666544      23569999999999999999999999999999999999999999999999999999999988866555


Q ss_pred             e-EEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHH
Q 048729          265 P-CAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREF  325 (330)
Q Consensus       265 ~-~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~  325 (330)
                      . .|.|+..+...    .+.+.+-+.+++.||.|++|..+.+.+++++|.+=|..+..|.+.
T Consensus       553 aGMAaI~~~p~~~----~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~e  610 (649)
T KOG1179|consen  553 AGMAAIVLDPTTE----KDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKE  610 (649)
T ss_pred             cceEEEEecCccc----chHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHc
Confidence            4 45565566655    889999999999999999999999999999999999999998875

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-38  Score=304.03  Aligned_cols=314  Identities=18%  Similarity=0.201  Sum_probs=234.2

Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCcEEEeCC------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 048729            9 SANSTPLTTLGFLERAAAAYTDCPSLVYNN------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQ   82 (330)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~   82 (330)
                      +......++.++|.+.++.+||++|+++.+      +++||+||.+.++++|++|.+.|+++||+|+++++|++++++++
T Consensus        43 ~~~~~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~  122 (624)
T PRK12582         43 PLGPYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMT  122 (624)
T ss_pred             CCCCcccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence            334457789999999999999999998743      68999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCcEEeecCCCCCH-----HHHHHHHHhcCCcEEEEcccc-hH-----------------------------HHH
Q 048729           83 FGVPMSGAILNNINTRLDA-----HTLSVLLQHSESKLVFVDHLH-TY-----------------------------LLL  127 (330)
Q Consensus        83 la~~~~G~~~~~l~~~~~~-----~~l~~~l~~~~~~~i~~~~~~-~~-----------------------------~~~  127 (330)
                      |||+++|++++|+++.++.     +++.++++..++++++++... ..                             .+.
T Consensus       123 lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  202 (624)
T PRK12582        123 LAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFADLA  202 (624)
T ss_pred             HHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCCCcccccccHHHHh
Confidence            9999999999999998874     899999999999999886420 00                             000


Q ss_pred             HHh---------ccC-c---------------------------------------------------------------
Q 048729          128 EAL---------SLF-P---------------------------------------------------------------  134 (330)
Q Consensus       128 ~~~---------~~~-~---------------------------------------------------------------  134 (330)
                      ...         ... .                                                               
T Consensus       203 ~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~  282 (624)
T PRK12582        203 ATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNAN  282 (624)
T ss_pred             hcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHH
Confidence            000         000 0                                                               


Q ss_pred             -----------------------------------------------hHH------------------------------
Q 048729          135 -----------------------------------------------QRA------------------------------  137 (330)
Q Consensus       135 -----------------------------------------------~~~------------------------------  137 (330)
                                                                     ...                              
T Consensus       283 ~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~  362 (624)
T PRK12582        283 FNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDL  362 (624)
T ss_pred             HHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHH
Confidence                                                           000                              


Q ss_pred             -HHhhc-----cC-----CcccCceeEEEeC----C------CCCcccC--------CCCceecEEEEecCcccccccCC
Q 048729          138 -RLKAR-----QG-----VKTVGLAEVDVVN----P------ETGESVK--------RDGVSLGEVVLRGGCVTVGYFKD  188 (330)
Q Consensus       138 -~~~~~-----~G-----~~~~g~te~~i~d----~------~~g~~~~--------~~~~~~Gel~v~~~~~~~gy~~~  188 (330)
                       +....     .|     ...||+||+..+-    .      .-|++++        .+  +.|||+++|++++.|||++
T Consensus       363 ~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~~G--~~GEl~vrg~~v~~GY~~~  440 (624)
T PRK12582        363 YERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAPVG--DKYEVRVKGPNVTPGYHKD  440 (624)
T ss_pred             HHHHHHHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEccCC--CceEEEEECCcccccccCC
Confidence             00000     11     2348888864211    0      1233332        34  6799999999999999999


Q ss_pred             chhhhccccCCCeEEeCceEEE-e---cCceEEEEecCCCeEE-eCCeecCHHHHH--HHHhcCcCcceEEEEeecCCCC
Q 048729          189 KEATRRCISDNGWFYTGDIGVM-H---ADGYVEIKDRSKDVII-SGGENICSAEVE--SVLYSITAVNEAAVVARPDMFW  261 (330)
Q Consensus       189 ~~~~~~~~~~~g~~~TGD~~~~-~---~~G~l~~~GR~dd~ik-~~G~~v~~~~iE--~~l~~~~~v~~~~v~~~~~~~~  261 (330)
                      |+.+.+.|..+|||+|||+|++ |   ++|+++++||.+|++| .+|++|++.+||  .++.+||.|.+++|++.+++. 
T Consensus       441 p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~-  519 (624)
T PRK12582        441 PELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAF-  519 (624)
T ss_pred             ccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCc-
Confidence            9999988877999999999998 4   4699999999999999 579999999885  678899999999999987764 


Q ss_pred             CceeEEEEEecCCc------cc----CCCCCHHHHHHHHHhcC-------CCCC-CCceEEEccCCCC------CCCCcc
Q 048729          262 GEIPCAFVSLKRDL------EL----TKKPTEKEIIEYCRARL-------PRYM-VPRKVVFSEELPK------TSTGKI  317 (330)
Q Consensus       262 ~~~~~~~v~~~~~~------~~----~~~~~~~~l~~~l~~~l-------~~~~-~p~~~~~v~~lP~------t~~GKv  317 (330)
                         ..++|++....      ..    ......+++.+.++.++       +.+. +|.++.+++++|+      |++||+
T Consensus       520 ---~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~  596 (624)
T PRK12582        520 ---IGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYI  596 (624)
T ss_pred             ---EEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccc
Confidence               33444332111      00    00012345555555554       4444 9999999998774      678889


Q ss_pred             cHHHHHHHhhh
Q 048729          318 QKYLLREFAKS  328 (330)
Q Consensus       318 ~r~~l~~~~~~  328 (330)
                      +|+.+.+.|++
T Consensus       597 ~R~~~~~~y~~  607 (624)
T PRK12582        597 NQRAVLERRAA  607 (624)
T ss_pred             cHHHHHHHHHH
Confidence            99999888864

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.4e-37  Score=288.12  Aligned_cols=274  Identities=31%  Similarity=0.527  Sum_probs=220.9

Q ss_pred             cHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 048729           42 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHL  121 (330)
Q Consensus        42 T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~  121 (330)
                      ||+||.+.++++|+.|.+.|+++||+|+++++|++++++.++||+++|++++++++.++.+.+.++++..+++.+++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999998764


Q ss_pred             chHH------HHHHh----------ccC----c-----------------------------------------------
Q 048729          122 HTYL------LLEAL----------SLF----P-----------------------------------------------  134 (330)
Q Consensus       122 ~~~~------~~~~~----------~~~----~-----------------------------------------------  134 (330)
                      ....      +....          ...    .                                               
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~  160 (436)
T TIGR01923        81 LEEKDFQADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLP  160 (436)
T ss_pred             ccccceeecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccC
Confidence            3210      00000          000    0                                               


Q ss_pred             -------------------------------------------------------------------------hHHHHhh
Q 048729          135 -------------------------------------------------------------------------QRARLKA  141 (330)
Q Consensus       135 -------------------------------------------------------------------------~~~~~~~  141 (330)
                                                                                               ...+...
T Consensus       161 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~l~~~~~~G~~~~~~~~~~~~  240 (436)
T TIGR01923       161 LYHISGLSILFRWLIEGATLRIVDKFNQLLEMIANERVTHISLVPTQLNRLLDEGGHNENLRKILLGGSAIPAPLIEEAQ  240 (436)
T ss_pred             cHhHHHHHHHHHHHhcCceEEecchHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcCCCCceEEEEECCCCCCHHHHHHHH
Confidence                                                                                     0000001


Q ss_pred             ccCC---cccCceeEEEeC----C-------CCCcccCC--------CCceecEEEEecCcccccccCCchhhhccccCC
Q 048729          142 RQGV---KTVGLAEVDVVN----P-------ETGESVKR--------DGVSLGEVVLRGGCVTVGYFKDKEATRRCISDN  199 (330)
Q Consensus       142 ~~G~---~~~g~te~~i~d----~-------~~g~~~~~--------~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~  199 (330)
                      ..|.   ..||.||....-    .       ..|.+++.        +..+.|||+++|+.++.||+++++.+...+. +
T Consensus       241 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~  319 (436)
T TIGR01923       241 QYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGEIMVKGANLMKGYLYQGELTPAFEQ-Q  319 (436)
T ss_pred             HhCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCCCCceEEEEECCccchhhCCChhhhhhhhc-C
Confidence            1122   237777753210    0       02222221        1114599999999999999997777665554 7


Q ss_pred             CeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCC
Q 048729          200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTK  279 (330)
Q Consensus       200 g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  279 (330)
                      |||+|||+++++++|.+++.||.||++|++|.+|++.+||+.+.++|.|.++++++.+++..+..+.+++...++     
T Consensus       320 ~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-----  394 (436)
T TIGR01923       320 GWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD-----  394 (436)
T ss_pred             CCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC-----
Confidence            999999999999999999999999999999999999999999999999999999999877667778888877654     


Q ss_pred             CCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHH
Q 048729          280 KPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL  322 (330)
Q Consensus       280 ~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l  322 (330)
                       .+..++.+.+++.++.+.+|..++++++||+|++||++|++|
T Consensus       395 -~~~~~l~~~l~~~l~~~~~p~~i~~~~~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       395 -ISQAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL  436 (436)
T ss_pred             -CCHHHHHHHHHHhhhCCCCCeEEEEecCCCCCCCCceecccC
Confidence             567899999999999999999999999999999999999865

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-36  Score=289.72  Aligned_cols=304  Identities=24%  Similarity=0.268  Sum_probs=230.2

Q ss_pred             CHHHHHHHHHHhcCCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           16 TTLGFLERAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        16 ~~~~~l~~~~~~~p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      ++.+.|...+...|+.+++.+.  ++.+||.||.+++.++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~   82 (545)
T PRK07768          3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT   82 (545)
T ss_pred             hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence            5788888999999999999764  46899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHH-------HHHHHHhcCCcEEEEcccchHHHHHHh-------------c-------cCc------------
Q 048729           94 NINTRLDAHT-------LSVLLQHSESKLVFVDHLHTYLLLEAL-------------S-------LFP------------  134 (330)
Q Consensus        94 ~l~~~~~~~~-------l~~~l~~~~~~~i~~~~~~~~~~~~~~-------------~-------~~~------------  134 (330)
                      ++++..+.++       +.++++..+++.++++...........             .       ...            
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~i~~TSG  162 (545)
T PRK07768         83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLTVADLLAADPIDPVETGEDDLALMQLTSG  162 (545)
T ss_pred             ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcccCCceeehhhhcccCCCCcCCCCCCCEEEEEeCCC
Confidence            9988766543       345677778888887653321110000             0       000            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       163 tTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i  242 (545)
T PRK07768        163 STGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELI  242 (545)
T ss_pred             CCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHH
Confidence                                                                                            


Q ss_pred             -------------------------------------------------hHHHH--------------------------
Q 048729          135 -------------------------------------------------QRARL--------------------------  139 (330)
Q Consensus       135 -------------------------------------------------~~~~~--------------------------  139 (330)
                                                                       ....+                          
T Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~  322 (545)
T PRK07768        243 SKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLA  322 (545)
T ss_pred             HHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceE
Confidence                                                             00000                          


Q ss_pred             ------------------------------------hhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccc
Q 048729          140 ------------------------------------KARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTV  183 (330)
Q Consensus       140 ------------------------------------~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~  183 (330)
                                                          ..+.|.|++|. +++++|+ +|++++.+  +.|||+++|+.++.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~-~~~i~~~-~~~~~~~g--~~Gel~v~~~~~~~  398 (545)
T PRK07768        323 VSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGL-EVRVVDE-DGQVLPPR--GVGVIELRGESVTP  398 (545)
T ss_pred             EEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCC-EEEEECC-CCCCCCCC--CEEEEEEccCcccc
Confidence                                                00233444454 5666775 67888777  78999999999999


Q ss_pred             cccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeec--CCCC
Q 048729          184 GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARP--DMFW  261 (330)
Q Consensus       184 gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~--~~~~  261 (330)
                      ||++.+...... ..+|||+|||++++|++|.++++||.||++|++|++|++.+||+.+.++|+|.++.|++..  +...
T Consensus       399 gy~~~~~~~~~~-~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~  477 (545)
T PRK07768        399 GYLTMDGFIPAQ-DADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHS  477 (545)
T ss_pred             cccCCCCCcccc-cCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCC
Confidence            999865544333 3378999999999999999999999999999999999999999999999999998777654  3333


Q ss_pred             CceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC--CCCceEEEcc--CCCCCCCCcccHHHHHHHhh
Q 048729          262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY--MVPRKVVFSE--ELPKTSTGKIQKYLLREFAK  327 (330)
Q Consensus       262 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~p~~~~~v~--~lP~t~~GKv~r~~l~~~~~  327 (330)
                      ++.+.++++......   .....++.+.+++.+...  ..|..+.+++  +||+|++||++|+.|++.|.
T Consensus       478 ~~~~~~~v~~~~~~~---~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~  544 (545)
T PRK07768        478 REGFAVAVESNAFED---PAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT  544 (545)
T ss_pred             ceEEEEEEEeccccc---HHHHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence            445555554433221   022345666776665444  5788888876  89999999999999999875

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=1.4e-36  Score=282.93  Aligned_cols=313  Identities=28%  Similarity=0.399  Sum_probs=244.0

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEe----CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVY----NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPM   87 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~----~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~   87 (330)
                      ....++..++.+.++.+|+.+++..    ..+.+||+|+.+++.++|+.|.+.|+..||+|++++.|+++|+.+.+||+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~   92 (613)
T COG1022          13 AEIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILA   92 (613)
T ss_pred             hhcccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            3456899999999999999888885    458899999999999999999999997799999999999999999999999


Q ss_pred             cCcEEeecCCCCCHHHHHHHHHhcCCcEEEEccc-chHHHHHHhccCc--------------------------------
Q 048729           88 SGAILNNINTRLDAHTLSVLLQHSESKLVFVDHL-HTYLLLEALSLFP--------------------------------  134 (330)
Q Consensus        88 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~-~~~~~~~~~~~~~--------------------------------  134 (330)
                      +|++.+|+.+..+++.+.++|+.++++++|++.. ..+.+.......+                                
T Consensus        93 ~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (613)
T COG1022          93 LGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGIS  172 (613)
T ss_pred             cCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccch
Confidence            9999999999999999999999999999999763 2222222111000                                


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       173 ~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~  252 (613)
T COG1022         173 LFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEG  252 (613)
T ss_pred             hhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       253 ~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~  332 (613)
T COG1022         253 GLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGP  332 (613)
T ss_pred             HHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCC
Confidence                                                                                            


Q ss_pred             -----------------------------------hHHHHhhccCCcc---cCceeEE---EeC-C------CCCcccCC
Q 048729          135 -----------------------------------QRARLKARQGVKT---VGLAEVD---VVN-P------ETGESVKR  166 (330)
Q Consensus       135 -----------------------------------~~~~~~~~~G~~~---~g~te~~---i~d-~------~~g~~~~~  166 (330)
                                                         ....+..++|.|+   ||+||+.   .+. +      .-|+++|.
T Consensus       333 ~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~  412 (613)
T COG1022         333 LSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPG  412 (613)
T ss_pred             cchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEccccCcccCCcCCcCCC
Confidence                                               3334456667665   8998842   222 1      13555554


Q ss_pred             CCc---eecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEE-eCCeecCHHHHHHHH
Q 048729          167 DGV---SLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVII-SGGENICSAEVESVL  242 (330)
Q Consensus       167 ~~~---~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik-~~G~~v~~~~iE~~l  242 (330)
                      -+.   +.|||+|+||++|+|||++|+.|.+.|.+||||+|||+|.+|++|+|.++||++|.|| .+|++|.|..||+.+
T Consensus       413 ~evKI~d~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l  492 (613)
T COG1022         413 IEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKL  492 (613)
T ss_pred             ceEEEccCceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHH
Confidence            321   4599999999999999999999999999999999999999999999999999999999 899999999999999


Q ss_pred             hcCcCcceEEEEeecCCCCCceeEEEEEecCCccc--------CCCCCH------HHHHHHH-------HhcCCCCCCCc
Q 048729          243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLEL--------TKKPTE------KEIIEYC-------RARLPRYMVPR  301 (330)
Q Consensus       243 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~------~~l~~~l-------~~~l~~~~~p~  301 (330)
                      .++|-|.++.|++....    .+.|+|++....-.        ....+.      ..+.+.+       ..++..++...
T Consensus       493 ~~~~~I~qi~vvg~~k~----~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~  568 (613)
T COG1022         493 AKSPLIEQICVVGDDKK----FLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIK  568 (613)
T ss_pred             hcCCCeeEEEEEecCCc----ceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhh
Confidence            99999999999994333    57788887653210        000011      1222222       22234456666


Q ss_pred             eEEEcc-CCC-----CCCCCcccHHHHHHHhhh
Q 048729          302 KVVFSE-ELP-----KTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       302 ~~~~v~-~lP-----~t~~GKv~r~~l~~~~~~  328 (330)
                      .+++.+ ++.     .|++-|++|..+.+.+.+
T Consensus       569 ~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~  601 (613)
T COG1022         569 KFVLLPKEFTPENGELTPTLKLKRHVILDRYKD  601 (613)
T ss_pred             eeeecccccccccCccccchhhhHHHHHHhhhh
Confidence            666544 444     589999999999988753

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=4.2e-36  Score=282.80  Aligned_cols=277  Identities=18%  Similarity=0.193  Sum_probs=208.7

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|++.+...+...   ....++.++|++....|.++.+ +..+++++..|+.++..+....+..+...+++.+++++...
T Consensus       139 ~sh~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~v  215 (499)
T PLN03051        139 WTHLSPLRCASDG---WAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLV  215 (499)
T ss_pred             EccchHHHHHHHH---HHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeC
Confidence            7777665433322   2345888999999888876532 34567888999998877655667889999999999999998


Q ss_pred             ccchHHHHHHhc------cCc-----------------h-HHH------------------------------HhhccCC
Q 048729          120 HLHTYLLLEALS------LFP-----------------Q-RAR------------------------------LKARQGV  145 (330)
Q Consensus       120 ~~~~~~~~~~~~------~~~-----------------~-~~~------------------------------~~~~~G~  145 (330)
                      |..+..+.....      ...                 . ...                              ...++|.
T Consensus       216 P~~~~~l~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~  295 (499)
T PLN03051        216 PSIVKAWRHTGAFAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFST  295 (499)
T ss_pred             HHHHHHHHhcCccccccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccC
Confidence            887765543211      000                 0 000                              0124566


Q ss_pred             cccCceeEEEeCCCCCcccCCCCceecEEEEecCcc--cccccCCchhhhccccCCC----------eEEeCceEEEecC
Q 048729          146 KTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCV--TVGYFKDKEATRRCISDNG----------WFYTGDIGVMHAD  213 (330)
Q Consensus       146 ~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~--~~gy~~~~~~~~~~~~~~g----------~~~TGD~~~~~~~  213 (330)
                      |.+|. +++|+|+ +|++++.+..+.|||+++|+.+  +.||++++. +. .+. +|          ||+|||+|++|+|
T Consensus       296 p~~~~-~~~ivd~-~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~~-~~~-~g~~~~~~~~~~~~~TGDlg~~d~d  370 (499)
T PLN03051        296 ASLGT-RFVLLND-NGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-DK-VYY-KGMPMYGSKGMPLRRHGDIMKRTPG  370 (499)
T ss_pred             CCCCc-eEEEECC-CCCCCCCCCCcceEEEEecCcCCCCccccCCcc-cc-eee-ecCCccccCCcceeecCCeEEECCC
Confidence            66775 7788887 7888887632479999999976  589997653 33 332 33          7999999999999


Q ss_pred             ceEEEEecCCCeEEeCCeecCHHHHHHHHhc-CcCcceEEEEeecCCCCC-ceeEEEE---EecCCcccCCCCCHHHHHH
Q 048729          214 GYVEIKDRSKDVIISGGENICSAEVESVLYS-ITAVNEAAVVARPDMFWG-EIPCAFV---SLKRDLELTKKPTEKEIIE  288 (330)
Q Consensus       214 G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~-~~~~~~v---~~~~~~~~~~~~~~~~l~~  288 (330)
                      |+++|+||.||+||++|++|+|.+||++|.+ ||+|.+++|++.+++..+ +.++++|   +++++...   .+.+++++
T Consensus       371 G~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~---~~~~~l~~  447 (499)
T PLN03051        371 GYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQ---ARPEALQK  447 (499)
T ss_pred             CcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccc---cchHHHHH
Confidence            9999999999999999999999999999996 999999999999998877 6788888   66655310   34455655


Q ss_pred             HH----HhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          289 YC----RARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       289 ~l----~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .+    +++|+++..|..+.++++||+|++||++|++|++.+.+
T Consensus       448 ~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~  491 (499)
T PLN03051        448 KFQEAIQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKK  491 (499)
T ss_pred             HHHHHHHhhcCCccCCceEEEcCCCCCCCCccHHHHHHHHHHHH
Confidence            54    56687777777899999999999999999999987743

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-35  Score=271.22  Aligned_cols=264  Identities=23%  Similarity=0.288  Sum_probs=205.7

Q ss_pred             EEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcC
Q 048729           33 SLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSE  112 (330)
Q Consensus        33 a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~  112 (330)
                      ++++.++++||+||.++++++|++|. .|+++|++|+++++++++++..++|++++|++++|+++..+.+.+..++++.+
T Consensus         1 ~~~~~~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~   79 (414)
T PRK08308          1 MLIVNDEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG   79 (414)
T ss_pred             CeEecCceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence            36778899999999999999999985 68999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEcccchHH-------------------------------------HH---HHhcc---------Cc---------
Q 048729          113 SKLVFVDHLHTYL-------------------------------------LL---EALSL---------FP---------  134 (330)
Q Consensus       113 ~~~i~~~~~~~~~-------------------------------------~~---~~~~~---------~~---------  134 (330)
                      +++++++......                                     +.   .....         .+         
T Consensus        80 ~~~~i~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~  159 (414)
T PRK08308         80 CHGLLYGESDFTKLEAVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLIC  159 (414)
T ss_pred             CCEEEecCcccccccCCCCCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHH
Confidence            9988875311000                                     00   00000         00         


Q ss_pred             --------------------------------------------------------------------hHHHHhh--ccC
Q 048729          135 --------------------------------------------------------------------QRARLKA--RQG  144 (330)
Q Consensus       135 --------------------------------------------------------------------~~~~~~~--~~G  144 (330)
                                                                                          ....+..  ..-
T Consensus       160 ~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~  239 (414)
T PRK08308        160 GVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPGTFQFHAVMTSGTPLPEAWFYKLRERTTYM  239 (414)
T ss_pred             HHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCccccccEEEEccCCCCHHHHHHHHHhCChh
Confidence                                                                                0000000  011


Q ss_pred             CcccCceeEEEeC--C------CCCcccCCC-------CceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEE
Q 048729          145 VKTVGLAEVDVVN--P------ETGESVKRD-------GVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGV  209 (330)
Q Consensus       145 ~~~~g~te~~i~d--~------~~g~~~~~~-------~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~  209 (330)
                      ...||.||....-  .      .-|++++..       .++.||+++++                   .++||+|||+++
T Consensus       240 ~~~YG~tE~~~~~~~~~~~~~~~~G~p~~~~~~~~~~~~~~~gel~v~~-------------------~~~~~~TGDl~~  300 (414)
T PRK08308        240 MQQYGCSEAGCVSICPDMKSHLDLGNPLPHVSVSAGSDENAPEEIVVKM-------------------GDKEIFTKDLGY  300 (414)
T ss_pred             hhccCccccCCeeecCCCCCCCccCccCCCeEEEEecCCCCCceEEEEc-------------------CCceEECCceEE
Confidence            2347777754211  0      013333210       01345555543                   168999999999


Q ss_pred             EecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHH
Q 048729          210 MHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEY  289 (330)
Q Consensus       210 ~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~  289 (330)
                      +|++|+++++||.||++|++|++|+|.+||+.+.++|+|.+++|++..++..++.+.++++...+      .+.+++++.
T Consensus       301 ~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~------~~~~~l~~~  374 (414)
T PRK08308        301 KSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEE------IDPVQLREW  374 (414)
T ss_pred             ECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC------CCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988878888888876543      567899999


Q ss_pred             HHhcCCCCCCCceEEEccCCCCCCCCcccHHHH
Q 048729          290 CRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL  322 (330)
Q Consensus       290 l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l  322 (330)
                      ++++|+.+.+|..+++++++|+|++||++|+.|
T Consensus       375 l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~  407 (414)
T PRK08308        375 CIQHLAPYQVPHEIESVTEIPKNANGKVSRKLL  407 (414)
T ss_pred             HHHhCccccCCcEEEEeccCCCCCCcCeehhhh
Confidence            999999999999999999999999999999944

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=7.9e-35  Score=268.13  Aligned_cols=313  Identities=24%  Similarity=0.315  Sum_probs=253.8

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCcEEEeCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Q 048729           10 ANSTPLTTLGFLERAAAAYTDCPSLVYNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYEL   81 (330)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~p~~~a~~~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~   81 (330)
                      +...+.|+++.|.+.+..+|+.+++....        +.+||.|..+++.+++..|..+|+++++.|++++-|+++|+++
T Consensus        70 ~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis  149 (691)
T KOG1256|consen   70 PFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIIS  149 (691)
T ss_pred             CCCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHh
Confidence            45678999999999999999999998743        6699999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc-ccchHHHHHHhcc--Cc------------------------
Q 048729           82 QFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD-HLHTYLLLEALSL--FP------------------------  134 (330)
Q Consensus        82 ~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~-~~~~~~~~~~~~~--~~------------------------  134 (330)
                      .+||...|.+.+|+-..++++++.++++...+.+++++ +.....+.+....  .+                        
T Consensus       150 ~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv  229 (691)
T KOG1256|consen  150 EMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGV  229 (691)
T ss_pred             HHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCe
Confidence            99999999999999999999999999999999999998 5444444432221  11                        


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       230 ~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyL  309 (691)
T KOG1256|consen  230 EVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYL  309 (691)
T ss_pred             EEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       310 PLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~  389 (691)
T KOG1256|consen  310 PLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKL  389 (691)
T ss_pred             cHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------------------------hHHHH
Q 048729          135 ---------------------------------------------------------------------------QRARL  139 (330)
Q Consensus       135 ---------------------------------------------------------------------------~~~~~  139 (330)
                                                                                                 .....
T Consensus       390 ~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~  469 (691)
T KOG1256|consen  390 EHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDNV  469 (691)
T ss_pred             HHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCCC
Confidence                                                                                       11124


Q ss_pred             hhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEE
Q 048729          140 KARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIK  219 (330)
Q Consensus       140 ~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~  219 (330)
                      .+++|.|++|. +++++|.....--..+  ..|||+++|++++.||+++|+.|.+.+++|||++|||+|++|++|.+.+.
T Consensus       470 lgsvG~p~p~~-~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~Ii  546 (691)
T KOG1256|consen  470 LGSVGPPVPGN-EVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKII  546 (691)
T ss_pred             CCCcCCcccCc-eEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEE
Confidence            67788888886 8999876455545555  45999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCeEE-eCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccC------CC----------CC
Q 048729          220 DRSKDVII-SGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELT------KK----------PT  282 (330)
Q Consensus       220 GR~dd~ik-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~------~~----------~~  282 (330)
                      ||.++++| ..|+.|.|..||++..+.+.|.+.+|.+....   ..++++|++++.....      ..          ..
T Consensus       547 dRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~---~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~  623 (691)
T KOG1256|consen  547 DRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLR---SFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDV  623 (691)
T ss_pred             ecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcch---hcEEEEEecChhhchhhHHHccCchhHHHHhcChhh
Confidence            99999999 89999999999999999999999999987642   3688888886543210      00          01


Q ss_pred             HHHHHHHH-----HhcCCCCCCCceEEE------ccCCCCCCCCcccHHHHHHHhhh
Q 048729          283 EKEIIEYC-----RARLPRYMVPRKVVF------SEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       283 ~~~l~~~l-----~~~l~~~~~p~~~~~------v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .+.+.+.+     .+.+..+..-..|.+      ++.--.||+-|++|..+.+.|++
T Consensus       624 k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~  680 (691)
T KOG1256|consen  624 KEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKK  680 (691)
T ss_pred             HHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHH
Confidence            11122222     123455555555555      33445699999999999999864

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1e-31  Score=242.71  Aligned_cols=290  Identities=20%  Similarity=0.254  Sum_probs=209.0

Q ss_pred             hcCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEee--
Q 048729           27 AYTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNN--   94 (330)
Q Consensus        27 ~~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~--   94 (330)
                      ..++.++++- ++        -.+|+..+..........+     ...+++...+|.+..+ +..++..+..|+.++.  
T Consensus        32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~  106 (358)
T PRK07824         32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL-----GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELD  106 (358)
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc-----CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecC
Confidence            4466667664 32        2378888876665554433     2345777777765433 3345666777887766  


Q ss_pred             cCCCCCHHHHHHHHHhcCCc--EEEEcccchHHHHHHhcc---Cc--------------hHHHHhhccCC---cccCcee
Q 048729           95 INTRLDAHTLSVLLQHSESK--LVFVDHLHTYLLLEALSL---FP--------------QRARLKARQGV---KTVGLAE  152 (330)
Q Consensus        95 l~~~~~~~~l~~~l~~~~~~--~i~~~~~~~~~~~~~~~~---~~--------------~~~~~~~~~G~---~~~g~te  152 (330)
                      ....+.+..+...+++.+..  +....+..+..+......   ..              ...+.....|.   ..||.||
T Consensus       107 ~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE  186 (358)
T PRK07824        107 VSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAATAALAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSE  186 (358)
T ss_pred             cCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccccCCcccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCc
Confidence            45667888999999988843  333333333222211100   00              11111112243   4599988


Q ss_pred             EEEeCCCCCcccCCCCc--eecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCC
Q 048729          153 VDVVNPETGESVKRDGV--SLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGG  230 (330)
Q Consensus       153 ~~i~d~~~g~~~~~~~~--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G  230 (330)
                      +...-...|.+++.-..  ..|||+++|+.++.||++++...  .+..+|||+|||++++ ++|.+++.||.||+||++|
T Consensus       187 ~~~~~~~~G~~~~g~~v~i~~Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G  263 (358)
T PRK07824        187 TSGGCVYDGVPLDGVRVRVEDGRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGG  263 (358)
T ss_pred             cCCCcCcCceeCCCCEEEecCCEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEECC
Confidence            64321113444332100  23999999999999999988643  3444789999999999 7999999999999999999


Q ss_pred             eecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCC
Q 048729          231 ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELP  310 (330)
Q Consensus       231 ~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP  310 (330)
                      ++|+|.+||+.+.++|+|.+++|++..++..++.++++++...+..    ...+++++.++++|+.+++|..++++++||
T Consensus       264 ~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~----~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP  339 (358)
T PRK07824        264 LTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPA----PTLEALRAHVARTLDRTAAPRELHVVDELP  339 (358)
T ss_pred             EEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCC----cCHHHHHHHHHhhCccccCCCEEEEecCCC
Confidence            9999999999999999999999999998888888989887766544    678999999999999999999999999999


Q ss_pred             CCCCCcccHHHHHHHhhh
Q 048729          311 KTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       311 ~t~~GKv~r~~l~~~~~~  328 (330)
                      +|++||++|++|++++.+
T Consensus       340 ~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        340 RRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             CCCCccccHHHHHHHhhc
Confidence            999999999999999864

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-31  Score=237.75  Aligned_cols=316  Identities=24%  Similarity=0.318  Sum_probs=247.4

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCcEEEeCC-----------------------eeecHHHHHHHHHHHHHHHHHcCCCCCC
Q 048729           10 ANSTPLTTLGFLERAAAAYTDCPSLVYNN-----------------------TTYTWSETHRRCLQVASSLSSVGIQRGH   66 (330)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~p~~~a~~~~~-----------------------~~~T~~el~~~~~~~a~~L~~~g~~~gd   66 (330)
                      +...-.|+.+++.+.++++.++.++-..+                       ..+||.|+..++..+++.|...|+++++
T Consensus        36 ~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e  115 (678)
T KOG1180|consen   36 PNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKE  115 (678)
T ss_pred             CCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            34455699999999999999999998531                       3389999999999999999999999877


Q ss_pred             E-EEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhccCc-----------
Q 048729           67 V-VSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP-----------  134 (330)
Q Consensus        67 ~-V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-----------  134 (330)
                      . ++++++.+.+|+..++||++-+..++-+-..+..+.+.|-|.+++++.||++..++..+..-.....           
T Consensus       116 ~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~i  195 (678)
T KOG1180|consen  116 TKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIYFDPI  195 (678)
T ss_pred             CeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEEecCC
Confidence            7 9999999999999999999999999999999999999999999999999999988876554332222           


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       196 d~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~  275 (678)
T KOG1180|consen  196 DYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPE  275 (678)
T ss_pred             CCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcc
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       276 lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~k  355 (678)
T KOG1180|consen  276 LGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSK  355 (678)
T ss_pred             cCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------hHHHHhhccCCcc---cC
Q 048729          135 --------------------------------------------------------------QRARLKARQGVKT---VG  149 (330)
Q Consensus       135 --------------------------------------------------------------~~~~~~~~~G~~~---~g  149 (330)
                                                                                    .+.-...+.++|+   ||
T Consensus       356 V~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYG  435 (678)
T KOG1180|consen  356 VNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYG  435 (678)
T ss_pred             HhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhcccccccccc
Confidence                                                                          1111122233333   55


Q ss_pred             ce--------------------------eEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC-CC--
Q 048729          150 LA--------------------------EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD-NG--  200 (330)
Q Consensus       150 ~t--------------------------e~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-~g--  200 (330)
                      .|                          +++++|-+.|--.+.+.--.|||+++|++++.||+++++.+.+.|.. +|  
T Consensus       436 LTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~  515 (678)
T KOG1180|consen  436 LTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQR  515 (678)
T ss_pred             ccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcE
Confidence            54                          45556543332222221025999999999999999999999999977 88  


Q ss_pred             eEEeCceEEEecCceEEEEecCCCeEE-eCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCccc--
Q 048729          201 WFYTGDIGVMHADGYVEIKDRSKDVII-SGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLEL--  277 (330)
Q Consensus       201 ~~~TGD~~~~~~~G~l~~~GR~dd~ik-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--  277 (330)
                      ||+|||+|++.+||.+.+.+|.+|.+| .+|+-|++.-+|+.+...|-|+...|.+....   ..++++|+++++.-.  
T Consensus       516 WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~---s~~VaiVVPn~~~lt~l  592 (678)
T KOG1180|consen  516 WFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNK---SKPVAIVVPNQKHLTKL  592 (678)
T ss_pred             EEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEeccccc---ceeEEEEcCCchHHHHH
Confidence            999999999999999999999999999 89999999999999999999999999987664   368888888764210  


Q ss_pred             --CCCCCH-------------HHHHHHH-----HhcCCCCCCCceEEEccC------CCCCCCCcccHHHHHHHhhh
Q 048729          278 --TKKPTE-------------KEIIEYC-----RARLPRYMVPRKVVFSEE------LPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       278 --~~~~~~-------------~~l~~~l-----~~~l~~~~~p~~~~~v~~------lP~t~~GKv~r~~l~~~~~~  328 (330)
                        ......             +++.+.+     .++|...++|..|++.++      --.|+.-|+.|+.++..|++
T Consensus       593 A~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~  669 (678)
T KOG1180|consen  593 AEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKK  669 (678)
T ss_pred             HHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHH
Confidence              000111             1111111     456899999999999873      23566779999999988753

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.97  E-value=3.9e-30  Score=236.95  Aligned_cols=206  Identities=30%  Similarity=0.483  Sum_probs=176.1

Q ss_pred             HHHHHHhcCCCcEEEe-CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCC
Q 048729           21 LERAAAAYTDCPSLVY-NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRL   99 (330)
Q Consensus        21 l~~~~~~~p~~~a~~~-~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~   99 (330)
                      |.++|+++||++|+++ .++++||.||.+.++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+++.+
T Consensus         1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~   80 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL   80 (417)
T ss_dssp             HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred             ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence            6789999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCcEEEE----cccchH---------------------------HHHHHh------------ccCc--
Q 048729          100 DAHTLSVLLQHSESKLVFV----DHLHTY---------------------------LLLEAL------------SLFP--  134 (330)
Q Consensus       100 ~~~~l~~~l~~~~~~~i~~----~~~~~~---------------------------~~~~~~------------~~~~--  134 (330)
                      +.+.+.++++..+++++++    +.....                           .+....            ....  
T Consensus        81 ~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  160 (417)
T PF00501_consen   81 SEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASLSDEPQSPEDSPDDPAFI  160 (417)
T ss_dssp             SHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHHCHCSHSTTHTTTSEEEE
T ss_pred             ccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccccccccccccccccccccCCCCccceeEe
Confidence            9999999999999999996    110000                           000000            0000  


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       161 ~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~  240 (417)
T PF00501_consen  161 LFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLGDRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLL  240 (417)
T ss_dssp             EEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTTTEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHH
T ss_pred             eccccccccccccccccccccccccccccccccccCceEEeeccccccccccccccccccccccccccccccccccccch
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       241 ~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  320 (417)
T PF00501_consen  241 ELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIAT  320 (417)
T ss_dssp             HHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEE
T ss_pred             hcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccceecccccccceeee
Confidence                                                                                            


Q ss_pred             -h--HHH--HhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEE
Q 048729          135 -Q--RAR--LKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGV  209 (330)
Q Consensus       135 -~--~~~--~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~  209 (330)
                       .  ...  ...++|.|++|+ +++|+|++++++++.+  +.|||+++|++++.||+++++.+.+.|.++|||+|||+|+
T Consensus       321 ~~~~~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~g--~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~  397 (417)
T PF00501_consen  321 IRPPEDDIEKPGSVGKPLPGV-EVKIVDPNTGEPLPPG--EPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGR  397 (417)
T ss_dssp             EEETTTHHSSTTSEBEESTTE-EEEEECTTTSSBESTT--SEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEE
T ss_pred             ccccccccccccccccccccc-cccccccccccccccc--ccccccccCCccceeeeccccccccccccccceecceEEE
Confidence             1  111  234678888885 9999999779999988  8899999999999999999999999888568999999999


Q ss_pred             EecCceEEEEecCCCeEEeC
Q 048729          210 MHADGYVEIKDRSKDVIISG  229 (330)
Q Consensus       210 ~~~~G~l~~~GR~dd~ik~~  229 (330)
                      +|++|+++++||.||+||++
T Consensus       398 ~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  398 LDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             EETTSEEEEEEEGSCEEEET
T ss_pred             ECCCCeEEEEEeeCCEEEeC
Confidence            99999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.96  E-value=1.2e-28  Score=226.27  Aligned_cols=208  Identities=23%  Similarity=0.301  Sum_probs=174.5

Q ss_pred             cHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcc
Q 048729           42 TWSETHRRCLQVASSLSS-VGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDH  120 (330)
Q Consensus        42 T~~el~~~~~~~a~~L~~-~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~  120 (330)
                      ||.||.+.+.+++++|.+ .|+++||+|+++++|+++++++++||+.+|++++|+++..+.+.+.++++..+++.+++++
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999997 9999999999999999999999999999999999999999999999999999999999976


Q ss_pred             cchHHHHHHh-----------------------cc------Cc-------------------------------------
Q 048729          121 LHTYLLLEAL-----------------------SL------FP-------------------------------------  134 (330)
Q Consensus       121 ~~~~~~~~~~-----------------------~~------~~-------------------------------------  134 (330)
                      .....+....                       ..      ..                                     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~~~~~  160 (408)
T TIGR01733        81 ALASRLAGLVLPIILVDPLELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDP  160 (408)
T ss_pred             chhhhccccCCceEEechhhhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCC
Confidence            5443221100                       00      00                                     


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       161 ~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~v~  240 (408)
T TIGR01733       161 DDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALPPALASLRLVI  240 (408)
T ss_pred             CceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhhhcccCceEEE
Confidence                                                                                            


Q ss_pred             ---------hHHH------------------------------------HhhccCCcccCceeEEEeCCCCCcccCCCCc
Q 048729          135 ---------QRAR------------------------------------LKARQGVKTVGLAEVDVVNPETGESVKRDGV  169 (330)
Q Consensus       135 ---------~~~~------------------------------------~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~  169 (330)
                               ....                                    ...++|.+++|. +++|+++ ++++++.+  
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~g--  316 (408)
T TIGR01733       241 LGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANT-RLYVLDD-DLRPVPVG--  316 (408)
T ss_pred             EeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCc-eEEEECC-CCCCCCCC--
Confidence                     0000                                    022355556664 7777777 57888877  


Q ss_pred             eecEEEEecCcccccccCCchhhhccccCC------C--eEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHH
Q 048729          170 SLGEVVLRGGCVTVGYFKDKEATRRCISDN------G--WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESV  241 (330)
Q Consensus       170 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~------g--~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~  241 (330)
                      +.|||+++|++++.||+++++.+.+.|..+      |  ||+|||++++|++|++++.||.+|+++++|++++|.+||+.
T Consensus       317 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~  396 (408)
T TIGR01733       317 VVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAA  396 (408)
T ss_pred             CceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHH
Confidence            789999999999999999998887776422      3  99999999999999999999999999999999999999999


Q ss_pred             HhcCcCcceEEE
Q 048729          242 LYSITAVNEAAV  253 (330)
Q Consensus       242 l~~~~~v~~~~v  253 (330)
                      +..+++|.+++|
T Consensus       397 l~~~~~v~~~~v  408 (408)
T TIGR01733       397 LLRHPGVREAVV  408 (408)
T ss_pred             HhcCcchhhhcC
Confidence            999999998875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.95  E-value=1.6e-25  Score=211.37  Aligned_cols=298  Identities=18%  Similarity=0.242  Sum_probs=231.4

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeC------CeeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYN------NTTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPM   87 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~------~~~~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~~~~~la~~~   87 (330)
                      .++.|+|..++.++||.+|+..-      ..++||+++++++.+++.+|. +..+++||.|+++.+++.+++++++||+.
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly  849 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY  849 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence            79999999999999999999973      367999999999999999999 66799999999999999999999999999


Q ss_pred             cCcEEeecCCCCC------HHHHHHHHHhcCCcEEEEcccchHHHHHHhccCc---------------------------
Q 048729           88 SGAILNNINTRLD------AHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP---------------------------  134 (330)
Q Consensus        88 ~G~~~~~l~~~~~------~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------------  134 (330)
                      +|++++|+++.-.      ...+..+++.+++..|+++......+........                           
T Consensus       850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~~k~~~~~~  929 (1363)
T KOG3628|consen  850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETIRKRKKNIK  929 (1363)
T ss_pred             cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhhhhhhhhhh
Confidence            9999999987332      2468889999999999998877666543221111                           


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       930 k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVys 1009 (1363)
T KOG3628|consen  930 KLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYS 1009 (1363)
T ss_pred             ccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHc
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus      1010 Gh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~ali~sf~ 1089 (1363)
T KOG3628|consen 1010 GHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIALIASFK 1089 (1363)
T ss_pred             CCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------------------hHHH-----------------HhhccCCcccCceeEEEeC
Q 048729          135 ----------------------------------------QRAR-----------------LKARQGVKTVGLAEVDVVN  157 (330)
Q Consensus       135 ----------------------------------------~~~~-----------------~~~~~G~~~~g~te~~i~d  157 (330)
                                                              +...                 ...-.|....+ |++.|++
T Consensus      1090 klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~-~~i~Ivn 1168 (1363)
T KOG3628|consen 1090 KLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVY-TDIAIVN 1168 (1363)
T ss_pred             HHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCccccc-ceeEEeC
Confidence                                                    0000                 01112444566 4999999


Q ss_pred             CCCCcccCCCCceecEEEEecCcccccccCCchhhh-ccc---------cCCCeEEeCceEEEe------cC----ceEE
Q 048729          158 PETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATR-RCI---------SDNGWFYTGDIGVMH------AD----GYVE  217 (330)
Q Consensus       158 ~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~-~~~---------~~~g~~~TGD~~~~~------~~----G~l~  217 (330)
                      |++-.+|..+  +.||||++|.+-+.+|++..+... ..|         ...+|-||||+|+..      .+    .-+|
T Consensus      1169 PEtk~pc~dg--e~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~Ly 1246 (1363)
T KOG3628|consen 1169 PETKGPCRDG--ELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLY 1246 (1363)
T ss_pred             CccccccccC--CcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEE
Confidence            9999999998  889999999998888885432211 111         113599999999973      23    3489


Q ss_pred             EEecCCCeEEeCCeecCHHHHHHHHhc-CcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHH-HhcCC
Q 048729          218 IKDRSKDVIISGGENICSAEVESVLYS-ITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYC-RARLP  295 (330)
Q Consensus       218 ~~GR~dd~ik~~G~~v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l-~~~l~  295 (330)
                      ++|-.++.+.++|.+.+|.+||..+.. ||.|..|+|+-...     .+++++++...      .....+.-.+ +..|.
T Consensus      1247 VlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g-----lvVvviE~~gq------~~~~~LvPlIv~~vL~ 1315 (1363)
T KOG3628|consen 1247 VLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATG-----LVVVVIECHGQ------QELADLVPLIVNVVLE 1315 (1363)
T ss_pred             EeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeCC-----eEEEEEEecCc------hhHhhhhHHHHHHHHh
Confidence            999999999999999999999999977 89999999997643     67788887773      2233333333 34455


Q ss_pred             CCC-CCceEEEcc--CCCCCCCCcccHHHHHHHh
Q 048729          296 RYM-VPRKVVFSE--ELPKTSTGKIQKYLLREFA  326 (330)
Q Consensus       296 ~~~-~p~~~~~v~--~lP~t~~GKv~r~~l~~~~  326 (330)
                      .+. +-+.+.||+  .||+++.|..+|..+++.+
T Consensus      1316 eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w 1349 (1363)
T KOG3628|consen 1316 EHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSW 1349 (1363)
T ss_pred             hcceEEEEEEEecCCccccCCchhhHHHHHHHHH
Confidence            555 555566776  7999999999999998865

>PTZ00297 pantothenate kinase; Provisional

Probab=99.93  E-value=2.2e-23  Score=211.57  Aligned_cols=105  Identities=18%  Similarity=0.246  Sum_probs=96.7

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeC---C--eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcC
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYN---N--TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG   89 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~---~--~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G   89 (330)
                      .|+.++|.+.++++|+++|+...   +  +.+||+|+.+++.++|..|.+.|+++||+|+++++|+++|+++++||+.+|
T Consensus       427 ~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~G  506 (1452)
T PTZ00297        427 RSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYG  506 (1452)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            59999999999999999999732   2  679999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 048729           90 AILNNINTRLDAHTLSVLLQHSESKLVFVDHL  121 (330)
Q Consensus        90 ~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~  121 (330)
                      ++++|+.+  +.+++.++++..+++++|++..
T Consensus       507 aV~VPly~--t~~eL~yIL~~S~akvVfv~~~  536 (1452)
T PTZ00297        507 FTTLPLVG--KGSTMRTLIDEHKIKVVFADRN  536 (1452)
T ss_pred             CEEEeCCC--CHHHHHHHHHhcCCcEEEEchh
Confidence            99999974  4678999999999999998654

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.93  E-value=6.6e-23  Score=185.63  Aligned_cols=273  Identities=18%  Similarity=0.156  Sum_probs=184.2

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCC--CCCEEEEECCCCHH--HHH
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQ--RGHVVSVVAPNVPS--MYE   80 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~--~gd~V~~~~~~~~~--~~~   80 (330)
                      ..++.+++.-..+.+-+..+++. ++        -.+|++.+...+..+++.+   ++.  +.|+++.++|.++.  ++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~dr~l~~~Pl~h~~g~~~  155 (386)
T TIGR02372        79 RRRIGEWVDLIAHHSTPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL---GERPPPVRRVISCVPAHHLYGFLF  155 (386)
T ss_pred             hccHHHHHHHHHhcCCCCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh---CcCCCCCCeEEEeCCcHHHHHHHH
Confidence            44667777766666645555543 43        2389999987777776654   543  44689999998743  345


Q ss_pred             HHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhccCc--------------hHHHHhh---cc
Q 048729           81 LQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP--------------QRARLKA---RQ  143 (330)
Q Consensus        81 ~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--------------~~~~~~~---~~  143 (330)
                      .++..+..|+.++... .+++..+...++..  ++++..|.++..+........              ....+..   ..
T Consensus       156 ~~l~~l~~G~~vv~~~-~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~~~l~slr~i~gGa~l~~~l~~~~~~~g~~~  232 (386)
T TIGR02372       156 SCLLPSRRGLEAKQLA-AAPASGIMRHARPG--DLIVGTPFIWEQLADLDYRLPGVVGVSSGAPSTAATWRCLLAAGLAR  232 (386)
T ss_pred             HHHHHHHCCCeEEecC-CCChHHHHHhhccC--CEEEECcHHHHHHHhhCcCCCcceeEecCCCCCHHHHHHHHHhcccc
Confidence            5577778899887665 46666655555532  678888888876654322111              1111111   11


Q ss_pred             CCcccCceeEEEeCC-----CCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEE
Q 048729          144 GVKTVGLAEVDVVNP-----ETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEI  218 (330)
Q Consensus       144 G~~~~g~te~~i~d~-----~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~  218 (330)
                      -...||+||+..+-.     +.+.+++.-     ++.+          +.   ... -....|++|||++++|++|++++
T Consensus       233 v~~~YG~TEt~~i~~~~~~~~~~~~~p~~-----~~~~----------~~---~~~-~g~~~~~~tgD~g~~d~~G~l~i  293 (386)
T TIGR02372       233 LLEVYGATETGGIGLREAPDDPFRLLPDL-----ACFA----------DT---LSS-AGLARRLDLQDRLAWDKDGGFTI  293 (386)
T ss_pred             hhheeccccccccccccCCCCCcccCCCc-----cccC----------CC---ccC-CCccceeecCceEEEcCCCcEEE
Confidence            245699998643211     011111110     0000          00   000 01123799999999999999999


Q ss_pred             EecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCC
Q 048729          219 KDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYM  298 (330)
Q Consensus       219 ~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~  298 (330)
                      .||.||+||+.|++|+|.+||+.+.++|+|.+++|...     ++++.++|++.++...  ....+++.++++++++.|+
T Consensus       294 ~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~~-----g~~~~a~vv~~~~~~~--~~~~~~l~~~~~~~L~~~~  366 (386)
T TIGR02372       294 LGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRLD-----GRRLKAFIVVAEDADE--AELEIELRATAARHLPAPA  366 (386)
T ss_pred             ecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEcC-----CceEEEEEEECCCCCh--HHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999998632     4578888888764321  0125689999999999999


Q ss_pred             CCceEEEccCCCCCCCCccc
Q 048729          299 VPRKVVFSEELPKTSTGKIQ  318 (330)
Q Consensus       299 ~p~~~~~v~~lP~t~~GKv~  318 (330)
                      +|..+.++++||+|++||++
T Consensus       367 ~P~~i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       367 RPDRFRFGTELPRTGAGKLA  386 (386)
T ss_pred             CCcEEEEcccCCCCCCCCcC
Confidence            99999999999999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.92  E-value=5.4e-23  Score=189.77  Aligned_cols=261  Identities=20%  Similarity=0.241  Sum_probs=181.3

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVP--SMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~--~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|..++......+++.+...|+++||+++...+...  ..+..+++.+..|+.+++++... .+.+...+++.++++++.
T Consensus        95 ~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~~  173 (422)
T TIGR02155        95 YTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIMV  173 (422)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEEE
Confidence            788888777777777787889999999988766542  22334577889999998887654 578889999999999999


Q ss_pred             cccchHHHHHHhcc-------Cc--------------hHHHHhhccCC---cccCce-----------------------
Q 048729          119 DHLHTYLLLEALSL-------FP--------------QRARLKARQGV---KTVGLA-----------------------  151 (330)
Q Consensus       119 ~~~~~~~~~~~~~~-------~~--------------~~~~~~~~~G~---~~~g~t-----------------------  151 (330)
                      .|..+..+......       ..              .........|.   ..||+|                       
T Consensus       174 ~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~  253 (422)
T TIGR02155       174 TPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVETQDGLHIWED  253 (422)
T ss_pred             cHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccccCCCceEecC
Confidence            99887665432210       00              00011111111   123333                       


Q ss_pred             --eEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecC-c-----eEEEEecCC
Q 048729          152 --EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHAD-G-----YVEIKDRSK  223 (330)
Q Consensus       152 --e~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~-G-----~l~~~GR~d  223 (330)
                        .++|+|+++|.+++++  +.|||++++..            ...+. .+||+|||+++++++ |     .+++.||.|
T Consensus       254 ~~~~eivd~~~g~~v~~G--e~Gelvvt~~~------------~~~~p-~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~  318 (422)
T TIGR02155       254 HFYPEIIDPHTGEVLPDG--EEGELVFTTLT------------KEALP-VIRYRTRDLTRLLPGTARTMRRMDRITGRSD  318 (422)
T ss_pred             eeEEEEECCCCCCCCCCC--CeeEEEEecCC------------ccccc-eeeEEcCcEEEEECCCCCcccccccccCccC
Confidence              3456776588888888  88999998732            12222 679999999999875 4     468999999


