Citrus Sinensis ID: 048731

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900----
MLRRIKPPILLLLVLLCFLTLSCSADPVKKCNKTSPYTGREYELSMVQHQLRGVVSVIDDCSFRVSQFEMLSGSDVHWWGANATDFDNITSGFIVSDHSLNETYKNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNGSDSGITLSSGLAPSPTPSSTRVLGAPTMFDNCKVLSKEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLPFVDDFYITKYSECVNKDGSYSGVCPDAIYEGSDSGGLVNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQVVWALGLLKPPDTLTPYYLPQNHGEPESVTYGHLVLNVSEHVNDCLGPLDAEDKEDQDLIIADANVPLVVVTGEALHYPNPPNPVKVFYINKKEAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQKMGWRIQVVDGGLSDMYNNSVVLDDQQVTFFWTLSKDKESISFAARGEKKSGYLAIGFGSGMVNSYAYVGWIDDIGKGHVNTYWIDSMDASGVHPTVENMTYVRCKSENGFITLEFTRPLKPSCNHSHRNSPKCKNIIDPTTPLKVIWAMGSSWTDGHLTERNMHFVKSQRPVRVLLLRGSAEAEQDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLIVALIVVYLEFREKQRRRERIFGRSNWVLGNLEEDDSTDLLSPTRDHAEKSLQRGMMEVQLEPLNR
ccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEEccEEEEccccccccccEEEEEEcccccccccccEEcccccccccccccEEEEEccccccEEcccEEEEEEccccccccEEEEcccccccccccccccccccccccccccccccccEEEcccccEEEEEEEccccEEEEEEEEEEccccEEEEEEccccccccccccccEEEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEccEEEEEEEcccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccEEEEccEEccEEEEEEccEEEEEEEccccccEEEccccccccccccccccEEEccccccccccccccEEEEcccccccccEEEEcccccccccEEEEEEcccccccccccccccccEEEEEEEEccccEEEEEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEEEEcccccccccccccccEEEEEcccccEEEEEEEEEccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEcccc
cccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHccccccEEEEEEcccEEEEccccccccccEEEEEEcccccccccccEEEccccccccccccEEEEEcccccEEEEccEEEEEEccccccccEEEEcccccccccccccccccccccccccccccccccHHHcccccEEEEEEEccccEEEEEEEEEEccccEEEEEEccccccccccccccEEEEEEEcccccEEEEEEEccccccccccccccccccccEccccccccccccEEEEEEEEcccEEEEEEEEcccccccccccccccccccEEEEEEccccccccccccccccccccccccccccEEEccccccccccccccccccccccEEEEEEEEcccccccccccccccccccEEEEEccccccEEEEEEcEEEEEEEEccccccEEEEccccccccccccccEEEEEccccccccccccEEEEEEcccccccEEEEEEcccccccEEEEEEccccHHHHHHHcccccccEEEEEEEcccccEEEEEEEccccccEEEEEEcccccccEEEEEEEcccccEEEEEEEEcccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEEEcccccccEEEEEEccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccccccccccEcccccccccccccccccEEEEEccccc
mlrrikppILLLLVLLCFLTlscsadpvkkcnktspytgreYELSMVQHQLRGVVSVIDDCSFRVSQFEMlsgsdvhwwganatdfdnitsgfivsdhslnetyknATFTVLLLENitweqipvlsiwdsftasdfghmvlngsdsgitlssglapsptpsstrvlgaptmfdnckVLSKEFRIRWTLYADENSIEIGLEaatgtqnymafgwanpnatsgfmlgadvamtgfkqeglpfvddfyitkysecvnkdgsysgvcpdaiyegsdsgglvnntrlvyghrrdgvsfirykrplvssdkkydfsvNYTENMQVVWALgllkppdtltpyylpqnhgepesvtyGHLVLNVSEhvndclgpldaedkedqdliiadanvpLVVVTGealhypnppnpvkvfyinkkeapvlrvergvpvkfsiqaGHDVALYITSdilggnaslrNVTETiyaggpeaegvkaspmelvwapdrntpdevyYQSLydqkmgwriqvvdgglsdmynnsvvlddqQVTFFWTLSKDKESISFAArgekksgylAIGFGSGMVNSYAYVGWiddigkghvntywidsmdasgvhptvenmtyvrcksengfitleftrplkpscnhshrnspkckniidpttpLKVIWAMgsswtdghlternmhfvksqrPVRVLLLRGsaeaeqdlRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGFYVSSLHVKFGITATVLACVQplnafvrpkkpangeeissKRLIWEYLHFIVGRFAIIAGIVALFTGMKHlgerygsenvHGLIWALIVWFLIVALIVVYLEFREKQRRRERIfgrsnwvlgnleeddstdllsptrDHAEKSLQRGMMEVQLEPLNR
MLRRIKPPILLLLVLLCFLTLscsadpvkkcnktspytGREYELSMVQHQLRGVVSVIDDCSFRVSQFEMLSGSDVHWWGANATDFDNITSGFIVSDHSLNETYKNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNGSDSGITLSSGLAPSPTPSSTRVLGAPTMFDNCKVLSKEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLPFVDDFYITKYSECVNKDGSYSGVCPDAIYEGSDSGGLVNNTRLvyghrrdgvsfirykrplvssdkkydfsvNYTENMQVVWALGLLKPPDTLTPYYLPQNHGEPESVTYGHLVLNVSEHVNDCLGPLDAEDKEDQDLIIADANVPLVVVTGEALHYPNPPNPVKVFYINKKEAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGgpeaegvkaspMELVWAPDRNTPDEVYYQSLYDQKMGWRIQVVDGGLSDMYNNSVVLDDQQVTFFWTLSKDKESISFAARGEKKSGYLAIGFGSGMVNSYAYVGWIDDIGKGHVNTYWIDSMDASGVHPTVENMTYVRCKSENGFITLEFTRPLKpscnhshrnspkckniidpTTPLKVIWAMGSSWTDGHLTERNMHFVKSQRPVRVLLLRGSAEAEQDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGFYVSSLHVKFGITATVLACVQPLNafvrpkkpangeeisskRLIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLIVALIVVYLEFrekqrrrerifgrsnwvlgnleeddstdllspTRDHAEkslqrgmmevqleplnr
MLRRIKPPIllllvllcfltlSCSADPVKKCNKTSPYTGREYELSMVQHQLRGVVSVIDDCSFRVSQFEMLSGSDVHWWGANATDFDNITSGFIVSDHSLNETYKNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNGSDSGITLSSGLAPSPTPSSTRVLGAPTMFDNCKVLSKEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLPFVDDFYITKYSECVNKDGSYSGVCPDAIYEGSDSGGLVNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQVVWALGLLKPPDTLTPYYLPQNHGEPESVTYGHLVLNVSEHVNDCLGPLDAEDKEDQDLIIADANVPLVVVTGEALHYPNPPNPVKVFYINKKEAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQKMGWRIQVVDGGLSDMYNNSVVLDDQQVTFFWTLSKDKESISFAARGEKKSGYLAIGFGSGMVNSYAYVGWIDDIGKGHVNTYWIDSMDASGVHPTVENMTYVRCKSENGFITLEFTRPLKPSCNHSHRNSPKCKNIIDPTTPLKVIWAMGSSWTDGHLTERNMHFVKSQRPVRVLLLRGSAEAEQDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGlaivllallfavaelRGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLIVALIVVYLEFREKQRRRERIFGRSNWVLGNLEEDDSTDLLSPTRDHAEKSLQRGMMEVQLEPLNR
******PPILLLLVLLCFLTLSCSADPVKKCNKTSPYTGREYELSMVQHQLRGVVSVIDDCSFRVSQFEMLSGSDVHWWGANATDFDNITSGFIVSDHSLNETYKNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNG*********************VLGAPTMFDNCKVLSKEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLPFVDDFYITKYSECVNKDGSYSGVCPDAIYEGSDSGGLVNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQVVWALGLLKPPDTLTPYYLPQNHGEPESVTYGHLVLNVSEHVNDCLGPLDAEDKEDQDLIIADANVPLVVVTGEALHYPNPPNPVKVFYINKKEAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQKMGWRIQVVDGGLSDMYNNSVVLDDQQVTFFWTLSKDKESISFAARGEKKSGYLAIGFGSGMVNSYAYVGWIDDIGKGHVNTYWIDSMDASGVHPTVENMTYVRCKSENGFITLEFTRPLK***********KCKNIIDPTTPLKVIWAMGSSWTDGHLTERNMHFVKSQRPVRVLLLRGSAEAEQDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGFYVSSLHVKFGITATVLACVQPLNAFVRP********ISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLIVALIVVYLEFREKQRRRERIFGRSNWVLGN***********************************
********ILLLLVLLCFLTLSCSADPVKKCNK**PYTGREYELSMVQHQLRGVVSVIDDCSFRVSQFEMLSGSDVHWWGANATDFD***************TYKNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNGS******************************CKVLSKEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPN****FMLGADVAMTGFKQEGLPFVDDFYITKYSECVNKDGSYSGVCPDAIYE***SGGLVNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQVVWALGLLKPPDTLTPYYLPQNHGEPESVTYGHLVLNVSEHVNDCLGPLDAEDKEDQDLIIADANVPLVVVTGEALHYPNPPNPVKVFYINKKEAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQKMGWRIQVVDGGLSDMYNNSVVLDDQQVTFFWTLSKDKESISFAARGEKKSGYLAIGFGSGMVNSYAYVGWIDDIGKGHVN********************YVRCKSENGFITLEFTRPLKPSCNHSHRNSPKCKNIIDPTTPLKVIWAMGSSWTDGHLTERNMHFVKSQRPVRVLLLRGSAEAEQDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLIVALIVVYLEFR***********************************************QLE****
MLRRIKPPILLLLVLLCFLTLSCSADPVKKCNKTSPYTGREYELSMVQHQLRGVVSVIDDCSFRVSQFEMLSGSDVHWWGANATDFDNITSGFIVSDHSLNETYKNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNGSDSGITLSS***********RVLGAPTMFDNCKVLSKEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLPFVDDFYITKYSECVNKDGSYSGVCPDAIYEGSDSGGLVNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQVVWALGLLKPPDTLTPYYLPQNHGEPESVTYGHLVLNVSEHVNDCLGPLDAEDKEDQDLIIADANVPLVVVTGEALHYPNPPNPVKVFYINKKEAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQKMGWRIQVVDGGLSDMYNNSVVLDDQQVTFFWTLSKDKESISFAARGEKKSGYLAIGFGSGMVNSYAYVGWIDDIGKGHVNTYWIDSMDASGVHPTVENMTYVRCKSENGFITLEFTRPLKPS********PKCKNIIDPTTPLKVIWAMGSSWTDGHLTERNMHFVKSQRPVRVLLLRGSAEAEQDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLIVALIVVYLEFREKQRRRERIFGRSNWVLGNLEEDDSTDLLSPTRDHAEKSLQRGMMEVQLEPLNR
***RIKPPILLLLVLLCFLTLSCSADPVKKCNKTSPYTGREYELSMVQHQLRGVVSVIDDCSFRVSQFEMLSGSDVHWWGANATDFDNITSGFIVSDHSLNETYKNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNGSDSGITLSSGLAPSPTPSSTRVLGAPTMFDNCKVLSKEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLPFVDDFYITKYSECVNKDGSYSGVCPDAIYEGSDSGGLVNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQVVWALGLLKPPDTLTPYYLPQNHGEPESVTYGHLVLNVSEHVNDCLGPLDAEDKEDQDLIIADANVPLVVVTGEALHYPNPPNPVKVFYINKKEAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQKMGWRIQVVDGGLSDMYNNSVVLDDQQVTFFWTLSKDKESISFAARGEKKSGYLAIGFGSGMVNSYAYVGWIDDIGKGHVNTYWIDSMDASGVHPTVENMTYVRCKSENGFITLEFTRPLKPSCNHSHRNSPKCKNIIDPTTPLKVIWAMGSSWTDGHLTERNMHFVKSQRPVRVLLLRGSAEAEQDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLIVALIVVYLEFREKQRRRE************************************M*E********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLRRIKPPILLLLVLLCFLTLSCSADPVKKCNKTSPYTGREYELSMVQHQLRGVVSVIDDCSFRVSQFEMLSGSDVHWWGANATDFDNITSGFIVSDHSLNETYKNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNGSDSGITLSSGLAPSPTPSSTRVLGAPTMFDNCKVLSKEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLPFVDDFYITKYSECVNKDGSYSGVCPDAIYEGSDSGGLVNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQVVWALGLLKPPDTLTPYYLPQNHGEPESVTYGHLVLNVSEHVNDCLGPLDAEDKEDQDLIIADANVPLVVVTGEALHYPNPPNPVKVFYINKKEAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQKMGWRIQVVDGGLSDMYNNSVVLDDQQVTFFWTLSKDKESISFAARGEKKSGYLAIGFGSGMVNSYAYVGWIDDIGKGHVNTYWIDSMDASGVHPTVENMTYVRCKSENGFITLEFTRPLKPSCNHSHRNSPKCKNIIDPTTPLKVIWAMGSSWTDGHLTERNMHFVKSQRPVRVLLLRGSAEAEQDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGLAIVLLALLFAVAELRGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLIVALIVVYLEFREKQRRRERIFGRSNWVLGNLEEDDSTDLLSPTRDHAEKSLQRGMMEVQLEPLNR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query904 2.2.26 [Sep-21-2011]
Q9GPJ1 1503 Protein Skeletor, isoform no no 0.274 0.165 0.273 1e-13
Q9VGY6784 Protein Skeletor, isoform no no 0.233 0.269 0.288 3e-13
Q8K385592 Ferric-chelate reductase yes no 0.341 0.521 0.226 1e-11
Q6INU7590 Putative ferric-chelate r N/A no 0.295 0.452 0.244 8e-10
Q6ZNA5592 Ferric-chelate reductase yes no 0.289 0.442 0.241 4e-09
A4QP81573 Putative ferric-chelate r no no 0.296 0.467 0.261 1e-06
Q8MSU3647 Putative ferric-chelate r no no 0.176 0.247 0.270 1e-05
A2VE04591 Ferric-chelate reductase yes no 0.303 0.463 0.244 5e-05
>sp|Q9GPJ1|SKEL2_DROME Protein Skeletor, isoforms D/E OS=Drosophila melanogaster GN=Skeletor PE=1 SV=3 Back     alignment and function desciption
 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 125/293 (42%), Gaps = 45/293 (15%)

