Citrus Sinensis ID: 048732

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MCGSKRVWVSELIFILLAVKGWWSEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIEGE
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccccccccccEEEEEccccccEEEEEEcccccccccccccHHHHHccccccEEEccccccccccccHcHHHHccccccEEEEcccccccccccHHHcccccccEEEccccccccccccccc
Coil and Loop (DISEMBL)
MCGSKRVWVSELIFILLAVKGWWSEGCLEQERSALLQLKHFfndskhlhywndgenysdccqwegvecnnttGRVIKLDLAFRKRDSaewymnaslftpfqqlefldlsgnnitgcvqnegldrlsslknlkfldLTLNHFNnsifsslgglsslkhlslgtnelngsidiege
Flexible Loop (DISEMBL)
mcgskrvwVSELIFILLAVKGWWSEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKhlslgtnelngsidiege
Low Complexity Region (SEG)
MCGSKRVWVSELIFILLAVKGWWSEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFsslgglsslkhlslgTNELNGSIDIEGE
Disordered region (IsUnstruct)
*****RVWVSELIFILLAVKGWWSEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS***************
Disordered Region (DISOPRED)
****KRV*VSELIFILLAVKGWWSE*CLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIE**
Disordered Region (DISEMBL)
MCGSKRVWVSELIFILLAVKGWWSEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIEGE
Disordered Region (DISPRO)
MCGSKRVWVSELIFILLAVKGWWSEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN**I*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCGSKRVWVSELIFILLAVKGWWSEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIEGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.942	0.193	0.355	4e-13
Q05091	330	Polygalacturonase inhibit	N/A	no	0.804	0.424	0.337	1e-12
Q9M5J9	330	Polygalacturonase inhibit	no	no	0.781	0.412	0.309	7e-11
Q9LRT1	1016	Probably inactive leucine	no	no	0.908	0.155	0.314	4e-10
Q9FK10	601	Probable inactive recepto	no	no	0.879	0.254	0.307	6e-10
Q9SH71	587	Putative inactive recepto	no	no	0.793	0.235	0.349	6e-10
A7PW81	333	Polygalacturonase inhibit	no	no	0.798	0.417	0.301	2e-09
Q8W4S5	614	Probable LRR receptor-lik	no	no	0.850	0.241	0.337	2e-09
Q94AG2	625	Somatic embryogenesis rec	no	no	0.816	0.227	0.340	3e-09
O82318	960	Probably inactive leucine	no	no	0.798	0.144	0.325	4e-09

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 91/180 (50%), Gaps = 16/180 (8%)

Query: 1   MCGSKRVWVSE---LIFILLAVKGWWSEG---CLEQERSALLQLKHFF--NDSKH-LHYW 51
           M  S R WV     +IF+ L V    S     C + +R ALL+ +  F  N S H ++ W
Sbjct: 2   MIRSHRHWVFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQW 61

Query: 52  NDGENYS-DCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSG 110
               N S DCC W GV CN+ +G+VI LD+     ++     N+SLF   Q L  LDL+ 
Sbjct: 62  RGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNY-LKTNSSLFK-LQYLRHLDLTN 119

Query: 111 NNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170
            N+ G + +     L +L +L  ++L  N F   I +S+G L+ L+HL L  N L G I 
Sbjct: 120 CNLYGEIPSS----LGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIP 175

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 32/172 (18%)

Query: 24  SEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKL----- 78
           S+ C   ++  LLQ+K  F D   L  W   ++ +DCC W  V C++TT R+  L     
Sbjct: 24  SDLCNPDDKKVLLQIKKAFGDPYVLASW---KSDTDCCDWYCVTCDSTTNRINSLTIFAG 80

Query: 79  -----------DLAFRKRDSAEWYMNASLFTPFQQ-------LEFLDLSGNNITGCVQNE 120
                      DL +   ++ E++   +L  P Q        L+ L LS  N++G V   
Sbjct: 81  QVSGQIPALVGDLPYL--ETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSGSVP-- 136

Query: 121 GLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIE 172
             D LS LKNL FLDL+ N+   +I SSL  L +L  L L  N+L G I I 
Sbjct: 137 --DFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPIS 186

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Pyrus communis (taxid: 23211)

>sp|Q9M5J9|PGIP1_ARATH Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 32/168 (19%)

Query: 27  CLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTT--GRVIKLD----- 79
           C + +++ LL++K   N+  HL  W   +  +DCC W  +EC + T   RV  L      
Sbjct: 25  CNQNDKNTLLKIKKSLNNPYHLASW---DPQTDCCSWYCLECGDATVNHRVTALTIFSGQ 81

Query: 80  -----------------LAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGL 122
                            L FRK  +    +  ++    + L  L LS  N+TG +     
Sbjct: 82  ISGQIPAEVGDLPYLETLVFRKLSNLTGTIQPTI-AKLKNLRMLRLSWTNLTGPIP---- 136

Query: 123 DRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170
           D +S LKNL+FL+L+ N  + SI SSL  L  +  L L  N+L GSI 
Sbjct: 137 DFISQLKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIP 184

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 17/175 (9%)

Query: 1   MCGSKRVWVSELIFILLAVKGWWSEG-----CLEQERSALLQLKHFFNDS-KHLHYWNDG 54
           M   +R  +S  +F+ L +      G      L  +   L+  K   ND   HL  W + 
Sbjct: 1   MGKQRRTMISFTLFLTLTMMSSLINGDTDSIQLNDDVLGLIVFKSDLNDPFSHLESWTED 60

Query: 55  ENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNIT 114
           +N    C W  V+CN  T RVI+L L      +    +N  +    Q+L+ L LS NN T
Sbjct: 61  DNTP--CSWSYVKCNPKTSRVIELSLDGL---ALTGKINRGI-QKLQRLKVLSLSNNNFT 114

Query: 115 GCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSI 169
           G +     + LS+  +L+ LDL+ N+ +  I SSLG ++SL+HL L  N  +G++
Sbjct: 115 GNI-----NALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTL 164

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK10|Y5332_ARATH Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 26/179 (14%)

Query: 12  LIFILLAVKGWWSEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNT 71
           LI I++          +++++  LLQ   F N+  H H  N   + S C +W GV CN+ 
Sbjct: 7   LILIVVIFNVCIEAETIKEDKHTLLQ---FVNNINHSHSLNWSPSLSICTKWTGVTCNSD 63

Query: 72  TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQN--EGLDRLSSLK 129
              V  L LA          +  S+      L FL LS NNI+G      + L  L+ LK
Sbjct: 64  HSSVDALHLA---ATGLRGDIELSIIARLSNLRFLILSSNNISGTFPTTLQALKNLTELK 120

Query: 130 ------------------NLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170
                              L+ LDL+ N FN SI SS+G L+ L  L+L  N+ +G I 
Sbjct: 121 LDFNEFSGPLPSDLSSWERLQVLDLSNNRFNGSIPSSIGKLTLLHSLNLAYNKFSGEIP 179

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH71|Y1421_ARATH Putative inactive receptor-like protein kinase At1g64210 OS=Arabidopsis thaliana GN=At1g64210 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 80/169 (47%), Gaps = 31/169 (18%)

Query: 24  SEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQ-WEGVECNNTTGRVIKLDLAF 82
           S   LE ++ ALL     FN S+ LH WN     SD C  W GV CN    R++ + L  
Sbjct: 18  SSQTLEDDKKALLHFLSSFNSSR-LH-WNQS---SDVCHSWTGVTCNENGDRIVSVRLPA 72

Query: 83  R-----------KRDSAEWYMN----------ASLFTPFQQLEFLDLSGNNITGCVQNEG 121
                        R S+  +++           S FT  + L  L L  N+++G +    
Sbjct: 73  VGFNGLIPPFTISRLSSLKFLSLRKNHFTGDFPSDFTNLKSLTHLYLQHNHLSGPL---- 128

Query: 122 LDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170
           L   S LKNLK LDL+ N FN SI +SL GL+SL+ L+L  N  +G I 
Sbjct: 129 LAIFSELKNLKVLDLSNNGFNGSIPTSLSGLTSLQVLNLANNSFSGEIP 177

Arabidopsis thaliana (taxid: 3702)

>sp|A7PW81|PGIP_VITVI Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 30/169 (17%)

Query: 24  SEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLD---- 79
           SE C  +++  LLQ+K   ++   L  WN     +DCC W  VEC+ TT R+  L     
Sbjct: 27  SERCNPKDKKVLLQIKKALDNPYILASWNPN---TDCCGWYCVECDLTTHRINSLTIFSG 83

Query: 80  ------------------LAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEG 121
                             L FRK  +    +  ++    + L+ + LS  N++G V    
Sbjct: 84  QLSGQIPDAVGDLPFLETLIFRKLSNLTGQIPPAIAK-LKHLKMVRLSWTNLSGPVPA-- 140

Query: 122 LDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170
               S LKNL +LDL+ N+ +  I  SL  L +L  L L  N L G I 
Sbjct: 141 --FFSELKNLTYLDLSFNNLSGPIPGSLSLLPNLGALHLDRNHLTGPIP 187

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Vitis vinifera (taxid: 29760)

>sp|Q8W4S5|Y5371_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g63710 OS=Arabidopsis thaliana GN=At5g63710 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 14  FILLAVKGWWSEGCLEQ-ERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTT 72
           F+ LA  G  S       E  ALLQL+   NDS +   W   +  S C  W  V C   +
Sbjct: 35  FMALAFVGITSSTTQPDIEGGALLQLRDSLNDSSNRLKWTR-DFVSPCYSWSYVTCRGQS 93

Query: 73  GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLK 132
             V+ L+LA     S      +   T  + L  L+L  N+++G +     D L ++ NL+
Sbjct: 94  --VVALNLA----SSGFTGTLSPAITKLKFLVTLELQNNSLSGALP----DSLGNMVNLQ 143

Query: 133 FLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIE 172
            L+L++N F+ SI +S   LS+LKHL L +N L GSI  +
Sbjct: 144 TLNLSVNSFSGSIPASWSQLSNLKHLDLSSNNLTGSIPTQ 183

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 82/176 (46%), Gaps = 34/176 (19%)

Query: 10  SELIFILLAV------KGWWSEGCLEQERSALLQLKHFFNDSKH-LHYWNDGENYSDCCQ 62
           S ++FILL++        W +   LE +  AL  L+    D  + L  W+      + C 
Sbjct: 4   SYVVFILLSLILLPNHSLWLASANLEGD--ALHTLRVTLVDPNNVLQSWD--PTLVNPCT 59

Query: 63  WEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASL---FTP----FQQLEFLDLSGNNITG 115
           W  V CNN    VI++DL            NA L     P     + L++L+L  NNITG
Sbjct: 60  WFHVTCNNENS-VIRVDLG-----------NAELSGHLVPELGVLKNLQYLELYSNNITG 107

Query: 116 CVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI 171
            + +     L +L NL  LDL LN F+  I  SLG LS L+ L L  N L GSI +
Sbjct: 108 PIPSN----LGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPM 159

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 27/166 (16%)

Query: 27  CLEQ-ERSALLQLKHFFNDS-KHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRK 84
           CL   E   LL  K    D  KHL  W+     +D C W GV CNN + RV+ LDL+  K
Sbjct: 26  CLHANELELLLSFKSSIQDPLKHLSSWSYSST-NDVCLWSGVVCNNIS-RVVSLDLS-GK 82

Query: 85  RDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSS----------------- 127
             S +    A+   PF  L+ ++LS NN++G + ++     S                  
Sbjct: 83  NMSGQILTAATFRLPF--LQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGSIP 140

Query: 128 ---LKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170
              L NL  LDL+ N F   I++ +G  S+L+ L LG N L G + 
Sbjct: 141 RGFLPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVP 186

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
224120284	929	predicted protein [Populus trichocarpa]	0.931	0.174	0.511	6e-38
224120450	935	predicted protein [Populus trichocarpa]	0.879	0.163	0.512	3e-36
224107431	173	predicted protein [Populus trichocarpa]	0.919	0.924	0.485	5e-33
224142499	436	predicted protein [Populus trichocarpa]	0.959	0.383	0.474	1e-32
224142513	290	predicted protein [Populus trichocarpa]	0.902	0.541	0.463	1e-31
224145105	280	predicted protein [Populus trichocarpa]	0.942	0.585	0.473	2e-31
255583082	711	serine-threonine protein kinase, plant-t	0.942	0.230	0.470	5e-31
255585991	743	serine-threonine protein kinase, plant-t	0.908	0.212	0.475	3e-30
224142723	923	predicted protein [Populus trichocarpa]	0.896	0.169	0.472	3e-30
224142503	177	predicted protein [Populus trichocarpa]	0.959	0.943	0.474	3e-30

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 118/168 (70%), Gaps = 6/168 (3%)

Query: 9   VSELIFILLAVKGWWSEGCLEQERSALLQLKHFFN--DSKHLHYWNDGENYSDCCQWEGV 66
           V  +I +++ ++GW   GCLE+ER ALLQ+K  F+  +    H W    N   CC+W+ V
Sbjct: 10  VIMIINVVVLIQGWRCHGCLEEERVALLQIKDAFSYPNGSFPHSWGRDAN---CCEWKQV 66

Query: 67  ECNNTTGRVIKLDLAF-RKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRL 125
           +CN+TT RV+K+DL+F R  +  +W +NASLF PF +L  L+L GN I GC++NEG +RL
Sbjct: 67  QCNSTTLRVVKIDLSFSRGWELGDWLLNASLFLPFPELNALNLYGNRIAGCLENEGFERL 126

Query: 126 SSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIEG 173
           S L NL+ L+L  N FN+SIFSSLGGLSSLK+LSL  NE+ G+I +EG
Sbjct: 127 SVLGNLEILELGQNKFNSSIFSSLGGLSSLKNLSLHNNEIEGTISVEG 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120450|ref|XP_002331051.1| predicted protein [Populus trichocarpa] gi|222872981|gb|EEF10112.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 110/160 (68%), Gaps = 7/160 (4%)

Query: 17  LAVKGWWS-EGCLEQERSALLQLKHFFN--DSKHLHYWNDGENYSDCCQWEGVECNNTTG 73
           + +  WWS  GCL++ERSALL++K  FN      L  W      +DCC W+GV+CN TTG
Sbjct: 1   MDLNSWWSCHGCLDEERSALLRIKSSFNYPSGTFLQSWGK---VADCCSWKGVDCNFTTG 57

Query: 74  RVIKLDLAFRKRDS-AEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLK 132
           RV++LDL+ ++ +   + Y+N SLF PFQ+L++LDLSGN I GCV+NEG +RLS L +L 
Sbjct: 58  RVVQLDLSSKREEGLGDLYLNVSLFRPFQELQYLDLSGNFIVGCVENEGFERLSGLDSLV 117

Query: 133 FLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIE 172
           FLDL +N F+N I SSLGGLS L  L L  N+L G I ++
Sbjct: 118 FLDLGVNKFDNRILSSLGGLSCLTTLYLDGNQLKGEISVD 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107431|ref|XP_002333512.1| predicted protein [Populus trichocarpa] gi|222837050|gb|EEE75429.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 109/167 (65%), Gaps = 7/167 (4%)

Query: 11  ELIFILLAVKGWWSEGCLEQERSALLQLKHFFN-DSKHLHYWNDGENYSDCCQWEGVECN 69
            ++ +++      S+GCLE+ER ALLQ+K   N  S  L  W      + CC WEGV C+
Sbjct: 9   PVVVVMMINAMLLSQGCLEEERIALLQIKTSLNLTSSPLLSWGKD---ALCCSWEGVTCS 65

Query: 70  N--TTGRVIKLDLAF-RKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLS 126
           N  TT RV+++ L + R     +WY+NAS+F PFQ+L+ LDL  N I  CV NEG +RLS
Sbjct: 66  NSTTTRRVVEIHLYYTRDWSMGDWYLNASIFLPFQELKVLDLGANRIACCVANEGFERLS 125

Query: 127 SLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIEG 173
            L  L+ L L+LN+FNNSI SS+ GLSSLK+L+L  N+L GSID +G
Sbjct: 126 RLAKLEVLYLSLNNFNNSILSSMKGLSSLKYLNLDFNQLQGSIDTKG 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142499|ref|XP_002324594.1| predicted protein [Populus trichocarpa] gi|222866028|gb|EEF03159.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/177 (47%), Positives = 112/177 (63%), Gaps = 10/177 (5%)

Query: 3   GSKRVWVSELIFILLAVKGWWSEGCLEQERSALLQLKHFFND-----SKHLHYWNDGENY 57
           G  R  +  +  +++      S+GCLE+ER ALLQ+K  F D     +  L  W      
Sbjct: 2   GLNRFSLPAVAVMVMINAMLLSQGCLEEERIALLQIKTSFGDHPNDIASPLFSWGKD--- 58

Query: 58  SDCCQWEGVECNN-TTGRVIKLDLAF-RKRDSAEWYMNASLFTPFQQLEFLDLSGNNITG 115
           + CC W+ V C+N TT RVI+++L F R R   + Y+NAS+F PFQ+L  LDLSGN I G
Sbjct: 59  ALCCSWKRVTCSNSTTRRVIEINLYFTRDRSMEDLYLNASIFLPFQELNVLDLSGNGIAG 118

Query: 116 CVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIE 172
           CV NEG +RLS L  L+ L L+ N+FNNSI SS+ GLSSLK+L+L  N+L GSID +
Sbjct: 119 CVANEGFERLSRLAKLEVLLLSDNYFNNSILSSMKGLSSLKYLNLDFNQLQGSIDTK 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142513|ref|XP_002324601.1| predicted protein [Populus trichocarpa] gi|222866035|gb|EEF03166.1| predicted protein [Populus trichocarpa]

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/179 (46%), Positives = 108/179 (60%), Gaps = 22/179 (12%)

Query: 13  IFILLAVKGWWS-EGCLEQERSALLQLKHFFNDSKH----LHYWNDGENYSDCCQWEGVE 67
           + +++ +      EGCLE+ER ALLQ+K    D  H    L  W  GE+ + CC W GV 
Sbjct: 10  VVVMMMINAMLPLEGCLEEERIALLQIKTSMVDPNHMGSPLLSW--GED-ALCCNWAGVT 66

Query: 68  CNNTTGRVIKLDLAF--------------RKRDSAEWYMNASLFTPFQQLEFLDLSGNNI 113
           C++ TGRVI + L                R     +WY+NA++F PFQ+L  L LS N+I
Sbjct: 67  CDSITGRVIVIFLHNARGWFIDPSKGVWDRNASMGDWYLNATMFLPFQELNTLGLSNNDI 126

Query: 114 TGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIE 172
            GCV NEG +RLS L  L+ LDL LN+FNNSI SS  GLSSLKH+ L +N+L GSIDI+
Sbjct: 127 AGCVPNEGFERLSRLTKLESLDLGLNNFNNSILSSFKGLSSLKHIYLESNQLKGSIDIK 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145105|ref|XP_002336200.1| predicted protein [Populus trichocarpa] gi|222832534|gb|EEE71011.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 104/169 (61%), Gaps = 5/169 (2%)

Query: 9   VSELIFILLAVKGWWSEGCLEQERSALLQLKHFFN--DSKHLHYWNDGENYSDCCQWEGV 66
           V  ++ I ++++GW   GCLE+ER ALL LK   N  +   L  W   +  + CC WE +
Sbjct: 7   VFTVLVITVSLQGWVPLGCLEEERIALLHLKDSLNYPNGTSLPSWIKAD--AHCCDWESI 64

Query: 67  ECNNTTGRVIKLDL-AFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRL 125
            CN++TGRV +LDL + R  +  +WY+NASLF PFQQL  L L GN I G V+N+G   L
Sbjct: 65  GCNSSTGRVTELDLWSVRNEELGDWYLNASLFLPFQQLNALSLYGNRIAGWVENKGGYEL 124

Query: 126 SSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIEGE 174
             L NL+ LDL  N FNNSI S + GL SLK L L  N L G ID++G 
Sbjct: 125 QKLSNLEILDLGYNSFNNSILSFVEGLPSLKSLYLDYNRLEGLIDLKGP 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583082|ref|XP_002532308.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223527977|gb|EEF30060.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 113/172 (65%), Gaps = 8/172 (4%)

Query: 7   VWVSELIFILLAVKGWWS-EGCLEQERSALLQLKHFFN--DSKHLHYWNDGENYSDCCQW 63
           V +  +  I + ++G W  +GCLE ER+AL+Q+K FFN  +   L +W     Y+DCC W
Sbjct: 7   VVLVMMTIIFIDIQGKWRCDGCLEVERNALMQIKAFFNYPNGNFLSFWGF---YTDCCNW 63

Query: 64  EGVECNNTTGRVIKLDLAFRKR--DSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEG 121
            GV CN T GRV +L L   +   DS +WY+NASLF PFQ+L+ LD+  N I GC+ NEG
Sbjct: 64  NGVVCNTTAGRVTELHLGGIRYGWDSKDWYLNASLFLPFQELKHLDVFRNKIVGCINNEG 123

Query: 122 LDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIEG 173
            +RLS+L+NL+ L+L  N+F N+I SS GGL SL  L +  N L G++++EG
Sbjct: 124 FERLSTLENLELLNLGYNNFINNILSSFGGLLSLTTLYINENTLKGTLNVEG 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585991|ref|XP_002533665.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526433|gb|EEF28711.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 108/166 (65%), Gaps = 8/166 (4%)

Query: 12  LIFILLAVKG-WWSEGCLEQERSALLQLKHFFN--DSKHLHYWNDGENYSDCCQWEGVEC 68
           +  I + ++G W S+GCLE ER+AL+Q+K FFN  +   L  W     Y DCC W  V C
Sbjct: 1   MTIIFIDIQGKWRSDGCLEVERNALMQIKPFFNYHNGNFLSSWGF---YDDCCNWNKVVC 57

Query: 69  NNTTGRVIKLDLAFRKR--DSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLS 126
           N  TGRV  L L   +   DS +WY+NASLF PFQ+L+ L + GNNI GC++NEG +RLS
Sbjct: 58  NTITGRVTALQLGGTRHGWDSKDWYLNASLFLPFQELKNLSVFGNNIAGCIENEGFERLS 117

Query: 127 SLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIE 172
           +L+NL+ L+L  N+FNN+I S     SSLK L +  N+L G +++E
Sbjct: 118 TLENLEILNLGYNNFNNNILSFFSDFSSLKSLYMNDNKLKGILNVE 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142723|ref|XP_002324704.1| predicted protein [Populus trichocarpa] gi|222866138|gb|EEF03269.1| predicted protein [Populus trichocarpa]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 103/161 (63%), Gaps = 5/161 (3%)

Query: 16  LLAVKGWWSEGCLEQERSALLQLKHFFN--DSKHLHYWNDGENYSDCCQWEGVECNNTTG 73
           +++++GW   GCLE+ER ALL LK   N  +   L  W  G+  + CC WE + C+++TG
Sbjct: 1   MVSLQGWLPLGCLEEERIALLHLKDALNYPNGTSLPSWIKGD--AHCCDWESIICDSSTG 58

Query: 74  RVIKLDL-AFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLK 132
           RV +LDL   R R+  +WY+NASLF PFQQL  L L+ N I G V+ +G    S L NL+
Sbjct: 59  RVTELDLEGVRDRELGDWYLNASLFLPFQQLNGLYLTANRIAGLVEKKGGYEQSRLSNLE 118

Query: 133 FLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIEG 173
           +LDL +N F+NSI S +  LSSLK L L  N L G ID++G
Sbjct: 119 YLDLGINGFDNSILSYVERLSSLKSLYLNYNRLEGLIDLKG 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142503|ref|XP_002324596.1| predicted protein [Populus trichocarpa] gi|222866030|gb|EEF03161.1| predicted protein [Populus trichocarpa]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/179 (47%), Positives = 105/179 (58%), Gaps = 12/179 (6%)

Query: 3   GSKRVWVSELIFILLAVKGWWSEGCLEQERSALLQLKHFFND------SKHLHYWNDGEN 56
           G  R  +  +  I++      S+GCLE+ER ALLQ+K  F D      S  L +  D   
Sbjct: 2   GLNRFSLPAVAVIMMINAMLLSQGCLEEERIALLQIKTSFGDHPNDIPSSLLSWGKDAL- 60

Query: 57  YSDCCQWEGVECNN-TTGRVIKLDLAFRKRDSAE-WYMNASLFTPFQQLEFLDLSGNNIT 114
              CC WEGV C+N TT RVI+++L F +  S E  Y+NAS+F PFQ+L  LDLSGN I 
Sbjct: 61  ---CCSWEGVTCSNSTTRRVIEINLYFTRYWSLEDLYLNASIFLPFQELNVLDLSGNGIA 117

Query: 115 GCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIEG 173
           GCV NEG +RLS L  L+ L L  N  NNSI SS    SSLKHL L  N    SID++G
Sbjct: 118 GCVANEGFERLSRLAKLEVLSLGDNFLNNSILSSFKRFSSLKHLYLDNNGFQDSIDMKG 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.931	0.165	0.335	7.4e-20
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.821	0.152	0.381	2.4e-19
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.827	0.158	0.344	3.1e-17
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.908	0.163	0.313	3.4e-17
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.741	0.177	0.328	1.3e-11
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.816	0.163	0.318	2.2e-11
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.580	0.140	0.35	6.9e-11
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.925	0.190	0.320	9.4e-11
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.775	0.189	0.292	1.2e-10
TAIR|locus:2096339	786	RLP30 "receptor like protein 3	0.770	0.170	0.317	1.8e-10

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 7.4e-20, P = 7.4e-20
 Identities = 61/182 (33%), Positives = 99/182 (54%)

Query:     3 GSKRVWVSELIFILLAVKGWWSEGCLEQERSALLQLKHFFNDSKH-------LHYWNDGE 55
             G   +WV   + +L+ ++G+  + C+E+ER ALL+LK +             L  W + +
Sbjct:     8 GQNLIWV---MLLLVQLRGY--KCCIEKERKALLELKKYMISKTADWGLDSVLPTWTN-D 61

Query:    56 NYSDCCQWEGVECNNTTGRVIKLDLAFRK-RDSAEWYMNASLFTPFQQLEFLDLSG---N 111
               S+CC+WEG++CN T+GR+I+L +     ++S+   +N SL  PF++L  L+LSG   N
Sbjct:    62 TKSNCCRWEGLKCNQTSGRIIELSIGQTNFKESS--LLNLSLLHPFEELRSLNLSGEIYN 119

Query:   112 NITGCVQN-EGLDRLSSLKNLKFLDLTLNHFNNSIFXXXXXXXXXXXXXXXTNELNGSID 170
                G   + EG + L  L+NL+ LDL+ N FNNSIF               +N + G + 
Sbjct:   120 EFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLP 179

Query:   171 IE 172
             I+
Sbjct:   180 IK 181

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 61/160 (38%), Positives = 89/160 (55%)

Query:    27 CLEQERSALLQLKHFF-NDSKH--LHY----WNDGENYSDCCQWEGVECNNTTGRVIKLD 79
             C+E+ER ALL+LK +  + S+   L Y    W + +  SDCCQW+G++CN T+GRVI+L 
Sbjct:    13 CIEKEREALLELKKYLMSRSRESGLDYVLPTWTN-DTKSDCCQWDGIKCNRTSGRVIELS 71

Query:    80 LA--FRKRDSAEWYMNASLFTPFQQLEFLDLS--G-NNITGCVQN-EGLDRLSSLKNLKF 133
             +   + K  S    +N SL  PF+++  L+LS  G N   G   + EG   LS L+NLK 
Sbjct:    72 VGDMYFKESSP---LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEGYRSLSGLRNLKI 128

Query:   134 LDLTLNHFNNSIFXXXXXXXXXXXXXXXTNELNGSIDIEG 173
             +DL+ N+FN S F                NE++G   I+G
Sbjct:   129 MDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKG 168

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 3.1e-17, P = 3.1e-17
 Identities = 53/154 (34%), Positives = 79/154 (51%)

Query:    27 CLEQERSALLQLKHF-FNDSKHLHY------WNDGENYSDCCQWEGVECNNTTGRVIKLD 79
             C+E+ER ALL+LK F  +  +   Y      W + +  SDCCQWE ++CN T+ R+  L 
Sbjct:    13 CIEKERKALLELKKFVMSRCEECEYDSVLPTWTN-DTKSDCCQWENIKCNRTSRRLTGLS 71

Query:    80 LAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQN-EGLDRLSSLKNLKFLDLTL 138
             L +         +N SL  PF+++  LDLS + + G V + EG   L  L+NL+ L+ + 
Sbjct:    72 L-YTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFSS 130

Query:   139 NHFNNSIFXXXXXXXXXXXXXXXTNELNGSIDIE 172
             N FNNSIF                N + G I ++
Sbjct:   131 NEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLK 164

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 3.4e-17, P = 3.4e-17
 Identities = 54/172 (31%), Positives = 90/172 (52%)

Query:     3 GSKRVWVSELIFILLAVKGWWSEGCLEQERSALLQL-KHFFNDSKH---LHYWNDGENYS 58
             G   +WV   + ++  + G+ S  C+++E+ AL +L KH  + ++    L  W + +  S
Sbjct:     8 GHNLIWV---MLLMGQLHGYKS--CIDEEKIALFELRKHMISRTESESVLPTWTN-DTTS 61

Query:    59 DCCQWEGVECNNTTGRVIKLDLA-FRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCV 117
             DCC+W+GV CN  +GRV ++       +D++   +N SL  PF+ +  L+LS +  +G  
Sbjct:    62 DCCRWKGVACNRVSGRVTEISFGGLSLKDNS--LLNLSLLHPFEDVRSLNLSSSRCSGLF 119

Query:   118 QN-EGLDRLSSLKNLKFLDLTLNHFNNSIFXXXXXXXXXXXXXXXTNELNGS 168
              + EG   L  L+ L+ LDL  N FNNSIF               +N ++GS
Sbjct:   120 DDVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGS 171

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
 Identities = 47/143 (32%), Positives = 72/143 (50%)

Query:     2 CGSKR----VWVSELIFILL-AVKGWWSEGCLEQERSALLQLKHFFNDSK---HLHYWND 53
             C  +R    +W   LIF L  ++     + CL  +R ALL+ K+ F   +   H+     
Sbjct:     4 CSERRMMTVIWSLCLIFCLSNSILAIAKDLCLPDQRDALLEFKNEFYVQEFDPHMKCEKA 63

Query:    54 GE---NYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSG 110
              E   N +DCC W  V C+  TG+V++LDL      +     N+SLF   Q L+ L+LS 
Sbjct:    64 TETWRNKTDCCSWNRVSCDPKTGKVVELDL-MSSCLNGPLRSNSSLFR-LQHLQSLELSS 121

Query:   111 NNITGCVQNEGLDRLSSLKNLKF 133
             NNI+G +  + +  L  L++L F
Sbjct:   122 NNISGILP-DSIGNLKYLRSLSF 143

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 49/154 (31%), Positives = 74/154 (48%)

Query:    27 CLEQERSALLQLKHFFNDSKH----LHYWNDG-ENYSDCCQWEGVECNNTTGRVIKLDLA 81
             C  ++R ALL+LK  F   K     LH   +   N SDCC W+G+ CN+ +G V++LDL+
Sbjct:    39 CRLEQRDALLELKKEFKIKKPCFDGLHPTTESWANNSDCCYWDGITCNDKSGEVLELDLS 98

Query:    82 FRKRDSAEWYMNASLFTPFQQ--LEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLN 139
              R    + ++ N+SLFT      L  LDLS N  +G + +     + +  +L  LDL+ N
Sbjct:    99 -RSCLQSRFHSNSSLFTVLNLRFLTTLDLSYNYFSGQIPS----CIENFSHLTTLDLSKN 153