Q ss_pred             CeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCC-----CCCHHHHHHHHHhcCCCCC
Q 048729          224 DVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTK-----KPTEKEIIEYCRARLPRYM  298 (330)
Q Consensus       224 d~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~l~~~l~~~l~~~~  298 (330)
                      |++|++|.+|+|.+||+++.++|+|.....+........+.+.+.++...+.....     ....+++.+.+++++..+.
T Consensus       319 d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  398 (422)
T TIGR02155       319 DMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSM  398 (422)
T ss_pred             CeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhccCcEE
Confidence            99999999999999999999999998555555555444457777777665432100     0114677777877776653


Q ss_pred             CCceEEEccCCCCCCCCcccH
Q 048729          299 VPRKVVFSEELPKTSTGKIQK  319 (330)
Q Consensus       299 ~p~~~~~v~~lP~t~~GKv~r  319 (330)
                      . ..|+.+++||+|+ ||++|
T Consensus       399 ~-v~~~~~~~lp~~~-GK~~~  417 (422)
T TIGR02155       399 D-VHLVEPGSLPRSE-GKARR  417 (422)
T ss_pred             E-EEEECCCCccCCC-CCceE
Confidence            1 2344457999988 99986

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.91  E-value=6.8e-24  Score=188.41  Aligned_cols=116  Identities=23%  Similarity=0.259  Sum_probs=108.6

Q ss_pred             CCCeEEeCceEEE-ecCceEEEEecCCCeEEeCC---eecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecC
Q 048729          198 DNGWFYTGDIGVM-HADGYVEIKDRSKDVIISGG---ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKR  273 (330)
Q Consensus       198 ~~g~~~TGD~~~~-~~~G~l~~~GR~dd~ik~~G---~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  273 (330)
                      .+|||+|||+|++ |++|+++|.||.+     +|   ++|+|. ||++|.+||+|.+|+|++.+++.+++.++|+|++..
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~  280 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL  280 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence            3899999999998 6999999999998     78   799999 999999999999999999999999999999998764


Q ss_pred             CcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHh
Q 048729          274 DLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFA  326 (330)
Q Consensus       274 ~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~  326 (330)
                      .      .+.+++.++++++|+. ++|+++.++++||+|++||++|+.|++++
T Consensus       281 ~------~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~  326 (365)
T PRK09188        281 P------ADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIA  326 (365)
T ss_pred             C------CCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHh
Confidence            2      5678999999999999 99999999999999999999999999876

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.90  E-value=2.1e-22  Score=195.57  Aligned_cols=228  Identities=21%  Similarity=0.258  Sum_probs=194.0

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN   94 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~   94 (330)
                      .++.++|..++..+|+.+|+.+.+.++||+++...++++|+.|...|+.+++.|+++.+.++++++.++++++.|+..+|
T Consensus       227 ~~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP  306 (642)
T COG1020         227 LTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP  306 (642)
T ss_pred             chHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEec
Confidence            67999999999999999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEcccchH-------HH--HHH---h---c--------cCc-----------------
Q 048729           95 INTRLDAHTLSVLLQHSESKLVFVDHLHTY-------LL--LEA---L---S--------LFP-----------------  134 (330)
Q Consensus        95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~-------~~--~~~---~---~--------~~~-----------------  134 (330)
                      +++.++.+++..+++..+++.+++......       ..  ...   .   .        ...                 
T Consensus       307 ~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~  386 (642)
T COG1020         307 LDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPGLALDDALSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRI  386 (642)
T ss_pred             CCCCChHHHHHHHHhhcCccEEEeccccccccccCCccccccccccCCccCcccccCCCCCeEEEEEccCCCCCCCCcee
Confidence            999999999999999999999998733221       00  000   0   0        000                 


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       387 ~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~  466 (642)
T COG1020         387 EHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPL  466 (642)
T ss_pred             cCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHH
Confidence                                                                                            


Q ss_pred             ----------------------------------hHHHH----------------------------------hhccCCc
Q 048729          135 ----------------------------------QRARL----------------------------------KARQGVK  146 (330)
Q Consensus       135 ----------------------------------~~~~~----------------------------------~~~~G~~  146 (330)
                                                        .....                                  ..++|.|
T Consensus       467 ~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p  546 (642)
T COG1020         467 LLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRP  546 (642)
T ss_pred             HHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCccee
Confidence                                              00000                                  1245566


Q ss_pred             ccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCCeE
Q 048729          147 TVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVI  226 (330)
Q Consensus       147 ~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~i  226 (330)
                      +.+ +.+.++|. .++++|.+  ..||+++.|.++..||+++|+.+...|..+.+|+|||+++++.+|.+.++||.|+++
T Consensus       547 ~~n-~~~~ild~-~~~~~p~g--v~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qv  622 (642)
T COG1020         547 VAN-TQLYILDQ-GLRPLPLG--VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQV  622 (642)
T ss_pred             eCC-CeEEEECC-CCCcCCCC--CCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEecccccee
Confidence            666 36777775 78888888  789999999999999999999999999733499999999999999999999999999


Q ss_pred             EeCCeecCHHHHHHHHhcCc
Q 048729          227 ISGGENICSAEVESVLYSIT  246 (330)
Q Consensus       227 k~~G~~v~~~~iE~~l~~~~  246 (330)
                      |++|+++.+.+||..+.++|
T Consensus       623 ki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         623 KIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             EeceEecCcHHHHHHHhcCC
Confidence            99999999999999998775

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=1.6e-22  Score=196.11  Aligned_cols=126  Identities=29%  Similarity=0.369  Sum_probs=116.5

Q ss_pred             CeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCC
Q 048729          200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTK  279 (330)
Q Consensus       200 g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  279 (330)
                      .+|+|||+++..++|.+.+.||.|++||++|.|+.+.+|+..+..+|.|.++.+....+.+.++++.+|++.......  
T Consensus       454 r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~--  531 (1032)
T KOG1178|consen  454 RIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKS--  531 (1032)
T ss_pred             hcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCc--
Confidence            379999999999999999999999999999999999999999999999999999999998888999999998877653  


Q ss_pred             CCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          280 KPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       280 ~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                       .....++.++..+|+.|++|+.++.++++|.|++||+|+++|.+...+
T Consensus       532 -~~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~~~s~  579 (1032)
T KOG1178|consen  532 -VLIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLEYNSK  579 (1032)
T ss_pred             -hhHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhhhhhhhh
Confidence             447889999999999999999999999999999999999999985443

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.81  E-value=1.3e-17  Score=148.61  Aligned_cols=259  Identities=24%  Similarity=0.268  Sum_probs=184.6

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS--MYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~--~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|+.|+...+..+|+.|...|..+||+|..+..-+..  -+...+|+.++|+.++|+++... +....+++++++++|.+
T Consensus       110 ~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~-~~~~~l~~df~~tvI~~  188 (438)
T COG1541         110 YTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNT-ERQLELMKDFKPTVIAA  188 (438)
T ss_pred             cCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccH-HHHHHHHHhcCCcEEEE
Confidence            9999999999999999999999999999988874322  25667889999999999988444 56677999999999999


Q ss_pred             cccchHHHHHHhccCc---------------------hHHHHhhccC---CcccCceeE---------------------
Q 048729          119 DHLHTYLLLEALSLFP---------------------QRARLKARQG---VKTVGLAEV---------------------  153 (330)
Q Consensus       119 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~G---~~~~g~te~---------------------  153 (330)
                      +|++...+.+......                     .........|   ..+||.||.                     
T Consensus       189 tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~glhi~eD~~  268 (438)
T COG1541         189 TPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERNGLHIWEDHF  268 (438)
T ss_pred             ChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCcccccccccCCCcchhhc
Confidence            9999888776655442                     1222223333   345777763                     


Q ss_pred             --EEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecC----ce-----EEEEecC
Q 048729          154 --DVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHAD----GY-----VEIKDRS  222 (330)
Q Consensus       154 --~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~----G~-----l~~~GR~  222 (330)
                        .|+||++|+.++.+  +.|||+++.-.  .       .....    --|+|||++...++    |+     ..+.||.
T Consensus       269 ~~Ei~dP~t~e~l~dg--e~GelV~T~L~--~-------~~~Pl----IRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~  333 (438)
T COG1541         269 IFEIVDPETGEQLPDG--ERGELVITTLT--K-------EGMPL----IRYRTGDITVILSDPCGCGRTHRRIERIEGRS  333 (438)
T ss_pred             eeeeecCCcCccCCCC--CeeEEEEEecc--c-------cCcce----EEEEcCCeeEecccCCCCCCccccccccCccc
Confidence              66888899999999  78999998632  1       01111    14999999999763    32     5789999


Q ss_pred             CCeEEeCCeecCHHHHHHHHhcCcCcc-eEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC-CCC
Q 048729          223 KDVIISGGENICSAEVESVLYSITAVN-EAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY-MVP  300 (330)
Q Consensus       223 dd~ik~~G~~v~~~~iE~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p  300 (330)
                      ||++++.|.+|+|..||+.|.+.+.+. +-.++... ++..+.+.+-|++.++.. .. ....++.+.+...+... ...
T Consensus       334 dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L~V~vE~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~  410 (438)
T COG1541         334 DDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDELTVRVELENEAE-EL-EDERRLAKKLIKNIKSELGVR  410 (438)
T ss_pred             ccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceEEEEEEecCccc-ch-HHHHHHHHHHHHHHHhhcCCc
Confidence            999999999999999999999999999 33333333 444567888888876522 00 12222223443332222 222


Q ss_pred             c--eEEEccCCCCCCCCcccH
Q 048729          301 R--KVVFSEELPKTSTGKIQK  319 (330)
Q Consensus       301 ~--~~~~v~~lP~t~~GKv~r  319 (330)
                      .  .++.+.++|+|.. |..|
T Consensus       411 ~~v~~v~~g~l~r~~~-K~kr  430 (438)
T COG1541         411 VEVELVEPGELPRTEG-KAKR  430 (438)
T ss_pred             eEEEEEeccceecccC-ceeE
Confidence            2  4556679999954 6554

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.75  E-value=7.5e-16  Score=142.80  Aligned_cols=261  Identities=16%  Similarity=0.147  Sum_probs=164.1

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS--MYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~--~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|+.++...+...++.+...|+.++|+++++.+.+..  .....++++..|+.+++...   ......+++..+++.++.
T Consensus       106 ~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l~~  182 (445)
T TIGR03335       106 LTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGIVA  182 (445)
T ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEEEE
Confidence            8999999888888888888899999999999886643  34456788899998876553   234577899999999988


Q ss_pred             cccchHHHHHHhcc-------Cc--------------hHHHHhhccCCc---ccCcee---------------------E
Q 048729          119 DHLHTYLLLEALSL-------FP--------------QRARLKARQGVK---TVGLAE---------------------V  153 (330)
Q Consensus       119 ~~~~~~~~~~~~~~-------~~--------------~~~~~~~~~G~~---~~g~te---------------------~  153 (330)
                      .+.....+......       ..              .........|.+   .||+||                     +
T Consensus       183 ~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~~~c~~~~g~h~~~d~~~v  262 (445)
T TIGR03335       183 SVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMCGECQAVAGLHVPEDLVHL  262 (445)
T ss_pred             CHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhheEEecCCCCccccCCceEE
Confidence            87765444321110       00              111111122322   255544                     5


Q ss_pred             EEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEec-C----c----eEEEEecCCC
Q 048729          154 DVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHA-D----G----YVEIKDRSKD  224 (330)
Q Consensus       154 ~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~-~----G----~l~~~GR~dd  224 (330)
                      +|+|++++.+++.|  +.|||++++-.........     ..+    -|+|||++++.. +    |    .+...||.||
T Consensus       263 EIvDp~~~~~vp~G--e~GELvvT~L~~~~~r~~~-----Pli----RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd  331 (445)
T TIGR03335       263 DVYDPRHQRFLPDG--ECGRIVLTTLLKPGERCGS-----LLI----NYDTEDTTVVISRDRCPCGRTHMRILNPEREAE  331 (445)
T ss_pred             EEEcCCCCCCCcCC--CceEEEEEecCCCCccCCc-----eEE----EeecCceEEEecCCCCCCCCCcceeCCCcccCc
Confidence            67788677888888  8899999873210000000     111    389999998732 2    2    2455799999


Q ss_pred             eEEeCCeecCHHHHHHHHhcC---cCcceEE-EEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhc----CCC
Q 048729          225 VIISGGENICSAEVESVLYSI---TAVNEAA-VVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR----LPR  296 (330)
Q Consensus       225 ~ik~~G~~v~~~~iE~~l~~~---~~v~~~~-v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~----l~~  296 (330)
                      +++++|.+|+|.+||++|.++   +++...+ ++...++.....+.+.++..+...    ...+++.+.+...    ++.
T Consensus       332 ~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~  407 (445)
T TIGR03335       332 TIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRVSLECEDKDN----CSIHDIQENFTGTFLKYKPE  407 (445)
T ss_pred             eEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEEEEEecCccc----chHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999994   5554333 322222222335666666655533    2334444444443    222


Q ss_pred             -------CCCCceEEEc--cCCCCCC-CCcccH
Q 048729          297 -------YMVPRKVVFS--EELPKTS-TGKIQK  319 (330)
Q Consensus       297 -------~~~p~~~~~v--~~lP~t~-~GKv~r  319 (330)
                             ..+...+.++  .++|+++ .||..|
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r  440 (445)
T TIGR03335       408 LIGSYDEGIFQILVNFTGPGELELHKIKGRPKR  440 (445)
T ss_pred             hhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence                   1222233333  4899984 699876

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.51  E-value=1e-12  Score=125.79  Aligned_cols=108  Identities=14%  Similarity=0.222  Sum_probs=94.2

Q ss_pred             CHHHHHHHHHHhcCCCcEEEeCC-----eeecHHHHHHHHHHHHH-HHHHcCCCCCCEEEEECCCC--HHHHHHHHHhhh
Q 048729           16 TTLGFLERAAAAYTDCPSLVYNN-----TTYTWSETHRRCLQVAS-SLSSVGIQRGHVVSVVAPNV--PSMYELQFGVPM   87 (330)
Q Consensus        16 ~~~~~l~~~~~~~p~~~a~~~~~-----~~~T~~el~~~~~~~a~-~L~~~g~~~gd~V~~~~~~~--~~~~~~~la~~~   87 (330)
                      .+...++..-.+++...|.+.-+     ..+||..+..++.+.|+ .|.+-|+.++|+|.++...+  .++++..++|+.
T Consensus        95 d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l  174 (1363)
T KOG3628|consen   95 DIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFL  174 (1363)
T ss_pred             chHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccc
Confidence            56667777778888899988743     56999999999999999 66688999999999999877  899999999999


Q ss_pred             cCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch
Q 048729           88 SGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT  123 (330)
Q Consensus        88 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~  123 (330)
                      .|..++|+.+..+.+++...++....++++++..-.
T Consensus       175 ~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~  210 (1363)
T KOG3628|consen  175 LGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGE  210 (1363)
T ss_pred             cceeeccchhhhhhhhhhcccCCCccceEeehhhhH
Confidence            999999999988899999999999999988865433

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.45  E-value=5.6e-13  Score=112.17  Aligned_cols=92  Identities=13%  Similarity=0.078  Sum_probs=82.2

Q ss_pred             HHHHHHhcCCCcEEEeC------CeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           21 LERAAAAYTDCPSLVYN------NTTYTWSETHRRCLQVASSLSS-VGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        21 l~~~~~~~p~~~a~~~~------~~~~T~~el~~~~~~~a~~L~~-~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      +...++.+|+++|++..      ++++||+|+.+.++++|++|.+ .|+++||+|+++++|+++++.+++|++++|++++
T Consensus         2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v   81 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV   81 (227)
T ss_pred             hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence            56788899999999742      2369999999999999999997 7999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccchHH
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYL  125 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~  125 (330)
                      |++             ..+++++++++.+...
T Consensus        82 p~n-------------~s~a~~~v~~~~~~~~  100 (227)
T TIGR03089        82 LAG-------------DPDADVVVTGPDRLAA  100 (227)
T ss_pred             eCC-------------CCCCCEEEeCcchhhh
Confidence            995             6789999998876654

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=99.40  E-value=4.5e-13  Score=91.73  Aligned_cols=70  Identities=53%  Similarity=0.752  Sum_probs=61.4

Q ss_pred             HHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCC--ceEEEccC-CCCCC
Q 048729          237 EVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVP--RKVVFSEE-LPKTS  313 (330)
Q Consensus       237 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p--~~~~~v~~-lP~t~  313 (330)
                      +||+.+.+||+|.+++|++..++..++++++++++          +.++++++++++|+.|++|  ..++.+++ ||+|+
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~----------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~   70 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL----------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTP   70 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE----------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBET
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe----------eecccccchhhhCCCcceeeEEEEccccCcCCCCC
Confidence            69999999999999999999998888999999988          2399999999999999999  55666677 99999


Q ss_pred             CCc
Q 048729          314 TGK  316 (330)
Q Consensus       314 ~GK  316 (330)
                      +||
T Consensus        71 ~GK   73 (73)
T PF13193_consen   71 SGK   73 (73)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            998

...

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=98.53  E-value=1.6e-05  Score=72.96  Aligned_cols=194  Identities=12%  Similarity=0.147  Sum_probs=108.5

Q ss_pred             cCCCCCCEEEEEC-CCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhcc----Cc
Q 048729           60 VGIQRGHVVSVVA-PNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSL----FP  134 (330)
Q Consensus        60 ~g~~~gd~V~~~~-~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~----~~  134 (330)
                      .|+..|++++.+. .++ .+.-.   +......+...+..-+.+.....|++.+|+++++.|+.+..+......    ..
T Consensus       138 ~g~~~g~r~a~~~~~~~-~ly~~---~~~~~~~~~~~~l~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~~~  213 (430)
T TIGR02304       138 DGLFAKHRIAFFLRADN-NLYQS---VNNRWISLDFFDLLAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELTIK  213 (430)
T ss_pred             cccccCCcEEEEEccCh-hHHHH---HHhccceeeecCCCcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCCCC
Confidence            4888999999994 333 21111   222222133333335578899999999999999999988776653221    11


Q ss_pred             --------------hHHHHhhccCCcc---cCceeEEEeCCCCCcccCCCCceecEEEEecCccccc--ccCCch---hh
Q 048729          135 --------------QRARLKARQGVKT---VGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVG--YFKDKE---AT  192 (330)
Q Consensus       135 --------------~~~~~~~~~G~~~---~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~g--y~~~~~---~~  192 (330)
                                    .........|+++   ||.||..+ .    ..|+     .|.+++.-+.+..-  ++++..   ..
T Consensus       214 ~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tEg~l-a----~eC~-----~g~lHl~ed~~~vE~~ivD~~~~~~~V  283 (430)
T TIGR02304       214 PKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATEGFL-A----STCR-----CGTLHLNEDLVHIEKQYLDEHKRFVPI  283 (430)
T ss_pred             ceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCchhhe-E----EecC-----CCCEEEccccEEEEeeEECCCCceEEE
Confidence                          2223344556654   89987322 1    1111     12344443322111  221110   01


Q ss_pred             hccccCCC----eEEeCceEEEecC----ce----E-EEEecCCCeEEe---CC--eecCHHHHHHHH-hcCcCcceEEE
Q 048729          193 RRCISDNG----WFYTGDIGVMHAD----GY----V-EIKDRSKDVIIS---GG--ENICSAEVESVL-YSITAVNEAAV  253 (330)
Q Consensus       193 ~~~~~~~g----~~~TGD~~~~~~~----G~----l-~~~GR~dd~ik~---~G--~~v~~~~iE~~l-~~~~~v~~~~v  253 (330)
                      ...+...+    -|+|||++...++    |.    + .+.||.||++++   +|  ..++|..++..+ ...++|.+.-+
T Consensus       284 iT~L~n~~~PlIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi  363 (430)
T TIGR02304       284 ITDFTRTTQPIVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRV  363 (430)
T ss_pred             EecCCCccceEEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEE
Confidence            11111111    4999999887544    32    3 488999999985   44  445999998874 45788888766


Q ss_pred             EeecCCCCCceeEEEEEe
Q 048729          254 VARPDMFWGEIPCAFVSL  271 (330)
Q Consensus       254 ~~~~~~~~~~~~~~~v~~  271 (330)
                      +-..    .+.+.+.++.
T Consensus       364 ~Q~~----~~~l~v~~~~  377 (430)
T TIGR02304       364 LQTG----SAQLELIADC  377 (430)
T ss_pred             EEcc----CCeEEEEEEe
Confidence            6432    2245555554

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=97.93  E-value=1.8e-05  Score=56.87  Aligned_cols=88  Identities=19%  Similarity=0.195  Sum_probs=52.2

Q ss_pred             CeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccC---CCCCHHHHHHHHHhcCCCCCCCceEEEc
Q 048729          230 GENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELT---KKPTEKEIIEYCRARLPRYMVPRKVVFS  306 (330)
Q Consensus       230 G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~l~~~l~~~l~~~~~p~~~~~v  306 (330)
                      |.+|+|.+||+++.++|++...+.+........+.+.+.|++.++...+   .....+++.+.+++++.-. .-..++-.
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~-~~V~lv~~   79 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR-PEVELVPP   79 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-T
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce-EEEEEECC
Confidence            7899999999999999999955555555444567888888888864210   0012355555556655322 12234445


Q ss_pred             cCCCCCCCCcccH
Q 048729          307 EELPKTSTGKIQK  319 (330)
Q Consensus       307 ~~lP~t~~GKv~r  319 (330)
                      .+||++ .||..|
T Consensus        80 gtLpr~-~~K~~R   91 (96)
T PF14535_consen   80 GTLPRS-EGKAKR   91 (96)
T ss_dssp             T-S----SSSS-S
T ss_pred             CCccCC-CCcceE
Confidence            589998 678765

>PLN03051 acyl-activating enzyme; Provisional

Probab=97.25  E-value=0.00061  Score=64.53  Aligned_cols=50  Identities=16%  Similarity=0.305  Sum_probs=47.6

Q ss_pred             CCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 048729           72 APNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHL  121 (330)
Q Consensus        72 ~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~  121 (330)
                      +||++++++++|||+++|++++|+++.++++++.++++..+++++++++.
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~   50 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDV   50 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCc
Confidence            58999999999999999999999999999999999999999999998764

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=95.34  E-value=0.2  Score=46.04  Aligned_cols=95  Identities=11%  Similarity=0.034  Sum_probs=75.9

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHhhhcCcEEeecC
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV--PSMYELQFGVPMSGAILNNIN   96 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~--~~~~~~~la~~~~G~~~~~l~   96 (330)
                      .||.++-+. +.        -++|.-.+...+...+..+   |+...+|+++-.|..  ...++..+|++..|++.+...
T Consensus       232 ~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~---g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~  308 (596)
T KOG1177|consen  232 SPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARA---GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPA  308 (596)
T ss_pred             CCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHh---CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeC
Confidence            467766663 22        4589989988888877665   777777888877764  555788899999999999889


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEEcccchHH
Q 048729           97 TRLDAHTLSVLLQHSESKLVFVDHLHTYL  125 (330)
Q Consensus        97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~  125 (330)
                      +.+.+....+.+.+.+++.++.+|..+..
T Consensus       309 ~~f~~k~alqai~~ekcT~l~gtPtM~~D  337 (596)
T KOG1177|consen  309 PSFDPKDALQAISNEKCTTLYGTPTMFVD  337 (596)
T ss_pred             CCCChHHHHHHHHhhceEEEecChHHHHH
Confidence            99999999999999999999998865443

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=95.22  E-value=0.15  Score=48.57  Aligned_cols=88  Identities=16%  Similarity=0.185  Sum_probs=59.4

Q ss_pred             EEeCceEEEec--Cc--eEEEEecCCCeEEeCCeecCHHHHHHHHhcC-----cCcceEEEEeecCCCCCceeEEEEEec
Q 048729          202 FYTGDIGVMHA--DG--YVEIKDRSKDVIISGGENICSAEVESVLYSI-----TAVNEAAVVARPDMFWGEIPCAFVSLK  272 (330)
Q Consensus       202 ~~TGD~~~~~~--~G--~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~-----~~v~~~~v~~~~~~~~~~~~~~~v~~~  272 (330)
                      |+.||+++...  ++  .+.|+||.+.++.+.|++++-..|++++.+.     -.+.+-.+..........+.+.++++.
T Consensus       371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~  450 (528)
T PF03321_consen  371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELE  450 (528)
T ss_dssp             EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEEC
T ss_pred             eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeC
Confidence            89999999853  34  7999999999999999999999999998775     234455555542222234566777776


Q ss_pred             CCcccCCCCCHHHHHHHHHhcC
Q 048729          273 RDLELTKKPTEKEIIEYCRARL  294 (330)
Q Consensus       273 ~~~~~~~~~~~~~l~~~l~~~l  294 (330)
                      ...     .+.+++.+.+.+.|
T Consensus       451 ~~~-----~~~~~~~~~lD~~L  467 (528)
T PF03321_consen  451 GEP-----DDLEELAKALDESL  467 (528)
T ss_dssp             S-H-----HHHHHHHHHHHHCS
T ss_pred             CCc-----hHHHHHHHHHHHHh
Confidence            662     34567777777776

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=95.15  E-value=0.19  Score=42.28  Aligned_cols=55  Identities=16%  Similarity=0.181  Sum_probs=46.4

Q ss_pred             HHcCCCCCCEEEEECCCCH--HHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCc
Q 048729           58 SSVGIQRGHVVSVVAPNVP--SMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESK  114 (330)
Q Consensus        58 ~~~g~~~gd~V~~~~~~~~--~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~  114 (330)
                      ...|++++|++. .+|...  .+...+++++..|+..+.+ ++++++.+.+.+++.+++
T Consensus       171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERVT  227 (227)
T ss_pred             hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcCC
Confidence            556889999999 999875  3455789999999998877 589999999999998874

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=94.51  E-value=3.6  Score=37.30  Aligned_cols=65  Identities=29%  Similarity=0.447  Sum_probs=44.9

Q ss_pred             EEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecC--------ceEEEEecCCC
Q 048729          153 VDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHAD--------GYVEIKDRSKD  224 (330)
Q Consensus       153 ~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~--------G~l~~~GR~dd  224 (330)
                      +.+.|+.|..+++.|  +.|-|-+-++... .|             .+...|.|+|....+        ..+.++||.+.
T Consensus       287 V~iRDp~tl~~~~~G--e~Gli~vidl~~~-s~-------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  287 VIIRDPETLEPLPPG--ETGLIQVIDLANT-SY-------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             EEEECCCCCcCCCCC--CeeEEEEEccccc-CC-------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence            355677788888887  7788877654211 11             456889999987654        27999999974


Q ss_pred             eEEeCCeecC
Q 048729          225 VIISGGENIC  234 (330)
Q Consensus       225 ~ik~~G~~v~  234 (330)
                       -.++|....
T Consensus       351 -ae~RGCs~~  359 (365)
T PF04443_consen  351 -AEIRGCSLT  359 (365)
T ss_pred             -CccCCcHHH
Confidence             346676553

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=94.46  E-value=0.43  Score=45.12  Aligned_cols=82  Identities=18%  Similarity=0.179  Sum_probs=63.3

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|+..+.........   ..+++++|++....|....+ +...++++..|+.++..+.. +++.+...+++.+++.+++.
T Consensus       187 ~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~l~~~  262 (521)
T PRK06187        187 LSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF-DPENLLDLIETERVTFFFAV  262 (521)
T ss_pred             eehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC-CHHHHHHHHHHhCCeEEEch
Confidence            788888766666555   45889999999999877544 34445688999998776654 88999999999999999987


Q ss_pred             ccchHHH
Q 048729          120 HLHTYLL  126 (330)
Q Consensus       120 ~~~~~~~  126 (330)
                      |.++..+
T Consensus       263 p~~~~~l  269 (521)
T PRK06187        263 PTIWQML  269 (521)
T ss_pred             HHHHHHH
Confidence            7655433

>PRK06164 acyl-CoA synthetase; Validated

Probab=94.14  E-value=0.54  Score=44.90  Aligned_cols=93  Identities=17%  Similarity=0.177  Sum_probs=68.4

Q ss_pred             CCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCC
Q 048729           29 TDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTR   98 (330)
Q Consensus        29 p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~   98 (330)
                      ++.++++. ++        -.+|++.+...+..++..   .++.++|+++.++|.+..+ +..+++.+..|+.++..+ .
T Consensus       180 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~  255 (540)
T PRK06164        180 PDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARA---YGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEP-V  255 (540)
T ss_pred             CCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHh---cCCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecC-C
Confidence            56677775 32        237888887666555544   4788999999999987443 456788889999887654 5


Q ss_pred             CCHHHHHHHHHhcCCcEEEEcccchHH
Q 048729           99 LDAHTLSVLLQHSESKLVFVDHLHTYL  125 (330)
Q Consensus        99 ~~~~~l~~~l~~~~~~~i~~~~~~~~~  125 (330)
                      +.+..+...+++.++++++..|..+..
T Consensus       256 ~~~~~~~~~l~~~~~t~~~~~p~~l~~  282 (540)
T PRK06164        256 FDAARTARALRRHRVTHTFGNDEMLRR  282 (540)
T ss_pred             CCHHHHHHHHHHhCCeeecCCHHHHHH
Confidence            678889999999999999887765543

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=94.11  E-value=0.62  Score=44.10  Aligned_cols=79  Identities=10%  Similarity=-0.069  Sum_probs=61.2

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|++.+...+......   .+++++|++...+|.++.+ +..+++++..|+..+..+ ...++.+...+++.+++++...
T Consensus       181 ~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~  256 (515)
T TIGR03098       181 LSHRNLVAGAQSVATY---LENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHD-YLLPRDVLKALEKHGITGLAAV  256 (515)
T ss_pred             EecHHHHHHHHHHHHH---hCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcC-CCCHHHHHHHHHHcCCceEecC
Confidence            7888887666655544   4678999999999987654 445678889999887554 5678899999999999988887


Q ss_pred             ccch
Q 048729          120 HLHT  123 (330)
Q Consensus       120 ~~~~  123 (330)
                      |.++
T Consensus       257 P~~~  260 (515)
T TIGR03098       257 PPLW  260 (515)
T ss_pred             hHHH
Confidence            7544

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=94.11  E-value=0.61  Score=44.67  Aligned_cols=95  Identities=6%  Similarity=-0.001  Sum_probs=67.3

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecC
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNIN   96 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~   96 (330)
                      .|+.+|++. ++        -.+|++.+...+....   ...+++++|+++.++|....+  ...++..+..|+.++...
T Consensus       181 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~  257 (539)
T PRK06334        181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACL---KFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAY  257 (539)
T ss_pred             CcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEec
Confidence            456667664 32        2388888865544433   345788999999999865433  334577778898877665


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEEcccchHH
Q 048729           97 TRLDAHTLSVLLQHSESKLVFVDHLHTYL  125 (330)
Q Consensus        97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~  125 (330)
                      ....++.+...+++.+++.+...|.++..
T Consensus       258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~  286 (539)
T PRK06334        258 NPLYPKKIVEMIDEAKVTFLGSTPVFFDY  286 (539)
T ss_pred             CCCCHHHHHHHHHHhCCcEEEecHHHHHH
Confidence            56788999999999999999888765543

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=93.82  E-value=0.39  Score=45.40  Aligned_cols=80  Identities=13%  Similarity=0.055  Sum_probs=61.5

Q ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEE
Q 048729           40 TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS--MYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        40 ~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~--~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~  117 (330)
                      .+|++.+...+..+..   ..+++++|+++...|....  +...+++++..|+.+++. +..+++.+...+++.++++++
T Consensus       185 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~  260 (513)
T PRK07656        185 MLTHRQLLSNAADWAE---YLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL-PVFDPDEVFRLIETERITVLP  260 (513)
T ss_pred             EEecHHHHHHHHHHHH---hhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-CcCCHHHHHHHHHHhCCeEEe
Confidence            3888888766655443   4488999999999887644  355678999999988765 457889999999999999988


Q ss_pred             Ecccch
Q 048729          118 VDHLHT  123 (330)
Q Consensus       118 ~~~~~~  123 (330)
                      ..|.++
T Consensus       261 ~~p~~~  266 (513)
T PRK07656        261 GPPTMY  266 (513)
T ss_pred             chHHHH
Confidence            876544

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=93.59  E-value=0.71  Score=44.50  Aligned_cols=82  Identities=9%  Similarity=-0.044  Sum_probs=61.3

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|++.+...+..   .....+++++|++....+....+  ...+++.+..|+..+......+++.+...+++.++++++.
T Consensus       225 ~s~~~l~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~  301 (570)
T PRK04319        225 HVHNAMLQHYQT---GKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYT  301 (570)
T ss_pred             EecHHHHHHHHH---HHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEe
Confidence            778777544333   33356888999988887766443  4557888899998887777788999999999999999888


Q ss_pred             cccchHH
Q 048729          119 DHLHTYL  125 (330)
Q Consensus       119 ~~~~~~~  125 (330)
                      .|..+..
T Consensus       302 ~P~~~~~  308 (570)
T PRK04319        302 APTAIRM  308 (570)
T ss_pred             CHHHHHH
Confidence            7765543

>PRK08315 AMP-binding domain protein; Validated

Probab=93.59  E-value=0.8  Score=43.92  Aligned_cols=81  Identities=9%  Similarity=0.048  Sum_probs=61.3

Q ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEE
Q 048729           40 TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVP--SMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        40 ~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~--~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~  117 (330)
                      .+|+..+...+..+..   ..+++++|++....|...  .++..+++.+..|+..+......++..+...+++.+++.++
T Consensus       218 ~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~  294 (559)
T PRK08315        218 TLTHRNILNNGYFIGE---AMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALY  294 (559)
T ss_pred             EeeHHHHHHHHHHHHH---hcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEe
Confidence            3788877655554443   458899999999888753  44556788889999887666677888899999999999988


Q ss_pred             Ecccch
Q 048729          118 VDHLHT  123 (330)
Q Consensus       118 ~~~~~~  123 (330)
                      ..|..+
T Consensus       295 ~~P~~~  300 (559)
T PRK08315        295 GVPTMF  300 (559)
T ss_pred             cchHHH
Confidence            766543

>PRK12583 acyl-CoA synthetase; Provisional

Probab=93.57  E-value=0.91  Score=43.51  Aligned_cols=81  Identities=17%  Similarity=0.133  Sum_probs=61.3

Q ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEE
Q 048729           40 TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVP--SMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        40 ~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~--~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~  117 (330)
                      .+|++.+...+..+...   .+++++|++....|...  ..+..+++++..|+.++.....+++..+...+++.+++.++
T Consensus       220 ~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~  296 (558)
T PRK12583        220 TLSHHNILNNGYFVAES---LGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALY  296 (558)
T ss_pred             EeeHHHHHHHHHHHHHH---hCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEe
Confidence            38888886555554443   58899999999888653  44566788888999887555567888888999999999988


Q ss_pred             Ecccch
Q 048729          118 VDHLHT  123 (330)
Q Consensus       118 ~~~~~~  123 (330)
                      ..|.++
T Consensus       297 ~~P~~~  302 (558)
T PRK12583        297 GVPTMF  302 (558)
T ss_pred             ccHHHH
Confidence            877553

>PLN02736 long-chain acyl-CoA synthetase

Probab=92.55  E-value=0.99  Score=44.38  Aligned_cols=95  Identities=11%  Similarity=-0.050  Sum_probs=69.3

Q ss_pred             cCCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCC
Q 048729           28 YTDCPSLV-YNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINT   97 (330)
Q Consensus        28 ~p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~   97 (330)
                      .|+.+|++ +++        -.+|++.+...+..+..   ..++.++|+++.++|.++.+ ...+++++..|+..+..+.
T Consensus       219 ~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~---~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~  295 (651)
T PLN02736        219 KPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSL---STKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQG  295 (651)
T ss_pred             CccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHh---ccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCC
Confidence            35666665 332        12899888766665553   45788999999999987544 3345667788988765543


Q ss_pred             CCCHHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729           98 RLDAHTLSVLLQHSESKLVFVDHLHTYLLL  127 (330)
Q Consensus        98 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~  127 (330)
                        .+..+...+++.++++++..|.++..+.
T Consensus       296 --~~~~~~~~i~~~~~t~~~~vP~~~~~l~  323 (651)
T PLN02736        296 --DNLKLMDDLAALRPTIFCSVPRLYNRIY  323 (651)
T ss_pred             --CHHHHHHHHHHhCCcEEecchHHHHHHH
Confidence              5678999999999999999998876553

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=92.44  E-value=1.5  Score=41.92  Aligned_cols=92  Identities=13%  Similarity=-0.021  Sum_probs=65.5

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHhhhcCcEEeecC
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS--MYELQFGVPMSGAILNNIN   96 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~--~~~~~la~~~~G~~~~~l~   96 (330)
                      .++.+|++- +.        -.+|++.+...+.....+   .+++++|++....|....  ++..+++.+..|+..+..+
T Consensus       188 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~  264 (546)
T PRK08314        188 GPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLW---SNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMP  264 (546)
T ss_pred             CCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHh---hCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecC
Confidence            356676663 22        237888887665554443   467899999999887644  3556778899999888765


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEEcccch
Q 048729           97 TRLDAHTLSVLLQHSESKLVFVDHLHT  123 (330)
Q Consensus        97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~  123 (330)
                       ..++..+...+++.+++.+...|...
T Consensus       265 -~~~~~~~~~~i~~~~~t~~~~~p~~~  290 (546)
T PRK08314        265 -RWDREAAARLIERYRVTHWTNIPTMV  290 (546)
T ss_pred             -CCCHHHHHHHHHHhcCceecccHHHH
Confidence             46778888888889888887766443

>PRK07638 acyl-CoA synthetase; Validated

Probab=92.35  E-value=1.7  Score=40.87  Aligned_cols=82  Identities=9%  Similarity=-0.004  Sum_probs=61.1

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|.+.+...+....   ...+++++|++....+..+.+ +...+..+..|+..+.. +..++..+...+++.+++++...
T Consensus       163 ~s~~~~~~~~~~~~---~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~  238 (487)
T PRK07638        163 RAQQSWLHSFDCNV---HDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLM-RKFIPNQVLDKLETENISVMYTV  238 (487)
T ss_pred             EecHHHHHHHHHHH---HhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEc-CCCCHHHHHHHHHHcCCeEEEeC
Confidence            77777755554433   355788999999888876543 45567778889988755 56788999999999999999988


Q ss_pred             ccchHHH
Q 048729          120 HLHTYLL  126 (330)
Q Consensus       120 ~~~~~~~  126 (330)
                      |..+..+
T Consensus       239 P~~~~~l  245 (487)
T PRK07638        239 PTMLESL  245 (487)
T ss_pred             cHHHHHH
Confidence            7665443

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=92.27  E-value=0.98  Score=41.40  Aligned_cols=96  Identities=17%  Similarity=0.138  Sum_probs=70.2

Q ss_pred             cCCCcEEEe-C-C-------eeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeec
Q 048729           28 YTDCPSLVY-N-N-------TTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNI   95 (330)
Q Consensus        28 ~p~~~a~~~-~-~-------~~~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l   95 (330)
                      .|+.++++. + |       -.+|++.+...+..+.  +. ..+++  |+++.++|.+..+  +..+++++..|+..+..
T Consensus       153 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~  228 (417)
T PF00501_consen  153 SPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLP  228 (417)
T ss_dssp             TTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEE
T ss_pred             CccceeEeeccccccccccccccccccccccccccc--cccccccC--ceEEeecccccccccccccccccccccccccc
Confidence            568888875 1 2       2389999988888776  33 23333  6888888877444  37789999999999888


Q ss_pred             CCCCC--HHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729           96 NTRLD--AHTLSVLLQHSESKLVFVDHLHTYLLL  127 (330)
Q Consensus        96 ~~~~~--~~~l~~~l~~~~~~~i~~~~~~~~~~~  127 (330)
                      +....  ++.+...+++.+++.+++.|..+..+.
T Consensus       229 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~  262 (417)
T PF00501_consen  229 SPFDLFDPESLLELISRYKPTILFAVPSMLEALL  262 (417)
T ss_dssp             SSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHH
T ss_pred             ccccccccccchhccccccccccccccccccccc
Confidence            86543  567889999999999999887766554

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=92.24  E-value=1.2  Score=40.58  Aligned_cols=96  Identities=19%  Similarity=0.100  Sum_probs=70.4

Q ss_pred             CCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCC
Q 048729           29 TDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTR   98 (330)
Q Consensus        29 p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~   98 (330)
                      ++.++++. +.        -.+|++.+...+..+..   ..+++++|++....|.+..+ +..++..+..|+..+..+..
T Consensus       119 ~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~  195 (408)
T TIGR01733       119 PDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLAR---RYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPED  195 (408)
T ss_pred             CCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHH---hcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChh
Confidence            56666663 22        23788888777666665   45778999999998887554 55668888889888777654


Q ss_pred             CC--HHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729           99 LD--AHTLSVLLQHSESKLVFVDHLHTYLLL  127 (330)
Q Consensus        99 ~~--~~~l~~~l~~~~~~~i~~~~~~~~~~~  127 (330)
                      ..  +..+..++++.+++.+++.|..+..+.
T Consensus       196 ~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~  226 (408)
T TIGR01733       196 EERDAALLAALIAEHPVTVLNLTPSLLALLA  226 (408)
T ss_pred             hccCHHHHHHHHHHcCceEEEeCHHHHHHHH
Confidence            44  788999999999999998887665443

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=92.23  E-value=1.5  Score=42.28  Aligned_cols=95  Identities=17%  Similarity=0.094  Sum_probs=67.2

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCC
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINT   97 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~   97 (330)
                      .++.++++. ++        -.+|++.+...+....   ...++.++|+++.+.|.++.+ +...++.+..|+..+.. +
T Consensus       170 ~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~-~  245 (563)
T PLN02860        170 APDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLL-P  245 (563)
T ss_pred             CCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHH---hhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEec-C
Confidence            356666553 32        1377777754443333   345889999999999976543 34567888889987755 4


Q ss_pred             CCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729           98 RLDAHTLSVLLQHSESKLVFVDHLHTYLL  126 (330)
Q Consensus        98 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~  126 (330)
                      .+.+..+...+++.+++.+...|.++..+
T Consensus       246 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l  274 (563)
T PLN02860        246 KFDAKAALQAIKQHNVTSMITVPAMMADL  274 (563)
T ss_pred             CCCHHHHHHHHHHhCCeeEEeChHHHHHH
Confidence            57888999999999999999888765443

>PRK05852 acyl-CoA synthetase; Validated

Probab=92.06  E-value=2.7  Score=40.13  Aligned_cols=83  Identities=12%  Similarity=0.081  Sum_probs=60.0

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHhhhcCcEEee-cCCCCCHHHHHHHHHhcCCcEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS--MYELQFGVPMSGAILNN-INTRLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~--~~~~~la~~~~G~~~~~-l~~~~~~~~l~~~l~~~~~~~i~  117 (330)
                      +|++.+...+..+..   ..+++++|++..+.|....  ++..+++++..|+..+. -...+++..+...+++.+++.++
T Consensus       196 ~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~  272 (534)
T PRK05852        196 WTHANIASSVRAIIT---GYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYT  272 (534)
T ss_pred             ecHHHHHHHHHHHHH---HhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEE
Confidence            788888766655554   3478899999999987754  45567788888776553 23456788888899999999888


Q ss_pred             EcccchHHH
Q 048729          118 VDHLHTYLL  126 (330)
Q Consensus       118 ~~~~~~~~~  126 (330)
                      ..|..+..+
T Consensus       273 ~~P~~~~~l  281 (534)
T PRK05852        273 AVPTIHQIL  281 (534)
T ss_pred             cChHHHHHH
Confidence            777655433

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=91.94  E-value=1.7  Score=40.77  Aligned_cols=82  Identities=15%  Similarity=0.165  Sum_probs=60.6

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|+..+...+....   ...+++++|+++...|....+ +..+++.+..|+..+..+ ..++..+...+++.+++.+...
T Consensus       161 ~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~  236 (483)
T PRK03640        161 QTYGNHWWSAVGSA---LNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVE-KFDAEKINKLLQTGGVTIISVV  236 (483)
T ss_pred             EecHHHHHHHHHHH---HhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHhCCcEEEeH
Confidence            77777654433332   346889999999999876443 444677788899987665 5778999999999999999988


Q ss_pred             ccchHHH
Q 048729          120 HLHTYLL  126 (330)
Q Consensus       120 ~~~~~~~  126 (330)
                      |.++..+
T Consensus       237 P~~~~~l  243 (483)
T PRK03640        237 STMLQRL  243 (483)
T ss_pred             HHHHHHH
Confidence            8765443

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=91.52  E-value=0.84  Score=42.12  Aligned_cols=80  Identities=10%  Similarity=0.088  Sum_probs=60.4

Q ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           40 TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        40 ~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      .+|++.+...+..+...   .+++++|+++...|....+ +..+++++..|+..+..+..   +.+...+++.+++.+..
T Consensus       130 ~~s~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~~~  203 (436)
T TIGR01923       130 PHTFRNHYASAVGSKEN---LGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHISL  203 (436)
T ss_pred             EEehHHHHHHHHHHHhh---cCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEEEe
Confidence            38998887776666654   4889999999988876433 34568888999998877643   38888899999999988


Q ss_pred             cccchHH
Q 048729          119 DHLHTYL  125 (330)
Q Consensus       119 ~~~~~~~  125 (330)
                      .|.++..
T Consensus       204 ~P~~l~~  210 (436)
T TIGR01923       204 VPTQLNR  210 (436)
T ss_pred             HHHHHHH
Confidence            7765543

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PLN03052 acetate--CoA ligase; Provisional

Probab=91.07  E-value=1.8  Score=43.30  Aligned_cols=81  Identities=16%  Similarity=0.100  Sum_probs=55.5

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|.+.+..   .+.......+++++|++....+.+... ...+++.+..|+..+..+.......+.+++++.+++++.+.
T Consensus       376 ~sh~~~l~---~~~~~~~~~~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~  452 (728)
T PLN03052        376 WTQLTPLR---AAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTV  452 (728)
T ss_pred             ECchHHHH---HHHHHHHhcCCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEEC
Confidence            56654432   222233346899999998887776543 33456889999999877654445568888899999888877


Q ss_pred             ccchH
Q 048729          120 HLHTY  124 (330)
Q Consensus       120 ~~~~~  124 (330)
                      |.++.
T Consensus       453 Pt~l~  457 (728)
T PLN03052        453 PSIVK  457 (728)
T ss_pred             HHHHH
Confidence            65543

>PRK08308 acyl-CoA synthetase; Validated

Probab=91.06  E-value=3.1  Score=38.21  Aligned_cols=81  Identities=12%  Similarity=0.140  Sum_probs=60.6

Q ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEE
Q 048729           40 TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        40 ~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~  117 (330)
                      .+|++.+...+..+..   ..++.++|++...+|.++.+  +..++..+..|+..+..+ ..++..+...+++.++++++
T Consensus       120 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~~  195 (414)
T PRK08308        120 RRSWTEIDREIEAYNE---ALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT-NKNPKFALNILRNTPQHILY  195 (414)
T ss_pred             EEehHhHHHHHHHHHH---hhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC-CCCHHHHHHHHHHhCCeEEE
Confidence            3888888765555544   34678899999998877544  456788889999887665 45678888899999999888


Q ss_pred             EcccchH
Q 048729          118 VDHLHTY  124 (330)
Q Consensus       118 ~~~~~~~  124 (330)
                      ..|..+.
T Consensus       196 ~~P~~~~  202 (414)
T PRK08308        196 AVPLMLH  202 (414)
T ss_pred             cCHHHHH
Confidence            8775543

>PLN02614 long-chain acyl-CoA synthetase

Probab=91.03  E-value=1.7  Score=42.85  Aligned_cols=85  Identities=11%  Similarity=-0.067  Sum_probs=62.5

Q ss_pred             ecHHHHHHHHHHHHHHHH--HcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEE
Q 048729           41 YTWSETHRRCLQVASSLS--SVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~--~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~  117 (330)
                      +|++.+...+..+...+.  ..++.++|+++.++|.++.+ ....+.++..|+.++..+  .++..+...+++.+|++++
T Consensus       243 lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~  320 (666)
T PLN02614        243 ISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWR--GDVKLLIEDLGELKPTIFC  320 (666)
T ss_pred             EecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCeEEE
Confidence            898888776665554432  23678999999999987433 223455667888876553  3678999999999999999


Q ss_pred             EcccchHHHH
Q 048729          118 VDHLHTYLLL  127 (330)
Q Consensus       118 ~~~~~~~~~~  127 (330)
                      ..|.++..+.
T Consensus       321 ~vP~~~~~l~  330 (666)
T PLN02614        321 AVPRVLDRVY  330 (666)
T ss_pred             ecHHHHHHHH
Confidence            9998887654

>PRK06188 acyl-CoA synthetase; Validated

Probab=90.99  E-value=1.7  Score=41.28  Aligned_cols=79  Identities=6%  Similarity=-0.028  Sum_probs=60.4

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDH  120 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~  120 (330)
                      +|+..+...+....   ...++..+|++....|.+..+...+++.+..|+..+..+ ...+..+.+.+++.++++++..|
T Consensus       188 ~s~~~l~~~~~~~~---~~~~~~~~~~~l~~~pl~~~~g~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P  263 (524)
T PRK06188        188 GTHRSIATMAQIQL---AEWEWPADPRFLMCTPLSHAGGAFFLPTLLRGGTVIVLA-KFDPAEVLRAIEEQRITATFLVP  263 (524)
T ss_pred             eehHHHHHHHHHHH---hhcCCCcCcEEEEecCchhhhhHHHHHHHHcCCEEEEcC-CCCHHHHHHHHHHhCCEEEEehH
Confidence            77777765544333   356888999999999988766666678888899887665 46788899999999999988776


Q ss_pred             cch
Q 048729          121 LHT  123 (330)
Q Consensus       121 ~~~  123 (330)
                      ..+
T Consensus       264 ~~l  266 (524)
T PRK06188        264 TMI  266 (524)
T ss_pred             HHH
Confidence            544

>PLN02246 4-coumarate--CoA ligase

Probab=90.77  E-value=2.2  Score=40.79  Aligned_cols=95  Identities=12%  Similarity=0.025  Sum_probs=65.8

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeec
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNI   95 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l   95 (330)
                      .|+.++++. ++        -.+|++.+...+........ ..++.++|++....|..+.+  ...+++.+..|+.++..
T Consensus       177 ~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~  256 (537)
T PLN02246        177 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIM  256 (537)
T ss_pred             CccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEe
Confidence            356666653 22        23788887665554433322 46789999999999876544  34567888999999877


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcccch
Q 048729           96 NTRLDAHTLSVLLQHSESKLVFVDHLHT  123 (330)
Q Consensus        96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~  123 (330)
                      + ...++.+...+++.+++.+...|..+
T Consensus       257 ~-~~~~~~~~~~i~~~~~t~~~~~p~~~  283 (537)
T PLN02246        257 P-KFEIGALLELIQRHKVTIAPFVPPIV  283 (537)
T ss_pred             C-CCCHHHHHHHHHHhCceEEEcchHHH
Confidence            5 46778888899999998887766543

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=90.72  E-value=2.5  Score=40.56  Aligned_cols=99  Identities=13%  Similarity=0.077  Sum_probs=75.4

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecC
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNIN   96 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~   96 (330)
                      .|+.+|++- ++        -.+|++.+...+..+...+... +++.|+++..+|..+.+  ...+++.+..|+..+...
T Consensus       169 ~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~-~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~  247 (534)
T COG0318         169 DPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGG-LTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLS  247 (534)
T ss_pred             CCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhccc-CCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCC
Confidence            366777663 33        2389999988877777665321 78999999999987554  556778789999887776


Q ss_pred             C-CCCHHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729           97 T-RLDAHTLSVLLQHSESKLVFVDHLHTYLLL  127 (330)
Q Consensus        97 ~-~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~  127 (330)
                      + .+.++.+...+.+.+++.+...|.++..+.
T Consensus       248 ~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll  279 (534)
T COG0318         248 PEPFDPEEVLWLIEKYKVTVLSGVPTFLRELL  279 (534)
T ss_pred             CCCcCHHHHHHHHHHhcceEEecchHHHHHHH
Confidence            5 789999999999999999998888776654

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=90.66  E-value=3.5  Score=39.50  Aligned_cols=79  Identities=13%  Similarity=0.068  Sum_probs=59.2

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS--MYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~--~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|+..+...+....   ...+++++|++....|.+..  ++..+++.+..|+.++..+ ...++.+...+++.+++.++.
T Consensus       217 ~s~~~l~~~~~~~~---~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~vt~~~~  292 (547)
T PRK13295        217 HTANTLMANIVPYA---ERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQD-IWDPARAAELIRTEGVTFTMA  292 (547)
T ss_pred             eccHHHHHHHHHHH---HHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCC-CCCHHHHHHHHHHcCCcEEEe
Confidence            78877765554433   45688999999999998744  4556788889999987554 567889999999999998877