Query: 51  LRGV-------VSVIDDCSFRVSQFEML-SGSDVHWWGANATDFDNITSGFIVSDHSLNE 102
           LRGV       + ++D  +  V  F       D  +W          + G  + D +  E
Sbjct: 157 LRGVHGVSSDNIVIVDAQTLLVPNFSYDGEAPDAKFWVGRGQR--PTSDGLRIPDENGKE 214

Query: 103 T----YKNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNGSDSGITLSSGLAPSP 158
                Y+  T  + L E++T   I    +W      DFGH         + L  GL    
Sbjct: 215 NPLRRYERKTIVLTLPEDLTIFDIGHFGVWCEAFTVDFGH---------VRLPEGLN--- 262

Query: 159 TPSSTRVLG-APTMFDNCKVLSKE--FRIRWTLYADENSIEIGLEAATGTQNYMAFGWAN 215
            P S ++LG +P    NC+VL  +  F +RW +  +  SI + L A     +YM+FG + 
Sbjct: 263 VPPSLKMLGISPQSKLNCEVLYDDLAFEVRWAVAGE--SIVVQLVAKLEPNHYMSFGIS- 319

Query: 216 PNATSGFMLGADVAMTGF-KQEGLPFVDDFYITKYSECVNKDGSYSGVCPDA-IYEGSDS 273
           PN     M+GAD  +     Q G  F  D+++   ++C        G CPD  I E +  
Sbjct: 320 PNKNISQMIGADAVVAWVDPQTGNGFATDYFLEGKAQCSGG----RGACPDTKISEKT-- 373

Query: 274 GGLVNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQVVWALGLL 326
               N+ RL+     +G S + Y+R L ++D + D  ++ T    VVWA+G L
Sbjct: 374 ----NSIRLLNAAMVNGYSIVTYQRSLAATD-RLDLPISITGAESVVWAIGPL 421
Provides structural support to stabilize and organize the microtubule spindle during mitosis (within embryonic somatic cells) and meiosis (within spermatocytes). The role in mitosis regulation depends on the Ran pathway.
Drosophila melanogaster (taxid: 7227)
>sp|Q9VGY6|SKEL1_DROME Protein Skeletor, isoforms B/C OS=Drosophila melanogaster GN=Skeletor PE=1 SV=2 Back     alignment and function description
>sp|Q8K385|FRRS1_MOUSE Ferric-chelate reductase 1 OS=Mus musculus GN=FRRS1 PE=1 SV=1 Back     alignment and function description
>sp|Q6INU7|FRRS1_XENLA Putative ferric-chelate reductase 1 OS=Xenopus laevis GN=frrs1 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZNA5|FRRS1_HUMAN Ferric-chelate reductase 1 OS=Homo sapiens GN=FRRS1 PE=2 SV=2 Back     alignment and function description
>sp|A4QP81|FRRS1_DANRE Putative ferric-chelate reductase 1 OS=Danio rerio GN=frrs1 PE=2 SV=1 Back     alignment and function description
>sp|Q8MSU3|FRRS1_DROME Putative ferric-chelate reductase 1 homolog OS=Drosophila melanogaster GN=CG8399 PE=2 SV=1 Back     alignment and function description
>sp|A2VE04|FRRS1_BOVIN Ferric-chelate reductase 1 OS=Bos taurus GN=FRRS1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query904
225430356906 PREDICTED: uncharacterized protein LOC10 0.983 0.981 0.734 0.0
1478645871004 hypothetical protein VITISV_031502 [Viti 0.983 0.885 0.733 0.0
224143285900 predicted protein [Populus trichocarpa] 0.957 0.962 0.741 0.0
224092570910 predicted protein [Populus trichocarpa] 0.966 0.960 0.733 0.0
357447217928 hypothetical protein MTR_2g018960 [Medic 0.963 0.938 0.720 0.0
356511047878 PREDICTED: uncharacterized protein LOC10 0.946 0.974 0.712 0.0
356528426880 PREDICTED: uncharacterized protein LOC10 0.970 0.996 0.696 0.0
356511049878 PREDICTED: uncharacterized protein LOC10 0.946 0.974 0.711 0.0
449455695898 PREDICTED: uncharacterized protein LOC10 0.980 0.986 0.688 0.0
449521864898 PREDICTED: uncharacterized protein LOC10 0.980 0.986 0.687 0.0
>gi|225430356|ref|XP_002285293.1| PREDICTED: uncharacterized protein LOC100261073 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1369 bits (3543), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/907 (73%), Positives = 759/907 (83%), Gaps = 18/907 (1%)