Query:   140 HFNNSIFXXXXXXXXXXXXXXXTNELNGSIDIEG 173
             +F+  I                 NE  G +   G
Sbjct:   154 YFSGGIPSSIGNLSQLTFLDLSGNEFVGEMPFFG 187

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
 Identities = 42/120 (35%), Positives = 62/120 (51%)

Query:    27 CLEQERSALLQLK-----HFFNDS-----KHLHYWNDGENYSDCCQWEGVECNNTTGRVI 76
             C + +++ALL+ K     H FN +     K    W    N +DCC W+G+ C+  TG+V+
Sbjct:    29 CRQDQKNALLEFKNEFYVHEFNSNGIVGVKKTEKWR---NNTDCCSWDGISCDPKTGKVV 85

Query:    77 KLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDL 136
             +LDL     +    Y ++SLF   Q L  LDL  NN +G +     D + SLK L+ L L
Sbjct:    86 ELDLMNSFLNGPLRY-DSSLFR-LQHLHNLDLGSNNFSGILP----DSIGSLKYLRVLSL 139

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 58/181 (32%), Positives = 82/181 (45%)

Query:     1 MCGSKRVWVSE---LIFILLAVKGWWSEG---CLEQERSALLQLKHFF--NDSKHL-HYW 51
             M  S R WV     +IF+ L V    S     C + +R ALL+ +  F  N S H+ + W
Sbjct:     2 MIRSHRHWVFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQW 61

Query:    52 NDGENYS-DCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYM--NASLFTPFQQLEFLDL 108
                 N S DCC W GV CN+ +G+VI LD+     ++   Y+  N+SLF   Q L  LDL
Sbjct:    62 RGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNN---YLKTNSSLFK-LQYLRHLDL 117

Query:   109 SGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFXXXXXXXXXXXXXXXTNELNGS 168
             +  N+ G + +     L +L +L  ++L  N F   I                 N L G 
Sbjct:   118 TNCNLYGEIPSS----LGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGE 173

Query:   169 I 169
             I
Sbjct:   174 I 174

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 46/157 (29%), Positives = 70/157 (44%)

Query:    27 CLEQERSALLQLKHFFNDSKHLHY--------------WNDGENYSDCCQWEGVECNNTT 72
             C  +++ ALL+ K  F   K   Y              W  G N SDCC WEGV CN  +
Sbjct:    37 CRPEQKDALLKFKTEFEIGKPCRYCTVYCIEPHPKTESW--GNNNSDCCNWEGVTCNAKS 94

Query:    73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLK 132
             G VI+LDL+        ++ N+S+      L  LDLS N+  G + +     + +L +L 
Sbjct:    95 GEVIELDLSCSYLHG-RFHSNSSIRN-LHFLTTLDLSFNDFKGQIMSS----IENLSHLT 148

Query:   133 FLDLTLNHFNNSIFXXXXXXXXXXXXXXXTNELNGSI 169
             +LDL+ NHF+  +                 N+ +G +
Sbjct:   149 YLDLSFNHFSGQVPSSIGNLSHLTFLDLYCNQFSGQV 185

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2096339 RLP30 "receptor like protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 47/148 (31%), Positives = 70/148 (47%)

Query:    27 CLEQERSALLQLKHFF--NDSK---HLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLA 81
             C   +R ALL+ KH F  ++SK    L  WN     SDCC WEGV C++ +G V+ LDL+
Sbjct:    37 CRHDQRDALLEFKHEFPVSESKPSPSLSSWN---KTSDCCFWEGVTCDDESGEVVSLDLS 93

Query:    82 FRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHF 141
             +   +++     + LF   QQL+ L LS  ++ G V +     L +L  L  LDL+ N  
Sbjct:    94 YVLLNNS-LKPTSGLFK-LQQLQNLTLSDCHLYGEVTSS----LGNLSRLTHLDLSSNQL 147

Query:   142 NNSIFXXXXXXXXXXXXXXXTNELNGSI 169
                +                 N  +G+I
Sbjct:   148 TGEVLASVSKLNQLRDLLLSENSFSGNI 175

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.9 bits (153), Expect = 5e-12
 Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 32/162 (19%)

Query: 30  QERSALLQLKHFFND-SKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFR----K 84
           +E   LL  K   ND  K+L  WN     +D C W+G+ CNN++ RV+ +DL+ +    K
Sbjct: 29  EELELLLSFKSSINDPLKYLSNWNSS---ADVCLWQGITCNNSS-RVVSIDLSGKNISGK 84

Query: 85  RDSAEWYM------NAS-----------LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSS 127
             SA + +      N S           +FT    L +L+LS NN TG +         S
Sbjct: 85  ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR------GS 138

Query: 128 LKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSI 169
           + NL+ LDL+ N  +  I + +G  SSLK L LG N L G I
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 29/154 (18%)

Query: 28  LEQERSALLQLKHFFNDSKHLHYWNDGENYSDCC-----QWEGVEC--NNTTGR--VIKL 78
           L +E SAL  LK           WN      D C      W G +C  ++T G+  +  L
Sbjct: 370 LLEEVSALQTLKSSLGLPLRFG-WN-----GDPCVPQQHPWSGADCQFDSTKGKWFIDGL 423

Query: 79  DL---AFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLD 135
            L     R     +        +  + L+ ++LSGN+I G +       L S+ +L+ LD
Sbjct: 424 GLDNQGLRGFIPNDI-------SKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLD 472

Query: 136 LTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSI 169
           L+ N FN SI  SLG L+SL+ L+L  N L+G +
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
           F  L+ LDL GN + G + N     L++L +L+FL L  N     I   LG + SLK + 
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNS----LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218

Query: 160 LGTNELNGSIDIE 172
           LG N L+G I  E
Sbjct: 219 LGYNNLSGEIPYE 231

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 98  TPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKH 157
           T    LEFL L+ N + G +  E    L  +K+LK++ L  N+ +  I   +GGL+SL H
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 158 LSLGTNELNGSI 169
           L L  N L G I
Sbjct: 241 LDLVYNNLTGPI 252

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 23/104 (22%)

Query: 69  NNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSL 128
           NN  GR+          +S +W M          L+ L L+ N   G     GL      
Sbjct: 438 NNLQGRI----------NSRKWDM--------PSLQMLSLARNKFFG-----GLPDSFGS 474

Query: 129 KNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIE 172
           K L+ LDL+ N F+ ++   LG LS L  L L  N+L+G I  E
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                +L  L LS N ++G + +E    LSS K L  LDL+ N  +  I +S   +  L 
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDE----LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

Query: 157 HLSLGTNELNGSI 169
            L L  N+L+G I
Sbjct: 551 QLDLSQNQLSGEI 563

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 28 LEQERSALLQLKHFFNDSKHLHY--WNDGENYSDCCQWEGVECN 69
          L  +R ALL  K   N         WN   + SD C W GV C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNP--SSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 96  LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSL 155
           L    Q LE L L  NN TG +       L+SL  L+ L L  N F+  I  +LG  ++L
Sbjct: 303 LVIQLQNLEILHLFSNNFTGKIPVA----LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358

Query: 156 KHLSLGTNELNGSI 169
             L L TN L G I
Sbjct: 359 TVLDLSTNNLTGEI 372

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 91  YMNASLFTPFQ-----QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI 145
           Y N S   P++      L  LDL  NN+TG + +     L +LKNL++L L  N  +  I
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS----LGNLKNLQYLFLYQNKLSGPI 276

Query: 146 FSSLGGLSSLKHLSLGTNELNGSI 169
             S+  L  L  L L  N L+G I
Sbjct: 277 PPSIFSLQKLISLDLSDNSLSGEI 300

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 33.6 bits (78), Expect = 0.004
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 6/43 (13%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN 143
             LE LDLS N IT       L  LS+L NL+ LDL+ N   +
Sbjct: 1   TNLETLDLSNNQITD------LPPLSNLPNLETLDLSGNKITD 37

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PLN03150	623	hypothetical protein; Provisional	99.79
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.79
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.34
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.16
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.99
PLN03150	623	hypothetical protein; Provisional	98.99
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.73
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.66
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.65
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.63
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.63
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.58
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.52
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.41
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.38
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.37
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.3
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.28
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.27
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.25
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.19
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.19
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.14
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.11
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.09
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.03
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.92
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.82
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.78
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.62
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.48
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.43
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.31
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.24
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.07
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.06
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.06
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.98
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.96
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.89
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.52
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.51
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.3
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.27
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.13
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.95
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.9
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.79
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.13
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.05
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.64
smart00370	26	LRR Leucine-rich repeats, outliers.	94.64
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.52
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.24
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.05
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.98
smart00370	26	LRR Leucine-rich repeats, outliers.	93.98
PRK15386	426	type III secretion protein GogB; Provisional	93.73
PRK15386	426	type III secretion protein GogB; Provisional	92.23
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.09
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.94
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	89.26
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	89.12
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	86.71
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.68
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	86.63

>PLN03150 hypothetical protein; Provisional

Probab=99.79  E-value=7.2e-19  Score=151.59  Aligned_cols=139  Identities=31%  Similarity=0.430  Sum_probs=115.1

Q ss_pred             CCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccceEecCCC----CcEEEEEcCCCCCCCCccccCcccccCC
Q 048732           25 EGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTT----GRVIKLDLAFRKRDSAEWYMNASLFTPF  100 (174)
Q Consensus        25 ~~~~~~~~~~L~~~~~~~~~~~~~~~W~~~~~~~~~C~w~gv~c~~~~----~~v~~L~L~~n~~~~g~~~~~~~~~~~l  100 (174)
                      ..+...|..+|..+|+.+..+.. .+|.+..|....|.|.||.|....    ..|+.|+|++|++. |.+   +..+..+
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~-~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~-g~i---p~~i~~L  441 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR-FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR-GFI---PNDISKL  441 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc-CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCcc-ccC---CHHHhCC
Confidence            34566799999999999875432 479763221122379999995311    25999999999876 432   6678999


Q ss_pred             CCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCCC
Q 048732          101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIE  172 (174)
Q Consensus       101 ~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~  172 (174)
                      ++|+.|+|++|.+.|.+|..    ++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|.+
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  509 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA  509 (623)
T ss_pred             CCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence            99999999999999999988    999999999999999999999999999999999999999999999963

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.79  E-value=1e-18  Score=157.06  Aligned_cols=133  Identities=32%  Similarity=0.568  Sum_probs=97.5

Q ss_pred             CHHHHHHHHHHHhhCCCCCCC-CCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCCCCccccCcccccCCCCCCEE
Q 048732           28 LEQERSALLQLKHFFNDSKHL-HYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFL  106 (174)
Q Consensus        28 ~~~~~~~L~~~~~~~~~~~~~-~~W~~~~~~~~~C~w~gv~c~~~~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L  106 (174)
                      .+.|..+|++||+.+.++... .+|+..   .++|.|.||.|+. .++|+.|+|++|++. +.   .+..|..+++|+.|
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~---~~~c~w~gv~c~~-~~~v~~L~L~~~~i~-~~---~~~~~~~l~~L~~L   98 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSS---ADVCLWQGITCNN-SSRVVSIDLSGKNIS-GK---ISSAIFRLPYIQTI   98 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCC---CCCCcCcceecCC-CCcEEEEEecCCCcc-cc---CChHHhCCCCCCEE
Confidence            458999999999999877554 899764   6899999999986 579999999998776 22   24556777777777


Q ss_pred             eCcCCccccccCcchhhhcCC----------------------CCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCc
Q 048732          107 DLSGNNITGCVQNEGLDRLSS----------------------LKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNE  164 (174)
Q Consensus       107 ~ls~N~l~g~~p~~~~~~~~~----------------------l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~  164 (174)
                      ++++|.+.+.+|...   +..                      +++|++|++++|.+++.+|..++.+++|++|++++|.
T Consensus        99 ~Ls~n~~~~~ip~~~---~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  175 (968)
T PLN00113         99 NLSNNQLSGPIPDDI---FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV  175 (968)
T ss_pred             ECCCCccCCcCChHH---hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence            777777777776542   223                      4555555555555666666667777777777777777


Q ss_pred             ccccCCC
Q 048732          165 LNGSIDI  171 (174)
Q Consensus       165 l~g~iP~  171 (174)
                      +++.+|.
T Consensus       176 l~~~~p~  182 (968)
T PLN00113        176 LVGKIPN  182 (968)
T ss_pred             ccccCCh
Confidence            7776664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.34  E-value=1.4e-12  Score=117.70  Aligned_cols=76  Identities=30%  Similarity=0.484  Sum_probs=59.6

Q ss_pred             cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCCCC
Q 048732           94 ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIEG  173 (174)
Q Consensus        94 ~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~  173 (174)
                      |..+..+++|+.|++++|.+++.+|..    +..+++|+.||+++|+++|.+|..+..+++|+.|++++|+++|.+|..|
T Consensus       516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~  591 (968)
T PLN00113        516 PDELSSCKKLVSLDLSHNQLSGQIPAS----FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG  591 (968)
T ss_pred             ChHHcCccCCCEEECCCCcccccCChh----HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcc
Confidence            445667777777777777777777776    7778888888888888888888888888888888888888888888765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.16  E-value=3e-11  Score=73.47  Aligned_cols=61  Identities=36%  Similarity=0.501  Sum_probs=49.8

Q ss_pred             CCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcc
Q 048732          101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNEL  165 (174)
Q Consensus       101 ~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l  165 (174)
                      ++|++|++++|+++ .+|...   |..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~---f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDS---FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTT---TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHH---HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46888899999888 455433   88899999999999999866667888999999999998875

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.12  E-value=5.9e-12  Score=91.43  Aligned_cols=88  Identities=28%  Similarity=0.459  Sum_probs=77.6

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      ..++++|.|++|++.    .++| .+..+.+|+.|++++|++. .+|..    ++.+++|+.|+++.|++. .+|..|+.
T Consensus        32 ~s~ITrLtLSHNKl~----~vpp-nia~l~nlevln~~nnqie-~lp~~----issl~klr~lnvgmnrl~-~lprgfgs  100 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT----VVPP-NIAELKNLEVLNLSNNQIE-ELPTS----ISSLPKLRILNVGMNRLN-ILPRGFGS  100 (264)
T ss_pred             hhhhhhhhcccCcee----ecCC-cHHHhhhhhhhhcccchhh-hcChh----hhhchhhhheecchhhhh-cCccccCC
Confidence            468999999999987    4444 5899999999999999998 78888    999999999999999998 89999999


Q ss_pred             CCCCCEEEccCCccc-ccCC
Q 048732          152 LSSLKHLSLGTNELN-GSID  170 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~-g~iP  170 (174)
                      ++.|++|||+.|++. ..+|
T Consensus       101 ~p~levldltynnl~e~~lp  120 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLP  120 (264)
T ss_pred             CchhhhhhccccccccccCC
Confidence            999999999999886 3444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.99  E-value=4.8e-10  Score=68.12  Aligned_cols=60  Identities=37%  Similarity=0.526  Sum_probs=53.8

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHF  141 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l  141 (174)
                      +++.|++++|++.    .+++..|..+++|++|++++|.++...|..    |.++++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~----~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLT----EIPPDSFSNLPNLETLDLSNNNLTSIPPDA----FSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTES----EECTTTTTTGTTESEEEETSSSESEEETTT----TTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCC----ccCHHHHcCCCCCCEeEccCCccCccCHHH----HcCCCCCCEEeCcCCcC
Confidence            6889999999888    788889999999999999999998555555    99999999999999985

...

>PLN03150 hypothetical protein; Provisional

Probab=98.99  E-value=7.8e-10  Score=95.87  Aligned_cols=91  Identities=22%  Similarity=0.282  Sum_probs=78.7

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|+|++|++. |.   .|..+..+++|+.|++++|.++|.+|..    ++++++|+.|+|++|.++|.+|..++.+
T Consensus       442 ~~L~~L~Ls~N~l~-g~---iP~~~~~l~~L~~LdLs~N~lsg~iP~~----l~~L~~L~~L~Ls~N~l~g~iP~~l~~~  513 (623)
T PLN03150        442 RHLQSINLSGNSIR-GN---IPPSLGSITSLEVLDLSYNSFNGSIPES----LGQLTSLRILNLNGNSLSGRVPAALGGR  513 (623)
T ss_pred             CCCCEEECCCCccc-Cc---CChHHhCCCCCCEEECCCCCCCCCCchH----HhcCCCCCEEECcCCcccccCChHHhhc
Confidence            57899999999886 33   2667899999999999999999999998    9999999999999999999999988764


Q ss_pred             -CCCCEEEccCCcccccCCC
Q 048732          153 -SSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       153 -~~L~~L~Ls~N~l~g~iP~  171 (174)
                       .++..+++.+|.....+|.
T Consensus       514 ~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        514 LLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             cccCceEEecCCccccCCCC
Confidence             4678999999976544553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.73  E-value=5e-10  Score=94.19  Aligned_cols=90  Identities=32%  Similarity=0.438  Sum_probs=50.3

Q ss_pred             EEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchh---------------------hhcCCCCCCCE
Q 048732           75 VIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGL---------------------DRLSSLKNLKF  133 (174)
Q Consensus        75 v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~---------------------~~~~~l~~L~~  133 (174)
                      +..|+|++|.|.    ++.++.+...++|++|+|++|+++ .+++..+                     ..|..+++|+.
T Consensus       295 L~~L~lS~NaI~----rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~  369 (873)
T KOG4194|consen  295 LEQLDLSYNAIQ----RIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK  369 (873)
T ss_pred             hhhhccchhhhh----eeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence            344455555544    444555555566666666666665 3333220                     11455666666


Q ss_pred             EeccCCCCCCcccc---ccCCCCCCCEEEccCCcccccCC
Q 048732          134 LDLTLNHFNNSIFS---SLGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       134 L~ls~N~l~g~~p~---~l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      |||++|.+++.|.+   .|.+|++|+.|++.+|++. .||
T Consensus       370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~  408 (873)
T KOG4194|consen  370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIP  408 (873)
T ss_pred             hcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecc
Confidence            66666666666554   3556666777777777665 344

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.66  E-value=1.3e-08  Score=74.65  Aligned_cols=83  Identities=29%  Similarity=0.369  Sum_probs=35.2

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhc-CCCCCCCEEeccCCCCCCcc-ccccC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRL-SSLKNLKFLDLTLNHFNNSI-FSSLG  150 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~-~~l~~L~~L~ls~N~l~g~~-p~~l~  150 (174)
                      .+++.|+|++|++.    .+  +.+..++.|+.|++++|+++. +++.    + ..+++|+.|++++|++...- -..+.
T Consensus        42 ~~L~~L~Ls~N~I~----~l--~~l~~L~~L~~L~L~~N~I~~-i~~~----l~~~lp~L~~L~L~~N~I~~l~~l~~L~  110 (175)
T PF14580_consen   42 DKLEVLDLSNNQIT----KL--EGLPGLPRLKTLDLSNNRISS-ISEG----LDKNLPNLQELYLSNNKISDLNELEPLS  110 (175)
T ss_dssp             TT--EEE-TTS--S--------TT----TT--EEE--SS---S--CHH----HHHH-TT--EEE-TTS---SCCCCGGGG
T ss_pred             cCCCEEECCCCCCc----cc--cCccChhhhhhcccCCCCCCc-cccc----hHHhCCcCCEEECcCCcCCChHHhHHHH
Confidence            36788888888776    33  236678888888888888873 4332    3 35788888888888886321 13466


Q ss_pred             CCCCCCEEEccCCccc
Q 048732          151 GLSSLKHLSLGTNELN  166 (174)
Q Consensus       151 ~l~~L~~L~Ls~N~l~  166 (174)
                      .+++|++|+|.+|.++
T Consensus       111 ~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen  111 SLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             G-TT--EEE-TT-GGG
T ss_pred             cCCCcceeeccCCccc
Confidence            7888888888888876

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.65  E-value=5.5e-08  Score=54.85  Aligned_cols=40  Identities=43%  Similarity=0.852  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHhhCC-CCCCC-CCCCCCCCCCCCccccceEec
Q 048732           29 EQERSALLQLKHFFN-DSKHL-HYWNDGENYSDCCQWEGVECN   69 (174)
Q Consensus        29 ~~~~~~L~~~~~~~~-~~~~~-~~W~~~~~~~~~C~w~gv~c~   69 (174)
                      ++|.++|++||+.+. ++... .+|+... ..++|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence            579999999999999 45444 9999841 2689999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.63  E-value=5.4e-09  Score=88.07  Aligned_cols=85  Identities=29%  Similarity=0.303  Sum_probs=61.6

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .+.+|+|..|++.    .+....+.+|+.|+.|++|+|.|...-+..    |...++|++|||++|+++.-.+..|..|.
T Consensus       270 kme~l~L~~N~l~----~vn~g~lfgLt~L~~L~lS~NaI~rih~d~----WsftqkL~~LdLs~N~i~~l~~~sf~~L~  341 (873)
T KOG4194|consen  270 KMEHLNLETNRLQ----AVNEGWLFGLTSLEQLDLSYNAIQRIHIDS----WSFTQKLKELDLSSNRITRLDEGSFRVLS  341 (873)
T ss_pred             ccceeecccchhh----hhhcccccccchhhhhccchhhhheeecch----hhhcccceeEeccccccccCChhHHHHHH
Confidence            5778888888877    555666778888999999999888666666    88888888888888888854455555555


Q ss_pred             CCCEEEccCCccc
Q 048732          154 SLKHLSLGTNELN  166 (174)
Q Consensus       154 ~L~~L~Ls~N~l~  166 (174)
                      .|+.|+|++|.++
T Consensus       342 ~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  342 QLEELNLSHNSID  354 (873)
T ss_pred             HhhhhcccccchH
Confidence            5555555555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.63  E-value=4.5e-09  Score=84.80  Aligned_cols=87  Identities=29%  Similarity=0.368  Sum_probs=68.0

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccC-CCCCCccccccC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTL-NHFNNSIFSSLG  150 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~-N~l~g~~p~~l~  150 (174)
                      +...++|+|..|+|.    .+++..|..+++|+.|||++|.|+-.-|..    |.++++|..|-+.+ |+|+...-..|+
T Consensus        66 P~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A----F~GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   66 PPETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNNISFIAPDA----FKGLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             CCcceEEEeccCCcc----cCChhhccchhhhceecccccchhhcChHh----hhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence            457899999999998    789999999999999999999999666666    88888877775544 888843334677


Q ss_pred             CCCCCCEEEccCCccc
Q 048732          151 GLSSLKHLSLGTNELN  166 (174)
Q Consensus       151 ~l~~L~~L~Ls~N~l~  166 (174)
                      +|.+|+.|.+.-|++.
T Consensus       138 gL~slqrLllNan~i~  153 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHIN  153 (498)
T ss_pred             hHHHHHHHhcChhhhc
Confidence            7766666666655554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.60  E-value=3e-08  Score=72.81  Aligned_cols=81  Identities=33%  Similarity=0.445  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCCCCCCCccccCccccc-CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccccc-C
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFT-PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSL-G  150 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l-~  150 (174)
                      .++++|+|++|++.    .+  +.++ .+.+|+.|++++|.++ .++.     +..+++|++|++++|+++ .+...+ .
T Consensus        19 ~~~~~L~L~~n~I~----~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~-----l~~L~~L~~L~L~~N~I~-~i~~~l~~   85 (175)
T PF14580_consen   19 VKLRELNLRGNQIS----TI--ENLGATLDKLEVLDLSNNQIT-KLEG-----LPGLPRLKTLDLSNNRIS-SISEGLDK   85 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---TT---------TT--EEE--SS----S-CHHHHH
T ss_pred             cccccccccccccc----cc--cchhhhhcCCCEEECCCCCCc-cccC-----ccChhhhhhcccCCCCCC-ccccchHH
Confidence            46789999999886    33  2244 5889999999999998 4543     778999999999999999 454444 4


Q ss_pred             CCCCCCEEEccCCccc
Q 048732          151 GLSSLKHLSLGTNELN  166 (174)
Q Consensus       151 ~l~~L~~L~Ls~N~l~  166 (174)
                      .+++|+.|++++|+|.
T Consensus        86 ~lp~L~~L~L~~N~I~  101 (175)
T PF14580_consen   86 NLPNLQELYLSNNKIS  101 (175)
T ss_dssp             H-TT--EEE-TTS---
T ss_pred             hCCcCCEEECcCCcCC
Confidence            6899999999999986

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.58  E-value=1e-09  Score=79.81  Aligned_cols=92  Identities=26%  Similarity=0.387  Sum_probs=57.5

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCcccc-ccCcch-------------------hhhcCCCCCCCE
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITG-CVQNEG-------------------LDRLSSLKNLKF  133 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g-~~p~~~-------------------~~~~~~l~~L~~  133 (174)
                      .++.|++.-|++.     +.|..|+.++.|+.||+.+|++.. .+|..-                   ...++++++|+.
T Consensus        80 klr~lnvgmnrl~-----~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqi  154 (264)
T KOG0617|consen   80 KLRILNVGMNRLN-----ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQI  154 (264)
T ss_pred             hhhheecchhhhh-----cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeE
Confidence            3455555555443     335556666666666666666542 233220                   011667777888


Q ss_pred             EeccCCCCCCccccccCCCCCCCEEEccCCcccccCCCC
Q 048732          134 LDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIE  172 (174)
Q Consensus       134 L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~  172 (174)
                      |.+..|.+- ++|..++.++.|+.|++.+|+++ .+|+|
T Consensus       155 l~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppe  191 (264)
T KOG0617|consen  155 LSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPE  191 (264)
T ss_pred             EeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChh
Confidence            877777776 67777888888888888888877 46654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.52  E-value=9.2e-09  Score=90.22  Aligned_cols=83  Identities=30%  Similarity=0.403  Sum_probs=54.5

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      ..+++.|+|++|++.    .++...+.+++.|++|++|+|.++ .+|..    +..++.|++|....|++. .+| .+..
T Consensus       382 ~~hLKVLhLsyNrL~----~fpas~~~kle~LeeL~LSGNkL~-~Lp~t----va~~~~L~tL~ahsN~l~-~fP-e~~~  450 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLN----SFPASKLRKLEELEELNLSGNKLT-TLPDT----VANLGRLHTLRAHSNQLL-SFP-ELAQ  450 (1081)
T ss_pred             ccceeeeeecccccc----cCCHHHHhchHHhHHHhcccchhh-hhhHH----HHhhhhhHHHhhcCCcee-ech-hhhh
Confidence            368999999999887    677888899999999999999998 67755    334444444444444443 333 3344


Q ss_pred             CCCCCEEEccCCcc
Q 048732          152 LSSLKHLSLGTNEL  165 (174)
Q Consensus       152 l~~L~~L~Ls~N~l  165 (174)
                      ++.|+++|++.|++
T Consensus       451 l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  451 LPQLKVLDLSCNNL  464 (1081)
T ss_pred             cCcceEEecccchh
Confidence            44444444444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.52  E-value=1.3e-07  Score=53.58  Aligned_cols=37  Identities=35%  Similarity=0.522  Sum_probs=22.5

Q ss_pred             CCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732          129 KNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       129 ~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      ++|++|++++|+++ .+|..++.|++|+.|++++|+|+
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35666666666666 45555666666666666666665

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.41  E-value=2.5e-07  Score=81.64  Aligned_cols=42  Identities=26%  Similarity=0.157  Sum_probs=35.2

Q ss_pred             CCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732          129 KNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       129 ~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      .+|+.|++++|+++ .+|..+..+++|+.|+|++|+|+|.+|.
T Consensus       422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            35677888888887 7888899999999999999999987654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.38  E-value=5.4e-08  Score=83.06  Aligned_cols=82  Identities=29%  Similarity=0.349  Sum_probs=41.5

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.||||+|++.    .. |..+..-+++-.|+||+|+|. .||...   |.++..|-.||||+|++. .+|+++..+.
T Consensus       104 dLt~lDLShNqL~----Ev-P~~LE~AKn~iVLNLS~N~Ie-tIPn~l---finLtDLLfLDLS~NrLe-~LPPQ~RRL~  173 (1255)
T KOG0444|consen  104 DLTILDLSHNQLR----EV-PTNLEYAKNSIVLNLSYNNIE-TIPNSL---FINLTDLLFLDLSNNRLE-MLPPQIRRLS  173 (1255)
T ss_pred             cceeeecchhhhh----hc-chhhhhhcCcEEEEcccCccc-cCCchH---HHhhHhHhhhccccchhh-hcCHHHHHHh
Confidence            4555566655554    12 222344444555555555554 344432   445555555555555554 4555555555


Q ss_pred             CCCEEEccCCcc
Q 048732          154 SLKHLSLGTNEL  165 (174)
Q Consensus       154 ~L~~L~Ls~N~l  165 (174)
                      .|+.|+|++|.+
T Consensus       174 ~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  174 MLQTLKLSNNPL  185 (1255)
T ss_pred             hhhhhhcCCChh
Confidence            555555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.37  E-value=9.3e-08  Score=77.64  Aligned_cols=41  Identities=37%  Similarity=0.598  Sum_probs=39.7

Q ss_pred             cCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732          125 LSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       125 ~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      +.+|.+|.+|||.+|.+. ++|+.++++++|++|++++|.|.
T Consensus       501 l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  501 LKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            789999999999999998 89999999999999999999998

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.34  E-value=6.1e-07  Score=50.80  Aligned_cols=37  Identities=49%  Similarity=0.576  Sum_probs=30.7

Q ss_pred             CCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCC
Q 048732          101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN  142 (174)
Q Consensus       101 ~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~  142 (174)
                      ++|++|++++|+++ .+|+.    ++++++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~----l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPE----LSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGH----GTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCch----HhCCCCCCEEEecCCCCC
Confidence            46899999999998 57776    889999999999999998

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.30  E-value=6.4e-08  Score=78.55  Aligned_cols=45  Identities=29%  Similarity=0.424  Sum_probs=37.5

Q ss_pred             cCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732          125 LSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       125 ~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      ..+++++.+||+..|+++ ..|+.+.-+++|..||+++|.|++ +|.
T Consensus       248 ~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~  292 (565)
T KOG0472|consen  248 LKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPY  292 (565)
T ss_pred             hcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCc
Confidence            457888888999999988 888888888889999999998886 443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.28  E-value=1.3e-07  Score=80.73  Aligned_cols=90  Identities=24%  Similarity=0.294  Sum_probs=65.0

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccc-cCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS-LGG  151 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~-l~~  151 (174)
                      ++++.+++..|++....  + |..+..|..|+.||||.|++. +.|..    +..-+++-+|+||+|++. .||.. |-+
T Consensus        78 p~LRsv~~R~N~LKnsG--i-P~diF~l~dLt~lDLShNqL~-EvP~~----LE~AKn~iVLNLS~N~Ie-tIPn~lfin  148 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSG--I-PTDIFRLKDLTILDLSHNQLR-EVPTN----LEYAKNSIVLNLSYNNIE-TIPNSLFIN  148 (1255)
T ss_pred             hhhHHHhhhccccccCC--C-Cchhcccccceeeecchhhhh-hcchh----hhhhcCcEEEEcccCccc-cCCchHHHh
Confidence            35666677777666433  2 444667888888888888887 67776    777788888888888887 66654 457


Q ss_pred             CCCCCEEEccCCcccccCCCC
Q 048732          152 LSSLKHLSLGTNELNGSIDIE  172 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g~iP~~  172 (174)
                      ++-|-.||||+|++. .+|++
T Consensus       149 LtDLLfLDLS~NrLe-~LPPQ  168 (1255)
T KOG0444|consen  149 LTDLLFLDLSNNRLE-MLPPQ  168 (1255)
T ss_pred             hHhHhhhccccchhh-hcCHH
Confidence            788888888888887 56653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.27  E-value=5.3e-07  Score=71.33  Aligned_cols=94  Identities=28%  Similarity=0.298  Sum_probs=44.8