Q ss_pred             cccch
Q 048729          119 DHLHT  123 (330)
Q Consensus       119 ~~~~~  123 (330)
                      .+.++
T Consensus       293 ~p~~~  297 (547)
T PRK13295        293 STPFL  297 (547)
T ss_pred             cHHHH
Confidence            65544

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=90.55  E-value=2.3  Score=45.50  Aligned_cols=81  Identities=12%  Similarity=-0.018  Sum_probs=60.6

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCC--CCCHHHHHHHHHhcCCcEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINT--RLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~--~~~~~~l~~~l~~~~~~~i~  117 (330)
                      +|.+.+...+....   ...+++++|+++...|.+++. +..++..+..|+..+..++  ...+..+...+++.+++++.
T Consensus       618 ~~h~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~  694 (1296)
T PRK10252        618 VGQTAIVNRLLWMQ---NHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTH  694 (1296)
T ss_pred             eccHHHHHHHHHHH---HhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEE
Confidence            78877755444333   356899999999999998776 3456778888998887654  45678889999999999888


Q ss_pred             EcccchH
Q 048729          118 VDHLHTY  124 (330)
Q Consensus       118 ~~~~~~~  124 (330)
                      ..|..+.
T Consensus       695 ~~Ps~l~  701 (1296)
T PRK10252        695 FVPSMLA  701 (1296)
T ss_pred             eCHHHHH
Confidence            7776543

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=90.35  E-value=3.2  Score=40.03  Aligned_cols=83  Identities=16%  Similarity=0.180  Sum_probs=60.1

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|++.+...+..+. .....++.++|++...+|..+.+ +...++.+..|+..+......+++.+...+++.+++.++..
T Consensus       201 ~s~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~  279 (576)
T PRK05620        201 YSHRSLYLQSLSLR-TTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGV  279 (576)
T ss_pred             EEcHHHHHHHHHhh-hhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeec
Confidence            77777754333221 12245788999999999987654 34457778889988766667788999999999999999887


Q ss_pred             ccchH
Q 048729          120 HLHTY  124 (330)
Q Consensus       120 ~~~~~  124 (330)
                      |..+.
T Consensus       280 P~~~~  284 (576)
T PRK05620        280 PTLWI  284 (576)
T ss_pred             CHHHH
Confidence            76543

>PRK08316 acyl-CoA synthetase; Validated

Probab=90.16  E-value=3.6  Score=38.96  Aligned_cols=80  Identities=9%  Similarity=-0.055  Sum_probs=59.9

Q ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEE
Q 048729           40 TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        40 ~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~  117 (330)
                      .+|+..+...   ++......+++++|++....|....+  ...+++++..|+..++.+ ...++.+...+++.++++++
T Consensus       190 ~~s~~~l~~~---~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~  265 (523)
T PRK08316        190 MLTHRALIAE---YVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILD-APDPELILRTIEAERITSFF  265 (523)
T ss_pred             EEecHHHHHH---HHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEec-CCCHHHHHHHHHHhCCeEEE
Confidence            3888887544   33444456899999999998876543  344567788899988765 45788999999999999998


Q ss_pred             Ecccch
Q 048729          118 VDHLHT  123 (330)
Q Consensus       118 ~~~~~~  123 (330)
                      +.|.++
T Consensus       266 ~~P~~~  271 (523)
T PRK08316        266 APPTVW  271 (523)
T ss_pred             eCHHHH
Confidence            877654

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=90.15  E-value=3  Score=39.45  Aligned_cols=81  Identities=15%  Similarity=-0.013  Sum_probs=60.3

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|++.+...+....  ....+++++|++....|..+.+  ...+++.+..|+.++..+...++..+...+++.+++++..
T Consensus       181 ~s~~~~~~~~~~~~--~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~  258 (508)
T TIGR02262       181 HTHSNPYWTAELYA--RNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYG  258 (508)
T ss_pred             EechhHHHHHHHHh--HHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEec
Confidence            77877765543322  2345889999999998887654  3455677888998887777778888999999999998888


Q ss_pred             cccch
Q 048729          119 DHLHT  123 (330)
Q Consensus       119 ~~~~~  123 (330)
                      .|..+
T Consensus       259 ~P~~~  263 (508)
T TIGR02262       259 VPTLY  263 (508)
T ss_pred             chHHH
Confidence            77543

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=90.12  E-value=1.9  Score=46.56  Aligned_cols=82  Identities=10%  Similarity=-0.040  Sum_probs=60.8

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCC--CCCHHHHHHHHHhcCCcEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINT--RLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~--~~~~~~l~~~l~~~~~~~i~  117 (330)
                      +|++.+...+..+..   ..++.++|++..+++.+++. +..+|.++..|++++..+.  ...+..+...+++.+++.+.
T Consensus       435 ~sh~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~  511 (1389)
T TIGR03443       435 GRHFSLAYYFPWMAK---RFGLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTH  511 (1389)
T ss_pred             eccHHHHHHHHHHHH---hcCCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEE
Confidence            788877665544433   45889999999998877654 4456888899998876553  23577899999999999998


Q ss_pred             EcccchHH
Q 048729          118 VDHLHTYL  125 (330)
Q Consensus       118 ~~~~~~~~  125 (330)
                      ..|.++..
T Consensus       512 ~~Ps~~~~  519 (1389)
T TIGR03443       512 LTPAMGQL  519 (1389)
T ss_pred             eCHHHHHH
Confidence            87765443

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=90.06  E-value=2.8  Score=40.62  Aligned_cols=96  Identities=15%  Similarity=0.073  Sum_probs=67.8

Q ss_pred             HhcCCCcEEE-eCCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH-HHhh-hcCcEEee
Q 048729           26 AAYTDCPSLV-YNNT--------TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQ-FGVP-MSGAILNN   94 (330)
Q Consensus        26 ~~~p~~~a~~-~~~~--------~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~-la~~-~~G~~~~~   94 (330)
                      ...||.+|.+ ++++        -+||+-+...+..+.+.+.  -++++|+++.++|.++-+=-++ .++. ..|+++. 
T Consensus       187 ~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~--~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~-  263 (613)
T COG1022         187 PPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP--PIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVL-  263 (613)
T ss_pred             CCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC--CCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEE-
Confidence            3457777766 4432        2999999888888777764  3789999999999986553332 3333 3444433 


Q ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729           95 INTRLDAHTLSVLLQHSESKLVFVDHLHTYLL  126 (330)
Q Consensus        95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~  126 (330)
                      .  ..++..+..-+...+|++++..|.+++.+
T Consensus       264 ~--~~~~~~~~~dl~~~rPt~m~~VPRvwE~i  293 (613)
T COG1022         264 F--KEDPRTLLEDLKEVRPTVMIGVPRVWEKV  293 (613)
T ss_pred             e--cCCHHHHHHHHHHhCCeEEeechHHHHHH
Confidence            2  23578899999999999999998766554

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=90.04  E-value=3  Score=41.61  Aligned_cols=78  Identities=12%  Similarity=0.057  Sum_probs=54.8

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS--MYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~--~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|++.+...+.....   ..++.++|+++..+|..+.  +...+++.+..|+..+..+.......+...+.+.+++.+..
T Consensus       385 ~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~  461 (718)
T PRK08043        385 HSHKSLLANVEQIKT---IADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFG  461 (718)
T ss_pred             EcHHHHHHHHHHHHH---hhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEc
Confidence            888888666555443   3588999999999997543  34556788889998876664445556666777777777665


Q ss_pred             ccc
Q 048729          119 DHL  121 (330)
Q Consensus       119 ~~~  121 (330)
                      .|.
T Consensus       462 ~p~  464 (718)
T PRK08043        462 TST  464 (718)
T ss_pred             hHH
Confidence            543

>PRK07529 AMP-binding domain protein; Validated

Probab=89.94  E-value=3.4  Score=40.48  Aligned_cols=94  Identities=10%  Similarity=-0.008  Sum_probs=63.1

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHhhhcCcEEeecC
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVP--SMYELQFGVPMSGAILNNIN   96 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~--~~~~~~la~~~~G~~~~~l~   96 (330)
                      .++.+|.+. ++        -.+|++.+...+.....   ..++.++|+++...|...  ..+..+++.+..|+.++..+
T Consensus       211 ~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~  287 (632)
T PRK07529        211 GPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGAL---LLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLAT  287 (632)
T ss_pred             CcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHH---hcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecC
Confidence            346666654 32        23888887665544443   346789999999998764  33556788889999887665


Q ss_pred             CC-CC----HHHHHHHHHhcCCcEEEEcccchH
Q 048729           97 TR-LD----AHTLSVLLQHSESKLVFVDHLHTY  124 (330)
Q Consensus        97 ~~-~~----~~~l~~~l~~~~~~~i~~~~~~~~  124 (330)
                      +. +.    ...+..++++.+++.++..|..+.
T Consensus       288 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~  320 (632)
T PRK07529        288 PQGYRGPGVIANFWKIVERYRINFLSGVPTVYA  320 (632)
T ss_pred             ccccCcchHHHHHHHHHHHhCCeEEEeHHHHHH
Confidence            42 21    246777889999998887765443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=89.92  E-value=3.2  Score=43.67  Aligned_cols=94  Identities=10%  Similarity=0.067  Sum_probs=67.9

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecC
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNIN   96 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~   96 (330)
                      .+|.+|.+- ++        -.+|++.+...+.....   ..++.++|++...+|..+.+  ....++.+..|+..+..+
T Consensus       780 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~  856 (1146)
T PRK08633        780 KPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISD---VFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHP  856 (1146)
T ss_pred             CCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHH---hcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeC
Confidence            356666663 22        23888888766655443   45788999999888875433  444677788898887777


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEEcccchH
Q 048729           97 TRLDAHTLSVLLQHSESKLVFVDHLHTY  124 (330)
Q Consensus        97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~  124 (330)
                      ...+++.+.+.+++.+++.+...|..+.
T Consensus       857 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~  884 (1146)
T PRK08633        857 DPTDALGIAKLVAKHRATILLGTPTFLR  884 (1146)
T ss_pred             CCCCHHHHHHHHHHcCCeEEEecHHHHH
Confidence            6678889999999999999988776554

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=89.66  E-value=3.3  Score=40.22  Aligned_cols=80  Identities=9%  Similarity=-0.068  Sum_probs=59.8

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|++.+...+..+...   .+++++|+++..+|..+.+  +..+++++..|+..+. .+.+.+..+...+.+.+++.+..
T Consensus       219 ~sh~~l~~~~~~~~~~---~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~-~~~~~~~~~~~~i~~~~~t~~~~  294 (600)
T PRK08279        219 MSHMRWLKAMGGFGGL---LRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLAL-RRKFSASRFWDDVRRYRATAFQY  294 (600)
T ss_pred             EeHHHHHHHHHHHHHh---cCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEE-cCCCCHHHHHHHHHHhcceEEee
Confidence            8888887666655544   5889999999999987543  4456777778887764 55677888888899999988877


Q ss_pred             cccchH
Q 048729          119 DHLHTY  124 (330)
Q Consensus       119 ~~~~~~  124 (330)
                      .|.+..
T Consensus       295 ~p~l~~  300 (600)
T PRK08279        295 IGELCR  300 (600)
T ss_pred             hHHHHH
Confidence            665443

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=89.62  E-value=3.8  Score=39.00  Aligned_cols=94  Identities=9%  Similarity=-0.022  Sum_probs=65.6

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH---HHHHhhhcCcEEeec
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYE---LQFGVPMSGAILNNI   95 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~---~~la~~~~G~~~~~l   95 (330)
                      .++.+|++- ++        -.+|+..+...+....   ...++.++|++...+|.++.+-.   ..++++..|+..+..
T Consensus       181 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~  257 (527)
T TIGR02275       181 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSV---EICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLA  257 (527)
T ss_pred             CCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHH---hhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEEC
Confidence            456666663 22        2378887765554433   34678899999999997755422   367888889987654


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcccchHH
Q 048729           96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYL  125 (330)
Q Consensus        96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~  125 (330)
                       +...+..+...+++.+++++...|..+..
T Consensus       258 -~~~~~~~~~~~i~~~~~t~~~~~p~~~~~  286 (527)
T TIGR02275       258 -PDPSPTDCFPLIERHKVTVTALVPPAVAL  286 (527)
T ss_pred             -CCCCHHHHHHHHHHhCCeEEEecHHHHHH
Confidence             45677888889999999999887766543

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=89.52  E-value=2  Score=40.84  Aligned_cols=87  Identities=11%  Similarity=-0.061  Sum_probs=66.2

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHhhhcCcEEeecCCC--CCHHHHHHHHHhcCCcEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS--MYELQFGVPMSGAILNNINTR--LDAHTLSVLLQHSESKLV  116 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~--~~~~~la~~~~G~~~~~l~~~--~~~~~l~~~l~~~~~~~i  116 (330)
                      -|.+.+.-.....+.+.  ..++++|++....+....  ....+++.+.+|+..+..+..  .+++++.+++++.+++.+
T Consensus       191 H~~gg~l~~~~~~~~~~--~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~  268 (528)
T COG0365         191 HSHGGYLVEHRLTAKFH--GDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIF  268 (528)
T ss_pred             EeCchHHHHHHHHHHHh--hCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceE
Confidence            56665555554444443  456699999988888744  356679999999999877643  258999999999999999


Q ss_pred             EEcccchHHHHHH
Q 048729          117 FVDHLHTYLLLEA  129 (330)
Q Consensus       117 ~~~~~~~~~~~~~  129 (330)
                      ++.|..+..+...
T Consensus       269 ~tsPT~~R~l~~~  281 (528)
T COG0365         269 GTSPTFLRRLMKL  281 (528)
T ss_pred             eeCHHHHHHHHhc
Confidence            9999988877653

>PRK13388 acyl-CoA synthetase; Provisional

Probab=89.52  E-value=4.8  Score=38.51  Aligned_cols=89  Identities=12%  Similarity=0.019  Sum_probs=60.6

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecC
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNIN   96 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~   96 (330)
                      .++.+|++. ++        -.+|++.+...+..+..   ..+++++|++..+.|....+  +..+++.+..|+..+. .
T Consensus       148 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~-~  223 (540)
T PRK13388        148 DAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTE---RFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVAL-P  223 (540)
T ss_pred             CCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHH---HhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEE-C
Confidence            346677664 22        23788877655554443   45889999999988876443  3445567778887764 4


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEEcc
Q 048729           97 TRLDAHTLSVLLQHSESKLVFVDH  120 (330)
Q Consensus        97 ~~~~~~~l~~~l~~~~~~~i~~~~  120 (330)
                      +..++..+...+++.+++++...+
T Consensus       224 ~~~~~~~~~~~i~~~~vt~~~~~p  247 (540)
T PRK13388        224 AKFSASGFLDDVRRYGATYFNYVG  247 (540)
T ss_pred             CCCCHHHHHHHHHHhCCeEEEehH
Confidence            557788888899999988876543

>PRK07788 acyl-CoA synthetase; Validated

Probab=89.52  E-value=2  Score=41.14  Aligned_cols=80  Identities=13%  Similarity=0.023  Sum_probs=57.3

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|+..+...+.   ......++.++|++....|....+ +..++.++..|+.++.. ...+++.+...+++.+++.+...
T Consensus       227 ~s~~~~~~~~~---~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~vt~~~~~  302 (549)
T PRK07788        227 RPEPSPLAPLA---GLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLR-RRFDPEATLEDIAKHKATALVVV  302 (549)
T ss_pred             ccCccHHHHHH---HHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEEC-CCCCHHHHHHHHHHhCCcEEEEH
Confidence            66666644333   344466889999999888876544 33456678889887655 56778889999999999998887


Q ss_pred             ccchH
Q 048729          120 HLHTY  124 (330)
Q Consensus       120 ~~~~~  124 (330)
                      |..+.
T Consensus       303 P~~~~  307 (549)
T PRK07788        303 PVMLS  307 (549)
T ss_pred             HHHHH
Confidence            65443

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=89.47  E-value=2.2  Score=40.83  Aligned_cols=83  Identities=19%  Similarity=0.225  Sum_probs=58.9

Q ss_pred             ecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|...+...  ..+..+. ..++.++|++..+.|....+ ....++.+..|+.++..++.+.++.+...+++.+++.+..
T Consensus       196 ~s~~~~~~~--~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~  273 (539)
T PRK07008        196 YSHRSTVLH--AYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAG  273 (539)
T ss_pred             EecHHHHHH--HHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEe
Confidence            666655322  2222332 56788999999888875443 3344777889998887777788899999999999999888


Q ss_pred             cccchHH
Q 048729          119 DHLHTYL  125 (330)
Q Consensus       119 ~~~~~~~  125 (330)
                      .|..+..
T Consensus       274 ~P~~~~~  280 (539)
T PRK07008        274 VPTVWLG  280 (539)
T ss_pred             chHHHHH
Confidence            7765443

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=88.87  E-value=4.1  Score=39.05  Aligned_cols=80  Identities=10%  Similarity=0.041  Sum_probs=59.3

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|+..+.......   ....+++++|++....|.+..+ +..+++.+..|+.+++.+ ..+++.+...+++.+++.+...
T Consensus       200 ~t~~~~~~~~~~~---~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~  275 (542)
T PRK06155        200 CPHAQFYWWGRNS---AEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEP-RFSASGFWPAVRRHGATVTYLL  275 (542)
T ss_pred             EEHHHHHHHHHHH---HHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeC-CCCHHHHHHHHHHhCCcEEEch
Confidence            6887775544333   3345889999999999976554 345688888999887654 5678899999999999988877


Q ss_pred             ccchH
Q 048729          120 HLHTY  124 (330)
Q Consensus       120 ~~~~~  124 (330)
                      +..+.
T Consensus       276 p~~~~  280 (542)
T PRK06155        276 GAMVS  280 (542)
T ss_pred             HHHHH
Confidence            65443

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=88.59  E-value=3.4  Score=40.76  Aligned_cols=97  Identities=10%  Similarity=-0.078  Sum_probs=67.4

Q ss_pred             CCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHH--HcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecC
Q 048729           29 TDCPSLV-YNN--------TTYTWSETHRRCLQVASSLS--SVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNIN   96 (330)
Q Consensus        29 p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~--~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~   96 (330)
                      |+.+|.+ +++        -.+|++.+...+..+...+.  ...+.++|+++.++|.++.+ ....+.++..|+.++...
T Consensus       219 ~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~  298 (660)
T PLN02861        219 KTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQ  298 (660)
T ss_pred             CCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeC
Confidence            5666655 433        23888888776665554432  12357899999999987433 222344678888876553


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729           97 TRLDAHTLSVLLQHSESKLVFVDHLHTYLLL  127 (330)
Q Consensus        97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~  127 (330)
                        ..+..+...+++.+|++++..|.++..+.
T Consensus       299 --~~~~~~~~~i~~~~~T~~~~vP~~~~~l~  327 (660)
T PLN02861        299 --GDIRYLMEDVQALKPTIFCGVPRVYDRIY  327 (660)
T ss_pred             --CCHHHHHHHHHHhCCcEEeechHHHHHHH
Confidence              46788999999999999999998887664

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=88.41  E-value=3.9  Score=39.11  Aligned_cols=82  Identities=11%  Similarity=0.024  Sum_probs=60.1

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH---HHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY---ELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~---~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~  117 (330)
                      +|.+.+...+.....   ..+++++|++...+|.++.+-   ...++++..|+..+.. +...+......+++.+++++.
T Consensus       202 ~s~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~~l~~~~~t~~~  277 (536)
T PRK10946        202 RTHNDYYYSVRRSVE---ICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLA-PDPSATLCFPLIEKHQVNVTA  277 (536)
T ss_pred             EehHHHHHHHHHHHH---hcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEEC-CCCCHHHHHHHHHHhCCcEEE
Confidence            888888776665443   457899999999988775442   2468888899988754 445677788888999998888


Q ss_pred             EcccchHHH
Q 048729          118 VDHLHTYLL  126 (330)
Q Consensus       118 ~~~~~~~~~  126 (330)
                      ..|..+..+
T Consensus       278 ~~p~~~~~l  286 (536)
T PRK10946        278 LVPPAVSLW  286 (536)
T ss_pred             eChHHHHHH
Confidence            877655433

>PLN02654 acetate-CoA ligase

Probab=88.30  E-value=4.1  Score=40.27  Aligned_cols=67  Identities=9%  Similarity=-0.001  Sum_probs=52.2

Q ss_pred             HcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCC---CCCHHHHHHHHHhcCCcEEEEcccchHH
Q 048729           59 SVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINT---RLDAHTLSVLLQHSESKLVFVDHLHTYL  125 (330)
Q Consensus        59 ~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~i~~~~~~~~~  125 (330)
                      ..+++++|++...+|.+..+  ...+++.+..|+.++..+.   ...+..+..++++.+++.+.+.|..+..
T Consensus       311 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~  382 (666)
T PLN02654        311 AFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRS  382 (666)
T ss_pred             hcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHH
Confidence            46889999999888876433  4456788999999987764   2457889999999999999988766544

>PRK06839 acyl-CoA synthetase; Validated

Probab=88.09  E-value=6.8  Score=36.76  Aligned_cols=82  Identities=10%  Similarity=0.077  Sum_probs=58.7

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|+..+...+..   .....++.++|++..+.|....+  ....++.+..|+..+. +....++.+...+++.+++.+..
T Consensus       169 ~s~~~l~~~~~~---~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~-~~~~~~~~~~~~i~~~~~t~~~~  244 (496)
T PRK06839        169 LTQENMFWNALN---NTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIV-PRKFEPTKALSMIEKHKVTVVMG  244 (496)
T ss_pred             EEhHHHHHHHHH---HHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEE-ccCCCHHHHHHHHHhhCCeEEEe
Confidence            777776443332   23456889999999998876433  3445677888888754 45678889999999999999988


Q ss_pred             cccchHHH
Q 048729          119 DHLHTYLL  126 (330)
Q Consensus       119 ~~~~~~~~  126 (330)
                      .|.++..+
T Consensus       245 ~P~~~~~l  252 (496)
T PRK06839        245 VPTIHQAL  252 (496)
T ss_pred             hHHHHHHH
Confidence            77665443

>PRK07787 acyl-CoA synthetase; Validated

Probab=87.98  E-value=5.7  Score=37.18  Aligned_cols=78  Identities=12%  Similarity=-0.023  Sum_probs=57.0

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV--PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~--~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|++.+...+..+..   ..++.++|++....|..  ..+...+++.+..|+.++... ..+++.+...++ .+++.+..
T Consensus       148 ~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~-~~~t~~~~  222 (471)
T PRK07787        148 LSRRAIAADLDALAE---AWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTG-RPTPEAYAQALS-EGGTLYFG  222 (471)
T ss_pred             EeHHHHHHHHHHHHH---hcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecC-CCCHHHHHHHHh-hCceEEEc
Confidence            788888766655554   45788999998888764  334556788899999987654 467788888888 88888777


Q ss_pred             cccch
Q 048729          119 DHLHT  123 (330)
Q Consensus       119 ~~~~~  123 (330)
                      .|..+
T Consensus       223 ~P~~~  227 (471)
T PRK07787        223 VPTVW  227 (471)
T ss_pred             chHHH
Confidence            66544

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=87.94  E-value=4.2  Score=38.76  Aligned_cols=75  Identities=16%  Similarity=0.116  Sum_probs=52.7

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCC-CCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCC-CC--CHHHHHHHHHhcCCcE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQ-RGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINT-RL--DAHTLSVLLQHSESKL  115 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~-~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~-~~--~~~~l~~~l~~~~~~~  115 (330)
                      +|++.+...+..+..   ..++. ++|+++..+|..+.+ +..+++.+..|+.++..+. .+  .+..+...+.+.++++
T Consensus       172 ~th~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~  248 (525)
T PRK05851        172 LSPGAVLSNLRGLNA---RVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATL  248 (525)
T ss_pred             ecHHHHHHHHHHHHH---HhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeE
Confidence            888888766665544   34777 899999999987654 3455778888998876553 22  4566777777777776


Q ss_pred             EEE
Q 048729          116 VFV  118 (330)
Q Consensus       116 i~~  118 (330)
                      +.+
T Consensus       249 ~~~  251 (525)
T PRK05851        249 TAA  251 (525)
T ss_pred             EeC
Confidence            543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=87.92  E-value=6.7  Score=41.39  Aligned_cols=93  Identities=14%  Similarity=0.111  Sum_probs=64.2

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecC
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNIN   96 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~   96 (330)
                      .|+.++.+- ++        -.+|++.+...+....+   ..+++++|++...+|..+.+  ...++..+..|+..+..+
T Consensus       791 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~  867 (1140)
T PRK06814        791 DPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAA---RIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYP  867 (1140)
T ss_pred             CCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHH---hhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEec
Confidence            456666653 32        23888888666655554   44788999999999976443  345677778898887766


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEEcccch
Q 048729           97 TRLDAHTLSVLLQHSESKLVFVDHLHT  123 (330)
Q Consensus        97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~  123 (330)
                      .....+.+.+.+++.+++.+...|.++
T Consensus       868 ~~~~~~~~~~~i~~~~~t~~~~~p~~l  894 (1140)
T PRK06814        868 SPLHYRIIPELIYDTNATILFGTDTFL  894 (1140)
T ss_pred             CcccHHHHHHHHHhcCCEEEEecHHHH
Confidence            555566677788888888877666543

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=87.92  E-value=4.5  Score=40.57  Aligned_cols=97  Identities=9%  Similarity=-0.015  Sum_probs=66.9

Q ss_pred             cCCCcEEE-eCCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCC
Q 048729           28 YTDCPSLV-YNNT--------TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINT   97 (330)
Q Consensus        28 ~p~~~a~~-~~~~--------~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~   97 (330)
                      .|+.+|.+ ++++        -+|++-+...+..+.... ..+..+.|+++.++|.++.+ ....+.++..|+..+..+.
T Consensus       302 ~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~-~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~  380 (746)
T PTZ00342        302 DPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS-IFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSK  380 (746)
T ss_pred             CccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc-cccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCC
Confidence            35666655 4332        389988877766554321 11223568999999987543 2345667888998876653


Q ss_pred             CCCHHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729           98 RLDAHTLSVLLQHSESKLVFVDHLHTYLLL  127 (330)
Q Consensus        98 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~  127 (330)
                        ++..+...+.+.+|++++..|.++..+.
T Consensus       381 --~~~~l~~di~~~~pT~~~~VP~v~~~i~  408 (746)
T PTZ00342        381 --DINYFSKDIYNSKGNILAGVPKVFNRIY  408 (746)
T ss_pred             --CHHHHHHHHHHhCCcEEEchHHHHHHHH
Confidence              6788999999999999999998776654

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=87.43  E-value=5.4  Score=37.59  Aligned_cols=81  Identities=10%  Similarity=-0.006  Sum_probs=58.9

Q ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCC--CCHHHHHHHHHhcCCcEE
Q 048729           40 TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTR--LDAHTLSVLLQHSESKLV  116 (330)
Q Consensus        40 ~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~--~~~~~l~~~l~~~~~~~i  116 (330)
                      .+|+..+...+..+..   ..++..+|++....|.++.. +..+++++..|+..+..+..  ..+..+...+++.+++.+
T Consensus       160 ~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  236 (502)
T TIGR01734       160 QISHDNLVSFTNWMLA---DFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVW  236 (502)
T ss_pred             EEecHHHHHHHHHHHH---hCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEE
Confidence            3888888655544333   46888999999888877544 45668889999998877653  456778888888888887


Q ss_pred             EEcccch
Q 048729          117 FVDHLHT  123 (330)
Q Consensus       117 ~~~~~~~  123 (330)
                      ...|.+.
T Consensus       237 ~~~p~~~  243 (502)
T TIGR01734       237 VSTPSFV  243 (502)
T ss_pred             EEChhHH
Confidence            7776544

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK13382 acyl-CoA synthetase; Provisional

Probab=87.24  E-value=6.5  Score=37.57  Aligned_cols=80  Identities=10%  Similarity=0.013  Sum_probs=56.8

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|++.+...+   ...+...++.++|++....|....+ +...+..+..|+.++. ...++++.+...+++.+++++...
T Consensus       216 ~s~~~~~~~~---~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~-~~~~~~~~~~~~i~~~~vt~~~~~  291 (537)
T PRK13382        216 RSGPGGIGTL---KAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVT-RRRFDPEATLDLIDRHRATGLAVV  291 (537)
T ss_pred             eccchHHHHH---HHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEE-CCCcCHHHHHHHHHHhCCEEEEeh
Confidence            6665554333   3344456788999998888877554 3455777788888765 456788899999999999988887


Q ss_pred             ccchH
Q 048729          120 HLHTY  124 (330)
Q Consensus       120 ~~~~~  124 (330)
                      |..+.
T Consensus       292 P~~~~  296 (537)
T PRK13382        292 PVMFD  296 (537)
T ss_pred             HHHHH
Confidence            76543

>PRK13383 acyl-CoA synthetase; Provisional

Probab=86.99  E-value=7.8  Score=36.75  Aligned_cols=70  Identities=11%  Similarity=0.085  Sum_probs=50.0

Q ss_pred             HHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH
Q 048729           54 ASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY  124 (330)
Q Consensus        54 a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~  124 (330)
                      ...+...+++++|++....|....+ +...++.+..|+.+++.. ..+++.+...+++.+++.+...|.++.
T Consensus       206 ~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~  276 (516)
T PRK13383        206 VTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHR-HFDAEAALAQASLHRADAFTAVPVVLA  276 (516)
T ss_pred             HhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECC-CCCHHHHHHHHHHhCCcEEEecHHHHH
Confidence            3344566889999999998876443 344566677898887554 567788888888888888877665443

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=86.27  E-value=4.7  Score=39.65  Aligned_cols=66  Identities=12%  Similarity=-0.051  Sum_probs=50.0

Q ss_pred             HcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC---CCCHHHHHHHHHhcCCcEEEEcccchH
Q 048729           59 SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT---RLDAHTLSVLLQHSESKLVFVDHLHTY  124 (330)
Q Consensus        59 ~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~i~~~~~~~~  124 (330)
                      ..+++++|++..+.+.+......+++.+..|+..+..+.   ...+..+..++++.+++.+.+.|.++.
T Consensus       299 ~~~~~~~d~~~~~~~~~~~~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~  367 (655)
T PRK03584        299 HCDLGPGDRFFWYTTCGWMMWNWLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLD  367 (655)
T ss_pred             hcCCCCCCEEEEcCCchHHhHHHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHH
Confidence            457899999988887776554556788899998887653   346788888999999888877665443

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=86.27  E-value=7.3  Score=37.81  Aligned_cols=43  Identities=12%  Similarity=0.175  Sum_probs=38.4

Q ss_pred             EEeCceEEEec----CceEEEEecCCCeEEeCCeecCHHHHHHHHhc
Q 048729          202 FYTGDIGVMHA----DGYVEIKDRSKDVIISGGENICSAEVESVLYS  244 (330)
Q Consensus       202 ~~TGD~~~~~~----~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~  244 (330)
                      |+.||++++..    --.|.|+||.+.++.+.|++++-..++.++.+
T Consensus       410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence            89999999853    35799999999999999999999999998877

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=85.77  E-value=5.1  Score=39.24  Aligned_cols=67  Identities=12%  Similarity=0.087  Sum_probs=51.5

Q ss_pred             HcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCC---CCCHHHHHHHHHhcCCcEEEEcccchHH
Q 048729           59 SVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINT---RLDAHTLSVLLQHSESKLVFVDHLHTYL  125 (330)
Q Consensus        59 ~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~i~~~~~~~~~  125 (330)
                      ..+++++|++....+.+...  ...+++.+..|+..+..+.   ...+..+..++++.+++.+++.|..+..
T Consensus       268 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~  339 (628)
T TIGR02316       268 IFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRV  339 (628)
T ss_pred             hcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHH
Confidence            46889999999888876443  4557888999998876653   3457888899999999999887765543

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=85.71  E-value=11  Score=35.30  Aligned_cols=81  Identities=10%  Similarity=-0.011  Sum_probs=59.0

Q ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCC--CCHHHHHHHHHhcCCcEE
Q 048729           40 TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTR--LDAHTLSVLLQHSESKLV  116 (330)
Q Consensus        40 ~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~--~~~~~l~~~l~~~~~~~i  116 (330)
                      .+|++.+...+......   .++..+|++....|.++.. +..++..+..|+..+..+..  .++..+...+++.+++.+
T Consensus       162 ~~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~  238 (503)
T PRK04813        162 QISHDNLVSFTNWMLED---FALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVW  238 (503)
T ss_pred             EeehHHHHHHHHHHHHH---cCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEE
Confidence            38888887665555443   5788899999888877554 44556778889988777653  457788888888888888


Q ss_pred             EEcccch
Q 048729          117 FVDHLHT  123 (330)
Q Consensus       117 ~~~~~~~  123 (330)
                      ...|.+.
T Consensus       239 ~~~p~~~  245 (503)
T PRK04813        239 VSTPSFA  245 (503)
T ss_pred             EeChHHH
Confidence            7776544

>PTZ00297 pantothenate kinase; Provisional

Probab=85.08  E-value=7.6  Score=41.83  Aligned_cols=256  Identities=17%  Similarity=0.149  Sum_probs=177.0

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|++.+...+..+.......+..++|+++.++|..+-+ ....++++..|+....    .++..+...+++.+|++++..
T Consensus       621 LTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~----~d~~~lledL~~~rPTv~~~V  696 (1452)
T PTZ00297        621 VTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVAT----VDAAHLQRAFVKFQPTILVAA  696 (1452)
T ss_pred             EeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEe----CCHHHHHHHHHHHCCEEEEec
Confidence            99999988888876542222456889999999987443 3455777888987752    357899999999999999999


Q ss_pred             ccchHHHHHHhccCc-----------------------------------------------------------------
Q 048729          120 HLHTYLLLEALSLFP-----------------------------------------------------------------  134 (330)
Q Consensus       120 ~~~~~~~~~~~~~~~-----------------------------------------------------------------  134 (330)
                      |.++..+........                                                                 
T Consensus       697 Prv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~  776 (1452)
T PTZ00297        697 PSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL  776 (1452)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh
Confidence            987776543221100                                                                 


Q ss_pred             -----------------hHHHHhhccCCcccCceeEEEeCC-CCCcccCCCCceecEEEEecCcccccccCCchhhhccc
Q 048729          135 -----------------QRARLKARQGVKTVGLAEVDVVNP-ETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCI  196 (330)
Q Consensus       135 -----------------~~~~~~~~~G~~~~g~te~~i~d~-~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~  196 (330)
                                       .........|.|++|+ |++|.+. +.+..   +  ..|||+++       |+++|+.|.+.+
T Consensus       777 ~~i~i~~g~glTE~~~~~~~~~~~~~G~Plpgv-EvKI~~~~E~~~~---~--~~GEIlvr-------~~kdpe~T~e~~  843 (1452)
T PTZ00297        777 EHISVCYVPCLREVFFLPSEGVFCVDGTPAPSL-QVDLEPFDEPSDG---A--GIGQLVLA-------KKGEPRRTLPIA  843 (1452)
T ss_pred             CCceEEEecceEEeeeecCCCCcccCCeecCce-EEEEcccccccCC---C--CCCeEEEE-------ECCChHHHHHhh
Confidence                             0000000116677775 7777653 22221   1  24999995       457888887643


Q ss_pred             cCCCeEEeCceEEEecCceEEEEecCCCeEE-eCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCc
Q 048729          197 SDNGWFYTGDIGVMHADGYVEIKDRSKDVII-SGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDL  275 (330)
Q Consensus       197 ~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  275 (330)
                        +||+         +||+|.+.||++|++| .+|++|+|..||+.+..+|.|.+++|++..++    .++|+|+++...
T Consensus       844 --~gW~---------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd~e~  908 (1452)
T PTZ00297        844 --AQWK---------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPNRDT  908 (1452)
T ss_pred             --CcCc---------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeCHHH
Confidence              5675         6999999999999999 89999999999999999999999999998765    378888776421


Q ss_pred             cc---------C------CCCCHH--------HHHHHH-----HhcCCCCCCCceEEEcc-CC-----CCCCCCcccHHH
Q 048729          276 EL---------T------KKPTEK--------EIIEYC-----RARLPRYMVPRKVVFSE-EL-----PKTSTGKIQKYL  321 (330)
Q Consensus       276 ~~---------~------~~~~~~--------~l~~~l-----~~~l~~~~~p~~~~~v~-~l-----P~t~~GKv~r~~  321 (330)
                      -.         .      ......        ++.+.+     .+++..+++++.|.+++ +|     -.||+.|++|..
T Consensus       909 l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~  988 (1452)
T PTZ00297        909 VEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDA  988 (1452)
T ss_pred             HHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHH
Confidence            11         0      001112        233332     12256678888777754 44     479999999999


Q ss_pred             HHHHhhh
Q 048729          322 LREFAKS  328 (330)
Q Consensus       322 l~~~~~~  328 (330)
                      +.+.|++
T Consensus       989 I~~kY~~  995 (1452)
T PTZ00297        989 VHSYFSS  995 (1452)
T ss_pred             HHHHHHH
Confidence            9999865

>PRK07868 acyl-CoA synthetase; Validated

Probab=85.04  E-value=5.6  Score=41.37  Aligned_cols=65  Identities=12%  Similarity=0.094  Sum_probs=48.5

Q ss_pred             HcCCCCCCEEEEECCCCHHHH--HHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH
Q 048729           59 SVGIQRGHVVSVVAPNVPSMY--ELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY  124 (330)
Q Consensus        59 ~~g~~~gd~V~~~~~~~~~~~--~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~  124 (330)
                      ..++.++|+++..+|.++.+-  ..+++++..|+.+ .+.+.++++.+...+++.+++.+...|..+.
T Consensus       640 ~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~v-vl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~  706 (994)
T PRK07868        640 AAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRI-ALSRGLDPDRFVQEVRQYGVTVVSYTWAMLR  706 (994)
T ss_pred             hcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEE-EecCCCCHHHHHHHHHHhCCcEEEeHHHHHH
Confidence            457889999999999887653  3345555555554 4556788999999999999999987665443

>PRK07867 acyl-CoA synthetase; Validated

Probab=85.00  E-value=12  Score=35.81  Aligned_cols=76  Identities=13%  Similarity=0.024  Sum_probs=53.0

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|++.+...+..+..   ..+++++|++....|....+  +..++..+..|+.++. .+.++++.+...+++.+++.+..
T Consensus       172 ~s~~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~-~~~~~~~~~~~~i~~~~vt~~~~  247 (529)
T PRK07867        172 CTHRKVASAGVMLAQ---RFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIAL-RRKFSASGFLPDVRRYGATYANY  247 (529)
T ss_pred             ecHHHHHHHHHHHHH---hhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEe-cCCCCHHHHHHHHHHhCCeEEec
Confidence            788877655554433   45888999999988877544  3344556677877654 45677888888888888888765


Q ss_pred             cc
Q 048729          119 DH  120 (330)
Q Consensus       119 ~~  120 (330)
                      .+
T Consensus       248 ~p  249 (529)
T PRK07867        248 VG  249 (529)
T ss_pred             cH
Confidence            44

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=85.00  E-value=11  Score=36.09  Aligned_cols=80  Identities=14%  Similarity=0.031  Sum_probs=55.4

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecC-CCCCHHHHHHHHHhcCCcEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGI-QRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNIN-TRLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~-~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~-~~~~~~~l~~~l~~~~~~~i~  117 (330)
                      +|++.+...+..+.   ...++ ..+|++....|....+ +..+++.+..|+..+..+ ....++.+...+++.+++.+.
T Consensus       194 ~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~  270 (542)
T PRK07786        194 LTHANLTGQAMTCL---RTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIF  270 (542)
T ss_pred             hhHHHHHHHHHHHH---HhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEE
Confidence            67777755444433   34466 5677777777765432 456678888999887654 356788999999999999988


Q ss_pred             Ecccch
Q 048729          118 VDHLHT  123 (330)
Q Consensus       118 ~~~~~~  123 (330)
                      ..|.++
T Consensus       271 ~~P~~l  276 (542)
T PRK07786        271 LVPAQW  276 (542)
T ss_pred             ehHHHH
Confidence            876544

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=84.87  E-value=9.6  Score=36.03  Aligned_cols=65  Identities=15%  Similarity=0.135  Sum_probs=48.0

Q ss_pred             HcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH
Q 048729           59 SVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY  124 (330)
Q Consensus        59 ~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~  124 (330)
                      ..++.++|++....|.++.. ....+..+..|+..+.. +..+++.+...+++.++++++..|..+.
T Consensus       190 ~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~  255 (509)
T PRK12406        190 IYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQ-PRFDPEELLQLIERHRITHMHMVPTMFI  255 (509)
T ss_pred             hcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEc-cCCCHHHHHHHHHHcCCeEEEccHHHHH
Confidence            56889999999888876432 22334456778877654 4578899999999999999988876554

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=84.83  E-value=11  Score=35.99  Aligned_cols=79  Identities=9%  Similarity=0.018  Sum_probs=56.7

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS--MYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~--~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|++.+...+....   ...+++++|+++...|.++.  ++..++..+..|+..+. .+.+++..+...+++.+++.+..
T Consensus       215 ~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~-~~~~~~~~~~~~l~~~~vt~~~~  290 (538)
T TIGR03208       215 HTANTLFSNIHPYA---ERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVL-QDIWNPARAAELIRETGVTFTMA  290 (538)
T ss_pred             eehHHHHHHHHHHH---hhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEe-cCccCHHHHHHHHHHhCCeEEec
Confidence            67776655444333   34578899999999998754  45556777788887764 44677888888999999998876


Q ss_pred             cccch
Q 048729          119 DHLHT  123 (330)
Q Consensus       119 ~~~~~  123 (330)
                      .|..+
T Consensus       291 ~p~~~  295 (538)
T TIGR03208       291 STPFL  295 (538)
T ss_pred             CHHHH
Confidence            65443

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK06060 acyl-CoA synthetase; Validated

Probab=84.50  E-value=7.3  Score=38.75  Aligned_cols=81  Identities=4%  Similarity=-0.111  Sum_probs=56.8

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|++.+...+..+..  ...++.++|++....+..+.+  ...++..+..|+..+..+....+..+..++++.+++++..
T Consensus       165 ~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~  242 (705)
T PRK06060        165 HRHADPLTFVDAMCR--KALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYG  242 (705)
T ss_pred             EccccHHHHHHHHHH--HhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEee
Confidence            777777655544322  235788999998888766543  3445677788988877766677788888888888888877


Q ss_pred             cccch
Q 048729          119 DHLHT  123 (330)
Q Consensus       119 ~~~~~  123 (330)
                      .|.++
T Consensus       243 ~P~~l  247 (705)
T PRK06060        243 VPNFF  247 (705)
T ss_pred             HHHHH
Confidence            66544

>PRK07470 acyl-CoA synthetase; Validated

Probab=84.08  E-value=8.1  Score=36.74  Aligned_cols=85  Identities=18%  Similarity=0.084  Sum_probs=55.6

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecC-CCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN-TRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~-~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|++.+...+......+ ..+..++|++..++|.++.+....+..+..|+..+.++ ...+++.+...+++.+++++...
T Consensus       183 ~s~~~l~~~~~~~~~~~-~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~  261 (528)
T PRK07470        183 LTHGQMAFVITNHLADL-MPGTTEQDASLVVAPLSHGAGIHQLCQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTV  261 (528)
T ss_pred             EehhhHHHHHHHHHHHh-ccCCCcccEEEEeccchhHHHHHHHHHHhcCceEEEecccCcCHHHHHHHHHhcCCeEEech
Confidence            78877754333211111 12678899999999988665443333445566554443 46788899999999999999887


Q ss_pred             ccchHHH
Q 048729          120 HLHTYLL  126 (330)
Q Consensus       120 ~~~~~~~  126 (330)
                      |..+..+
T Consensus       262 P~~~~~l  268 (528)
T PRK07470        262 PTILKML  268 (528)
T ss_pred             HHHHHHH
Confidence            7665443

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=83.81  E-value=12  Score=35.79  Aligned_cols=75  Identities=11%  Similarity=0.013  Sum_probs=54.5

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS--MYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~--~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|+..+...+..   .....+++++|++....|.+..  ++..+++.+..|+..+... ..++..+...+++.++++++.
T Consensus       207 ~t~~~l~~~~~~---~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~  282 (547)
T PRK06087        207 LTHNNILASERA---YCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLD-IFTPDACLALLEQQRCTCMLG  282 (547)
T ss_pred             EecHHHHHHHHH---HHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHcCCCEEec
Confidence            777777544433   3335688999999998887754  3456677788899887665 457788888888888888765


Q ss_pred             c
Q 048729          119 D  119 (330)
Q Consensus       119 ~  119 (330)
                      .
T Consensus       283 ~  283 (547)
T PRK06087        283 A  283 (547)
T ss_pred             c
Confidence            3

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=83.31  E-value=9.3  Score=37.31  Aligned_cols=67  Identities=10%  Similarity=0.067  Sum_probs=50.3

Q ss_pred             HcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCC---CCCHHHHHHHHHhcCCcEEEEcccchHH
Q 048729           59 SVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINT---RLDAHTLSVLLQHSESKLVFVDHLHTYL  125 (330)
Q Consensus        59 ~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~i~~~~~~~~~  125 (330)
                      ..+++++|++....+.+...  ...+++.+..|+..+..+.   ...+..+..++++.+++.+.+.|..+..
T Consensus       272 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~  343 (625)
T TIGR02188       272 VFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRA  343 (625)
T ss_pred             ccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHH
Confidence            45889999998888776432  3456888899998876653   2357888999999999998887765543

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=83.25  E-value=11  Score=36.96  Aligned_cols=68  Identities=12%  Similarity=0.050  Sum_probs=51.4

Q ss_pred             HcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCC---CCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729           59 SVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINT---RLDAHTLSVLLQHSESKLVFVDHLHTYLL  126 (330)
Q Consensus        59 ~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~i~~~~~~~~~~  126 (330)
                      ..+++++|++...++.+...  ...+++.+..|+..+..+.   ..+++.+..++++.+++.+.+.|..+..+
T Consensus       281 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l  353 (637)
T PRK00174        281 VFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRAL  353 (637)
T ss_pred             ccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHH
Confidence            35888999998888766443  3457888899998876652   23578899999999999999887665443

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=82.94  E-value=11  Score=37.35  Aligned_cols=84  Identities=12%  Similarity=-0.086  Sum_probs=59.0

Q ss_pred             ecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEE
Q 048729           41 YTWSETHRRCLQVASSLSS--VGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLV  116 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~--~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i  116 (330)
                      +|++.+...+..+......  .++.++|+++.++|.++-+  ... +.++..|+.+.....  ....+...+...+|+++
T Consensus       240 lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~-~~~l~~G~~i~~~~~--~~~~l~~~l~~~~pt~~  316 (660)
T PLN02430        240 LTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIE-EYFFRKGASVGYYHG--DLNALRDDLMELKPTLL  316 (660)
T ss_pred             eecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHH-HHHHHcCCEEEEeCC--ChhhHHHHHHHhCCcEE
Confidence            7888876665554433322  2578899999999987433  333 445677887655443  45678899999999999


Q ss_pred             EEcccchHHHH
Q 048729          117 FVDHLHTYLLL  127 (330)
Q Consensus       117 ~~~~~~~~~~~  127 (330)
                      +..|.++..+.
T Consensus       317 ~~vP~~~~~l~  327 (660)
T PLN02430        317 AGVPRVFERIH  327 (660)
T ss_pred             EecHHHHHHHH
Confidence            99998876554

>PRK07798 acyl-CoA synthetase; Validated

Probab=82.66  E-value=15  Score=34.68  Aligned_cols=80  Identities=13%  Similarity=0.092  Sum_probs=54.8

Q ss_pred             ecHHHHHHHHHHHHHHHH------HcC------CCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecC-CCCCHHHHHH
Q 048729           41 YTWSETHRRCLQVASSLS------SVG------IQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNIN-TRLDAHTLSV  106 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~------~~g------~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~-~~~~~~~l~~  106 (330)
                      +|++.+...+.....++.      ..+      ..+++++....|..+.+ +...++.+..|+.++..+ ...++..+..
T Consensus       183 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~  262 (533)
T PRK07798        183 WRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWR  262 (533)
T ss_pred             EecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHH
Confidence            777777654444333331      111      26788888888877544 445678888899887665 2667888999


Q ss_pred             HHHhcCCcEEEEcc
Q 048729          107 LLQHSESKLVFVDH  120 (330)
Q Consensus       107 ~l~~~~~~~i~~~~  120 (330)
                      .+++.+++.+++.+
T Consensus       263 ~i~~~~~t~~~~~~  276 (533)
T PRK07798        263 TIEREKVNVITIVG  276 (533)
T ss_pred             HHHHhCCeEEEech
Confidence            99999999988764

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=81.97  E-value=7.8  Score=38.19  Aligned_cols=64  Identities=11%  Similarity=0.005  Sum_probs=47.6

Q ss_pred             HcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeecCC--C-CCHHHHHHHHHhcCCcEEEEcccc
Q 048729           59 SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT--R-LDAHTLSVLLQHSESKLVFVDHLH  122 (330)
Q Consensus        59 ~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l~~--~-~~~~~l~~~l~~~~~~~i~~~~~~  122 (330)
                      ..+++++|++..+.+.+..+...+++.+..|+..+..+.  . ..+..+..++++.+++++.+.+.+
T Consensus       300 ~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~  366 (652)
T TIGR01217       300 HCDLGPGDRLFYYTTTGWMMWNWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKY  366 (652)
T ss_pred             ccCCCCCcEEEEeCCcchhhhHHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHH
Confidence            468999999998888776544445688899998887752  2 256788888999998887665543

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PLN02574 4-coumarate--CoA ligase-like

Probab=81.96  E-value=13  Score=35.63  Aligned_cols=83  Identities=11%  Similarity=0.001  Sum_probs=56.6

Q ss_pred             ecHHHHHHHHHHHHHHHH-HcCCC-CCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEE
Q 048729           41 YTWSETHRRCLQVASSLS-SVGIQ-RGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLV  116 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~-~~g~~-~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i  116 (330)
                      +|++.+...+..+.+... ..+.. ..++++..+|....+  ...+++.+..|+.++..+ ..+++.+...+++.+++.+
T Consensus       218 ~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~  296 (560)
T PLN02574        218 LTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMR-RFDASDMVKVIDRFKVTHF  296 (560)
T ss_pred             EeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEec-CCCHHHHHHHHHHcCCeEE
Confidence            888888776666654332 22332 345666677765433  344567778899887654 5778999999999999998


Q ss_pred             EEcccchH
Q 048729          117 FVDHLHTY  124 (330)
Q Consensus       117 ~~~~~~~~  124 (330)
                      ...|..+.
T Consensus       297 ~~~P~~~~  304 (560)
T PLN02574        297 PVVPPILM  304 (560)
T ss_pred             ecCCHHHH
Confidence            87765543

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=81.80  E-value=14  Score=36.10  Aligned_cols=94  Identities=11%  Similarity=-0.097  Sum_probs=60.2

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCC--CCCEEEEECCCCHHH--HHHHHHhhhcCcEEee
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQ--RGHVVSVVAPNVPSM--YELQFGVPMSGAILNN   94 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~--~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~   94 (330)
                      .++.+|++. ++        -.+|++.+...+..+...+   ++.  .+|+++.++|.++.+  ...++.++..|+.++.
T Consensus       207 ~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~  283 (614)
T PRK08180        207 GPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF---PFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYI  283 (614)
T ss_pred             CcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc---cccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEE
Confidence            356666653 32        2388888876666555443   332  567888888876543  4556777888988876


Q ss_pred             cCCCCCH---HHHHHHHHhcCCcEEEEcccchH
Q 048729           95 INTRLDA---HTLSVLLQHSESKLVFVDHLHTY  124 (330)
Q Consensus        95 l~~~~~~---~~l~~~l~~~~~~~i~~~~~~~~  124 (330)
                      .+....+   ..+...+++.+++.++..|..+.
T Consensus       284 ~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~  316 (614)
T PRK08180        284 DDGKPTPGGFDETLRNLREISPTVYFNVPKGWE  316 (614)
T ss_pred             eCCCccchhHHHHHHHHHHhCCcEEechHHHHH
Confidence            5533333   35566778888888887765543

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=81.15  E-value=13  Score=35.55  Aligned_cols=67  Identities=16%  Similarity=0.213  Sum_probs=50.5

Q ss_pred             HcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHH
Q 048729           59 SVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYL  125 (330)
Q Consensus        59 ~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~  125 (330)
                      ..+++.+|++....|....+ +...+.++..|+.++.....+.++.+...+++.+++++...|..+..
T Consensus       214 ~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~  281 (542)
T PRK06018        214 ALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLM  281 (542)
T ss_pred             hcCCCCCCEEEEecCHHHHhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHH
Confidence            56788999999888876443 23345667888887755556778888999999999999888766543

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=80.81  E-value=8.8  Score=36.48  Aligned_cols=74  Identities=15%  Similarity=0.029  Sum_probs=58.8