Query: 9   ILLLLVLLCFLTLSCSADPVKKCNKTSPYTGREYELSMVQHQLRGVVSVIDDCSFRVSQF 68
            L+ L  L  L L C ADP   C+KTSP    E ++ MVQHQLRG++ V+DDCSFRVS+F
Sbjct: 7   FLVFLGFLFTLILHCHADPGSGCSKTSPLLHFESDIEMVQHQLRGLIKVLDDCSFRVSEF 66

Query: 69  EMLSGSDVHWWGANATDFDNITSGFIVSDHSLNETYKNATFTVLLLENITWEQIPVLSIW 128
           +ML GSDVHWWGA   DF N+TSGF+++D  LN+TYKN +F V L  N+TW++I VL++W
Sbjct: 67  DMLPGSDVHWWGAAGPDFANLTSGFVIADDKLNKTYKNESFVVRLRSNLTWDRIGVLAVW 126

Query: 129 DSFTASDFGHMVLNGSDSG---ITLSSGLAPSPT--PSST----RVLGAPTMFDNCKVLS 179
           D  TASDFGH+V+    +G   I +S  LAPSP   P+S+    R  G PTMF+NCKVLS
Sbjct: 127 DIPTASDFGHVVMGDPRNGSGNIAVSPDLAPSPAMEPNSSTVRNRTGGVPTMFENCKVLS 186

Query: 180 KEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLP 239
             +R+RWTL ADE+SI+IGLEAATG+ NYMAFGWA+P +T   MLGADVA+ GF ++GLP
Sbjct: 187 PNYRVRWTLSADEDSIDIGLEAATGSMNYMAFGWADPKSTYSPMLGADVAVAGFTEDGLP 246

Query: 240 FVDDFYITKYSEC-VNKDGSYSGVCPDAIYEGSDSGGLVNNTRLVYGHRRDGVSFIRYKR 298
           F DD+YITKY+EC +NK+G   GVCPD +YEGSD  GLVNNTRLVYGHR+DGVSF+RY+R
Sbjct: 247 FSDDYYITKYNECMINKNGLVQGVCPDTMYEGSDPDGLVNNTRLVYGHRKDGVSFVRYRR 306

Query: 299 PLVSSDKKYDFSVNYTENMQVVWALGLLKPPDTLTPYYLPQNHGEPESVTYGHLVLNVSE 358
           PL S DKKYD  VN+T NM V+WALGL++PPDTL PYYLPQNHG P  VTYGHLVLNVSE
Sbjct: 307 PLKSVDKKYDLPVNHTGNMTVIWALGLIRPPDTLRPYYLPQNHGGPMLVTYGHLVLNVSE 366

Query: 359 HVNDCLGPLDAEDKEDQDLIIADANVPLVVVTGEALHYPNPPNPVKVFYINKKEAPVLRV 418
           HVNDCLGPLDAEDKEDQDLIIADANVPLVVVT  ALHYPNPPNP KV YINKKEAP LRV
Sbjct: 367 HVNDCLGPLDAEDKEDQDLIIADANVPLVVVTSPALHYPNPPNPSKVLYINKKEAPFLRV 426

Query: 419 ERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPD 478
           ERGVPVKFSIQAGHDVALYITSD LGGNA+LRNV+ET+YAGG  A+GV ASPMELVWAPD
Sbjct: 427 ERGVPVKFSIQAGHDVALYITSDPLGGNATLRNVSETVYAGGANAQGVLASPMELVWAPD 486

Query: 479 RNTPDEVYYQSLYDQKMGWRIQVVDGGLSDMYNNSVVLDDQQVTFFWTLSKDKESISFAA 538
           RNTPD+VYYQSLY QKMGW+IQVVDGGLSDMYNNSV+LDDQQVT FWTLS+D  SIS AA
Sbjct: 487 RNTPDQVYYQSLYTQKMGWKIQVVDGGLSDMYNNSVLLDDQQVTLFWTLSED--SISIAA 544

Query: 539 RGEKKSGYLAIGFGSGMVNSYAYVGWID-DIGKGHVNTYWIDSMDASGVHPTVENMTYVR 597
           RGEKKSGYLAIGFGSGMVNSYAYVGWID DIG+  VNTYWID  DAS VHPT EN+++VR
Sbjct: 545 RGEKKSGYLAIGFGSGMVNSYAYVGWIDNDIGR--VNTYWIDGKDASSVHPTNENLSHVR 602

Query: 598 CKSENGFITLEFTRPLKPSCNHSHRNSPKCKNIIDPTTPLKVIWAMGSSWTDGHLTERNM 657
           CKSENG IT EFTRPLKP C+ + R   +C NI+DPTTPLKV+WAMG+ W+  HL+ERNM
Sbjct: 603 CKSENGMITFEFTRPLKPPCSRAERR--ECNNIVDPTTPLKVVWAMGAKWSGDHLSERNM 660

Query: 658 HFVKSQRPVRVLLLRGSAEAEQDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDG 717
           H   S RPVRVLL+RGSAEAEQDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDG
Sbjct: 661 HSATSSRPVRVLLMRGSAEAEQDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDG 720

Query: 718 WYQIHVYLQYSGLAIVLLALLFAVAELRGFYVSSLHVKFGITATVLACVQPLNAFVRPKK 777
           W+QIHVYLQYSGLAIVLL  LFAVAELRGFY SSLHVKFGITA  LACVQP+NA +RPK+
Sbjct: 721 WFQIHVYLQYSGLAIVLLGFLFAVAELRGFYFSSLHVKFGITAIFLACVQPVNASLRPKR 780

Query: 778 PANGEEISSKRLIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWF 837
            ANGE +SSKRL WEYLH IVGR AI+AGI AL +GMKHLG+RYG ENV GL WALI+WF
Sbjct: 781 SANGETVSSKRLAWEYLHVIVGRCAIVAGIAALISGMKHLGDRYGGENVEGLNWALIIWF 840

Query: 838 LIVALIVVYLEFREKQRRRERIFGRSNWVLGNLEEDDSTDLLSPTRDHAEKSLQRGMMEV 897
           L+ AL VVYLE+REK+R ++R   RS+WVLGN+EEDDSTDLLSP R+  ++S    ++EV
Sbjct: 841 LLGALTVVYLEYREKKREKDRNSERSSWVLGNMEEDDSTDLLSP-RNAEKESHPSEILEV 899

Query: 898 QLEPLNR 904
           QL+PL+R
Sbjct: 900 QLQPLSR 906

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147864587|emb|CAN79804.1| hypothetical protein VITISV_031502 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224143285|ref|XP_002324904.1| predicted protein [Populus trichocarpa] gi|222866338|gb|EEF03469.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224092570|ref|XP_002309666.1| predicted protein [Populus trichocarpa] gi|222855642|gb|EEE93189.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357447217|ref|XP_003593884.1| hypothetical protein MTR_2g018960 [Medicago truncatula] gi|355482932|gb|AES64135.1| hypothetical protein MTR_2g018960 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356511047|ref|XP_003524243.1| PREDICTED: uncharacterized protein LOC100785641 [Glycine max] Back     alignment and taxonomy information
>gi|356528426|ref|XP_003532804.1| PREDICTED: uncharacterized protein LOC100816185 [Glycine max] Back     alignment and taxonomy information
>gi|356511049|ref|XP_003524244.1| PREDICTED: uncharacterized protein LOC100786162 [Glycine max] Back     alignment and taxonomy information
>gi|449455695|ref|XP_004145587.1| PREDICTED: uncharacterized protein LOC101214263 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449521864|ref|XP_004167949.1| PREDICTED: uncharacterized protein LOC101224130 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query904
TAIR|locus:2160220907 AT5G54830 "AT5G54830" [Arabido 0.962 0.959 0.652 0.0
FB|FBgn0001321689 knk "knickkopf" [Drosophila me 0.356 0.467 0.274 1.4e-23
FB|FBgn0262717 1503 Skeletor "Skeletor" [Drosophil 0.217 0.131 0.315 6.7e-18
TAIR|locus:2076770398 AT3G61750 [Arabidopsis thalian 0.167 0.379 0.287 5.2e-12
TAIR|locus:2077690466 AT3G59070 [Arabidopsis thalian 0.375 0.727 0.240 2.7e-11
TAIR|locus:2091097369 AT3G07570 [Arabidopsis thalian 0.167 0.409 0.295 1e-10
TAIR|locus:2130789402 AT4G17280 [Arabidopsis thalian 0.243 0.547 0.283 5.1e-10
TAIR|locus:2049254404 AT2G04850 [Arabidopsis thalian 0.146 0.326 0.281 1.8e-07
TAIR|locus:2168948395 AT5G47530 [Arabidopsis thalian 0.163 0.374 0.300 2.2e-07
MGI|MGI:108076592 Frrs1 "ferric-chelate reductas 0.338 0.516 0.224 2.7e-07
TAIR|locus:2160220 AT5G54830 "AT5G54830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3117 (1102.3 bits), Expect = 0., P = 0.
 Identities = 578/886 (65%), Positives = 696/886 (78%)