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccc
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSS  148 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~  148 (174)
                      ..++.|++++|++...........+..+++|+.|++++|.+++.........+..+++|+.|++++|.+++.    ++..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            355666666665542111001122344455666666666655321110011134445666666666666533    2233


Q ss_pred             cCCCCCCCEEEccCCccc
Q 048732          149 LGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       149 l~~l~~L~~L~Ls~N~l~  166 (174)
                      +..+++|++|++++|+++
T Consensus       217 ~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         217 LASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hcccCCCCEEecCCCcCc
Confidence            445566666666666655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.25  E-value=7.6e-08  Score=67.62  Aligned_cols=87  Identities=24%  Similarity=0.277  Sum_probs=73.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      -+++.++|++|.+.    .+++..-..++.++.|++++|.++ .+|.+    +..++.|+.|+++.|.+. ..|.-+..|
T Consensus        53 ~el~~i~ls~N~fk----~fp~kft~kf~t~t~lNl~~neis-dvPeE----~Aam~aLr~lNl~~N~l~-~~p~vi~~L  122 (177)
T KOG4579|consen   53 YELTKISLSDNGFK----KFPKKFTIKFPTATTLNLANNEIS-DVPEE----LAAMPALRSLNLRFNPLN-AEPRVIAPL  122 (177)
T ss_pred             ceEEEEecccchhh----hCCHHHhhccchhhhhhcchhhhh-hchHH----HhhhHHhhhcccccCccc-cchHHHHHH
Confidence            47899999999887    566665566778999999999998 79988    999999999999999998 677777779


Q ss_pred             CCCCEEEccCCcccccCC
Q 048732          153 SSLKHLSLGTNELNGSID  170 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP  170 (174)
                      .+|..|+..+|.+. .||
T Consensus       123 ~~l~~Lds~~na~~-eid  139 (177)
T KOG4579|consen  123 IKLDMLDSPENARA-EID  139 (177)
T ss_pred             HhHHHhcCCCCccc-cCc
Confidence            99999999888765 454

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.19  E-value=5.3e-07  Score=73.07  Aligned_cols=86  Identities=27%  Similarity=0.271  Sum_probs=64.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|+|++|++.    .+.+..|..+..+++|.|..|++. .+....   |.++..|++|+|++|+++-.-|.+|..+
T Consensus       274 ~~L~~lnlsnN~i~----~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~---f~~ls~L~tL~L~~N~it~~~~~aF~~~  345 (498)
T KOG4237|consen  274 PNLRKLNLSNNKIT----RIEDGAFEGAAELQELYLTRNKLE-FVSSGM---FQGLSGLKTLSLYDNQITTVAPGAFQTL  345 (498)
T ss_pred             ccceEeccCCCccc----hhhhhhhcchhhhhhhhcCcchHH-HHHHHh---hhccccceeeeecCCeeEEEeccccccc
Confidence            46777888888776    556677777788888888888776 333333   7788888888888888887777788888


Q ss_pred             CCCCEEEccCCccc
Q 048732          153 SSLKHLSLGTNELN  166 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~  166 (174)
                      .+|..|+|-.|.+.
T Consensus       346 ~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  346 FSLSTLNLLSNPFN  359 (498)
T ss_pred             ceeeeeehccCccc
Confidence            88888888777653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.19  E-value=6.2e-07  Score=70.97  Aligned_cols=93  Identities=23%  Similarity=0.227  Sum_probs=50.3

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCC-CCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccc
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPF-QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSS  148 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l-~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~  148 (174)
                      ++++|++++|++...........+..+ ++|+.|++++|.+++.........+..+++|++|++++|.+++.    ++..
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            366666666654421111111223444 66777777777766432221112255666777777777777632    3334


Q ss_pred             cCCCCCCCEEEccCCccc
Q 048732          149 LGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       149 l~~l~~L~~L~Ls~N~l~  166 (174)
                      +..+++|++|++++|.++
T Consensus       189 l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         189 LKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHhCCCCCEEeccCCccC
Confidence            455567777777777765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.15  E-value=3.4e-05  Score=68.37  Aligned_cols=37  Identities=8%  Similarity=0.062  Sum_probs=28.6

Q ss_pred             CCCCCHHHHHHHHHHHhhCCCCCCCC----CCCCCCCCCCCccc
Q 048732           24 SEGCLEQERSALLQLKHFFNDSKHLH----YWNDGENYSDCCQW   63 (174)
Q Consensus        24 ~~~~~~~~~~~L~~~~~~~~~~~~~~----~W~~~~~~~~~C~w   63 (174)
                      .....++|...++++.+.+..|....    +|++.   +++|.-
T Consensus        57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~---~~fc~~   97 (754)
T PRK15370         57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGA---DQYCIL   97 (754)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCC---Cccccc
Confidence            56678899999999999998876553    48874   678843

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.14  E-value=4.9e-07  Score=71.28  Aligned_cols=58  Identities=33%  Similarity=0.328  Sum_probs=36.2

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN  142 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~  142 (174)
                      .++++||++|.+.    .+ .++..-++.++.|++|+|.+. .+..     +..+++|+.||||+|.++
T Consensus       285 ~LtelDLS~N~I~----~i-DESvKL~Pkir~L~lS~N~i~-~v~n-----La~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  285 ELTELDLSGNLIT----QI-DESVKLAPKLRRLILSQNRIR-TVQN-----LAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hhhhccccccchh----hh-hhhhhhccceeEEecccccee-eehh-----hhhcccceEeecccchhH
Confidence            4567777777554    12 233455667777777777765 3322     556777777777777765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.11  E-value=6.4e-06  Score=72.91  Aligned_cols=87  Identities=21%  Similarity=0.232  Sum_probs=47.9

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhh----------hcC-----CCCCCCEEecc
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLD----------RLS-----SLKNLKFLDLT  137 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~----------~~~-----~l~~L~~L~ls  137 (174)
                      ..++.|+|++|++.    .++...   .++|+.|++++|.++ .+|.....          .+.     -..+|+.|+++
T Consensus       199 ~~L~~L~Ls~N~Lt----sLP~~l---~~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls  270 (754)
T PRK15370        199 EQITTLILDNNELK----SLPENL---QGNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLF  270 (754)
T ss_pred             cCCcEEEecCCCCC----cCChhh---ccCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHhCCCCEEECc
Confidence            45677777777665    333322   135555666655555 33432000          000     12357777777


Q ss_pred             CCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732          138 LNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       138 ~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      +|+++ .+|..+.  ++|+.|++++|+|++ +|.
T Consensus       271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~  300 (754)
T PRK15370        271 HNKIS-CLPENLP--EELRYLSVYDNSIRT-LPA  300 (754)
T ss_pred             CCccC-ccccccC--CCCcEEECCCCcccc-Ccc
Confidence            77776 4666543  467888888887774 553

>PLN03210 Resistant to P

Probab=98.09  E-value=1.1e-05  Score=74.66  Aligned_cols=89  Identities=21%  Similarity=0.175  Sum_probs=57.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|+++++++.    .+ +..+..+++|+.|+++++...+.+|.     ++.+++|+.|++++|.....+|..++.+
T Consensus       611 ~~L~~L~L~~s~l~----~L-~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        611 ENLVKLQMQGSKLE----KL-WDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             cCCcEEECcCcccc----cc-ccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhcc
Confidence            35666677666554    22 23356677777777777654445664     5667777777777766555677777777


Q ss_pred             CCCCEEEccCCcccccCCC
Q 048732          153 SSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP~  171 (174)
                      ++|+.|++++|..-+.+|.
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCC
Confidence            7777777777654445654

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.06  E-value=9.3e-07  Score=77.99  Aligned_cols=86  Identities=29%  Similarity=0.424  Sum_probs=72.2

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .+.+||+++|++.    .+ |..+..+.+|+.|+++.|.+. ..|..    ..++.+|+++.|..|++. ..|..+..++
T Consensus        46 ~L~~l~lsnn~~~----~f-p~~it~l~~L~~ln~s~n~i~-~vp~s----~~~~~~l~~lnL~~n~l~-~lP~~~~~lk  114 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS----SF-PIQITLLSHLRQLNLSRNYIR-SVPSS----CSNMRNLQYLNLKNNRLQ-SLPASISELK  114 (1081)
T ss_pred             eeEEeeccccccc----cC-CchhhhHHHHhhcccchhhHh-hCchh----hhhhhcchhheeccchhh-cCchhHHhhh
Confidence            3899999999776    23 334677889999999999987 67766    889999999999999998 8999999999


Q ss_pred             CCCEEEccCCcccccCCC
Q 048732          154 SLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g~iP~  171 (174)
                      +|++|+++.|+|. .+|.
T Consensus       115 nl~~LdlS~N~f~-~~Pl  131 (1081)
T KOG0618|consen  115 NLQYLDLSFNHFG-PIPL  131 (1081)
T ss_pred             cccccccchhccC-CCch
Confidence            9999999999987 5663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.03  E-value=3.1e-06  Score=69.36  Aligned_cols=87  Identities=32%  Similarity=0.446  Sum_probs=68.7

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCC-CCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQ-QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .++.+++.+|++.    .+++ ....+. +|+.|++++|.+. .+|..    +..+++|+.|+++.|+++ .+|...+.+
T Consensus       117 ~l~~L~l~~n~i~----~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~----~~~l~~L~~L~l~~N~l~-~l~~~~~~~  185 (394)
T COG4886         117 NLTSLDLDNNNIT----DIPP-LIGLLKSNLKELDLSDNKIE-SLPSP----LRNLPNLKNLDLSFNDLS-DLPKLLSNL  185 (394)
T ss_pred             ceeEEecCCcccc----cCcc-ccccchhhcccccccccchh-hhhhh----hhccccccccccCCchhh-hhhhhhhhh
Confidence            5788888888776    4433 345553 8999999999987 55433    789999999999999998 777766688


Q ss_pred             CCCCEEEccCCcccccCCCC
Q 048732          153 SSLKHLSLGTNELNGSIDIE  172 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP~~  172 (174)
                      +.|+.|++++|+++ .||..
T Consensus       186 ~~L~~L~ls~N~i~-~l~~~  204 (394)
T COG4886         186 SNLNNLDLSGNKIS-DLPPE  204 (394)
T ss_pred             hhhhheeccCCccc-cCchh
Confidence            89999999999998 57653

>PLN03210 Resistant to P

Probab=97.92  E-value=3.2e-05  Score=71.77  Aligned_cols=88  Identities=20%  Similarity=0.125  Sum_probs=63.2

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|+|++++.. .  .+ | .+..+++|+.|++++|.....+|..    +..+++|+.|++++|..-+.+|..+ .+
T Consensus       634 ~~Lk~L~Ls~~~~l-~--~i-p-~ls~l~~Le~L~L~~c~~L~~lp~s----i~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        634 TGLRNIDLRGSKNL-K--EI-P-DLSMATNLETLKLSDCSSLVELPSS----IQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             CCCCEEECCCCCCc-C--cC-C-ccccCCcccEEEecCCCCccccchh----hhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            47888999876543 1  12 3 3677889999999988766678877    8888889999988865545777655 56


Q ss_pred             CCCCEEEccCCcccccCC
Q 048732          153 SSLKHLSLGTNELNGSID  170 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP  170 (174)
                      ++|+.|++++|...+.+|
T Consensus       704 ~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             CCCCEEeCCCCCCccccc
Confidence            777777777765544444

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.89  E-value=7.3e-07  Score=75.18  Aligned_cols=64  Identities=25%  Similarity=0.321  Sum_probs=49.7

Q ss_pred             ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732           97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus        97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      ++.+.+|+.|.+..|.+. .+|++    +..|+ |..||+|.|+++ .||-.|.+|+.|++|-|.+|.++.
T Consensus       185 l~~l~slr~l~vrRn~l~-~lp~E----l~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  185 LGYLTSLRDLNVRRNHLE-DLPEE----LCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhHHHHHHHHHhhhhhh-hCCHH----HhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            455566666666666655 34544    55555 899999999999 899999999999999999999883

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.86  E-value=2.9e-05  Score=68.85  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=17.3

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccc
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNIT  114 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~  114 (174)
                      +++.|++++|++.    .++.    .+++|++|++++|+++
T Consensus       223 ~L~~L~L~~N~Lt----~LP~----lp~~Lk~LdLs~N~Lt  255 (788)
T PRK15387        223 HITTLVIPDNNLT----SLPA----LPPELRTLEVSGNQLT  255 (788)
T ss_pred             CCCEEEccCCcCC----CCCC----CCCCCcEEEecCCccC
Confidence            4556666666554    2221    1355666666666555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.82  E-value=6.6e-06  Score=73.96  Aligned_cols=88  Identities=27%  Similarity=0.336  Sum_probs=72.3

Q ss_pred             CcEEEEEcCCCC--CCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccC
Q 048732           73 GRVIKLDLAFRK--RDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG  150 (174)
Q Consensus        73 ~~v~~L~L~~n~--~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~  150 (174)
                      ..+++|-+..|.  +.    .++.+.|..++.|..||+++|.--+.+|..    ++.+-+|++|+++...++ .+|..++
T Consensus       545 ~~L~tLll~~n~~~l~----~is~~ff~~m~~LrVLDLs~~~~l~~LP~~----I~~Li~LryL~L~~t~I~-~LP~~l~  615 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLL----EISGEFFRSLPLLRVLDLSGNSSLSKLPSS----IGELVHLRYLDLSDTGIS-HLPSGLG  615 (889)
T ss_pred             CccceEEEeecchhhh----hcCHHHHhhCcceEEEECCCCCccCcCChH----HhhhhhhhcccccCCCcc-ccchHHH
Confidence            357777777764  33    344556888999999999998877789988    999999999999999999 8999999


Q ss_pred             CCCCCCEEEccCCcccccC
Q 048732          151 GLSSLKHLSLGTNELNGSI  169 (174)
Q Consensus       151 ~l~~L~~L~Ls~N~l~g~i  169 (174)
                      +|+.|.+||+..+.....+
T Consensus       616 ~Lk~L~~Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  616 NLKKLIYLNLEVTGRLESI  634 (889)
T ss_pred             HHHhhheeccccccccccc
Confidence            9999999999987654333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.78  E-value=6.3e-06  Score=65.12  Aligned_cols=62  Identities=34%  Similarity=0.426  Sum_probs=53.1

Q ss_pred             cCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732           98 TPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus        98 ~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      ...+.|+++|+|+|.++ .+.+.    ..-+|.++.|++|+|.+. .+.. +..+++|+.|||++|.++
T Consensus       281 dTWq~LtelDLS~N~I~-~iDES----vKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDES----VKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             chHhhhhhccccccchh-hhhhh----hhhccceeEEecccccee-eehh-hhhcccceEeecccchhH
Confidence            34567999999999998 67776    788999999999999998 4433 888999999999999876

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.62  E-value=2.7e-06  Score=71.79  Aligned_cols=78  Identities=29%  Similarity=0.397  Sum_probs=35.1

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.+||+.|++.    .+ |..+..|+ |+.|-+++|+++ .+|+.    ++.++.|..||.+.|.+. .+|..++++.
T Consensus       122 ~lt~l~ls~NqlS----~l-p~~lC~lp-Lkvli~sNNkl~-~lp~~----ig~~~tl~~ld~s~nei~-slpsql~~l~  189 (722)
T KOG0532|consen  122 ALTFLDLSSNQLS----HL-PDGLCDLP-LKVLIVSNNKLT-SLPEE----IGLLPTLAHLDVSKNEIQ-SLPSQLGYLT  189 (722)
T ss_pred             HHHHhhhccchhh----cC-ChhhhcCc-ceeEEEecCccc-cCCcc----cccchhHHHhhhhhhhhh-hchHHhhhHH
Confidence            3455566666554    12 22233333 455555555554 34444    444444444555554444 3444444443


Q ss_pred             CCCEEEccCC
Q 048732          154 SLKHLSLGTN  163 (174)
Q Consensus       154 ~L~~L~Ls~N  163 (174)
                      +|+.|++.+|
T Consensus       190 slr~l~vrRn  199 (722)
T KOG0532|consen  190 SLRDLNVRRN  199 (722)
T ss_pred             HHHHHHHhhh
Confidence            3333333333

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.48  E-value=1.6e-05  Score=56.10  Aligned_cols=86  Identities=21%  Similarity=0.240  Sum_probs=65.7

Q ss_pred             CcEEEEEcCCCCCCCCccccC--cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMN--ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG  150 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~--~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~  150 (174)
                      .....++|+.+++.    .+.  ...+.....|+.+++++|.+. .+|+..   -..++.++.|++++|.++ .+|..+.
T Consensus        27 kE~h~ldLssc~lm----~i~davy~l~~~~el~~i~ls~N~fk-~fp~kf---t~kf~t~t~lNl~~neis-dvPeE~A   97 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM----YIADAVYMLSKGYELTKISLSDNGFK-KFPKKF---TIKFPTATTLNLANNEIS-DVPEELA   97 (177)
T ss_pred             HHhhhcccccchhh----HHHHHHHHHhCCceEEEEecccchhh-hCCHHH---hhccchhhhhhcchhhhh-hchHHHh
Confidence            44556777777654    221  112345667888999999998 677661   345668999999999999 8999999


Q ss_pred             CCCCCCEEEccCCcccc
Q 048732          151 GLSSLKHLSLGTNELNG  167 (174)
Q Consensus       151 ~l~~L~~L~Ls~N~l~g  167 (174)
                      .++.|+.|+++.|.|..
T Consensus        98 am~aLr~lNl~~N~l~~  114 (177)
T KOG4579|consen   98 AMPALRSLNLRFNPLNA  114 (177)
T ss_pred             hhHHhhhcccccCcccc
Confidence            99999999999999874

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.47  E-value=3e-05  Score=63.60  Aligned_cols=80  Identities=33%  Similarity=0.393  Sum_probs=66.3

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.+++++|++.    .+ +..+..++.|+.|++++|.+. .+|..    .+.++.|+.|++++|+++ .+|.....+.
T Consensus       141 nL~~L~l~~N~i~----~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~----~~~~~~L~~L~ls~N~i~-~l~~~~~~~~  209 (394)
T COG4886         141 NLKELDLSDNKIE----SL-PSPLRNLPNLKNLDLSFNDLS-DLPKL----LSNLSNLNNLDLSGNKIS-DLPPEIELLS  209 (394)
T ss_pred             hcccccccccchh----hh-hhhhhccccccccccCCchhh-hhhhh----hhhhhhhhheeccCCccc-cCchhhhhhh
Confidence            7999999999876    22 234788999999999999998 66664    448899999999999998 7887766667


Q ss_pred             CCCEEEccCCc
Q 048732          154 SLKHLSLGTNE  164 (174)
Q Consensus       154 ~L~~L~Ls~N~  164 (174)
                      .|+.+.+++|+
T Consensus       210 ~L~~l~~~~N~  220 (394)
T COG4886         210 ALEELDLSNNS  220 (394)
T ss_pred             hhhhhhhcCCc
Confidence            79999999985

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.43  E-value=9.3e-06  Score=70.57  Aligned_cols=80  Identities=28%  Similarity=0.339  Sum_probs=45.6

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .+..|||++|++.    .  -+.+..+++|++|||++|.+. .+|...   ...+. |+.|.+.+|.++ .+ ..+.+|+
T Consensus       188 ale~LnLshNk~~----~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~---~~gc~-L~~L~lrnN~l~-tL-~gie~Lk  254 (1096)
T KOG1859|consen  188 ALESLNLSHNKFT----K--VDNLRRLPKLKHLDLSYNCLR-HVPQLS---MVGCK-LQLLNLRNNALT-TL-RGIENLK  254 (1096)
T ss_pred             Hhhhhccchhhhh----h--hHHHHhcccccccccccchhc-cccccc---hhhhh-heeeeecccHHH-hh-hhHHhhh
Confidence            5777888888765    1  124567788888888888887 455421   12222 555555555544 11 2244555


Q ss_pred             CCCEEEccCCccc
Q 048732          154 SLKHLSLGTNELN  166 (174)
Q Consensus       154 ~L~~L~Ls~N~l~  166 (174)
                      +|+.||++.|-|.
T Consensus       255 sL~~LDlsyNll~  267 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLS  267 (1096)
T ss_pred             hhhccchhHhhhh
Confidence            5555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.42  E-value=8.9e-05  Score=61.50  Aligned_cols=82  Identities=38%  Similarity=0.395  Sum_probs=60.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..+..+++..|++.    .+. ..+..+++|+.|++++|.|+...+      +..++.|+.|++++|.++ .+ ..+..+
T Consensus        95 ~~l~~l~l~~n~i~----~i~-~~l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N~i~-~~-~~~~~l  161 (414)
T KOG0531|consen   95 KSLEALDLYDNKIE----KIE-NLLSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGNLIS-DI-SGLESL  161 (414)
T ss_pred             cceeeeeccccchh----hcc-cchhhhhcchheeccccccccccc------hhhccchhhheeccCcch-hc-cCCccc
Confidence            56788888888776    221 125678889999999998885444      557777888888888887 33 335557


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      +.|+.+++++|+++.
T Consensus       162 ~~L~~l~l~~n~i~~  176 (414)
T KOG0531|consen  162 KSLKLLDLSYNRIVD  176 (414)
T ss_pred             hhhhcccCCcchhhh
Confidence            888888888888763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.31  E-value=0.0004  Score=51.94  Aligned_cols=82  Identities=26%  Similarity=0.187  Sum_probs=58.2

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc--ccCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS--SLGG  151 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~--~l~~  151 (174)
                      +...+||++|.+.    .  -+.|..++.|.+|.+++|+|+..-|..    -..+++|+.|.|.+|.+. .+-+  -+..
T Consensus        43 ~~d~iDLtdNdl~----~--l~~lp~l~rL~tLll~nNrIt~I~p~L----~~~~p~l~~L~LtnNsi~-~l~dl~pLa~  111 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR----K--LDNLPHLPRLHTLLLNNNRITRIDPDL----DTFLPNLKTLILTNNSIQ-ELGDLDPLAS  111 (233)
T ss_pred             ccceecccccchh----h--cccCCCccccceEEecCCcceeeccch----hhhccccceEEecCcchh-hhhhcchhcc
Confidence            5677888888765    1  234777888999999999998554543    345677888888888876 3222  3567


Q ss_pred             CCCCCEEEccCCccc
Q 048732          152 LSSLKHLSLGTNELN  166 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~  166 (174)
                      ++.|++|.+-+|+.+
T Consensus       112 ~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen  112 CPKLEYLTLLGNPVE  126 (233)
T ss_pred             CCccceeeecCCchh
Confidence            788888888888754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.24  E-value=0.00015  Score=65.35  Aligned_cols=84  Identities=29%  Similarity=0.315  Sum_probs=70.3

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      .+.+..|||++|.-. +.  + |..++.|-+|++|+++...+. .+|..    ++++..|.+||+..+.....+|.....
T Consensus       570 m~~LrVLDLs~~~~l-~~--L-P~~I~~Li~LryL~L~~t~I~-~LP~~----l~~Lk~L~~Lnl~~~~~l~~~~~i~~~  640 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSL-SK--L-PSSIGELVHLRYLDLSDTGIS-HLPSG----LGNLKKLIYLNLEVTGRLESIPGILLE  640 (889)
T ss_pred             CcceEEEECCCCCcc-Cc--C-ChHHhhhhhhhcccccCCCcc-ccchH----HHHHHhhheeccccccccccccchhhh
Confidence            457899999987433 22  2 677899999999999999998 78988    999999999999998876677777888


Q ss_pred             CCCCCEEEccCCc
Q 048732          152 LSSLKHLSLGTNE  164 (174)
Q Consensus       152 l~~L~~L~Ls~N~  164 (174)
                      +++|++|.+....
T Consensus       641 L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  641 LQSLRVLRLPRSA  653 (889)
T ss_pred             cccccEEEeeccc
Confidence            9999999986543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.07  E-value=0.00022  Score=33.96  Aligned_cols=21  Identities=48%  Similarity=0.651  Sum_probs=12.4

Q ss_pred             CCCEEeccCCCCCCccccccCC
Q 048732          130 NLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus       130 ~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      +|++||+++|+|+ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 56655543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.06  E-value=0.00085  Score=50.23  Aligned_cols=79  Identities=27%  Similarity=0.265  Sum_probs=57.9

Q ss_pred             EEEEcCCCCCCCCccccCccccc-CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCC
Q 048732           76 IKLDLAFRKRDSAEWYMNASLFT-PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS  154 (174)
Q Consensus        76 ~~L~L~~n~~~~g~~~~~~~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~  154 (174)
                      .+++|.+.++..    + .. ++ -+.+...+|+++|.+. .++.     |..+++|.+|.+++|+++.+-|.--.-+++
T Consensus        22 ~e~~LR~lkip~----i-en-lg~~~d~~d~iDLtdNdl~-~l~~-----lp~l~rL~tLll~nNrIt~I~p~L~~~~p~   89 (233)
T KOG1644|consen   22 RELDLRGLKIPV----I-EN-LGATLDQFDAIDLTDNDLR-KLDN-----LPHLPRLHTLLLNNNRITRIDPDLDTFLPN   89 (233)
T ss_pred             cccccccccccc----h-hh-ccccccccceecccccchh-hccc-----CCCccccceEEecCCcceeeccchhhhccc
Confidence            466777665541    1 11 11 2456788999999986 3333     779999999999999999666665556688


Q ss_pred             CCEEEccCCccc
Q 048732          155 LKHLSLGTNELN  166 (174)
Q Consensus       155 L~~L~Ls~N~l~  166 (174)
                      |..|.|.+|+|.
T Consensus        90 l~~L~LtnNsi~  101 (233)
T KOG1644|consen   90 LKTLILTNNSIQ  101 (233)
T ss_pred             cceEEecCcchh
Confidence            999999999876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.06  E-value=0.00035  Score=53.87  Aligned_cols=66  Identities=30%  Similarity=0.417  Sum_probs=47.5

Q ss_pred             cccCCCCCCEEeCcCC--ccccccCcchhhhcCCCCCCCEEeccCCCCCCccccc---cCCCCCCCEEEccCCcccc
Q 048732           96 LFTPFQQLEFLDLSGN--NITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS---LGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus        96 ~~~~l~~L~~L~ls~N--~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~---l~~l~~L~~L~Ls~N~l~g  167 (174)
                      .|..|++|+.|+++.|  ++.+.++..    ...+|+|++++++.|++.-  +..   +..+.+|..|++.+|..++
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl----~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVL----AEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceeh----hhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc
Confidence            3566788899999999  666666554    4566899999999998862  333   4456677888888776543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.00012  Score=57.79  Aligned_cols=87  Identities=26%  Similarity=0.321  Sum_probs=61.3

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcc-ccccCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI-FSSLGG  151 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~-p~~l~~  151 (174)
                      .+|..+||.+|.+..  |+=....+.+|+.|+.|+++.|.+...|-..    -....+|++|-|.+..+...- ...+..
T Consensus        71 ~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   71 TDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             hhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhhc
Confidence            478899999997762  2112344678999999999999998665442    135678888888887775432 334567


Q ss_pred             CCCCCEEEccCCcc
Q 048732          152 LSSLKHLSLGTNEL  165 (174)
Q Consensus       152 l~~L~~L~Ls~N~l  165 (174)
                      ++.++.|+++.|++
T Consensus       145 lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  145 LPKVTELHMSDNSL  158 (418)
T ss_pred             chhhhhhhhccchh
Confidence            78888888888843

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.00022  Score=58.78  Aligned_cols=67  Identities=22%  Similarity=0.266  Sum_probs=40.2

Q ss_pred             ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc-cccc-----cCCCCCCCEEEccCCccc
Q 048732           97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS-IFSS-----LGGLSSLKHLSLGTNELN  166 (174)
Q Consensus        97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~-~p~~-----l~~l~~L~~L~Ls~N~l~  166 (174)
                      ...+..|++|||++|++. ..+..  .-.+.++.|+.|+++.+.++.. +|+.     ...+++|++|+++.|++.
T Consensus       242 ~~i~~~L~~LdLs~N~li-~~~~~--~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  242 TKILQTLQELDLSNNNLI-DFDQG--YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhhhHHhhccccCCccc-ccccc--cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            344667777777777765 23311  0056677777777777776532 2332     234567777777777763

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.96  E-value=0.00041  Score=53.53  Aligned_cols=64  Identities=27%  Similarity=0.332  Sum_probs=48.2

Q ss_pred             ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCC--CCCCccccccCCCCCCCEEEccCCccc
Q 048732           97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLN--HFNNSIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus        97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N--~l~g~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      ...+..|+.+.+.+-.++... .     +..+++|+.|++|.|  +.++.++.....+++|++|+++.|+|+
T Consensus        39 ~d~~~~le~ls~~n~gltt~~-~-----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLT-N-----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccchhhhhhhccceeecc-c-----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            344556666666666665322 1     668899999999999  667777666667799999999999987

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.91  E-value=5e-05  Score=66.20  Aligned_cols=81  Identities=25%  Similarity=0.297  Sum_probs=58.7

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .+..++.++|.+.     .-..++.-++.|+.|+|+.|++... . .    +..++.|++|||++|.++ .+|..-..--
T Consensus       165 ~L~~a~fsyN~L~-----~mD~SLqll~ale~LnLshNk~~~v-~-~----Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc  232 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-----LMDESLQLLPALESLNLSHNKFTKV-D-N----LRRLPKLKHLDLSYNCLR-HVPQLSMVGC  232 (1096)
T ss_pred             hHhhhhcchhhHH-----hHHHHHHHHHHhhhhccchhhhhhh-H-H----HHhcccccccccccchhc-cccccchhhh
Confidence            4566677777654     2244566678899999999998743 2 2    788999999999999998 7776322222


Q ss_pred             CCCEEEccCCccc
Q 048732          154 SLKHLSLGTNELN  166 (174)
Q Consensus       154 ~L~~L~Ls~N~l~  166 (174)
                      .|..|.+++|.++
T Consensus       233 ~L~~L~lrnN~l~  245 (1096)
T KOG1859|consen  233 KLQLLNLRNNALT  245 (1096)
T ss_pred             hheeeeecccHHH
Confidence            4999999999765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.89  E-value=0.0005  Score=57.06  Aligned_cols=80  Identities=33%  Similarity=0.372  Sum_probs=60.4

Q ss_pred             EEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCC
Q 048732           75 VIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS  154 (174)
Q Consensus        75 v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~  154 (174)
                      +..++++.|.+..    + ...+..+++|+.+++..|.+.+... .    +..+++|++|++++|.++...+  +..++.
T Consensus        74 l~~l~l~~n~i~~----~-~~~l~~~~~l~~l~l~~n~i~~i~~-~----l~~~~~L~~L~ls~N~I~~i~~--l~~l~~  141 (414)
T KOG0531|consen   74 LKELNLRQNLIAK----I-LNHLSKLKSLEALDLYDNKIEKIEN-L----LSSLVNLQVLDLSFNKITKLEG--LSTLTL  141 (414)
T ss_pred             HHhhccchhhhhh----h-hcccccccceeeeeccccchhhccc-c----hhhhhcchheeccccccccccc--hhhccc
Confidence            4445566665541    1 2236788999999999999985433 2    4579999999999999985433  667788


Q ss_pred             CCEEEccCCccc
Q 048732          155 LKHLSLGTNELN  166 (174)
Q Consensus       155 L~~L~Ls~N~l~  166 (174)
                      |+.|++++|.|+
T Consensus       142 L~~L~l~~N~i~  153 (414)
T KOG0531|consen  142 LKELNLSGNLIS  153 (414)
T ss_pred             hhhheeccCcch
Confidence            999999999987

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.52  E-value=0.0014  Score=52.64  Aligned_cols=18  Identities=39%  Similarity=0.517  Sum_probs=8.4