Q ss_pred             ecHHHHHHHHHHHHH-HHHHcCCCCCCEEEEECCCC--HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEE
Q 048729           41 YTWSETHRRCLQVAS-SLSSVGIQRGHVVSVVAPNV--PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        41 ~T~~el~~~~~~~a~-~L~~~g~~~gd~V~~~~~~~--~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~  117 (330)
                      +|+....    +.+. .....|+++.|+|-+.+|..  ...++.+-+|+..|++++ +...+|+...-.-+.+++++++.
T Consensus       262 ith~r~~----~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~V-lrkKFSAS~FW~DC~k~~~Tv~Q  336 (649)
T KOG1179|consen  262 ITHLRYL----QGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVV-LRKKFSASNFWDDCRKYNVTVIQ  336 (649)
T ss_pred             HHHHHHH----HHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEE-EecccchhhhHHHHHHhCCeeee
Confidence            6655544    3444 44467999999999999975  455888899999999986 88899999999999999999887


Q ss_pred             Ec
Q 048729          118 VD  119 (330)
Q Consensus       118 ~~  119 (330)
                      .-
T Consensus       337 YI  338 (649)
T KOG1179|consen  337 YI  338 (649)
T ss_pred             hH
Confidence            43

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	330
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		6e-36
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		4e-34
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		9e-25
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		9e-25
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		1e-24
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		4e-24
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		4e-23
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		6e-23
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		7e-23
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		3e-21
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-21
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-20
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-20
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-20
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		2e-20
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		3e-20
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		6e-20
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		6e-20
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		6e-20
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-19
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		5e-19
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		4e-17
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		4e-17
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		6e-17
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		8e-16
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-15
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		4e-15
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		9e-15
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		9e-15
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		9e-15
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-14
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		1e-14
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		1e-14
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		6e-14
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		4e-12
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		1e-10
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		1e-10
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		1e-10
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		1e-10
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		6e-10
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		6e-10
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		7e-10
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		8e-10
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-09
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		4e-09
3dhv_A	512	Crystal Structure Of Dlta Protein In Complex With D		9e-07
3fcc_A	512	Crystal Structure Of Dlta Protein In Complex With A		9e-07
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		1e-06
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		3e-06
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		5e-06
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		6e-05
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		2e-04

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score =  147 bits (372), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 102/153 (66%), Gaps = 6/153 (3%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           GEVV++   +   Y+   EATR    DNGWF TGDIG +  +GY+ IKDR KD+IISGGE
Sbjct: 363 GEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGE 421
Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
           N+  AE+ESV+  +  V+E AV+  PD  WGEI  A V   ++     + +E++I+EYC 
Sbjct: 422 NVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQN-----EVSEQQIVEYCG 476
Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            RL RY +P+KV+F+E +P+  TGKI K +LRE
Sbjct: 477 TRLARYKLPKKVIFAEAIPRNPTGKILKTVLRE 509

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  141 bits (356), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 125/203 (61%), Gaps = 9/203 (4%)
Query: 127 LEALSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYF 186
           LE+LS   ++  LKA+ G+  + L  + V + E G  V +DG +LGEV L+G  +T GY+
Sbjct: 342 LESLSE-EEKLTLKAKTGL-PIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYY 398
Query: 187 KDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSIT 246
            ++EATR  ++ +G+F TGDI V   +GYVEIKDR KD+I SGGE I S ++E+ L    
Sbjct: 399 GNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHP 458
Query: 247 AVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEY-CRARLPRYMVPRKVVF 305
            V EAAVVA P   W E P A V  +      +KPT +E+ E+  +A   ++ +P   VF
Sbjct: 459 KVKEAAVVAIPHPKWQERPLAVVVPR-----GEKPTPEELNEHLLKAGFAKWQLPDAYVF 513
Query: 306 SEELPKTSTGKIQKYLLREFAKS 328
           +EE+P+TS GK  K  LRE  K+
Sbjct: 514 AEEIPRTSAGKFLKRALREQYKN 536

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score =  110 bits (276), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 112/196 (57%), Gaps = 11/196 (5%)
Query: 134 PQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVS-LGEVVLRGGCVTVGYFKDKEAT 192
           P R      QGV    + E+ V++ E G  +   GV   GE+V+RG  +  GY+K ++  
Sbjct: 349 PLRLDKSTTQGVPXSDI-ELKVISLEDGREL---GVGESGEIVIRGPNIFKGYWKREKEN 404
Query: 193 RRC--ISDNG--WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAV 248
           + C    + G  +F TGD+G +  +G++  +DR K+VI   G  I   E+E++L    AV
Sbjct: 405 QECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAV 464
Query: 249 NEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEE 308
            + AV+ +PD   GE+P AF+ LK   E   K  E++IIE+ R R+  Y   R+V F EE
Sbjct: 465 XDVAVIGKPDEEAGEVPKAFIVLKP--EYRGKVDEEDIIEWVRERISGYKRVREVEFVEE 522
Query: 309 LPKTSTGKIQKYLLRE 324
           LP+T++GK+ + LLRE
Sbjct: 523 LPRTASGKLLRRLLRE 538

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  110 bits (276), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 100/175 (57%), Gaps = 6/175 (3%)
Query: 155 VVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADG 214
           V +PETG+ + R    +G + ++G  V  GY++  E T+    D+G+F TGD+G +   G
Sbjct: 333 VTDPETGKELPRG--DIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERG 390
Query: 215 YVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRD 274
           YV I  R KD++I+GG N+   E+ES + +   V E+AV+  P   +GE   A V   + 
Sbjct: 391 YVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAVVVRDKG 450
Query: 275 LELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV 329
             +     E +++     +L ++  P+KV+F ++LP+ + GK+QK +LRE  K +
Sbjct: 451 ATI----DEAQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNVLRETYKDI 501

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Query: 155 VVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADG 214
           V +PETG  + R  + + EV   G  V  GY++  E T     D+G+F TGD+G +   G
Sbjct: 333 VTDPETGXELPRGDIGMIEVX--GPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERG 390
Query: 215 YVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRD 274
           YV I  R  D++I+GG N+   E+ES + ++  V E+AV+  P   +GE   AFV L R+
Sbjct: 391 YVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXRE 450
Query: 275 LELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
                 P+E +++     +L  + +P  V+F ++LP+ + G +Q  +LRE
Sbjct: 451 F----APSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 96/173 (55%), Gaps = 9/173 (5%)
Query: 155 VVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADG 214
           V +PETG  + R  + + EV   G  V  GY++  E T     D+G+F TGD+G +   G
Sbjct: 333 VTDPETGXELPRGDIGMIEVX--GPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERG 390
Query: 215 YVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRD 274
           YV I  R  D++I+GG N+   E+ES + ++  V E+AV+  P   +GE   AFV L R+
Sbjct: 391 YVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXRE 450
Query: 275 LELTKKPTE---KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
                 P+E   +E+  +   RL  + +P  V+F ++LP+ + G +Q  +LRE
Sbjct: 451 F----APSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 499

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 89/154 (57%), Gaps = 6/154 (3%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           G ++ RG     GY+K +E      +++G++ TGDI  +  DGY+ ++ R+KD I  GGE
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
            + + EVE+ L +  AV++AA+V+ PD F GE  C F+ + RD    + P   E+  + R
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFI-IPRD----EAPKAAELKAFLR 493
Query: 292 AR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            R L  Y +P +V F E  P+T  GK+ K  LRE
Sbjct: 494 ERGLAAYKIPDRVEFVESFPQTGVGKVSKKALRE 527

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 6/154 (3%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           G ++ RG     GY+K +E      +++G++ TGDI  +  DGY+ ++ R+KD I  GGE
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
            + + EVE+ L +  AV++AA V+ PD F GE  C F+ + RD    + P   E+  + R
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFI-IPRD----EAPKAAELKAFLR 493
Query: 292 AR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            R L  Y +P +V F E  P+T  GK+ K  LRE
Sbjct: 494 ERGLAAYKIPDRVEFVESFPQTGVGKVSKKALRE 527

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 8/148 (5%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGE 231
           GE++++G  V  GY    + T     +NG+F TGDI  +  +GYV I DR KD+IISGGE
Sbjct: 349 GELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGE 406
Query: 232 NICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR 291
           NI   ++E+V      +++A  V  PD  WG++P  +   + D+      ++ ++I Y  
Sbjct: 407 NIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------SKAQLIAYLS 460
Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKIQK 319
             L +Y VP+     + LP TSTGK+Q+
Sbjct: 461 KHLAKYKVPKHFEKVDTLPYTSTGKLQR 488

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 92/170 (54%), Gaps = 6/170 (3%)
Query: 155 VVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADG 214
           V +PETG  + R  + + EV   G  V  GY++  E T     D+G+F TGD+G +   G
Sbjct: 333 VTDPETGXELPRGDIGMIEVX--GPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERG 390
Query: 215 YVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRD 274
           YV I  R  D++I+GG N+   E+ES + ++  V E+AV+  P   +GE   A V   RD
Sbjct: 391 YVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVV--VRD 448
Query: 275 LELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
              T    E +++     +L  + +P  V+F ++LP+ + G +Q  +LRE
Sbjct: 449 XGATID--EAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVM 210
           AE+ +V+PETG S+ R+    GE+ +RG  +  GY  D EAT R I   GW +TGDIG +
Sbjct: 364 AEMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYI 421
Query: 211 HADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVS 270
             D  + I DR K++I   G  +  AE+E++L +   +++AAVV   D   GE+P AFV 
Sbjct: 422 DDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFV- 480
Query: 271 LKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
           +K +     + TE EI +Y   ++  Y   ++V F E +PK  +GKI +  L+E
Sbjct: 481 VKSE---KSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKE 531

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 9/181 (4%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT 204
           K V   E  VV+ +TG+++   GV+  GE+ +RG  +  GY  + EAT   I  +GW ++
Sbjct: 364 KVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 420
Query: 205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEI 264
           GDI     D +  I DR K +I   G  +  AE+ES+L     + +A V   PD   GE+
Sbjct: 421 GDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGEL 480
Query: 265 PCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLR 323
           P A V     LE  K  TEKEI++Y  +++      R  VVF +E+PK  TGK+    +R
Sbjct: 481 PAAVVV----LEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 536
Query: 324 E 324
           E
Sbjct: 537 E 537

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 9/181 (4%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT 204
           K V   E  VV+ +TG+++   GV+  GE+ +RG  +  GY  + EAT   I  +GW ++
Sbjct: 364 KVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 420
Query: 205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEI 264
           GDI     D +  I DR K +I   G  +  AE+ES+L     + +A V   PD   GE+
Sbjct: 421 GDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGEL 480
Query: 265 PCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLR 323
           P A V     LE  K  TEKEI++Y  +++      R  VVF +E+PK  TGK+    +R
Sbjct: 481 PAAVVV----LEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 536
Query: 324 E 324
           E
Sbjct: 537 E 537

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 9/181 (4%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT 204
           K V   E  VV+ +TG+++   GV+  GE+ +RG  +  GY  + EAT   I  +GW ++
Sbjct: 369 KVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 425
Query: 205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEI 264
           GDI     D +  I DR K +I   G  +  AE+ES+L     + +A V   PD   GE+
Sbjct: 426 GDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGEL 485
Query: 265 PCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLR 323
           P A V     LE  K  TEKEI++Y  +++      R  VVF +E+PK  TGK+    +R
Sbjct: 486 PAAVVV----LEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 541
Query: 324 E 324
           E
Sbjct: 542 E 542

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 9/181 (4%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT 204
           K V   E  VV+ +TG+++   GV+  GE+ +RG  +  GY  + EAT   I  +GW ++
Sbjct: 369 KVVPFFEAKVVDLDTGKTL---GVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHS 425
Query: 205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEI 264
           GDI     D +  I DR K +I   G  +  AE+ES+L     + +A V   PD   GE+
Sbjct: 426 GDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGEL 485
Query: 265 PCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLR 323
           P A V     LE  K  TEKEI++Y  +++      R  VVF +E+PK  TGK+    +R
Sbjct: 486 PAAVVV----LEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 541
Query: 324 E 324
           E
Sbjct: 542 E 542

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 171 LGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRS--KDVIIS 228
           +GE+VLRG  V  GY+ +  AT+     NGW +TGD+G   ADGY+    R+  K++I +
Sbjct: 347 VGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKT 405
Query: 229 GGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIE 288
           GGEN+  AEVE  L    A+ +A V+  PD  W E   A    K    +        + E
Sbjct: 406 GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAA----DALAE 461
Query: 289 YCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
           +  + + RY  P+ VVF E LPK + G I +  ++
Sbjct: 462 FVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVK 496

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 7/183 (3%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTG 205
           K V L +  V++ +T +S+  +    GEV ++G  +  GY  + EAT+  I + GW +TG
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423
Query: 206 DIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIP 265
           DIG    + +  I DR K +I   G  +  AE+ESVL    ++ +A V   PD   GE+P
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELP 483
Query: 266 CAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLRE 324
            A V     LE  K  TEKE+++Y  +++      R  V F +E+PK  TGKI    +RE
Sbjct: 484 GAVVV----LESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIRE 539
Query: 325 FAK 327
             K
Sbjct: 540 ILK 542

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 7/183 (3%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTG 205
           K V L +  V++ +T +S+  +    GEV ++G  +  GY  + EAT+  I + GW +TG
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423
Query: 206 DIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIP 265
           DIG    + +  I DR K +I   G  +  AE+ESVL    ++ +A V   PD   GE+P
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELP 483
Query: 266 CAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLRE 324
            A V     LE  K  TEKE+++Y  +++      R  V F +E+PK  TGKI    +RE
Sbjct: 484 GAVVV----LESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIRE 539
Query: 325 FAK 327
             K
Sbjct: 540 ILK 542

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 7/183 (3%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTG 205
           K V L +  V++ +T +S+  +    GEV ++G  +  GY  + EAT+  I + GW +TG
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423
Query: 206 DIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIP 265
           DIG    + +  I DR K +I   G  +  AE+ESVL    ++ +A V   PD   GE+P
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELP 483
Query: 266 CAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLRE 324
            A V     LE  K  TEKE+++Y  +++      R  V F +E+PK  TGKI    +RE
Sbjct: 484 GAVVV----LESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIRE 539
Query: 325 FAK 327
             K
Sbjct: 540 ILK 542

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVM 210
           AE+ +V+P+TG+S+ R+    GE+ +RG  +  GY  +  AT   I  +GW +TGDIG++
Sbjct: 411 AEMKIVDPDTGDSLSRN--QPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLI 468
Query: 211 HADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVS 270
             D  + I DR K++I   G  +  AE+E++L     + + AVVA  +   GE+P AFV 
Sbjct: 469 DDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVV 528
Query: 271 LKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
             +D EL    +E ++ ++   ++  Y    KV F+E +PK  +GKI +  LR
Sbjct: 529 KSKDSEL----SEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLR 577

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 9/181 (4%)
Query: 146 KTVGLAEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYT 204
           K V      +V+ +TG+++   GV+  GE+ ++G  +  GY  + EAT   I  +GW ++
Sbjct: 399 KVVPFFSAKIVDLDTGKTL---GVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHS 455
Query: 205 GDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEI 264
           GDI     DGY  I DR K +I   G  +  AE+ES+L     + +A V   PD   GE+
Sbjct: 456 GDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGEL 515
Query: 265 PCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLR 323
           P A V     LE  K  TE+E+++Y   ++      R  V F +E+PK  TGKI    +R
Sbjct: 516 PAAVVV----LEEGKTMTEQEVMDYVAGQVTASKRLRGGVKFVDEVPKGLTGKIDARKIR 571
Query: 324 E 324
           E
Sbjct: 572 E 572

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Query: 184 GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLY 243
           GY  + + T   I  + W   GD G+   DGY +   R+ D+I S G  I  +EVE+ L 
Sbjct: 418 GYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALM 476
Query: 244 SITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTE--KEIIEYCRARLPRYMVPR 301
              AV E AV++ PD   GE+  AFV L     L+  P +  KE+ ++ ++    Y  PR
Sbjct: 477 EHPAVVETAVISSPDPVRGEVVKAFVVLASQF-LSHDPEQLTKELQQHVKSVTAPYKYPR 535
Query: 302 KVVFSEELPKTSTGKIQKYLLRE 324
           K+ F   LPKT TGKIQ+  LR+
Sbjct: 536 KIEFVLNLPKTVTGKIQRAKLRD 558

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Query: 184 GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLY 243
           GY  + + T   I  + W   GD G+   DGY +   R+ D+I S G  I  +EVE+ L 
Sbjct: 418 GYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALM 476
Query: 244 SITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTE--KEIIEYCRARLPRYMVPR 301
              AV E AV++ PD   GE+  AFV L     L+  P +  KE+ ++ ++    Y  PR
Sbjct: 477 EHPAVVETAVISSPDPVRGEVVKAFVVLASQF-LSHDPEQLTKELQQHVKSVTAPYKYPR 535
Query: 302 KVVFSEELPKTSTGKIQKYLLRE 324
           K+ F   LPKT TGKIQ+  LR+
Sbjct: 536 KIEFVLNLPKTVTGKIQRAKLRD 558

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 98/205 (47%), Gaps = 6/205 (2%)
Query: 121 LHTYLLLEALSLFPQRARLKARQGVKTVGLAEVDV-VNPETGESVKR-DGVSLGEVVLRG 178
           +  Y + E L     RA  + R G   V L  V++ +  E G  +   DG S+GE+ +RG
Sbjct: 301 IERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRG 360
Query: 179 GCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDR-SKDVIISGGENICSAE 237
             +   Y    +AT    +++G+F TGD+ V   DGYV I  R + D+I SGG  I + E
Sbjct: 361 PNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGE 420
Query: 238 VESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY 297
           +E+ L     V EAAV   PD   GE   A++            T   + ++  ARL  +
Sbjct: 421 IENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGT---LADHVAARLAPH 477
Query: 298 MVPRKVVFSEELPKTSTGKIQKYLL 322
             PR V + + +P+   GKI K  L
Sbjct: 478 KRPRVVRYLDAVPRNDMGKIMKRAL 502

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Query: 171 LGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGG 230
           +G ++ RG     GY+K  +        NG++ +GD+  +  +GY+ ++ R KD I  GG
Sbjct: 382 VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGG 441
Query: 231 ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYC 290
           E I + E+E++L    AV  AA+V+  D   GE  CA++ +K  L         ++  + 
Sbjct: 442 EKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAV------QVRRFL 495
Query: 291 RAR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS 328
           R + +  + +P +V   + LP T+ GK+ K  LR++  S
Sbjct: 496 REQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 171 LGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGG 230
           +G +  RG     GY++  E   +   ++ ++Y+GD+     DG + +  R KD I  GG
Sbjct: 387 IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGG 446
Query: 231 ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYC 290
           E I S E+E ++     V  AA+VA  D  +GE  CAF+ + R+ EL      + ++E  
Sbjct: 447 EKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFI-VSRNPELKAVVLRRHLMELG 505
Query: 291 RARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
            A   +Y +P ++   E LP T+ GK+ K  LR
Sbjct: 506 IA---QYKLPDQIKLIESLPLTAVGKVDKKQLR 535

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
           VGY    EAT   + D GW+ T D+ V   +G V I  R  D+IISGGENI  +E+E VL
Sbjct: 363 VGYLNQPEATAEKLQD-GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYMVPR 301
            +   V E  V+   D  WG+   A V  +    L +  +   +  +CR + L  +  P+
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPR----LGETLSADALDTFCRSSELADFKRPK 477
Query: 302 KVVFSEELPKTSTGKIQKYLLREFAKSVS 330
           +    ++LPK +   + K L R+  + VS
Sbjct: 478 RYFILDQLPKNA---LNKVLRRQLVQQVS 503

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
           VGY    +AT   + D GW+ T D+ V   +G V I  R  D+IISGGENI  +E+E VL
Sbjct: 363 VGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYMVPR 301
            +   V E  V+   D  WG+   A V  +    L +  +   +  +CR + L  +  P+
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPR----LGETLSADALDTFCRSSELADFKRPK 477
Query: 302 KVVFSEELPKTSTGKIQKYLLREFAKSVS 330
           +    ++LPK +   + K L R+  + VS
Sbjct: 478 RYFILDQLPKNA---LNKVLRRQLVQQVS 503

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
           VGY    +AT   + D GW+ T D+ V   +G V I  R  D+IISGGENI  +E+E VL
Sbjct: 363 VGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYMVPR 301
            +   V E  V+   D  WG+   A V  +    L +  +   +  +CR + L  +  P+
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPR----LGETLSADALDTFCRSSELADFKRPK 477
Query: 302 KVVFSEELPKTSTGKIQKYLLREFAKSVS 330
           +    ++LPK +   + K L R+  + VS
Sbjct: 478 RYFILDQLPKNA---LNKVLRRQLVQQVS 503

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
           VGY    +AT   + D GW+ T D+ V   +G V I  R  D+IISGGENI  +E+E VL
Sbjct: 363 VGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYMVPR 301
            +   V E  V+   D  WG+   A V  +    L +  +   +  +CR + L  +  P+
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPR----LGETLSADALDTFCRSSELADFKRPK 477
Query: 302 KVVFSEELPKTSTGKIQKYLLREFAKSVS 330
           +    ++LPK +  K+   L R+  + VS
Sbjct: 478 RYFILDQLPKNALNKV---LRRQLVQQVS 503

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
           VGY    +AT   + D GW+ T D+ V   +G V I  R  D+IISGGENI  +E+E VL
Sbjct: 363 VGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVL 421
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYMVPR 301
            +   V E  V+   D  WG+   A V  +    L +  +   +  +CR + L  +  P+
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPR----LGETLSADALDTFCRSSELADFKRPK 477
Query: 302 KVVFSEELPKTSTGKIQKYLLREFAKSVS 330
           +    ++LPK +  K+   L R+  + VS
Sbjct: 478 RYFILDQLPKNALNKV---LRRQLVQQVS 503

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 13/170 (7%)
Query: 159 ETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEI 218
           E G +V  DG  +G++ ++G    V Y+ ++E +R       W  +GD      +G    
Sbjct: 368 EAGHAVP-DG-EVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVY 424
Query: 219 KDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPC-AFVSLKRDLEL 277
             RS D++   G+ +   EVE VL    AV EAAVV       G +   AFV LKR+   
Sbjct: 425 AGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDH--GGLVKTRAFVVLKREF-- 480
Query: 278 TKKPTE---KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
              P+E   +E+  + + RL  +  PR +VF ++LPKT+TGKIQ++ LRE
Sbjct: 481 --APSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 9/149 (6%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
           VGY    +AT   + D GW+ T D+ V   +G V I  R  D IISGGENI  +E+E VL
Sbjct: 363 VGYLNQPQATAEKLQD-GWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVL 421
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYMVPR 301
            +   V E  V+   D  WG+   A V  +    L +  +   +  +CR + L  +  P+
Sbjct: 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPR----LGETLSADALDTFCRSSELADFKRPK 477
Query: 302 KVVFSEELPKTSTGKIQKYLLREFAKSVS 330
           +    ++LPK +   + K L R+  + VS
Sbjct: 478 RYFILDQLPKNA---LNKVLRRQLVQQVS 503

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 183 VGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL 242
           V Y KD E T     D G+++TGD+  M  DGY+    R+ D+I + G  +   EVES L
Sbjct: 436 VHYGKDPERTEETWHD-GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESAL 494
Query: 243 YSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRK 302
               AV E A+   PD   G++  A + L +D   +    + E+ ++ +     Y  PR 
Sbjct: 495 IQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDS-LKNELQDHVKNVTAPYKYPRI 553
Query: 303 VVFSEELPKTSTGKIQKYLLREFAKS 328
           + F  ELPKT +GKI++  +R+  +S
Sbjct: 554 IEFVPELPKTISGKIRRVEIRDKDQS 579

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 155 VVNPETGESVKR---DGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH 211
           V++P TGE +     +GV   +        T+    D+          G+++TGD     
Sbjct: 455 VLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKD 514
Query: 212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSL 271
            DGY+ I  R  DV+   G  + +AE+E+ +     V E AVV   D   G+   AFV L
Sbjct: 515 KDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVL 574
Query: 272 KR--------DLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLR 323
           K         D EL  +  +K ++   R  +  +  P+ ++  ++LPKT +GKI + +LR
Sbjct: 575 KNKSSWSTATDDEL--QDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILR 632
Query: 324 E 324
           +
Sbjct: 633 K 633

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
           +++GD      DGY  I  R  DV+   G  + +AE+ES L +   + EAAVV  P    
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
           G+   A+V+L    E + +    E+  + R  +     P  + +++ LPKT +GKI + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRI 614
Query: 322 LREFA 326
           LR+ A
Sbjct: 615 LRKIA 619

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
           +++GD      DGY  I  R  DV+   G  + +AE+ES L +   + EAAVV  P    
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
           G+   A+V+L    E + +    E+  + R  +     P  + +++ LPKT +GKI + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRI 614
Query: 322 LREFA 326
           LR+ A
Sbjct: 615 LRKIA 619

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
           +++GD      DGY  I  R  DV+   G  + +AE+ES L +   + EAAVV  P    
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
           G+   A+V+L    E + +    E+  + R  +     P  + +++ LPKT +GKI + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRI 614
Query: 322 LREFA 326
           LR+ A
Sbjct: 615 LRKIA 619

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
           +++GD      DGY  I  R  DV+   G  + +AE+ES L +   + EAAVV  P    
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
           G+   A+V+L    E + +    E+  + R  +     P  + +++ LPKT +GKI + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRI 614
Query: 322 LREFA 326
           LR+ A
Sbjct: 615 LRKIA 619

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
           +++GD      DGY  I  R  DV+   G  + +AE+ES L +   + EAAVV  P    
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
           G+   A+V+L    E + +    E+  + R  +     P  + +++ LPKT +G I + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRI 614
Query: 322 LREFA 326
           LR+ A
Sbjct: 615 LRKIA 619

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
           +++GD      DGY  I  R  DV+   G  + +AE+ES L +   + EAAVV  P    
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
           G+   A+V+L    E + +    E+  +    +     P  + +++ LPKT +GKI + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRI 614
Query: 322 LREFA 326
           LR+ A
Sbjct: 615 LRKIA 619

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 11/161 (6%)
Query: 170 SLGEVVLRGGCVTVGYFKDKEAT-RRCISD-------NGWFYTGDIGVMHADGYVEIKDR 221
           +LGE+ + G  +  GY      T  R ++D          + TGD+    ADG +E   R
Sbjct: 408 ALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
Query: 222 SKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKP 281
           + D +   G  +   EVE+ L    AV +AAV+A+      +   A+V  +R       P
Sbjct: 468 ADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAER---ADAPP 524
Query: 282 TEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
              E+  +    LP YMVP + V  +ELP+T  GK+ +  L
Sbjct: 525 DAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRAL 565

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
           +++GD      DGY  I  R  DV+   G  + +AE+ES L +   + EAAVV  P    
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
           G+   A+V+L    E + +    E+  +    +     P  + +++ LPKT +GKI + +
Sbjct: 556 GQAIYAYVTLNHGEEPSPE-LYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRI 614
Query: 322 LREFA 326
           LR+ A
Sbjct: 615 LRKIA 619

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 170 SLGEVVLRGGCVTVGYFKDKEATRRCISDNGW------FYTGDIGVMHADGYVEIKDRSK 223
           ++GE+ + G  V+ GY    + T+    +N +      + TGD+     DG +E   R  
Sbjct: 802 AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRID 861
Query: 224 DVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTE 283
           D +   G  I   E+E  L     V +A VVA           A++  +  L      + 
Sbjct: 862 DQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL------SA 915
Query: 284 KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
           +++  + + +LP YMVP+   F +ELP T+ GK+ K LL
Sbjct: 916 EDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGW------FYTGDIGVMHADGYVEIKDRSKDV 225
           GE+ + G  +  GY+K  E T +   DN +      + TGD     +DG +E   R  + 
Sbjct: 373 GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQ 432
Query: 226 IISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKE 285
           +   G  +   EVES+L     ++E AV    D       CA+   ++ + L      ++
Sbjct: 433 VKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPL------EQ 486
Query: 286 IIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
           + ++    LP YM+P   +  +++P TS GKI +  L E
Sbjct: 487 LRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 525

>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRC---ISDNGWFYTGDIGVMHADGYVEIKDRSKDVIIS 228
           GE+V+ G  V+VGY    E T +    I     + TGD G +  +G +    R    I  
Sbjct: 346 GEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIKL 404
Query: 229 GGENICSAEVESVLYSITAVNEAAVVA-----RPDMFWGEIPCAFVSLKRDLELTKKPTE 283
            G  +   E+E  L + + V  A +V      + D     +     S +++ +LT    +
Sbjct: 405 HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSA-IK 463
Query: 284 KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI-QKYLLRE 324
           KE+ E    RLP YM+PRK ++   +P T  GK+ +K LL E
Sbjct: 464 KELNE----RLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSE 501

>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRC---ISDNGWFYTGDIGVMHADGYVEIKDRSKDVIIS 228
           GE+V+ G  V+VGY    E T +    I     + TGD G +  +G +    R    I  
Sbjct: 346 GEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIKL 404
Query: 229 GGENICSAEVESVLYSITAVNEAAVVA-----RPDMFWGEIPCAFVSLKRDLELTKKPTE 283
            G  +   E+E  L + + V  A +V      + D     +     S +++ +LT    +
Sbjct: 405 HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSA-IK 463
Query: 284 KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKI-QKYLLRE 324
           KE+ E    RLP YM+PRK ++   +P T  GK+ +K LL E
Sbjct: 464 KELNE----RLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSE 501

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 11/184 (5%)
Query: 148 VGLAEVDV---VNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCI--SDNGWF 202
           VG A+ D+   +  E G+ +       GE+V+ G  V+ GY  + E T +     +  W 
Sbjct: 320 VGFAKPDMNIFIMDEEGQPLPEG--EKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWA 377
Query: 203 Y-TGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA-RPDMF 260
           Y TGD G +  DG +  + R    I   G  +   E+E  +     V  A V+  +P+  
Sbjct: 378 YRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGT 436
Query: 261 WGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKY 320
              +  A V  + + E   + T   I +   A LP YM+PRK ++ + +  T+ GKI + 
Sbjct: 437 VEYLIAAIVPEEHEFEKEFQLTSA-IKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRK 495
Query: 321 LLRE 324
            + E
Sbjct: 496 RIGE 499

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 171 LGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGG 230
           +G + + G  +  GYF D + ++  I+  GW  TGD+G +  DGY+ +  R KD+II  G
Sbjct: 410 VGHICISGPSLXSGYFGD-QVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRG 467
Query: 231 ENICSAEVESV 241
            NI   ++E +
Sbjct: 468 RNIWPQDIEYI 478

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 172 GEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKD 220
           GEVV++   +   Y+   EATR    DNGWF TGDIG +  +GY+ IKD
Sbjct: 349 GEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKD 396

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 73/179 (40%), Gaps = 23/179 (12%)
Query: 164 VKRDGVSL-----GEVVLRGGCVTVGYFKDKEATRRCI---SDNGWFYTGDIGVMHADGY 215
           +  DG  L     GE+++ G  V+ GY  + E T            ++TGDIG +  D  
Sbjct: 336 IDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNI 395
Query: 216 VEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG-EIPCAFVSLK-- 272
           +    R    I   G  I   +V   L     V  A  V R +     +   A++ +K  
Sbjct: 396 LLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDG 455
Query: 273 ------RDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQ-KYLLRE 324
                 R+LELTK      I    +  +  YM+P K ++ + LP T  GKI  K L+ E
Sbjct: 456 VKERFDRELELTKA-----IKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINE 509

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 27/193 (13%)
Query: 150 LAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC----ISDNG----W 201
           + EV +++P+T   +  D   +GE+ ++   V  GY+   E TR      I D+     +
Sbjct: 380 IQEVKIIDPDT--LIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIY 437
Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVE-----SVLYSITAVNEAAVVAR 256
             TGD+G +H +  + +  R KD+II  G+N    ++E     S L+ +     A V+  
Sbjct: 438 LRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLXHSPLHHVLGKCAAFVIQE 496
Query: 257 PDMFWGEIPCAFVSLKRDLELTKKPTEKEIIE--YCRARLPRY---MVPRKVVFSEELPK 311
              +   + C   +   D ++ +     EI E  Y   +L  +   ++P K       P 
Sbjct: 497 EHEYKLTVXCEVKNRFXD-DVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAX-----PH 550
Query: 312 TSTGKIQKYLLRE 324
           T++GKI++   R+
Sbjct: 551 TTSGKIRRNFCRK 563

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	6e-93
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-38
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	1e-73
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-21
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	5e-73
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	8e-17
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	1e-72
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	7e-22
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	6e-71
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	5e-23
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	4e-69
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-21
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-66
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	4e-14
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	5e-66
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-18
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-65
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-20
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-63
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	7e-20
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	6e-63
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	2e-14
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-60
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-13
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-59
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-15
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	3e-58
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	7e-14
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	4e-58
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	6e-14
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	6e-53
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	6e-12
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	5e-46
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-05
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	9e-44
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	4e-05
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	7e-25
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	4e-04
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	6e-24
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-22
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	2e-22
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-13
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-12
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-11
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	8e-11
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	2e-10
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	8e-10
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	1e-09
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  285 bits (733), Expect = 6e-93
 Identities = 80/194 (41%), Positives = 114/194 (58%), Gaps = 6/194 (3%)

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR 194
           ++  LKA+ G+    +  + V + E G  V +DG +LGEV L+G  +T GY+ ++EATR 
Sbjct: 349 EKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATRS 406

Query: 195 CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVV 254
            ++ +G+F TGDI V   +GYVEIKDR KD+I SGGE I S ++E+ L     V EAAVV
Sbjct: 407 ALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV 466

Query: 255 ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTST 314
           A P   W E P A V  + +    K   E+      +A   ++ +P   VF+EE+P+TS 
Sbjct: 467 AIPHPKWQERPLAVVVPRGE----KPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSA 522

Query: 315 GKIQKYLLREFAKS 328
           GK  K  LRE  K+
Sbjct: 523 GKFLKRALREQYKN 536

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  142 bits (360), Expect = 2e-38
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 6   LPNSANSTPLTTLGFLERAAAAYTDCPSLVYNNT----TYTWSETHRRCLQVASSLSSVG 61
            P++     L    FLERAAA +     +   +T      T++E ++R  ++   L ++G
Sbjct: 9   FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALG 68

Query: 62  IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHL 121
           +  G  V+ +  N     E  F VP  GA+L+  N RL    ++ +L H+E K++  D  
Sbjct: 69  VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPN 128

Query: 122 HTYLLLEALSLFP 134
              L+        
Sbjct: 129 LLPLVEAIRGELK 141

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  234 bits (600), Expect = 1e-73
 Identities = 67/261 (25%), Positives = 115/261 (44%), Gaps = 42/261 (16%)

Query: 83  FGVP-MSGAILNNINTRLDAHTLSVL----------LQHSESKLVFVDHLHTYLLLEALS 131
             VP     ++       + + L  +          +  +  +   +   +++ + E  S
Sbjct: 256 SLVPQTLNWLMQQ--GLHEPYNLQKILLGGAKLSATMIETALQY-NLPIYNSFGMTETCS 312

Query: 132 ----LFPQRARLKARQGVKTVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTV 183
                 P+    +      TVG+     +V + NP             GE++++G  V  
Sbjct: 313 QFLTATPEMLHARPD----TVGMPSANVDVKIKNPNKEG--------HGELMIKGANVMN 360

Query: 184 GYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLY 243
           GY    + T     +NG+F TGDI  +  +GYV I DR KD+IISGGENI   ++E+V  
Sbjct: 361 GYLYPTDLTG--TFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAK 418

Query: 244 SITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKV 303
               +++A  V  PD  WG++P  +   + D+      ++ ++I Y    L +Y VP+  
Sbjct: 419 QFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------SKAQLIAYLSKHLAKYKVPKHF 472

Query: 304 VFSEELPKTSTGKIQKYLLRE 324
              + LP TSTGK+Q+  L  
Sbjct: 473 EKVDTLPYTSTGKLQRNKLYR 493

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score = 93.4 bits (233), Expect = 2e-21
 Identities = 20/152 (13%), Positives = 51/152 (33%), Gaps = 14/152 (9%)

Query: 17  TLG-FLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 75
           +L  +L + A       ++     +YT+   +     +A  L      +   V +   N 
Sbjct: 2   SLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNS 58

Query: 76  PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQ 135
                L     ++   +  INTRL  + ++  ++  + +L+F              L  +
Sbjct: 59  IQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL----------PLELR 108

Query: 136 RARLKARQGVKTVGLAEVDVVNPETGESVKRD 167
             ++ +   ++  G         +    ++ D
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYD 140

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  233 bits (596), Expect = 5e-73
 Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 10/182 (5%)

Query: 147 TVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
            VG A       V +PETG+ + R  +  G + ++G  V  GY++  E T+    D+G+F
Sbjct: 321 AVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKGYWRMPEKTKSEFRDDGFF 378

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
            TGD+G +   GYV I  R KD++I+GG N+   E+ES + ++  V E+AV+  P   +G
Sbjct: 379 ITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFG 438

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
           E   A V   +   +     E +++     +L ++ +P+KV+F ++LP+ + GK+QK +L
Sbjct: 439 EGVTAVVVRDKGATI----DEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVL 494

Query: 323 RE 324
           RE
Sbjct: 495 RE 496

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 79.9 bits (198), Expect = 8e-17
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 3/147 (2%)

Query: 23  RAAAAYTDCPSLVY-NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYEL 81
                     ++        +++E   R  +VA+ L + G+Q G  V+           L
Sbjct: 10  FDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVL 69

Query: 82  QFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKA 141
                 +G +   +NT    H L   +  +E K+V  D      +    +          
Sbjct: 70  YLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLG 129

Query: 142 RQGVKTVGLAEVDVVNPETGESVKRDG 168
             G  +  L +      E   ++ R  
Sbjct: 130 PDGRGS--LTDAAAGASEAFATIDRGA 154

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  232 bits (595), Expect = 1e-72
 Identities = 84/200 (42%), Positives = 117/200 (58%), Gaps = 18/200 (9%)

Query: 129 ALSLFPQRARLKARQGVKTVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVG 184
              L  + A  KA     + G A    +V V   + G   +  G   GEVV++   +   
Sbjct: 324 GTLLLSEDALRKAG----SAGRATMFTDVAVRGDD-GVIREH-GE--GEVVIKSDILLKE 375

Query: 185 YFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYS 244
           Y+   EATR    DNGWF TGDIG +  +GY+ IKDR KD+IISGGEN+  AE+ESV+  
Sbjct: 376 YWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIG 434

Query: 245 ITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVV 304
           +  V+E AV+  PD  WGEI  A V   ++     + +E++I+EYC  RL RY +P+KV+
Sbjct: 435 VPGVSEVAVIGLPDEKWGEIAAAIVVADQN-----EVSEQQIVEYCGTRLARYKLPKKVI 489

Query: 305 FSEELPKTSTGKIQKYLLRE 324
           F+E +P+  TGKI K +LRE
Sbjct: 490 FAEAIPRNPTGKILKTVLRE 509

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score = 94.9 bits (237), Expect = 7e-22
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 1   MEQLLLPNSANSTPLTTLG-FLERAAAAYTDCPSLV--YNNTTYTWSETHRRCLQVASSL 57
           M      +  +   +  +G  L + A       + V    +   T+++ +    + A  L
Sbjct: 1   MAHHHHHHVDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVL 60

Query: 58  SSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF 117
           +++GI +G  V+++ PN      L +G    GA+   INTRL A  +S +L  S SK+V 
Sbjct: 61  TALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI 120

Query: 118 VDHLHTYLLLEALSLFPQRARLKARQG 144
                  ++    +       +    G
Sbjct: 121 YGAPSAPVIDAIRAQADPPGTVTDWIG 147

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  227 bits (582), Expect = 6e-71
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 14/184 (7%)

Query: 147 TVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
           + G       V VV+ E    +    V  GE+VLRG  V  GY+ +  AT+    + GW 
Sbjct: 322 SAGRPLFWRTVAVVDAE-DRPLPPGEV--GEIVLRGPTVFKGYWNNAAATQHAFRN-GWH 377

Query: 203 YTGDIGVMHADGYVEIKDRS--KDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMF 260
           +TGD+G   ADGY+    R+  K++I +GGEN+  AEVE  L    A+ +A V+  PD  
Sbjct: 378 HTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQ 437

Query: 261 WGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKY 320
           W E   A    K    +        + E+  + + RY  P+ VVF E LPK + G I + 
Sbjct: 438 WSEAIKAVCVCKPGESI----AADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRA 493

Query: 321 LLRE 324
            ++ 
Sbjct: 494 AVKT 497

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score = 98.4 bits (246), Expect = 5e-23
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 1/153 (0%)

Query: 17  TLG-FLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 75
           TL     R AA + D  + + +    T  +   R  ++AS L   G+  G  V++++ N 
Sbjct: 7   TLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNC 66

Query: 76  PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQ 135
             M EL   V + GAIL  +N RL+A  ++ +L      +V     +  ++   L     
Sbjct: 67  SEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG 126

Query: 136 RARLKARQGVKTVGLAEVDVVNPETGESVKRDG 168
             +  A            D+ +     + +   
Sbjct: 127 VKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGA 159

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  223 bits (570), Expect = 4e-69
 Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 15/186 (8%)

Query: 147 TVGLA----EVDVVNPETG--ESVKRDGVSLGEVVLRGG-CVTVGYFKDKEATRRCISDN 199
           T        EV +V    G  E V       GE+++       VGY    +AT   +  +
Sbjct: 322 TEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLNQPQATAEKL-QD 378

Query: 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM 259
           GW+ T D+ V   +G V I  R  D+IISGGENI  +E+E VL +   V E  V+   D 
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438

Query: 260 FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRA-RLPRYMVPRKVVFSEELPKTSTGKIQ 318
            WG+   A V  +    L    +   +  +CR+  L  +  P++    ++LPK +  K+ 
Sbjct: 439 RWGQSVTACVVPRLGETL----SADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVL 494

Query: 319 KYLLRE 324
           +  L +
Sbjct: 495 RRQLVQ 500

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 93.8 bits (234), Expect = 2e-21
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 16  TTLG-FLERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVA 72
            T+   L RAA    D  +L         T +E   R   VA+ L + G++    V+VVA
Sbjct: 2   QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVA 61

Query: 73  PNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDH 120
           PN   +      +   GA+   +N RL +  L+ L++  E     +  
Sbjct: 62  PNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAV 109

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  216 bits (553), Expect = 1e-66
 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 8/183 (4%)

Query: 147 TVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
           TVG+     E+ +V  +       DG S+GE+ +RG  +   Y    +AT    +++G+F
Sbjct: 325 TVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFF 384

Query: 203 YTGDIGVMHADGYVEIKDR-SKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
            TGD+ V   DGYV I  R + D+I SGG  I + E+E+ L     V EAAV   PD   
Sbjct: 385 RTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDL 444

Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
           GE   A++           P    + ++  ARL  +  PR V + + +P+   GKI K  
Sbjct: 445 GERIVAWIVPADP---AAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRA 501

Query: 322 LRE 324
           L  
Sbjct: 502 LNR 504

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 6/114 (5%)

Query: 7   PNSANSTPLTTL-GFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRG 65
                S   +           A  D P+L +   + T++E        A       I   
Sbjct: 14  LVPRGSHMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAG-----RIGGA 68

Query: 66  HVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119
             V+V A              ++G     +N +     L+ +L  S   LV   
Sbjct: 69  GRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAP 122

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  217 bits (555), Expect = 5e-66
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 15/186 (8%)

Query: 145 VKTVGLA-----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDN 199
           + T G       EV V + E G  + +  V  G ++ RG     GY+K  +        N
Sbjct: 354 IHTQGYPMCPDDEVWVADAE-GNPLPQGEV--GRLMTRGPYTFRGYYKSPQHNASAFDAN 410

Query: 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM 259
           G++ +GD+  +  +GY+ ++ R KD I  GGE I + E+E++L    AV  AA+V+  D 
Sbjct: 411 GFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDE 470

Query: 260 FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR-LPRYMVPRKVVFSEELPKTSTGKIQ 318
             GE  CA++ +K  L         ++  + R + +  + +P +V   + LP T+ GK+ 
Sbjct: 471 LMGEKSCAYLVVKEPL------RAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVD 524

Query: 319 KYLLRE 324
           K  LR+
Sbjct: 525 KKQLRQ 530

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 3/107 (2%)

Query: 17  TLG-FLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 75
            L   L R AA+  D  +++      ++ E ++    +A SL   GI+ G    V   NV
Sbjct: 28  PLTDILTRHAAS--DSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNV 85

Query: 76  PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLH 122
             +Y   F +   G              L+      E  L+  D  H
Sbjct: 86  AELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQH 132

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  214 bits (548), Expect = 1e-65
 Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 14/186 (7%)

Query: 145 VKTVGLA-----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDN 199
           V T G       E  V +      VK      G ++ RG     GY+K +E      +++
Sbjct: 350 VNTQGKPMSPYDESRVWDD-HDRDVKPGET--GHLLTRGPYTIRGYYKAEEHNAASFTED 406

Query: 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM 259
           G++ TGDI  +  DGY+ ++ R+KD I  GGE + + EVE+ L +  AV++AA+V+ PD 
Sbjct: 407 GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQ 466

Query: 260 FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR-LPRYMVPRKVVFSEELPKTSTGKIQ 318
           F GE  C F+  + +      P   E+  + R R L  Y +P +V F E  P+T  GK+ 
Sbjct: 467 FLGERSCVFIIPRDE-----APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVS 521

Query: 319 KYLLRE 324
           K  LRE
Sbjct: 522 KKALRE 527

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score = 90.7 bits (226), Expect = 2e-20
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 17  TLG-FLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 75
           T G  L   AA Y D  ++   NT +++ E   R  ++A+    +GIQ+   V V  PN+
Sbjct: 26  TFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNI 85

Query: 76  PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLH 122
              +E+ F +   GA+         +  ++   + +E+    +   +
Sbjct: 86  KEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAY 132

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  209 bits (534), Expect = 2e-63
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 12/185 (6%)

Query: 145 VKTVGLA-----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDN 199
             T G       E+ +V+      V    +  G +  RG     GY++  E   +   ++
Sbjct: 359 FTTQGRPISSDDEIKIVDE-QYREVPEGEI--GMLATRGPYTFCGYYQSPEHNSQVFDED 415

Query: 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM 259
            ++Y+GD+     DG + +  R KD I  GGE I S E+E ++     V  AA+VA  D 
Sbjct: 416 NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDE 475

Query: 260 FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQK 319
            +GE  CAF+  + + EL                + +Y +P ++   E LP T+ GK+ K
Sbjct: 476 QFGEKSCAFIVSR-NPELK---AVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDK 531

Query: 320 YLLRE 324
             LR 
Sbjct: 532 KQLRS 536

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 89.1 bits (222), Expect = 7e-20
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 1/107 (0%)

Query: 17  TLG-FLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 75
            L   L     ++    +++      ++ E  R    +A+ L+  G+ +G    V  PNV
Sbjct: 31  PLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNV 90

Query: 76  PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLH 122
              Y + F +  +G ++ N       + L+  ++  + KL+     H
Sbjct: 91  AEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQH 137

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  207 bits (530), Expect = 6e-63
 Identities = 65/186 (34%), Positives = 104/186 (55%), Gaps = 12/186 (6%)

Query: 147 TVGL----AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD---- 198
           T G+     E+ V++ E G  +       GE+V+RG  +  GY+K ++  + C       
Sbjct: 357 TQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKENQECWWYDEKG 414

Query: 199 NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPD 258
             +F TGD+G +  +G++  +DR K+VI   G  I   E+E++L    AV + AV+ +PD
Sbjct: 415 RKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPD 474

Query: 259 MFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQ 318
              GE+P AF+ LK +        E++IIE+ R R+  Y   R+V F EELP+T++GK+ 
Sbjct: 475 EEAGEVPKAFIVLKPEYRGK--VDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLL 532

Query: 319 KYLLRE 324
           + LLRE
Sbjct: 533 RRLLRE 538

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 19/144 (13%)

Query: 14  PLTTLG-FLERAAAAYTDCPSLVYNNT--------TYTWSETHRRCLQVASSLSSVGIQR 64
           P  +L   ++ AA  + +  +++            +  + E      ++AS +S  G+++
Sbjct: 17  PKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRK 76

Query: 65  GHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY 124
           G  V V  PN        + +    A    IN    +  L  +L  SE+  + V      
Sbjct: 77  GEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHS---- 132

Query: 125 LLLEALSLFPQRARLKARQGVKTV 148
                  L+     +  + GV+ V
Sbjct: 133 ------MLYENFKPVLEKTGVERV 150

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  201 bits (514), Expect = 1e-60
 Identities = 67/187 (35%), Positives = 100/187 (53%), Gaps = 10/187 (5%)

Query: 147 TVGL----AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
             G     AE+ +V+PETG S+ R+    GE+ +RG  +  GY  D EAT R I   GW 
Sbjct: 356 ACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDKEGWL 413

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
           +TGDIG +  D  + I DR K++I   G  +  AE+E++L +   +++AAVV   D   G
Sbjct: 414 HTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG 473

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
           E+P AFV      +     TE EI +Y   ++  Y   ++V F E +PK  +GKI +  L
Sbjct: 474 EVPVAFVVKSEKSQA----TEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNL 529

Query: 323 REFAKSV 329
           +E    +
Sbjct: 530 KEKLAGI 536

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 11  NSTPLTTLGFLERAAAAYTDCPSLV--YNNTTYTWSETHRRCLQVASSLSSVGIQRGHVV 68
            + PL +  ++    + ++  P L+   N   YT+++      +VAS L+ +GIQ+G V+
Sbjct: 20  KNLPLHS--YVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVI 77

Query: 69  SVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118
            +  P+ P       G    GAI+   N       L+   + S +KL+  
Sbjct: 78  MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLIT 127

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  198 bits (506), Expect = 1e-59
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 10/182 (5%)

Query: 147 TVGLA----EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
           T G      E+++ + E G +V    V  G++ ++G    V Y+ ++E +R       W 
Sbjct: 353 TTGRPVPGYEIELRD-EAGHAVPDGEV--GDLYIKGPSAAVMYWNNREKSRATFLG-EWI 408

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
            +GD      +G      RS D++   G+ +   EVE VL    AV EAAVV        
Sbjct: 409 RSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG-L 467

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
               AFV LKR+   ++    +E+  + + RL  +  PR +VF ++LPKT+TGKIQ++ L
Sbjct: 468 VKTRAFVVLKREFAPSEI-LAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKL 526

Query: 323 RE 324
           RE
Sbjct: 527 RE 528

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 21/115 (18%), Positives = 44/115 (38%)

Query: 20  FLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY 79
           +L R         + + +  + T+ E   R  + AS+L ++G+     + +V  +  ++ 
Sbjct: 28  YLFRLNETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALP 87

Query: 80  ELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP 134
               G   +G +    NT L       +L HS ++ V         + +AL    
Sbjct: 88  VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAE 142

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  195 bits (499), Expect = 3e-58
 Identities = 62/186 (33%), Positives = 94/186 (50%), Gaps = 11/186 (5%)

Query: 147 TVGL----AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
            VG      E  VV+ +TG+++  +    GE+ +RG  +  GY  + EAT   I  +GW 
Sbjct: 361 AVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWL 418

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
           ++GDI     D +  I DR K +I   G  +  AE+ES+L     + +A V   PD   G
Sbjct: 419 HSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAG 478

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYL 321
           E+P A V L+    +    TEKEI++Y  +++      R  VVF +E+PK  TGK+    
Sbjct: 479 ELPAAVVVLEHGKTM----TEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARK 534

Query: 322 LREFAK 327
           +RE   
Sbjct: 535 IREILI 540

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 71.1 bits (175), Expect = 7e-14
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 6/127 (4%)

Query: 14  PLTTLG-FLERAAAAYTDCPSLV-----YNNTTYTWSETHRRCLQVASSLSSVGIQRGHV 67
              T G  L +A   Y   P  +     +     T++E     +++A ++   G+   H 
Sbjct: 18  EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHR 77

Query: 68  VSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLL 127
           + V + N    +    G    G  +   N   +   L   +  S+  +VFV       +L
Sbjct: 78  IVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKIL 137

Query: 128 EALSLFP 134
                 P
Sbjct: 138 NVQKKLP 144

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  195 bits (497), Expect = 4e-58
 Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 11/187 (5%)

Query: 147 TVGL----AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
             G      +  V++ +T +S+  +    GEV ++G  +  GY  + EAT+  I + GW 
Sbjct: 363 ASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEATKELIDEEGWL 420

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
           +TGDIG    + +  I DR K +I   G  +  AE+ESVL    ++ +A V   PD   G
Sbjct: 421 HTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAG 480

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYL 321
           E+P A V L+    +    TEKE+++Y  +++      R  V F +E+PK  TGKI    
Sbjct: 481 ELPGAVVVLESGKNM----TEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRA 536

Query: 322 LREFAKS 328
           +RE  K 
Sbjct: 537 IREILKK 543

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 71.5 bits (176), Expect = 6e-14
 Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 5/110 (4%)

Query: 14  PLTTLG-FLERAAAAYTDCPSLVY----NNTTYTWSETHRRCLQVASSLSSVGIQRGHVV 68
              + G  L +    Y    ++ +        Y+++E   +   +  +L + G+     +
Sbjct: 21  EEGSAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRI 80