Query:    29 KKCNKTSPYTGREYELSMVQHQLRGVVSVIDDCSFRVSQFEMLSGSDVHWWGANATDFDN 88
             ++C+ +S   G E E  M+QHQLRGV +V+DDCSFRVS+F+MLSGS+VHWWGA ++DFDN
Sbjct:    25 EECSNSSSLIGHESEFKMLQHQLRGVFTVVDDCSFRVSRFDMLSGSEVHWWGAMSSDFDN 84

Query:    89 ITS-GFIVSDHSLNETYKNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNGSDSG 147
             +T+ GF++SD  LN+T+KN++F V LL N+TW+++ V+S+WD  TASDFGH++L+ +   
Sbjct:    85 MTNDGFVISDQKLNQTFKNSSFIVRLLGNVTWDKLGVVSVWDLPTASDFGHVLLSNATES 144

Query:   148 ITLSSGLAPSPT----P---SSTRVLGAPTMFDNCKVLSKEFRIRWTLYADENSIEIGLE 200
              T  +   PS +    P   +++    APTMFDNCK LS ++R+RW+L A++  ++IGLE
Sbjct:   145 DTSKAESPPSESNDVAPGKSNNSEPFKAPTMFDNCKKLSDKYRLRWSLNAEKGYVDIGLE 204

Query:   201 AATGTQNYMAFGWANPNATSGFMLGADVAMTGFKQEGLPFVDDFYITKYSECVNKDGSYS 260
             A TG  NYMAFGWA PN+TS  ML ADV +TG +++G PF DDFYIT+ S C  K+G+ +
Sbjct:   205 ATTGLLNYMAFGWAKPNSTSNLMLNADVVVTGIREDGFPFADDFYITESSVCSVKEGTAT 264

Query:   261 GVCPDAIYEGSDS-GGLVNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYDFSVNYTENMQV 319
             GVCPD +YE +DS G  VNNT+LVYGHR DGVSF+RY+RPL  SD K+DF VN TE++ V
Sbjct:   265 GVCPDTVYEEADSVGSSVNNTKLVYGHRIDGVSFVRYRRPLNDSDNKFDFPVNSTESLTV 324

Query:   320 VWALGLLKPPDTLTPYYLPQNHGEPESVTYGHLVLNVSEHVNDCLGPLDAEDKEDQDLII 379
             +WALG++KPPD + PYYLP NHG  ES  +GH  LN+S+HV++CLGPLDA++K DQD+II
Sbjct:   325 IWALGVIKPPDVINPYYLPVNHGGVESENFGHFSLNLSDHVDECLGPLDADNKYDQDVII 384

Query:   380 ADANVPLVVVTGEALHYPNPPNPVKVFYINKKEAPVLRVERGVPVKFSIQAGHDVALYIT 439
             ADA+ PLVV  G ++HYPNPPNP KV YINKKEAPVL+VERGVPVKFSI+AGHDV+ YIT
Sbjct:   385 ADAHAPLVVTAGPSVHYPNPPNPSKVLYINKKEAPVLKVERGVPVKFSIEAGHDVSFYIT 444

Query:   440 SDILGGNASLRNVTETIYAGGPEAEGVKASPMELVWAPDRNTPDEVYYQSLYDQKMGWRI 499
             SD LGGNASLRN TETIYAGG E  GV +SP ELVWAP+RNTPD++YY S++ +KMGW++
Sbjct:   445 SDFLGGNASLRNRTETIYAGGQETHGVLSSPSELVWAPNRNTPDQLYYHSIFQEKMGWKV 504

Query:   500 QVVDGGLSDMYNNSVVLDDQQVTFFWTLSKDKESISFAARGEKKSGYLAIGFGSGMVNSY 559
             QVVDGGLSDMYNNSV LDDQQV FFWT+  D  SIS AARGEKKSGYLAIGFGS M NSY
Sbjct:   505 QVVDGGLSDMYNNSVNLDDQQVKFFWTIVGD--SISIAARGEKKSGYLAIGFGSEMTNSY 562

Query:   560 AYVGWIDDIGKGHVNTYWIDSMDASGVHPTVENMTYVRCKSENGFITLEFTRPLKPSCNH 619
             AY+GW D  G GHVNTYWID   AS VHPT ENMTYVRCKSE G ITLEFTRPLKPSC  
Sbjct:   563 AYIGWFDRNGTGHVNTYWIDGESASAVHPTTENMTYVRCKSEEGIITLEFTRPLKPSC-- 620

Query:   620 SHRNSPKCKNIIDPTTPLKVIWAMGSSWTDGHLTERNMHFVKSQRPVRVLLLRGSAEAEQ 679
             SHR+ P+CKN+IDPTTPLKVIWAMG+ WTDG LTERNMH V SQRPVRV+L RGSAEA+Q
Sbjct:   621 SHRDRPECKNMIDPTTPLKVIWAMGAKWTDGQLTERNMHSVTSQRPVRVMLTRGSAEADQ 680

Query:   680 DLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGXXXXXXXXXX 739
             DLRPVL VHGFMMFLAWGILLPGGIL+ARYLKH+KGDGW++IH+YLQ SG          
Sbjct:   681 DLRPVLGVHGFMMFLAWGILLPGGILSARYLKHIKGDGWFKIHMYLQCSGLAIVFLGLLF 740

Query:   740 XXXXXRGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKRLIWEYLHFIVG 799
                   GF  SS HVKFG TA VLAC QP+NA++RP KPA GE ISSKRLIWEY H IVG
Sbjct:   741 AVAELNGFSFSSTHVKFGFTAIVLACAQPVNAWLRPAKPAQGELISSKRLIWEYSHSIVG 800

Query:   800 RFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLIVALIVVYLEFREKQRRRERI 859
             + A++ G+VALFTGMKHLGER G+ENV GL  AL +W  +  + V YLE+RE+ RRR R 
Sbjct:   801 QSAVVVGVVALFTGMKHLGERNGTENVDGLNLALGLWVFLCVVTVAYLEYRERGRRRARN 860

Query:   860 FGRSNWVLGNLEEDDSTDLLSPT---RDHAEKSLQRGMMEVQLEPL 902
               R NWVLGN+EEDDS DL+      RD  ++    G ME+QLEPL
Sbjct:   861 LSRGNWVLGNVEEDDSIDLIDSRGGFRDKDDEDRNGGRMEIQLEPL 906
GO:0004497 "monooxygenase activity" evidence=ISS
GO:0008152 "metabolic process" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005768 "endosome" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
FB|FBgn0001321 knk "knickkopf" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0262717 Skeletor "Skeletor" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2076770 AT3G61750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077690 AT3G59070 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091097 AT3G07570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130789 AT4G17280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049254 AT2G04850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168948 AT5G47530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:108076 Frrs1 "ferric-chelate reductase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query904
cd08760191 cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrom 4e-41
smart00665129 smart00665, B561, Cytochrome b-561 / ferric reduct 7e-33
smart00664148 smart00664, DoH, Possible catecholamine-binding do 6e-23
pfam03351124 pfam03351, DOMON, DOMON domain 7e-23
smart00686108 smart00686, DM13, Domain present in fly proteins ( 4e-21
cd09631138 cd09631, DOMON_DOH, DOMON-like domain of copper-de 5e-18
cd09631138 cd09631, DOMON_DOH, DOMON-like domain of copper-de 2e-16
smart00664148 smart00664, DoH, Possible catecholamine-binding do 9e-15
pfam03351124 pfam03351, DOMON, DOMON domain 1e-13
cd08761183 cd08761, Cyt_b561_CYB561D2_like, Eukaryotic cytoch 3e-09
pfam10517107 pfam10517, DM13, Electron transfer DM13 3e-08
cd08554131 cd08554, Cyt_b561, Eukaryotic cytochrome b(561) 3e-06
pfam10348105 pfam10348, DUF2427, Domain of unknown function (DU 0.001
pfam03188137 pfam03188, Cytochrom_B561, Eukaryotic cytochrome b 0.003
>gnl|CDD|176490 cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrome b(561), including the FRRS1 gene product Back     alignment and domain information 
 Score =  149 bits (377), Expect = 4e-41
 Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 13/181 (7%)