Q ss_pred             cCCCCCCCEEeccCCCCC
Q 048732          125 LSSLKNLKFLDLTLNHFN  142 (174)
Q Consensus       125 ~~~l~~L~~L~ls~N~l~  142 (174)
                      +..+++|++|||.+|.|+
T Consensus       209 l~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             HHhCCcceeeecccchhh
Confidence            444444444444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.51  E-value=3.8e-05  Score=58.68  Aligned_cols=84  Identities=20%  Similarity=0.120  Sum_probs=72.0

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      ..+++.||++.|++.    .+ ..-|..++.|..||++.|.+. ..|..    ++....++.+++..|..+ ..|.+++.
T Consensus        41 ~kr~tvld~~s~r~v----n~-~~n~s~~t~~~rl~~sknq~~-~~~~d----~~q~~e~~~~~~~~n~~~-~~p~s~~k  109 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV----NL-GKNFSILTRLVRLDLSKNQIK-FLPKD----AKQQRETVNAASHKNNHS-QQPKSQKK  109 (326)
T ss_pred             cceeeeehhhhhHHH----hh-ccchHHHHHHHHHhccHhhHh-hChhh----HHHHHHHHHHHhhccchh-hCCccccc
Confidence            468999999999765    22 344777889999999999987 67877    888999999999999998 89999999


Q ss_pred             CCCCCEEEccCCccc
Q 048732          152 LSSLKHLSLGTNELN  166 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~  166 (174)
                      .++++++++-.|.|.
T Consensus       110 ~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFF  124 (326)
T ss_pred             cCCcchhhhccCcch
Confidence            999999999998875

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.30  E-value=0.0014  Score=52.60  Aligned_cols=93  Identities=25%  Similarity=0.191  Sum_probs=47.1

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----ccccc
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSL  149 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l  149 (174)
                      .+..+.++.|.+....+.+....|..+++|+.||+..|.++..-.......+..+++|+.|+++++.++..    +-+.+
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            46666666666543222222334567777777777777776321111111245555666666666555422    11112


Q ss_pred             -CCCCCCCEEEccCCccc
Q 048732          150 -GGLSSLKHLSLGTNELN  166 (174)
Q Consensus       150 -~~l~~L~~L~Ls~N~l~  166 (174)
                       ...++|++|.+.+|.++
T Consensus       266 ~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEIT  283 (382)
T ss_pred             hccCCCCceeccCcchhH
Confidence             12345555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.27  E-value=0.0021  Score=56.81  Aligned_cols=92  Identities=27%  Similarity=0.391  Sum_probs=50.7

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCcccccc-----Cc--------------chhhhcCCCCCCCE
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCV-----QN--------------EGLDRLSSLKNLKF  133 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~-----p~--------------~~~~~~~~l~~L~~  133 (174)
                      +.+++|.+++..+....+   .....++++|..||+|+.+++...     ..              .....+-+|++|++
T Consensus       148 PsL~sL~i~~~~~~~~dF---~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDF---SQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             cccceEEecCceecchhH---HHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            456666666654442221   223456777777777777665220     00              00122456777778


Q ss_pred             EeccCCCCCCcc--cc----ccCCCCCCCEEEccCCcccc
Q 048732          134 LDLTLNHFNNSI--FS----SLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       134 L~ls~N~l~g~~--p~----~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      ||+|..+.....  ..    .-..|++|+.||.|++.+.+
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            888776654221  11    12356778888887776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.00084  Score=55.44  Aligned_cols=63  Identities=29%  Similarity=0.363  Sum_probs=34.5

Q ss_pred             CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccc--cccCCCCCCCEEEccCCccc
Q 048732           99 PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIF--SSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus        99 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p--~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      .+++|+.|++..|..-+.....    ...+..|+.|||++|.+- ..+  ...+.++.|+.|+++.+.+.
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~----~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~  284 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATS----TKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIA  284 (505)
T ss_pred             hCCcHHHhhhhcccccceecch----hhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcc
Confidence            3455555555555311111111    335666777777777765 333  23556677777777776654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.00  E-value=0.00027  Score=55.49  Aligned_cols=79  Identities=24%  Similarity=0.188  Sum_probs=55.0

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccc---
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS---  148 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~---  148 (174)
                      ...+..|.|+-|++.    .+.  .+..+++|++|+|..|.|. .+.+.  .++.++|+|++|+|..|.-.|.-+..   
T Consensus        40 Mp~lEVLsLSvNkIs----sL~--pl~rCtrLkElYLRkN~I~-sldEL--~YLknlpsLr~LWL~ENPCc~~ag~nYR~  110 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKIS----SLA--PLQRCTRLKELYLRKNCIE-SLDEL--EYLKNLPSLRTLWLDENPCCGEAGQNYRR  110 (388)
T ss_pred             cccceeEEeeccccc----cch--hHHHHHHHHHHHHHhcccc-cHHHH--HHHhcCchhhhHhhccCCcccccchhHHH
Confidence            567788888888776    332  3667888888888888876 33332  34788888899888888887765543   


Q ss_pred             --cCCCCCCCEEE
Q 048732          149 --LGGLSSLKHLS  159 (174)
Q Consensus       149 --l~~l~~L~~L~  159 (174)
                        +.-|++|+.||
T Consensus       111 ~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  111 KVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHcccchhcc
Confidence              34566666664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.95  E-value=0.0071  Score=47.56  Aligned_cols=70  Identities=26%  Similarity=0.227  Sum_probs=41.0

Q ss_pred             ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccc---------cCCCCCCCEEEccCC
Q 048732           97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSS---------LGGLSSLKHLSLGTN  163 (174)
Q Consensus        97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~---------l~~l~~L~~L~Ls~N  163 (174)
                      +.++++|+..++|.|.+....|+.....++.-..|++|.+++|.+...    |-..         ...-+.|++....+|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            445667777777777776666665444566666777777777766311    1111         112355666766666


Q ss_pred             ccc
Q 048732          164 ELN  166 (174)
Q Consensus       164 ~l~  166 (174)
                      ++.
T Consensus       168 Rle  170 (388)
T COG5238         168 RLE  170 (388)
T ss_pred             hhc
Confidence            654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.90  E-value=0.0036  Score=29.66  Aligned_cols=18  Identities=56%  Similarity=0.960  Sum_probs=14.7

Q ss_pred             CCCEEeCcCCccccccCcc
Q 048732          102 QLEFLDLSGNNITGCVQNE  120 (174)
Q Consensus       102 ~L~~L~ls~N~l~g~~p~~  120 (174)
                      +|++||+++|+++ .+|+.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             TESEEEETSSEES-EEGTT
T ss_pred             CccEEECCCCcCE-eCChh
Confidence            4788999999888 78775

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.79  E-value=0.0068  Score=26.88  Aligned_cols=11  Identities=45%  Similarity=0.670  Sum_probs=3.3

Q ss_pred             CCEEeccCCCC
Q 048732          131 LKFLDLTLNHF  141 (174)
Q Consensus       131 L~~L~ls~N~l  141 (174)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.13  E-value=0.00071  Score=53.14  Aligned_cols=84  Identities=32%  Similarity=0.252  Sum_probs=65.4

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc--ccCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS--SLGG  151 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~--~l~~  151 (174)
                      .|..|++-+..+.    .  -....+|+.|+.|.|+-|.++..-|      +..+++|+.|.|..|.|. .+-+  .+.+
T Consensus        20 ~vkKLNcwg~~L~----D--Isic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~-sldEL~YLkn   86 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD----D--ISICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIE-SLDELEYLKN   86 (388)
T ss_pred             HhhhhcccCCCcc----H--HHHHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccc-cHHHHHHHhc
Confidence            4566666666554    1  1235689999999999999986555      779999999999999997 4432  5789


Q ss_pred             CCCCCEEEccCCcccccCC
Q 048732          152 LSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g~iP  170 (174)
                      +++|+.|.|..|.-.|.-+
T Consensus        87 lpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   87 LPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             CchhhhHhhccCCcccccc
Confidence            9999999999999877544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.05  E-value=0.014  Score=51.62  Aligned_cols=76  Identities=18%  Similarity=0.222  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCCCCCCC--C-------------ccccCc----ccccCCCCCCEEeCcCCccccc--cCcchhhhcCCCCC
Q 048732           72 TGRVIKLDLAFRKRDS--A-------------EWYMNA----SLFTPFQQLEFLDLSGNNITGC--VQNEGLDRLSSLKN  130 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~--g-------------~~~~~~----~~~~~l~~L~~L~ls~N~l~g~--~p~~~~~~~~~l~~  130 (174)
                      -+++..||+|+.++..  |             .+.+..    ..+.+|++|+.||+|.......  +......--..+|+
T Consensus       172 FpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe  251 (699)
T KOG3665|consen  172 FPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE  251 (699)
T ss_pred             cCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcc
Confidence            4679999999987762  1             011111    1245789999999998765422  12111011235899


Q ss_pred             CCEEeccCCCCCCcccc
Q 048732          131 LKFLDLTLNHFNNSIFS  147 (174)
Q Consensus       131 L~~L~ls~N~l~g~~p~  147 (174)
                      |+.||.|++.+.+.+-+
T Consensus       252 LrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  252 LRFLDCSGTDINEEILE  268 (699)
T ss_pred             ccEEecCCcchhHHHHH
Confidence            99999999998866544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.64  E-value=0.026  Score=27.61  Aligned_cols=14  Identities=36%  Similarity=0.672  Sum_probs=6.9

Q ss_pred             CCCCEEEccCCccc
Q 048732          153 SSLKHLSLGTNELN  166 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~  166 (174)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.64  E-value=0.026  Score=27.61  Aligned_cols=14  Identities=36%  Similarity=0.672  Sum_probs=6.9

Q ss_pred             CCCCEEEccCCccc
Q 048732          153 SSLKHLSLGTNELN  166 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~  166 (174)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.52  E-value=0.039  Score=43.53  Aligned_cols=17  Identities=29%  Similarity=0.151  Sum_probs=13.1

Q ss_pred             CCCCCCCEEEccCCccc
Q 048732          150 GGLSSLKHLSLGTNELN  166 (174)
Q Consensus       150 ~~l~~L~~L~Ls~N~l~  166 (174)
                      ..+++|++|||.+|-|+
T Consensus       211 ~y~~~LevLDlqDNtft  227 (388)
T COG5238         211 FYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             HHhCcceeeeccccchh
Confidence            35678888888888776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.24  E-value=0.02  Score=45.68  Aligned_cols=66  Identities=29%  Similarity=0.273  Sum_probs=47.6

Q ss_pred             CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732           99 PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus        99 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      ..+.++++|+.+|.++ ...+. +..+.++|.|++|+++.|.++..|-..--.+++|++|-|.+..+.
T Consensus        69 ~~~~v~elDL~~N~iS-dWseI-~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLIS-DWSEI-GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             Hhhhhhhhhcccchhc-cHHHH-HHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            4678999999999997 22221 122779999999999999998555332245678888888776543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.05  E-value=0.22  Score=33.70  Aligned_cols=35  Identities=29%  Similarity=0.345  Sum_probs=12.7

Q ss_pred             cCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEcc
Q 048732          125 LSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLG  161 (174)
Q Consensus       125 ~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls  161 (174)
                      |..+++|+.+++..+ ++..-...|.+. +|+.+.+.
T Consensus        77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            444555555555443 331222234443 45555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.98  E-value=0.051  Score=26.51  Aligned_cols=19  Identities=42%  Similarity=0.539  Sum_probs=14.6

Q ss_pred             CCCCCEEeccCCCCCCcccc
Q 048732          128 LKNLKFLDLTLNHFNNSIFS  147 (174)
Q Consensus       128 l~~L~~L~ls~N~l~g~~p~  147 (174)
                      +++|++|+|++|+++ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            467888999999888 5554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.98  E-value=0.051  Score=26.51  Aligned_cols=19  Identities=42%  Similarity=0.539  Sum_probs=14.6

Q ss_pred             CCCCCEEeccCCCCCCcccc
Q 048732          128 LKNLKFLDLTLNHFNNSIFS  147 (174)
Q Consensus       128 l~~L~~L~ls~N~l~g~~p~  147 (174)
                      +++|++|+|++|+++ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            467888999999888 5554

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.73  E-value=0.15  Score=42.56  Aligned_cols=31  Identities=29%  Similarity=0.210  Sum_probs=15.5

Q ss_pred             CCCEEeccCCCCCCccccccCCCCCCCEEEccCC
Q 048732          130 NLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTN  163 (174)
Q Consensus       130 ~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N  163 (174)
                      +|++|+++++... .+|..+.  .+|+.|+++.|
T Consensus       157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            4555555555543 2333222  35666666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.23  E-value=0.4  Score=40.07  Aligned_cols=52  Identities=10%  Similarity=0.002  Sum_probs=27.7

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLN  139 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N  139 (174)
                      ..+.|+++++++.    .++ .   --.+|+.|.++++.--..+|..    +  .++|+.|++++|
T Consensus        53 ~l~~L~Is~c~L~----sLP-~---LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~C  104 (426)
T PRK15386         53 ASGRLYIKDCDIE----SLP-V---LPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHC  104 (426)
T ss_pred             CCCEEEeCCCCCc----ccC-C---CCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCc
Confidence            4567777777554    232 1   1235777777653222244543    2  345666666666

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.09  E-value=0.16  Score=25.11  Aligned_cols=18  Identities=28%  Similarity=0.353  Sum_probs=10.9

Q ss_pred             CCCCEEeccCCCCCCcccc
Q 048732          129 KNLKFLDLTLNHFNNSIFS  147 (174)
Q Consensus       129 ~~L~~L~ls~N~l~g~~p~  147 (174)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            34666666666666 5554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.94  E-value=0.14  Score=24.43  Aligned_cols=15  Identities=27%  Similarity=0.545  Sum_probs=8.6

Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|+.|+|++|+|+.
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            567777777777653

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.64  E-value=1  Score=30.41  Aligned_cols=80  Identities=13%  Similarity=0.262  Sum_probs=50.2

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.+.+... +.    .+....|..+++|+.+.+..+ +. .++...   |..+++|+.+.+.. .+...-...|..+
T Consensus        12 ~~l~~i~~~~~-~~----~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~---F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen   12 SNLESITFPNT-IK----KIGENAFSNCTSLKSINFPNN-LT-SIGDNA---FSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             TT--EEEETST-------EE-TTTTTT-TT-SEEEESST-TS-CE-TTT---TTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CCCCEEEECCC-ee----EeChhhccccccccccccccc-cc-ccceee---eecccccccccccc-ccccccccccccc
Confidence            36788888753 54    566778999999999999886 54 455443   88998999999976 4442334567779


Q ss_pred             CCCCEEEccCC
Q 048732          153 SSLKHLSLGTN  163 (174)
Q Consensus       153 ~~L~~L~Ls~N  163 (174)
                      ++|+.+++..|
T Consensus        81 ~~l~~i~~~~~   91 (129)
T PF13306_consen   81 TNLKNIDIPSN   91 (129)
T ss_dssp             TTECEEEETTT
T ss_pred             ccccccccCcc
Confidence            99999999765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=89.26  E-value=0.15  Score=40.84  Aligned_cols=82  Identities=21%  Similarity=0.235  Sum_probs=51.5

Q ss_pred             CcEEEEEcCCCCCC--CCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccc--
Q 048732           73 GRVIKLDLAFRKRD--SAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS--  148 (174)
Q Consensus        73 ~~v~~L~L~~n~~~--~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~--  148 (174)
                      ..+++|+|++..-.  ..++   .......++|.+|||+.|..-..   .-+.+|-.++.|++|.++.+.  +++|..  
T Consensus       286 e~l~~LNlsG~rrnl~~sh~---~tL~~rcp~l~~LDLSD~v~l~~---~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~  357 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHL---STLVRRCPNLVHLDLSDSVMLKN---DCFQEFFKFNYLQHLSLSRCY--DIIPETLL  357 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHH---HHHHHhCCceeeeccccccccCc---hHHHHHHhcchheeeehhhhc--CCChHHee
Confidence            56788888875321  0111   11234678899999998754211   222337788889988887765  456663  


Q ss_pred             -cCCCCCCCEEEccC
Q 048732          149 -LGGLSSLKHLSLGT  162 (174)
Q Consensus       149 -l~~l~~L~~L~Ls~  162 (174)
                       +...++|.+||+.+
T Consensus       358 ~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  358 ELNSKPSLVYLDVFG  372 (419)
T ss_pred             eeccCcceEEEEecc
Confidence             56778888888764

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=89.12  E-value=0.35  Score=23.87  Aligned_cols=15  Identities=33%  Similarity=0.656  Sum_probs=10.3

Q ss_pred             CCCCCEEEccCCccc
Q 048732          152 LSSLKHLSLGTNELN  166 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~  166 (174)
                      +++|+.|++++|+|+
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            356777777777765

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=86.71  E-value=0.55  Score=23.37  Aligned_cols=14  Identities=43%  Similarity=0.679  Sum_probs=9.5

Q ss_pred             CCCCEEEccCCccc
Q 048732          153 SSLKHLSLGTNELN  166 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~  166 (174)
                      ++|++|||++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            45777777777764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.68  E-value=0.0096  Score=45.84  Aligned_cols=71  Identities=20%  Similarity=0.221  Sum_probs=57.1

Q ss_pred             cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732           94 ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus        94 ~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      -..+..+...+.||++.|++.. +-..    |+.++.|..||++.|.+. ..|..++++..++.+++..|..+ ..|.
T Consensus        35 v~ei~~~kr~tvld~~s~r~vn-~~~n----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~  105 (326)
T KOG0473|consen   35 VREIASFKRVTVLDLSSNRLVN-LGKN----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK  105 (326)
T ss_pred             hhhhhccceeeeehhhhhHHHh-hccc----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence            3446677889999999999863 3333    778889999999999998 78999999999999999999876 3443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=86.63  E-value=0.54  Score=37.78  Aligned_cols=16  Identities=38%  Similarity=0.465  Sum_probs=7.6

Q ss_pred             ccCCCCCCEEeCcCCc
Q 048732           97 FTPFQQLEFLDLSGNN  112 (174)
Q Consensus        97 ~~~l~~L~~L~ls~N~  112 (174)
                      |-+++.|++|.++.+.
T Consensus       334 ~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  334 FFKFNYLQHLSLSRCY  349 (419)
T ss_pred             HHhcchheeeehhhhc
Confidence            3344555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  115 bits (290), Expect = 2e-30
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 13/149 (8%)

Query: 26  GCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKR 85
             L +E   L+  K    D   L  W+      + C ++GV C +   +V  +DL+ +  
Sbjct: 8   QSLYREIHQLISFKDVLPDKNLLPDWSSN---KNPCTFDGVTCRD--DKVTSIDLSSKPL 62

Query: 86  DSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI 145
           +     +++SL      LE L LS ++I G      +       +L  LDL+ N  +  +
Sbjct: 63  NVGFSAVSSSLL-SLTGLESLFLSNSHING-----SVSGFKCSASLTSLDLSRNSLSGPV 116

Query: 146 --FSSLGGLSSLKHLSLGTNELNGSIDIE 172
              +SLG  S LK L++ +N L+    + 
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
              LEFLD+S NN +      G+  L     L+ LD++ N  +     ++   + LK L+
Sbjct: 199 CVNLEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 160 LGTNELNGSI 169
           + +N+  G I
Sbjct: 254 ISSNQFVGPI 263

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 5e-12
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI-FSSLGGL 152
             L      L  LDLSGN+  G V         S   L+ L L+ N+F+  +   +L  +
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPF----FGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 153 SSLKHLSLGTNELNGSI 169
             LK L L  NE +G +
Sbjct: 343 RGLKVLDLSFNEFSGEL 359

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 5e-12
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 99  PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHL 158
           P + L++L L+ N  TG + +       +   L  LDL+ NHF  ++    G  S L+ L
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDF---LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 159 SLGTNELNGSI 169
           +L +N  +G +
Sbjct: 324 ALSSNNFSGEL 334

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 8e-12
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
             S       LE LDLS N+I+G               LK L ++ N  +  +   +   
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVG-WVLSDGCGELKHLAISGNKISGDV--DVSRC 199

Query: 153 SSLKHLSLGTNELNGSI 169
            +L+ L + +N  +  I
Sbjct: 200 VNLEFLDVSSNNFSTGI 216

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 3e-11
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
             L ++ LS N +TG +       +  L+NL  L L+ N F+ +I + LG   SL  L L
Sbjct: 490 TNLNWISLSNNRLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 161 GTNELNGSI 169
            TN  NG+I
Sbjct: 546 NTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 9e-11
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLG 161
           +L  L LS N ++G + +     L SL  L+ L L LN     I   L  + +L+ L L 
Sbjct: 419 ELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 162 TNELNGSI 169
            N+L G I
Sbjct: 475 FNDLTGEI 482

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS-SLKHLS 159
             LE L LS NN +G +  +    L  ++ LK LDL+ N F+  +  SL  LS SL  L 
Sbjct: 318 SLLESLALSSNNFSGELPMDT---LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 160 LGTNELNGSI 169
           L +N  +G I
Sbjct: 375 LSSNNFSGPI 384

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
             +L  L L  N + G +       L  +K L+ L L  N     I S L   ++L  +S
Sbjct: 441 LSKLRDLKLWLNMLEGEI----PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496

Query: 160 LGTNELNGSI 169
           L  N L G I
Sbjct: 497 LSNNRLTGEI 506

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
            SL      L  LDLS NN +G +        +    L+ L L  N F   I  +L   S
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 154 SLKHLSLGTNELNGSI 169
            L  L L  N L+G+I
Sbjct: 419 ELVSLHLSFNYLSGTI 434

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 98  TPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKH 157
            P   L+ L L  N  TG +       LS+   L  L L+ N+ + +I SSLG LS L+ 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPT----LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 158 LSLGTNELNGSI 169
           L L  N L G I
Sbjct: 447 LKLWLNMLEGEI 458

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG-LSSLKHLSL 160
           +L+ L++S N   G +          LK+L++L L  N F   I   L G   +L  L L
Sbjct: 248 ELKLLNISSNQFVGPIPP------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301

Query: 161 GTNELNGSI 169
             N   G++
Sbjct: 302 SGNHFYGAV 310

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
           + LE L L  N++TG + +     LS+  NL ++ L+ N     I   +G L +L  L L
Sbjct: 466 KTLETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 161 GTNELNGSI 169
             N  +G+I
Sbjct: 522 SNNSFSGNI 530

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
             L  L+L  N+I+G + +E    +  L+ L  LDL+ N  +  I  ++  L+ L  + L
Sbjct: 656 PYLFILNLGHNDISGSIPDE----VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

Query: 161 GTNELNGSI 169
             N L+G I
Sbjct: 712 SNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 5e-09
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
              + FLD+S N ++G +  E    + S+  L  L+L  N  + SI   +G L  L  L 
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 160 LGTNELNGSI 169
           L +N+L+G I
Sbjct: 687 LSSNKLDGRI 696

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
                  +++     G           +  ++ FLD++ N  +  I   +G +  L  L+
Sbjct: 607 LSTRNPCNITSRVYGGHTSPT----FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 160 LGTNELNGSI 169
           LG N+++GSI
Sbjct: 663 LGHNDISGSI 672

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
           + L  L LS N+ +G +  E    L   ++L +LDL  N FN +I +++   S      +
Sbjct: 514 ENLAILKLSNNSFSGNIPAE----LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----I 565

Query: 161 GTNELNGSI 169
             N + G  
Sbjct: 566 AANFIAGKR 574

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 18/88 (20%)

Query: 100 FQQLEFLDLSGNNITG--------CVQNEGLDRLS--------SLKNLKFLDLTLN--HF 141
            + L +LDL+ N   G               + ++        +    K      N   F
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 142 NNSIFSSLGGLSSLKHLSLGTNELNGSI 169
                  L  LS+    ++ +    G  
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHT 624

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 4/71 (5%)

Query: 99  PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHL 158
             ++      +     G    +    L+ L      ++T   +      +     S+  L
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQ----LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 159 SLGTNELNGSI 169
            +  N L+G I
Sbjct: 638 DMSYNMLSGYI 648

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 92.2 bits (230), Expect = 4e-23
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 10/148 (6%)

Query: 25  EGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTT--GRVIKLDLAF 82
           E C  Q++ ALLQ+K    +   L  W    +  +   W GV C+  T   RV  LDL  
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNR-TWLGVLCDTDTQTYRVNNLDL-S 58

Query: 83  RKRDSAEWYMNASLFTPFQQLEFLDLSG-NNITGCVQNEGLDRLSSLKNLKFLDLTLNHF 141
                  + + +SL      L FL + G NN+ G +       ++ L  L +L +T  + 
Sbjct: 59  GLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNV 113

Query: 142 NNSIFSSLGGLSSLKHLSLGTNELNGSI 169
           + +I   L  + +L  L    N L+G++
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTL 141

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.6 bits (135), Expect = 6e-10
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
           +  + + L+ N++        L ++   KNL  LDL  N    ++   L  L  L  L++
Sbjct: 221 KNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 161 GTNELNGSI 169
             N L G I
Sbjct: 276 SFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.2 bits (134), Expect = 9e-10
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSL-KHLS 159
           + L  LD S N ++G +       +SSL NL  +    N  + +I  S G  S L   ++
Sbjct: 125 KTLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 160 LGTNELNGSI 169
           +  N L G I
Sbjct: 181 ISRNRLTGKI 190

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 103 LEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGT 162
              + +S N +TG +        ++L NL F+DL+ N          G   + + + L  
Sbjct: 176 FTSMTISRNRLTGKIPPT----FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 163 NELNGSI 169
           N L   +
Sbjct: 231 NSLAFDL 237

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.1 bits (113), Expect = 6e-07
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNL-KFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
             L  +   GN I+G + +       S   L   + ++ N     I  +   L +L  + 
Sbjct: 149 PNLVGITFDGNRISGAIPDS----YGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203

Query: 160 LGTNELNGSI 169
           L  N L G  
Sbjct: 204 LSRNMLEGDA 213

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 22/124 (17%), Positives = 36/124 (29%), Gaps = 13/124 (10%)

Query: 51  WNDGENYSDCCQWEGVECNNTTGRVIKLDLA---FRKRDSAEWYMNASLFTPFQQLEFLD 107
           WN  +         GV  N+  GRV  L L       R                +LE L 
Sbjct: 60  WNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDA-------IGQLTELEVLA 111

Query: 108 LSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL--SSLKHLSLGTNEL 165
           L  +      +  G   +S+  + +       H+  +          S L    + ++  
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 166 NGSI 169
             SI
Sbjct: 172 QKSI 175

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 101 QQLEFLDLSGNNITGCVQNEG----LDRLSSLKNLKFLDLTLNHFNN-SIFSSLGGLSSL 155
            +++ ++++ N      Q +     L      + ++ + +  N+     + +SL  +  L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 156 KHLSLGTNELNGSID 170
             L    N+L G + 
Sbjct: 333 GMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 101 QQLEFLDLSGNNITGCVQNEGL---DRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKH 157
             +  +D S N I                   N+  ++L+ N  +          S L  
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 158 LSLGTNELNG 167
           ++L  N L  
Sbjct: 462 INLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
           ++L  L+   N + G      L    S   L  L+L  N       +  G    +++LS 
Sbjct: 330 KKLGMLECLYNQLEGK-----LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 161 GTNELNG 167
             N+L  
Sbjct: 385 AHNKLKY 391

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN-------NSIF 146
           A+     +Q+E L  + N +             S+  +  +D + N          + + 
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFD---AKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 147 SSLGGLSSLKHLSLGTNELNGSID 170
            +     ++  ++L  N+++    
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 8/89 (8%), Positives = 27/89 (30%), Gaps = 15/89 (16%)

Query: 101 QQLEFLDLSGNNITGCVQNEGL---------------DRLSSLKNLKFLDLTLNHFNNSI 145
            +L    +  +        E                  +  +LK+L  +++        +
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 146 FSSLGGLSSLKHLSLGTNELNGSIDIEGE 174
            + L  L  ++ +++  N       ++ +
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDD 294

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 6/78 (7%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDR---LSSLKNLKFLDLTLNHFNNSIFSSL-- 149
            LF+    L  ++L GN +T   +N   D      +   L  +DL  N     +      
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRA 509

Query: 150 GGLSSLKHLSLGTNELNG 167
             L  L  + L  N  + 
Sbjct: 510 TTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 5/74 (6%)

Query: 97  FTPFQQLEFLDLSGNNITG---CVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
            T    L  +DLS N+ +       N     L         D   N         +    
Sbjct: 509 ATTLPYLVGIDLSYNSFSKFPTQPLN--SSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 154 SLKHLSLGTNELNG 167
           SL  L +G+N++  
Sbjct: 567 SLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 7/79 (8%), Positives = 25/79 (31%), Gaps = 12/79 (15%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHF--------NNSIFSS 148
           +   + L  +++        +       L +L  ++ +++  N          +    + 
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 149 LGGLSSLKHLSLGTNELNG 167
                 ++ + +G N L  
Sbjct: 301 APVGEKIQIIYIGYNNLKT 319

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 11/78 (14%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN-------NSIFSSLGGL 152
              +  ++LS N I+   +       S+   L  ++L  N               +    
Sbjct: 432 GINVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 153 SSLKHLSLGTNELNGSID 170
             L  + L  N+L    D
Sbjct: 488 YLLTSIDLRFNKLTKLSD 505

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
             L  +DL  N +T    +      ++L  L  +DL+ N F+    +     S+LK   +
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRA---TTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGI 543

Query: 161 GTNELNGSIDIEGE 174
                        E
Sbjct: 544 RNQRDAQGNRTLRE 557

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLG 161
            LE L + G ++T    ++ +  LS L +L  LD++ +  ++SI + +  L  +  + L 
Sbjct: 89  NLERLRIMGKDVT----SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 162 TNELNGSID 170
            N     I 
Sbjct: 145 YNGAITDIM 153

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
              ++ L ++  + T        + +S L NL+ L +      +    +L GL+SL  L 
Sbjct: 65  AHNIKDLTINNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 160 LGTNELNGSI 169
           +  +  + SI
Sbjct: 119 ISHSAHDDSI 128

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
            +    L  LD+S +       +  L ++++L  +  +DL+ N     I   L  L  LK
Sbjct: 108 LSGLTSLTLLDISHSAHD----DSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELK 162

Query: 157 HLSLGTNELNGSIDIEG 173
            L++  + ++    IE 
Sbjct: 163 SLNIQFDGVHDYRGIED 179

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 10/71 (14%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLG 161
           ++  +DLS N          +  L +L  LK L++  +  ++  +  +     L  L   
Sbjct: 137 KVNSIDLSYNG-----AITDIMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAF 189

Query: 162 TNELNGSIDIE 172
           +  +      +
Sbjct: 190 SQTIG---GKK 197

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
           F   +QLE LD   +N+    +        SL+NL +LD++  H   +      GLSSL+
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVF---LSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 157 HLSLGTNELNGSI 169
            L +  N    + 
Sbjct: 449 VLKMAGNSFQENF 461

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
           F  F +L+ LDLS   I             SL +L  L LT N   +    +  GLSSL+
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 157 HLSLGTNELNGSID 170
            L      L    +
Sbjct: 104 KLVAVETNLASLEN 117

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
              +FT  + L FLDLS   +            +SL +L+ L+++ N+F +        L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 153 SSLKHLSLGTNELNGSI 169
           +SL+ L    N +  S 
Sbjct: 518 NSLQVLDYSLNHIMTSK 534

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 91  YMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG 150
                +F     LE L ++GN+       +     + L+NL FLDL+         ++  
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---TELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 151 GLSSLKHLSLGTNELNGSI 169
            LSSL+ L++  N      
Sbjct: 492 SLSSLQVLNMSHNNFFSLD 510