Query: 69  SVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118
           ++ + N    +         G  +   N       L   L  S+  +VF 
Sbjct: 81  ALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFS 130

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  185 bits (473), Expect = 6e-53
 Identities = 62/181 (34%), Positives = 99/181 (54%), Gaps = 14/181 (7%)

Query: 147 TVGL----AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF 202
             G     AE+ +V+P+TG+S+ R+    GE+ +RG  +  GY  +  AT   I  +GW 
Sbjct: 403 ACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLNNPAATAETIDKDGWL 460

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
           +TGDIG++  D  + I DR K++I   G  +  AE+E++L     + + AVVA  +   G
Sbjct: 461 HTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAG 520

Query: 263 EIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLL 322
           E+P AFV   +D EL    +E ++ ++   ++  Y    KV F+E +PK  +GKI    L
Sbjct: 521 EVPVAFVVKSKDSEL----SEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKI----L 572

Query: 323 R 323
           R
Sbjct: 573 R 573

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 4/110 (3%)

Query: 11  NSTPLTTLGFLERAAAAYTDCPSLVYNNT--TYTWSETHRRCLQVASSLSSVGIQRGHVV 68
           N   L    ++ +  + +   P L+   T   YT+S+ H    Q+A++   +G+ +  VV
Sbjct: 59  NHLSLHD--YIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVV 116

Query: 69  SVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV 118
            ++ PN P            GA     N       ++   + S +KL+  
Sbjct: 117 MLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIIT 166

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  163 bits (414), Expect = 5e-46
 Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 10/179 (5%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGG-----CVTVGYFKDKEATRRCISDNGWFYTGD 206
           +V +++ + G  +       G++ +R        +  GY  + + T   I    ++  GD
Sbjct: 384 DVQIIDDK-GNVLPPGTE--GDIGIRVKPIRPIGIFSGYVDNPDKTAANIRG-DFWLLGD 439

Query: 207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPC 266
            G+   DGY +   R+ D+I S G  I  +EVE+ L    AV E AV++ PD   GE+  
Sbjct: 440 RGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVK 499

Query: 267 AFVSLKRDLELTKKP-TEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
           AFV L             KE+ ++ ++    Y  PRK+ F   LPKT TGKIQ+  LR+
Sbjct: 500 AFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRD 558

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 1/97 (1%)

Query: 39  TTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINT 97
             + + E      Q A+ LS + G+QRG  V+VV P VP  + +  G   +G I      
Sbjct: 72  LMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTI 131

Query: 98  RLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP 134
           ++ +  +   LQ S++K +         +    S  P
Sbjct: 132 QMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP 168

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  157 bits (399), Expect = 9e-44
 Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 10/178 (5%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGG-----CVTVGYFKDKEATRRCISDNGWFYTGD 206
           ++++++ + G   +      GE+V+         + V Y KD E T     D G+++TGD
Sbjct: 403 KIELMDRD-GRLCEVGEE--GEIVINTMEGKPVGLFVHYGKDPERTEETWHD-GYYHTGD 458

Query: 207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPC 266
           +  M  DGY+    R+ D+I + G  +   EVES L    AV E A+   PD   G++  
Sbjct: 459 MAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIK 518

Query: 267 AFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
           A + L +D   +    + E+ ++ +     Y  PR + F  ELPKT +GKI++  +R+
Sbjct: 519 ATIVLTKDYTPSDS-LKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRD 575

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 13/104 (12%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 21  LERAAAAYTDCPSLVYNN-----TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 75
           ++  A    +  ++++ +       +T+ +      + A+     GI +G  V +   + 
Sbjct: 62  VDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSR 121

Query: 76  PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119
              +    G+   GAI       L    +   ++ +  K++   
Sbjct: 122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCI 165

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  101 bits (253), Expect = 6e-24
 Identities = 41/224 (18%), Positives = 78/224 (34%), Gaps = 28/224 (12%)

Query: 123 TYLLLEALSLFPQRARLKARQGVKTVGLA-------EVDVVNPETGESVKRDGVSLGEVV 175
             L L        R          +  L        EV +++P+T      D V  GE+ 
Sbjct: 346 KTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQV--GEIW 403

Query: 176 LRGGCVTVGYFKDKEATRRCI--------SDNGWFYTGDIGVMHADGYVEIKDRSKDVII 227
           ++   V  GY+   E TR               +  TGD+G +H +  + +  R KD+II
Sbjct: 404 VQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLII 462

Query: 228 SGGENICSAEVESVLYSITAV---NEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEK 284
             G+N    ++E  L          + A     +    ++        R ++      + 
Sbjct: 463 IYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMD---DVAQD 519

Query: 285 EIIEYCRARLPR--YMVPRKVVF--SEELPKTSTGKIQKYLLRE 324
            +       +     +    +V    + +P T++GKI++   R+
Sbjct: 520 NLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRK 563

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 97.3 bits (243), Expect = 2e-22
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 21/191 (10%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLR----GGCVTVGYFKDKEATRRCISD-----NGWF 202
           +  V++P TGE +       G + ++        T+  +K+ +   R +        G++
Sbjct: 452 DAVVLDPNTGEELNTSHAE-GVLAVKAAWPSFARTI--WKNHD---RYLDTYLNPYPGYY 505

Query: 203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWG 262
           +TGD      DGY+ I  R  DV+   G  + +AE+E+ +     V E AVV   D   G
Sbjct: 506 FTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTG 565

Query: 263 EIPCAFVSLKRDLELTKKPTE------KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGK 316
           +   AFV LK     +    +      K ++   R  +  +  P+ ++  ++LPKT +GK
Sbjct: 566 QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGK 625

Query: 317 IQKYLLREFAK 327
           I + +LR+   
Sbjct: 626 IMRRILRKILA 636

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 96.9 bits (242), Expect = 2e-22
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 1/128 (0%)

Query: 200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDM 259
             +++GD      DGY  I  R  DV+   G  + +AE+ES L +   + EAAVV  P  
Sbjct: 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 553

Query: 260 FWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQK 319
             G+   A+V+L    E + +    E+  + R  +     P  + +++ LPKT +GKI +
Sbjct: 554 IKGQAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 612

Query: 320 YLLREFAK 327
            +LR+ A 
Sbjct: 613 RILRKIAA 620

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 69.1 bits (170), Expect = 4e-13
 Identities = 20/81 (24%), Positives = 33/81 (40%)

Query: 237 EVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPR 296
           E+E  +     V  A V+        E   A +  +      +      I +   A LP 
Sbjct: 412 EIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPA 471

Query: 297 YMVPRKVVFSEELPKTSTGKI 317
           YM+PRK ++ + +  T+ GKI
Sbjct: 472 YMIPRKFIYQDHIQMTANGKI 492

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 21/81 (25%), Positives = 33/81 (40%)

Query: 237 EVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPR 296
           E+E  L + + V  A +V        +   A V         +      I +    RLP 
Sbjct: 413 EIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPN 472

Query: 297 YMVPRKVVFSEELPKTSTGKI 317
           YM+PRK ++   +P T  GK+
Sbjct: 473 YMIPRKFMYQSSIPMTPNGKV 493

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 237 EVESVLYSITAVNEAAVVARPDMFWGEIP--CAFVSLKRDLELTKKPTE---KEIIEYCR 291
           +V   L     V  A  V R +    ++    A++ +K  ++          K I    +
Sbjct: 417 DVSQQLNQSPMVASAVAVPRYNKE-HKVQNLLAYIVVKDGVKERFDRELELTKAIKASVK 475

Query: 292 ARLPRYMVPRKVVFSEELPKTSTGKI 317
             +  YM+P K ++ + LP T  GKI
Sbjct: 476 DHMMSYMMPSKFLYRDSLPLTPNGKI 501

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 61.7 bits (151), Expect = 8e-11
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 237 EVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPR 296
           EVES+L     ++E AV    D       CA+   ++ +        +++ ++    LP 
Sbjct: 444 EVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI------PLEQLRQFSSEELPT 497

Query: 297 YMVPRKVVFSEELPKTSTGKI 317
           YM+P   +  +++P TS GKI
Sbjct: 498 YMIPSYFIQLDKMPLTSNGKI 518

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 14/76 (18%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCI-----------SDNG 200
            V +V+ +T        V  GE+ + G  V  GY++  + + R              +  
Sbjct: 403 IVRIVDSDTCIECPDGTV--GEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGP 460

Query: 201 WFYTGDIGVMHADGYV 216
           W  TGD G +  DG +
Sbjct: 461 WLRTGDSGFVT-DGKM 475

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 237 EVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPR 296
           E+E  L     V +A VVA           A++  +         + +++  + + +LP 
Sbjct: 875 EIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ------LSAEDVKAHLKKQLPA 928

Query: 297 YMVPRKVVFSEELPKTSTGKI 317
           YMVP+   F +ELP T+ GK+
Sbjct: 929 YMVPQTFTFLDELPLTTNGKV 949

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 11/92 (11%)

Query: 237 EVESVLYSITAVNEAAVVARPDMFWGEIP--CAFV--------SLKRDLELTKKPTEKEI 286
           EV  V+ S++  +   V    +          +FV           R +    K     +
Sbjct: 441 EVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSL 500

Query: 287 IEYCRARLPRYMVPRKVVFSEELP-KTSTGKI 317
            + C   LP YMVP  ++    +P + ++ K 
Sbjct: 501 RQACEQTLPAYMVPDFIIPISFIPLRDTSAKT 532

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 56.4 bits (137), Expect = 5e-09
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 11/81 (13%)

Query: 237 EVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPR 296
            +E        + + A++ R      ++ CA+                   +    +LP 
Sbjct: 433 ALEQRFRRQPGILDCALLVRERNGVKQLLCAWT-----------GKADASPQALLRQLPT 481

Query: 297 YMVPRKVVFSEELPKTSTGKI 317
           +  P   V  E LP T+ GK+
Sbjct: 482 WQRPHACVRVEALPLTAHGKL 502

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 39/248 (15%), Positives = 74/248 (29%), Gaps = 55/248 (22%)

Query: 91  ILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFPQRARLKARQGVKTVGL 150
           IL  + TR        L   + + +    H  T    E  SL  +          +   L
Sbjct: 268 IL--LTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL------DCRPQDL 318

Query: 151 -AEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFK--DKEATRRCISDNGWFYTGD 206
             EV   NP          +S+  E  +R G  T   +K  + +     I          
Sbjct: 319 PREVLTTNPRR--------LSIIAES-IRDGLATWDNWKHVNCDKLTTIIES-------S 362

Query: 207 IGVMHADGYVEIKDR-------SKDVIISGG------ENICSAEVESVLYSITAVNEAAV 253
           + V+      E +              I          ++  ++V  V+  +     + V
Sbjct: 363 LNVLEPA---EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL--HKYSLV 417

Query: 254 VARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTS 313
             +P      IP  ++ LK  LE  +    + I++        Y +P+     + +P   
Sbjct: 418 EKQPKESTISIPSIYLELKVKLE-NEYALHRSIVD-------HYNIPKTFDSDDLIPPYL 469

Query: 314 TGKIQKYL 321
                 ++
Sbjct: 470 DQYFYSHI 477

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.98
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.98
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.64
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.64
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.03
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	97.27
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	96.92
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	96.88
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	96.19
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	95.96
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	95.27
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	95.24
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	95.13
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	94.86
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	94.68
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	94.65
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	94.57
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	94.56
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	94.5
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	94.39
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	94.1
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	93.6
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	93.57
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	93.24
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	93.08
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	92.52
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	92.18
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	92.07
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	92.04
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	91.62
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	91.32
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	90.94
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	90.9
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	90.76
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	90.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	89.92
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	87.56
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	86.1
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	84.1

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=2.1e-56  Score=422.89  Aligned_cols=309  Identities=30%  Similarity=0.449  Sum_probs=276.4

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      ..|+.++|.++++++||++|+++.  ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus        21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav  100 (536)
T 3ni2_A           21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI  100 (536)
T ss_dssp             SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence            479999999999999999999985  688999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc----------------------------cC------c---
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS----------------------------LF------P---  134 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~----------------------------~~------~---  134 (330)
                      ++|+++.++.+++.++++..++++++++......+.....                            ..      +   
T Consensus       101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  180 (536)
T 3ni2_A          101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQVDISPDDV  180 (536)
T ss_dssp             EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHTSCGGGCCCCCCCTTSE
T ss_pred             EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhhccccccccCCCCccCE
Confidence            9999999999999999999999999998766544432110                            00      0   


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       181 a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~  260 (536)
T 3ni2_A          181 VALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEI  260 (536)
T ss_dssp             EECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCH
T ss_pred             EEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCH
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------------hH-----
Q 048729          135 -------------------------------------------------------------------------QR-----  136 (330)
Q Consensus       135 -------------------------------------------------------------------------~~-----  136 (330)
                                                                                               +.     
T Consensus       261 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~  340 (536)
T 3ni2_A          261 GSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLA  340 (536)
T ss_dssp             HHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEE
T ss_pred             HHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhh
Confidence                                                                                     00     


Q ss_pred             ----------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCc
Q 048729          137 ----------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGD  206 (330)
Q Consensus       137 ----------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD  206 (330)
                                .....++|.|++|. +++|+|+++|++++.+  +.|||+++|++++.||+++|+.+.+.|..+|||+|||
T Consensus       341 ~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGD  417 (536)
T 3ni2_A          341 MCLAFAKEPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD  417 (536)
T ss_dssp             ECGGGSSSCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEE
T ss_pred             cccccCCccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeCcccchhhcCChhHHHhhccCCCceEccc
Confidence                      01123467777885 8999997789999998  8899999999999999999999999998799999999


Q ss_pred             eEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHH
Q 048729          207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEI  286 (330)
Q Consensus       207 ~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  286 (330)
                      +|++|+||+++++||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++++..++..    .+.+++
T Consensus       418 l~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~----~~~~~l  493 (536)
T 3ni2_A          418 IGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQ----ATEDEI  493 (536)
T ss_dssp             EEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----CCHHHH
T ss_pred             EEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCC----CCHHHH
Confidence            9999999999999999999999999999999999999999999999999998888889999999887765    678999


Q ss_pred             HHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          287 IEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       287 ~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      ++.++++|+.|++|..++++++||+|++||++|++|++++.++
T Consensus       494 ~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~l  536 (536)
T 3ni2_A          494 KQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAGI  536 (536)
T ss_dssp             HHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC----
T ss_pred             HHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhccC
Confidence            9999999999999999999999999999999999999998764

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=2.2e-56  Score=419.66  Aligned_cols=304  Identities=28%  Similarity=0.459  Sum_probs=272.0

Q ss_pred             HHHHHHHHhcCCCcEEE---eCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEeec
Q 048729           19 GFLERAAAAYTDCPSLV---YNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNI   95 (330)
Q Consensus        19 ~~l~~~~~~~p~~~a~~---~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~l   95 (330)
                      ++|.+.++++|+++++.   +.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl   83 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL   83 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred             hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence            47888999999999988   467899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc--------------------------cC------c---------
Q 048729           96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS--------------------------LF------P---------  134 (330)
Q Consensus        96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~--------------------------~~------~---------  134 (330)
                      ++.++.+++.++++..+++++++++.....+.....                          ..      +         
T Consensus        84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T  163 (503)
T 4fuq_A           84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYT  163 (503)
T ss_dssp             CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEEEEEEC
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeEEEEEC
Confidence            999999999999999999999998754332111000                          00      0         


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       164 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~  243 (503)
T 4fuq_A          164 SGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMARA  243 (503)
T ss_dssp             C--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHTTC
T ss_pred             CCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHhhc
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------------hHHHHhhccC
Q 048729          135 ----------------------------------------------------------------------QRARLKARQG  144 (330)
Q Consensus       135 ----------------------------------------------------------------------~~~~~~~~~G  144 (330)
                                                                                            .......++|
T Consensus       244 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G  323 (503)
T 4fuq_A          244 TVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVG  323 (503)
T ss_dssp             CEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEE
T ss_pred             CEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccc
Confidence                                                                                  0011123466


Q ss_pred             CcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecCCC
Q 048729          145 VKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKD  224 (330)
Q Consensus       145 ~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd  224 (330)
                      .|++|. +++|+|+++|++++.+  +.|||+++|++++.||+++|+.+.+.|..+|||+|||+|++|+||.++++||.||
T Consensus       324 ~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd  400 (503)
T 4fuq_A          324 PALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKD  400 (503)
T ss_dssp             EBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTT
T ss_pred             cCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCC
Confidence            677775 8899996699999999  8899999999999999999999999998899999999999999999999999999


Q ss_pred             eEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEE
Q 048729          225 VIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVV  304 (330)
Q Consensus       225 ~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~  304 (330)
                      +||++|++|+|.+||+.|.+||+|.+++|++.+++..++.+.++++..++..    .+.+++++.++++|+.|++|+.|+
T Consensus       401 ~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~----~~~~~l~~~l~~~L~~~~~P~~i~  476 (503)
T 4fuq_A          401 LVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAT----IDEAQVLHGLDGQLAKFKMPKKVI  476 (503)
T ss_dssp             CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----CCHHHHHHHHBTTBCGGGCCSEEE
T ss_pred             EEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCC----CCHHHHHHHHHhhcccCCCCCEEE
Confidence            9999999999999999999999999999999998888889999999888765    778999999999999999999999


Q ss_pred             EccCCCCCCCCcccHHHHHHHhhhc
Q 048729          305 FSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       305 ~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      ++++||+|++||++|++|+++++++
T Consensus       477 ~v~~lP~t~~GKi~R~~L~~~~~~~  501 (503)
T 4fuq_A          477 FVDDLPRNTMGKVQKNVLRETYKDI  501 (503)
T ss_dssp             EESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred             EECCCCCCcccceeHHHHHHHHHHh
Confidence            9999999999999999999999875

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=6.1e-56  Score=420.94  Aligned_cols=317  Identities=29%  Similarity=0.443  Sum_probs=240.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCcEEEeCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Q 048729            7 PNSANSTPLTTLGFLERAAAAYTDCPSLVYNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM   78 (330)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~   78 (330)
                      .++.+.+..|+.++|.++++++||++|+++.+        +++||+||.++++++|++|.+.|+++||+|+++++|++++
T Consensus        11 ~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~   90 (549)
T 3g7s_A           11 FPSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY   90 (549)
T ss_dssp             CCCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred             CCCCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence            34556778899999999999999999999876        8899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhcc--------------------------
Q 048729           79 YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSL--------------------------  132 (330)
Q Consensus        79 ~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~--------------------------  132 (330)
                      ++++|||+++|++++|+++.++.+++.++++..++++++++......+......                          
T Consensus        91 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (549)
T 3g7s_A           91 VMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGSED  170 (549)
T ss_dssp             HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSSCHHHHHHHSCSC
T ss_pred             HHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCcCHHHHHhcCccc
Confidence            999999999999999999999999999999999999999987665543321100                          


Q ss_pred             ----------C-c-------------------------------------------------------------------
Q 048729          133 ----------F-P-------------------------------------------------------------------  134 (330)
Q Consensus       133 ----------~-~-------------------------------------------------------------------  134 (330)
                                . .                                                                   
T Consensus       171 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~  250 (549)
T 3g7s_A          171 FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYV  250 (549)
T ss_dssp             CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEE
T ss_pred             cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEE
Confidence                      0 0                                                                   


Q ss_pred             ----------------------------------------------------------------h---------------
Q 048729          135 ----------------------------------------------------------------Q---------------  135 (330)
Q Consensus       135 ----------------------------------------------------------------~---------------  135 (330)
                                                                                      .               
T Consensus       251 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~  330 (549)
T 3g7s_A          251 VMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLR  330 (549)
T ss_dssp             EESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCE
T ss_pred             EcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCcccc
Confidence                                                                            0               


Q ss_pred             --------------------HHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcc
Q 048729          136 --------------------RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC  195 (330)
Q Consensus       136 --------------------~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~  195 (330)
                                          ......++|.|++|. +++|+|+++|++++.+  +.|||+++|++++.|||++|+.+.+.
T Consensus       331 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~  407 (549)
T 3g7s_A          331 HNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDI-ELKVISLEDGRELGVG--ESGEIVIRGPNIFKGYWKREKENQEC  407 (549)
T ss_dssp             EEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTC-EEEEECSSSCCEECTT--CCEEEEEESTTSCSEETTCTTGGGTS
T ss_pred             ccceEeccccchhhhcCCccccCcCCCccccCCCC-EEEEEeCCCCcCCCCC--CceEEEEECcchhhhhCCChhhhhhh
Confidence                                001122345555664 6788896699999998  88999999999999999999999988


Q ss_pred             cc--CCC--eEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEe
Q 048729          196 IS--DNG--WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSL  271 (330)
Q Consensus       196 ~~--~~g--~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  271 (330)
                      |.  .+|  ||+|||+|++|+||.++|+||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.+.+++++
T Consensus       408 f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~  487 (549)
T 3g7s_A          408 WWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVL  487 (549)
T ss_dssp             EEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEE
T ss_pred             hhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEE
Confidence            73  477  99999999999999999999999999999999999999999999999999999999998888999999998


Q ss_pred             cCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          272 KRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       272 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .++...  ..+.+++++.++++|+.|++|+.|+++++||+|++||++|++|++.+.+
T Consensus       488 ~~~~~~--~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~  542 (549)
T 3g7s_A          488 KPEYRG--KVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAE  542 (549)
T ss_dssp             CSTTTT--SCCHHHHHHHHHTTCC-----CCCCEEEECC------------------
T ss_pred             CCCccC--cCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhc
Confidence            876321  1678999999999999999999999999999999999999999998764

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.8e-54  Score=409.81  Aligned_cols=309  Identities=28%  Similarity=0.459  Sum_probs=276.7

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      +...|+.++|.++++.+||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus        22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~  101 (539)
T 1mdb_A           22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL  101 (539)
T ss_dssp             SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred             ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccch--------HHHHHHh----------------------c---cCc----
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHT--------YLLLEAL----------------------S---LFP----  134 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--------~~~~~~~----------------------~---~~~----  134 (330)
                      ++|+++.++.+++.++++..+++++++++...        ..+....                      .   ...    
T Consensus       102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (539)
T 1mdb_A          102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKS  181 (539)
T ss_dssp             EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCCCCCCCCCCT
T ss_pred             EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhccccccccCCCCc
Confidence            99999999999999999999999999976531        1111000                      0   000    


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       182 ~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~  261 (539)
T 1mdb_A          182 SDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSP  261 (539)
T ss_dssp             TSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSH
T ss_pred             CceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       262 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  341 (539)
T 1mdb_A          262 DDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTR  341 (539)
T ss_dssp             HHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECC
T ss_pred             HHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccC
Confidence                                                                                            


Q ss_pred             ---hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEe
Q 048729          135 ---QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH  211 (330)
Q Consensus       135 ---~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~  211 (330)
                         .......++|.|+.+.++++|+|+ +|++++.+  +.|||+++|++++.|||++|+.+.+.|..+|||+|||+|++|
T Consensus       342 ~~~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~  418 (539)
T 1mdb_A          342 LDDPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT  418 (539)
T ss_dssp             TTSCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred             CCCcHHhcCCCCCcccCCCceEEEECC-CCCCCcCC--CcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEEC
Confidence               112345678888876668999998 89999998  889999999999999999999999999779999999999999


Q ss_pred             cCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHH
Q 048729          212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR  291 (330)
Q Consensus       212 ~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~  291 (330)
                      +||+++++||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++++.... .    .+.+++++.++
T Consensus       419 ~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~-~----~~~~~l~~~l~  493 (539)
T 1mdb_A          419 RDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-A----PKAAELKAFLR  493 (539)
T ss_dssp             TTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-C----CCHHHHHHHHH
T ss_pred             CCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCC-C----CCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988888899999987742 2    57899999999


Q ss_pred             hc-CCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          292 AR-LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       292 ~~-l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++ |+.|++|+.|+++++||+|++||++|++|++++.+
T Consensus       494 ~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  531 (539)
T 1mdb_A          494 ERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE  531 (539)
T ss_dssp             HTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred             hCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHH
Confidence            98 99999999999999999999999999999998764

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=3.8e-56  Score=418.78  Aligned_cols=310  Identities=29%  Similarity=0.439  Sum_probs=183.5

Q ss_pred             CCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCc
Q 048729           11 NSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGA   90 (330)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~   90 (330)
                      ...++|+.++|.++++++||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus         2 s~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga   81 (509)
T 3ivr_A            2 SLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA   81 (509)
T ss_dssp             CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred             CCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhcc--------------------------Cc----------
Q 048729           91 ILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSL--------------------------FP----------  134 (330)
Q Consensus        91 ~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~--------------------------~~----------  134 (330)
                      +++|+++.++.+++.++++..++++++++......+......                          ..          
T Consensus        82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  161 (509)
T 3ivr_A           82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAAD  161 (509)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCCCSCCCCCCCCTTS
T ss_pred             EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccCCCCCCcCCCCccc
Confidence            999999999999999999999999999998776553222100                          00          


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       162 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~  241 (509)
T 3ivr_A          162 GFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAA  241 (509)
T ss_dssp             EEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHH
T ss_pred             cEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHH
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------------hHHHHhh
Q 048729          135 -------------------------------------------------------------------------QRARLKA  141 (330)
Q Consensus       135 -------------------------------------------------------------------------~~~~~~~  141 (330)
                                                                                               .......
T Consensus       242 ~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~  321 (509)
T 3ivr_A          242 RDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRPK  321 (509)
T ss_dssp             HHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECCHHHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGSTT
T ss_pred             HHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCChHHHHHHHHhcCCCeEEcccCccccccccccCccccCCC
Confidence                                                                                     0011122


Q ss_pred             ccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEec
Q 048729          142 RQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDR  221 (330)
Q Consensus       142 ~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR  221 (330)
                      ++|.|++|. +++|+|+ +|++++.+  +.|||+++|++++.||+++|+.+.+.|. +|||+|||+|++|++|+++++||
T Consensus       322 ~~G~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR  396 (509)
T 3ivr_A          322 SAGRPLFWR-TVAVVDA-EDRPLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGR  396 (509)
T ss_dssp             SCCEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEE
T ss_pred             cccccCCCc-EEEEECC-CCCCCCCC--CceEEEEecCCccccccCCHHHhHHHhh-cCCcccccEEEECCCceEEEeCC
Confidence            357777775 8899998 79999998  8899999999999999999999999998 89999999999999999999999


Q ss_pred             C--CCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCC
Q 048729          222 S--KDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMV  299 (330)
Q Consensus       222 ~--dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~  299 (330)
                      .  +|+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.+.+++++.++..    .+.+++++.++++|+.|++
T Consensus       397 ~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~----~~~~~l~~~l~~~L~~~~~  472 (509)
T 3ivr_A          397 APEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES----IAADALAEFVASLIARYKK  472 (509)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             CCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC----CCHHHHHHHHHhhCcccCC
Confidence            9  899999999999999999999999999999999999888889999999887755    6678999999999999999


Q ss_pred             CceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          300 PRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       300 p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      |+.|+++++||+|++||++|++|++++++.
T Consensus       473 P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~  502 (509)
T 3ivr_A          473 PKHVVFVEALPKDAKGAIDRAAVKTAHGQE  502 (509)
T ss_dssp             ------------------------------
T ss_pred             CcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence            999999999999999999999999998753

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=2e-54  Score=407.62  Aligned_cols=309  Identities=36%  Similarity=0.546  Sum_probs=270.0

Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCcEEEeCCe--eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhh
Q 048729            9 SANSTPLTTLGFLERAAAAYTDCPSLVYNNT--TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVP   86 (330)
Q Consensus         9 ~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~--~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~   86 (330)
                      .......|+.++|.++++.+|+++|+++.++  ++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+
T Consensus        10 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~   89 (517)
T 3r44_A           10 DDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA   89 (517)
T ss_dssp             --CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred             CCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence            3344567999999999999999999999776  99999999999999999999999999999999999999999999999


Q ss_pred             hcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhcc--------------------------Cc------
Q 048729           87 MSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSL--------------------------FP------  134 (330)
Q Consensus        87 ~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~--------------------------~~------  134 (330)
                      ++|++++|+++.++.+++.++++..++++++++......+......                          ..      
T Consensus        90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (517)
T 3r44_A           90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGG  169 (517)
T ss_dssp             HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHHCCCCCCCCCCCT
T ss_pred             HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhccCcCCCCCCCCC
Confidence            9999999999999999999999999999999987655433221100                          00      


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       170 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~  249 (517)
T 3r44_A          170 DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATK  249 (517)
T ss_dssp             TSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHH
T ss_pred             CCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       250 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  329 (517)
T 3r44_A          250 VWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLS  329 (517)
T ss_dssp             HHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECG
T ss_pred             HHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCC
Confidence                                                                                            


Q ss_pred             -hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecC
Q 048729          135 -QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHAD  213 (330)
Q Consensus       135 -~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~  213 (330)
                       .......+.|.|+++. ++.++|+ +|.+++.+   .|||+++|++++.||+++|+.+.+.|. +|||+|||+|++|+|
T Consensus       330 ~~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~-~g~~~TGDl~~~~~d  403 (517)
T 3r44_A          330 EDALRKAGSAGRATMFT-DVAVRGD-DGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDE  403 (517)
T ss_dssp             GGTTTTTTCCBEECTTE-EEEEECT-TSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEE-TTEEEEEEEEEECTT
T ss_pred             ccccccCCCCCcCCCCe-EEEEECC-CCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhc-CCCEecceeEEEcCC
Confidence             0011233455566664 6777887 77777664   599999999999999999999999997 899999999999999


Q ss_pred             ceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhc
Q 048729          214 GYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR  293 (330)
Q Consensus       214 G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~  293 (330)
                      |+++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.+.+++ +.++..    .+.+++++.++++
T Consensus       404 G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~----~~~~~l~~~l~~~  478 (517)
T 3r44_A          404 GYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNE----VSEQQIVEYCGTR  478 (517)
T ss_dssp             SCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTT----CCHHHHHHHHHHH
T ss_pred             eeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCC----CCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999888888888887 555444    6789999999999


Q ss_pred             CCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          294 LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       294 l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      |+.|++|+.|+++++||+|++||++|++|++++.+
T Consensus       479 L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~  513 (517)
T 3r44_A          479 LARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSA  513 (517)
T ss_dssp             SCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGG
T ss_pred             CCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHh
Confidence            99999999999999999999999999999999865

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=6.6e-55  Score=413.30  Aligned_cols=309  Identities=22%  Similarity=0.357  Sum_probs=183.6

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      ....|+.++|.++++++||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus        27 ~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav  106 (544)
T 3o83_A           27 WIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV  106 (544)
T ss_dssp             CCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred             CCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence            44679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccch--------HHHHHHh-------------------------c-------
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHT--------YLLLEAL-------------------------S-------  131 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--------~~~~~~~-------------------------~-------  131 (330)
                      ++|+++.++.+++.++++..++++++++....        ..+....                         .       
T Consensus       107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (544)
T 3o83_A          107 VLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFS  186 (544)
T ss_dssp             EEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCCSSCCCCC
T ss_pred             EecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhcccccccccc
Confidence            99999999999999999999999999876542        1111000                         0       


Q ss_pred             cC-c----------------------------------------------------------------------------
Q 048729          132 LF-P----------------------------------------------------------------------------  134 (330)
Q Consensus       132 ~~-~----------------------------------------------------------------------------  134 (330)
                      .. .                                                                            
T Consensus       187 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~  266 (544)
T 3o83_A          187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP  266 (544)
T ss_dssp             CCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred             cCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence            00 0                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~  346 (544)
T 3o83_A          267 NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLV  346 (544)
T ss_dssp             SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCE
T ss_pred             CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccc
Confidence                                                                                            


Q ss_pred             -------hHHHHhhccCCcc-cCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCc
Q 048729          135 -------QRARLKARQGVKT-VGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGD  206 (330)
Q Consensus       135 -------~~~~~~~~~G~~~-~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD  206 (330)
                             .......++|.|+ .+ ++++|+|+ +|++++.+  +.|||+++|++++.||+++|+.+...|..+|||+|||
T Consensus       347 ~~~~~~~~~~~~~~~~G~p~~~~-~~~~i~d~-~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGD  422 (544)
T 3o83_A          347 NYTRLDDSDEQIFTTQGRPISSD-DEIKIVDE-QYREVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGD  422 (544)
T ss_dssp             EECCTTSCHHHHHHCCCEESCTT-CEEEEECT-TSCBCCTT--CCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEE
T ss_pred             eeecCCCchhhccCCCceecCCC-cEEEEECC-CCCCCCCC--CeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCC
Confidence                   1223456778886 55 49999997 89999999  8899999999999999999999999997799999999


Q ss_pred             eEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHH
Q 048729          207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEI  286 (330)
Q Consensus       207 ~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  286 (330)
                      +|++|+||+++++||.||+||++|++|+|.+||+.|.+||+|.+++|++..++..++.++++++..+..     .+..++
T Consensus       423 lg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~-----~~~~~l  497 (544)
T 3o83_A          423 LVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE-----LKAVVL  497 (544)
T ss_dssp             EEEECTTSCEEEEEEEC---------------------------------------------------------------
T ss_pred             EEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCC-----CCHHHH
Confidence            999999999999999999999999999999999999999999999999999988888999999877632     566788


Q ss_pred             HHHHHh-cCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          287 IEYCRA-RLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       287 ~~~l~~-~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      ++.+++ +|+.|++|..++++++||+|++||++|++|++++.+.
T Consensus       498 ~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  541 (544)
T 3o83_A          498 RRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS  541 (544)
T ss_dssp             --------------------------------------------
T ss_pred             HHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence            899988 7999999999999999999999999999999998754

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=5.8e-54  Score=409.28  Aligned_cols=308  Identities=23%  Similarity=0.318  Sum_probs=251.9

Q ss_pred             CCHH-HHHHHHHHhcCCCcEEEe-----CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhc
Q 048729           15 LTTL-GFLERAAAAYTDCPSLVY-----NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMS   88 (330)
Q Consensus        15 ~~~~-~~l~~~~~~~p~~~a~~~-----~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~   88 (330)
                      .++. ++|.+.++.+||++|+++     .++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus        55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~  134 (580)
T 3etc_A           55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL  134 (580)
T ss_dssp             CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence            4555 999999999999999996     2478999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch--HHHHHHh--------------------------------c---
Q 048729           89 GAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT--YLLLEAL--------------------------------S---  131 (330)
Q Consensus        89 G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--~~~~~~~--------------------------------~---  131 (330)
                      |++++|+++.++++++.++++..++++++++....  ..+....                                .   
T Consensus       135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (580)
T 3etc_A          135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFE  214 (580)
T ss_dssp             TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSCSCCC
T ss_pred             CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCCcccc
Confidence            99999999999999999999999999999876533  2111100                                0   


Q ss_pred             -c-----Cc-----------------------------------------------------------------------
Q 048729          132 -L-----FP-----------------------------------------------------------------------  134 (330)
Q Consensus       132 -~-----~~-----------------------------------------------------------------------  134 (330)
                       .     ..                                                                       
T Consensus       215 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~  294 (580)
T 3etc_A          215 RPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCA  294 (580)
T ss_dssp             CCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCE
T ss_pred             cCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcE
Confidence             0     00                                                                       


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       295 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG  374 (580)
T 3etc_A          295 VFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFG  374 (580)
T ss_dssp             EEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEEC
T ss_pred             EEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccc
Confidence                                                                                            


Q ss_pred             ------------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEec-----CcccccccCCchhhhcccc
Q 048729          135 ------------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRG-----GCVTVGYFKDKEATRRCIS  197 (330)
Q Consensus       135 ------------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~-----~~~~~gy~~~~~~~~~~~~  197 (330)
                                  .......++|.|++|. +++|+|+ +|++++.+  +.|||+++|     +.++.||+++|+.+.+.|.
T Consensus       375 ~TE~~~~~~~~~~~~~~~~~~G~p~~~~-~v~ivd~-~g~~~~~g--~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~  450 (580)
T 3etc_A          375 QTETVVTIATFPWMEPKPGSIGKPTPGY-KIELMDR-DGRLCEVG--EEGEIVINTMEGKPVGLFVHYGKDPERTEETWH  450 (580)
T ss_dssp             CTTSSCCEECCTTSCCCTTCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE
T ss_pred             cccccceeecCCCCCCCCCccccCCCCC-EEEEECC-CCCCCCCC--CceEEEEecCCCCCCeeeccccCCHhHHHhhcC
Confidence                        0111234577788886 8999998 89999998  889999997     7899999999999999998


Q ss_pred             CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCccc
Q 048729          198 DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLEL  277 (330)
Q Consensus       198 ~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  277 (330)
                       +|||+|||+|++|+||+++|+||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.+.++|++.++...
T Consensus       451 -~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~  529 (580)
T 3etc_A          451 -DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTP  529 (580)
T ss_dssp             -TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred             -CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCC
Confidence             9999999999999999999999999999999999999999999999999999999999999888999999999887541


Q ss_pred             CCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          278 TKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       278 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      . ....+++++.++++|++|++|+.|+++++||+|++||++|++|++++++
T Consensus       530 ~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~  579 (580)
T 3etc_A          530 S-DSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS  579 (580)
T ss_dssp             C-HHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred             C-HHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence            1 0234789999999999999999999999999999999999999998764

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=3.4e-53  Score=398.21  Aligned_cols=304  Identities=27%  Similarity=0.385  Sum_probs=264.4

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      +|+.++|.++++++||++|+.+.  ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   81 (504)
T 1t5h_X            2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (504)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence            57999999999999999999987  8899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEE--cccchHHH-HHH--------------------hccC--c-------------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFV--DHLHTYLL-LEA--------------------LSLF--P-------------  134 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~--~~~~~~~~-~~~--------------------~~~~--~-------------  134 (330)
                      +|+++.++++++.++++..+++++++  +......+ ...                    ....  .             
T Consensus        82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T  161 (504)
T 1t5h_X           82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYT  161 (504)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEEGGGTEETTEECCCSCCCCCCCCCTTSEEEEEEC
T ss_pred             EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEEecchhhcCcccccCCccCCCCCCCCCeEEEEeC
Confidence            99999999999999999999999999  65544333 110                    0000  0             


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       162 SGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~  241 (504)
T 1t5h_X          162 SGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQ  241 (504)
T ss_dssp             CC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHH
T ss_pred             CCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------------------------hHHHH---------------------------hh
Q 048729          135 ----------------------------------------------QRARL---------------------------KA  141 (330)
Q Consensus       135 ----------------------------------------------~~~~~---------------------------~~  141 (330)
                                                                    ....+                           ..
T Consensus       242 ~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~  321 (504)
T 1t5h_X          242 QEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTG  321 (504)
T ss_dssp             HHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSS
T ss_pred             HhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccccccccCCCCC
Confidence                                                          00000                           11


Q ss_pred             ccCCcccCceeEEEeCCCCC---cccCCCCceecEEEEe-cCcccccccCCchhhhccccCCCeEEeCceEEEecCceEE
Q 048729          142 RQGVKTVGLAEVDVVNPETG---ESVKRDGVSLGEVVLR-GGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVE  217 (330)
Q Consensus       142 ~~G~~~~g~te~~i~d~~~g---~~~~~~~~~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~  217 (330)
                      +.|.|.++. +++++|+ ++   ++++.+  +.|||+++ |+.++.||+++|+.+.+.|. +|||+|||+|++|+||+++
T Consensus       322 ~~g~p~~~~-~~~i~~~-~~~~~~~~~~g--~~GEl~v~gg~~~~~GY~~~~~~t~~~f~-~g~~~TGDlg~~~~dG~l~  396 (504)
T 1t5h_X          322 TEMAPGFFS-EVRIVRI-GGGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVR  396 (504)
T ss_dssp             SEEBCCTTC-CEEEECT-TSCTTCBCCTT--CCEEEEEECCTTSCCCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEE
T ss_pred             ccccCCCCC-ceeEEec-cCCCCCcCCCC--CcceEEEeCCceeeceecCCchhhhhhhc-CCccccCcEEEECCCceEE
Confidence            223333443 4566666 45   788887  88999999 99999999999999999996 8999999999999999999


Q ss_pred             EEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHh-cCCC
Q 048729          218 IKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRA-RLPR  296 (330)
Q Consensus       218 ~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~-~l~~  296 (330)
                      ++||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++|++.++..    .+.+++.+.+++ +|+.
T Consensus       397 ~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~----~~~~~l~~~~~~~~L~~  472 (504)
T 1t5h_X          397 ILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET----LSADALDTFCRSSELAD  472 (504)
T ss_dssp             EEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCC----CCHHHHHHHHHTSSCCG
T ss_pred             EeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcC----cCHHHHHHHHhhccCcc
Confidence            99999999999999999999999999999999999999999888899999999887754    678999999998 9999


Q ss_pred             CCCCceEEEccCCCCCCCCcccHHHHHHHhh
Q 048729          297 YMVPRKVVFSEELPKTSTGKIQKYLLREFAK  327 (330)
Q Consensus       297 ~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~  327 (330)
                      |++|+.++++++||+|++||++|++|++++.
T Consensus       473 ~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          473 FKRPKRYFILDQLPKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             GGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred             cccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence            9999999999999999999999999999875

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=5.7e-54  Score=406.64  Aligned_cols=312  Identities=36%  Similarity=0.534  Sum_probs=239.4

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCcEEEe----CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHh
Q 048729           10 ANSTPLTTLGFLERAAAAYTDCPSLVY----NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGV   85 (330)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~p~~~a~~~----~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~   85 (330)
                      ....+.|+.++|.+.++.+||++|+++    .++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        13 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~   92 (541)
T 1v25_A           13 MMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV   92 (541)
T ss_dssp             BCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            334567999999999999999999994    5688999999999999999999999999999999999999999999999


Q ss_pred             hhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc---------------------------------c
Q 048729           86 PMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS---------------------------------L  132 (330)
Q Consensus        86 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~---------------------------------~  132 (330)
                      +++|++++|+++.++.+++.++++..+++++++++.....+.....                                 .
T Consensus        93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (541)
T 1v25_A           93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVR  172 (541)
T ss_dssp             HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCCCC
T ss_pred             HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccCCccc
Confidence            9999999999999999999999999999999998765443322100                                 0


Q ss_pred             Cc------------------------------------------------------------------------------
Q 048729          133 FP------------------------------------------------------------------------------  134 (330)
Q Consensus       133 ~~------------------------------------------------------------------------------  134 (330)
                      ..                                                                              
T Consensus       173 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~  252 (541)
T 1v25_A          173 VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP  252 (541)
T ss_dssp             CCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT
T ss_pred             CCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCC
Confidence            00                                                                              


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~  332 (541)
T 1v25_A          253 RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPV  332 (541)
T ss_dssp             CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSE
T ss_pred             CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccc
Confidence                                                                                            


Q ss_pred             ------h----------HHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC
Q 048729          135 ------Q----------RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD  198 (330)
Q Consensus       135 ------~----------~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~  198 (330)
                            .          ......++|.|++|. +++|+|+ +|++++.++++.|||+++|++++.|||++|+.+.+.|..
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~  410 (541)
T 1v25_A          333 VVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTP  410 (541)
T ss_dssp             EEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCT
T ss_pred             eecccccccccccCccccccccCCCCCcCCCc-EEEEECC-CCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccC
Confidence                  0          012346778888996 9999998 889888543368999999999999999999999999987


Q ss_pred             CCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccC
Q 048729          199 NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELT  278 (330)
Q Consensus       199 ~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  278 (330)
                      +|||+|||+|++|++|+++++||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++|++. +..  
T Consensus       411 ~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~--  487 (541)
T 1v25_A          411 DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEK--  487 (541)
T ss_dssp             TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------
T ss_pred             CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCC--
Confidence            99999999999999999999999999999999999999999999999999999999999988888999998876 322  


Q ss_pred             CCCCHHHHHHHHHh-cCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          279 KKPTEKEIIEYCRA-RLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       279 ~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                        .+.+++.+.+++ +|+.|++|+.++++++||+|++||++|++|++.+.+
T Consensus       488 --~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  536 (541)
T 1v25_A          488 --PTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN  536 (541)
T ss_dssp             ---------------CCCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred             --CCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHH
Confidence              456789999999 899999999999999999999999999999998865

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1e-53  Score=406.36  Aligned_cols=303  Identities=20%  Similarity=0.286  Sum_probs=270.5

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      ..++.++|.++++.+||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus        38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v  117 (563)
T 1amu_A           38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV  117 (563)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh----------------cc-------Cc----------------
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL----------------SL-------FP----------------  134 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~----------------~~-------~~----------------  134 (330)
                      |+++.++.+++.++++..+++++++++.....+....                ..       ..                
T Consensus       118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~P  197 (563)
T 1amu_A          118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNP  197 (563)
T ss_dssp             ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTTSCCSCCCCCCCTTSEEEEEEEC-----C
T ss_pred             EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhccccCccCCCCCCCCCeEEEEECCCCCCCC
Confidence            9999999999999999999999999876543322110                00       00                


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       198 KgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~  277 (563)
T 1amu_A          198 KGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVI  277 (563)
T ss_dssp             EEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEE
T ss_pred             cEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEE
Confidence                                                                                            


Q ss_pred             -------------------------------------------------h-------------HHHHhhccCCcccCcee
Q 048729          135 -------------------------------------------------Q-------------RARLKARQGVKTVGLAE  152 (330)
Q Consensus       135 -------------------------------------------------~-------------~~~~~~~~G~~~~g~te  152 (330)
                                                                       +             ......++|.|++|. +
T Consensus       278 ~~~P~~~~~l~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~  356 (563)
T 1amu_A          278 TLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNT-Q  356 (563)
T ss_dssp             EECHHHHTTSCTTTCCSCSEEEEESSCCCHHHHHHHTTTSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTE-E
T ss_pred             EeCHHHHHHHHhcccccccEEEEEEecCCHHHHHHHHhCCeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCC-E
Confidence                                                             0             001223578888886 9


Q ss_pred             EEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC------CCeEEeCceEEEecCceEEEEecCCCeE
Q 048729          153 VDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD------NGWFYTGDIGVMHADGYVEIKDRSKDVI  226 (330)
Q Consensus       153 ~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~g~~~TGD~~~~~~~G~l~~~GR~dd~i  226 (330)
                      ++|+|+ +|++++.+  +.|||+++|++++.|||++|+.+.+.|..      ++||+|||+|++|+||+++++||.||+|
T Consensus       357 v~i~d~-~~~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~I  433 (563)
T 1amu_A          357 IYIVDE-NLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQV  433 (563)
T ss_dssp             EEEECT-TSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred             EEEECC-CcCCCCCC--CcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEE
Confidence            999998 89999998  88999999999999999999999888742      3599999999999999999999999999


Q ss_pred             EeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEc
Q 048729          227 ISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFS  306 (330)
Q Consensus       227 k~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v  306 (330)
                      |++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++....      .+.+++++.++++|+.|++|+.|+++
T Consensus       434 k~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~------~~~~~l~~~l~~~L~~y~~P~~i~~v  507 (563)
T 1amu_A          434 KIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH------IPLEQLRQFSSEELPTYMIPSYFIQL  507 (563)
T ss_dssp             EETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC------CCHHHHHHHHHHHSCGGGSCSEEEEC
T ss_pred             EECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCC------CCHHHHHHHHHhhCchhhCCcEEEEe
Confidence            999999999999999999999999999999988778889999987643      56799999999999999999999999


Q ss_pred             cCCCCCCCCcccHHHHHHHh
Q 048729          307 EELPKTSTGKIQKYLLREFA  326 (330)
Q Consensus       307 ~~lP~t~~GKv~r~~l~~~~  326 (330)
                      ++||+|++||++|++|++..
T Consensus       508 ~~lP~t~~GKi~r~~L~~~~  527 (563)
T 1amu_A          508 DKMPLTSNGKIDRKQLPEPD  527 (563)
T ss_dssp             SSCCBCTTSSBCGGGSCCCC
T ss_pred             cccCCCCCcChhHHhcCCcc
Confidence            99999999999999998754

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=4.1e-54  Score=406.12  Aligned_cols=312  Identities=19%  Similarity=0.243  Sum_probs=262.9

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      ...|+.++|.+.++.+|+++|+.+.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~   81 (521)
T 3l8c_A            2 SLKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY   81 (521)
T ss_dssp             CCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred             cHHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHH-----------HHHH-hccCc--------------------------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYL-----------LLEA-LSLFP--------------------------  134 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----------~~~~-~~~~~--------------------------  134 (330)
                      +|+++.++++++.++++..++++++++......           +... .....                          
T Consensus        82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK  161 (521)
T 3l8c_A           82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPK  161 (521)
T ss_dssp             EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCC
T ss_pred             EecCccccHHHHHHHHHhCCCCEEEecCccccccccCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCC
Confidence            999999999999999999999999987643211           1100 00000                          


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       162 gV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~  241 (521)
T 3l8c_A          162 GVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGI  241 (521)
T ss_dssp             EEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSE
T ss_pred             EEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcE
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------------------------hH---HHHh
Q 048729          135 -----------------------------------------------------------------------QR---ARLK  140 (330)
Q Consensus       135 -----------------------------------------------------------------------~~---~~~~  140 (330)
                                                                                             ..   ....
T Consensus       242 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~  321 (521)
T 3l8c_A          242 WTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTR  321 (521)
T ss_dssp             EEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSS
T ss_pred             EEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCc
Confidence                                                                                   00   0112


Q ss_pred             hccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccc---cCCCeEEeCceEEEecCceEE
Q 048729          141 ARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCI---SDNGWFYTGDIGVMHADGYVE  217 (330)
Q Consensus       141 ~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~g~~~TGD~~~~~~~G~l~  217 (330)
                      .++|.|++|. +++|+|+ +|++++.+  +.|||+++|++++.|||++|+.+.+.|   ..+|||+|||+|++|++|+++
T Consensus       322 ~~vG~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~  397 (521)
T 3l8c_A          322 LPIGYPKPDS-PTYIIDE-DGKELSSG--EQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILL  397 (521)
T ss_dssp             CEEEEECTTS-CEEEECT-TSCBCCTT--CCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEE
T ss_pred             cccccccCCC-EEEEECC-CcCCCCCC--CceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEE
Confidence            3467777785 8899998 89999998  889999999999999999999998887   447899999999999999999


Q ss_pred             EEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCC-CCceeEEEEEecCCcccCCC---CCHHHHHHHHHhc
Q 048729          218 IKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMF-WGEIPCAFVSLKRDLELTKK---PTEKEIIEYCRAR  293 (330)
Q Consensus       218 ~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~~---~~~~~l~~~l~~~  293 (330)
                      +.||.||+||++|++|+|.+||+.|.++|+|.+++|++..++. .++.+++++++.++......   ...+++++.++++
T Consensus       398 ~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~  477 (521)
T 3l8c_A          398 YGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDH  477 (521)
T ss_dssp             EEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGG
T ss_pred             EeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999887543 35789999998887542111   1257899999999


Q ss_pred             CCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          294 LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       294 l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      |+.|++|+.|+++++||+|++||+||++|++++++
T Consensus       478 l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~  512 (521)
T 3l8c_A          478 MMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNN  512 (521)
T ss_dssp             SCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-
T ss_pred             CccccCCeEEEEecccCCCCCcCccHHHHhhhhhc
Confidence            99999999999999999999999999999999865

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=4.9e-55  Score=416.38  Aligned_cols=306  Identities=23%  Similarity=0.298  Sum_probs=177.1

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      ...++.++|.++++++||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  152 (570)
T 4gr5_A           73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY  152 (570)
T ss_dssp             CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH-------------hcc-C-----c-------------------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA-------------LSL-F-----P-------------------  134 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-------------~~~-~-----~-------------------  134 (330)
                      +|+++.++.+++.++++..++++++++......+...             ... .     +                   
T Consensus       153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV  232 (570)
T 4gr5_A          153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTTTLYVEDEAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGV  232 (570)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSSEEEECCC-------CCCCCCCCCTTSEEEEECCSSCCSSCCCE
T ss_pred             EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCCcceeeeccccccccccccCCCCCCCCeEEEEECCcCCCCCeEE
Confidence            9999999999999999999999999976543221100             000 0     0                   


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       233 ~~th~~l~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~  312 (570)
T 4gr5_A          233 MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSAS  312 (570)
T ss_dssp             EEEHHHHHHHHSSCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHH
T ss_pred             EEecHHHHHHHHhhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------h--------------HHHHhhccCCcccCc
Q 048729          135 --------------------------------------------------Q--------------RARLKARQGVKTVGL  150 (330)
Q Consensus       135 --------------------------------------------------~--------------~~~~~~~~G~~~~g~  150 (330)
                                                                        +              ......++|.|++|.
T Consensus       313 ~~~~l~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~  392 (570)
T 4gr5_A          313 LFNFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGK  392 (570)
T ss_dssp             HHHHHHHHCGGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTE
T ss_pred             HHHHHHhhchhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCC
Confidence                                                              0              000112367777885


Q ss_pred             eeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC--------CCeEEeCceEEEecCceEEEEecC
Q 048729          151 AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD--------NGWFYTGDIGVMHADGYVEIKDRS  222 (330)
Q Consensus       151 te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------~g~~~TGD~~~~~~~G~l~~~GR~  222 (330)
                       +++|+|+ ++++++.+  +.|||+++|++++.|||++|+.+.+.|..        +|||+|||+|++|+||+++|+||+
T Consensus       393 -~v~i~d~-~~~~~~~G--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~  468 (570)
T 4gr5_A          393 -RAYVLDD-DLKPAANG--ALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRA  468 (570)
T ss_dssp             -EEEEECT-TSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-
T ss_pred             -EEEEECC-CCCCCCCC--CcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEccc
Confidence             8999998 89999998  89999999999999999999999888743        379999999999999999999999