Query: 671 LRGSAEAEQDLRPVLAVHGFMMFLAWGILLPGGILAARYLKHVKGDGWYQIHVYLQYSGL 730
           L  +  +      ++  HG +M +AWGIL+P G L ARY        W+ +H  LQ   +
Sbjct: 22  LLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFLL-GDPVWFYLHAGLQLLAV 80

Query: 731 AIVL--LALLFAVAELRGFYVSSLHVKFGITATVLACVQPLNAFVRPKKPANGEEISSKR 788
            + +    L   + +  G  +++ H   GI    LA +QPL   +RP         S KR
Sbjct: 81  LLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPG------SKKR 134

Query: 789 LIWEYLHFIVGRFAIIAGIVALFTGMKHLGERYGSENVHGLIWALIVWFLIVALIVVYLE 848
            IW + H  +GR A+I  IV +F G+       G+        A  V   ++AL+ + LE
Sbjct: 135 SIWNWAHRWLGRAALILAIVNIFLGLDL----AGAGTPKAWKIAYGVVVAVLALVYLILE 190

Query: 849 F 849
            
Sbjct: 191 I 191

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. Length = 191
>gnl|CDD|214769 smart00665, B561, Cytochrome b-561 / ferric reductase transmembrane domain Back     alignment and domain information
>gnl|CDD|214768 smart00664, DoH, Possible catecholamine-binding domain present in a variety of eukaryotic proteins Back     alignment and domain information
>gnl|CDD|217508 pfam03351, DOMON, DOMON domain Back     alignment and domain information
>gnl|CDD|128929 smart00686, DM13, Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10 Back     alignment and domain information
>gnl|CDD|187689 cd09631, DOMON_DOH, DOMON-like domain of copper-dependent monooxygenases and related proteins Back     alignment and domain information
>gnl|CDD|187689 cd09631, DOMON_DOH, DOMON-like domain of copper-dependent monooxygenases and related proteins Back     alignment and domain information
>gnl|CDD|214768 smart00664, DoH, Possible catecholamine-binding domain present in a variety of eukaryotic proteins Back     alignment and domain information
>gnl|CDD|217508 pfam03351, DOMON, DOMON domain Back     alignment and domain information
>gnl|CDD|176491 cd08761, Cyt_b561_CYB561D2_like, Eukaryotic cytochrome b(561), including the CYB561D2 gene product Back     alignment and domain information
>gnl|CDD|220794 pfam10517, DM13, Electron transfer DM13 Back     alignment and domain information
>gnl|CDD|176489 cd08554, Cyt_b561, Eukaryotic cytochrome b(561) Back     alignment and domain information
>gnl|CDD|192545 pfam10348, DUF2427, Domain of unknown function (DUF2427) Back     alignment and domain information
>gnl|CDD|217413 pfam03188, Cytochrom_B561, Eukaryotic cytochrome b561 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 904
KOG4731512 consensus Protein predicted to be involved in spin 100.0
smart00686108 DM13 Domain present in fly proteins (CG14681, CG12 100.0
cd08760191 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), 99.93
KOG4293403 consensus Predicted membrane protein, contains DoH 99.87
PF03351124 DOMON: DOMON domain; InterPro: IPR005018 The DOMON 99.86
smart00664148 DoH Possible catecholamine-binding domain present 99.86
PF10517108 DM13: Electron transfer DM13; InterPro: IPR019545 99.85
smart00665129 B561 Cytochrome b-561 / ferric reductase transmemb 99.85
PF03188137 Cytochrom_B561: Eukaryotic cytochrome b561; InterP 99.81
KOG4731512 consensus Protein predicted to be involved in spin 99.79
cd08554131 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome 99.78
PF03351124 DOMON: DOMON domain; InterPro: IPR005018 The DOMON 99.77
cd08764214 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt 99.76
smart00664148 DoH Possible catecholamine-binding domain present 99.75
cd08761183 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561 99.73
PLN02351242 cytochromes b561 family protein 99.73
cd08766144 Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl 99.7
PLN02810231 carbon-monoxide oxygenase 99.69
PLN02680232 carbon-monoxide oxygenase 99.66
KOG1619245 consensus Cytochrome b [Energy production and conv 99.65
KOG3568603 consensus Dopamine beta-monooxygenase [Amino acid 99.65
cd08765153 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR 99.65
cd08762179 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB 99.64
cd08763143 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5 99.64
cd00241184 CDH_cytochrome Cellobiose dehydrogenase (Cellobios 99.29
PF10348105 DUF2427: Domain of unknown function (DUF2427); Int 98.93
KOG3568 603 consensus Dopamine beta-monooxygenase [Amino acid 98.6
PF04526101 DUF568: Protein of unknown function (DUF568); Inte 97.48
cd00241184 CDH_cytochrome Cellobiose dehydrogenase (Cellobios 96.66
cd08761183 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561 93.78
cd08554131 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome 93.61
cd08760191 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), 92.7
PF13301175 DUF4079: Protein of unknown function (DUF4079) 92.34
smart00665129 B561 Cytochrome b-561 / ferric reductase transmemb 92.06
KOG4293403 consensus Predicted membrane protein, contains DoH 91.71
cd08764214 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt 91.45
cd08766144 Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl 91.43
PF03188137 Cytochrom_B561: Eukaryotic cytochrome b561; InterP 90.95
cd08763143 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5 90.63
PF0012799 Copper-bind: Copper binding proteins, plastocyanin 90.02
PRK02710119 plastocyanin; Provisional 88.97
cd08762179 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB 88.65
TIGR03095148 rusti_cyanin rusticyanin. Rusticyanin is a blue co 88.52
PLN02680232 carbon-monoxide oxygenase 86.67
TIGR0265699 cyanin_plasto plastocyanin. Members of this family 86.2
PF10348105 DUF2427: Domain of unknown function (DUF2427); Int 83.94
TIGR0265783 amicyanin amicyanin. Members of this family are am 83.85
PLN02351242 cytochromes b561 family protein 82.46
PF00033188 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I 80.96
cd08765153 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR 80.16
>KOG4731 consensus Protein predicted to be involved in spindle matrix formation, contains DM13, DoH, and DOMON domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-72  Score=611.36  Aligned_cols=498  Identities=47%  Similarity=0.703  Sum_probs=431.1

Q ss_pred             CccCCCCeehhHHHHHHHhhccCCCCcccCCCCCCcee-eeccccccccceeeeEEEEeCceEEEcccccC-CCCceEEE
Q 048731            2 LRRIKPPILLLLVLLCFLTLSCSADPVKKCNKTSPYTG-REYELSMVQHQLRGVVSVIDDCSFRVSQFEML-SGSDVHWW   79 (904)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g-~~g~l~~~~h~v~g~v~i~d~~t~~i~~F~yd-~g~d~~fw   79 (904)
                      |.++.|+||+|++||+||.+.     +..-....||+| ++|||++++|||||.|++||+|||+|.||+|+ .+||+|||
T Consensus         1 mc~k~~~~l~l~~ll~f~icy-----a~~~~~aepy~G~~lGels~lehqVsG~Vf~Vns~t~qI~nF~~~~~~~d~~fw   75 (512)
T KOG4731|consen    1 MCDKLPNLLLLLVLLIFLICY-----ANGEEAAEPYYGVYLGELSSLEHQVSGDVFAVNSTTFQIVNFNYDGGPPDVFFW   75 (512)
T ss_pred             CccchhhHHHHHHHHHHHhhh-----cccccccccccceeeeeccccccccceeEEEEeeeEEEEEEeccCCCCCceEEE
Confidence            468899999999999999832     222222237888 99999999999999999999999999999999 67999999


Q ss_pred             eecCCCCCCCCCCeE-ecCC-----cccccccCcEEEEEcCCCCceeccCEEEEEccccccCceeEEeCCCCCCCCCcCC
Q 048731           80 GANATDFDNITSGFI-VSDH-----SLNETYKNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNGSDSGITLSSG  153 (904)
Q Consensus        80 ~g~~~~p~~~~~G~~-v~~~-----~l~~~y~~~~i~l~Lp~~~t~~di~~~svwc~~~~~~FG~V~ip~~~~~P~~~~~  153 (904)
                      +|.+.+|+  +.|.+ .++|     .++++|+|++++|+||+++||++|+|+||||.+++.|||||.||++++.|+++..
T Consensus        76 ~~~sn~ps--n~gi~~~~~e~G~t~~l~~~~~N~~~~v~lp~~~t~de~kw~sv~~l~ta~nfg~Vv~pee~d~P~~es~  153 (512)
T KOG4731|consen   76 GGMSNRPS--NEGIRHNDDEYGSTQSLNRTYKNKDFTVRLPENKTIDEIKWFSVWDLPTASNFGDVVIPEESDTPKAESP  153 (512)
T ss_pred             eccCCCCC--CccccccccccccccccceecccccEEEEcCCCceeeheeeEEEEEccCCCcccceeccCCCCCccccCC
Confidence            99999998  88844 4554     4689999999999999999999999999999999999999999999999977531