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
             +     L  L L+GN I        L   S L +L+ L     +  +     +G L +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 155 LKHLSLGTNELNG 167
           LK L++  N +  
Sbjct: 126 LKELNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 103 LEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGT 162
            + LDLS N +             S   L+ LDL+          +   LS L  L L  
Sbjct: 30  TKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 163 NELNGSID 170
           N +     
Sbjct: 86  NPIQSLAL 93

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIF-SSLGGLS 153
           S+F   + L +LD+S  +             + L +L+ L +  N F  +        L 
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGI----FNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 154 SLKHLSLGTNELNGSI 169
           +L  L L   +L    
Sbjct: 471 NLTFLDLSQCQLEQLS 486

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSSLGG 151
               F+    L+ L     N+           +  LK LK L++  N   +  +      
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 152 LSSLKHLSLGTNELNGSI 169
           L++L+HL L +N++    
Sbjct: 148 LTNLEHLDLSSNKIQSIY 165

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 91  YMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG 150
            ++ + F     L+ L++S NN               L +L+ LD +LNH   S    L 
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP----YKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 151 GL-SSLKHLSLGTNELNGSIDIE 172
              SSL  L+L  N+   + + +
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
           NA        LEFLDLS N ++   +           +LK+LDL+ N    ++ S+  GL
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 153 SSLKHLSLGTNELNGSIDIE 172
             L+HL    + L    +  
Sbjct: 396 EQLEHLDFQHSNLKQMSEFS 415

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
                 + L+ L+++ N I      E     S+L NL+ LDL+ N   +   + L  L  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYF---SNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 155 LK----HLSLGTNELNGSID 170
           +      L L  N +N    
Sbjct: 175 MPLLNLSLDLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI-FSSLGGL 152
           +        L++LDLS N +     N        L+ L+ LD   ++      FS    L
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 153 SSLKHLSLGTNELNGSID 170
            +L +L +       + +
Sbjct: 421 RNLIYLDISHTHTRVAFN 438

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 5/85 (5%)

Query: 92  MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDR--LSSLKNLKFLDLTLNHFN---NSIF 146
           +  +       LE   L           E  D+  L  L NL   +  L + +   + I 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 147 SSLGGLSSLKHLSLGTNELNGSIDI 171
                L+++   SL +  +    D 
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDF 300

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 15/87 (17%), Positives = 19/87 (21%), Gaps = 13/87 (14%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLK-------------NLKFLDLTLNHF 141
            LF     +    L    I              L+                   LT    
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335

Query: 142 NNSIFSSLGGLSSLKHLSLGTNELNGS 168
                 S   L SL+ L L  N L+  
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFK 362

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS---SLGG 151
             F+    LE LDLS N I      +    L  L  +  L+L+L+   N +         
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTD----LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 152 LSSLKHLSLGTNELNGSI 169
              L  L+L  N  + ++
Sbjct: 199 EIRLHKLTLRNNFDSLNV 216

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 12/65 (18%), Positives = 23/65 (35%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLG 161
           +L  L L  N  +  V    +  L+ L+  + +     +  N        L  L +L++ 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 162 TNELN 166
              L 
Sbjct: 261 EFRLA 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 130 NLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170
           + K LDL+ N   +    S      L+ L L   E+    D
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 92  MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151
           ++   F     L  L L  N+I     N         KNL  LDL+ N  +++   +   
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 152 LSSLKHLSLGTNELNGSIDIE 172
           L +L+ L L  N++      E
Sbjct: 144 LENLQELLLSNNKIQALKSEE 164

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
           A+ FT + QL  LD+  N I+             L  LK L+L  N  +     +    +
Sbjct: 42  AANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 154 SLKHLSLGTNELNGSID 170
           +L  L L +N +    +
Sbjct: 98  NLTELHLMSNSIQKIKN 114

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
           F+    LE LDL  N I   +  +       L+N+  + L+ N +     +S   + SL+
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEW---RGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 157 HLSLGTNELNGSIDIEGE 174
            L L    L         
Sbjct: 458 RLMLRRVALKNVDSSPSP 475

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
           + F     L+ L L    +     +        L+NL  LDL+ N+  N     L GL  
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 155 LKHLSLGTNELN 166
           L+ L L  N L 
Sbjct: 506 LEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
            +++FT    L++L LS +  +            +   L  L+LT N  +     +   L
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404

Query: 153 SSLKHLSLGTNELNGSID 170
             L+ L LG NE+   + 
Sbjct: 405 GHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNIT----GCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSL 149
             +    ++LE LDL  NN+            +  L  L +L  L+L  N F+       
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

Query: 150 GGLSSLKHLSLGTNELNGSI 169
             L  LK + LG N LN   
Sbjct: 557 KDLFELKIIDLGLNNLNTLP 576

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
                 + L+ L LS N I           + +  +LK L+L+ N            +  
Sbjct: 139 GTQVQLENLQELLLSNNKIQA--LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 155 LKHLSLGTNELNGSI 169
           L  L L   +L  S+
Sbjct: 197 LFGLFLNNVQLGPSL 211

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNH--------FNNS 144
           + S F P + L  LDLS NNI     +     L  L+ L+ LDL  N+            
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDM----LEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 145 IFSSLGGLSSLKHLSLGTNELNGSI 169
               L GLS L  L+L +N  +   
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIP 552

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQN--EGLDRLSSL---KNLKFLDLTLNHFNNSIFS 147
               F    QLE+  L  NNI     +   GL  +  L   ++     ++L         
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 148 SLGGLSSLKHLSLGTNELNGSID 170
           S   L  L+HL++  N++ G   
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKS 346

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 99  PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHL 158
            +  L  LDLS NN+       G D  + L  L++  L  N+  +    SL GL ++++L
Sbjct: 246 KWTNLTMLDLSYNNLNV----VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 159 SLGTNELNGSI 169
           +L  +    SI
Sbjct: 302 NLKRSFTKQSI 312

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
              +  L+L+ N +   +      R S    L  LD+  N  +         L  LK L+
Sbjct: 24  PTNITVLNLTHNQLRR-LPAANFTRYS---QLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 160 LGTNELNGSID 170
           L  NEL+   D
Sbjct: 80  LQHNELSQLSD 90

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
                   L  L+L  N          ++    L  LK +DL LN+ N    S      S
Sbjct: 530 YFLKGLSHLHILNLESNGFDE----IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585

Query: 155 LKHLSLGTNELNGSI 169
           LK L+L  N +    
Sbjct: 586 LKSLNLQKNLITSVE 600

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 92  MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN--NSIFSSL 149
           +    +   + +  + LS N      +N      + + +L+ L L        +S  S  
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNS----FALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 150 GGLSSLKHLSLGTNELNGSID 170
             L +L  L L  N +    D
Sbjct: 477 QPLRNLTILDLSNNNIANIND 497

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLG 161
            +  L LS + ++    +          NL  LDL+ N+ N     S   L  L++  L 
Sbjct: 223 SIRNLSLSNSQLST--TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280

Query: 162 TNELNGSID 170
            N +     
Sbjct: 281 YNNIQHLFS 289

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG-GL 152
             +F    +L+ +DL  NN+     +      ++  +LK L+L  N   +      G   
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASV----FNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 153 SSLKHLSLGTNELNGSID 170
            +L  L +  N  + + +
Sbjct: 609 RNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRL-----SSLKNLKFLDLTLNHFNNSIFSSLGG 151
                 + +L+L  +     +    L ++       LK L+ L++  N       +   G
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 152 LSSLKHLSLGTNELNGS 168
           L +LK+LSL  +  +  
Sbjct: 352 LINLKYLSLSNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL-- 152
             F    +L  L L+   +   +  E L    +  +++ L L+ +  + +  ++  GL  
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLT-EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 153 SSLKHLSLGTNELNGSID 170
           ++L  L L  N LN   +
Sbjct: 248 TNLTMLDLSYNNLNVVGN 265

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG---GLSSLKHL 158
            L+ L+LS N I             ++  L  L L       S+   L      +S+++L
Sbjct: 172 SLKKLELSSNQIKEFSPGC----FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 159 SLGTNELNGSID 170
           SL  ++L+ + +
Sbjct: 228 SLSNSQLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 7/69 (10%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLG 161
             E  D S   +T    +          N+  L+LT N       ++    S L  L +G
Sbjct: 5   SHEVADCSHLKLTQVPDD-------LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 162 TNELNGSID 170
            N ++    
Sbjct: 58  FNTISKLEP 66

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
           + F   ++L+ LD   + +    +        SL+ L +LD++  +          GL+S
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAF---LSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 155 LKHLSLGTNELNGSI 169
           L  L +  N    + 
Sbjct: 450 LNTLKMAGNSFKDNT 464

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
           +  F+ F +L++LDLS   I   ++++       L +L  L LT N   +    S  GL+
Sbjct: 49  SYSFSNFSELQWLDLSRCEIET-IEDKAW---HGLHHLSNLILTGNPIQSFSPGSFSGLT 104

Query: 154 SLKHLSLGTNELNGSID 170
           SL++L     +L     
Sbjct: 105 SLENLVAVETKLASLES 121

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
            +++F     L FLDLS   +             +L  L+ L+++ N+      S    L
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQ----ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 153 SSLKHLSLGTNELNG 167
            SL  L    N +  
Sbjct: 521 YSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
              +F     L  L ++GN+      +      ++  NL FLDL+        +     L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNV---FANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 153 SSLKHLSLGTNELNG 167
             L+ L++  N L  
Sbjct: 497 HRLQLLNMSHNNLLF 511

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
           +     L  L L+GN I     + G    S L +L+ L        +     +G L +LK
Sbjct: 76  WHGLHHLSNLILTGNPIQS--FSPGS--FSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 157 HLSLGTNELNG 167
            L++  N ++ 
Sbjct: 132 KLNVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS-LGG 151
             S F   ++L +LD+S  N               L +L  L +  N F ++  S+    
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 152 LSSLKHLSLGTNELNG 167
            ++L  L L   +L  
Sbjct: 472 TTNLTFLDLSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 91  YMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG 150
            ++  +F    +L+ L++S NN+            + L +L  LD + N    S      
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLF----LDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 151 GLSSLKHLSLGTNELN 166
              SL   +L  N + 
Sbjct: 543 FPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 90  WYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSS 148
              +   F+    LE L      +           +  L  LK L++  N  ++  + + 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 149 LGGLSSLKHLSLGTNELNG 167
              L++L H+ L  N +  
Sbjct: 149 FSNLTNLVHVDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
               + +DLS N +   +++      S+   L++LDL+          +  GL  L +L 
Sbjct: 31  PSSTKNIDLSFNPLKI-LKSYS---FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 160 LGTNELNGSID 170
           L  N +     
Sbjct: 87  LTGNPIQSFSP 97

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                 L +LDLS N ++               +L+ LDL+ N     + ++  GL  L+
Sbjct: 346 KVALPSLSYLDLSRNALSF--SGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQ 402

Query: 157 HLSLGTNELNGSIDIE 172
           HL    + L    +  
Sbjct: 403 HLDFQHSTLKRVTEFS 418

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
                   L+ L+++ N I  C         S+L NL  +DL+ N+      + L  L  
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAY---FSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 155 LK----HLSLGTNELN 166
                  L +  N ++
Sbjct: 179 NPQVNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSL--GGLSS 154
                 L+ L L+ N  +         +  +L +L +LDL+ N  + S   S    G +S
Sbjct: 324 TLDLPFLKSLTLTMNKGS------ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 155 LKHLSLGTNEL 165
           L+HL L  N  
Sbjct: 378 LRHLDLSFNGA 388

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 17/93 (18%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSL---------------KNLKFLDLT 137
           +   F     +  + L+G +I          +  SL                 LK L LT
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLT 336

Query: 138 LNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID 170
           +N    SI      L SL +L L  N L+ S  
Sbjct: 337 MNKG--SISFKKVALPSLSYLDLSRNALSFSGC 367

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 4/76 (5%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDR--LSSLKNLKFLDLTLNHFNNS--IFSSLG 150
           +       L    L           E  +   +  L ++   +  L + N+         
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 151 GLSSLKHLSLGTNELN 166
            L+++  +SL    + 
Sbjct: 283 CLANVSAMSLAGVSIK 298

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI-FSSLGGLSSLKHLSL 160
            L  LDLS N       N        L+ L+ LD   +       FS+   L  L +L +
Sbjct: 377 SLRHLDLSFNGAIIMSAN-----FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 161 GTNELNGSID 170
                    D
Sbjct: 432 SYTNTKIDFD 441

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 11/66 (16%), Positives = 21/66 (31%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLG 161
           +L  L L GN  +  +    L  L+ L   + +        N        +  L  +++ 
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 162 TNELNG 167
              L  
Sbjct: 265 EFRLTY 270

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 11/134 (8%)

Query: 42  FNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLA---FRKRDSAEWYMNASLFT 98
            N++ H   WN  +         GV+ +N  GRV  L LA    + R             
Sbjct: 293 INNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDA-------IG 344

Query: 99  PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHL 158
              +L+ L    ++ T   +  G + L+   + +       H+          L+    L
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404

Query: 159 SLGTNELNGSIDIE 172
               N       I+
Sbjct: 405 QDAINRNPEMKPIK 418

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 9e-08
 Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 5/71 (7%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
                  +++   +  NN+     +     L  +  L  LD   N        + G    
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASAS---LQKMVKLGLLDCVHNKV--RHLEAFGTNVK 596

Query: 155 LKHLSLGTNEL 165
           L  L L  N++
Sbjct: 597 LTDLKLDYNQI 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 15/93 (16%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGL---------------DRLSSLKNLKFLDLTLNHF 141
                +L+ +  + +  T                          S+LK+L  ++L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 142 NNSIFSSLGGLSSLKHLSLGTNELNGSIDIEGE 174
              +   L  L  L+ L++  N    +  ++ +
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 1/66 (1%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDR-LSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
             +  +D S N I    +N           N   + L+ N             S +  + 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 160 LGTNEL 165
           L  N +
Sbjct: 704 LSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 9e-07
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 13/80 (16%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN---------NSIFS 147
           ++  + L  ++L        + +     L  L  L+ L++  N              +  
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 148 SLGGLSSLKHLSLGTNELNG 167
                  ++   +G N L  
Sbjct: 543 DEDTGPKIQIFYMGYNNLEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDR---LSSLKNLKFLDLTLNHFNNSIFSSL- 149
             LF     +  + LS N +T   +N    +     +   L  +DL  N    S+     
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFR 748

Query: 150 -GGLSSLKHLSLGTNELNG 167
              L  L ++ +  N  + 
Sbjct: 749 ATTLPYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 97  FTPFQQLEFLDLSGNNITG---CVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
            T    L  +D+S N  +       N    +L +       D   N       + +    
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLN--SSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 154 SLKHLSLGTNELNG 167
           SL  L +G+N++  
Sbjct: 807 SLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 6/67 (8%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
            +L  LD   N +        L+   +   L  L L  N               ++ L  
Sbjct: 573 VKLGLLDCVHNKVRH------LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 161 GTNELNG 167
             N+L  
Sbjct: 627 SHNKLKY 633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
           +     L  +DL  N +T  + ++   R ++L  L  +D++ N F+ S  +     S LK
Sbjct: 724 YKNTYLLTTIDLRFNKLTS-LSDDF--RATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLK 779

Query: 157 HLSLGTNELNGSIDIEGE 174
              +          I  +
Sbjct: 780 AFGIRHQRDAEGNRILRQ 797

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 8/82 (9%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN---NSIFSSLG 150
                   Q+E L  S N +             S+  +  +D + N       +I  S+ 
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFN---AKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 151 G--LSSLKHLSLGTNELNGSID 170
                +   ++L  NE+     
Sbjct: 669 DYKGINASTVTLSYNEIQKFPT 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 96  LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS---SLGGL 152
                Q+L   DL  + I    +N  +  +     +   D  + +  N I     ++  L
Sbjct: 391 FLDYDQRLNLSDLLQDAIN---RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447

Query: 153 SSLKHLSLGTNELNGSI 169
           + L+ +    +      
Sbjct: 448 TKLQIIYFANSPFTYDN 464

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 5/72 (6%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSSLGGLSSL 155
           F    +L  L L  N I    ++      +    ++ L  + N         +   +  +
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFC----AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646

Query: 156 KHLSLGTNELNG 167
             +    N++  
Sbjct: 647 GSVDFSYNKIGS 658

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 91  YMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG 150
             +  LF     L+ L+L GN+       +  + L +L  L+ L L+    ++    +  
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPK-GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 151 GLSSLKHLSLGTNELNG 167
            L  + H+ L  N L  
Sbjct: 498 SLKMMNHVDLSHNRLTS 514

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 96  LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSL 155
            F    QLE LDL+   +      +      +L  LK L+L+ +  + S      GL +L
Sbjct: 395 AFKECPQLELLDLAFTRLKVK---DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 156 KHLSLGTNELNGSIDIE 172
           +HL+L  N        +
Sbjct: 452 QHLNLQGNHFPKGNIQK 468

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
             + F+    L FLDL+   I   +  +      S   L  L LT N       ++L G 
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYW-IHEDTF---QSQHRLDTLVLTANPLIFMAETALSGP 104

Query: 153 SSLKHLSLGTNELNGSID 170
            +LKHL      ++    
Sbjct: 105 KALKHLFFIQTGISSIDF 122

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
           +++ F  F  L+ LDL+  +++     E    L  L  LK L L+ N F N    S    
Sbjct: 270 SSNTFHCFSGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 153 SSLKHLSLGTNELNGSI 169
            SL HLS+  N     +
Sbjct: 325 PSLTHLSIKGNTKRLEL 341

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 92  MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151
           M  +  +  + L+ L      I+  +    L    + K L+ L L  NH ++        
Sbjct: 96  MAETALSGPKALKHLFFIQTGISS-IDFIPL---HNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 152 LSSLKHLSLGTNELNG 167
              LK L    N ++ 
Sbjct: 152 TEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
                   + L  LDLS ++I           L +L +L+ L+L+ N   +    +    
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQ--LRNLSHLQSLNLSYNEPLSLKTEAFKEC 399

Query: 153 SSLKHLSLGTNELNGSID 170
             L+ L L    L     
Sbjct: 400 PQLELLDLAFTRLKVKDA 417

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
           F    +L+ L L+ N +    +      LS  K LK L       ++  F  L    +L+
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 157 HLSLGTNELNGSID 170
            L LG+N ++    
Sbjct: 133 SLYLGSNHISSIKL 146

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS--SLG 150
                + F  L  L + GN     +       L +L+NL+ LDL+ +    S      L 
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGC---LENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 151 GLSSLKHLSLGTNELNG 167
            LS L+ L+L  NE   
Sbjct: 374 NLSHLQSLNLSYNEPLS 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHF---NNSIFSSLGG 151
           S F     L+ L+LS + +    +         L  L+ L+L  NHF   N    +SL  
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQL----FDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 152 LSSLKHLSLGTNELNG 167
           L  L+ L L   +L+ 
Sbjct: 475 LGRLEILVLSFCDLSS 490

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
           +   FT  + +  +DLS N +T     E L  L  +    +L+L  NH +  + S L  L
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGI----YLNLASNHISIILPSLLPIL 546

Query: 153 SSLKHLSLGTNELNGSIDIE 172
           S  + ++L  N L+ +    
Sbjct: 547 SQQRTINLRQNPLDCTCSNI 566

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS-SLGGLSSL 155
                 L+ L LS N      Q       S+  +L  L +  N     + +  L  L +L
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQIS----ASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 156 KHLSLGTNELNGSIDIEGE 174
           + L L  +++  S     +
Sbjct: 353 RELDLSHDDIETSDCCNLQ 371

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 103 LEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGT 162
            E L+ S N +   +QN      S L NL FLDLT          +      L  L L  
Sbjct: 35  TECLEFSFNVLPT-IQNTT---FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 163 NELNGSID 170
           N L    +
Sbjct: 91  NPLIFMAE 98

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
                  + LE L L  N+I+    +  L +    + LK LD   N  +      +  L 
Sbjct: 122 FIPLHNQKTLESLYLGSNHIS----SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 154 SLKHLSL 160
              +LSL
Sbjct: 178 QATNLSL 184

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 87  SAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIF 146
                   +      +LE L LS  +++   Q+      +SLK +  +DL+ N   +S  
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA----FTSLKMMNHVDLSHNRLTSSSI 517

Query: 147 SSLGGLSSLKHLSLGTNELNG 167
            +L  L  + +L+L +N ++ 
Sbjct: 518 EALSHLKGI-YLNLASNHISI 537

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 100 FQQLEFLDLSGNNITG-CVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHL 158
               + L+  G        +      + SL    F D+     + ++F  L  + S++ +
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESI 259

Query: 159 SLGTNELNG 167
           +L  +    
Sbjct: 260 NLQKHYFFN 268

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
            +  Q L        +      +  +       +++ ++L  ++F N   ++    S L+
Sbjct: 224 NSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281

Query: 157 HLSLGTNELN 166
            L L    L+
Sbjct: 282 ELDLTATHLS 291

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 5e-08
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                +L+ L++  N I+       +  L++L  L  L L  N   N     +GGL++L 
Sbjct: 261 VKDLTKLKMLNVGSNQISD------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 157 HLSLGTNELNGSIDIEG 173
            L L  N +     +  
Sbjct: 315 TLFLSQNHITDIRPLAS 331

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 6e-08
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
              LE+L+L+GN IT       +  LS+L  L  L +  N    +  S+L  L++L+ L 
Sbjct: 65  LTNLEYLNLNGNQITD------ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELY 116

Query: 160 LGTNELNGSIDIEG 173
           L  + ++    +  
Sbjct: 117 LNEDNISDISPLAN 130

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                 L  L L+ N I        +  L+SL +L +    +N   +   + +  ++ L 
Sbjct: 173 IANLTDLYSLSLNYNQIED------ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLN 224

Query: 157 HLSLGTNELNGSIDIEG 173
            L +G N++     +  
Sbjct: 225 SLKIGNNKITDLSPLAN 241

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 5e-07
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                ++  L+L  N+         L  LS++  L +L +T +   +   + +  L+ L 
Sbjct: 128 LANLTKMYSLNLGANHNLS-----DLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLY 180

Query: 157 HLSLGTNELNGSIDIEG 173
            LSL  N++     +  
Sbjct: 181 SLSLNYNQIEDISPLAS 197

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                QL +L++  N I+       ++ +  L  LK L++  N  ++   S L  LS L 
Sbjct: 239 LANLSQLTWLEIGTNQIS------DINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 157 HLSLGTNELNGSI 169
            L L  N+L    
Sbjct: 291 SLFLNNNQLGNED 303

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
            +   +L  L +  N IT       +  L +L NL+ L L  ++ ++   S L  L+ + 
Sbjct: 84  LSNLVKLTNLYIGTNKIT------DISALQNLTNLRELYLNEDNISD--ISPLANLTKMY 135

Query: 157 HLSLGTNELNGSID 170
            L+LG N     + 
Sbjct: 136 SLNLGANHNLSDLS 149

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
               + +  L ++G  +        +  +  L NL++L+L  N   +   S L  L  L 
Sbjct: 40  QEELESITKLVVAGEKVA------SIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLT 91

Query: 157 HLSLGTNELN 166
           +L +GTN++ 
Sbjct: 92  NLYIGTNKIT 101

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
            +L  L +  N IT       L  L++L  L +L++  N  ++   +++  L+ LK L++
Sbjct: 221 TRLNSLKIGNNKITD------LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNV 272

Query: 161 GTNELNGSIDIEG 173
           G+N+++    +  
Sbjct: 273 GSNQISDISVLNN 285

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                QL  L L+ N +     NE ++ +  L NL  L L+ NH  +     L  LS + 
Sbjct: 283 LNNLSQLNSLFLNNNQLG----NEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMD 336

Query: 157 HLSLGTNEL 165
                   +
Sbjct: 337 SADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 9/74 (12%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
             +     L   ++T       +     L+++  L +      +     +  L++L++L+
Sbjct: 21  LAEGIRAVLQKASVTD------VVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 160 LGTNELNGSIDIEG 173
           L  N++     +  
Sbjct: 73  LNGNQITDISPLSN 86

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 7e-08
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 90  WYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSS 148
           ++++   F     L  L L    ++  V  +G     +LK L  LDL+ N   +  +  S
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY--FRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 149 LGGLSSLKHLSLGTNEL 165
            G L+SLK +   +N++
Sbjct: 144 FGKLNSLKSIDFSSNQI 160

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
            AS F   +QL+ L+L        +  E      +L NL+ LDL  +        +  GL
Sbjct: 40  TASSFPFLEQLQLLELGSQYTPLTIDKEAF---RNLPNLRILDLGSSKIYFLHPDAFQGL 96

Query: 153 SSLKHLSLGTNELNGSI 169
             L  L L    L+ ++
Sbjct: 97  FHLFELRLYFCGLSDAV 113

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 9e-07
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 92  MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151
           +    F     L+ L+LS N +     +        L  + ++DL  NH       +   
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSS----NFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 152 LSSLKHLSLGTNELN 166
           L  L+ L L  N L 
Sbjct: 361 LEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNE-GLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
              +    LE L L  N +    + E   D    L +L+ L L  N+ N+        L+
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504

Query: 154 SLKHLSLGTNELN 166
           +L+ LSL +N L 
Sbjct: 505 ALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSL----- 149
                   L+ L L+ N  + C  +      S   +L+ L L  N    +  + L     
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGD---QTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 150 GGLSSLKHLSLGTNELN 166
            GLS L+ L L  N LN
Sbjct: 477 EGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 36  LQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRK-RDSAEWYMNA 94
           L + +F     HL      +N    C  +     N    + +L L     + + E  +  
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP--SLEQLFLGENMLQLAWETELCW 473

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
            +F     L+ L L+ N +   +        S L  L+ L L  N       S     ++
Sbjct: 474 DVFEGLSHLQVLYLNHNYLN-SLPP---GVFSHLTALRGLSLNSNRLTV--LSHNDLPAN 527

Query: 155 LKHLSLGTNEL 165
           L+ L +  N+L
Sbjct: 528 LEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI-FSSLGGLS 153
            +       E L LS N I   V          L+ L+ L+L   +   +I   +   L 
Sbjct: 18  QVPQVLNTTERLLLSFNYIRT-VTASS---FPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 154 SLKHLSLGTNELN 166
           +L+ L LG++++ 
Sbjct: 74  NLRILDLGSSKIY 86

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 92  MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151
           +    F   + L  LDLS N I     +        L +LK +D + N         L  
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPS---FGKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 152 LS--SLKHLSLGTNEL 165
           L   +L   SL  N L
Sbjct: 171 LQGKTLSFFSLAANSL 186

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 91  YMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG 150
            + +S F    ++ ++DL  N+I              L+ L+ LDL  N       +++ 
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIA----IIQDQTFKFLEKLQTLDLRDNA-----LTTIH 378

Query: 151 GLSSLKHLSLGTNELN 166
            + S+  + L  N+L 
Sbjct: 379 FIPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLG 161
            +  LDLS   +             +LK+LK L+L  N  N     +  GL +L+ L+L 
Sbjct: 267 SVRHLDLSHGFVFSLNSRV----FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 162 TNEL 165
            N L
Sbjct: 323 YNLL 326

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 15/79 (18%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI--FSSLGGLSS 154
                 +  L L+GN +T       +  L++LKNL +L L      N I   SSL  L  
Sbjct: 61  IQYLPNVTKLFLNGNKLT------DIKPLTNLKNLGWLFLD----ENKIKDLSSLKDLKK 110

Query: 155 LKHLSLGTNELNGSIDIEG 173
           LK LSL  N ++   DI G
Sbjct: 111 LKSLSLEHNGIS---DING 126

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 8e-06
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 12/66 (18%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI--FSSLGGLSSLKHLS 159
           +L+ L L  N I+       ++ L  L  L+ L L     NN I   + L  L+ L  LS
Sbjct: 110 KLKSLSLEHNGISD------INGLVHLPQLESLYLG----NNKITDITVLSRLTKLDTLS 159

Query: 160 LGTNEL 165
           L  N++
Sbjct: 160 LEDNQI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 21/90 (23%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRL----------------SSLKNLKFLDLTLNHFNN 143
           F +    +L   ++T  V    L+ +                  L N+  L L  N   +
Sbjct: 20  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD 79

Query: 144 SIFSSLGGLSSLKHLSLGTNELNGSIDIEG 173
                L  L +L  L L  N++    D+  
Sbjct: 80  --IKPLTNLKNLGWLFLDENKIK---DLSS 104

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI--FSSLGGLSSLKH 157
             QLE L L  N IT       +  LS L  L  L L     +N I     L GL+ L++
Sbjct: 130 LPQLESLYLGNNKIT------DITVLSRLTKLDTLSLE----DNQISDIVPLAGLTKLQN 179

Query: 158 LSLGTNEL 165
           L L  N +
Sbjct: 180 LYLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
            +L+ L L  N I+       +  L+ L  L+ L L+ NH ++    +L GL +L  L L
Sbjct: 153 TKLDTLSLEDNQIS------DIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 204

Query: 161 GTNEL 165
            + E 
Sbjct: 205 FSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 6/78 (7%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
                  +L+ L LS N+I+       L  L+ LKNL  L+L      N   +    L  
Sbjct: 169 VPLAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 155 LKHLSLGTNELNGSIDIE 172
              +      L     I 
Sbjct: 223 PNTVKNTDGSLVTPEIIS 240

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
              L  ++ S N +T       +  L +L  L  + +  N   +   + L  L++L  L+
Sbjct: 67  LNNLTQINFSNNQLTD------ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLT 118

Query: 160 LGTNELNGSIDIEG 173
           L  N++     ++ 
Sbjct: 119 LFNNQITDIDPLKN 132

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
              L+ L L+GN +        +  L+SL NL  LDL  N  +N   + L GL+ L  L 
Sbjct: 220 LTNLDELSLNGNQLKD------IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELK 271

Query: 160 LGTNELNGSIDIEG 173
           LG N+++    + G
Sbjct: 272 LGANQISNISPLAG 285

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
            +   +L  L L  N I+       +  L+ L  L  L+L  N   +   S +  L +L 
Sbjct: 261 LSGLTKLTELKLGANQISN------ISPLAGLTALTNLELNENQLED--ISPISNLKNLT 312

Query: 157 HLSLGTNELNGSIDIEG 173
           +L+L  N ++    +  
Sbjct: 313 YLTLYFNNISDISPVSS 329

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
            T   Q+  L      I        +D +  L NL  ++ + N   +   + L  L+ L 
Sbjct: 42  QTDLDQVTTLQADRLGIK------SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLV 93

Query: 157 HLSLGTNELNGSIDIEG 173
            + +  N++     +  
Sbjct: 94  DILMNNNQIADITPLAN 110

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
            +  + L +L L  NNI+       +  +SSL  L+ L    N  ++   SSL  L+++ 
Sbjct: 305 ISNLKNLTYLTLYFNNIS------DISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNIN 356

Query: 157 HLSLGTNELNGSIDIEG 173
            LS G N+++    +  
Sbjct: 357 WLSAGHNQISDLTPLAN 373

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                +L  + ++ N I        +  L++L NL  L L  N   +     L  L++L 
Sbjct: 86  LKNLTKLVDILMNNNQIAD------ITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLN 137

Query: 157 HLSLGTNELNGSIDIEG 173
            L L +N ++    + G
Sbjct: 138 RLELSSNTISDISALSG 154

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                 LE L  + N I+       +  L  L NL  L L  N   +    +L  L++L 
Sbjct: 195 LAKLTNLESLIATNNQISD------ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLT 246

Query: 157 HLSLGTNELNGSIDIEG 173
            L L  N+++    + G
Sbjct: 247 DLDLANNQISNLAPLSG 263

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                 L  L+LS N I+       +  LS L +L+ L         +    L  L++L+
Sbjct: 130 LKNLTNLNRLELSSNTISD------ISALSGLTSLQQLSF---GNQVTDLKPLANLTTLE 180