Q ss_pred             CCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCce
Q 048729          223 KDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRK  302 (330)
Q Consensus       223 dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~  302 (330)
                      ||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++++.......   .+.++++++++++|+.|++|..
T Consensus       469 ~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~---~~~~~l~~~l~~~l~~~~~P~~  545 (570)
T 4gr5_A          469 DDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP---PDAAELRRHVAEALPAYMVPVE  545 (570)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC---cCHHHHHHHHHhhCccccCCcE
Confidence            9999999999999999999999999999999999888788889999887654321   5678999999999999999999


Q ss_pred             EEEccCCCCCCCCcccHHHHHHH
Q 048729          303 VVFSEELPKTSTGKIQKYLLREF  325 (330)
Q Consensus       303 ~~~v~~lP~t~~GKv~r~~l~~~  325 (330)
                      ++++++||+|++||++|++|++.
T Consensus       546 i~~v~~lP~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          546 CVPVDELPRTPNGKLDRRALTGS  568 (570)
T ss_dssp             -----------------------
T ss_pred             EEEcccCCCCCCcCcchHhhhcc
Confidence            99999999999999999999875

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=4.5e-54  Score=404.95  Aligned_cols=311  Identities=20%  Similarity=0.216  Sum_probs=266.7

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN   94 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~   94 (330)
                      +|+.++|.++++++||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp   80 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP   80 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred             CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEcccch-----------HHHHHH----hccC--------c-----------------
Q 048729           95 INTRLDAHTLSVLLQHSESKLVFVDHLHT-----------YLLLEA----LSLF--------P-----------------  134 (330)
Q Consensus        95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~-----------~~~~~~----~~~~--------~-----------------  134 (330)
                      +++.++.+++.++++..++++++++....           ..+...    ....        .                 
T Consensus        81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK  160 (512)
T 3fce_A           81 VDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPK  160 (512)
T ss_dssp             EETTSCHHHHHHHHHHSCCCEEEESSCCCSSCCSSEEEETHHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CE
T ss_pred             eCCCCcHHHHHHHHHhcCCCEEEecCcccccccccceechhhhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCc
Confidence            99999999999999999999999874211           011100    0000        0                 


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       161 gv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~  240 (512)
T 3fce_A          161 GVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWT  240 (512)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEE
T ss_pred             eEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEE
Confidence                                                                                            


Q ss_pred             ------------------------------------h------------------------------------HHHHhhc
Q 048729          135 ------------------------------------Q------------------------------------RARLKAR  142 (330)
Q Consensus       135 ------------------------------------~------------------------------------~~~~~~~  142 (330)
                                                          .                                    ......+
T Consensus       241 ~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~  320 (512)
T 3fce_A          241 STPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP  320 (512)
T ss_dssp             ECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCC
T ss_pred             ecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCc
Confidence                                                0                                    0001223


Q ss_pred             cCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccc---cCCCeEEeCceEEEecCceEEEE
Q 048729          143 QGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCI---SDNGWFYTGDIGVMHADGYVEIK  219 (330)
Q Consensus       143 ~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~g~~~TGD~~~~~~~G~l~~~  219 (330)
                      +|.++++. ++.|+|+ +|++++.+  +.|||+++|++++.|||++|+.+.+.|   ..+|||+|||+|++ +||++++.
T Consensus       321 ~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~  395 (512)
T 3fce_A          321 VGYCKSDC-RLLIMKE-DGTIAPDG--EKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYN  395 (512)
T ss_dssp             CEEECTTC-EEEEECS-SSCBCCTT--SCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEE
T ss_pred             cccccCCc-EEEEECC-CCCCCCCC--CeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEe
Confidence            55566665 7788887 89999998  889999999999999999999998887   34679999999999 79999999


Q ss_pred             ecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCC
Q 048729          220 DRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMV  299 (330)
Q Consensus       220 GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~  299 (330)
                      ||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..++.........+++++.++++|+.|++
T Consensus       396 GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~  475 (512)
T 3fce_A          396 GRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMI  475 (512)
T ss_dssp             EEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGS
T ss_pred             cccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcC
Confidence            99999999999999999999999999999999999998887778899999887764311101246799999999999999


Q ss_pred             CceEEEccCCCCCCCCcccHHHHHHHhhhcC
Q 048729          300 PRKVVFSEELPKTSTGKIQKYLLREFAKSVS  330 (330)
Q Consensus       300 p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~  330 (330)
                      |+.++++++||+|++||++|++|++.+++.|
T Consensus       476 P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~  506 (512)
T 3fce_A          476 PRKFMYQSSIPMTPNGKVDRKKLLSEVTALE  506 (512)
T ss_dssp             CSEEEECSCCCBCTTSSBCHHHHHHHHHC--
T ss_pred             CeEEEEecccCCCCCcChHHHHHHhhhhhcc
Confidence            9999999999999999999999999998754

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=9.3e-53  Score=404.15  Aligned_cols=306  Identities=25%  Similarity=0.398  Sum_probs=270.4

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      ....|+.++|.++++  ||++|+++.++++||+||.++++++|++|.+.|+++||+|++++++++++++++|||+++|++
T Consensus        24 ~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~  101 (617)
T 3rg2_A           24 WQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVA  101 (617)
T ss_dssp             CCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             CCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeE
Confidence            456789999999887  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccch--------HHHHHH---------------------hc----c------
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHT--------YLLLEA---------------------LS----L------  132 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--------~~~~~~---------------------~~----~------  132 (330)
                      ++|+++.++.+++.++++..++++++++....        ..+...                     ..    .      
T Consensus       102 ~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (617)
T 3rg2_A          102 PVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPS  181 (617)
T ss_dssp             EEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCCSSCCCCCC
T ss_pred             EccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhcccccccCCCCC
Confidence            99999999999999999999999999986543        110000                     00    0      


Q ss_pred             ----Cc--------------------------------------------------------------------------
Q 048729          133 ----FP--------------------------------------------------------------------------  134 (330)
Q Consensus       133 ----~~--------------------------------------------------------------------------  134 (330)
                          ..                                                                          
T Consensus       182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~  261 (617)
T 3rg2_A          182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADP  261 (617)
T ss_dssp             CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSC
T ss_pred             CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCC
Confidence                00                                                                          


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       262 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~  341 (617)
T 3rg2_A          262 SATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLV  341 (617)
T ss_dssp             CHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEE
T ss_pred             CHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCccee
Confidence                                                                                            


Q ss_pred             -------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCce
Q 048729          135 -------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDI  207 (330)
Q Consensus       135 -------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~  207 (330)
                             .......+.|.|+.+.+++.|+|+ +|++++.+  +.|||+++|++++.||+++|+.+.+.|..++||+|||+
T Consensus       342 ~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl  418 (617)
T 3rg2_A          342 NYTRLDDSAEKIIHTQGYPMCPDDEVWVADA-EGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDL  418 (617)
T ss_dssp             EECCTTSCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEE
T ss_pred             ecccCCCcccccccCCCccCCCCceEEEECC-CCCCCCCC--CceEEEecCccccchhcCChhhhhhccCCCCceecCce
Confidence                   111223455666533347888887 89999999  88999999999999999999999999988999999999


Q ss_pred             EEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHH
Q 048729          208 GVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEII  287 (330)
Q Consensus       208 ~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  287 (330)
                      |++++||.++|+||.||+||++|++|+|.+||+.|.+||+|.+++|++..++..++.++++++..+.      .+..+++
T Consensus       419 ~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~------~~~~~l~  492 (617)
T 3rg2_A          419 ISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP------LRAVQVR  492 (617)
T ss_dssp             EEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC------CCHHHHH
T ss_pred             EEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCC------CCHHHHH
Confidence            9999999999999999999999999999999999999999999999999888778889999988764      5688999


Q ss_pred             HHHHh-cCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          288 EYCRA-RLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       288 ~~l~~-~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +.+++ +|+.|++|..++++++||+|++||+||++|++++.+
T Consensus       493 ~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~  534 (617)
T 3rg2_A          493 RFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS  534 (617)
T ss_dssp             HHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred             HHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence            99998 699999999999999999999999999999998753

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=5.2e-55  Score=414.63  Aligned_cols=314  Identities=26%  Similarity=0.355  Sum_probs=178.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCcEEE---e--CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 048729            8 NSANSTPLTTLGFLERAAAAYTDCPSLV---Y--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQ   82 (330)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~~~p~~~a~~---~--~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~   82 (330)
                      ...+....|+.++|.+.++++|+++|++   +  .++++||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~   92 (550)
T 3rix_A           13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPV   92 (550)
T ss_dssp             CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred             CCCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHH
Confidence            4556667899999999999999999976   4  4688999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc-------------------------------
Q 048729           83 FGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS-------------------------------  131 (330)
Q Consensus        83 la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-------------------------------  131 (330)
                      |||+++|++++|+++.++.+++.++++..++++++++......+.....                               
T Consensus        93 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (550)
T 3rix_A           93 LGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHL  172 (550)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHC
T ss_pred             HHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhccc
Confidence            9999999999999999999999999999999999998765543322100                               


Q ss_pred             ------------------cCc-----------------------------------------------------------
Q 048729          132 ------------------LFP-----------------------------------------------------------  134 (330)
Q Consensus       132 ------------------~~~-----------------------------------------------------------  134 (330)
                                        ...                                                           
T Consensus       173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~  252 (550)
T 3rix_A          173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTT  252 (550)
T ss_dssp             CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred             cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHH
Confidence                              000                                                           


Q ss_pred             ----------------------------------------------------------------------hH--------
Q 048729          135 ----------------------------------------------------------------------QR--------  136 (330)
Q Consensus       135 ----------------------------------------------------------------------~~--------  136 (330)
                                                                                            ..        
T Consensus       253 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~  332 (550)
T 3rix_A          253 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFH  332 (550)
T ss_dssp             HHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTT
T ss_pred             HHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcC
Confidence                                                                                  00        


Q ss_pred             -----------------------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhh
Q 048729          137 -----------------------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATR  193 (330)
Q Consensus       137 -----------------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~  193 (330)
                                             .....++|.|++|. +++|+|+++|++++.+  +.|||+++|++++.|||++|+.+.
T Consensus       333 ~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~  409 (550)
T 3rix_A          333 LPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFF-EAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATN  409 (550)
T ss_dssp             CSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHH
T ss_pred             CCccccccCcCccccceecCCCCCCCCCCcccccCCc-EEEEEeCCCCcCCCCC--CCeEEEEeCCCcchhhcCChhhhh
Confidence                                   01123345566664 7888897689999998  889999999999999999999999


Q ss_pred             ccccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecC
Q 048729          194 RCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKR  273 (330)
Q Consensus       194 ~~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  273 (330)
                      ..|..+|||+|||+|++|++|+++++||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++|++.+
T Consensus       410 ~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~  489 (550)
T 3rix_A          410 ALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEH  489 (550)
T ss_dssp             HHBCTTSCEEEEEEEEECTTCCEEEC------------------------------------------------------
T ss_pred             hhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecC
Confidence            99977999999999999999999999999999999999999999999999999999999999999888899999999887


Q ss_pred             CcccCCCCCHHHHHHHHHhcCCCCCCCc-eEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          274 DLELTKKPTEKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       274 ~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +..    .+.+++.++++++++.+..|. .++++++||+|++||++|++|++++.+
T Consensus       490 ~~~----~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~  541 (550)
T 3rix_A          490 GKT----MTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK  541 (550)
T ss_dssp             --------------------------------------------------------
T ss_pred             CCC----CCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHh
Confidence            765    667899999999999987554 699999999999999999999998854

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=5e-52  Score=393.77  Aligned_cols=306  Identities=25%  Similarity=0.325  Sum_probs=271.0

Q ss_pred             CCHHH-HHHHHHHhcCCCcEEEe--CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           15 LTTLG-FLERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        15 ~~~~~-~l~~~~~~~p~~~a~~~--~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      .|+.+ +|.+.++++ |++|+++  .++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus        25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav  103 (548)
T 2d1s_A           25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG  103 (548)
T ss_dssp             HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred             CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence            47899 899999999 9999998  5789999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH-------------------------------H-----h---c-
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE-------------------------------A-----L---S-  131 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~-------------------------------~-----~---~-  131 (330)
                      ++|+++.++.+++.++++..+++++++++.....+..                               .     .   . 
T Consensus       104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (548)
T 2d1s_A          104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSF  183 (548)
T ss_dssp             EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCCGGGC
T ss_pred             EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCCcccc
Confidence            9999999999999999999999999997654322110                               0     0   0 


Q ss_pred             c-----C-c-----------------------------------------------------------------------
Q 048729          132 L-----F-P-----------------------------------------------------------------------  134 (330)
Q Consensus       132 ~-----~-~-----------------------------------------------------------------------  134 (330)
                      .     . .                                                                       
T Consensus       184 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~G~~  263 (548)
T 2d1s_A          184 KTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFR  263 (548)
T ss_dssp             CCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHTTCE
T ss_pred             cccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHhcCcE
Confidence            0     1 1                                                                       


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       264 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG  343 (548)
T 2d1s_A          264 VVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYG  343 (548)
T ss_dssp             EEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEE
T ss_pred             EEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccc
Confidence                                                                                            


Q ss_pred             ------------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeE
Q 048729          135 ------------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWF  202 (330)
Q Consensus       135 ------------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~  202 (330)
                                  .......++|.|++|. +++|+|+++|++++.+  +.|||+++|++++.|||++|+.+.+.|..+|||
T Consensus       344 ~TE~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~  420 (548)
T 2d1s_A          344 LTETTSAIIITPEGDDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWL  420 (548)
T ss_dssp             CGGGSSEEEECCTTCCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCE
T ss_pred             cccccceeeecCcccCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeEEEECCHHHhhhhcCChHHhhhcccCCcEE
Confidence                        0001123456666675 7888886589999988  889999999999999999999999999779999


Q ss_pred             EeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCC
Q 048729          203 YTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPT  282 (330)
Q Consensus       203 ~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  282 (330)
                      +|||+|++|++|+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++|++.++..    .+
T Consensus       421 ~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~----~~  496 (548)
T 2d1s_A          421 HTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN----MT  496 (548)
T ss_dssp             EEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----CC
T ss_pred             EccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCC----CC
Confidence            99999999999999999999999999999999999999999999999999999998888889999999887654    67


Q ss_pred             HHHHHHHHHhcCCCCCCCc-eEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          283 EKEIIEYCRARLPRYMVPR-KVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       283 ~~~l~~~l~~~l~~~~~p~-~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .+++++.++++|+.|++|. .++++++||+|++||++|++|++++.+
T Consensus       497 ~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~  543 (548)
T 2d1s_A          497 EKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKK  543 (548)
T ss_dssp             HHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhh
Confidence            8999999999999999999 999999999999999999999999865

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=1.2e-52  Score=394.99  Aligned_cols=309  Identities=19%  Similarity=0.236  Sum_probs=264.9

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEe
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSS-VGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILN   93 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~-~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~   93 (330)
                      +|+.++|.++++.+||++|+++.++++||+||.++++++|++|.+ .|.++||+|+++++|++++++++|||+++|++++
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v   80 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI   80 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence            589999999999999999999999999999999999999999986 5888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEcccchH-------------HHHHHhcc-----------Cc---------------
Q 048729           94 NINTRLDAHTLSVLLQHSESKLVFVDHLHTY-------------LLLEALSL-----------FP---------------  134 (330)
Q Consensus        94 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~-------------~~~~~~~~-----------~~---------------  134 (330)
                      |+++.++.+++.++++..++++++++.....             .+......           ..               
T Consensus        81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg  160 (511)
T 3e7w_A           81 PVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKG  160 (511)
T ss_dssp             EEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEE
T ss_pred             ecCCCChHHHHHHHHHhCCCCEEEecccccchhcccccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCE
Confidence            9999999999999999999999998542210             11100000           00               


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       161 V~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~  240 (511)
T 3e7w_A          161 VQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTS  240 (511)
T ss_dssp             EEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEE
T ss_pred             EEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEe
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------hHH----HHhhcc
Q 048729          135 -------------------------------------------------------------------QRA----RLKARQ  143 (330)
Q Consensus       135 -------------------------------------------------------------------~~~----~~~~~~  143 (330)
                                                                                         ...    ....++
T Consensus       241 ~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~  320 (511)
T 3e7w_A          241 TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPV  320 (511)
T ss_dssp             CHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCC
T ss_pred             cHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCC
Confidence                                                                               000    011235


Q ss_pred             CCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcccc-CCC--eEEeCceEEEecCceEEEEe
Q 048729          144 GVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS-DNG--WFYTGDIGVMHADGYVEIKD  220 (330)
Q Consensus       144 G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~g--~~~TGD~~~~~~~G~l~~~G  220 (330)
                      |.|++|. +++|+|+ +|++++.+  +.|||+++|++++.|||++|+.+.+.|. .+|  ||+|||+|++ +||+++++|
T Consensus       321 G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~G  395 (511)
T 3e7w_A          321 GFAKPDM-NIFIMDE-EGQPLPEG--EKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQG  395 (511)
T ss_dssp             BEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEE
T ss_pred             cceeCCC-EEEEECC-CCCCCCCC--CceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEc
Confidence            6667775 8889998 79999998  8899999999999999999999998883 133  7999999999 499999999


Q ss_pred             cCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCC
Q 048729          221 RSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVP  300 (330)
Q Consensus       221 R~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  300 (330)
                      |.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++++..++.........+++++.++++|+.|++|
T Consensus       396 R~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P  475 (511)
T 3e7w_A          396 RLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIP  475 (511)
T ss_dssp             ESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSC
T ss_pred             cccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCC
Confidence            99999999999999999999999999999999999988878889999999887653110012478999999999999999


Q ss_pred             ceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          301 RKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       301 ~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +.++++++||+|++||++|++|++.+.+
T Consensus       476 ~~~~~v~~lP~t~~GKi~R~~L~~~~~~  503 (511)
T 3e7w_A          476 RKFIYQDHIQMTANGKIDRKRIGEEVLV  503 (511)
T ss_dssp             SEEEECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred             eeEEEeccCCCCCCcCccHHHHHhHHhh
Confidence            9999999999999999999999999875

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=9.4e-52  Score=393.42  Aligned_cols=311  Identities=27%  Similarity=0.373  Sum_probs=268.2

Q ss_pred             CCHHHHHHHHHHh-----cCCCcEEEeC-----CeeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHH
Q 048729           15 LTTLGFLERAAAA-----YTDCPSLVYN-----NTTYTWSETHRRCLQVASSLSSV-GIQRGHVVSVVAPNVPSMYELQF   83 (330)
Q Consensus        15 ~~~~~~l~~~~~~-----~p~~~a~~~~-----~~~~T~~el~~~~~~~a~~L~~~-g~~~gd~V~~~~~~~~~~~~~~l   83 (330)
                      .++.++|.+.++.     +||++|+++.     ++++||+||.++++++|++|.+. |+++||+|+++++|++++++++|
T Consensus        38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~l  117 (570)
T 3c5e_A           38 NFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVIL  117 (570)
T ss_dssp             CHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHH
T ss_pred             cHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3567999999999     9999999972     37899999999999999999988 99999999999999999999999


Q ss_pred             HhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHh------------------------------cc-
Q 048729           84 GVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL------------------------------SL-  132 (330)
Q Consensus        84 a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~------------------------------~~-  132 (330)
                      ||+++|++++|+++.++.+++.++++..+++++++++.....+....                              .. 
T Consensus       118 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (570)
T 3c5e_A          118 GCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTT  197 (570)
T ss_dssp             HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHHSCSC
T ss_pred             HHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhccccc
Confidence            99999999999999999999999999999999999876544332100                              00 


Q ss_pred             ---Cc---------------------------------------------------------------------------
Q 048729          133 ---FP---------------------------------------------------------------------------  134 (330)
Q Consensus       133 ---~~---------------------------------------------------------------------------  134 (330)
                         ..                                                                           
T Consensus       198 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~  277 (570)
T 3c5e_A          198 HHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTF  277 (570)
T ss_dssp             CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEE
T ss_pred             ccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEE
Confidence               00                                                                           


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       278 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~T  357 (570)
T 3c5e_A          278 VHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQT  357 (570)
T ss_dssp             EECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEET
T ss_pred             EecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchh
Confidence                                                                                            


Q ss_pred             ----------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEe-----cCcccccccCCchhhhccccCC
Q 048729          135 ----------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLR-----GGCVTVGYFKDKEATRRCISDN  199 (330)
Q Consensus       135 ----------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~~  199 (330)
                                .......++|.|++|. +++|+|+ +|++++.+  +.|||+++     |++++.||+++|+.+.+.|. +
T Consensus       358 E~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~d~-~g~~~~~G--~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~  432 (570)
T 3c5e_A          358 ETGLTCMVSKTMKIKPGYMGTAASCY-DVQIIDD-KGNVLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-G  432 (570)
T ss_dssp             TTEEEEECCTTSCCCTTCCCEECTTC-CEEEECT-TSCBCCTT--CCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-T
T ss_pred             hcccceecCcccccCCCcccccCCCc-eEEEECC-CCCCCCCC--CCCeeEEeccCCCCchhhccccCChhHhhhhhc-C
Confidence                      0011224566677775 7888887 79999988  88999999     99999999999999999887 8


Q ss_pred             CeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCC
Q 048729          200 GWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTK  279 (330)
Q Consensus       200 g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  279 (330)
                      |||+|||+|++|+||+++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|++.++.....
T Consensus       433 ~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~  512 (570)
T 3c5e_A          433 DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHD  512 (570)
T ss_dssp             TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSC
T ss_pred             CccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcc
Confidence            99999999999999999999999999999999999999999999999999999999998877888999999876531100


Q ss_pred             -CCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhcC
Q 048729          280 -KPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSVS  330 (330)
Q Consensus       280 -~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~  330 (330)
                       ....+++++.++++|+.|++|+.|+++++||+|++||++|++|++.+.+.|
T Consensus       513 ~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~s  564 (570)
T 3c5e_A          513 PEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMS  564 (570)
T ss_dssp             HHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC--
T ss_pred             hHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhhh
Confidence             023578999999999999999999999999999999999999999886653

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1e-52  Score=403.14  Aligned_cols=301  Identities=16%  Similarity=0.135  Sum_probs=249.5

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      ...|+.++|.++++++||++|+++.++++||+||.++++++|++|.+.|+++||+|++++++++++++++|||+++|+++
T Consensus        25 ~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~  104 (620)
T 4dg8_A           25 AHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHY  104 (620)
T ss_dssp             GSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEE
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH---------------------hccCc-----------------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA---------------------LSLFP-----------------  134 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~---------------------~~~~~-----------------  134 (330)
                      +|+++.++.+++.++++..++++++++..........                     .....                 
T Consensus       105 vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~  184 (620)
T 4dg8_A          105 LYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIAC  184 (620)
T ss_dssp             EECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTSCEEEGGGCCCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEE
T ss_pred             EeeCccChHHHHHHHHHhCCCcEEEecCcccccccCCceeeeccCCcCCccccCCCCCCCCeEEEEECCCccccCeEEEE
Confidence            9999999999999999999999999643221100000                     00000                 


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       185 th~~l~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~  264 (620)
T 4dg8_A          185 THAGITRLCLGQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLF  264 (620)
T ss_dssp             EHHHHHHHHSSCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHH
T ss_pred             chHHHHHHHHHHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------hHHHHhhccCCcccCcee
Q 048729          135 --------------------------------------------------------------QRARLKARQGVKTVGLAE  152 (330)
Q Consensus       135 --------------------------------------------------------------~~~~~~~~~G~~~~g~te  152 (330)
                                                                                    .......++|.|++|. +
T Consensus       265 ~~l~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~-~  343 (620)
T 4dg8_A          265 NTLVDLDPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGT-A  343 (620)
T ss_dssp             HHHHHHCGGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTE-E
T ss_pred             HHHHhcChhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCc-E
Confidence                                                                          0011123567777775 8


Q ss_pred             EEEeCCCCCcc-cCCCCceecEEEEecCcccccccCCchhhhccccCC-------CeEEeCceEEEecCceEEEEecCCC
Q 048729          153 VDVVNPETGES-VKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDN-------GWFYTGDIGVMHADGYVEIKDRSKD  224 (330)
Q Consensus       153 ~~i~d~~~g~~-~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~-------g~~~TGD~~~~~~~G~l~~~GR~dd  224 (330)
                      ++|+|+ ++.+ ++.+  +.|||+++|+++++||+++|+.+.+.|..+       +||+|||+|++|+||+++|+||.||
T Consensus       344 ~~i~d~-~~~~~~~~g--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd  420 (620)
T 4dg8_A          344 VLLLDE-HGQEIAEPD--RAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDG  420 (620)
T ss_dssp             EEEECT-TSCBCCSSS--CCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSS
T ss_pred             EEEECc-cCCCCCCCC--CceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCC
Confidence            889998 6666 6777  889999999999999999999999988643       7999999999999999999999999


Q ss_pred             eEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEE
Q 048729          225 VIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVV  304 (330)
Q Consensus       225 ~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~  304 (330)
                      +||++|++|+|.+||+.|.+||+|.+++|++.+++..+. ++++++...          .++.+.+.++|+.|++|..++
T Consensus       421 ~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~~~----------~~~~~~l~~~Lp~y~~P~~~~  489 (620)
T 4dg8_A          421 QVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTGKA----------DASPQALLRQLPTWQRPHACV  489 (620)
T ss_dssp             EEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEECT----------TCCCHHHHHHSCGGGSCSEEE
T ss_pred             EEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEecCh----------HHHHHHHHHhChhhcCCcEEE
Confidence            999999999999999999999999999999988764333 344443222          123345677899999999999


Q ss_pred             EccCCCCCCCCcccHHHHHHHhhh
Q 048729          305 FSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       305 ~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++++||+|++||+||++|++.+.+
T Consensus       490 ~v~~lP~t~~GKidR~~L~~~~~~  513 (620)
T 4dg8_A          490 RVEALPLTAHGKLDRAALLRRLEE  513 (620)
T ss_dssp             ECSSCCCC----CCHHHHHHHTCS
T ss_pred             EECcCCCCcccCHhHHHHhhcccc
Confidence            999999999999999999987753

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1.4e-51  Score=397.88  Aligned_cols=309  Identities=23%  Similarity=0.333  Sum_probs=265.9

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEe------CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhc
Q 048729           15 LTTLGFLERAAAAYTDCPSLVY------NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMS   88 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~------~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~   88 (330)
                      .++.++|.++++.+||++|+++      .++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus        76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~  155 (652)
T 1pg4_A           76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI  155 (652)
T ss_dssp             CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence            3577889899999999999997      3478999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH---------HHH--------------------------------
Q 048729           89 GAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY---------LLL--------------------------------  127 (330)
Q Consensus        89 G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~--------------------------------  127 (330)
                      |++++|+++.++++++.+++++.+++++++++....         .+.                                
T Consensus       156 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  235 (652)
T 1pg4_A          156 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL  235 (652)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEE
T ss_pred             CcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCce
Confidence            999999999999999999999999999998754311         000                                


Q ss_pred             ---HHh---cc-Cc------------------------------------------------------------------
Q 048729          128 ---EAL---SL-FP------------------------------------------------------------------  134 (330)
Q Consensus       128 ---~~~---~~-~~------------------------------------------------------------------  134 (330)
                         +..   .. ..                                                                  
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~  315 (652)
T 1pg4_A          236 WWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSY  315 (652)
T ss_dssp             EHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH
T ss_pred             eHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHH
Confidence               000   00 00                                                                  


Q ss_pred             ------------------------------------------------------------------------------hH
Q 048729          135 ------------------------------------------------------------------------------QR  136 (330)
Q Consensus       135 ------------------------------------------------------------------------------~~  136 (330)
                                                                                                    ..
T Consensus       316 ~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~  395 (652)
T 1pg4_A          316 LLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW  395 (652)
T ss_dssp             TTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHH
T ss_pred             HHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHH
Confidence                                                                                          00


Q ss_pred             -----------------------------------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEec--C
Q 048729          137 -----------------------------------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRG--G  179 (330)
Q Consensus       137 -----------------------------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~--~  179 (330)
                                                         .....++|.|++|. +++|+|+ +|++++.+  +.|||+++|  +
T Consensus       396 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~-~v~i~d~-~g~~v~~g--~~GEl~i~g~~p  471 (652)
T 1pg4_A          396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGV-QPALVDN-EGHPQEGA--TEGNLVITDSWP  471 (652)
T ss_dssp             HHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTC-CEEEECT-TCCBCCSS--EEEEEEECSCCT
T ss_pred             HHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCC-eEEEECC-CCCCcCCC--ceEEEEEccCCC
Confidence                                               01124566777785 8899998 89999988  899999999  7


Q ss_pred             cccccccCCchhhhcccc--CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeec
Q 048729          180 CVTVGYFKDKEATRRCIS--DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARP  257 (330)
Q Consensus       180 ~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~  257 (330)
                      +++.|||++++.+...+.  .+|||+|||+|++|+||+++|+||+||+||++|++|+|.+||++|.+||+|.+++|++.+
T Consensus       472 ~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~  551 (652)
T 1pg4_A          472 GQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIP  551 (652)
T ss_dssp             TCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEE
T ss_pred             chhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEE
Confidence            899999999988776653  378999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          258 DMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       258 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++..++.++++|+++++.... ....+++++.++++|++|++|+.|+++++||+|++||++|++|++++.+
T Consensus       552 ~~~~g~~l~a~Vv~~~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~  621 (652)
T 1pg4_A          552 HAIKGQAIYAYVTLNHGEEPS-PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG  621 (652)
T ss_dssp             ETTTEEEEEEEEEECTTCCCC-HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred             cCCCCeEEEEEEEECCCCCCC-HHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhC
Confidence            887888999999998765310 0125789999999999999999999999999999999999999998864

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=6.3e-53  Score=424.61  Aligned_cols=308  Identities=27%  Similarity=0.450  Sum_probs=182.5

Q ss_pred             CCCHHHHHHHHHHhcCCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcE
Q 048729           14 PLTTLGFLERAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAI   91 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~   91 (330)
                      ..|+.++|.++++.+||++|+++.  ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus        60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~  139 (979)
T 3tsy_A           60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT  139 (979)
T ss_dssp             TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence            479999999999999999999986  689999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhc------------------------------------cC--
Q 048729           92 LNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALS------------------------------------LF--  133 (330)
Q Consensus        92 ~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~------------------------------------~~--  133 (330)
                      ++|+++.++++++.+++++.++++++++..+...+.....                                    ..  
T Consensus       140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (979)
T 3tsy_A          140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDS  219 (979)
T ss_dssp             EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEGGGTSSCCSGGGGGSCC
T ss_pred             EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccHHHHhhccccccccCCc
Confidence            9999999999999999999999999998755433221100                                    00  


Q ss_pred             ----c---------------------------------------------------------------------------
Q 048729          134 ----P---------------------------------------------------------------------------  134 (330)
Q Consensus       134 ----~---------------------------------------------------------------------------  134 (330)
                          +                                                                           
T Consensus       220 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~  299 (979)
T 3tsy_A          220 VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAI  299 (979)
T ss_dssp             SCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEE
T ss_pred             CCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEE
Confidence                0                                                                           


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       300 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~  379 (979)
T 3tsy_A          300 LIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGM  379 (979)
T ss_dssp             EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEEC
T ss_pred             EEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeech
Confidence                                                                                            


Q ss_pred             -h---------------HHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC
Q 048729          135 -Q---------------RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD  198 (330)
Q Consensus       135 -~---------------~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~  198 (330)
                       +               ......++|.|++|. +++|+|+++|++++.+  +.|||+++|++++.|||++|+.+.+.|..
T Consensus       380 TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~g~~v~~GY~~~p~~t~~~f~~  456 (979)
T 3tsy_A          380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICIRGHQIMKGYLNNPAATAETIDK  456 (979)
T ss_dssp             GGGCSEEEECGGGSSSCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred             hhhhHHHHhCCCCCCCccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEEECCCccccccCChhhhhhhccC
Confidence             0               000123457777775 8899997689999998  88999999999999999999999999988


Q ss_pred             CCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccC
Q 048729          199 NGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELT  278 (330)
Q Consensus       199 ~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  278 (330)
                      +|||+|||+|++|++|+++|+||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.++++|+..++..  
T Consensus       457 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~--  534 (979)
T 3tsy_A          457 DGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSE--  534 (979)
T ss_dssp             TSCEEEEEEEEECTTSCEEEEEESCC------------------------------------------------------
T ss_pred             CCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCC--
Confidence            999999999999999999999999999999999999999999999999999999999998888889999998877654  


Q ss_pred             CCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          279 KKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       279 ~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                        .+.+++++.++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus       535 --~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~  582 (979)
T 3tsy_A          535 --LSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLAN  582 (979)
T ss_dssp             --------------------------------------------------
T ss_pred             --CCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHh
Confidence              567899999999999999999999999999999999999999998864

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.6e-51  Score=386.64  Aligned_cols=294  Identities=26%  Similarity=0.412  Sum_probs=236.2

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN   94 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~   94 (330)
                      +|+.++|.++++++||++|+++.++++||+||.++++++|++|.+.   +||+|+++++|++++++++|||+++|++++|
T Consensus         1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp   77 (501)
T 3ipl_A            1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM   77 (501)
T ss_dssp             --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence            4778899999999999999999999999999999999999999975   8999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEcccchHHH---------H----------------------------------HHhc
Q 048729           95 INTRLDAHTLSVLLQHSESKLVFVDHLHTYLL---------L----------------------------------EALS  131 (330)
Q Consensus        95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~---------~----------------------------------~~~~  131 (330)
                      +++.++++++.++++..++++++++.......         .                                  ....
T Consensus        78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (501)
T 3ipl_A           78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILN  157 (501)
T ss_dssp             CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHHHHTC
T ss_pred             cCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCcccccc
Confidence            99999999999999999999999875432110         0                                  0000


Q ss_pred             -cC-c---------------------------------------------------------------------------
Q 048729          132 -LF-P---------------------------------------------------------------------------  134 (330)
Q Consensus       132 -~~-~---------------------------------------------------------------------------  134 (330)
                       .. .                                                                           
T Consensus       158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~  237 (501)
T 3ipl_A          158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK  237 (501)
T ss_dssp             CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred             cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence             00 0                                                                           


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       238 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  317 (501)
T 3ipl_A          238 FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTA  317 (501)
T ss_dssp             CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEE
T ss_pred             CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeec
Confidence                                                                                            


Q ss_pred             ---hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEe
Q 048729          135 ---QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH  211 (330)
Q Consensus       135 ---~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~  211 (330)
                         .......++|.|++|. +++|+|++      .+  +.|||+++|+.++.||+++++.+.. |. +|||+|||+|++|
T Consensus       318 ~~~~~~~~~~~~G~p~~~~-~~~i~d~~------~~--~~GEl~v~g~~~~~gY~~~~~~t~~-~~-~g~~~TGDl~~~~  386 (501)
T 3ipl_A          318 TPEMLHARPDTVGMPSANV-DVKIKNPN------KE--GHGELMIKGANVMNGYLYPTDLTGT-FE-NGYFNTGDIAEID  386 (501)
T ss_dssp             CHHHHHHCTTCCBEECTTC-EEEEESCC------SS--CCEEEEEESTTSCSCCSBSTTCCCS-EE-TTEEEEEEEEEEC
T ss_pred             CccccccCCCCCCCCCCCc-EEEEecCC------CC--CccEEEEeccchhhhhCcChhhcch-hc-CCceecCCEEEEc
Confidence               1112234455566664 66666652      22  6699999999999999999988877 55 8999999999999


Q ss_pred             cCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHH
Q 048729          212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR  291 (330)
Q Consensus       212 ~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~  291 (330)
                      ++|+++++||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.+.++++....      .+.+++++.++
T Consensus       387 ~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~------~~~~~l~~~l~  460 (501)
T 3ipl_A          387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD------ISKAQLIAYLS  460 (501)
T ss_dssp             TTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC------CCHHHHHHHHH
T ss_pred             CCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCC------CCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998888888888886443      67899999999


Q ss_pred             hcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       292 ~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++|+.|++|+.|+++++||+|++||++|++|++...+
T Consensus       461 ~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~  497 (501)
T 3ipl_A          461 KHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH  497 (501)
T ss_dssp             HHSCGGGSCSEEEECSSCC------------------
T ss_pred             hhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence            9999999999999999999999999999999987654

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=6.1e-51  Score=385.07  Aligned_cols=303  Identities=25%  Similarity=0.347  Sum_probs=259.7

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEEee
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNN   94 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~~~   94 (330)
                      .++.++|.+.++ +||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        24 ~~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vp  102 (529)
T 2v7b_A           24 NFAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVV  102 (529)
T ss_dssp             CHHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEE
T ss_pred             eHHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEe
Confidence            348899999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH------------------------------hc-cC---------c
Q 048729           95 INTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA------------------------------LS-LF---------P  134 (330)
Q Consensus        95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~------------------------------~~-~~---------~  134 (330)
                      +++.++.+++.++++..+++++++++.....+...                              .. ..         +
T Consensus       103 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (529)
T 2v7b_A          103 ANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGC  182 (529)
T ss_dssp             CCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSSCCCCCT
T ss_pred             cCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcccccCCCC
Confidence            99999999999999999999999986544322111                              00 00         0


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       183 ~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~  262 (529)
T 2v7b_A          183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPT  262 (529)
T ss_dssp             TSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCC
T ss_pred             CCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCC
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------------h------
Q 048729          135 -------------------------------------------------------------------------Q------  135 (330)
Q Consensus       135 -------------------------------------------------------------------------~------  135 (330)
                                                                                               +      
T Consensus       263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~  342 (529)
T 2v7b_A          263 ADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFL  342 (529)
T ss_dssp             HHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEE
T ss_pred             HHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceee
Confidence                                                                                     0      


Q ss_pred             ----HHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEe
Q 048729          136 ----RARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMH  211 (330)
Q Consensus       136 ----~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~  211 (330)
                          ......++|.|++|. +++|+|+ +|++++.+  +.|||+++|++++.||+++++.+...|. +|||+|||++++|
T Consensus       343 ~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TGDl~~~~  417 (529)
T 2v7b_A          343 SNRAGAVEYGTTGRPVPGY-EIELRDE-AGHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRL  417 (529)
T ss_dssp             ECCTTCCCTTSCCEECTTC-EEEEECT-TSCBCCTT--SCEEEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEEEEEEEC
T ss_pred             ccccCCCccCCcccCCCCC-EEEEECC-CCCCCCCC--CccEEEEecCCcccccCCChHHHHHhhh-cCCcccCceEEEC
Confidence                001123567777885 8999997 89999988  8899999999999999999999999887 8999999999999


Q ss_pred             cCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHH
Q 048729          212 ADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR  291 (330)
Q Consensus       212 ~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~  291 (330)
                      ++|++++.||.||+||++|++|+|.+||+.|.+||+|.+++|++. ++..++.+.+++++.++.... ....+++++.++
T Consensus       418 ~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~-~~~~~~l~~~l~  495 (529)
T 2v7b_A          418 PNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPS-EILAEELKAFVK  495 (529)
T ss_dssp             TTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCC-HHHHHHHHHHHH
T ss_pred             CCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcc-hhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998 555567888999887653200 013468999999


Q ss_pred             hcCCCCCCCceEEEccCCCCCCCCcccHHHHHHH
Q 048729          292 ARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREF  325 (330)
Q Consensus       292 ~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~  325 (330)
                      ++|+.|++|+.++++++||+|++||++|++|+++
T Consensus       496 ~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~  529 (529)
T 2v7b_A          496 DRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ  529 (529)
T ss_dssp             TTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC-
T ss_pred             hhcchhhCCeEEEEeccCCCCCccchhHHhHhhC
Confidence            9999999999999999999999999999999863

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=4.7e-52  Score=390.24  Aligned_cols=301  Identities=26%  Similarity=0.345  Sum_probs=239.1

Q ss_pred             CCCHHHHHHHHHHhcCC-CcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           14 PLTTLGFLERAAAAYTD-CPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        14 ~~~~~~~l~~~~~~~p~-~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      -.++.++|.+.++++|+ ++|+++.++++||+||.++++++|++|.     .||+|+++++|++++++++|||+++|+++
T Consensus        21 ~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~   95 (505)
T 3nyq_A           21 MSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAA   95 (505)
T ss_dssp             ---CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCE
T ss_pred             cchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence            45788899999999987 9999999999999999999999998874     48899999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccch--HHHHHHh---------ccC------c---------------------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHT--YLLLEAL---------SLF------P---------------------  134 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~--~~~~~~~---------~~~------~---------------------  134 (330)
                      +|+++.++.+++.++++..+++++++++...  ..+....         ...      .                     
T Consensus        96 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~  175 (505)
T 3nyq_A           96 VPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVI  175 (505)
T ss_dssp             EEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTCCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEE
T ss_pred             EEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccccccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEE
Confidence            9999999999999999999999999975321  0000000         000      0                     


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       176 sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~t~~~~~P~~~~  255 (505)
T 3nyq_A          176 PRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYH  255 (505)
T ss_dssp             EHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHHTTTCCEEEECHHHHH
T ss_pred             eHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHHhhCCeEEEehHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------hHHHHhhccCCcccCcee
Q 048729          135 --------------------------------------------------------------QRARLKARQGVKTVGLAE  152 (330)
Q Consensus       135 --------------------------------------------------------------~~~~~~~~~G~~~~g~te  152 (330)
                                                                                    .......++|.|++|. +
T Consensus       256 ~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~-~  334 (505)
T 3nyq_A          256 RIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGV-E  334 (505)
T ss_dssp             HHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTC-E
T ss_pred             HHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCC-E
Confidence                                                                          0011123456677775 7


Q ss_pred             EEEeCCCCCcccCC-CCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCceEEEEecC-CCeEEeCC
Q 048729          153 VDVVNPETGESVKR-DGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIKDRS-KDVIISGG  230 (330)
Q Consensus       153 ~~i~d~~~g~~~~~-~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~GR~-dd~ik~~G  230 (330)
                      ++|+|+ +|++++. ++++.|||+++|++++.|||++|+.+.+.|..+|||+|||+|++|+||.++++||+ ||+||++|
T Consensus       335 ~~i~d~-~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G  413 (505)
T 3nyq_A          335 LRLVEE-DGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGG  413 (505)
T ss_dssp             EEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETT
T ss_pred             EEEECC-CCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCC
Confidence            888888 7888876 11288999999999999999999999999988999999999999999999999998 58999999


Q ss_pred             eecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCC
Q 048729          231 ENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELP  310 (330)
Q Consensus       231 ~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP  310 (330)
                      ++|+|.+||+.|.++|+|.+++|++.+++..+++++++|+..+....   .+.+++++.++++|+.|++|+.|+++++||
T Consensus       414 ~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~---~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP  490 (505)
T 3nyq_A          414 YKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAP---PALGTLADHVAARLAPHKRPRVVRYLDAVP  490 (505)
T ss_dssp             EEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSC---CCHHHHHHHHHHHTCGGGSCSEEEECSCCC
T ss_pred             EEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCC---CCHHHHHHHHHhhCCCCcCccEEEEECCCC
Confidence            99999999999999999999999999998888999999998764321   678999999999999999999999999999


Q ss_pred             CCCCCcccHHHHHH
Q 048729          311 KTSTGKIQKYLLRE  324 (330)
Q Consensus       311 ~t~~GKv~r~~l~~  324 (330)
                      +|++||++|++|++
T Consensus       491 ~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          491 RNDMGKIMKRALNR  504 (505)
T ss_dssp             C-------------
T ss_pred             CCCCcCeeHHhhcc
Confidence            99999999999986

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.5e-50  Score=391.13  Aligned_cols=311  Identities=23%  Similarity=0.381  Sum_probs=262.6

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEe------CCeeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729           15 LTTLGFLERAAAAYTDCPSLVY------NNTTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPM   87 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~------~~~~~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~~~~~la~~~   87 (330)
                      .++.++|.++++.+||++|+++      .++++||+||.++++++|++|+ +.|+++||+|+++++|++++++++|||++
T Consensus        82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~  161 (663)
T 1ry2_A           82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR  161 (663)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            4678899999999999999997      3478999999999999999999 99999999999999999999999999999


Q ss_pred             cCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchH---------HHHH------------------------------
Q 048729           88 SGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTY---------LLLE------------------------------  128 (330)
Q Consensus        88 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~~------------------------------  128 (330)
                      +|++++|+++.++++++.+++++.+++++++++....         .+..                              
T Consensus       162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  241 (663)
T 1ry2_A          162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDL  241 (663)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEE
T ss_pred             cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccc
Confidence            9999999999999999999999999999999765321         0100                              


Q ss_pred             ----Hhc---c-Cc------------------------------------------------------------------
Q 048729          129 ----ALS---L-FP------------------------------------------------------------------  134 (330)
Q Consensus       129 ----~~~---~-~~------------------------------------------------------------------  134 (330)
                          ...   . ..                                                                  
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~  321 (663)
T 1ry2_A          242 DWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTY  321 (663)
T ss_dssp             EHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHH
T ss_pred             cHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHH
Confidence                000   0 00                                                                  


Q ss_pred             ------------------------------------------------------------------------------hH
Q 048729          135 ------------------------------------------------------------------------------QR  136 (330)
Q Consensus       135 ------------------------------------------------------------------------------~~  136 (330)
                                                                                                    ..
T Consensus       322 ~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~  401 (663)
T 1ry2_A          322 VVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVW  401 (663)
T ss_dssp             TTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHH
T ss_pred             HHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHH
Confidence                                                                                          00


Q ss_pred             ------------------------------------HHHhhccCCcccCceeEEEeCCCCCcccCC-CCceecEEEEec-
Q 048729          137 ------------------------------------ARLKARQGVKTVGLAEVDVVNPETGESVKR-DGVSLGEVVLRG-  178 (330)
Q Consensus       137 ------------------------------------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~-~~~~~Gel~v~~-  178 (330)
                                                          .....++|.|++|. +++|+|+++|++++. +  +.|||+++| 
T Consensus       402 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~-~v~i~d~~~g~~v~~~g--~~Gel~i~g~  478 (663)
T 1ry2_A          402 EWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGI-DAVVLDPNTGEELNTSH--AEGVLAVKAA  478 (663)
T ss_dssp             HHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTC-CEEEECSSSTTCEECSS--CEEEEEESSC
T ss_pred             HHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCC-eEEEEcCCCCCcCCCCC--cceEEEEecC
Confidence                                                01123456667775 788888767888887 6  789999999 


Q ss_pred             -CcccccccCCchhhhcccc--CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEe
Q 048729          179 -GCVTVGYFKDKEATRRCIS--DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVA  255 (330)
Q Consensus       179 -~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~  255 (330)
                       |+++.|||++++.+.+.|.  .+|||+|||+|++|+||+++|+||+||+||++|++|++.+||++|.+||+|.+++|++
T Consensus       479 ~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg  558 (663)
T 1ry2_A          479 WPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVG  558 (663)
T ss_dssp             CTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEEC
T ss_pred             CCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEE
Confidence             5899999999998877663  2789999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCceeEEEEEecCCcc---c-C--CCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          256 RPDMFWGEIPCAFVSLKRDLE---L-T--KKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       256 ~~~~~~~~~~~~~v~~~~~~~---~-~--~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      .+++..++.++++|+++++..   . +  .....+++++.++++|++|++|+.|+++++||+|++||++|+.|++++.+
T Consensus       559 ~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~  637 (663)
T 1ry2_A          559 FNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG  637 (663)
T ss_dssp             CCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred             EecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcC
Confidence            998888889999999887643   1 0  00236889999999999999999999999999999999999999998754

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=5.1e-52  Score=395.17  Aligned_cols=315  Identities=19%  Similarity=0.243  Sum_probs=170.0

Q ss_pred             CCCCCCHHHHHHHHHHhcCCCcEEEeCC----------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Q 048729           11 NSTPLTTLGFLERAAAAYTDCPSLVYNN----------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYE   80 (330)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~p~~~a~~~~~----------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~   80 (330)
                      ....+|+.++|.++++++||++|+++.+          +++||+||.++++++|++|.+.|+ +||+|+++++|++++++
T Consensus        16 ~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~   94 (562)
T 3ite_A           16 YTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFA   94 (562)
T ss_dssp             --CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHH
T ss_pred             ecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHH
Confidence            3567899999999999999999999743          789999999999999999999999 79999999999999999


Q ss_pred             HHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHH--------------------HHHhccC-------
Q 048729           81 LQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLL--------------------LEALSLF-------  133 (330)
Q Consensus        81 ~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~--------------------~~~~~~~-------  133 (330)
                      ++|||+++|++++|+++.++.+++.++++..++++++++......+                    .......       
T Consensus        95 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (562)
T 3ite_A           95 IIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPE  174 (562)
T ss_dssp             HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHHSCCSCCCCCCCT
T ss_pred             HHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhcccccccccccCCCC
Confidence            9999999999999999999999999999999999998864321110                    0000000       


Q ss_pred             ---c----------------------------------------------------------------------------
Q 048729          134 ---P----------------------------------------------------------------------------  134 (330)
Q Consensus       134 ---~----------------------------------------------------------------------------  134 (330)
                         .                                                                            
T Consensus       175 ~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~  254 (562)
T 3ite_A          175 NLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVT  254 (562)
T ss_dssp             TSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEe
Confidence               0                                                                            


Q ss_pred             -------------------------------------------------------hH-----------------------
Q 048729          135 -------------------------------------------------------QR-----------------------  136 (330)
Q Consensus       135 -------------------------------------------------------~~-----------------------  136 (330)
                                                                             ..                       
T Consensus       255 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~  334 (562)
T 3ite_A          255 GERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIG  334 (562)
T ss_dssp             CCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCGGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSC
T ss_pred             cchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheee
Confidence                                                                   00                       


Q ss_pred             --------HHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCC--eEEeCc
Q 048729          137 --------ARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNG--WFYTGD  206 (330)
Q Consensus       137 --------~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g--~~~TGD  206 (330)
                              .....++|.|++|. +++++|++++.+++.+  +.|||+++|++++.|||++|+.+...+. +|  ||+|||
T Consensus       335 ~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g~~w~~TGD  410 (562)
T 3ite_A          335 CSAGRILPDSDTRCIGHPLGDS-VAHVLAPGSNEHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDI-NGRKMYRTGD  410 (562)
T ss_dssp             SEEEECCTTSCTTEEEEECTTC-EEEEECTTSSCBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEE-TTEEEEEEEE
T ss_pred             eeeeeecCCCCCccccccCCCC-eEEEEeCCCCCCCCCC--CceEEEEeccccchhhCCCccccccccC-CCCEEEecCC
Confidence                    01122345555554 6778887678889988  8899999999999999999998876654 55  999999


Q ss_pred             eEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcC-cCcceEEEEeecCCCCCceeEEEEEecCCcccC-------
Q 048729          207 IGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSI-TAVNEAAVVARPDMFWGEIPCAFVSLKRDLELT-------  278 (330)
Q Consensus       207 ~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-------  278 (330)
                      +|++|+||+++|+||.||+||++|++|+|.+||++|.++ |.+.+++|++..++..++..++.++...+....       
T Consensus       411 lg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  490 (562)
T 3ite_A          411 IVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWIN  490 (562)
T ss_dssp             EEEECTTSCEEEEEEC----------------------------------------------------------------
T ss_pred             EEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccc
Confidence            999999999999999999999999999999999999998 788899988888876666665555544432210       


Q ss_pred             --CCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCC-CCCcccHHHHHHHhhhcC
Q 048729          279 --KKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKT-STGKIQKYLLREFAKSVS  330 (330)
Q Consensus       279 --~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t-~~GKv~r~~l~~~~~~~~  330 (330)
                        .....++++++++++|+.|++|+.|+++++||+| ++||++|++|++++++++
T Consensus       491 ~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~~  545 (562)
T 3ite_A          491 ENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTLS  545 (562)
T ss_dssp             -------------------------------------------------------
T ss_pred             cchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhccC
Confidence              0123458999999999999999999999999998 899999999999997653

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=1.9e-50  Score=416.26  Aligned_cols=306  Identities=23%  Similarity=0.310  Sum_probs=268.6

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcC
Q 048729           10 ANSTPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSG   89 (330)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G   89 (330)
                      .+.+..++.++|.++++++||++|+++.++++||+||.++++++|++|.+.|+++||+|++++++++++++++|||+++|
T Consensus       459 ~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG  538 (1304)
T 2vsq_A          459 QAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAG  538 (1304)
T ss_dssp             CCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHC
Confidence            34445789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHH---------------hcc--------Cc------------
Q 048729           90 AILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEA---------------LSL--------FP------------  134 (330)
Q Consensus        90 ~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~---------------~~~--------~~------------  134 (330)
                      ++++|+++.++.+++.+++++.++++++++......+...               ...        .+            
T Consensus       539 ~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayiiyTSGS  618 (1304)
T 2vsq_A          539 AAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGT  618 (1304)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGGGGGSCSSCCCCCCCTTSEEEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccccccccccCCCCCCCCCCCeEEEEeCCCC
Confidence            9999999999999999999999999999976543221000               000        00            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       619 TG~PKgV~~~h~~l~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~v  698 (1304)
T 2vsq_A          619 TGKPKGNITTHANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENV  698 (1304)
T ss_dssp             SSSCEEEEEEHHHHHHHHSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEehHHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCC
Confidence                                                                                            