Q ss_pred             CCC-----CCCCCCcccCCCCcccccccccCccEEEEEeeecCCCeEEEEEEEEecCCCeEEEEecCCCCCCCCccCccE
Q 048731          154 LAP-----SPTPSSTRVLGAPTMFDNCKVLSKEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANPNATSGFMLGADV  228 (904)
Q Consensus       154 ~~~-----~~~~~~~~~~~~~~~~~nc~~L~~~~~l~W~v~~~~~~I~i~L~~~~~~~~y~afG~S~p~~~~~~M~gaDv  228 (904)
                      .+-     .-.+.+.-+-.++|++-+|..++.+++.+|-..+  ....+-.++-.....+|||++..++...-.|.++|.
T Consensus       154 ~~~s~~~~~v~SdnieviDarTlki~~Fsy~g~~~~~~y~~A--G~G~~~s~~s~kk~ai~~~~~~~~~~~sl~~~n~k~  231 (512)
T KOG4731|consen  154 PSFSNGVYGVSSDNIEVIDARTLKIPCFSYDGKYRPRWYFNA--GRGDIPSSASGKKLAIMAFDDEKGYETSLRMYNAKD  231 (512)
T ss_pred             cccccCccccccCCeeEeccceeeeccccccCccCCceEEec--cccCcccccccceeeeecccccccCCchhHhhccce
Confidence            111     0011222234789999999999999999999882  333344444444458999999987788899999999


Q ss_pred             EEEEEecCCceEEEEeeecCCcccccCCCCCCCcCCCccccCCCCCCcccceEEEEEEEeCCEEEEEEEecCCCCCCCCC
Q 048731          229 AMTGFKQEGLPFVDDFYITKYSECVNKDGSYSGVCPDAIYEGSDSGGLVNNTRLVYGHRRDGVSFIRYKRPLVSSDKKYD  308 (904)
Q Consensus       229 vV~~vd~~g~~~~~Dyy~~~~~~c~~~~g~~~g~cpD~~~~g~~~~g~~nd~~l~~g~~~~G~t~i~f~R~L~t~D~~~D  308 (904)
                      +|-..++++. ++.+.||+-+..|..++.+.-++|+|+-+.-.++.+..-+...+++++.+|+..+    +|+- |.+.|
T Consensus       232 Ivl~Lped~t-IfDI~wIsV~c~ky~~dfGhv~v~~d~n~e~~~~~v~si~~sk~~~~qi~~~~~v----~l~d-~~~r~  305 (512)
T KOG4731|consen  232 IVLELPEDGT-IFDIDWISVYCVKYVVDFGHVLVPPDLNVEPSPPYVPSINNSKVNGSQIDGVSQV----PLND-DNKRD  305 (512)
T ss_pred             EEEECCCCCc-EEeeceEEEEEEEEeeccceeecCCccccCcCCCccCcccccccccccccchhee----eccC-ccccc
Confidence            9999998766 8899999999999877777789999998876665544333444899999998877    6665 44467


Q ss_pred             eeecCCCcEEEEEEeCCCCCCCCCCCccccCCCCCCCccccceeEeeccCCCCcCCCCCCCCCccccceeeecccceeEE
Q 048731          309 FSVNYTENMQVVWALGLLKPPDTLTPYYLPQNHGEPESVTYGHLVLNVSEHVNDCLGPLDAEDKEDQDLIIADANVPLVV  388 (904)
Q Consensus       309 ~~i~~~~~~~vIwA~G~~~~~~~~~~~y~~~~h~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  388 (904)
                      .++.-.+...+||+.|-..++    ++|+|.+|+.....++++..+|++.++..|.+++++..+.++..++++...+..+
T Consensus       306 n~v~~~~~~~~i~nl~~~~~~----~~~~~v~~~~~~~e~~~~~~~n~~~~~~~~~p~l~~~~~~d~dv~~~~a~l~~~~  381 (512)
T KOG4731|consen  306 NPVNSTESLTVIWNLGVIKPP----PYYLPVNHGGVESENFGHFSLNLSDHVDECLPPLDADNKYDQDVIIADAHLPLVV  381 (512)
T ss_pred             ccceecCCceeeeccCcccCC----CcccccccCCceecccceeEEEccccccccCCccccccccCcceeeeccccCccc
Confidence            777777888999999887654    7899999998888899999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCCCCCCceeEEEcCccCceeEEEeCceEEEEEEecCCcceEEeecCCCCccccccceeeEecCCcCCCCCCC
Q 048731          389 VTGEALHYPNPPNPVKVFYINKKEAPVLRVERGVPVKFSIQAGHDVALYITSDILGGNASLRNVTETIYAGGPEAEGVKA  468 (904)
Q Consensus       389 ~~gp~~~y~~~p~~~~~wyiN~~~~p~~~~~rg~ty~f~v~~g~~~p~~it~~~~GG~~~~~~~~~~~~ag~~~~~g~~~  468 (904)
                      +.+|..||||||+++++||||++++|+++|+||.||+|.++||||+-+||++++.||.+.+++..+++|+|+-..+|+.+
T Consensus       382 ~~r~~~h~pn~~~s~~~~yin~~~~p~l~~~rg~ty~f~~~~g~dvhs~~~~~~l~~~~~l~~~~~~~~~~gq~~~~Vl~  461 (512)
T KOG4731|consen  382 TARPSVHYPNPPNSSKVLYINKKEAPVLKVERGVTYKFSIEAGHDVHSYITSDFLGGNASLRNRTETIYAGGQETHGVLS  461 (512)
T ss_pred             cccccccCCCCCCCCcceeeeeccChhhhhccCCcEEEeccCCCCcccccccCcccCccccccCccccccCCcceEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCCCCCceeeeeeeccccceEEEeecCCCCCcccCccccCC
Q 048731          469 SPMELVWAPDRNTPDEVYYQSLYDQKMGWRIQVVDGGLSDMYNNSVVLDD  518 (904)
Q Consensus       469 ~~~~~~~~~~~~~pd~~yy~~~~~~~~g~~i~vv~~g~sd~y~~c~~Ld~  518 (904)
                      .|-.+.|.|+..|||.+||++.+.++||||++++++++++||++.+.+++
T Consensus       462 ~pe~~~~~~~~pt~~~~~~~s~~~~~~~~kv~~~~~tl~~~~~~~vt~~~  511 (512)
T KOG4731|consen  462 SPEELVWAPNRPTPDQLYYHSIFQEKMGWKVQVVDGTLSDMYNNSVTLDD  511 (512)
T ss_pred             ChHHhhcCCCCCCcccchhhhhhhhhhCceeccccchHHHHHhhheeeec
Confidence            99999999999999999999999999999999999999999999887764

>smart00686 DM13 Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10 Back     alignment and domain information
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product Back     alignment and domain information
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms] Back     alignment and domain information
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals Back     alignment and domain information
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins Back     alignment and domain information
>PF10517 DM13: Electron transfer DM13; InterPro: IPR019545 This domain of unknown function is present in proteins of Drosophila melanogaster, Caenorhabditis elegans and Arabidopsis thaliana Back     alignment and domain information
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain Back     alignment and domain information
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein [] Back     alignment and domain information
>KOG4731 consensus Protein predicted to be involved in spindle matrix formation, contains DM13, DoH, and DOMON domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561) Back     alignment and domain information
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals Back     alignment and domain information
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561) Back     alignment and domain information
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins Back     alignment and domain information
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product Back     alignment and domain information
>PLN02351 cytochromes b561 family protein Back     alignment and domain information
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1 Back     alignment and domain information
>PLN02810 carbon-monoxide oxygenase Back     alignment and domain information
>PLN02680 carbon-monoxide oxygenase Back     alignment and domain information
>KOG1619 consensus Cytochrome b [Energy production and conversion] Back     alignment and domain information
>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism] Back     alignment and domain information
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product Back     alignment and domain information
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product Back     alignment and domain information
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product Back     alignment and domain information
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose Back     alignment and domain information
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi Back     alignment and domain information
>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism] Back     alignment and domain information
>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein Back     alignment and domain information
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose Back     alignment and domain information
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product Back     alignment and domain information
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561) Back     alignment and domain information
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product Back     alignment and domain information
>PF13301 DUF4079: Protein of unknown function (DUF4079) Back     alignment and domain information
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain Back     alignment and domain information
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms] Back     alignment and domain information
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561) Back     alignment and domain information
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1 Back     alignment and domain information
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein [] Back     alignment and domain information
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product Back     alignment and domain information
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>PRK02710 plastocyanin; Provisional Back     alignment and domain information
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product Back     alignment and domain information
>TIGR03095 rusti_cyanin rusticyanin Back     alignment and domain information
>PLN02680 carbon-monoxide oxygenase Back     alignment and domain information
>TIGR02656 cyanin_plasto plastocyanin Back     alignment and domain information
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi Back     alignment and domain information
>TIGR02657 amicyanin amicyanin Back     alignment and domain information
>PLN02351 cytochromes b561 family protein Back     alignment and domain information
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes Back     alignment and domain information
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query904
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.6 bits (107), Expect = 7e-05
 Identities = 87/670 (12%), Positives = 202/670 (30%), Gaps = 188/670 (28%)