Query: 157 HLSLGTNELNG 167
            L + +N+++ 
Sbjct: 181 RLDISSNKVSD 191

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 8/74 (10%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
             +     L   N+T           + L  +  L        +     +  L++L  ++
Sbjct: 23  LAEKMKTVLGKTNVTD------TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 160 LGTNELNGSIDIEG 173
              N+L     ++ 
Sbjct: 75  FSNNQLTDITPLKN 88

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 6/75 (8%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                 + +L    N I+       L  L++L  +  L L    + N+  +    +S   
Sbjct: 349 LANLTNINWLSAGHNQISD------LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 157 HLSLGTNELNGSIDI 171
            +   T  L     I
Sbjct: 403 TVKNVTGALIAPATI 417

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
           S F   +QLE LD   +N+    +        SL+NL +LD++  H   +      GLSS
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 155 LKHLSLGTNELNGSI 169
           L+ L +  N    + 
Sbjct: 447 LEVLKMAGNSFQENF 461

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
              +F     LE L ++GN+       +    L    NL FLDL+         ++   L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---NLTFLDLSQCQLEQLSPTAFNSL 493

Query: 153 SSLKHLSLGTNEL 165
           SSL+ L++ +N+L
Sbjct: 494 SSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS-SLGG 151
             S+F   + L +LD+S  +      N   + LS   +L+ L +  N F  +        
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLS---SLEVLKMAGNSFQENFLPDIFTE 468

Query: 152 LSSLKHLSLGTNELN 166
           L +L  L L   +L 
Sbjct: 469 LRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
            +  F  F +L+ LDLS   I   +++       SL +L  L LT N   +    +  GL
Sbjct: 44  GSYSFFSFPELQVLDLSRCEIQT-IEDGAYQ---SLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 153 SSLKHLSLGTNEL 165
           SSL+ L      L
Sbjct: 100 SSLQKLVAVETNL 112

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
           +     L  L L+GN I   +       LS   +L+ L     +  +     +G L +LK
Sbjct: 72  YQSLSHLSTLILTGNPIQS-LALGAFSGLS---SLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 157 HLSLGTNELN 166
            L++  N + 
Sbjct: 128 ELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
               + LDLS N +   + +           L+ LDL+          +   LS L  L 
Sbjct: 27  PFSTKNLDLSFNPLRH-LGSYSFFSFP---ELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 160 LGTNEL 165
           L  N +
Sbjct: 83  LTGNPI 88

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 92  MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSSLG 150
           +    F+    L+ L     N+   ++N  +     LK LK L++  N   +  +     
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLAS-LENFPIG---HLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 151 GLSSLKHLSLGTNEL 165
            L++L+HL L +N++
Sbjct: 147 NLTNLEHLDLSSNKI 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
                  + L+ L+++ N I      E      +L NL+ LDL+ N   +   + L  L 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 154 SLK----HLSLGTNELN 166
            +      L L  N +N
Sbjct: 174 QMPLLNLSLDLSLNPMN 190

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
           ASL      ++ LDLSGN ++     +    L+    L+ L+L+ N         L  LS
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLESLS 80

Query: 154 SLKHLSLGTNEL 165
           +L+ L L  N +
Sbjct: 81  TLRTLDLNNNYV 92

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
            A L      LE L+L  N I        +        LK LDL+ N     +       
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY------DVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSA 213

Query: 153 SSLKHLSLGTNEL 165
           + +  +SL  N+L
Sbjct: 214 AGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
            + +   ++ +++   + +       S  N+K LDL+ N  +    + L   + L+ L+L
Sbjct: 10  NRYKIEKVTDSSLKQALASL----RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 161 GTNELNGSIDIEG 173
            +N L  ++D+E 
Sbjct: 66  SSNVLYETLDLES 78

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 12/82 (14%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRL------------SSLKNLKFLDLTLNHFNNS 144
                 L  LDL+ N +   +    ++ L            S  +  K + L  N     
Sbjct: 76  LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135

Query: 145 IFSSLGGLSSLKHLSLGTNELN 166
                G  S +++L L  NE++
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 98  TPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKH 157
             F +L+ LDLS N +   +  E      S   + ++ L  N     I  +L    +L+H
Sbjct: 188 VVFAKLKTLDLSSNKLAF-MGPE----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 158 LSLGTNELN 166
             L  N  +
Sbjct: 242 FDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                ++++LDL  N I   V    L   +S   L+ L+L  N             + LK
Sbjct: 140 EGCRSRVQYLDLKLNEIDT-VNFAEL--AASSDTLEHLNLQYNFI--YDVKGQVVFAKLK 194

Query: 157 HLSLGTNEL 165
            L L +N+L
Sbjct: 195 TLDLSSNKL 203

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 7e-07
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 92  MNASLFTPFQQLEFLDLSGNNITG---CVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS 148
            +      F  L  LDLS N   G    +      +  +L+ L   +  +   +    + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 149 LGGLSSLKHLSLGTNELNGSIDIEG 173
                 L+ L L  N L  +     
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPS 248

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 20/89 (22%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLK------------------NLKFLDL 136
           +L     QL+ LDLS N++         D  S L                    L  LDL
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDL 281

Query: 137 TLNHFNNSIFSSLGGLSSLKHLSLGTNEL 165
           + N  +     S   L  + +LSL  N  
Sbjct: 282 SYNRLDR--NPSPDELPQVGNLSLKGNPF 308

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 7e-07
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
           ASL      ++ LDLSGN ++     +    L+    L+ L+L+ N         L  LS
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLESLS 80

Query: 154 SLKHLSLGTNELN 166
           +L+ L L  N + 
Sbjct: 81  TLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
            + +   ++ +++   + +       S  N+K LDL+ N  +    + L   + L+ L+L
Sbjct: 10  NRYKIEKVTDSSLKQALASL----RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 161 GTNELNGSIDIEG 173
            +N L  ++D+E 
Sbjct: 66  SSNVLYETLDLES 78

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
           A L      LE L+L  N I        +        LK LDL+ N     +       +
Sbjct: 162 AELAASSDTLEHLNLQYNFIY------DVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAA 214

Query: 154 SLKHLSLGTNEL 165
            +  +SL  N+L
Sbjct: 215 GVTWISLRNNKL 226

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 12/82 (14%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRL------------SSLKNLKFLDLTLNHFNNS 144
                 L  LDL+ N +   +    ++ L            S  +  K + L  N     
Sbjct: 76  LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135

Query: 145 IFSSLGGLSSLKHLSLGTNELN 166
                G  S +++L L  NE++
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 98  TPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKH 157
             F +L+ LDLS N +   +  E      S   + ++ L  N     I  +L    +L+H
Sbjct: 188 VVFAKLKTLDLSSNKLAF-MGPE----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 158 LSLGTNELN 166
             L  N  +
Sbjct: 242 FDLRGNGFH 250

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS-SLGGLS 153
           S+F   + L +LD+S  +      N   + LS   +L+ L +  N F  +        L 
Sbjct: 120 SVFLSLRNLIYLDISHTHTRV-AFNGIFNGLS---SLEVLKMAGNSFQENFLPDIFTELR 175

Query: 154 SLKHLSLGTNEL 165
           +L  L L   +L
Sbjct: 176 NLTFLDLSQCQL 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
             +F    QL  L LS N ++   +           +LK+LDL+ N    ++ S+  GL 
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLE 101

Query: 154 SLKHLSLGTNEL 165
            L+HL    + L
Sbjct: 102 QLEHLDFQHSNL 113

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
           F   +QLE LD   +N+   +    +    SL+NL +LD++  H   +      GLSSL+
Sbjct: 97  FLGLEQLEHLDFQHSNLK-QMSEFSV--FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 157 HLSLGTNELNGSI 169
            L +  N    + 
Sbjct: 154 VLKMAGNSFQENF 166

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
              +FT  + L FLDLS   +   +     +   SL +L+ L+++ N+F +        L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQ-LSPTAFN---SLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 153 SSLKHLSLGTNEL 165
           +SL+ L    N +
Sbjct: 223 NSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
              +F     LE L ++GN+       +    L    NL FLDL+         ++   L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---NLTFLDLSQCQLEQLSPTAFNSL 198

Query: 153 SSLKHLSLGTNELN 166
           SSL+ L++  N   
Sbjct: 199 SSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDR--LSSLKNLKFLDLTLNHF---NNSIFSS 148
            + F     L+ L++S NN         LD      L +L+ LD +LNH           
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFS------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 149 LGGLSSLKHLSLGTN 163
               SSL  L+L  N
Sbjct: 246 F--PSSLAFLNLTQN 258

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 96  LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSL 155
           L   F++LEFL      +T       +  L  L  LK L+L+ N  +  +        +L
Sbjct: 37  LTDEFEELEFLSTINVGLTS------IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 156 KHLSLGTNELNGSIDIE 172
            HL+L  N++     IE
Sbjct: 91  THLNLSGNKIKDLSTIE 107

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSSLGGLSSL 155
                +L+ L+LS N ++G ++           NL  L+L+ N   + S    L  L +L
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLA----EKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115

Query: 156 KHLSLGTNEL 165
           K L L   E+
Sbjct: 116 KSLDLFNCEV 125

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 92  MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG 151
              SLF     L+ L +        ++       + L +L  L++      N    SL  
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQSLKS 170

Query: 152 LSSLKHLSLGTNELN 166
           +  + HL+L  +E  
Sbjct: 171 IRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 90  WYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIF--- 146
           +Y  +++++  ++++ + +  + +   V          LK+L+FLDL+ N          
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVF-LVPC---SFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 147 SSLGGLSSLKHLSLGTNELN 166
           +  G   SL+ L L  N L 
Sbjct: 355 ACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
               F     L  L++   ++           L S++++  L L L+     +      L
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQS----LKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 153 SSLKHLSLGTNELNG 167
           SS+++L L    L  
Sbjct: 196 SSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDR--LSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
                 L+ L L  + I        ++     SL +L+ LDL+ NH ++   S  G LSS
Sbjct: 46  LRACANLQVLILKSSRINT------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

Query: 155 LKHLSLGTNELN 166
           LK+L+L  N   
Sbjct: 100 LKYLNLMGNPYQ 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
           S      +L+ L +S N +        L   S    L  + ++ N   +        L+S
Sbjct: 445 SFSLFLPRLQELYISRNKLKT------LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 155 LKHLSLGTN 163
           L+ + L TN
Sbjct: 499 LQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSSLGGLSSL 155
           F     LE LDLS N+++    +        L +LK+L+L  N +    + S    L++L
Sbjct: 70  FYSLGSLEHLDLSDNHLS----SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 156 KHLSLGTNELNGSID 170
           + L +G  E    I 
Sbjct: 126 QTLRIGNVETFSEIR 140

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
             +    + L  LD+S N           D     + ++FL+L+       + +      
Sbjct: 380 GEILLTLKNLTSLDISRNTFHPM-----PDSCQWPEKMRFLNLSSTGI-RVVKT--CIPQ 431

Query: 154 SLKHLSLGTNELN 166
           +L+ L +  N L+
Sbjct: 432 TLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 92  MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIF-SSLG 150
           +++S F P   L++L+L GN     +    L    +L NL+ L +      + I      
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSL--FPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 151 GLSSLKHLSLGTNELN 166
           GL+SL  L +    L 
Sbjct: 146 GLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
              ++ LDLS N IT  + +  L   +   NL+ L L  +  N     +   L SL+HL 
Sbjct: 25  TAAMKSLDLSFNKITY-IGHGDLRACA---NLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 160 LGTNEL 165
           L  N L
Sbjct: 81  LSDNHL 86

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 91  YMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN--SIFSS 148
            +  S     + LEFLDLS N +             +  +L+ L L+ NH  +       
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC-KGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 149 LGGLSSLKHLSLGTNELN 166
           L  L +L  L +  N  +
Sbjct: 383 LLTLKNLTSLDISRNTFH 400

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 96  LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSL 155
           L   F  LEFL L    +        +  L  L  LK L+L+ N     +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGLIS------VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 156 KHLSLGTNELNGSIDIE 172
            HL+L  N+L     +E
Sbjct: 98  THLNLSGNKLKDISTLE 114

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSSLGGLSSL 155
                +L+ L+LS N I G +          L NL  L+L+ N   + S    L  L  L
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLA----EKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122

Query: 156 KHLSLGTNEL 165
           K L L   E+
Sbjct: 123 KSLDLFNCEV 132

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
              L  L+L  N IT       L  L +L  +  L+L+ N   N   S++ GL S+K L 
Sbjct: 62  LNNLIGLELKDNQITD------LAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLD 113

Query: 160 LGTNELNGSIDIEG 173
           L + ++     + G
Sbjct: 114 LTSTQITDVTPLAG 127

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                 +  L   G  +T       ++ +  L NL  L+L  N   +   + L  L+ + 
Sbjct: 37  QADLDGITTLSAFGTGVT------TIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 157 HLSLGTNELN 166
            L L  N L 
Sbjct: 89  ELELSGNPLK 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
               Q ++ LDL+   IT       +  L+ L NL+ L L LN   N   S L GL++L+
Sbjct: 103 IAGLQSIKTLDLTSTQIT------DVTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQ 154

Query: 157 HLSLGTNEL 165
           +LS+G  ++
Sbjct: 155 YLSIGNAQV 163

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
              L+ L L  N IT       +  L+ L NL++L +     ++   + L  LS L  L 
Sbjct: 128 LSNLQVLYLDLNQITN------ISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLK 179

Query: 160 LGTNEL 165
              N++
Sbjct: 180 ADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                +L  L    N I+       +  L+SL NL  + L  N  ++   S L   S+L 
Sbjct: 169 LANLSKLTTLKADDNKIS------DISPLASLPNLIEVHLKNNQISD--VSPLANTSNLF 220

Query: 157 HLSLGTNEL 165
            ++L    +
Sbjct: 221 IVTLTNQTI 229

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
             +L  L L  NN+T          L +   L  +DL+ N     ++     +  L+ L 
Sbjct: 225 NVELTILKLQHNNLTD------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 160 LGTNEL 165
           +  N L
Sbjct: 279 ISNNRL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
           A+L   F+Q+E L+L+   I            +    ++ L +  N            + 
Sbjct: 62  AALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 154 SLKHLSLGTNEL 165
            L  L L  N+L
Sbjct: 118 LLTVLVLERNDL 129

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 7/69 (10%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                  + +    + +   +       L S + ++ L+L           +     +++
Sbjct: 41  DITLNNQKIVTFKNSTMRK-LPAAL---LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 157 HLSLGTNEL 165
            L +G N +
Sbjct: 97  KLYMGFNAI 105

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
           +    +  L  +DLS N +   +          ++ L+ L ++ N    ++      + +
Sbjct: 242 AWLLNYPGLVEVDLSYNELEK-IMY---HPFVKMQRLERLYISNNRL-VALNLYGQPIPT 296

Query: 155 LKHLSLGTNEL 165
           LK L L  N L
Sbjct: 297 LKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 14/81 (17%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLS------------SLKNLKFLDLTLNHFNNS 144
            +    L   ++S N ++       ++ L                 L  L L  N+  + 
Sbjct: 182 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD- 240

Query: 145 IFSSLGGLSSLKHLSLGTNEL 165
             + L     L  + L  NEL
Sbjct: 241 -TAWLLNYPGLVEVDLSYNEL 260

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDR-LSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
              F   Q+LE L +S N +        L+     +  LK LDL+ NH    +  +    
Sbjct: 265 YHPFVKMQRLERLYISNNRLV------ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQF 317

Query: 153 SSLKHLSLGTNEL 165
             L++L L  N +
Sbjct: 318 DRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDR--LSSLKNLKFLDLTLNHFNNSIFSSLGG 151
             +F     L  L L  N+++       L R    +   L  L ++ N+       +   
Sbjct: 110 PHVFQNVPLLTVLVLERNDLS------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 152 LSSLKHLSLGTNEL 165
            +SL++L L +N L
Sbjct: 164 TTSLQNLQLSSNRL 177

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
           +   F     ++ L +  N I   +         ++  L  L L  N  ++         
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIRY-LPP---HVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

Query: 153 SSLKHLSLGTNEL 165
             L  LS+  N L
Sbjct: 141 PKLTTLSMSNNNL 153

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
              F     L+ L LS N +T       +D LS + +L   +++ N       S+L    
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT------HVD-LSLIPSLFHANVSYNL-----LSTLAIPI 205

Query: 154 SLKHLSLGTNELN 166
           +++ L    N +N
Sbjct: 206 AVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDR-LSSLKNLKFLDLTLNHFNNSIFS-SLGGLSS 154
             P   L+ LDLS N++        ++R       L+ L L     +NSI +  L    +
Sbjct: 291 GQPIPTLKVLDLSHNHLL------HVERNQPQFDRLENLYLD----HNSIVTLKLSTHHT 340

Query: 155 LKHLSLGTNELN 166
           LK+L+L  N+ +
Sbjct: 341 LKNLTLSHNDWD 352

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
             +L  L L  NN+T          L +   L  +DL+ N     ++     +  L+ L 
Sbjct: 231 NVELTILKLQHNNLTD------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 160 LGTNEL 165
           +  N L
Sbjct: 285 ISNNRL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
           A+L   F+Q+E L+L+   I            +    ++ L +  N            + 
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 154 SLKHLSLGTNELN 166
            L  L L  N+L+
Sbjct: 124 LLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDR-LSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
              F   Q+LE L +S N +        L+     +  LK LDL+ NH    +  +    
Sbjct: 271 YHPFVKMQRLERLYISNNRLV------ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQF 323

Query: 153 SSLKHLSLGTNEL 165
             L++L L  N +
Sbjct: 324 DRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 8e-05
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 14/81 (17%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRL------------SSLKNLKFLDLTLNHFNNS 144
            +    L   ++S N ++       ++ L                 L  L L  N+  + 
Sbjct: 188 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD- 246

Query: 145 IFSSLGGLSSLKHLSLGTNEL 165
             + L     L  + L  NEL
Sbjct: 247 -TAWLLNYPGLVEVDLSYNEL 266

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 7/69 (10%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                  + +    + +   +       L S + ++ L+L           +     +++
Sbjct: 47  DITLNNQKIVTFKNSTMRK-LPAAL---LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 157 HLSLGTNEL 165
            L +G N +
Sbjct: 103 KLYMGFNAI 111

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
           + +    +  L  +DLS N +   +          ++ L+ L ++ N    ++      +
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELEK-IMY---HPFVKMQRLERLYISNNRL-VALNLYGQPI 300

Query: 153 SSLKHLSLGTNEL 165
            +LK L L  N L
Sbjct: 301 PTLKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
              F     L+ L LS N +T          LS + +L   +++ N       S+L    
Sbjct: 164 DDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNL-----LSTLAIPI 211

Query: 154 SLKHLSLGTNELN 166
           +++ L    N +N
Sbjct: 212 AVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 4/72 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
              F     ++ L +  N I   +         ++  L  L L  N  ++          
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRY-LPP---HVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147

Query: 154 SLKHLSLGTNEL 165
            L  LS+  N L
Sbjct: 148 KLTTLSMSNNNL 159

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDR--LSSLKNLKFLDLTLNHFNNSIFSSLGG 151
           +  F     L  LDL         +   +       L NL++L+L + +       +L  
Sbjct: 153 SYAFNRIPSLRRLDLGELK-----RLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTP 205

Query: 152 LSSLKHLSLGTNEL 165
           L  L  L L  N L
Sbjct: 206 LIKLDELDLSGNHL 219

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS----SL 149
              F    +L+ L L  N I   + +   +R+    +L+ LDL        +      + 
Sbjct: 129 NGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIP---SLRRLDL---GELKRLSYISEGAF 181

Query: 150 GGLSSLKHLSLGTNELN 166
            GLS+L++L+L    L 
Sbjct: 182 EGLSNLRYLNLAMCNLR 198

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
            TP  +L+ LDLSGN+++  ++      L  L+ L  +   +     + F     L SL 
Sbjct: 203 LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD---NLQSLV 258

Query: 157 HLSLGTNEL 165
            ++L  N L
Sbjct: 259 EINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 16/78 (20%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDR--LSSLKNLKFLDLTLNHFNNSIFS---- 147
            + F   + LE L LS N+I        ++    + L NL  L+L     +N + +    
Sbjct: 81  VNSFKHLRHLEILQLSRNHIR------TIEIGAFNGLANLNTLELF----DNRLTTIPNG 130

Query: 148 SLGGLSSLKHLSLGTNEL 165
           +   LS LK L L  N +
Sbjct: 131 AFVYLSKLKELWLRNNPI 148

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
                 L+L  N I     N        L++L+ L L+ NH       +  GL++L  L 
Sbjct: 63  STNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 160 LGTNEL 165
           L  N L
Sbjct: 119 LFDNRL 124

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
           A+       L  L LS N+I+  V N  L       +L+ L L  N     +   L    
Sbjct: 209 AASLKGLNNLAKLGLSFNSIS-AVDNGSLANTP---HLRELHLNNNKL-VKVPGGLADHK 263

Query: 154 SLKHLSLGTNELN 166
            ++ + L  N ++
Sbjct: 264 YIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNH---FNNSIFSSLG--- 150
                 L  L L+ N +   V       L+  K ++ + L  N+     ++ F   G   
Sbjct: 236 LANTPHLRELHLNNNKLV-KVPGG----LADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290

Query: 151 GLSSLKHLSLGTNEL 165
             +S   +SL +N +
Sbjct: 291 KKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 23/93 (24%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHF------------ 141
            S+F    Q+  ++L  N +       G      +K L ++ +   +             
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTNITTIPQGLPPSLT 195

Query: 142 -----NNSI----FSSLGGLSSLKHLSLGTNEL 165
                 N I     +SL GL++L  L L  N +
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 19/92 (20%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLK------------------NLKFL 134
               F   + L  L L  N I+  +       L  L+                   L+ L
Sbjct: 68  KDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 126

Query: 135 DLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN 166
            +  N       S   GL+ +  + LGTN L 
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 15/79 (18%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI--FSSLGGLSS 154
                 +  L L+GN +T       +  L++LKNL +L L      N +   SSL  L  
Sbjct: 64  IQYLPNVTKLFLNGNKLTD------IKPLANLKNLGWLFLD----ENKVKDLSSLKDLKK 113

Query: 155 LKHLSLGTNELNGSIDIEG 173
           LK LSL  N ++   DI G
Sbjct: 114 LKSLSLEHNGIS---DING 129

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 12/71 (16%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI--FSSLGGLSS 154
                QLE L L  N IT       +  LS L  L  L L     +N I     L GL+ 
Sbjct: 130 LVHLPQLESLYLGNNKIT------DITVLSRLTKLDTLSLE----DNQISDIVPLAGLTK 179

Query: 155 LKHLSLGTNEL 165
           L++L L  N +
Sbjct: 180 LQNLYLSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 12/66 (18%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI--FSSLGGLSSLKHLS 159
           +L+ L L  N I+       ++ L  L  L+ L L     NN I   + L  L+ L  LS
Sbjct: 113 KLKSLSLEHNGISD------INGLVHLPQLESLYLG----NNKITDITVLSRLTKLDTLS 162

Query: 160 LGTNEL 165
           L  N++
Sbjct: 163 LEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 21/90 (23%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRL----------------SSLKNLKFLDLTLNHFNN 143
           F +    +L   ++T  V    L+ +                  L N+  L L  N   +
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD 82

Query: 144 SIFSSLGGLSSLKHLSLGTNELNGSIDIEG 173
                L  L +L  L L  N++    D+  
Sbjct: 83  --IKPLANLKNLGWLFLDENKVK---DLSS 107

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDR--LSSLKNLKFLDLTLNHFNNSIFSSLGG 151
           +  F     L  LDL         + E +       L NLK+L+L + +  +    +L  
Sbjct: 164 SYAFNRVPSLMRLDLGELK-----KLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTP 216

Query: 152 LSSLKHLSLGTNEL 165
           L  L+ L +  N  
Sbjct: 217 LVGLEELEMSGNHF 230

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 16/78 (20%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDR--LSSLKNLKFLDLTLNHFNNSIFS---- 147
           A  F     LE L L  N+I        ++    + L +L  L+L     +N +      
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIR------QIEVGAFNGLASLNTLELF----DNWLTVIPSG 141

Query: 148 SLGGLSSLKHLSLGTNEL 165
           +   LS L+ L L  N +
Sbjct: 142 AFEYLSKLRELWLRNNPI 159

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
                +L+L  NNI     +        L +L+ L L  N        +  GL+SL  L 
Sbjct: 74  PSNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 160 LGTNEL 165
           L  N L
Sbjct: 130 LFDNWL 135

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
            TP   LE L++SGN+    ++      LSSLK L  ++  ++    + F    GL+SL 
Sbjct: 214 LTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFD---GLASLV 269

Query: 157 HLSLGTNEL 165
            L+L  N L
Sbjct: 270 ELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
              F     L+ L +  + ++  ++         L +L  L+L  N+ ++        L 
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSL-IERNAF---DGLASLVELNLAHNNLSSLPHDLFTPLR 290

Query: 154 SLKHLSLGTN 163
            L  L L  N
Sbjct: 291 YLVELHLHHN 300

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 96  LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSL 155
           L     Q + +D S N I        LD    L+ LK L +  N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEIRK------LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 156 KHLSLGTNELN 166
             L L  N L 
Sbjct: 91  TELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSSLGGLSSL 155
           F   ++L+ L ++ N I    +        +L +L  L LT N          L  L SL
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGL----DQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 156 KHLSLGTNEL 165
            +L +  N +
Sbjct: 116 TYLCILRNPV 125

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
            S+     +L+ + L G  +   V+         L  L+ L+++ N       S    + 
Sbjct: 265 GSMLHELLRLQEIQLVGGQLA-VVEP---YAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 154 SLKHLSLGTNELN 166
           +L+ L L +N L 
Sbjct: 321 NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
             +F     L+ L++  N++   + +      S L +L+ L L   +  +    +L  L 
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV-YISH---RAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176

Query: 154 SLKHLSLGTNELN 166
            L  L L    +N
Sbjct: 177 GLIVLRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
                +    L  L L   NI   +++    RL     LK L+++   + +++  +    
Sbjct: 168 PTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLY---RLKVLEISHWPYLDTMTPNCLYG 223

Query: 153 SSLKHLSLGTNEL 165
            +L  LS+    L
Sbjct: 224 LNLTSLSITHCNL 236

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
           N   F  F  LE L+L+ N ++           ++L NL+ L L  N           GL
Sbjct: 48  NQDEFASFPHLEELELNENIVS----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103

Query: 153 SSLKHLSLGTNELN 166
           S+L  L +  N++ 
Sbjct: 104 SNLTKLDISENKIV 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
             +   LDL  N I    Q+E     +S  +L+ L+L  N  +     +   L +L+ L 
Sbjct: 31  PTETRLLDLGKNRIKTLNQDE----FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86

Query: 160 LGTNEL 165
           L +N L
Sbjct: 87  LRSNRL 92

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
                    L FL+LS N I+  ++      L  L  L+ + L           +  GL+
Sbjct: 241 YLAVRHLVYLRFLNLSYNPIS-TIEG---SMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 154 SLKHLSLGTNEL 165
            L+ L++  N+L
Sbjct: 297 YLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
           F     L  L L  N +   +       LS   NL  LD++ N     +      L +LK
Sbjct: 76  FNNLFNLRTLGLRSNRLK-LIPLGVFTGLS---NLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 157 HLSLGTNEL 165
            L +G N+L
Sbjct: 132 SLEVGDNDL 140

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
           F+    LE L L   N+T          LS L  L  L L   + N     S   L  LK
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEA----LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 157 HLSLGTNELNGSID 170
            L +       ++ 
Sbjct: 204 VLEISHWPYLDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 103 LEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGT 162
           L  L ++  N+T  V       +  L  L+FL+L+ N  +    S L  L  L+ + L  
Sbjct: 226 LTSLSITHCNLTA-VPY---LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

Query: 163 NEL 165
            +L
Sbjct: 282 GQL 284

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN---NSIFSSLG 150
            + F P   LE L L  NNI   +Q        +++    LDLT N           +  
Sbjct: 122 GNFFKPLTSLEMLVLRDNNIK-KIQPASFF--LNMRRFHVLDLTFNKVKSICEEDLLNFQ 178

Query: 151 GLSSLKHLSLGTNEL 165
           G      L L +  L
Sbjct: 179 GK-HFTLLRLSSITL 192

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 93  NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL 152
           N + F+  Q L+FL +        ++N     LS   +L  L L  N F      +  GL
Sbjct: 46  NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS---SLIILKLDYNQFLQLETGAFNGL 102

Query: 153 SSLKHLSLGTNELNGSI 169
           ++L+ L+L    L+G++
Sbjct: 103 ANLEVLTLTQCNLDGAV 119

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
           + +F    +LE LDLS N+I   + ++    L +LK L      L    + IF     L+
Sbjct: 340 SRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR---LT 395

Query: 154 SLKHLSLGTN 163
           SL+ + L TN
Sbjct: 396 SLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 20/133 (15%)

Query: 36  LQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNAS 95
           L L + +N      + N      D   ++G+E +         DL+  K  +    +  S
Sbjct: 244 LILSNSYNMGSSFGHTN--FKDPDNFTFKGLEASGVK----TCDLSKSKIFA----LLKS 293

Query: 96  LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHF---NNSIFSSLGGL 152
           +F+ F  LE L L+ N I   + +     L+   +L  L+L+ N     ++ +F     L
Sbjct: 294 VFSHFTDLEQLTLAQNEINK-IDDNAFWGLT---HLLKLNLSQNFLGSIDSRMFE---NL 346

Query: 153 SSLKHLSLGTNEL 165
             L+ L L  N +
Sbjct: 347 DKLEVLDLSYNHI 359

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSS-------LKNLKFLDLTLNHFNNSIF 146
           AS F   ++   LDL+ N +   +  E L            L ++   D+          
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 147 SSLGGLSSLKHLSLGTNELNGS 168
            +    +S+  L L  N    S
Sbjct: 206 GNPFKNTSITTLDLSGNGFKES 227

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
           A + T  + L+ LD+S N+++   +          K+L  L+++ N   ++IF  L    
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCS---WTKSLLSLNMSSNILTDTIFRCL--PP 421

Query: 154 SLKHLSLGTNELN 166
            +K L L +N++ 
Sbjct: 422 RIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 12/75 (16%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLS--SLKNLKFLDLTLNHFNN-SIFSSLG 150
            S+F   Q+LE+LDLS N +           +S     NLK LDL+ N F+   I    G
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVK---------ISCHPTVNLKHLDLSFNAFDALPICKEFG 112

Query: 151 GLSSLKHLSLGTNEL 165
            +S LK L L T  L
Sbjct: 113 NMSQLKFLGLSTTHL 127

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
             LF+  Q LE L L  N+I   V     + ++ L+ L      ++ F   +      L 
Sbjct: 105 EFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 154 SLKHLSLGTNEL 165
            L  L L +N+L
Sbjct: 164 KLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 14/74 (18%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDR--LSSLKNLKFLDLTLNH---FNNSIFSSLGG 151
            T    L  L LS N++        +       + NL++LDL+ NH    +  +FS    
Sbjct: 60  PTRLTNLHSLLLSHNHLN------FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS---D 110

Query: 152 LSSLKHLSLGTNEL 165
           L +L+ L L  N +
Sbjct: 111 LQALEVLLLYNNHI 124

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
                 + +L  L L  N I   ++N  L     L  L+ L L  N   + + + L  L 
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIR-MIENGSLS---FLPTLRELHLDNNKL-SRVPAGLPDLK 264