Q ss_pred             ----------------------------------------h--------------------------------HHHHhhc
Q 048729          135 ----------------------------------------Q--------------------------------RARLKAR  142 (330)
Q Consensus       135 ----------------------------------------~--------------------------------~~~~~~~  142 (330)
                                                              .                                ......+
T Consensus       699 t~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~  778 (1304)
T 2vsq_A          699 NVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLP  778 (1304)
T ss_dssp             CEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCC
T ss_pred             cEEEccHHHHHHHHhhchhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCC
Confidence                                                    0                                0001124


Q ss_pred             cCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccC------CCeEEeCceEEEecCceE
Q 048729          143 QGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISD------NGWFYTGDIGVMHADGYV  216 (330)
Q Consensus       143 ~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~g~~~TGD~~~~~~~G~l  216 (330)
                      +|+|+.|. ++.|+|+ +++++|.|  +.|||+|+|+++++||+++|+.+.+.|..      ++||+|||+|++++||.+
T Consensus       779 iG~p~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l  854 (1304)
T 2vsq_A          779 IGKPISNA-SVYILNE-QSQLQPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTI  854 (1304)
T ss_dssp             CBEECTTE-EEEEECT-TSCBCCTT--CCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCE
T ss_pred             CceeeCCC-EEEEECC-CcCCCCCC--CceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeE
Confidence            56677774 8888898 89999998  88999999999999999999999988842      459999999999999999


Q ss_pred             EEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCC
Q 048729          217 EIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPR  296 (330)
Q Consensus       217 ~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~  296 (330)
                      +|+||+||+||++|++|+|.+||+.|.++|+|.+++|++..++..+++++++++....      .+.+++++.++++||.
T Consensus       855 ~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~------~~~~~l~~~l~~~Lp~  928 (1304)
T 2vsq_A          855 EYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ------LSAEDVKAHLKKQLPA  928 (1304)
T ss_dssp             EEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS------SCHHHHHHHHHHHSCG
T ss_pred             EEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC------CCHHHHHHHHHHhChH
Confidence            9999999999999999999999999999999999999999888778899999987653      5779999999999999


Q ss_pred             CCCCceEEEccCCCCCCCCcccHHHHHHH
Q 048729          297 YMVPRKVVFSEELPKTSTGKIQKYLLREF  325 (330)
Q Consensus       297 ~~~p~~~~~v~~lP~t~~GKv~r~~l~~~  325 (330)
                      |++|..|+++++||+|+|||+||++|.+.
T Consensus       929 ymvP~~~~~l~~lP~t~~GKidR~~L~~~  957 (1304)
T 2vsq_A          929 YMVPQTFTFLDELPLTTNGKVNKRLLPKP  957 (1304)
T ss_dssp             GGSCSEEEEESCCCCCSSCSSCCSCCCCC
T ss_pred             hhhccEEEEecccCCCCCcccCHhhcCCc
Confidence            99999999999999999999999988654

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=3.1e-48  Score=371.22  Aligned_cols=311  Identities=18%  Similarity=0.248  Sum_probs=252.9

Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEeC----CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729           12 STPLTTLGFLERAAAAYTDCPSLVYN----NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPM   87 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~p~~~a~~~~----~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~   87 (330)
                      ....|+.++|.+.++.+||++|+++.    ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus         8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   87 (590)
T 3kxw_A            8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY   87 (590)
T ss_dssp             HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence            35679999999999999999999873    58899999999999999999999999999999999999999999999999


Q ss_pred             cCcEEeecCCCCC---HHHHHHHHHhcCCcEEEEcccchHHHHHHh-c----------------------cC------c-
Q 048729           88 SGAILNNINTRLD---AHTLSVLLQHSESKLVFVDHLHTYLLLEAL-S----------------------LF------P-  134 (330)
Q Consensus        88 ~G~~~~~l~~~~~---~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-~----------------------~~------~-  134 (330)
                      +|++++|+++.+.   .+++.++++..++++++++......+.... .                      ..      + 
T Consensus        88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (590)
T 3kxw_A           88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALESIELNRSSSWQPTSIKSN  167 (590)
T ss_dssp             TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGGCCGGGGGGCCCCCCCTT
T ss_pred             hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechhccccccccCCCCCCCCC
Confidence            9999999999884   578999999999999998765544332110 0                      00      0 


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       168 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~  247 (590)
T 3kxw_A          168 DIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQ  247 (590)
T ss_dssp             SEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHH
T ss_pred             CeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHH
Confidence                                                                                            


Q ss_pred             ------------------------------------------------------------hHHHHhhccC------Cccc
Q 048729          135 ------------------------------------------------------------QRARLKARQG------VKTV  148 (330)
Q Consensus       135 ------------------------------------------------------------~~~~~~~~~G------~~~~  148 (330)
                                                                                  .........|      .+.|
T Consensus       248 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~Y  327 (590)
T 3kxw_A          248 NPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCY  327 (590)
T ss_dssp             CTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEE
T ss_pred             CHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccc
Confidence                                                                        0001111111      1236


Q ss_pred             Ccee---------------------------------------------------EEEeCCCCCcccCCCCceecEEEEe
Q 048729          149 GLAE---------------------------------------------------VDVVNPETGESVKRDGVSLGEVVLR  177 (330)
Q Consensus       149 g~te---------------------------------------------------~~i~d~~~g~~~~~~~~~~Gel~v~  177 (330)
                      |.||                                                   ++|+|++++.+++.+  +.|||+++
T Consensus       328 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~v~i~d~~~~~~~~~g--~~GEl~v~  405 (590)
T 3kxw_A          328 GLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFD--QVGEIWVQ  405 (590)
T ss_dssp             ECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSEEEEECTTTCCBCCTT--BCEEEEEE
T ss_pred             ccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCCeEEEcCCCCcCCCCC--CEEEEEEe
Confidence            6655                                                   355666558888888  88999999


Q ss_pred             cCcccccccCCchhhhccccC------CC--eEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHH-hcCcCc
Q 048729          178 GGCVTVGYFKDKEATRRCISD------NG--WFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVL-YSITAV  248 (330)
Q Consensus       178 ~~~~~~gy~~~~~~~~~~~~~------~g--~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l-~~~~~v  248 (330)
                      |++++.|||++|+.+.+.|..      +|  ||+|||+|++| +|.++|+||.||+||++|++|+|.+||+.| ..+|+|
T Consensus       406 g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v  484 (590)
T 3kxw_A          406 SNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHH  484 (590)
T ss_dssp             STTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGG
T ss_pred             CCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccc
Confidence            999999999999999988853      24  99999999999 999999999999999999999999999999 789999


Q ss_pred             c--eEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCC-CCCCc-eEEEc--cCCCCCCCCcccHHHH
Q 048729          249 N--EAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPR-YMVPR-KVVFS--EELPKTSTGKIQKYLL  322 (330)
Q Consensus       249 ~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~p~-~~~~v--~~lP~t~~GKv~r~~l  322 (330)
                      .  +++|++.+++. ++.+++++++.++...  ..+.+++.+.++++++. +.+|. .+.++  ++||+|++||++|++|
T Consensus       485 ~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L  561 (590)
T 3kxw_A          485 VLGKCAAFVIQEEH-EYKLTVMCEVKNRFMD--DVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFC  561 (590)
T ss_dssp             GEEEEEEEEEEETT-EEEEEEEEEESCTTCC--HHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHH
T ss_pred             cCccEEEEEecCCC-CceEEEEEEecccccc--chhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHH
Confidence            8  79999888765 6778888888776310  03567888888888875 67775 45544  7999999999999999


Q ss_pred             HHHhhh
Q 048729          323 REFAKS  328 (330)
Q Consensus       323 ~~~~~~  328 (330)
                      ++++.+
T Consensus       562 ~~~~~~  567 (590)
T 3kxw_A          562 RKHLLD  567 (590)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            999865

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=2.1e-35  Score=265.04  Aligned_cols=288  Identities=14%  Similarity=0.106  Sum_probs=211.1

Q ss_pred             HhcCCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeec
Q 048729           26 AAYTDCPSLV-YNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNI   95 (330)
Q Consensus        26 ~~~p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l   95 (330)
                      +.+.|.+|++ +++        -.+|++.+...+..++.   ..+++++|+++.++|.++.+ +..++..+..|+..+..
T Consensus        33 ~w~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~  109 (358)
T 4gs5_A           33 KWLGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVT  109 (358)
T ss_dssp             HHHHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred             ccCCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEec
Confidence            3345666665 322        23999988776665554   45899999999999987654 34456666777777666


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhccCc-----------------hHHHHhhccCCc---ccCceeEEE
Q 048729           96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP-----------------QRARLKARQGVK---TVGLAEVDV  155 (330)
Q Consensus        96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~G~~---~~g~te~~i  155 (330)
                      ++...   ....+++.+++.+...|.++..+........                 ...+.....|.+   .||.||+..
T Consensus       110 ~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~  186 (358)
T 4gs5_A          110 EPTAN---PLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVS  186 (358)
T ss_dssp             CCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSS
T ss_pred             Ccccc---HHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheecccccCceEEeccccccccc
Confidence            65433   2456889999999999988877654322111                 222222334544   599988432


Q ss_pred             eCCCCCcccCCCCceecEEEEecCcccccccCCchhhhc-cccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecC
Q 048729          156 VNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRR-CISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENIC  234 (330)
Q Consensus       156 ~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~-~~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~  234 (330)
                      .-  ...+++..  +.|++.+.+|++..+|.++++...+ .+..+|||+|||+|++|++| ++++||.||+||++|++|+
T Consensus       187 ~~--~~~~~~~~--~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~  261 (358)
T 4gs5_A          187 HV--ALKALNGP--EASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIV  261 (358)
T ss_dssp             EE--EEEECSST--TCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEE
T ss_pred             ee--eccccccc--ccceeeccCCCeEEEecCcCceEEecccccCcceecCCccccccCc-eEEcccccCeEEECCEEEC
Confidence            10  11223333  5588888888888888877664433 33458999999999999888 7778999999999999999


Q ss_pred             HHHHHHHH---hcCcCcceEEEE-eecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCC
Q 048729          235 SAEVESVL---YSITAVNEAAVV-ARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELP  310 (330)
Q Consensus       235 ~~~iE~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP  310 (330)
                      |.+||+.|   ..||+|.+++|+ +.+++..++.++++++.....     ...+++++.++++|+.|++|+.|+++++||
T Consensus       262 p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~-----~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP  336 (358)
T 4gs5_A          262 LDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE-----ALTERLTAEIRSRVSTYENPKHIYFAKAFA  336 (358)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH-----HHHHHHHHHHHHHSCGGGSCSCEEEESSCC
T ss_pred             HHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCC-----cCHHHHHHHHHhhCCCCCCceEEEEECCcC
Confidence            99999877   458999998876 566777788888888765543     456899999999999999999999999999


Q ss_pred             CCCCCcccHHHHHHHhhhc
Q 048729          311 KTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       311 ~t~~GKv~r~~l~~~~~~~  329 (330)
                      +|++||++|++|++++.+-
T Consensus       337 ~t~~GKi~R~~L~~~l~e~  355 (358)
T 4gs5_A          337 KTQTDKIDKRATFQKLSDS  355 (358)
T ss_dssp             BCTTSCBCHHHHHHHTC--
T ss_pred             CCCCCChhHHHHHHHhhhh
Confidence            9999999999999998763

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=8.8e-32  Score=248.10  Aligned_cols=262  Identities=21%  Similarity=0.232  Sum_probs=200.8

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV--PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~--~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|++.+...+..+++.+...++.++|+++.+.|.+  ...+..+++++..|+.+++.+. ..++.+...+++.++++++.
T Consensus       106 ~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~  184 (436)
T 3qov_A          106 HSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTALHA  184 (436)
T ss_dssp             EEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEEEC
T ss_pred             ECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEEEE
Confidence            89999998888888888888999999999999864  3445567888999999887664 47789999999999999999


Q ss_pred             cccchHHHHHHhcc------Cc---------------hHHHHhhccCC---cccCce-----------------------
Q 048729          119 DHLHTYLLLEALSL------FP---------------QRARLKARQGV---KTVGLA-----------------------  151 (330)
Q Consensus       119 ~~~~~~~~~~~~~~------~~---------------~~~~~~~~~G~---~~~g~t-----------------------  151 (330)
                      .|.++..+......      ..               ....+....|.   +.||.|                       
T Consensus       185 ~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~g~~~~~~~  264 (436)
T 3qov_A          185 IPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQEQNGMHFWEDC  264 (436)
T ss_dssp             CHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTTCSSEEECTTT
T ss_pred             CHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCCCCeeEEccCc
Confidence            99988777654211      11               11111111121   123333                       


Q ss_pred             -eEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecCc------e---EEEEec
Q 048729          152 -EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADG------Y---VEIKDR  221 (330)
Q Consensus       152 -e~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G------~---l~~~GR  221 (330)
                       +++|+|+++|++++.+  +.|||+++|..            ...+. ++||+|||+|+++++|      .   +++.||
T Consensus       265 ~~v~i~d~~~g~~~~~g--~~Gel~v~~~~------------~~~~~-~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR  329 (436)
T 3qov_A          265 YLVEIIDPETGEPVPEG--EIGELVLTTLD------------REMMP-LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGR  329 (436)
T ss_dssp             EEEEEECTTTCSBCSTT--CCEEEEEEESS------------CCSSC-CCSEEEEEEECEECSCCTTCCCSCEECCCCCB
T ss_pred             eEEEEEECCCCCCCCCC--CceEEEEeccC------------cCCce-EEEEEcCCEEEEcCCCCCCCCCccccCcccCc
Confidence             5677886689999988  88999999832            22232 7899999999999998      5   699999


Q ss_pred             CCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC-CCC
Q 048729          222 SKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY-MVP  300 (330)
Q Consensus       222 ~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p  300 (330)
                      .||+||++|++|+|.+||++|.++|+|.++++++..++..++.+.++|++. +...+...+.+++.+.++++|+.+ .+|
T Consensus       330 ~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p  408 (436)
T 3qov_A          330 SDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVT  408 (436)
T ss_dssp             SSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999999999999999998877778999999988 543110012678999999999888 899


Q ss_pred             ceEEEcc--CCCCCCCCcccHH
Q 048729          301 RKVVFSE--ELPKTSTGKIQKY  320 (330)
Q Consensus       301 ~~~~~v~--~lP~t~~GKv~r~  320 (330)
                      ..+.+++  +||+|+ ||++|.
T Consensus       409 ~~i~~v~~~~lP~t~-GKi~R~  429 (436)
T 3qov_A          409 PKVKLVKKGSLPQSE-GKAVRV  429 (436)
T ss_dssp             CEEEEECTTCCC--------CE
T ss_pred             eEEEEeCCCcccCcC-CcceEE
Confidence            9999999  999999 999985

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.98  E-value=1.2e-31  Score=250.09  Aligned_cols=120  Identities=21%  Similarity=0.267  Sum_probs=104.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCcEEEeCC---------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Q 048729            7 PNSANSTPLTTLGFLERAAAAYTDCPSLVYNN---------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS   77 (330)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~---------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~   77 (330)
                      ++.-+++..|+.++|.++++++||++|+++.+         +++||+||.++++++|++|.+.|+ +||+|+++++|+++
T Consensus        16 ~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e   94 (480)
T 3t5a_A           16 PRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE   94 (480)
T ss_dssp             --------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH
T ss_pred             cccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH
Confidence            34455677899999999999999999999854         889999999999999999999996 99999999999999


Q ss_pred             HHHHHHHhhhcCcEEeecCC---CCCHHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729           78 MYELQFGVPMSGAILNNINT---RLDAHTLSVLLQHSESKLVFVDHLHTYLLL  127 (330)
Q Consensus        78 ~~~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~  127 (330)
                      +++++|||+++|++++|+++   .++.+++.++++..++++++++......+.
T Consensus        95 ~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~  147 (480)
T 3t5a_A           95 YVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV  147 (480)
T ss_dssp             HHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred             HHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence            99999999999999999998   778899999999999999999887665443

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.98  E-value=2.5e-31  Score=245.63  Aligned_cols=266  Identities=18%  Similarity=0.251  Sum_probs=204.2

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV--PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~--~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|.+.+...+..+++.+...|+.++|+++.+.|.+  ...+...++++..|+.+++++. .+++.+...+++.++++++.
T Consensus       112 ~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~  190 (443)
T 2y4o_A          112 YTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKIILV  190 (443)
T ss_dssp             ECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEEEE
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEEEE
Confidence            89999988888888877788999999999999974  3345566888899999887765 47889999999999999999


Q ss_pred             cccchHHHHHHhc---------cCc------------hHHHHhhccCC---cccCc------------------------
Q 048729          119 DHLHTYLLLEALS---------LFP------------QRARLKARQGV---KTVGL------------------------  150 (330)
Q Consensus       119 ~~~~~~~~~~~~~---------~~~------------~~~~~~~~~G~---~~~g~------------------------  150 (330)
                      .|.++..+.....         .+.            ....+....|.   ..||+                        
T Consensus       191 ~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~  270 (443)
T 2y4o_A          191 TPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETKDGPVIWED  270 (443)
T ss_dssp             CHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTCCSEEECTT
T ss_pred             CHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCCCceEEccC
Confidence            9988877654321         110            00111000111   11222                        


Q ss_pred             -eeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEecC-ceE-----EEEecCC
Q 048729          151 -AEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHAD-GYV-----EIKDRSK  223 (330)
Q Consensus       151 -te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~-G~l-----~~~GR~d  223 (330)
                       ++++|+|+++|++++.+  +.|||+++|..            ...+. ++||+|||+|+++++ |++     +++||.|
T Consensus       271 ~~~~~i~d~~~g~~~~~G--~~Gel~v~~~t------------~~~~p-~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~  335 (443)
T 2y4o_A          271 HFYPEIIDPVTGEVLPDG--SQGELVFTSLT------------KEAMP-VIRYRTRDLTALLPPTARAMRRLAKITGRSD  335 (443)
T ss_dssp             TEEEEEECTTTCCBCCTT--CCEEEEEEESS------------CSSSC-CSSEEEEEEECEECCSSSSSCEECCCCEESS
T ss_pred             CeEEEEEcCCCCCCCCCC--CceEEEEeCCC------------cccCh-hheeecCCEEEEcCCCCCCccccCccccccC
Confidence             26677786578999988  88999999831            22232 789999999999999 987     8999999


Q ss_pred             CeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecC--CcccCCCCCHHHHHHHHHhcCCCC-CCC
Q 048729          224 DVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKR--DLELTKKPTEKEIIEYCRARLPRY-MVP  300 (330)
Q Consensus       224 d~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~l~~~l~~~l~~~-~~p  300 (330)
                      |+||++|++|+|.+||++|.++|+|.++++++..++..++.+.++|++.+  +... ...+.+++.+.|+++|+.+ .+|
T Consensus       336 d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~p  414 (443)
T 2y4o_A          336 DMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASV-TDGERAALARELQHRIKTMVGVS  414 (443)
T ss_dssp             CCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTC-CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccc-hhhHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999999998876655678889998875  2110 0034578999999999876 488


Q ss_pred             ceEEEc--cCCCCCCCCcccHHHHH
Q 048729          301 RKVVFS--EELPKTSTGKIQKYLLR  323 (330)
Q Consensus       301 ~~~~~v--~~lP~t~~GKv~r~~l~  323 (330)
                      ..+.++  ++||+|++||++|...+
T Consensus       415 ~~v~~v~~~~lP~t~~GKi~r~~~~  439 (443)
T 2y4o_A          415 SGVTVLAAGGIPATATGKARRVIDR  439 (443)
T ss_dssp             CEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred             eEEEEeCCCcccCccCCcceEEEec
Confidence            888877  59999999999996543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.97  E-value=3e-30  Score=237.96  Aligned_cols=263  Identities=17%  Similarity=0.220  Sum_probs=202.9

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV--PSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~--~~~~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|++.+...+..+++.+...|+.++|+++.+.|.+  ...+...++++..|+.+++++. .+++.+...+++.++++++.
T Consensus       110 ~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~  188 (437)
T 2y27_A          110 YTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIMV  188 (437)
T ss_dssp             ECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEEE
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEEE
Confidence            89999988888888877788999999999999963  3334556888899999987665 47899999999999999999


Q ss_pred             cccchHHHHHHhc---------cCc------------hHHHHhhccCC---cccCce-----------------------
Q 048729          119 DHLHTYLLLEALS---------LFP------------QRARLKARQGV---KTVGLA-----------------------  151 (330)
Q Consensus       119 ~~~~~~~~~~~~~---------~~~------------~~~~~~~~~G~---~~~g~t-----------------------  151 (330)
                      .|.++..+.....         .+.            ....+....|.   ..||+|                       
T Consensus       189 ~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~  268 (437)
T 2y27_A          189 TPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETKDGPTIWED  268 (437)
T ss_dssp             CHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTCSSCEECTT
T ss_pred             CHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCCCceeEccC
Confidence            9998877654321         110            00111111111   112222                       


Q ss_pred             --eEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEec-CceE-----EEEecCC
Q 048729          152 --EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHA-DGYV-----EIKDRSK  223 (330)
Q Consensus       152 --e~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~-~G~l-----~~~GR~d  223 (330)
                        +++|+|+++|++++.+  +.|||+++|.            +...+. ++||+|||+|++|+ +|++     ++.||.|
T Consensus       269 ~~~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t~~~~~-~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~  333 (437)
T 2y27_A          269 HFYPEIIDPETGEVLPDG--ELGELVFTSL------------TKEALP-IIRYRTRDLTRLLPGTARTMRRMEKITGRSD  333 (437)
T ss_dssp             TEEEEEECTTTCCBCCTT--CCEEEEEEES------------SCSSSC-CCSEEEEEEECEECCSSSSSCEECCCCEEGG
T ss_pred             ceEEEEEcCCCCCCCCCC--CccEEEEecC------------CcCCch-hheeecCCEEEEeCCCCCCccccCccccccC
Confidence              5667776578899888  8899999983            122332 78999999999999 6985     9999999


Q ss_pred             CeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC-CCCce
Q 048729          224 DVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY-MVPRK  302 (330)
Q Consensus       224 d~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~  302 (330)
                      |+||++|++|+|.+||++|.++|+|.++++++..++..++.+.++|++.++... ...+.+++.+.++++|+.+ .+|..
T Consensus       334 d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~p~~  412 (437)
T 2y27_A          334 DMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAP-DTAAIQVAKQALAYDIKSLIGVTAV  412 (437)
T ss_dssp             GCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTT-CHHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred             CeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccc-hhhhHHHHHHHHHHHHHHhcCCceE
Confidence            999999999999999999999999999998888766667789999988765320 0023478899999999888 58988


Q ss_pred             EEEc--cCCCCCCCCcccHHH
Q 048729          303 VVFS--EELPKTSTGKIQKYL  321 (330)
Q Consensus       303 ~~~v--~~lP~t~~GKv~r~~  321 (330)
                      +.++  ++||+|+ ||++|..
T Consensus       413 v~~v~~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          413 INVLPVNGIERSV-GKARRVV  432 (437)
T ss_dssp             EEECCTTCSCCCS-SSCCCEE
T ss_pred             EEEeCCCCccCCC-CcceEEE
Confidence            8888  5999999 9999864

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.64  E-value=1.3e-16  Score=117.59  Aligned_cols=98  Identities=18%  Similarity=0.226  Sum_probs=72.0

Q ss_pred             ecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCC-C
Q 048729          220 DRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRY-M  298 (330)
Q Consensus       220 GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~  298 (330)
                      .|.||+||++|.||+|.+||++|.+||+|.++++++..++.+++.+.++++..++..... ...+++.+.+++++..+ .
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~-~~~~~l~~~i~~~l~~~~g   79 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDY-GRLQALTREITRQLKDEIL   79 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCH-HHHHHHHHHHHHHHHHHHS
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccccc-chhhhhHHHHHHHHHHHhC
Confidence            499999999999999999999999999999999999998888889999999887654110 12234444454444322 2


Q ss_pred             CCceEEEc--cCCCCCCCCcccH
Q 048729          299 VPRKVVFS--EELPKTSTGKIQK  319 (330)
Q Consensus       299 ~p~~~~~v--~~lP~t~~GKv~r  319 (330)
                      +|..+.++  ++||+| +||++|
T Consensus        80 v~~~v~~v~~~~lPrt-sGKi~R  101 (109)
T 3lax_A           80 VTPRVKLVPKGALPKS-EGKAVR  101 (109)
T ss_dssp             SCCEEEEECTTCSCCC----CCC
T ss_pred             CccceEEEcCCeecCC-CCCcch
Confidence            44455555  489999 799987

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.03  E-value=8.9e-10  Score=98.71  Aligned_cols=172  Identities=12%  Similarity=-0.021  Sum_probs=110.5

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC-CHH-HHHHHHHhhhcCcEEeecCCCCCHH----------------
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPN-VPS-MYELQFGVPMSGAILNNINTRLDAH----------------  102 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~-~~~-~~~~~la~~~~G~~~~~l~~~~~~~----------------  102 (330)
                      +|.+.+...+...++.+...|+.++|+++.+.|. .+. -+...++++..|+.+++  ..+++.                
T Consensus       111 ~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~--~~~dp~~~~~~~~~~~~~~~~~  188 (369)
T 3hgu_A          111 AYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS--IDIDPRWVKRSLSEGDTATVRK  188 (369)
T ss_dssp             ECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC--CCCCHHHHHHHHHTTCHHHHHH
T ss_pred             ECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC--ccCChHHHHHhhcccchhhhHH
Confidence            8999988888777777777899999999999998 332 23444555888995544  334555                


Q ss_pred             -------HHHHHHHhcCCcEEEEcccchHHHHHHhc-------cCc---------------hHH--HH------------
Q 048729          103 -------TLSVLLQHSESKLVFVDHLHTYLLLEALS-------LFP---------------QRA--RL------------  139 (330)
Q Consensus       103 -------~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-------~~~---------------~~~--~~------------  139 (330)
                             .+...+++.++++++..|.++..+.+...       .+.               ...  .+            
T Consensus       189 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~T  268 (369)
T 3hgu_A          189 YTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGST  268 (369)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEG
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCch
Confidence                   77779999999999999987766533211       000               001  00            


Q ss_pred             ---------hh-ccCCc------ccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEE
Q 048729          140 ---------KA-RQGVK------TVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFY  203 (330)
Q Consensus       140 ---------~~-~~G~~------~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~  203 (330)
                               .. +.|.+      +++. +++|+|+++|++++.+  +.|||++++.....            +  --+|+
T Consensus       269 E~~~~~~~~~~~~~G~~~~~~~~~~~~-~v~ivD~~~g~~vp~G--~~GEl~vt~l~~~~------------~--l~ry~  331 (369)
T 3hgu_A          269 SALGVSRSLLITSESQQVIYDSFSPFI-TYDVVDSITAQTVEYG--ERGNVIVTHLSPWA------------F--YPRVA  331 (369)
T ss_dssp             GGTEEEEECCBCTTCSSCEEECCTTTE-EEEEECTTTCSBCCTT--CEEEEEEEEEETTE------------E--EEEEE
T ss_pred             hhhcceeccccccCCCcccccCCCCCe-EEEEECCCCCcCCCCC--CceEEEEEEcCccc------------c--ccccc
Confidence                     11 25667      6774 8899998789999998  89999998732110            1  12589


Q ss_pred             eCceEEEecC---------ceEEEEecCCCeEEeCCe
Q 048729          204 TGDIGVMHAD---------GYVEIKDRSKDVIISGGE  231 (330)
Q Consensus       204 TGD~~~~~~~---------G~l~~~GR~dd~ik~~G~  231 (330)
                      |||++.+.+.         ..+..++|.++..|+.|.
T Consensus       332 tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          332 ERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             EEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred             CCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence            9999987543         246778888988888874

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=97.27  E-value=0.00037  Score=65.36  Aligned_cols=58  Identities=16%  Similarity=0.196  Sum_probs=48.7

Q ss_pred             eecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEec----CceEEEEecCCCeEEeCCeecCHHHHHHHHhc
Q 048729          170 SLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHA----DGYVEIKDRSKDVIISGGENICSAEVESVLYS  244 (330)
Q Consensus       170 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~----~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~  244 (330)
                      +.+||+++...   |.|              .|++||+++++.    ...+.|+||.++++.+.|++++..+||+++.+
T Consensus       397 ~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~  458 (609)
T 4b2g_A          397 KEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN  458 (609)
T ss_dssp             CEEEEEEECTT---SCC--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred             CeEEEehhhhh---hhh--------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence            66888887642   333              299999999874    47899999999999999999999999999874

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=96.92  E-value=0.0032  Score=58.83  Aligned_cols=43  Identities=9%  Similarity=0.048  Sum_probs=39.3

Q ss_pred             EEeCceEEEecC----ceEEEEecCCCeEEeCCeecCHHHHHHHHhc
Q 048729          202 FYTGDIGVMHAD----GYVEIKDRSKDVIISGGENICSAEVESVLYS  244 (330)
Q Consensus       202 ~~TGD~~~~~~~----G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~  244 (330)
                      |++||++++..-    ..+.|+||.++++.+.|++++..+||+++.+
T Consensus       407 Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~  453 (581)
T 4epl_A          407 YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVES  453 (581)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred             EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence            999999998752    6799999999999999999999999999875

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=96.88  E-value=0.0012  Score=61.88  Aligned_cols=45  Identities=11%  Similarity=0.147  Sum_probs=40.6

Q ss_pred             EEeCceEEEec----CceEEEEecCCCeEEeCCeecCHHHHHHHHhcCc
Q 048729          202 FYTGDIGVMHA----DGYVEIKDRSKDVIISGGENICSAEVESVLYSIT  246 (330)
Q Consensus       202 ~~TGD~~~~~~----~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~  246 (330)
                      |++||++++..    ...+.|.||.++++.+.|++++..+||+++.+..
T Consensus       400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~  448 (581)
T 4eql_A          400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAK  448 (581)
T ss_dssp             EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred             EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHH
Confidence            99999999976    4689999999999999999999999999998643

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.19  E-value=0.046  Score=50.38  Aligned_cols=96  Identities=10%  Similarity=0.160  Sum_probs=72.5

Q ss_pred             cCCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCC
Q 048729           28 YTDCPSLV-YNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINT   97 (330)
Q Consensus        28 ~p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~   97 (330)
                      .|+.+|++ +++        -.+|++.+...+.....   ..++.++|+++.++|.++.+ +..++.++..|+..+..+ 
T Consensus       161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-  236 (501)
T 3ipl_A          161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-  236 (501)
T ss_dssp             CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred             CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence            35667665 332        23899888766655544   45899999999999987554 445678888999987665 


Q ss_pred             CCCHHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729           98 RLDAHTLSVLLQHSESKLVFVDHLHTYLLL  127 (330)
Q Consensus        98 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~  127 (330)
                      .++++.+...+++.+++.++..|..+..+.
T Consensus       237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  266 (501)
T 3ipl_A          237 KFNAEQILTMIKNERITHISLVPQTLNWLM  266 (501)
T ss_dssp             SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCcEEEchHHHHHHHH
Confidence            578999999999999999999887666554

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=95.96  E-value=0.076  Score=49.48  Aligned_cols=97  Identities=7%  Similarity=-0.001  Sum_probs=73.3

Q ss_pred             cCCCcEEE-eCCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH---HHHHhhhcCcEEeec
Q 048729           28 YTDCPSLV-YNNT--------TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYE---LQFGVPMSGAILNNI   95 (330)
Q Consensus        28 ~p~~~a~~-~~~~--------~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~---~~la~~~~G~~~~~l   95 (330)
                      .|+.+|++ ++++        .+|++.+...+.....   ..++.++|+++..+|.++.+-.   .+++++..|+..+..
T Consensus       180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  256 (539)
T 1mdb_A          180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS  256 (539)
T ss_dssp             CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence            45666655 4332        3899988766655544   3488999999999998755432   478888999998765


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH
Q 048729           96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE  128 (330)
Q Consensus        96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~  128 (330)
                      + ..+++.+...+++.++++++..|..+..+..
T Consensus       257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  288 (539)
T 1mdb_A          257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWMD  288 (539)
T ss_dssp             S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHh
Confidence            5 4788999999999999999999988776543

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=95.27  E-value=0.14  Score=47.67  Aligned_cols=95  Identities=11%  Similarity=0.084  Sum_probs=72.5

Q ss_pred             CCCcEEE-eCCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH---HHHHhhhcCcEEeecC
Q 048729           29 TDCPSLV-YNNT--------TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYE---LQFGVPMSGAILNNIN   96 (330)
Q Consensus        29 p~~~a~~-~~~~--------~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~---~~la~~~~G~~~~~l~   96 (330)
                      ++.+|++ ++++        .+|++.+...+...+..   .++.++|+++.++|.++.+-.   .+++.+..|+.++..+
T Consensus       190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~  266 (544)
T 3o83_A          190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP  266 (544)
T ss_dssp             TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred             ccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence            5666665 4332        38999887776665544   589999999999997755432   4688889999887665


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729           97 TRLDAHTLSVLLQHSESKLVFVDHLHTYLLL  127 (330)
Q Consensus        97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~  127 (330)
                       ...+..+...+++.+++.+...|..+..+.
T Consensus       267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  296 (544)
T 3o83_A          267 -NPEPLNCFSIIQRHQVNMASLVPSAVIMWL  296 (544)
T ss_dssp             -SCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHCCCEEEechHHHHHHH
Confidence             468889999999999999999998776654

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=95.24  E-value=0.059  Score=50.37  Aligned_cols=95  Identities=15%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             CCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCC
Q 048729           30 DCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTR   98 (330)
Q Consensus        30 ~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~   98 (330)
                      +.+|++. ++        -.+|++.+...+......+...++.++|+++.++|.++.+  ...+++++ .|+..+..+ .
T Consensus       192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~  269 (548)
T 2d1s_A          192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K  269 (548)
T ss_dssp             TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred             CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence            6666664 32        2389988876665554433336889999999999987554  33456777 999887665 5


Q ss_pred             CCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729           99 LDAHTLSVLLQHSESKLVFVDHLHTYLL  126 (330)
Q Consensus        99 ~~~~~l~~~l~~~~~~~i~~~~~~~~~~  126 (330)
                      ++++.+...+++.++++++..|.++..+
T Consensus       270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l  297 (548)
T 2d1s_A          270 FDEETFLKTLQDYKCTSVILVPTLFAIL  297 (548)
T ss_dssp             CCHHHHHHHHHHTTEEEEEECHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence            7889999999999999998877655443

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=95.13  E-value=0.069  Score=49.88  Aligned_cols=84  Identities=11%  Similarity=0.041  Sum_probs=64.0

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|++.+...+......+...++.++|+++.++|.++.+ +...++.+..|+..+..+ ...++.+...+++.+++.++..
T Consensus       210 ~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~  288 (550)
T 3rix_A          210 LPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLV  288 (550)
T ss_dssp             EEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEEC
T ss_pred             hhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeC
Confidence            88888876655544433335788999999999988654 445677888999887665 5788999999999999999987


Q ss_pred             ccchHH
Q 048729          120 HLHTYL  125 (330)
Q Consensus       120 ~~~~~~  125 (330)
                      |.++..
T Consensus       289 P~~~~~  294 (550)
T 3rix_A          289 PTLFSF  294 (550)
T ss_dssp             HHHHHH
T ss_pred             cHHHHH
Confidence            765543

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=94.86  E-value=0.25  Score=45.66  Aligned_cols=81  Identities=14%  Similarity=0.099  Sum_probs=62.1

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH--HHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY--ELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~--~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|++.+...+..++..   .++.++|+++..+|.++.+.  ..+++++ .|+..+..+ .+.+..+...+.+.+++++..
T Consensus       190 ~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~  264 (517)
T 3r44_A          190 HTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP-QFDATKVWSLIVEERVCIGGA  264 (517)
T ss_dssp             EEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS-SCCHHHHHHHHHHTTCCEEEE
T ss_pred             eeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC-CCCHHHHHHHHHHhCCeEEEe
Confidence            8999887766665544   58999999999999886543  3345555 888887665 578899999999999999988


Q ss_pred             cccchHHH
Q 048729          119 DHLHTYLL  126 (330)
Q Consensus       119 ~~~~~~~~  126 (330)
                      .|..+..+
T Consensus       265 ~P~~~~~l  272 (517)
T 3r44_A          265 VPAILNFM  272 (517)
T ss_dssp             CHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87665544

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=94.68  E-value=0.078  Score=48.99  Aligned_cols=80  Identities=15%  Similarity=0.084  Sum_probs=62.2

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCC--CCHHHHHHHHHhcCCcEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTR--LDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~--~~~~~l~~~l~~~~~~~i~  117 (330)
                      +|++.+...+.....   ..++.++|+++.++|.++.+ +..+++.+..|+..+.++..  ..+..+...+++.++++++
T Consensus       164 ~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~  240 (512)
T 3fce_A          164 ITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWT  240 (512)
T ss_dssp             EEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEE
T ss_pred             EehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEE
Confidence            899888766555443   46899999999999987654 44578888999998877653  5678899999999999988


Q ss_pred             Ecccch
Q 048729          118 VDHLHT  123 (330)
Q Consensus       118 ~~~~~~  123 (330)
                      ..|.++
T Consensus       241 ~~P~~~  246 (512)
T 3fce_A          241 STPSFA  246 (512)
T ss_dssp             ECHHHH
T ss_pred             ecHHHH
Confidence            776544

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=94.65  E-value=0.085  Score=48.77  Aligned_cols=81  Identities=11%  Similarity=0.017  Sum_probs=62.5

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCC--CCHHHHHHHHHhcCCcEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTR--LDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~--~~~~~l~~~l~~~~~~~i~  117 (330)
                      +|++.+...+..+..   ..++.++|+++.+.|.++.+ +..+++++..|+..+..+..  ..+..+...+++.++++++
T Consensus       163 ~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~  239 (511)
T 3e7w_A          163 ISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWT  239 (511)
T ss_dssp             EEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEE
T ss_pred             EcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEE
Confidence            898888766655443   46889999999999988655 44578889999988776642  5678889999999999988


Q ss_pred             EcccchH
Q 048729          118 VDHLHTY  124 (330)
Q Consensus       118 ~~~~~~~  124 (330)
                      ..|.++.
T Consensus       240 ~~P~~~~  246 (511)
T 3e7w_A          240 STPSFVQ  246 (511)
T ss_dssp             ECHHHHH
T ss_pred             ecHHHHH
Confidence            8775543

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=94.57  E-value=0.14  Score=47.72  Aligned_cols=87  Identities=17%  Similarity=0.155  Sum_probs=65.3

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|++.+...+.... .....++.++|+++..+|..+.+ +...+.++..|+..+..+..++++.+...+++.++++++..
T Consensus       196 ~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~  274 (541)
T 1v25_A          196 YSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGV  274 (541)
T ss_dssp             EEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEEC
T ss_pred             eehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecc
Confidence            88888754433211 11245788999999999987544 33457778889988877767789999999999999999999


Q ss_pred             ccchHHHHH
Q 048729          120 HLHTYLLLE  128 (330)
Q Consensus       120 ~~~~~~~~~  128 (330)
                      |..+..+..
T Consensus       275 P~~~~~l~~  283 (541)
T 1v25_A          275 PTVWLALAD  283 (541)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHh
Confidence            988776643

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=94.56  E-value=0.14  Score=47.09  Aligned_cols=95  Identities=16%  Similarity=0.186  Sum_probs=69.8

Q ss_pred             cCCCcEEE-eCCe--------eecHHHHHHHHHHHHHHHHHcCC--CCCCEEEEECCCCHHHH--HHHHHhhhcCcEEee
Q 048729           28 YTDCPSLV-YNNT--------TYTWSETHRRCLQVASSLSSVGI--QRGHVVSVVAPNVPSMY--ELQFGVPMSGAILNN   94 (330)
Q Consensus        28 ~p~~~a~~-~~~~--------~~T~~el~~~~~~~a~~L~~~g~--~~gd~V~~~~~~~~~~~--~~~la~~~~G~~~~~   94 (330)
                      .|+.+|++ ++++        .+|++.+...+..+..   ..++  .++|+++..+|.++.+-  ..+++.+..|+..+.
T Consensus       151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  227 (504)
T 1t5h_X          151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV  227 (504)
T ss_dssp             CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred             CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence            46677665 4332        3888887766555443   4577  78999999999876553  456888899999886


Q ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729           95 INTRLDAHTLSVLLQHSESKLVFVDHLHTYLL  126 (330)
Q Consensus        95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~  126 (330)
                      .+ .+.+..+...+++.+++.++..|..+..+
T Consensus       228 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  258 (504)
T 1t5h_X          228 VE-EFRPVDALQLVQQEQVTSLFATPTHLDAL  258 (504)
T ss_dssp             CS-SCCHHHHHHHHHHHTCCEEECCHHHHHHH
T ss_pred             CC-CCCHHHHHHHHHHhCCeEEEeChHHHHHH
Confidence            65 47788999999999999999887766544

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=94.50  E-value=0.13  Score=48.37  Aligned_cols=94  Identities=5%  Similarity=-0.037  Sum_probs=68.7

Q ss_pred             cCCCcEEE-eCCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH--HHHHhhhcCcEEeecC
Q 048729           28 YTDCPSLV-YNNT--------TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYE--LQFGVPMSGAILNNIN   96 (330)
Q Consensus        28 ~p~~~a~~-~~~~--------~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~--~~la~~~~G~~~~~l~   96 (330)
                      .|+.+|++ ++++        .+|++.+...+.....   ..++.++|+++.++|.++.+-.  .+++++..|+..+..+
T Consensus       165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~  241 (590)
T 3kxw_A          165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS  241 (590)
T ss_dssp             CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred             CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence            35666665 4332        3899988777666554   4589999999999999876533  3688889999888776


Q ss_pred             CCC---CHHHHHHHHHhcCCcEEEEcccchH
Q 048729           97 TRL---DAHTLSVLLQHSESKLVFVDHLHTY  124 (330)
Q Consensus        97 ~~~---~~~~l~~~l~~~~~~~i~~~~~~~~  124 (330)
                      +..   .+..+...+++.+++++...+..+.
T Consensus       242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~  272 (590)
T 3kxw_A          242 PFSFLQNPLSWLKHITKYKATISGSPNFAYD  272 (590)
T ss_dssp             HHHHHHCTHHHHHHHHHHTCSEEEECTHHHH
T ss_pred             HHHHHHCHHHHHHHHHHhCCeeecCChhHHH
Confidence            432   5678888999999998887765443

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=94.39  E-value=0.26  Score=45.44  Aligned_cols=81  Identities=6%  Similarity=-0.105  Sum_probs=60.1

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFV  118 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~  118 (330)
                      +|.+.+...+..+..   ..++.++|+++.++|.++.+  ...+.+++..|+.+++ . ..++..+...+++.++++++.
T Consensus       180 ~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~i~~~~~t~~~~  254 (509)
T 3ivr_A          180 ISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA-A-KFDPAQAARDIEAHKVTVMAE  254 (509)
T ss_dssp             EEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-S-SCCHHHHHHHHHHHTCCEEEE
T ss_pred             EehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe-c-ccCHHHHHHHHHHHCCcEEEe
Confidence            899888766665554   45899999999999987654  3333445555555544 3 678999999999999999998


Q ss_pred             cccchHHH
Q 048729          119 DHLHTYLL  126 (330)
Q Consensus       119 ~~~~~~~~  126 (330)
                      .|..+..+
T Consensus       255 ~p~~~~~l  262 (509)
T 3ivr_A          255 FAPMLGNI  262 (509)
T ss_dssp             ETTHHHHH
T ss_pred             cHHHHHHH
Confidence            87766544

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=94.10  E-value=0.48  Score=44.86  Aligned_cols=82  Identities=10%  Similarity=0.013  Sum_probs=63.1

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HH-HHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YE-LQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~-~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~  117 (330)
                      +|++.+...+......   .++.++|+++.++|.++.+  .. .+++++..|+..+..+. .++..+...+++.+++++.
T Consensus       204 ~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~  279 (617)
T 3rg2_A          204 RTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNVTA  279 (617)
T ss_dssp             EEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEE
T ss_pred             hhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcEEE
Confidence            8999887766665544   4889999999999976544  32 46888888998876654 5788888899999999999


Q ss_pred             EcccchHHH
Q 048729          118 VDHLHTYLL  126 (330)
Q Consensus       118 ~~~~~~~~~  126 (330)
                      ..|..+..+
T Consensus       280 ~~P~~~~~l  288 (617)
T 3rg2_A          280 LVPPAVSLW  288 (617)
T ss_dssp             ECHHHHHHH
T ss_pred             cchHHHHHH
Confidence            887655443

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=93.60  E-value=0.29  Score=45.60  Aligned_cols=82  Identities=13%  Similarity=0.114  Sum_probs=64.9

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEc
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD  119 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~  119 (330)
                      +|++.+...+..++..   .++.++|+++.++|..+.+ +..++.++..|+..+..+ .++++.+...+++.++++++..
T Consensus       200 ~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~  275 (549)
T 3g7s_A          200 LTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSWAV  275 (549)
T ss_dssp             EEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEEEC
T ss_pred             EcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEEeC
Confidence            8999998777766654   4889999999999987554 334677778899887665 6788999999999999999988


Q ss_pred             ccchHHH
Q 048729          120 HLHTYLL  126 (330)
Q Consensus       120 ~~~~~~~  126 (330)
                      |..+..+
T Consensus       276 P~~~~~l  282 (549)
T 3g7s_A          276 PPALNVL  282 (549)
T ss_dssp             HHHHHHH
T ss_pred             CHHHHHH
Confidence            7655444

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=93.57  E-value=0.15  Score=47.22  Aligned_cols=81  Identities=15%  Similarity=-0.050  Sum_probs=60.2

Q ss_pred             ecHHHH-HHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH--HHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEE
Q 048729           41 YTWSET-HRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY--ELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        41 ~T~~el-~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~--~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~  117 (330)
                      +|++.+ .......   ....++.++|+++.++|.++.+-  ..++..+..|+..+.++...+++.+...+++.++++++
T Consensus       203 ~sh~~l~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~  279 (529)
T 2v7b_A          203 HTHANLYWTAELYA---KPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFY  279 (529)
T ss_dssp             EEHHHHHHHHHHTC---CCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEE
T ss_pred             EEhhHHHHHHHHHh---hhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEE
Confidence            788877 2222111   11358899999999999886653  34577888999988776778899999999999999998


Q ss_pred             EcccchH
Q 048729          118 VDHLHTY  124 (330)
Q Consensus       118 ~~~~~~~  124 (330)
                      ..|..+.
T Consensus       280 ~~P~~~~  286 (529)
T 2v7b_A          280 GVPTLYA  286 (529)
T ss_dssp             ECHHHHH
T ss_pred             ecHHHHH
Confidence            8776544

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=93.24  E-value=0.14  Score=47.69  Aligned_cols=96  Identities=13%  Similarity=0.050  Sum_probs=68.3

Q ss_pred             cCCCcEEE-eC-C-------eeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeec
Q 048729           28 YTDCPSLV-YN-N-------TTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNI   95 (330)
Q Consensus        28 ~p~~~a~~-~~-~-------~~~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l   95 (330)
                      .|+.+|++ ++ |       -.+|++.+...+........ ..++.++|+++.++|....+  ...+++.+..|+..+..
T Consensus       176 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~  255 (536)
T 3ni2_A          176 SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIM  255 (536)
T ss_dssp             CTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEEC
T ss_pred             CccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEc
Confidence            35667665 32 2       23899888766554443322 45788999999999987544  34567888899988766


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcccchH
Q 048729           96 NTRLDAHTLSVLLQHSESKLVFVDHLHTY  124 (330)
Q Consensus        96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~  124 (330)
                      + ...+..+...+++.+++++...|.++.
T Consensus       256 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~  283 (536)
T 3ni2_A          256 P-KFEIGSLLGLIEKYKVSIAPVVPPVMM  283 (536)
T ss_dssp             S-SCCHHHHHHHHHHHTCCEEEECHHHHH
T ss_pred             C-CCCHHHHHHHHHHhCCeEEEccHHHHH
Confidence            5 577889999999999999987765443

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=93.08  E-value=0.42  Score=44.81  Aligned_cols=69  Identities=12%  Similarity=-0.025  Sum_probs=54.3

Q ss_pred             HHcCCCCCCEEEEECCCCHHHH--HHHHHhhhcCcEEeecCC-CCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729           58 SSVGIQRGHVVSVVAPNVPSMY--ELQFGVPMSGAILNNINT-RLDAHTLSVLLQHSESKLVFVDHLHTYLL  126 (330)
Q Consensus        58 ~~~g~~~gd~V~~~~~~~~~~~--~~~la~~~~G~~~~~l~~-~~~~~~l~~~l~~~~~~~i~~~~~~~~~~  126 (330)
                      ...++.++|+++.+.|.++.+-  ..+++.+..|+..+..+. .+.+..+...+++.+++.++..|.++..+
T Consensus       240 ~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  311 (570)
T 3c5e_A          240 GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRML  311 (570)
T ss_dssp             TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHH
T ss_pred             hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHH
Confidence            4568899999999999886553  356788888998877653 77899999999999999998877655443

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=92.52  E-value=0.2  Score=46.89  Aligned_cols=78  Identities=12%  Similarity=0.028  Sum_probs=58.6

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCC--CCHHHHHHHHHhcCCcEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTR--LDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~--~~~~~l~~~l~~~~~~~i~  117 (330)
                      +|++.+...+....   ...++.++|+++.+.|.++.. +..++..+..|+..+.++..  ..+..+...+++.+++++.
T Consensus       202 ~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~  278 (563)
T 1amu_A          202 LEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVIT  278 (563)
T ss_dssp             EESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEE
T ss_pred             EehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEE
Confidence            88888765544333   356899999999999987654 34567788899988766542  5678899999999999888


Q ss_pred             Eccc
Q 048729          118 VDHL  121 (330)
Q Consensus       118 ~~~~  121 (330)
                      ..|.
T Consensus       279 ~~P~  282 (563)
T 1amu_A          279 LPPT  282 (563)
T ss_dssp             ECHH
T ss_pred             eCHH
Confidence            7654

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=92.18  E-value=0.63  Score=42.80  Aligned_cols=94  Identities=13%  Similarity=0.075  Sum_probs=67.5

Q ss_pred             cCCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecC
Q 048729           28 YTDCPSLV-YNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNIN   96 (330)
Q Consensus        28 ~p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~   96 (330)
                      .|+.+|++ +++        -.+|++.+...+..+...+   ++.++|+++..+|....+  +..+++.+..|+.++..+
T Consensus       153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~  229 (505)
T 3nyq_A          153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG  229 (505)
T ss_dssp             CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred             CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence            45666665 332        2389999887777666554   888999999999976443  345688889999887664


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729           97 TRLDAHTLSVLLQHSESKLVFVDHLHTYLL  126 (330)
Q Consensus        97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~  126 (330)
                       .+.+..+...+ +.+++.++..|..+..+
T Consensus       230 -~~~~~~~~~~i-~~~~t~~~~~P~~~~~l  257 (505)
T 3nyq_A          230 -RFSTEGAAREL-NDGATMLFGVPTMYHRI  257 (505)
T ss_dssp             -SCCHHHHHHHH-TTTCCEEEECHHHHHHH
T ss_pred             -CCChHHHHHHH-hhCCeEEEehHHHHHHH
Confidence             56777777777 67889888887665443

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=92.07  E-value=0.38  Score=48.27  Aligned_cols=99  Identities=12%  Similarity=0.072  Sum_probs=73.1

Q ss_pred             cCCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeec
Q 048729           28 YTDCPSLV-YNN--------TTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNI   95 (330)
Q Consensus        28 ~p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l   95 (330)
                      .|+.+|++ +++        -.+|++.+...+........ ..++.++|+++.++|....+  ...++..+..|+..+..
T Consensus       223 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~  302 (979)
T 3tsy_A          223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM  302 (979)
T ss_dssp             CTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEEC
T ss_pred             CccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEe
Confidence            46777766 332        23899888766554433222 45788999999999987544  34567888899988766


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcccchHHHH
Q 048729           96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYLLL  127 (330)
Q Consensus        96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~  127 (330)
                      + ...++.+...+++.+++++...|.++..+.
T Consensus       303 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  333 (979)
T 3tsy_A          303 P-KFEINLLLELIQRCKVTVAPMVPPIVLAIA  333 (979)
T ss_dssp             S-SCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHH
Confidence            5 567899999999999999999998776654

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=92.04  E-value=0.5  Score=45.10  Aligned_cols=84  Identities=10%  Similarity=-0.024  Sum_probs=61.1