Query: 41  EYELSMVQHQLRGVVSVIDDCSFRVSQFEMLSGSDVHWWGANATDFDNITSGFIVSDHSL 100
           ++E    Q+Q + ++SV +D +F V  F+     D+     +  + D+I    I+S  ++
Sbjct: 8   DFETGEHQYQYKDILSVFED-AF-VDNFDCKDVQDMPKSILSKEEIDHI----IMSKDAV 61

Query: 101 NETYKNATFTVLLLENITWEQIPVLSIWDSFTASDFGHMVLNGSDSGITLSSGLAPSPT- 159
           + T +   F  LL +    E++ V    +     ++             L S +      
Sbjct: 62  SGTLR--LFWTLLSKQ---EEM-VQKFVEEVLRINYKF-----------LMSPIKTEQRQ 104

Query: 160 PSSTRVLGAPT---MFDNCKVLSKEFRIRWTLYADENSIEIGLEAATGTQNYMAFGWANP 216
           PS    +       ++++ +V +K    R   Y     +   L      +N +  G    
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY---LKLRQALLELRPAKNVLIDG---- 157

Query: 217 NATSGFMLG-------ADVAMTGFKQEGLPF-VDDFYITKYSECVNKDGS--------YS 260
                 +LG        DV ++   Q  + F +  F++     C N   +          
Sbjct: 158 ------VLGSGKTWVALDVCLSYKVQCKMDFKI--FWLN-LKNC-NSPETVLEMLQKLLY 207

Query: 261 GVCPDAIYEGSDSGGLVNNTRLVYGHRRDGVSFIRYKRPL-----VSSDKKYD-FSVN-- 312
            + P+       S  +      +    R  +    Y+  L     V + K ++ F+++  
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 313 ---YTENMQVVWALGLLKPPDTLTPYYLPQNH-----GEPESVTYGHLVLNVSEHVNDCL 364
               T   QV   L         T  ++  +H        E  +   L+L   +     L
Sbjct: 268 ILLTTRFKQVTDFLS------AATTTHISLDHHSMTLTPDEVKS---LLLKYLDCRPQDL 318

Query: 365 GPLDAEDKEDQDLIIADANVPLVV-VTGEALH-YPNPPNPVKVFYINKKEAPVLRVERGV 422
            P +                P  + +  E++       +  K  ++N       ++   +
Sbjct: 319 -PREVLT-----------TNPRRLSIIAESIRDGLATWDNWK--HVNCD-----KLTTII 359

Query: 423 PVKFSIQAGHDV-ALY-----------ITSDILGG--NASLRNVTETIYAGGPEAEGVKA 468
               ++    +   ++           I + +L       +++    +       +  K 
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-----VNKLHKY 414

Query: 469 SPMELVWAPDRNTPDEVYYQSLYDQKMGWRIQVVDGG-----LSDMYNNSVVLDDQQVTF 523
           S   LV   ++   +      +    +  ++++ +       + D YN     D      
Sbjct: 415 S---LV---EKQPKESTIS--IPSIYLELKVKLENEYALHRSIVDHYNIPKTFD------ 460

Query: 524 FWTLSKDKESISFAARGEKKSGYLA--IGF---GSGMVNSYA-----YV--GWIDDIGK- 570
              L                  Y    IG                  ++   +++   K 
Sbjct: 461 SDDLIPPYL-----------DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--QKI 507

Query: 571 GHVNTYWIDSMDASGVHPTVENMTYVRCKSENGFITL---EFTRPLK------PSCNHSH 621
            H +T W  S     +  T++ + + +      +I     ++ R +       P    + 
Sbjct: 508 RHDSTAWNAS---GSILNTLQQLKFYK-----PYICDNDPKYERLVNAILDFLPKIEENL 559

Query: 622 RNSPKCKNII 631
             S    +++
Sbjct: 560 ICSK-YTDLL 568
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query904
1d7b_A186 Cellobiose dehydrogenase; B-type cytochrome, Met/H 99.58
1d7b_A186 Cellobiose dehydrogenase; B-type cytochrome, Met/H 99.29
1b3i_A97 PETE protein, protein (plastocyanin); electron tra 89.77
1iby_A112 Nitrosocyanin; RED copper, cupredoxin, beta hairpi 88.63
2ux6_A122 Pseudoazurin; type-1 copper, metal-binding, redox 88.17
3c75_A132 Amicyanin; copper proteins, electron transfer comp 87.83
2gim_A106 Plastocyanin; beta sheet, Cu, helix, electron tran 87.7
2ov0_A105 Amicyanin; beta-sandwich, electron transport; 0.75 87.58
1kdj_A102 Plastocyanin; electron transfer, photosystem, PAI- 87.23
1paz_A123 Pseudoazurin precursor; electron transfer(cupropro 86.65
1pmy_A123 Pseudoazurin; electron transfer(cuproprotein); 1.5 85.82
1id2_A106 Amicyanin; beta barrel, type-1 blue copper protein 85.69
1plc_A99 Plastocyanin; electron transport; 1.33A {Populus n 85.13
2plt_A98 Plastocyanin; electron transport; 1.50A {Chlamydom 84.63
2cal_A154 Rusticyanin; iron respiratory electron transport c 84.6
1bxv_A91 Plastocyanin; copper protein, electron transfer; 1 84.32
2cua_A135 Protein (CUA); CUA center, electron transport; 1.6 84.02
4hci_A100 Cupredoxin 1; structural genomics, niaid, national 83.3
1pcs_A98 Plastocyanin; electron transport; 2.15A {Synechocy 82.87
1iuz_A98 Plastocyanin; electron transport; 1.60A {Ulva pert 82.6
3tu6_A127 Pseudoazurin (blue copper protein); cupredoxins, b 81.99
3cvb_A105 Plastocyanin; cupredoxin, SELF assembly, copper, e 81.16
1byp_A99 Protein (plastocyanin); electron transfer, photosy 80.63
>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A* Back     alignment and structure
Probab=99.58  E-value=2.4e-14  Score=145.71  Aligned_cols=144  Identities=15%  Similarity=0.156  Sum_probs=111.8

Q ss_pred             CccEEEEEEEeCC------CceEEEEEEECCCccEEEEEeCCCCCCccEEEEEEcCCCcEEEEEEeecCCCCCccCCCcc
Q 048731          518 DQQVTFFWTLSKD------KESISFAARGEKKSGYLAIGFGSGMVNSYAYVGWIDDIGKGHVNTYWIDSMDASGVHPTVE  591 (904)
Q Consensus       518 ~~~~~l~Wt~~~~------~~sI~f~lsg~s~~GWVAiGfs~~M~gSdavIg~~d~dG~v~V~~~~~~G~s~p~v~pts~  591 (904)
                      ..+++|.|.++.+      ..+++|+|++|.+.||+|||+|.+|.|++|+|+|.++ |++++++|+.+|+.+|.+.+.++
T Consensus        22 ~~~~~f~~alP~~~~s~~~s~d~~~qi~~p~~~gW~g~g~Gg~M~gs~l~v~w~~~-~~v~~S~R~a~g~~~P~~y~~~~  100 (186)
T 1d7b_A           22 VHDVTYGFVFPPLATSGAQSTEFIGEVVAPIASKWIGIALGGAMNNDLLLVAWANG-NQIVSSTRWATGYVQPTAYTGTA  100 (186)
T ss_dssp             TTTEEEEEEBCCCCSSSCCCCCEEEEEEEETTCCEEEEETTSSSSSSCEEEEEEET-TEEEEEEEECSSSSCCEECCSSC
T ss_pred             CCCEEEEEECCCcccCCCCCccEEEEEEccCCCCEEEEecCCCCCCCcEEEEEeCC-CEEEEEEEEecCccCCCccCCCc
Confidence            3479999998743      2469999999977899999999999999999999986 89999999999999998544568