Query: 154 SLKHLSLGTNEL 165
            L+ + L TN +
Sbjct: 265 LLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 25/96 (26%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHF------------ 141
              F   Q L  L L  N I+  +  +     S L+ L+ L ++ NH             
Sbjct: 71  KDDFKGLQHLYALVLVNNKISK-IHEKAF---SPLRKLQKLYISKNHLVEIPPNLPSSLV 126

Query: 142 -----NNSIFS----SLGGLSSLKHLSLGTNELNGS 168
                +N I         GL ++  + +G N L  S
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNH---FNNSIFSSLG--- 150
            +    L  L L  N ++  V       L  LK L+ + L  N+      + F  +G   
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVP----AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 151 GLSSLKHLSLGTNEL 165
             +    +SL  N +
Sbjct: 292 KRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
            + L  L L  N I        L+ L     L  L L  N        SL  L +L+ L 
Sbjct: 192 PETLNELHLDHNKIQ----AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 160 LGTNEL 165
           L  N+L
Sbjct: 248 LDNNKL 253

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
              +  LDLS N +           L++L+ L+ L  + N   N     +  L  L+ L 
Sbjct: 462 LLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALEN--VDGVANLPRLQELL 514

Query: 160 LGTNELNGSIDIE 172
           L  N L  S  I+
Sbjct: 515 LCNNRLQQSAAIQ 527

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSSLGGLSSL 155
               + LE L  S N +        +D +++L  L+ L L  N     +    L     L
Sbjct: 482 LAALRCLEVLQASDNALE------NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 156 KHLSLGTNEL 165
             L+L  N L
Sbjct: 536 VLLNLQGNSL 545

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
            +   P+ +L  L+L    +T       L    +L  L  LDL+ N    S+      L 
Sbjct: 48  LATLMPYTRLTQLNLDRAELT------KLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLP 100

Query: 154 SLKHLSLGTNEL 165
           +L  L +  N L
Sbjct: 101 ALTVLDVSFNRL 112

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS-----IFSS 148
                  Q +  L L        +    +D  SS++ L+  D  L+ F+ S       +S
Sbjct: 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 149 LGGLSSLKHLSLGTNEL 165
           L    + +++ +    L
Sbjct: 250 LIKKFTFRNVKITDESL 266

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNH---FNNSIFSSLG 150
            S       L+ L L+ N I      E     SSL +L+ LDL+ N+    ++S F    
Sbjct: 69  NSDLQRCVNLQALVLTSNGIN--TIEEDS--FSSLGSLEHLDLSYNYLSNLSSSWFK--- 121

Query: 151 GLSSLKHLSLGTNEL 165
            LSSL  L+L  N  
Sbjct: 122 PLSSLTFLNLLGNPY 136

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLT-LNHFNNSIFSSLGGL 152
           +S F P   L FL+L GN      +      L+ L+ L+  ++          F+   GL
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA---GL 173

Query: 153 SSLKHLSLGTNEL 165
           + L+ L +  ++L
Sbjct: 174 TFLEELEIDASDL 186

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 5/78 (6%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGC----VQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSL 149
                    +E L+L   ++       +     + L      + + +T       +   L
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLL 273

Query: 150 GGLSSLKHLSLGTNELNG 167
             +S L  L    N+L  
Sbjct: 274 NQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 37.8 bits (88), Expect = 9e-04
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 103 LEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGT 162
           ++ LDLS N IT    ++    L    NL+ L LT N  N     S   L SL+HL L  
Sbjct: 54  VKSLDLSNNRITYISNSD----LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 163 NEL 165
           N L
Sbjct: 110 NYL 112

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
             LF     L++L L  N +   + ++    L    NL  L L  N  ++    +  GL 
Sbjct: 122 PGLFRGLAALQYLYLQDNALQA-LPDDTFRDLG---NLTHLFLHGNRISSVPERAFRGLH 177

Query: 154 SLKHLSLGTNELN 166
           SL  L L  N + 
Sbjct: 178 SLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
           A+ FT    LE LDLS N     V       L     L  L L              GL+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG---RLHTLHLDRCGLQELGPGLFRGLA 129

Query: 154 SLKHLSLGTNEL 165
           +L++L L  N L
Sbjct: 130 ALQYLYLQDNAL 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 4/72 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
              F     L  L L GN I+  V          L +L  L L  N   +    +   L 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISS-VPE---RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 154 SLKHLSLGTNEL 165
            L  L L  N L
Sbjct: 202 RLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
              F     L+ L L  N +   V       L  L  L    L  N+ +     +L  L 
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTL---YLFANNLSALPTEALAPLR 225

Query: 154 SLKHLSLGTN 163
           +L++L L  N
Sbjct: 226 ALQYLRLNDN 235

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 3/69 (4%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
               + L  L +        ++   L  L  L+NL  +   L       F        L 
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---FTPRLS 83

Query: 157 HLSLGTNEL 165
            L+L  N L
Sbjct: 84  RLNLSFNAL 92

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 96  LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSSLGGLSS 154
           L      LE L +S N I        L  +  L NL+ L ++ N   N      L  L  
Sbjct: 88  LDAVADTLEELWISYNQI------ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 155 LKHLSLGTN 163
           L+ L L  N
Sbjct: 142 LEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 27/94 (28%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDL-------------------TLNH 140
            +  + L LS NNI   + +     LS ++NL+ L L                    L  
Sbjct: 47  LKACKHLALSTNNIE-KISS-----LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100

Query: 141 FNNSI--FSSLGGLSSLKHLSLGTNELNGSIDIE 172
             N I   S +  L +L+ L +  N++    +I+
Sbjct: 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEID 134

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 15/76 (19%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI--FSSLGGLSSLKH 157
              ++  +   +NI        L  +    NLK L L+    +N I   S L  L+ L+ 
Sbjct: 40  LSGVQNFNGDNSNIQS------LAGMQFFTNLKELHLS----HNQISDLSPLKDLTKLEE 89

Query: 158 LSLGTNELNGSIDIEG 173
           LS+  N L    ++ G
Sbjct: 90  LSVNRNRLK---NLNG 102

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 11/74 (14%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLS 159
                  +L   ++T       L     L  ++  +   ++  +   + +   ++LK L 
Sbjct: 18  LANAVKQNLGKQSVT------DLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 160 LGTNELNGSIDIEG 173
           L  N+++   D+  
Sbjct: 70  LSHNQIS---DLSP 80

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 8/64 (12%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLG 161
            LE L +  N +        +  L  L  L+ LDL  N   N     L  L  +  + L 
Sbjct: 129 NLEILSIRNNKLKS------IVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLT 180

Query: 162 TNEL 165
             + 
Sbjct: 181 GQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 102 QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLG 161
           +LE L ++ N +           L+ + +     L L++       SL  L +L+ LS+ 
Sbjct: 86  KLEELSVNRNRLK---------NLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIR 136

Query: 162 TNEL 165
            N+L
Sbjct: 137 NNKL 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 101 QQLEFLDLSGNNITGCV-----QNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSL 155
            +L  L +        +       +       L NL+ L L       S+ +S+  L +L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 156 KHLSLGTNEL 165
           K L +  + L
Sbjct: 209 KSLKIRNSPL 218

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLT-LNHFNNSIFSSLGGLSSL 155
           F+ F  LE +++S N++   ++ +    L  L  ++      L + N   F     L +L
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNL 106

Query: 156 KHLSLGTNEL 165
           ++L +    +
Sbjct: 107 QYLLISNTGI 116

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 79  DLAFRKRDSAEWYMNASLFTPFQQ---LEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLD 135
           D  F    +A + M A+     +Q   L  LD   ++IT       +  +  L  L  L 
Sbjct: 17  DDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD------MTGIEKLTGLTKLI 70

Query: 136 LTLNHFNNSIFS-SLGGLSSLKHLSLGTNELNGSIDIEG 173
            T    +N+I +  L   ++L +L+  +N+L  ++D+  
Sbjct: 71  CT----SNNITTLDLSQNTNLTYLACDSNKLT-NLDVTP 104

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
                 L  L  + NNIT       LD LS   NL +L    N   N     +  L+ L 
Sbjct: 60  IEKLTGLTKLICTSNNITT------LD-LSQNTNLTYLACDSNKLTN---LDVTPLTKLT 109

Query: 157 HLSLGTNEL 165
           +L+  TN+L
Sbjct: 110 YLNCDTNKL 118

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK 156
            +   +L +L L+   +T       LD +S    LK L     H  +  FSS+G + +L 
Sbjct: 314 LSQNPKLVYLYLNNTELT------ELD-VSHNTKLKSLSCVNAHIQD--FSSVGKIPALN 364

Query: 157 HLSLGTNEL 165
           +      + 
Sbjct: 365 NNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 15/88 (17%)

Query: 97  FTPFQQLEFLDLSGNNITG-------------CVQNEGLDRLSSLKNLKFLDLTLNHFNN 143
            TP  QL + D S N +T              C+Q + L  +    N + +         
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD-LLEIDLTHNTQLIYFQAEGCRK 287

Query: 144 SIFSSLGGLSSLKHLSLGTNELNGSIDI 171
                +   + L  L      +   +D+
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGIT-ELDL 314

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 37.7 bits (88), Expect = 9e-04
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 13/78 (16%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS-SLGGLSSL 155
            TP  QL  LD S N IT       LD +S  K L  L+       N+I    L     L
Sbjct: 166 VTPQTQLTTLDCSFNKITE------LD-VSQNKLLNRLNC----DTNNITKLDLNQNIQL 214

Query: 156 KHLSLGTNELNGSIDIEG 173
             L   +N+L   ID+  
Sbjct: 215 TFLDCSSNKLT-EIDVTP 231

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 10/72 (13%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLN---HFNNSIFSSLGGLS 153
           F+P+++L  +DLS N I+  +  +       L++L  L L  N       S+F    GL 
Sbjct: 52  FSPYKKLRRIDLSNNQISE-LAPDAFQG---LRSLNSLVLYGNKITELPKSLFE---GLF 104

Query: 154 SLKHLSLGTNEL 165
           SL+ L L  N++
Sbjct: 105 SLQLLLLNANKI 116

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS 153
            SLF     L+ L L+ N I  C++ +    L +L  L   D  L       FS L    
Sbjct: 97  KSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL---R 152

Query: 154 SLKHLSLGTN 163
           +++ + L  N
Sbjct: 153 AIQTMHLAQN 162

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 18/87 (20%)

Query: 97  FTPFQQLEFLDLSGNNIT--------GCVQNEGLD----RLSS-----LKNLKFLDLTLN 139
            +   +L  L LS N I              E LD    RL +     + +L+ LDL+ N
Sbjct: 72  ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFN 131

Query: 140 HFNN-SIFSSLGGLSSLKHLSLGTNEL 165
            F+   +    G L+ L  L L   + 
Sbjct: 132 DFDVLPVCKEFGNLTKLTFLGLSAAKF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
            +++ LDL  N I      + +  L     L+ L++  N   +        L+SL+++ L
Sbjct: 450 PKVKVLDLHNNRIM--SIPKDVTHLQ---ALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504

Query: 161 GTN 163
             N
Sbjct: 505 HDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 77  KLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDL 136
            L+      +S   +         + +  L+LS N +TG V       L     +K LDL
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV----FRCLPP--KVKVLDL 457

Query: 137 TLNHFNNSIFSSLGGLSSLKHLSLGTNEL 165
             N    SI   +  L +L+ L++ +N+L
Sbjct: 458 HNNRI-MSIPKDVTHLQALQELNVASNQL 485

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 11/72 (15%)

Query: 100 FQQLEFLDLSGNNITGCVQNEGLDRL-SSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHL 158
              +  L +  NN+T          L +    L+ L+++ N    S+     GL  L   
Sbjct: 60  PAHITTLVIPDNNLT---------SLPALPPELRTLEVSGNQL-TSLPVLPPGLLELSIF 109

Query: 159 SLGTNELNGSID 170
           S     L     
Sbjct: 110 SNPLTHLPALPS 121

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKF-LDLTLNHFN---NSIFSSL 149
              F+    LE LDLS N I   +    L  L  +  L   LDL+LN  N      F  +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 150 GGLSSLKHLSLGTNEL 165
                LK L+L TN+L
Sbjct: 201 ----RLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNH---FNNSIFSSLG 150
           +  F  F +L+ LDLS   I      +G     SL +L  L LT N         FS   
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ--TIEDGA--YQSLSHLSTLILTGNPIQSLALGAFS--- 97

Query: 151 GLSSLKHLSLGTNEL 165
           GLSSL+ L      L
Sbjct: 98  GLSSLQKLVAVETNL 112

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNH---FNNSIFSSLGG 151
            +F    QL  ++ S N IT  ++    +  S    +  + LT N      + +F    G
Sbjct: 51  GIFKKLPQLRKINFSNNKITD-IEEGAFEGAS---GVNEILLTSNRLENVQHKMFK---G 103

Query: 152 LSSLKHLSLGTNEL 165
           L SLK L L +N +
Sbjct: 104 LESLKTLMLRSNRI 117

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 97  FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHF---NNSIFSSLGGLS 153
           F     +  + L+ N +   VQ++    L    +LK L L  N      N  F    GLS
Sbjct: 77  FEGASGVNEILLTSNRLEN-VQHKMFKGLE---SLKTLMLRSNRITCVGNDSFI---GLS 129

Query: 154 SLKHLSLGTNEL 165
           S++ LSL  N++
Sbjct: 130 SVRLLSLYDNQI 141

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 101 QQLEFLDLSGNNITGCVQNEGLDRLSS-LKNLKFLDLTLNHFNN----SIFSSLGGLSSL 155
             ++ LD+    ++    +     L   L+  + + L            I S+L    +L
Sbjct: 3   LDIQSLDIQCEELS----DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 156 KHLSLGTNELNGS 168
             L+L +NEL   
Sbjct: 59  AELNLRSNELGDV 71

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 13/81 (16%)

Query: 94  ASLFTPFQQLEFLDLSGNNITGCVQNEGLDR-----LSSLKNLKFLDLTLNHFNN----S 144
           A  F   + L  + +  N I      EG++      L+  + LK LDL  N F +    +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIR----PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 145 IFSSLGGLSSLKHLSLGTNEL 165
           +  +L    +L+ L L    L
Sbjct: 236 LAIALKSWPNLRELGLNDCLL 256

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 10/71 (14%)

Query: 95  SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS 154
            L      LEF+    N +        L  L +L  L  +       NNS+        S
Sbjct: 167 KLPDLPPSLEFIAAGNNQLE------ELPELQNLPFLTAIYAD----NNSLKKLPDLPLS 216

Query: 155 LKHLSLGTNEL 165
           L+ +  G N L
Sbjct: 217 LESIVAGNNIL 227

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.57
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.52
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.5
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.49
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.48
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.48
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.47
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.46
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.46
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.42
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.42
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.41
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.41
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.4
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.4
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.38
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.37
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.37
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.36
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.36
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.35
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.35
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.35
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.34
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.34
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.3
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.3
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.3
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.29
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.28
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.28
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.26
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.26
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.24
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.24
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.2
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.2
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.17
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.11
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.1
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.09
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.01
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.99
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.99
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.96
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.96
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.96
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.94
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.94
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.93
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.9
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.85
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.85
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.81
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.8
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.8
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.78
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.73
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.72
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.71
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.68
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.64
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.54
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.48
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.44
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.43
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.26
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.19
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.99
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.75
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.72
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.44
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.26
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.21
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.83
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.78
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.26
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.1
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.94
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.91
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.83
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.07

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=2.5e-23  Score=164.18  Aligned_cols=136  Identities=30%  Similarity=0.522  Sum_probs=93.5

Q ss_pred             CCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CcEEEEEcCCCCCCCCccccCcccccCCC
Q 048732           26 GCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQ--WEGVECNNTT--GRVIKLDLAFRKRDSAEWYMNASLFTPFQ  101 (174)
Q Consensus        26 ~~~~~~~~~L~~~~~~~~~~~~~~~W~~~~~~~~~C~--w~gv~c~~~~--~~v~~L~L~~n~~~~g~~~~~~~~~~~l~  101 (174)
                      .|.++|.++|++||+++.++....+|..+   .++|.  |.||.|+...  ++|++|+|++|++. +.. ..+..+..++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~---~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~-~~~-~~~~~l~~l~   76 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP-KPY-PIPSSLANLP   76 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTT---SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCS-SCE-ECCGGGGGCT
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCCCCC---CCCCcCCCcceEeCCCCCCceEEEEECCCCCcc-CCc-ccChhHhCCC
Confidence            58889999999999999877645899764   68898  9999998644  79999999999886 310 1244566677


Q ss_pred             CCCEEeCcC-CccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732          102 QLEFLDLSG-NNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       102 ~L~~L~ls~-N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      +|++|++++ |.+.+.+|..    ++.+++|++|++++|.+++.+|..|+.+++|++|++++|+++|.+|
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  142 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             CCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC
Confidence            777777773 6666666655    5555555555555555555555555555555555555555555444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.83  E-value=6.7e-21  Score=166.21  Aligned_cols=136  Identities=29%  Similarity=0.423  Sum_probs=105.2

Q ss_pred             CCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCCCCccc-cC----------
Q 048732           25 EGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWY-MN----------   93 (174)
Q Consensus        25 ~~~~~~~~~~L~~~~~~~~~~~~~~~W~~~~~~~~~C~w~gv~c~~~~~~v~~L~L~~n~~~~g~~~-~~----------   93 (174)
                      ....++|++||++||+.+.+|..+.+|..+   .+||.|.||+|+  .++|+.|+|+++.+. |.+. ++          
T Consensus         7 ~~~~~~~~~all~~k~~~~~~~~l~~W~~~---~~~C~w~gv~C~--~~~v~~L~L~~~~l~-g~~~~l~~~l~~L~~L~   80 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPDKNLLPDWSSN---KNPCTFDGVTCR--DDKVTSIDLSSKPLN-VGFSAVSSSLLSLTGLE   80 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSCTTSSTTCCTT---SCGGGSTTEEEE--TTEEEEEECTTSCCC-EEHHHHHHHTTTCTTCC
T ss_pred             ccCCHHHHHHHHHHHhhCCCcccccCCCCC---CCCcCCcceEEC--CCcEEEEECCCCCcC-CccCccChhHhccCccc
Confidence            344678999999999999988734999863   789999999998  489999999998775 3200 11          


Q ss_pred             ------------cccccCCCCCCEEeCcCCccccccCc--chhhhcCCCCCCCEEeccCCCCCCcccccc-CCCCCCCEE
Q 048732           94 ------------ASLFTPFQQLEFLDLSGNNITGCVQN--EGLDRLSSLKNLKFLDLTLNHFNNSIFSSL-GGLSSLKHL  158 (174)
Q Consensus        94 ------------~~~~~~l~~L~~L~ls~N~l~g~~p~--~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l-~~l~~L~~L  158 (174)
                                  +..+..+++|++|++++|.+.|.+|.  .    ++++++|++|++++|.+++.+|..+ ..+++|++|
T Consensus        81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  156 (768)
T 3rgz_A           81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS----LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL  156 (768)
T ss_dssp             EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGG----GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred             ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHH----HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence                        14577888888888888888888876  5    7788888888888888877777655 677777777


Q ss_pred             EccCCcccccCC
Q 048732          159 SLGTNELNGSID  170 (174)
Q Consensus       159 ~Ls~N~l~g~iP  170 (174)
                      ++++|+++|.+|
T Consensus       157 ~Ls~n~l~~~~~  168 (768)
T 3rgz_A          157 DLSANSISGANV  168 (768)
T ss_dssp             ECCSSCCEEETH
T ss_pred             ECCCCccCCcCC
Confidence            777777776554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=4.5e-20  Score=158.14  Aligned_cols=131  Identities=20%  Similarity=0.216  Sum_probs=105.8

Q ss_pred             CHHHHHHHHHHHhhCCCCCCC---------CCCCCCCCCCCCccc---cceEecCCCCcEEEEEcCCCCCCCCccccCcc
Q 048732           28 LEQERSALLQLKHFFNDSKHL---------HYWNDGENYSDCCQW---EGVECNNTTGRVIKLDLAFRKRDSAEWYMNAS   95 (174)
Q Consensus        28 ~~~~~~~L~~~~~~~~~~~~~---------~~W~~~~~~~~~C~w---~gv~c~~~~~~v~~L~L~~n~~~~g~~~~~~~   95 (174)
                      ...|+.||.++++++.+++|.         .+|+.+   .++|.|   .||.|+. .++|+.|+|+++++. |.+   ++
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~---~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~-g~l---p~   99 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN---KELDMWGAQPGVSLNS-NGRVTGLSLEGFGAS-GRV---PD   99 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS---SCGGGTTCCTTEEECT-TCCEEEEECTTSCCE-EEE---CG
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC---CCcccccCCCCeEEcC-CCCEEEEEecCcccC-CcC---Ch
Confidence            346999999999999877654         269874   789999   9999987 489999999999876 443   56


Q ss_pred             cccCCCCCCEEeCcCCcc--------------------------------------------------------------
Q 048732           96 LFTPFQQLEFLDLSGNNI--------------------------------------------------------------  113 (174)
Q Consensus        96 ~~~~l~~L~~L~ls~N~l--------------------------------------------------------------  113 (174)
                      .++.|++|+.|++++|.+                                                              
T Consensus       100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  179 (636)
T 4eco_A          100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS  179 (636)
T ss_dssp             GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred             HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence            688888888888888743                                                              


Q ss_pred             ----------------ccccCcchhhhcCCCCCCCEEeccCCCCCCc-----------------cccccC--CCCCCCEE
Q 048732          114 ----------------TGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS-----------------IFSSLG--GLSSLKHL  158 (174)
Q Consensus       114 ----------------~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~-----------------~p~~l~--~l~~L~~L  158 (174)
                                      +| +|..    ++++++|++|+|++|.++|.                 +|..++  .+++|++|
T Consensus       180 ~~~l~~l~l~~~~n~l~~-ip~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L  254 (636)
T 4eco_A          180 RITLKDTQIGQLSNNITF-VSKA----VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV  254 (636)
T ss_dssp             CCCCCTTTTTCCSCEEEE-ECGG----GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred             ccchhhhhhccccCCCcc-CCHH----HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence                            34 6665    77888888888888888875                 888888  88888888


Q ss_pred             EccCCcccccCCC
Q 048732          159 SLGTNELNGSIDI  171 (174)
Q Consensus       159 ~Ls~N~l~g~iP~  171 (174)
                      ++++|++.|.+|.
T Consensus       255 ~L~~n~l~~~~p~  267 (636)
T 4eco_A          255 EVYNCPNLTKLPT  267 (636)
T ss_dssp             EEECCTTCSSCCT
T ss_pred             EecCCcCCccChH
Confidence            8888888888885

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=4.3e-19  Score=156.79  Aligned_cols=133  Identities=17%  Similarity=0.217  Sum_probs=103.9

Q ss_pred             CCCHHHHHHHHHHHhhCCCCCCCCCCCCCC--CCCCC--ccc------------cceEecCCCCcEEEEEcCCCCCCCCc
Q 048732           26 GCLEQERSALLQLKHFFNDSKHLHYWNDGE--NYSDC--CQW------------EGVECNNTTGRVIKLDLAFRKRDSAE   89 (174)
Q Consensus        26 ~~~~~~~~~L~~~~~~~~~~~~~~~W~~~~--~~~~~--C~w------------~gv~c~~~~~~v~~L~L~~n~~~~g~   89 (174)
                      +....|..||++||+++.+|    +|+.+.  ...+|  |.|            .||.|+. .++|+.|+|+++++. |.
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~-G~  338 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK-GR  338 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE-EE
T ss_pred             ccchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC-Cc
Confidence            34567999999999999877    454431  00244  999            9999987 689999999999876 44


Q ss_pred             cccCcccccCCCCCCEEeC-cCCccccc----------------------------------------------------
Q 048732           90 WYMNASLFTPFQQLEFLDL-SGNNITGC----------------------------------------------------  116 (174)
Q Consensus        90 ~~~~~~~~~~l~~L~~L~l-s~N~l~g~----------------------------------------------------  116 (174)
                      +   |+.+++|++|+.|++ ++|.+.|.                                                    
T Consensus       339 i---p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~  415 (876)
T 4ecn_A          339 V---PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK  415 (876)
T ss_dssp             E---CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred             C---chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence            3   566888999999999 77765554                                                    


Q ss_pred             ------------------------cCcchhhhcCCCCCCCEEeccCCCCCC-----------------ccccccC--CCC
Q 048732          117 ------------------------VQNEGLDRLSSLKNLKFLDLTLNHFNN-----------------SIFSSLG--GLS  153 (174)
Q Consensus       117 ------------------------~p~~~~~~~~~l~~L~~L~ls~N~l~g-----------------~~p~~l~--~l~  153 (174)
                                              +|..    ++++++|++|+|++|.++|                 .+|..++  +++
T Consensus       416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~----l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~  491 (876)
T 4ecn_A          416 PIKKDSRISLKDTQIGNLTNRITFISKA----IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK  491 (876)
T ss_dssp             CCCCCCCCCCCTTTTTCCSCEEEEECGG----GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred             ccccccccchhhceeccccCcccchhHH----HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence                                    5555    7788888888888888887                 3888877  888


Q ss_pred             CCCEEEccCCcccccCCC
Q 048732          154 SLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g~iP~  171 (174)
                      +|++|+|++|++.|.+|.
T Consensus       492 ~L~~L~Ls~N~l~~~iP~  509 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPD  509 (876)
T ss_dssp             TCCEEEEESCTTCCSCCG
T ss_pred             CCCEEECcCCCCCccChH
Confidence            888888888888888884

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.70  E-value=3.2e-18  Score=135.79  Aligned_cols=139  Identities=15%  Similarity=0.207  Sum_probs=111.1

Q ss_pred             CCCCCCHHHHHHHHHHHhhCC-CCCCC-CCCCCC-CCCCCCccccceEecC--------CCCcEEEEEcCCCCCCCCccc
Q 048732           23 WSEGCLEQERSALLQLKHFFN-DSKHL-HYWNDG-ENYSDCCQWEGVECNN--------TTGRVIKLDLAFRKRDSAEWY   91 (174)
Q Consensus        23 ~~~~~~~~~~~~L~~~~~~~~-~~~~~-~~W~~~-~~~~~~C~w~gv~c~~--------~~~~v~~L~L~~n~~~~g~~~   91 (174)
                      +..+....|..+|.+||+.+. ++... ..|... ....++|.|.|+.|..        ...+|+.|+|++|++.    .
T Consensus        20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~----~   95 (328)
T 4fcg_A           20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP----Q   95 (328)
T ss_dssp             C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS----S
T ss_pred             eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch----h
Confidence            344556678999999999884 55433 788410 0136889999999952        3478999999999887    4


Q ss_pred             cCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732           92 MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus        92 ~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      ++ ..+..+++|++|++++|.++ .+|..    ++.+++|++|++++|+++ .+|..++.+++|++|++++|++.|.+|.
T Consensus        96 lp-~~l~~l~~L~~L~L~~n~l~-~lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~  168 (328)
T 4fcg_A           96 FP-DQAFRLSHLQHMTIDAAGLM-ELPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE  168 (328)
T ss_dssp             CC-SCGGGGTTCSEEEEESSCCC-CCCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred             cC-hhhhhCCCCCEEECCCCCcc-chhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence            44 44777999999999999998 88887    889999999999999999 8899999999999999999998888886


Q ss_pred             C
Q 048732          172 E  172 (174)
Q Consensus       172 ~  172 (174)
                      .
T Consensus       169 ~  169 (328)
T 4fcg_A          169 P  169 (328)
T ss_dssp             C
T ss_pred             h
Confidence            3

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=6.4e-16  Score=113.64  Aligned_cols=103  Identities=23%  Similarity=0.303  Sum_probs=82.5

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcc-cccCCCCCCEEeCcCCccccccCcchhhhcCCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNAS-LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKN  130 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~-~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~  130 (174)
                      |.|..+.|...         ...++.|++++|++.    .+++. .|..+++|++|++++|.+++..|..    |..+++
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~   79 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELG----RISSDGLFGRLPHLVKLELKRNQLTGIEPNA----FEGASH   79 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCC----SBCCSCSGGGCTTCCEEECCSSCCCCBCTTT----TTTCTT
T ss_pred             ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCC----ccCCccccccCCCCCEEECCCCCCCCcCHhH----cCCccc
Confidence            78888888642         237889999999876    34443 4788889999999999988777776    888888


Q ss_pred             CCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732          131 LKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       131 L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      |++|+|++|++++..|..|..+++|++|+|++|+|++.+|.
T Consensus        80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  120 (192)
T 1w8a_A           80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence            88888888888877777788888888888888888876664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.64  E-value=1.4e-15  Score=109.91  Aligned_cols=101  Identities=24%  Similarity=0.289  Sum_probs=87.2

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL  131 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L  131 (174)
                      |.|..+.|...         ...++.|+|++|++.    .+++..|..+++|++|++++|++++..+..    |..+++|
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~~L   80 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQIT----KLEPGVFDRLTQLTRLDLDNNQLTVLPAGV----FDKLTQL   80 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCC----ccChhhhcCcccCCEEECCCCCcCccChhh----ccCCCCC
Confidence            78888999652         357899999999988    566788999999999999999999655554    8899999


Q ss_pred             CEEeccCCCCCCccccccCCCCCCCEEEccCCcccccC
Q 048732          132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSI  169 (174)
Q Consensus       132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~i  169 (174)
                      ++|+|++|+|++..+..|..+++|++|+|++|++++..
T Consensus        81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            99999999999776778999999999999999998653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.63  E-value=2.3e-15  Score=113.51  Aligned_cols=104  Identities=22%  Similarity=0.270  Sum_probs=71.3

Q ss_pred             CCCccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCC
Q 048732           58 SDCCQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSL  128 (174)
Q Consensus        58 ~~~C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l  128 (174)
                      ...|.|.+|.|...         ...++.|+|++|++.    .+.+..|..+++|+.|++++|.+....+..    |..+
T Consensus        16 ~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~----~~~l   87 (229)
T 3e6j_A           16 QCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQIT----KLEPGVFDSLINLKELYLGSNQLGALPVGV----FDSL   87 (229)
T ss_dssp             TCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTC
T ss_pred             CCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccC----ccCHHHhhCccCCcEEECCCCCCCCcChhh----cccC
Confidence            57899999999752         346888999998877    344566777777777777777775333333    5667


Q ss_pred             CCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732          129 KNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       129 ~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      ++|++|+|++|++++..+..|..+++|++|+|++|+|+ .||
T Consensus        88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp  128 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP  128 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred             CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence            77777777777776555555666666666666666666 454

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=5.1e-15  Score=107.09  Aligned_cols=102  Identities=26%  Similarity=0.382  Sum_probs=80.7

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL  131 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L  131 (174)
                      |.|.++.|...         ...++.|++++|++.    .+++..|..+++|++|++++|.+++..+..    +..+++|
T Consensus         7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L   78 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSQNQIQSLPDGV----FDKLTKL   78 (177)
T ss_dssp             EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred             eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCccc----EeCHHHhcCcccccEEECCCCcceEeChhH----ccCCCcc
Confidence            78999999652         247899999999877    455666788899999999999888544444    7788888


Q ss_pred             CEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732          132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      ++|++++|++++..+..+..+++|++|++++|++++ +|.
T Consensus        79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~  117 (177)
T 2o6r_A           79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPD  117 (177)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred             CEEECCCCCccccCHHHhhCCcccCEEECcCCcceE-eCH
Confidence            888888888886666677888888888888888884 443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.61  E-value=4.8e-16  Score=135.60  Aligned_cols=94  Identities=27%  Similarity=0.476  Sum_probs=87.3