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH--HHHHHhhhcCcEEeecCC---CCCHHHHHHHHHhcCCcE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY--ELQFGVPMSGAILNNINT---RLDAHTLSVLLQHSESKL  115 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~--~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~  115 (330)
                      +|.+.+...+.....  ...+++++|+++.++|.+..+.  ..+++.+..|+..+..+.   ..++..+..++++.++++
T Consensus       276 ~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~  353 (652)
T 1pg4_A          276 HTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNI  353 (652)
T ss_dssp             EESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSE
T ss_pred             ECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeE
Confidence            777776543322211  2468899999999999886553  456888999999887764   246788999999999999


Q ss_pred             EEEcccchHHH
Q 048729          116 VFVDHLHTYLL  126 (330)
Q Consensus       116 i~~~~~~~~~~  126 (330)
                      +++.|..+..+
T Consensus       354 ~~~~P~~~~~l  364 (652)
T 1pg4_A          354 LYTAPTAIRAL  364 (652)
T ss_dssp             EEECHHHHHHH
T ss_pred             EEeCHHHHHHH
Confidence            98877655443

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=91.62  E-value=0.45  Score=45.12  Aligned_cols=94  Identities=15%  Similarity=0.115  Sum_probs=67.7

Q ss_pred             cCCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecC-
Q 048729           28 YTDCPSLV-YNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNIN-   96 (330)
Q Consensus        28 ~p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~-   96 (330)
                      .|+.+|++ +++        -.+|++.+...+..    ....++.++|+++.++|.+++. +..++..+..|+..+..+ 
T Consensus       162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~  237 (620)
T 4dg8_A          162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL  237 (620)
T ss_dssp             CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred             CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence            35666665 322        23888877543322    2346889999999999988765 445688888898877654 


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEEcccchHH
Q 048729           97 TRLDAHTLSVLLQHSESKLVFVDHLHTYL  125 (330)
Q Consensus        97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~  125 (330)
                      ...++..+...+++.+++.+...|.++..
T Consensus       238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~  266 (620)
T 4dg8_A          238 GPLDPGVLRQLIGERGADSAWLTASLFNT  266 (620)
T ss_dssp             SSCCHHHHHHHHHTTCCCEEEEEHHHHHH
T ss_pred             ccCCHHHHHHHHHHhCCcEEEccHHHHHH
Confidence            46789999999999999999887765443

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=91.32  E-value=0.64  Score=42.70  Aligned_cols=89  Identities=8%  Similarity=0.072  Sum_probs=60.9

Q ss_pred             CCCcEEE-eCCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCC
Q 048729           29 TDCPSLV-YNNT--------TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINT   97 (330)
Q Consensus        29 p~~~a~~-~~~~--------~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~   97 (330)
                      |+.+|++ ++++        .+|++.+...+..+...   .++.++|+++..+|..+.+  ....+..+..|+..+.++ 
T Consensus       154 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-  229 (503)
T 4fuq_A          154 ADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDY---WRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP-  229 (503)
T ss_dssp             TTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS-
T ss_pred             CCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC-
Confidence            5666655 4332        38999887766665544   5889999999999986543  344566677788776655 


Q ss_pred             CCCHHHHHHHHHhcCCcEEEEcccch
Q 048729           98 RLDAHTLSVLLQHSESKLVFVDHLHT  123 (330)
Q Consensus        98 ~~~~~~l~~~l~~~~~~~i~~~~~~~  123 (330)
                      .++++.+...++  ++++++..|.++
T Consensus       230 ~~~~~~~~~~i~--~~t~~~~~P~~~  253 (503)
T 4fuq_A          230 KFDPDKILDLMA--RATVLMGVPTFY  253 (503)
T ss_dssp             SCCHHHHHHHHT--TCCEEEECHHHH
T ss_pred             CCCHHHHHHHHh--hcCEEEEHHHHH
Confidence            577888777776  677777665443

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=90.90  E-value=0.58  Score=43.79  Aligned_cols=95  Identities=13%  Similarity=0.030  Sum_probs=67.7

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHhhhcCcEEeecCC
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS-MYELQFGVPMSGAILNNINT   97 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~-~~~~~la~~~~G~~~~~l~~   97 (330)
                      .|+.+|++. ++        -.+|++.+.....    .....++.++|+++.++|.+++ ....+++.+..|+..+..+.
T Consensus       212 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~  287 (570)
T 4gr5_A          212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG  287 (570)
T ss_dssp             CTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred             CCCCeEEEEECCcCCCCCeEEEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence            456677664 32        2388887743322    1234588999999999998753 45566788889998776653


Q ss_pred             -CCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729           98 -RLDAHTLSVLLQHSESKLVFVDHLHTYLL  126 (330)
Q Consensus        98 -~~~~~~l~~~l~~~~~~~i~~~~~~~~~~  126 (330)
                       ...+..+...+++.+++++...|..+..+
T Consensus       288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l  317 (570)
T 4gr5_A          288 QNPDPLEIGELVARHGVTMLQLSASLFNFL  317 (570)
T ss_dssp             SSCCHHHHHHHHHHHTCCEEEEEHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence             57888999999999999999887655443

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=90.76  E-value=1  Score=43.04  Aligned_cols=82  Identities=6%  Similarity=-0.082  Sum_probs=58.9

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH--HHHHHhhhcCcEEeecCC---CCCHHHHHHHHHhcCCcE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY--ELQFGVPMSGAILNNINT---RLDAHTLSVLLQHSESKL  115 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~--~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~  115 (330)
                      +|.+.+...+.....  ...+++++|++...++.+....  ..+++.+..|+..+..+.   ..++..+..++++.++++
T Consensus       282 ~sh~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~  359 (663)
T 1ry2_A          282 HSTAGYLLGALLTMR--YTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQ  359 (663)
T ss_dssp             ECSHHHHHHHHHHHH--HHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSE
T ss_pred             EchhHHHHHHHHHHH--HhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCE
Confidence            777776543322211  2578999999999999875543  456788999998887764   246788999999999999


Q ss_pred             EEEcccchH
Q 048729          116 VFVDHLHTY  124 (330)
Q Consensus       116 i~~~~~~~~  124 (330)
                      +++.|..+.
T Consensus       360 ~~~~Ps~~~  368 (663)
T 1ry2_A          360 FYVAPTALR  368 (663)
T ss_dssp             EEECHHHHH
T ss_pred             EEecHHHHH
Confidence            988765443

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=90.00  E-value=0.53  Score=42.81  Aligned_cols=185  Identities=15%  Similarity=0.126  Sum_probs=134.8

Q ss_pred             cCCCcEEEe-CC--------eeecHHHHHHHHHHHHHHHHHcCCCC------CCEEEEECCCCHHH--HHHHHHhhhcCc
Q 048729           28 YTDCPSLVY-NN--------TTYTWSETHRRCLQVASSLSSVGIQR------GHVVSVVAPNVPSM--YELQFGVPMSGA   90 (330)
Q Consensus        28 ~p~~~a~~~-~~--------~~~T~~el~~~~~~~a~~L~~~g~~~------gd~V~~~~~~~~~~--~~~~la~~~~G~   90 (330)
                      .++.+|++. ++        -.+|++.+...+..+...+   ++.+      +|+++.++|.++.+  +..+++.+..|+
T Consensus       181 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~  257 (480)
T 3t5a_A          181 EYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY---FADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGY  257 (480)
T ss_dssp             SCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH---CTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTC
T ss_pred             CCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh---ccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCC
Confidence            355666653 32        2389999987777666554   5555      89999999988654  456788899999


Q ss_pred             EEeecCCC---CCHHHHHHHHHhcCCcEEEEcccchHHHHHHh----c----cCc------------------hHHHH--
Q 048729           91 ILNNINTR---LDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL----S----LFP------------------QRARL--  139 (330)
Q Consensus        91 ~~~~l~~~---~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~----~----~~~------------------~~~~~--  139 (330)
                      ..+..++.   ..+..+...+++.+++ +...|.++..+....    .    .+.                  .....  
T Consensus       258 ~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~  336 (480)
T 3t5a_A          258 PAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFA  336 (480)
T ss_dssp             CEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSG
T ss_pred             ceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHh
Confidence            88877643   3678889999999999 666666554443211    0    000                  00000  


Q ss_pred             --------------------------------------------------------hhccCCcccCceeEEEeCCCCCcc
Q 048729          140 --------------------------------------------------------KARQGVKTVGLAEVDVVNPETGES  163 (330)
Q Consensus       140 --------------------------------------------------------~~~~G~~~~g~te~~i~d~~~g~~  163 (330)
                                                                              ..++|.|++ . +++|+|+++|++
T Consensus       337 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~  414 (480)
T 3t5a_A          337 RFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-P-IVRIVDSDTCIE  414 (480)
T ss_dssp             GGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-S-EEEEEETTTTEE
T ss_pred             hcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-C-EEEEEcCCCCcC
Confidence                                                                    113455555 4 788889867899


Q ss_pred             cCCCCceecEEEEecCcccccccCCchhhhcccc-----------CCCeEEeCceEEEecCceEEEEec
Q 048729          164 VKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS-----------DNGWFYTGDIGVMHADGYVEIKDR  221 (330)
Q Consensus       164 ~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~g~~~TGD~~~~~~~G~l~~~GR  221 (330)
                      ++.+  +.|||+|+|++++.|||++|+.+.+.|.           .+|||+|||+|++| ||+++|+||
T Consensus       415 ~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          415 CPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             CCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             CCCC--CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            9998  8999999999999999999999998884           46799999999997 999999998

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=89.92  E-value=1.2  Score=40.96  Aligned_cols=82  Identities=6%  Similarity=-0.058  Sum_probs=60.2

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCC--CCHHHHHHHHHhcCCcEEE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTR--LDAHTLSVLLQHSESKLVF  117 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~--~~~~~l~~~l~~~~~~~i~  117 (330)
                      +|++.+...+..+.... ..++.++|+++...|.++.. +..++.++..|+..+..+..  ..+..+...+.+.+++++.
T Consensus       165 ~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~  243 (521)
T 3l8c_A          165 ISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWT  243 (521)
T ss_dssp             EEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEE
T ss_pred             EehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEE
Confidence            89988876544333221 25788999999998887654 45567888899988776643  4678899999999999988


Q ss_pred             Ecccch
Q 048729          118 VDHLHT  123 (330)
Q Consensus       118 ~~~~~~  123 (330)
                      ..|.++
T Consensus       244 ~~P~~~  249 (521)
T 3l8c_A          244 STPSFA  249 (521)
T ss_dssp             ECHHHH
T ss_pred             eCCCHH
Confidence            776544

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=87.56  E-value=1.6  Score=40.94  Aligned_cols=68  Identities=10%  Similarity=0.036  Sum_probs=54.3

Q ss_pred             HcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecC-CCCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729           59 SVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNIN-TRLDAHTLSVLLQHSESKLVFVDHLHTYLL  126 (330)
Q Consensus        59 ~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~-~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~  126 (330)
                      ..++.++|++....+.+...  +..+++.+..|+.+++.+ ..+.+..+...+++.+++.++..|..+..+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l  330 (580)
T 3etc_A          260 WQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFL  330 (580)
T ss_dssp             TSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred             hhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHH
Confidence            46889999999998877544  334688899999888775 578899999999999999999887655443

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=86.10  E-value=1.4  Score=40.96  Aligned_cols=84  Identities=6%  Similarity=-0.191  Sum_probs=62.1

Q ss_pred             ecHHHHHHHHHHHHHHHH-----HcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCCCCCHHHHHHHHHhcCCc
Q 048729           41 YTWSETHRRCLQVASSLS-----SVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESK  114 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~-----~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~  114 (330)
                      +|++.+...+..++..+.     ...+...+++..+.+.++++ +..++..+..|+..+..+.....+.+...+++.+++
T Consensus       195 ~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t  274 (562)
T 3ite_A          195 VSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVT  274 (562)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCC
T ss_pred             ECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCC
Confidence            899999888877777654     24577889999988887654 444677788898887655433356677889999999


Q ss_pred             EEEEcccchH
Q 048729          115 LVFVDHLHTY  124 (330)
Q Consensus       115 ~i~~~~~~~~  124 (330)
                      .+...|.++.
T Consensus       275 ~~~~~P~~l~  284 (562)
T 3ite_A          275 HAGIVPSLLD  284 (562)
T ss_dssp             EEEECHHHHH
T ss_pred             EEEcCHHHHh
Confidence            9888765443

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=84.10  E-value=1.6  Score=45.29  Aligned_cols=95  Identities=14%  Similarity=0.132  Sum_probs=68.5

Q ss_pred             cCCCcEEE-eCC--------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHhhhcCcEEeecCC
Q 048729           28 YTDCPSLV-YNN--------TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM-YELQFGVPMSGAILNNINT   97 (330)
Q Consensus        28 ~p~~~a~~-~~~--------~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~-~~~~la~~~~G~~~~~l~~   97 (330)
                      .|+.+|++ +++        -.+|.+.+...    .......++.++|+++.+.+.+++. +..+++.+..|+.++..+.
T Consensus       605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~  680 (1304)
T 2vsq_A          605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE  680 (1304)
T ss_dssp             CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred             CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence            46666665 332        12888877532    1222356889999999999988765 4456888899998887764


Q ss_pred             --CCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729           98 --RLDAHTLSVLLQHSESKLVFVDHLHTYLL  126 (330)
Q Consensus        98 --~~~~~~l~~~l~~~~~~~i~~~~~~~~~~  126 (330)
                        ..++..+...+.+.+++++...|.++..+
T Consensus       681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l  711 (1304)
T 2vsq_A          681 HTLLDTERLTDLILQENVNVMFATTALFNLL  711 (1304)
T ss_dssp             GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHcCCcEEEccHHHHHHH
Confidence              46788999999999999998877655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	330
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-59
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	6e-19
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	9e-58
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-19
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-54
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	4e-16
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	6e-52
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	1e-13
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-50
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-19
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	3e-46
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	8e-22
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	9e-46
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	3e-18

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  197 bits (501), Expect = 2e-59
 Identities = 84/196 (42%), Positives = 119/196 (60%), Gaps = 8/196 (4%)

Query: 134 PQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATR 193
            ++  LKA+ G   + L  + V + E G  V +DG +LGEV L+G  +T GY+ ++EATR
Sbjct: 341 EEKLTLKAKTG-LPIPLVRLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATR 398

Query: 194 RCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAV 253
             ++ +G+F TGDI V   +GYVEIKDR KD+I SGGE I S ++E+ L     V EAAV
Sbjct: 399 SALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAV 458

Query: 254 VARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEY-CRARLPRYMVPRKVVFSEELPKT 312
           VA P   W E P A V  + +     KPT +E+ E+  +A   ++ +P   VF+EE+P+T
Sbjct: 459 VAIPHPKWQERPLAVVVPRGE-----KPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRT 513

Query: 313 STGKIQKYLLREFAKS 328
           S GK  K  LRE  K+
Sbjct: 514 SAGKFLKRALREQYKN 529

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 85.3 bits (210), Expect = 6e-19
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 6   LPNSANSTPLTTLGFLERAAAAYTDCPSLVYNNT----TYTWSETHRRCLQVASSLSSVG 61
            P++     L    FLERAAA +     +   +T      T++E ++R  ++   L ++G
Sbjct: 2   FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALG 61

Query: 62  IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHL 121
           +  G  V+ +  N     E  F VP  GA+L+  N RL    ++ +L H+E K++  D  
Sbjct: 62  VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPN 121

Query: 122 HTYLLLEALSLFP 134
              L+        
Sbjct: 122 LLPLVEAIRGELK 134

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  193 bits (490), Expect = 9e-58
 Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 7/182 (3%)

Query: 146 KTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTG 205
           K V   E  VV+ +TG+++  +    GE+ +RG  +  GY  + EAT   I  +GW ++G
Sbjct: 361 KVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 418

Query: 206 DIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIP 265
           DI     D +  I DR K +I   G  +  AE+ES+L     + +A V   PD   GE+P
Sbjct: 419 DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELP 478

Query: 266 CAFVSLKRDLELTKKPTEKEIIEYCRARL-PRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
            A V L+      K  TEKEI++Y  +++     +   VVF +E+PK  TGK+    +RE
Sbjct: 479 AAVVVLEHG----KTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIRE 534

Query: 325 FA 326
             
Sbjct: 535 IL 536

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 86.1 bits (212), Expect = 3e-19
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 8/138 (5%)

Query: 5   LLPNSANSTPL--TTLG-FLERAAAAYTDCPSLV-----YNNTTYTWSETHRRCLQVASS 56
           +    A   PL   T G  L +A   Y   P  +     +     T++E     +++A +
Sbjct: 4   IKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEA 63

Query: 57  LSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLV 116
           +   G+   H + V + N    +    G    G  +   N   +   L   +  S+  +V
Sbjct: 64  MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 123

Query: 117 FVDHLHTYLLLEALSLFP 134
           FV       +L      P
Sbjct: 124 FVSKKGLQKILNVQKKLP 141

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  186 bits (472), Expect = 2e-54
 Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 12/214 (5%)

Query: 121 LHTYLLLEA----LSLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVL 176
           + T+   E     ++  P    LKA    +     +  +V+ E G     +G + G +V+
Sbjct: 406 VDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNE-GHPQ--EGATEGNLVI 462

Query: 177 RGGCVTV--GYFKDKEATRRCI--SDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGEN 232
                      F D E   +    +    +++GD      DGY  I  R  DV+   G  
Sbjct: 463 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHR 522

Query: 233 ICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRA 292
           + +AE+ES L +   + EAAVV  P    G+   A+V+L    E + +    E+  + R 
Sbjct: 523 LGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE-LYAEVRNWVRK 581

Query: 293 RLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFA 326
            +     P  + +++ LPKT +GKI + +LR+ A
Sbjct: 582 EIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 615

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 77.0 bits (189), Expect = 4e-16
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 10/150 (6%)

Query: 21  LERAAAAYTDCPSLVY------NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPN 74
           L+R      D  ++++       +   ++ E HR   + A++L  +GI++G VV++  P 
Sbjct: 78  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 137

Query: 75  VPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP 134
           VP            GA+ + I        ++  +  S S+LV          + A    P
Sbjct: 138 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD----EGVRAGRSIP 193

Query: 135 QRARLKARQGVKTVGLAEVDVVNPETGESV 164
            +  +        V   E  +V   TG  +
Sbjct: 194 LKKNVDDALKNPNVTSVEHVIVLKRTGSDI 223

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  179 bits (454), Expect = 6e-52
 Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTV--GYFKDKEATRRCISD--NGWFYTGDI 207
           +  V++P TGE +       G + ++    +     +K+ +       +   G+++TGD 
Sbjct: 429 DAVVLDPNTGEELNTSHAE-GVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDG 487

Query: 208 GVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCA 267
                DGY+ I  R  DV+   G  + +AE+E+ +     V E AVV   D   G+   A
Sbjct: 488 AAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAA 547

Query: 268 FVSLKRDLELTKKPTE------KEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYL 321
           FV LK     +    +      K ++   R  +  +  P+ ++  ++LPKT +GKI + +
Sbjct: 548 FVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRI 607

Query: 322 LREFA 326
           LR+  
Sbjct: 608 LRKIL 612

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (169), Expect = 1e-13
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 21  LERAAAAYTDCPSLVY------NNTTYTWSETHRRCLQVASSL-SSVGIQRGHVVSVVAP 73
           ++R A    +  ++++         + T+ E      QVA  L  S+G+++G  V+V  P
Sbjct: 65  VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 124

Query: 74  NVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLL 126
            VP        +   GAI + +     +++L   +   +SK+V          
Sbjct: 125 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGG 177

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  173 bits (439), Expect = 1e-50
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 14/176 (7%)

Query: 155 VVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDN------GWFYTGDIG 208
            +  E  +         GE+ + G  +  GY+K  E T +   DN        + TGD  
Sbjct: 342 YIVDENLQLKSVGEA--GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQA 399

Query: 209 VMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAF 268
              +DG +E   R  + +   G  +   EVES+L     ++E AV    D       CA+
Sbjct: 400 RWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAY 459

Query: 269 VSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLRE 324
              ++ +        +++ ++    LP YM+P   +  +++P TS GKI +  L E
Sbjct: 460 FVSEKHI------PLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 86.5 bits (213), Expect = 2e-19
 Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

Query: 16  TTLG-FLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPN 74
            T+    E   +   +  ++V  N   T+ E + +  Q+A      GI +  +V ++   
Sbjct: 23  KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEK 82

Query: 75  VPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDH 120
              ++     V  +G     I+       +  +L  S+++++    
Sbjct: 83  SIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQK 128

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  162 bits (410), Expect = 3e-46
 Identities = 63/198 (31%), Positives = 97/198 (48%), Gaps = 9/198 (4%)

Query: 131 SLFPQRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKE 190
            L      +   QG       E  V + +    VK      G ++ RG     GY+K +E
Sbjct: 341 RLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGET--GHLLTRGPYTIRGYYKAEE 397

Query: 191 ATRRCISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNE 250
                 +++G++ TGDI  +  DGY+ ++ R+KD I  GGE + + EVE+ L +  AV++
Sbjct: 398 HNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHD 457

Query: 251 AAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRAR-LPRYMVPRKVVFSEEL 309
           AA+V+ PD F GE  C F+  + +      P   E+  + R R L  Y +P +V F E  
Sbjct: 458 AAMVSMPDQFLGERSCVFIIPRDE-----APKAAELKAFLRERGLAAYKIPDRVEFVESF 512

Query: 310 PKTSTGKIQKYLLREFAK 327
           P+T  GK+ K  LRE   
Sbjct: 513 PQTGVGKVSKKALREAIS 530

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 93.5 bits (231), Expect = 8e-22
 Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 1/116 (0%)

Query: 16  TTLG-FLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPN 74
            T G  L   AA Y D  ++   NT +++ E   R  ++A+    +GIQ+   V V  PN
Sbjct: 25  ETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPN 84

Query: 75  VPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEAL 130
           +   +E+ F +   GA+         +  ++   + +E+    +   ++     +L
Sbjct: 85  IKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSL 140

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  160 bits (404), Expect = 9e-46
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 6/184 (3%)

Query: 142 RQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGW 201
            +           V      + +  +G     +V       VGY    +AT   + D GW
Sbjct: 322 TEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GW 380

Query: 202 FYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFW 261
           + T D+ V   +G V I  R  D+IISGGENI  +E+E VL +   V E  V+   D  W
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRW 440

Query: 262 GEIPCAFVSLKRDLELTKKPTEKEIIEYCRA-RLPRYMVPRKVVFSEELPKTSTGKIQKY 320
           G+   A V  +      +  +   +  +CR+  L  +  P++    ++LPK +  K+ + 
Sbjct: 441 GQSVTACVVPRLG----ETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRR 496

Query: 321 LLRE 324
            L +
Sbjct: 497 QLVQ 500

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 83.2 bits (204), Expect = 3e-18
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 17  TLG-FLERAAAAYTDCPSLVY--NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAP 73
           T+   L RAA    D  +L         T +E   R   VA+ L + G++    V+VVAP
Sbjct: 3   TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62

Query: 74  NVPSMYELQFGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVD 119
           N   +      +   GA+   +N RL +  L+ L++  E     + 
Sbjct: 63  NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIA 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	92.28
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	87.29
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	81.67

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.5e-57  Score=424.57  Aligned_cols=317  Identities=35%  Similarity=0.516  Sum_probs=248.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCcEEEeCC----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 048729            7 PNSANSTPLTTLGFLERAAAAYTDCPSLVYNN----TTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQ   82 (330)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~~p~~~a~~~~~----~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~   82 (330)
                      |...-....|+.++|.+.++++||++|+++..    +++||+||.+++.++|++|.+.|+++||+|+++++|++++++++
T Consensus         3 p~~~~~~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~   82 (534)
T d1v25a_           3 PSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAY   82 (534)
T ss_dssp             BCCBCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCccCCCCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHH
Confidence            44555567799999999999999999999843    56999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhccCc----------------------------
Q 048729           83 FGVPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP----------------------------  134 (330)
Q Consensus        83 la~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~----------------------------  134 (330)
                      |||+++|++++|+++.++.+++.++++..+++.++++...............                            
T Consensus        83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (534)
T d1v25a_          83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEAD  162 (534)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCC
T ss_pred             HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeeccccccccccccccccccc
Confidence            9999999999999999999999999999999999998877766654433221                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       163 ~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~  242 (534)
T d1v25a_         163 PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVL  242 (534)
T ss_dssp             CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEE
T ss_pred             ccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeee
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       243 ~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~i~~~yG~te~  322 (534)
T d1v25a_         243 PGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTET  322 (534)
T ss_dssp             CTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGG
T ss_pred             ccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHhCCeeeeecccccc
Confidence                                                                                            


Q ss_pred             -------------------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcc
Q 048729          135 -------------------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRC  195 (330)
Q Consensus       135 -------------------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~  195 (330)
                                         .......++|.|++|. +++|+|+ +|++++.+.++.|||+++|++++.||+++++.+...
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~-~~~i~d~-~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~  400 (534)
T d1v25a_         323 SPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSA  400 (534)
T ss_dssp             SSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTT
T ss_pred             ccceeecccCccccccCccccccccccceeccCCc-EEEEECC-CCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhh
Confidence                               2223456889999996 9999998 899998865588999999999999999999999999


Q ss_pred             ccCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCc
Q 048729          196 ISDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDL  275 (330)
Q Consensus       196 ~~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  275 (330)
                      +..+|||+|||+|++|+||.++++||.||+||++|++|+|.+||+.|.+||+|.+++|++..++..+++++++|++..+.
T Consensus       401 ~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~  480 (534)
T d1v25a_         401 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK  480 (534)
T ss_dssp             BCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------
T ss_pred             cccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCC
Confidence            98899999999999999999999999999999999999999999999999999999999999988889999998887654


Q ss_pred             ccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhhc
Q 048729          276 ELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKSV  329 (330)
Q Consensus       276 ~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~  329 (330)
                      .    ...+.+...++++|++|++|+.|+++++||+|++||++|++|+++|+++
T Consensus       481 ~----~~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~~  530 (534)
T d1v25a_         481 P----TPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY  530 (534)
T ss_dssp             -----------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred             C----CHHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHhh
Confidence            3    2233344457788999999999999999999999999999999999875

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=4.4e-56  Score=418.54  Aligned_cols=310  Identities=26%  Similarity=0.373  Sum_probs=268.9

Q ss_pred             CCCCCHHHHHHHHHHhc---CCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhh
Q 048729           12 STPLTTLGFLERAAAAY---TDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVP   86 (330)
Q Consensus        12 ~~~~~~~~~l~~~~~~~---p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~   86 (330)
                      .+..|+.++|.+.++++   |+.+|+.+.  ++++||+||.+.+.++|++|.+.|+++||+|+++++|++++++++|||+
T Consensus        14 ~~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~   93 (541)
T d1lcia_          14 LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL   93 (541)
T ss_dssp             CCSSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHH
Confidence            33468999999999888   777788875  4689999999999999999999999999999999999999999999999


Q ss_pred             hcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhccCc--------------------------------
Q 048729           87 MSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP--------------------------------  134 (330)
Q Consensus        87 ~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--------------------------------  134 (330)
                      ++|++++|+++.++.+++.++++..++++++++....+.+.......+                                
T Consensus        94 ~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (541)
T d1lcia_          94 FIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGF  173 (541)
T ss_dssp             HHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEEHHHHHHHHSCTTC
T ss_pred             HhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccchhhhhhhhhccccc
Confidence            999999999999999999999999999999999887765543322111                                


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       174 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  253 (541)
T d1lcia_         174 NEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYL  253 (541)
T ss_dssp             CTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred             cccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccccccccccccccccc
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~  333 (541)
T d1lcia_         254 ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGI  333 (541)
T ss_dssp             HHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCC
T ss_pred             ccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccccccccccccCCcee
Confidence                                                                                            


Q ss_pred             -----------------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcccc
Q 048729          135 -----------------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS  197 (330)
Q Consensus       135 -----------------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~  197 (330)
                                       .......++|.|++|+ +++|+|+++|++++.+  +.|||+++|++++.||+++++.+...+.
T Consensus       334 ~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~-~~~i~d~d~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~  410 (541)
T d1lcia_         334 RQGYGLTETTSAILITPEGDDKPGAVGKVVPFF-EAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALID  410 (541)
T ss_dssp             BCEECCGGGSSCSEECCCC---CCCCBEECTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTBHHHHHHHBC
T ss_pred             eecCCccccCceEEecCcccCCCCccccccCCC-EEEEEECCCCcCCCCC--CeEEEEEccCccCCeeCCChhhhhhccc
Confidence                             2233456788899996 9999998899999998  8899999999999999999998888888


Q ss_pred             CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCccc
Q 048729          198 DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLEL  277 (330)
Q Consensus       198 ~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  277 (330)
                      .+|||+|||+|++|++|.+++.||.||+||++|++|+|.+||+.|.++|+|.+++|++..++..+++++++|+++++.. 
T Consensus       411 ~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~-  489 (541)
T d1lcia_         411 KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT-  489 (541)
T ss_dssp             TTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC-
T ss_pred             CCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCC-
Confidence            7999999999999999999999999999999999999999999999999999999999998888899999999988765 


Q ss_pred             CCCCCHHHHHHHHHhcCCCCC-CCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          278 TKKPTEKEIIEYCRARLPRYM-VPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       278 ~~~~~~~~l~~~l~~~l~~~~-~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                         .+.+++++.+++++.++. +|..++++++||+|++||++|++|++++.+
T Consensus       490 ---~~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~  538 (541)
T d1lcia_         490 ---MTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK  538 (541)
T ss_dssp             ---CCHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHH
Confidence               778999999999998875 799999999999999999999999999865

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=3.3e-55  Score=410.35  Aligned_cols=302  Identities=20%  Similarity=0.280  Sum_probs=267.6

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      ...||.++|.++|+++||++|+++.++++||+||.+.++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        21 ~~~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~  100 (514)
T d1amua_          21 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY  100 (514)
T ss_dssp             TTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCCcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHHHhccCc--------------------------------------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLEALSLFP--------------------------------------  134 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--------------------------------------  134 (330)
                      +|+++.++++++.++++..++++++++......+........                                      
T Consensus       101 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~  180 (514)
T d1amua_         101 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGN  180 (514)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTTSCCSCCCCCCCTTSEEEEEEEC-----
T ss_pred             EEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccccccccccccccccccccCCCCCCcccceEEEEccCCCCC
Confidence            999999999999999999999999999877665543222111                                      


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       181 PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (514)
T d1amua_         181 PKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITV  260 (514)
T ss_dssp             CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCE
T ss_pred             cccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccchhhhhhhhhhhhccc
Confidence                                                                                            


Q ss_pred             --------------------------------hHHH-------------------------------HhhccCCcccCce
Q 048729          135 --------------------------------QRAR-------------------------------LKARQGVKTVGLA  151 (330)
Q Consensus       135 --------------------------------~~~~-------------------------------~~~~~G~~~~g~t  151 (330)
                                                      ...+                               ...+.|.++++. 
T Consensus       261 ~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  339 (514)
T d1amua_         261 ITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNT-  339 (514)
T ss_dssp             EEECHHHHTTSCTTTCCSCSEEEEESSCCCHHHHHHHTTTSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTE-
T ss_pred             ccceeeecccccccccccccEEEEecccCCHHHhhhhccceeEEEeeccccCceeeeeccccccccCcccccccceeee-
Confidence                                            0000                               011222233343 


Q ss_pred             eEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhcccc------CCCeEEeCceEEEecCceEEEEecCCCe
Q 048729          152 EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCIS------DNGWFYTGDIGVMHADGYVEIKDRSKDV  225 (330)
Q Consensus       152 e~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~------~~g~~~TGD~~~~~~~G~l~~~GR~dd~  225 (330)
                      ++.+.|+ ++++++.+  +.|||+|+|++++.||++++..+...|.      .+|||+|||+|++|++|+++++||.+|+
T Consensus       340 ~v~~~d~-~~~~~~~g--~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~  416 (514)
T d1amua_         340 QIYIVDE-NLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQ  416 (514)
T ss_dssp             EEEEECT-TSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGE
T ss_pred             eEeeecc-cceecCCC--CeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCE
Confidence            5677777 88999998  8899999999999999999998877662      3789999999999999999999999999


Q ss_pred             EEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEE
Q 048729          226 IISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVF  305 (330)
Q Consensus       226 ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~  305 (330)
                      ||.+|++|+|.+||+.|.+||+|.+++|++.+++..+++++++++.+++      .+.++++++++++|+.|++|..|++
T Consensus       417 i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~------~~~~~l~~~~~~~l~~~~~p~~i~~  490 (514)
T d1amua_         417 VKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH------IPLEQLRQFSSEELPTYMIPSYFIQ  490 (514)
T ss_dssp             EEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC------CCHHHHHHHHHHHSCGGGSCSEEEE
T ss_pred             EEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCC------CCHHHHHHHHHhhCCcccCceEEEE
Confidence            9999999999999999999999999999999998888999999988776      5689999999999999999999999


Q ss_pred             ccCCCCCCCCcccHHHHHH
Q 048729          306 SEELPKTSTGKIQKYLLRE  324 (330)
Q Consensus       306 v~~lP~t~~GKv~r~~l~~  324 (330)
                      +++||+|++||++|++|++
T Consensus       491 v~~lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         491 LDKMPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             CSSCCBCTTSSBCGGGSCC
T ss_pred             eCCCCCCCCcChhHHhcCC
Confidence            9999999999999999987

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=4.4e-54  Score=404.26  Aligned_cols=308  Identities=28%  Similarity=0.450  Sum_probs=276.5

Q ss_pred             CCCCHHHHHHHHHHhcCCCcEEEeCCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           13 TPLTTLGFLERAAAAYTDCPSLVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        13 ~~~~~~~~l~~~~~~~p~~~a~~~~~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      .+.|+.++|.++|+++||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        23 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~  102 (536)
T d1mdba_          23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP  102 (536)
T ss_dssp             CSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCCCHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHHH--------HhccCc------------------------------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLLE--------ALSLFP------------------------------  134 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~--------~~~~~~------------------------------  134 (330)
                      +|+++.++.+++.++++..++++++++.........        ......                              
T Consensus       103 vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (536)
T d1mdba_         103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS  182 (536)
T ss_dssp             EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCCCCCCCCCCTT
T ss_pred             EecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccchhhcccCCcCCCccCcc
Confidence            999999999999999999999999987533321100        000000                              


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       183 d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~  262 (536)
T d1mdba_         183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD  262 (536)
T ss_dssp             SEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHH
T ss_pred             chHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccccccccccccCCCCHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (536)
T d1mdba_         263 DAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRL  342 (536)
T ss_dssp             HHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCT
T ss_pred             HHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhccCceeeecccccccccccccc
Confidence                                                                                            


Q ss_pred             --hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEecCcccccccCCchhhhccccCCCeEEeCceEEEec
Q 048729          135 --QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEATRRCISDNGWFYTGDIGVMHA  212 (330)
Q Consensus       135 --~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~  212 (330)
                        .......+.|.|+.+.+...+.++ +|++++.+  +.|||+++|+.++.||++++..+...+..+|||+|||++++++
T Consensus       343 ~~~~~~~~~~~g~p~~~~~~~~v~~~-~g~~~~~~--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~  419 (536)
T d1mdba_         343 DDPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR  419 (536)
T ss_dssp             TSCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred             ccccccccCCcccCCCCcceEEEEcC-CCCeeccc--ccceeecCCCccccccccccccccccccccCccccCccccccC
Confidence              444556788989887756666666 89999998  8899999999999999999999988888899999999999999


Q ss_pred             CceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHh
Q 048729          213 DGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRA  292 (330)
Q Consensus       213 ~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~  292 (330)
                      ||+++++||.||++|++|++|+|.+||+.|.+||+|.+++|++..++..+++++++|+..++.     ...+++++++++
T Consensus       420 dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~-----~~~~~l~~~l~~  494 (536)
T d1mdba_         420 DGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA-----PKAAELKAFLRE  494 (536)
T ss_dssp             TSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC-----CCHHHHHHHHHH
T ss_pred             CCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCC-----CCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999888888999999887764     578999999998


Q ss_pred             c-CCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          293 R-LPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       293 ~-l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      + |++|++|+.|+++++||+|++||++|++|++++++
T Consensus       495 ~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  531 (536)
T d1mdba_         495 RGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE  531 (536)
T ss_dssp             TTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred             cCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHH
Confidence            6 99999999999999999999999999999999853

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.7e-52  Score=401.31  Aligned_cols=312  Identities=24%  Similarity=0.348  Sum_probs=265.0

Q ss_pred             CCCCCHHH-HHHHHHHhcCCCcEEEeC------CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Q 048729           12 STPLTTLG-FLERAAAAYTDCPSLVYN------NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFG   84 (330)
Q Consensus        12 ~~~~~~~~-~l~~~~~~~p~~~a~~~~------~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la   84 (330)
                      ...+|+.+ .+.++++.+||++|+++.      .+++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        68 ~~~~N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA  147 (643)
T d1pg4a_          68 DGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA  147 (643)
T ss_dssp             TCEECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CChhhHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHH
Confidence            33456665 455778889999999953      26799999999999999999999999999999999999999999999


Q ss_pred             hhhcCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch---------HHHHHHhccC----------------------
Q 048729           85 VPMSGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT---------YLLLEALSLF----------------------  133 (330)
Q Consensus        85 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~----------------------  133 (330)
                      |+++|++++|+++.++++.+.+++++.+++++++++...         ..+.......                      
T Consensus       148 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~  227 (643)
T d1pg4a_         148 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQE  227 (643)
T ss_dssp             HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCB
T ss_pred             HHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccccccc
Confidence            999999999999999999999999999999999865321         1111110000                      


Q ss_pred             --------------------------c-----------------------------------------------------
Q 048729          134 --------------------------P-----------------------------------------------------  134 (330)
Q Consensus       134 --------------------------~-----------------------------------------------------  134 (330)
                                                +                                                     
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~  307 (643)
T d1pg4a_         228 GRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT  307 (643)
T ss_dssp             TTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHH
T ss_pred             ccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHH
Confidence                                      0                                                     


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       308 g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~  387 (643)
T d1pg4a_         308 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPIN  387 (643)
T ss_dssp             HHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCC
T ss_pred             HHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCC
Confidence                                                                                            


Q ss_pred             -------------------------------------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEe
Q 048729          135 -------------------------------------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLR  177 (330)
Q Consensus       135 -------------------------------------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~  177 (330)
                                                           ......+++|.|++|+ +++++|+ +|++++.+  +.|||+|+
T Consensus       388 ~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~-~v~ivd~-~g~~~~~g--~~Gel~v~  463 (643)
T d1pg4a_         388 PEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGV-QPALVDN-EGHPQEGA--TEGNLVIT  463 (643)
T ss_dssp             HHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTC-CEEEECT-TCCBCCSS--EEEEEEEC
T ss_pred             HHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCC-EEEEECC-CCCCCCCC--ceEEEEEe
Confidence                                                 0011235667788886 8999998 89999988  89999999


Q ss_pred             cC--cccccccCCchhhhccc--cCCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEE
Q 048729          178 GG--CVTVGYFKDKEATRRCI--SDNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAV  253 (330)
Q Consensus       178 ~~--~~~~gy~~~~~~~~~~~--~~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v  253 (330)
                      |+  +++.|||++++.+...+  ..+|||+|||+|++|+||+++++||+||+||++|++|+|.+||++|.+||+|.+|+|
T Consensus       464 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaV  543 (643)
T d1pg4a_         464 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV  543 (643)
T ss_dssp             SCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEE
T ss_pred             cCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence            95  68899999998776554  238999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          254 VARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       254 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      ++.+++..++.++++|+++++...+. ....+++++++++|++|++|+.|+++++||+|++||++|++|++++..
T Consensus       544 vg~~d~~~ge~~~a~Vv~~~~~~~~~-~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~  617 (643)
T d1pg4a_         544 VGIPHAIKGQAIYAYVTLNHGEEPSP-ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG  617 (643)
T ss_dssp             EEEEETTTEEEEEEEEEECTTCCCCH-HHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred             EEEECCCCCeEEEEEEEECCCCCCCH-HHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcC
Confidence            99999888899999999998765110 123579999999999999999999999999999999999999998854

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-52  Score=400.76  Aligned_cols=311  Identities=23%  Similarity=0.390  Sum_probs=260.6

Q ss_pred             CH-HHHHHHHHHhcCCCcEEEeC------CeeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHhhh
Q 048729           16 TT-LGFLERAAAAYTDCPSLVYN------NTTYTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPM   87 (330)
Q Consensus        16 ~~-~~~l~~~~~~~p~~~a~~~~------~~~~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~~~~~la~~~   87 (330)
                      |+ .+.|.++++++||++|+++.      .+++||+||.++++++|++|+ +.|+++||+|+++++|++++++++|||++
T Consensus        59 N~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~  138 (640)
T d1ry2a_          59 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR  138 (640)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhcc
Confidence            44 56788899999999999963      268999999999999999997 68999999999999999999999999999


Q ss_pred             cCcEEeecCCCCCHHHHHHHHHhcCCcEEEEcccch---------HHHHHHhccCc------------------------
Q 048729           88 SGAILNNINTRLDAHTLSVLLQHSESKLVFVDHLHT---------YLLLEALSLFP------------------------  134 (330)
Q Consensus        88 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~~------------------------  134 (330)
                      +|++++|+++.++++++.+++++.+++++++.....         ..+........                        
T Consensus       139 ~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (640)
T d1ry2a_         139 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDL  218 (640)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEE
T ss_pred             CceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccccccc
Confidence            999999999999999999999999999999876432         11111110000                        


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  298 (640)
T d1ry2a_         219 DWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTY  298 (640)
T ss_dssp             EHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHH
T ss_pred             cccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       299 ~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~  378 (640)
T d1ry2a_         299 VVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVW  378 (640)
T ss_dssp             TTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHH
T ss_pred             HHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------------hHHHHhhccCCcccCceeEEEeCCCCCcccCCCCceecEEEEec--
Q 048729          135 ----------------------------------QRARLKARQGVKTVGLAEVDVVNPETGESVKRDGVSLGEVVLRG--  178 (330)
Q Consensus       135 ----------------------------------~~~~~~~~~G~~~~g~te~~i~d~~~g~~~~~~~~~~Gel~v~~--  178 (330)
                                                        ......+++|.|++|. +++|+|++++..++..+ ..|||++++  
T Consensus       379 ~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~-~~~i~d~~~~~~~~~~~-~~Gel~i~~~~  456 (640)
T d1ry2a_         379 EWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGI-DAVVLDPNTGEELNTSH-AEGVLAVKAAW  456 (640)
T ss_dssp             HHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTC-CEEEECSSSTTCEECSS-CEEEEEESSCC
T ss_pred             HHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCc-eEEEEeCCCCcccCCCC-ceEEEEEEecC
Confidence                                              1112345678888996 99999986666554443 679999998  


Q ss_pred             CcccccccCCchhhhcccc--CCCeEEeCceEEEecCceEEEEecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEee
Q 048729          179 GCVTVGYFKDKEATRRCIS--DNGWFYTGDIGVMHADGYVEIKDRSKDVIISGGENICSAEVESVLYSITAVNEAAVVAR  256 (330)
Q Consensus       179 ~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~~G~l~~~GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  256 (330)
                      ++++.|||++++.+.+.|.  .+|||+|||+|++|+||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.
T Consensus       457 p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~  536 (640)
T d1ry2a_         457 PSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGF  536 (640)
T ss_dssp             TTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECC
T ss_pred             CCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEE
Confidence            5799999999998887763  35999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCceeEEEEEecCCcccCC------CCCHHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCcccHHHHHHHhhh
Q 048729          257 PDMFWGEIPCAFVSLKRDLELTK------KPTEKEIIEYCRARLPRYMVPRKVVFSEELPKTSTGKIQKYLLREFAKS  328 (330)
Q Consensus       257 ~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~  328 (330)
                      +++..+++++++|+++++.....      ....+++.+.++++|++|++|+.|+++++||+|++||++|++|++++.+
T Consensus       537 ~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~  614 (640)
T d1ry2a_         537 NDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG  614 (640)
T ss_dssp             CCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred             ECCCCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhC
Confidence            99988999999999988754221      1234678889999999999999999999999999999999999998754

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=3.3e-50  Score=373.98  Aligned_cols=305  Identities=26%  Similarity=0.364  Sum_probs=256.0

Q ss_pred             CCHHHHHHHHHHhcCCCcEEEeC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHhhhcCcEE
Q 048729           15 LTTLGFLERAAAAYTDCPSLVYN--NTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL   92 (330)
Q Consensus        15 ~~~~~~l~~~~~~~p~~~a~~~~--~~~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~~~~la~~~~G~~~   92 (330)
                      .||.++|.++++++||++|+++.  ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~   81 (503)
T d3cw9a1           2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (503)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            48999999999999999999974  5799999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEcccchHHHH--HHhccCc------------------------------------
Q 048729           93 NNINTRLDAHTLSVLLQHSESKLVFVDHLHTYLLL--EALSLFP------------------------------------  134 (330)
Q Consensus        93 ~~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~--~~~~~~~------------------------------------  134 (330)
                      +|+++.++++++.++++..+++++++.........  .......                                    
T Consensus        82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T  161 (503)
T d3cw9a1          82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYT  161 (503)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEETTEECCCSCCCCCCCCCTTSEEEEEEE
T ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchhhhhhhcccccCCccccccchhhhhhhhccc
Confidence            99999999999999999999999998765332111  1100000                                    


Q ss_pred             --------------------------------------------------------------------------------
Q 048729          135 --------------------------------------------------------------------------------  134 (330)
Q Consensus       135 --------------------------------------------------------------------------------  134 (330)
                                                                                                      
T Consensus       162 SGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  241 (503)
T d3cw9a1         162 SGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQ  241 (503)
T ss_dssp             CCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHH
T ss_pred             ccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccccccccChHHhhhhhh
Confidence                                                                                            


Q ss_pred             ----------------------------------------------hHHHHhhcc---CCcccCceeEE-----------
Q 048729          135 ----------------------------------------------QRARLKARQ---GVKTVGLAEVD-----------  154 (330)
Q Consensus       135 ----------------------------------------------~~~~~~~~~---G~~~~g~te~~-----------  154 (330)
                                                                    .........   ....||.||..           
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~  321 (503)
T d3cw9a1         242 QEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTG  321 (503)
T ss_dssp             HHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSS
T ss_pred             hceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccccccccccccccccceeeeecccccc
Confidence                                                          111111111   12234444321           


Q ss_pred             --------------EeCCCCCcccCCCCceecEEEEecC-cccccccCCchhhhccccCCCeEEeCceEEEecCceEEEE
Q 048729          155 --------------VVNPETGESVKRDGVSLGEVVLRGG-CVTVGYFKDKEATRRCISDNGWFYTGDIGVMHADGYVEIK  219 (330)
Q Consensus       155 --------------i~d~~~g~~~~~~~~~~Gel~v~~~-~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~~~  219 (330)
                                    ......++.++.+  +.|++.+.+. ....+|++++..+.+.|. +|||+|||+|++|+||.++++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~g~~~~~~~~~~~~~~~~~~~~t~~~~~-~g~~~TgD~g~~~~dG~l~~~  398 (503)
T d3cw9a1         322 TEMAPGFFSEVRIVRIGGGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRIL  398 (503)
T ss_dssp             SEEBCCTTCCEEEECTTSCTTCBCCTT--CCEEEEEECCTTSCCCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEE
T ss_pred             ccccccccccceeeeeecccCcccCCC--ccccccccccccccccccCChhhhHHHhc-CCceecccccccccCCeEEeC
Confidence                          1122366777777  7787777755 577788899988888886 899999999999999999999


Q ss_pred             ecCCCeEEeCCeecCHHHHHHHHhcCcCcceEEEEeecCCCCCceeEEEEEecCCcccCCCCCHHHHHHHHH-hcCCCCC
Q 048729          220 DRSKDVIISGGENICSAEVESVLYSITAVNEAAVVARPDMFWGEIPCAFVSLKRDLELTKKPTEKEIIEYCR-ARLPRYM  298 (330)
Q Consensus       220 GR~dd~ik~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~-~~l~~~~  298 (330)
                      ||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..+++++++|+++.+..    .+.+++.++++ ++|++|+
T Consensus       399 GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~----~~~~~l~~~~~~~~l~~~~  474 (503)
T d3cw9a1         399 GRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET----LSADALDTFCRSSELADFK  474 (503)
T ss_dssp             EESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----CCHHHHHHHHHHSSSCGGG
T ss_pred             CCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCC----CCHHHHHHHHHhcCCCCCC
Confidence            999999999999999999999999999999999999998888889999999987765    77899999995 6899999


Q ss_pred             CCceEEEccCCCCCCCCcccHHHHHHHh
Q 048729          299 VPRKVVFSEELPKTSTGKIQKYLLREFA  326 (330)
Q Consensus       299 ~p~~~~~v~~lP~t~~GKv~r~~l~~~~  326 (330)
                      +|+.|+++++||+|++||++|++|++++
T Consensus       475 ~P~~i~~v~~~P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         475 RPKRYFILDQLPKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             SCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred             CccEEEEECCCCcCCCcCccHHHHHHhc
Confidence            9999999999999999999999999986

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=92.28  E-value=0.25  Score=44.87  Aligned_cols=84  Identities=11%  Similarity=0.046  Sum_probs=61.4

Q ss_pred             ecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCC---CCCHHHHHHHHHhcCCc
Q 048729           41 YTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINT---RLDAHTLSVLLQHSESK  114 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~-~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~  114 (330)
                      +|.+.+....   +..+. ..+++++|++....|.+..+  ...+++.+..|+..+..+.   ...+..+.+++++.+++
T Consensus       272 ~sh~~~l~~~---~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt  348 (643)
T d1pg4a_         272 HTTGGYLVYA---ATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN  348 (643)
T ss_dssp             EESHHHHHHH---HHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCS
T ss_pred             EccHHHHHHH---HHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCc
Confidence            6666653322   22233 46889999999999987544  3456788899998887652   23678899999999999


Q ss_pred             EEEEcccchHHHH
Q 048729          115 LVFVDHLHTYLLL  127 (330)
Q Consensus       115 ~i~~~~~~~~~~~  127 (330)
                      .+.+.|..+..+.
T Consensus       349 ~~~~~P~~l~~l~  361 (643)
T d1pg4a_         349 ILYTAPTAIRALM  361 (643)
T ss_dssp             EEEECHHHHHHHH
T ss_pred             EEEehHHHHHHHH
Confidence            9999998777654

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.29  E-value=1.2  Score=39.90  Aligned_cols=82  Identities=6%  Similarity=-0.067  Sum_probs=57.7

Q ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHhhhcCcEEeecCCC---CCHHHHHHHHHhcCCcE
Q 048729           41 YTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM--YELQFGVPMSGAILNNINTR---LDAHTLSVLLQHSESKL  115 (330)
Q Consensus        41 ~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~--~~~~la~~~~G~~~~~l~~~---~~~~~l~~~l~~~~~~~  115 (330)
                      +|.+-+.........  ...++.++|++...+|.+..+  ...+++++..|+..+..+..   .++..+.+++++.+++.
T Consensus       259 ~~h~~~~~~~~~~~~--~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~  336 (640)
T d1ry2a_         259 HSTAGYLLGALLTMR--YTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQ  336 (640)
T ss_dssp             ECSHHHHHHHHHHHH--HHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSE
T ss_pred             eccccHHHHHHHHHH--hhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccE
Confidence            566655433322222  246889999999999987544  45678889999877766532   35678999999999999


Q ss_pred             EEEcccchH
Q 048729          116 VFVDHLHTY  124 (330)
Q Consensus       116 i~~~~~~~~  124 (330)
                      +.+.|..+.
T Consensus       337 ~~~~P~~~~  345 (640)
T d1ry2a_         337 FYVAPTALR  345 (640)
T ss_dssp             EEECHHHHH
T ss_pred             EEcChHHHH
Confidence            988764443

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=81.67  E-value=4.9  Score=34.33  Aligned_cols=95  Identities=7%  Similarity=0.023  Sum_probs=65.2

Q ss_pred             cCCCcEEE-eCCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH--H-HHHHhhhcCcEEeec
Q 048729           28 YTDCPSLV-YNNT--------TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY--E-LQFGVPMSGAILNNI   95 (330)
Q Consensus        28 ~p~~~a~~-~~~~--------~~T~~el~~~~~~~a~~L~~~g~~~gd~V~~~~~~~~~~~--~-~~la~~~~G~~~~~l   95 (330)
                      .++.+|++ ++++        .+|.+.+...+......   .++.++|+++...+....+.  . ..+.++..|...+ .
T Consensus       180 ~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~-~  255 (536)
T d1mdba_         180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV-L  255 (536)
T ss_dssp             CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE-E
T ss_pred             CccchHHhhhcccccccceecccccccccccccccccc---cccccccccccccccccccceeecccccccccccccc-c
Confidence            45666665 3332        28888887766655544   47889999999999875543  2 3344444456554 4


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEcccchHHH
Q 048729           96 NTRLDAHTLSVLLQHSESKLVFVDHLHTYLL  126 (330)
Q Consensus        96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~  126 (330)
                      .+...+..+...+.+.+++.+...+.....+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (536)
T d1mdba_         256 SPSPSPDDAFPLIEREKVTITALVPPLAMVW  286 (536)
T ss_dssp             CSSSSHHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred             cCCCCHHHHHHHHhhhccccccccchhhhhh
Confidence            5567888999999999999998887665543