Q ss_pred             ceeeeeee-eeCcEEEEEEEccCCCCCCCC-CCCCCCcccccCCCCCeEEEEEecCCCCC--CCCc-cceeecccCCCcE
Q 048731          592 NMTYVRCK-SENGFITLEFTRPLKPSCNHS-HRNSPKCKNIIDPTTPLKVIWAMGSSWTD--GHLT-ERNMHFVKSQRPV  666 (904)
Q Consensus       592 ~l~~~~~~-~~dG~~t~~FtR~l~~~~~~~-~~~~~~~~~~~d~~~~~~iIwA~G~~~~~--~~l~-~~~~H~~~s~g~~  666 (904)
                      +++.+.++ +++++++++|+|+   +|..| +++.      ++.++...+|||++.....  .+.. ...+|+.  .|.+
T Consensus       101 ~~~lL~gs~vn~t~~~~~f~C~---~C~~w~~~g~------~~~ts~~~~iwA~~~~~p~~~~~~~a~~~~H~~--~G~~  169 (186)
T 1d7b_A          101 TLTTLPETTINSTHWKWVFRCQ---GCTEWNNGGG------IDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTD--FGFF  169 (186)
T ss_dssp             EEEECTTCEECSSEEEEEEEEE---TTTBCTTSCB------CCTTSEEEEEEEEESSCCSCTTCTTCCCCCCSE--EEEE
T ss_pred             eEEEcccccEeCCEEEEEEEeC---CCcccCCCCc------cccCCCCeEEEEECCCCCCCCCCCcccchhhhC--cceE
Confidence            89988877 8899999999997   78766 3331      2333333899999865432  2222 2367876  5688


Q ss_pred             EEEeecC
Q 048731          667 RVLLLRG  673 (904)
Q Consensus       667 ~idl~~G  673 (904)
                      .+||...
T Consensus       170 ~~dL~~a  176 (186)
T 1d7b_A          170 GIDYSTA  176 (186)
T ss_dssp             EEEGGGC
T ss_pred             EEEcccc
Confidence            9998753
>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A* Back     alignment and structure
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Back     alignment and structure
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Back     alignment and structure
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Back     alignment and structure
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A Back     alignment and structure
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Back     alignment and structure
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Back     alignment and structure
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Back     alignment and structure
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Back     alignment and structure
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Back     alignment and structure
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Back     alignment and structure
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1 Back     alignment and structure
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Back     alignment and structure
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A Back     alignment and structure
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Back     alignment and structure
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A Back     alignment and structure
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Back     alignment and structure
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A Back     alignment and structure
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Back     alignment and structure
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 904
d1pl3a_186 b.1.9.1 (A:) Cytochrome domain of cellobiose dehyd 2e-06
>d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 186 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: CBD9-like
family: Cytochrome domain of cellobiose dehydrogenase
domain: Cytochrome domain of cellobiose dehydrogenase
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 20/136 (14%), Positives = 36/136 (26%), Gaps = 16/136 (11%)

Query: 518 DQQVTFFWTLSKDKESIS------FAARGEKKSGYLAIGFGSGMVNSYAYVGWIDDIGKG 571
              VT+ +       S +              S ++ I  G    N    V W +   + 
Sbjct: 22  VHDVTYGFVFPPLATSGAQSTEFIGEVVAPIASKWIGIALGGAHNNDLLLVAWANG-NQI 80

Query: 572 HVNTYWIDSMDASGVHPTVENMTYVRCKSEN-GFITLEFTRPLKPSCNHSHRNSPKCKNI 630
             +T W         +     +T +   + N       F       C   +         
Sbjct: 81  VSSTRWATGYVQPTAYTGTATLTTLPETTINSTHWKWVFRC---QGCTEWNNGG-----G 132

Query: 631 IDPTTPLKVIWAMGSS 646
           ID T+   + WA  + 
Sbjct: 133 IDVTSQGVLAWAFSNV 148

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query904
d1pl3a_186 Cytochrome domain of cellobiose dehydrogenase {Fun 99.52
d1pl3a_186 Cytochrome domain of cellobiose dehydrogenase {Fun 99.25
d1e30a_153 Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920 96.44
d2jxma197 Plastocyanin {Photosynthetic prokaryote (Prochloro 96.23
d2ov0a1105 Amicyanin {Paracoccus denitrificans [TaxId: 266]} 95.27
d2plta_98 Plastocyanin {Green alga (Chlamydomonas reinhardti 94.69
d1ibya_112 Red copper protein nitrosocyanin {Nitrosomonas eur 94.5
d1id2a_106 Amicyanin {Paracoccus versutus (Thiobacillus versu 94.34
d1kdja_102 Plastocyanin {Fern (Adiantum capillus-veneris) [Ta 93.87
d1iuza_98 Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 93.65
d1bypa_99 Plastocyanin {White campion (Silene pratensis) [Ta 92.82
d2cuaa_122 Cytochrome c oxidase {Thermus thermophilus, ba3 ty 90.26
d1paza_120 Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta 89.27
d1bqka_124 Pseudoazurin {Achromobacter cycloclastes [TaxId: 2 87.76
d1pmya_123 Pseudoazurin {Methylobacterium extorquens, strain 87.26
d1plca_99 Plastocyanin {Poplar (Populus nigra), variant ital 86.76
d1bxua_91 Plastocyanin {Cyanobacterium (Synechocystis sp.), 86.1
d1pcsa_98 Plastocyanin {Cyanobacterium (Synechocystis sp.), 84.16
d1adwa_123 Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236 83.68
>d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: CBD9-like
family: Cytochrome domain of cellobiose dehydrogenase
domain: Cytochrome domain of cellobiose dehydrogenase
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.52  E-value=8.2e-14  Score=139.62  Aligned_cols=145  Identities=13%  Similarity=0.135  Sum_probs=108.3

Q ss_pred             ccEEEEEEEeCC------CceEEEEEEECCCccEEEEEeCCCCCCccEEEEEEcCCCcEEEEEEeecCCCCCccCCCccc
Q 048731          519 QQVTFFWTLSKD------KESISFAARGEKKSGYLAIGFGSGMVNSYAYVGWIDDIGKGHVNTYWIDSMDASGVHPTVEN  592 (904)
Q Consensus       519 ~~~~l~Wt~~~~------~~sI~f~lsg~s~~GWVAiGfs~~M~gSdavIg~~d~dG~v~V~~~~~~G~s~p~v~pts~~  592 (904)
                      .++++.+.++..      +.++.+++++|.+.||+|||||.+|.|++|+|+|++ +|++++++|+++|+..|.+.+....
T Consensus        23 ~~~~~~~a~P~~~~~~~~~~d~i~qi~ap~~~GWvgiG~gg~M~gs~l~V~w~~-~~~v~~S~R~atG~~~P~~~~~~~~  101 (186)
T d1pl3a_          23 HDVTYGFVFPPLATSGAQSTEFIGEVVAPIASKWIGIALGGAHNNDLLLVAWAN-GNQIVSSTRWATGYVQPTAYTGTAT  101 (186)
T ss_dssp             TTEEEEEEBCCCCSSSCCCCCEEEEEEEETTCCEEEEETTSSSSSSCEEEEEEE-TTEEEEEEEECSTTSCCEECCSSCE
T ss_pred             CCEEEEEEeCCcccCCCCCcCEEEEEeCCCCCcEEEEEcCCCCCCCcEEEEEec-CCeEEEEEEEecceeCCcccCCCce
Confidence            368888877642      458999999998899999999999999999999998 4899999999999999876444456


Q ss_pred             eeee-eeeeeCcEEEEEEEccCCCCCCCCCCCCCCcccccCCCCCeEEEEEecCCCC--CCCCc-cceeecccCCCcEEE
Q 048731          593 MTYV-RCKSENGFITLEFTRPLKPSCNHSHRNSPKCKNIIDPTTPLKVIWAMGSSWT--DGHLT-ERNMHFVKSQRPVRV  668 (904)
Q Consensus       593 l~~~-~~~~~dG~~t~~FtR~l~~~~~~~~~~~~~~~~~~d~~~~~~iIwA~G~~~~--~~~l~-~~~~H~~~s~g~~~i  668 (904)
                      +..+ ...+++++++++|+|+   +|..|.++.     ....+....+|||+|+...  ..+.+ ...+|+  ++|.+.+
T Consensus       102 ~~~l~~s~vn~t~~~~~f~C~---~C~~w~~~~-----~~~~~~~~~~iwA~~~~~p~~~~~~~~~i~~H~--~~G~f~~  171 (186)
T d1pl3a_         102 LTTLPETTINSTHWKWVFRCQ---GCTEWNNGG-----GIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHT--DFGFFGI  171 (186)
T ss_dssp             EEECTTCEECSSEEEEEEEEE---TCSBCTTSC-----BCCTTSEEEEEEEEESSCCSCTTCTTCCCCCCS--EEEEEEE
T ss_pred             EEEccCceEECCEEEEEEEEe---ccccccCCC-----cccCCCceEEEEEECCCCCCCCCCCccCcceec--CCceEEE
Confidence            6655 4568899999999996   454453332     2333566789999987542  12222 235785  4678999


Q ss_pred             EeecCc
Q 048731          669 LLLRGS  674 (904)
Q Consensus       669 dl~~Gs  674 (904)
                      ||..+.
T Consensus       172 dl~~a~  177 (186)
T d1pl3a_         172 DYSTAH  177 (186)
T ss_dssp             EGGGCB
T ss_pred             EcccCc
Confidence            996543
>d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} Back     information, alignment and structure
>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]} Back     information, alignment and structure
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Back     information, alignment and structure
>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Back     information, alignment and structure
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} Back     information, alignment and structure
>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} Back     information, alignment and structure
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]} Back     information, alignment and structure
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} Back     information, alignment and structure
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} Back     information, alignment and structure