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|||++|++. |.   .|..++.++.|+.|++++|.++|.+|..    ++.+++|++|||++|+++|.+|..++.+
T Consensus       632 ~~L~~LdLs~N~l~-g~---ip~~l~~l~~L~~L~Ls~N~l~g~ip~~----l~~L~~L~~LdLs~N~l~g~ip~~l~~l  703 (768)
T 3rgz_A          632 GSMMFLDMSYNMLS-GY---IPKEIGSMPYLFILNLGHNDISGSIPDE----VGDLRGLNILDLSSNKLDGRIPQAMSAL  703 (768)
T ss_dssp             BCCCEEECCSSCCB-SC---CCGGGGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             ccccEEECcCCccc-cc---CCHHHhccccCCEEeCcCCccCCCCChH----HhCCCCCCEEECCCCcccCcCChHHhCC
Confidence            46889999999887 33   3777999999999999999999999998    9999999999999999999999999999


Q ss_pred             CCCCEEEccCCcccccCCCCCC
Q 048732          153 SSLKHLSLGTNELNGSIDIEGE  174 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP~~~~  174 (174)
                      ++|++|++++|+++|.||..|+
T Consensus       704 ~~L~~L~ls~N~l~g~iP~~~~  725 (768)
T 3rgz_A          704 TMLTEIDLSNNNLSGPIPEMGQ  725 (768)
T ss_dssp             CCCSEEECCSSEEEEECCSSSS
T ss_pred             CCCCEEECcCCcccccCCCchh
Confidence            9999999999999999998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.61  E-value=6.4e-15  Score=110.51  Aligned_cols=99  Identities=26%  Similarity=0.400  Sum_probs=62.0

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL  131 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L  131 (174)
                      |.|..+.|...         ...++.|++++|++.    .+++..|..+++|+.|++++|.+++..|..    |..+++|
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~----~~~l~~L   82 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNNQISELAPDA----FQGLRSL   82 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCC----EECTTSSTTCTTCCEEECCSSCCCEECTTT----TTTCSSC
T ss_pred             ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCC----CcCHhHhhCCCCCCEEECCCCcCCCcCHHH----hhCCcCC
Confidence            77888888642         246788888888776    455556666777777777777776555554    5566666


Q ss_pred             CEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732          132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      ++|+|++|+++...+..|..+++|++|+|++|+|++
T Consensus        83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~  118 (220)
T 2v9t_B           83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC  118 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence            666666666653333344555555555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=8.3e-15  Score=108.49  Aligned_cols=100  Identities=26%  Similarity=0.420  Sum_probs=64.2

Q ss_pred             CccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCC
Q 048732           60 CCQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKN  130 (174)
Q Consensus        60 ~C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~  130 (174)
                      .|.|.++.|...         ..+++.|++++|++.    .+++..|..+++|++|++++|.+++..+..    |..+++
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~   77 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLK----SLPNGVFDELTSLTQLYLGGNKLQSLPNGV----FNKLTS   77 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTT
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccC----cCChhhhcccccCcEEECCCCccCccChhh----cCCCCC
Confidence            388999999652         246888999988776    344555667777777777777776433333    556666


Q ss_pred             CCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732          131 LKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       131 L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      |++|++++|++++..+..|..+++|++|++++|++++
T Consensus        78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  114 (208)
T 2o6s_A           78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS  114 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc
Confidence            6666666666664444445556666666666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=1.8e-14  Score=106.15  Aligned_cols=101  Identities=26%  Similarity=0.347  Sum_probs=84.8

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL  131 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L  131 (174)
                      |.+..+.|...         ...++.|++++|++.    .++ ..|..+++|+.|++++|.+++..+..    |..+++|
T Consensus        10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~----~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~----f~~l~~L   80 (193)
T 2wfh_A           10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT----LVP-KELSNYKHLTLIDLSNNRISTLSNQS----FSNMTQL   80 (193)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC----SCC-GGGGGCTTCCEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred             eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc----hhH-HHhhcccCCCEEECCCCcCCEeCHhH----ccCCCCC
Confidence            67888888642         347899999999887    444 67889999999999999999766666    8999999


Q ss_pred             CEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732          132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      ++|+|++|++++..|..|..+++|++|+|++|+|++ +|.
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~  119 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPE  119 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB-CCT
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe-eCh
Confidence            999999999998778889999999999999999985 554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.57  E-value=2e-14  Score=107.86  Aligned_cols=71  Identities=25%  Similarity=0.242  Sum_probs=39.7

Q ss_pred             cccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732           96 LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus        96 ~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      .|..+++|++|++++|.+++..+..    |..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..|
T Consensus        76 ~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           76 AFEGASGVNEILLTSNRLENVQHKM----FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCGGG----GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             HhCCCCCCCEEECCCCccCccCHhH----hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence            3444555555555555554333333    5556666666666666665555666666666666666666665434

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=1.8e-14  Score=105.77  Aligned_cols=91  Identities=24%  Similarity=0.295  Sum_probs=82.8

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      ...++.|+|++|++.    .+.+..|..+++|++|++++|.+++..|..    |..+++|++|++++|++++..|..|..
T Consensus        53 l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~  124 (192)
T 1w8a_A           53 LPHLVKLELKRNQLT----GIEPNAFEGASHIQELQLGENKIKEISNKM----FLGLHQLKTLNLYDNQISCVMPGSFEH  124 (192)
T ss_dssp             CTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSCCCCEECSSS----STTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred             CCCCCEEECCCCCCC----CcCHhHcCCcccCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCCeeCHHHhhc
Confidence            357999999999987    455778999999999999999999877776    899999999999999999999999999


Q ss_pred             CCCCCEEEccCCcccccCC
Q 048732          152 LSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g~iP  170 (174)
                      +++|++|++++|.+++..+
T Consensus       125 l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          125 LNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CTTCCEEECTTCCBCCSGG
T ss_pred             CCCCCEEEeCCCCccCcCc
Confidence            9999999999999997654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.54  E-value=5.2e-14  Score=102.02  Aligned_cols=100  Identities=24%  Similarity=0.319  Sum_probs=82.6

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL  131 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L  131 (174)
                      |....+.|.+.         ...++.|+|++|++.    .+++..|..+++|+.|++++|.+++..+..    |..+++|
T Consensus        12 C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~~l~~L   83 (174)
T 2r9u_A           12 CDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQIT----KLEPGVFDHLVNLQQLYFNSNKLTAIPTGV----FDKLTQL   83 (174)
T ss_dssp             ECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred             ECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCcc----ccCHHHhcCCcCCCEEECCCCCCCccChhH----hCCcchh
Confidence            44555677541         357899999999887    566788999999999999999999644444    7899999


Q ss_pred             CEEeccCCCCCCccccccCCCCCCCEEEccCCccccc
Q 048732          132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGS  168 (174)
Q Consensus       132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~  168 (174)
                      ++|+|++|++++..+..|..+++|++|+|++|++...
T Consensus        84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             hEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            9999999999966666699999999999999998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.52  E-value=5.8e-14  Score=105.27  Aligned_cols=102  Identities=25%  Similarity=0.360  Sum_probs=72.4

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccC-cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMN-ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKN  130 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~-~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~  130 (174)
                      |.|..+.|...         ...++.|+|++|++.    .+. ...|..+++|+.|++++|.+++..+..    |..+++
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~----~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~~   82 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFT----VLEATGIFKKLPQLRKINFSNNKITDIEEGA----FEGASG   82 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC----EECCCCCGGGCTTCCEEECCSSCCCEECTTT----TTTCTT
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCC----ccCchhhhccCCCCCEEECCCCcCCEECHHH----hCCCCC
Confidence            66777777541         235677888888766    332 344677788888888888877555545    777888


Q ss_pred             CCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732          131 LKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       131 L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      |++|+|++|++++..|..|..+++|++|+|++|+|++..|
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  122 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN  122 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH
Confidence            8888888888876666677778888888888888876544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.50  E-value=9.4e-14  Score=110.21  Aligned_cols=98  Identities=17%  Similarity=0.267  Sum_probs=77.3

Q ss_pred             ccccceEecCC-----------CCcEEEEEcCC-CCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCC
Q 048732           61 CQWEGVECNNT-----------TGRVIKLDLAF-RKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSL  128 (174)
Q Consensus        61 C~w~gv~c~~~-----------~~~v~~L~L~~-n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l  128 (174)
                      |.|..|.|.+.           ..+++.|+|++ |++.    .+++..|..|++|+.|+|++|.+++..|..    |.++
T Consensus         8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l   79 (347)
T 2ifg_A            8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKSGLRFVAPDA----FHFT   79 (347)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC----EECGGGSCSCCCCSEEECCSSCCCEECTTG----GGSC
T ss_pred             ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCC----CcChhHhccccCCCEEECCCCccceeCHHH----hcCC
Confidence            88888999763           12488889986 8776    566777888999999999999988777766    8888


Q ss_pred             CCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732          129 KNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       129 ~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      ++|+.|+|++|+|++..+..|..++ |+.|+|.+|+|..
T Consensus        80 ~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           80 PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             cCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999999999999865555566655 8999999888763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.49  E-value=1.4e-13  Score=104.75  Aligned_cols=85  Identities=25%  Similarity=0.332  Sum_probs=42.0

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.|+|++|++.    .+.+..|..+++|++|++++|.+++..|..    +..+++|++|++++|++++..+..|..++
T Consensus        36 ~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  107 (251)
T 3m19_A           36 DTEKLDLQSTGLA----TLSDATFRGLTKLTWLNLDYNQLQTLSAGV----FDDLTELGTLGLANNQLASLPLGVFDHLT  107 (251)
T ss_dssp             TCCEEECTTSCCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             CCCEEEccCCCcC----ccCHhHhcCcccCCEEECCCCcCCccCHhH----hccCCcCCEEECCCCcccccChhHhcccC
Confidence            4666666666655    233444555555555555555555443333    44444444444444444433333444444


Q ss_pred             CCCEEEccCCccc
Q 048732          154 SLKHLSLGTNELN  166 (174)
Q Consensus       154 ~L~~L~Ls~N~l~  166 (174)
                      +|++|+|++|+|+
T Consensus       108 ~L~~L~L~~N~l~  120 (251)
T 3m19_A          108 QLDKLYLGGNQLK  120 (251)
T ss_dssp             TCCEEECCSSCCC
T ss_pred             CCCEEEcCCCcCC
Confidence            4444444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.48  E-value=2.2e-13  Score=104.76  Aligned_cols=85  Identities=27%  Similarity=0.321  Sum_probs=47.9

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.|++++|++.    .+++..|..+++|++|++++|.++. +|...   |..+++|++|++++|++++..+..|..++
T Consensus        38 ~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  109 (270)
T 2o6q_A           38 DTKKLDLQSNKLS----SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGI---FKELKNLETLWVTDNKLQALPIGVFDQLV  109 (270)
T ss_dssp             TCSEEECCSSCCS----CCCTTSSSSCTTCCEEECCSSCCSC-CCTTT---TSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred             CCCEEECcCCCCC----eeCHHHhcCCCCCCEEECCCCccCe-eChhh---hcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence            5778888887765    3445556666677777777666663 33221   44555555555555555543334444455


Q ss_pred             CCCEEEccCCccc
Q 048732          154 SLKHLSLGTNELN  166 (174)
Q Consensus       154 ~L~~L~Ls~N~l~  166 (174)
                      +|++|++++|+++
T Consensus       110 ~L~~L~l~~n~l~  122 (270)
T 2o6q_A          110 NLAELRLDRNQLK  122 (270)
T ss_dssp             SCCEEECCSSCCC
T ss_pred             CCCEEECCCCccC
Confidence            5555555555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.48  E-value=1.5e-13  Score=115.94  Aligned_cols=88  Identities=30%  Similarity=0.336  Sum_probs=73.2

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      +..+++|||++|++.    .+++..|.++++|++|++++|.+++..|..    |.++++|++|+|++|++++..+..|.+
T Consensus        51 p~~~~~LdLs~N~i~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             CTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             CcCCCEEEeeCCCCC----CCCHHHHhCCCCCCEEECCCCcCCCcChhH----hcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            357999999999988    677788999999999999999998655555    888888888888888888655667888


Q ss_pred             CCCCCEEEccCCcccc
Q 048732          152 LSSLKHLSLGTNELNG  167 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g  167 (174)
                      +++|++|++++|++++
T Consensus       123 L~~L~~L~Ls~N~l~~  138 (635)
T 4g8a_A          123 LSSLQKLVAVETNLAS  138 (635)
T ss_dssp             CTTCCEEECTTSCCCC
T ss_pred             CCCCCEEECCCCcCCC
Confidence            8888888888888875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.47  E-value=1.1e-13  Score=113.11  Aligned_cols=104  Identities=26%  Similarity=0.426  Sum_probs=71.7

Q ss_pred             CCccccc--eEecCC--------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCC
Q 048732           59 DCCQWEG--VECNNT--------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSL  128 (174)
Q Consensus        59 ~~C~w~g--v~c~~~--------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l  128 (174)
                      ..|.|.+  +.|...        +.+++.|+|++|++.    .+.+..|..+++|++|++++|.+.+.+++..   |..+
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~---~~~l   78 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGL   78 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTTT---TTTC
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECccc---cccc
Confidence            4566555  888652        257899999999887    4456667777777777777777766664432   6677


Q ss_pred             CCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccC
Q 048732          129 KNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSI  169 (174)
Q Consensus       129 ~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~i  169 (174)
                      ++|++|++++|++++..|..|+.+++|++|++++|++++.+
T Consensus        79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  119 (455)
T 3v47_A           79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV  119 (455)
T ss_dssp             TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH
T ss_pred             ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccc
Confidence            77777777777777666667777777777777777766543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.46  E-value=2.9e-13  Score=101.45  Aligned_cols=90  Identities=26%  Similarity=0.309  Sum_probs=72.8

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|+|++|++.    .+.+..|..+++|++|++++|.++. +|...   |..+++|++|+|++|++++..|..|..+
T Consensus        56 ~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~---f~~l~~L~~L~L~~N~l~~~~~~~~~~l  127 (220)
T 2v9t_B           56 KKLRRIDLSNNQIS----ELAPDAFQGLRSLNSLVLYGNKITE-LPKSL---FEGLFSLQLLLLNANKINCLRVDAFQDL  127 (220)
T ss_dssp             TTCCEEECCSSCCC----EECTTTTTTCSSCCEEECCSSCCCC-CCTTT---TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCEEECCCCcCC----CcCHHHhhCCcCCCEEECCCCcCCc-cCHhH---ccCCCCCCEEECCCCCCCEeCHHHcCCC
Confidence            57889999998887    5567778888999999999998884 44432   7788889999999999888778888888


Q ss_pred             CCCCEEEccCCcccccCC
Q 048732          153 SSLKHLSLGTNELNGSID  170 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP  170 (174)
                      ++|++|+|++|+|++..|
T Consensus       128 ~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B          128 HNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             TTCCEEECCSSCCSCCCT
T ss_pred             CCCCEEECCCCcCCEECH
Confidence            889999999988886433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.46  E-value=2e-13  Score=108.59  Aligned_cols=104  Identities=32%  Similarity=0.389  Sum_probs=83.3

Q ss_pred             CCCccccceEecC-----------CCCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcC
Q 048732           58 SDCCQWEGVECNN-----------TTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLS  126 (174)
Q Consensus        58 ~~~C~w~gv~c~~-----------~~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~  126 (174)
                      ...|.|.++ |+.           ....+++|++++|++.    .+++..|..+++|+.|++++|.+++..|..    +.
T Consensus        27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~   97 (353)
T 2z80_A           27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEEDS----FS   97 (353)
T ss_dssp             CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTT----TT
T ss_pred             CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHhh----cC
Confidence            456888887 542           1247999999999887    566667899999999999999998766666    88


Q ss_pred             CCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732          127 SLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       127 ~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      .+++|++|++++|++++..+..++.+++|++|++++|++++ +|.
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~  141 (353)
T 2z80_A           98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGE  141 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCS
T ss_pred             CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCc
Confidence            89999999999999986555558889999999999998884 654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.46  E-value=1.9e-13  Score=114.17  Aligned_cols=99  Identities=33%  Similarity=0.449  Sum_probs=81.8

Q ss_pred             CccccceEecCC-----------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCC
Q 048732           60 CCQWEGVECNNT-----------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSL  128 (174)
Q Consensus        60 ~C~w~gv~c~~~-----------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l  128 (174)
                      .|.|.|+ |+..           ...+++|++++|++.    .+.+..|..+++|++|++++|.+++..|..    |..+
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l   73 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSSRINTIEGDA----FYSL   73 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTSCCCEECTTT----TTTC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccC----ccChhhhhcCCcccEEECCCCCcCccChhh----cccc
Confidence            5888887 7531           247999999999887    455677889999999999999998766666    8889


Q ss_pred             CCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732          129 KNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       129 ~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|++++|++++..|..|+.+++|++|++++|++++
T Consensus        74 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  112 (549)
T 2z81_A           74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT  112 (549)
T ss_dssp             TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred             ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence            999999999999987777778888899999999998875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.46  E-value=3.6e-13  Score=107.84  Aligned_cols=99  Identities=23%  Similarity=0.284  Sum_probs=58.8

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCccccc-CCCCCCEEeCcCCccccccCcchhhhcCCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFT-PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKN  130 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~  130 (174)
                      |.+..+.|...         ...++.|+|++|++.    .+++..|. .+++|+.|++++|.+++..+..    |..+++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~----~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~~   89 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLS----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEA----FVPVPN   89 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCC----EECTTSSSSCCTTCCEEECCSSCCCEECTTT----TTTCTT
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCC----ccChhhhhhcccccCEEECCCCcCCccChhh----ccCCCC
Confidence            67777888641         235778888888776    44455454 6666666666666666444433    555555


Q ss_pred             CCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732          131 LKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       131 L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      |++|+|++|++++..+..|..+++|++|+|++|+|++
T Consensus        90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~  126 (361)
T 2xot_A           90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV  126 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence            6666666555554444445555555555555555553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.44  E-value=2.8e-13  Score=97.83  Aligned_cols=90  Identities=23%  Similarity=0.282  Sum_probs=78.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|++.    .+++..|..+++|+.|++++|.+++..+..    +..+++|++|++++|++++..+..+..+
T Consensus        52 ~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l  123 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQ----SLPDGVFDKLTKLTILYLHENKLQSLPNGV----FDKLTQLKELALDTNQLKSVPDGIFDRL  123 (177)
T ss_dssp             TTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             ccccEEECCCCcce----EeChhHccCCCccCEEECCCCCccccCHHH----hhCCcccCEEECcCCcceEeCHHHhcCC
Confidence            57999999999887    566777899999999999999999665555    7899999999999999996666667899


Q ss_pred             CCCCEEEccCCcccccCC
Q 048732          153 SSLKHLSLGTNELNGSID  170 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP  170 (174)
                      ++|++|++++|++++..|
T Consensus       124 ~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          124 TSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTCCEEECCSSCBCCCHH
T ss_pred             cccCEEEecCCCeeccCc
Confidence            999999999999998654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.42  E-value=1.6e-13  Score=107.91  Aligned_cols=90  Identities=24%  Similarity=0.242  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCC
Q 048732           75 VIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS  154 (174)
Q Consensus        75 v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~  154 (174)
                      ++.|++++|++.    ...+..+..+++|+.|++++|.+++.+|.     +..+++|++|++++|++++.+|..+..+++
T Consensus       199 L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  269 (313)
T 1ogq_A          199 LAFVDLSRNMLE----GDASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF  269 (313)
T ss_dssp             CSEEECCSSEEE----ECCGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred             ccEEECcCCccc----CcCCHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence            555666665544    23456678888899999999988866654     778899999999999999999999999999


Q ss_pred             CCEEEccCCcccccCCCCC
Q 048732          155 LKHLSLGTNELNGSIDIEG  173 (174)
Q Consensus       155 L~~L~Ls~N~l~g~iP~~~  173 (174)
                      |++|++++|+++|.+|..+
T Consensus       270 L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          270 LHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             CCEEECCSSEEEEECCCST
T ss_pred             CCEEECcCCcccccCCCCc
Confidence            9999999999999999764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.42  E-value=8.1e-13  Score=97.19  Aligned_cols=87  Identities=26%  Similarity=0.324  Sum_probs=77.9

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|+|++|++.    .+++..|..+++|++|++++|.+++..|..    |..+++|++|+|++|++++..+..|..+
T Consensus        54 ~~L~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~----f~~l~~L~~L~L~~N~l~~~~~~~~~~l  125 (193)
T 2wfh_A           54 KHLTLIDLSNNRIS----TLSNQSFSNMTQLLTLILSYNRLRCIPPRT----FDGLKSLRLLSLHGNDISVVPEGAFNDL  125 (193)
T ss_dssp             TTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred             cCCCEEECCCCcCC----EeCHhHccCCCCCCEEECCCCccCEeCHHH----hCCCCCCCEEECCCCCCCeeChhhhhcC
Confidence            57999999999988    566778999999999999999999766666    9999999999999999996666679999


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|+.|++++|.+..
T Consensus       126 ~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          126 SALSHLAIGANPLYC  140 (193)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             ccccEEEeCCCCeec
Confidence            999999999999864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.41  E-value=1e-12  Score=99.00  Aligned_cols=86  Identities=26%  Similarity=0.322  Sum_probs=66.8

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|+|++|++.    .+++..|..+++|+.|++++|.+++..+..    |..+++|++|++++|+++ .+|..+..+
T Consensus        64 ~~L~~L~L~~N~l~----~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  134 (229)
T 3e6j_A           64 INLKELYLGSNQLG----ALPVGVFDSLTQLTVLDLGTNQLTVLPSAV----FDRLVHLKELFMCCNKLT-ELPRGIERL  134 (229)
T ss_dssp             TTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCC-SCCTTGGGC
T ss_pred             cCCcEEECCCCCCC----CcChhhcccCCCcCEEECCCCcCCccChhH----hCcchhhCeEeccCCccc-ccCcccccC
Confidence            46888888888776    455666788888888888888888554444    677888888888888887 777777888


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|+|++|+|++
T Consensus       135 ~~L~~L~L~~N~l~~  149 (229)
T 3e6j_A          135 THLTHLALDQNQLKS  149 (229)
T ss_dssp             TTCSEEECCSSCCCC
T ss_pred             CCCCEEECCCCcCCc
Confidence            888888888888874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.41  E-value=1.2e-12  Score=96.67  Aligned_cols=89  Identities=21%  Similarity=0.245  Sum_probs=45.2

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      +++.|++++|++.    .+++..|..+++|++|++++|.+++..+..    +..+++|++|++++|++++..+..+..++
T Consensus        77 ~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~  148 (208)
T 2o6s_A           77 SLTYLNLSTNQLQ----SLPNGVFDKLTQLKELALNTNQLQSLPDGV----FDKLTQLKDLRLYQNQLKSVPDGVFDRLT  148 (208)
T ss_dssp             TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             CcCEEECCCCcCC----ccCHhHhcCccCCCEEEcCCCcCcccCHhH----hccCCcCCEEECCCCccceeCHHHhccCC
Confidence            4455555555444    233334455555555555555555333332    45555555555555555544444455555


Q ss_pred             CCCEEEccCCcccccCC
Q 048732          154 SLKHLSLGTNELNGSID  170 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g~iP  170 (174)
                      +|++|++++|.+.+..|
T Consensus       149 ~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          149 SLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             TCCEEECCSCCBCCCTT
T ss_pred             CccEEEecCCCeecCCC
Confidence            55555555555554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.41  E-value=1.3e-12  Score=99.38  Aligned_cols=86  Identities=28%  Similarity=0.358  Sum_probs=47.9

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.|+|++|++.    .+++..|..+++|++|++++|.+++..+..    |..+++|+.|++++|++++..+..|+.++
T Consensus        84 ~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  155 (251)
T 3m19_A           84 ELGTLGLANNQLA----SLPLGVFDHLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTNQLQSIPAGAFDKLT  155 (251)
T ss_dssp             TCCEEECTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cCCEEECCCCccc----ccChhHhcccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCCcCCccCHHHcCcCc
Confidence            4555555555544    333444555556666666666555333332    45566666666666666644444566666


Q ss_pred             CCCEEEccCCcccc
Q 048732          154 SLKHLSLGTNELNG  167 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g  167 (174)
                      +|++|+|++|++++
T Consensus       156 ~L~~L~L~~N~l~~  169 (251)
T 3m19_A          156 NLQTLSLSTNQLQS  169 (251)
T ss_dssp             TCCEEECCSSCCSC
T ss_pred             CCCEEECCCCcCCc
Confidence            66666666666664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.40  E-value=5.7e-13  Score=105.48  Aligned_cols=89  Identities=17%  Similarity=0.064  Sum_probs=66.7

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.|++++|++.    .+ +..+..+++|++|++++|.+.+.+|..    ++.+++|+.|++++|.+.+.+|..++.++
T Consensus       207 ~L~~L~L~~N~l~----~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~~p~~~~~l~  277 (328)
T 4fcg_A          207 NLKSLKIRNSPLS----AL-GPAIHHLPKLEELDLRGCTALRNYPPI----FGGRAPLKRLILKDCSNLLTLPLDIHRLT  277 (328)
T ss_dssp             TCCEEEEESSCCC----CC-CGGGGGCTTCCEEECTTCTTCCBCCCC----TTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred             CCCEEEccCCCCC----cC-chhhccCCCCCEEECcCCcchhhhHHH----hcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence            4566666666554    22 234677778888888888777777776    77888888888888888888888888888


Q ss_pred             CCCEEEccCCcccccCCC
Q 048732          154 SLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g~iP~  171 (174)
                      +|++|+|++|++.|.+|.
T Consensus       278 ~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          278 QLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             TCCEEECTTCTTCCCCCG
T ss_pred             CCCEEeCCCCCchhhccH
Confidence            888888888888888875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.40  E-value=1.8e-12  Score=106.76  Aligned_cols=100  Identities=26%  Similarity=0.353  Sum_probs=75.4

Q ss_pred             ccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCE
Q 048732           63 WEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKF  133 (174)
Q Consensus        63 w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~  133 (174)
                      |..|.|...         +..++.|+|++|++.    .+.+..|..+++|++|++++|.+++..|..    |.++++|++
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~   84 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLRT   84 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCE
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhh----hhCCccCCE
Confidence            567888641         347889999999887    555677888888888888888888766666    778888888


Q ss_pred             EeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732          134 LDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       134 L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      |+|++|++++..+..|..+++|++|+|++|++++..|
T Consensus        85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~  121 (477)
T 2id5_A           85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD  121 (477)
T ss_dssp             EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred             EECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence            8888888875555567777788888888887776544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.38  E-value=2.3e-12  Score=109.00  Aligned_cols=87  Identities=28%  Similarity=0.355  Sum_probs=64.6

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|++++|++.    .+++..|.++++|++|++++|.+++..|..    |.++++|++|++++|++++..|..|+.+
T Consensus        32 ~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~----~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  103 (606)
T 3vq2_A           32 SSTKNIDLSFNPLK----ILKSYSFSNFSELQWLDLSRCEIETIEDKA----WHGLHHLSNLILTGNPIQSFSPGSFSGL  103 (606)
T ss_dssp             TTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred             CCcCEEECCCCCcC----EeChhhccCCccCcEEeCCCCcccccCHHH----hhchhhcCEeECCCCcccccChhhcCCc
Confidence            57888888888776    455666777788888888888777655655    7777777777777777776667777777


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|++++|++++
T Consensus       104 ~~L~~L~L~~n~l~~  118 (606)
T 3vq2_A          104 TSLENLVAVETKLAS  118 (606)
T ss_dssp             TTCCEEECTTSCCCC
T ss_pred             ccCCEEEccCCcccc
Confidence            777777777777764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.37  E-value=4.5e-12  Score=97.85  Aligned_cols=86  Identities=22%  Similarity=0.218  Sum_probs=41.2

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCC-CCCccccccCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNH-FNNSIFSSLGG  151 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~-l~g~~p~~l~~  151 (174)
                      ..+++|++++|++.    .+++..|..+++|++|++++|.+++..|..    +..+++|++|++++|. ++...|..+..
T Consensus        32 ~~l~~L~l~~n~i~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~l~~~~~~~~~~  103 (285)
T 1ozn_A           32 AASQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFHG  103 (285)
T ss_dssp             TTCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             CCceEEEeeCCcCC----ccCHHHcccCCCCCEEECCCCccceeCHhh----cCCccCCCEEeCCCCCCccccCHHHhcC
Confidence            35666666666555    333444555555555555555554433333    4444444444444443 33333344444


Q ss_pred             CCCCCEEEccCCccc
Q 048732          152 LSSLKHLSLGTNELN  166 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~  166 (174)
                      +++|++|++++|+++
T Consensus       104 l~~L~~L~l~~n~l~  118 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQ  118 (285)
T ss_dssp             CTTCCEEECTTSCCC
T ss_pred             CcCCCEEECCCCcCC
Confidence            444444444444444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.37  E-value=2.5e-12  Score=98.95  Aligned_cols=87  Identities=24%  Similarity=0.343  Sum_probs=44.3

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|++.    .+++..|..+++|++|++++|.+++..+..    +..+++|+.|++++|++++..+..++.+
T Consensus       109 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l  180 (272)
T 3rfs_A          109 TNLKELVLVENQLQ----SLPDGVFDKLTNLTYLNLAHNQLQSLPKGV----FDKLTNLTELDLSYNQLQSLPEGVFDKL  180 (272)
T ss_dssp             TTCCEEECTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCCEEECCCCcCC----ccCHHHhccCCCCCEEECCCCccCccCHHH----hccCccCCEEECCCCCcCccCHHHhcCC
Confidence            35666666666554    233444555555555555555555333332    4455555555555555554444444455


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|++++|++++
T Consensus       181 ~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          181 TQLKDLRLYQNQLKS  195 (272)
T ss_dssp             TTCCEEECCSSCCSC
T ss_pred             ccCCEEECCCCcCCc
Confidence            555555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.37  E-value=3.6e-12  Score=104.29  Aligned_cols=97  Identities=26%  Similarity=0.306  Sum_probs=79.0

Q ss_pred             ccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCE
Q 048732           63 WEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKF  133 (174)
Q Consensus        63 w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~  133 (174)
                      +..|.|...         ...++.|+|++|++.    .+.+..|..+++|+.|++++|.+++..+..    |.++++|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~  116 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLNT  116 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCCE
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCCE
Confidence            557888641         356889999999887    566778899999999999999998655555    888999999


Q ss_pred             EeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732          134 LDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       134 L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      |+|++|++++..+..|..+++|++|+|++|++++
T Consensus       117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  150 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES  150 (440)
T ss_dssp             EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred             EECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence            9999999986666678888999999999998874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.37  E-value=3.6e-12  Score=104.65  Aligned_cols=100  Identities=24%  Similarity=0.295  Sum_probs=84.1

Q ss_pred             ccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCE
Q 048732           63 WEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKF  133 (174)
Q Consensus        63 w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~  133 (174)
                      +..+.|...         ...++.|+|++|++.    .+.+..|..+++|+.|++++|.+++..|..    |.++++|++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~  127 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLNT  127 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCE
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCCE
Confidence            467888642         357999999999887    566788999999999999999999766666    899999999


Q ss_pred             EeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732          134 LDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       134 L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      |+|++|++++..+..|+.+++|++|+|++|++++ +|.
T Consensus       128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~  164 (452)
T 3zyi_A          128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPS  164 (452)
T ss_dssp             EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECT
T ss_pred             EECCCCcCCccChhhhcccCCCCEEECCCCCcce-eCH
Confidence            9999999997666778999999999999999884 443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=4.2e-12  Score=91.46  Aligned_cols=84  Identities=23%  Similarity=0.202  Sum_probs=72.0

Q ss_pred             EEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCC
Q 048732           76 IKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSL  155 (174)
Q Consensus        76 ~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L  155 (174)
                      +++++++|++.    .++.. +  .++|+.|++++|.+++..|..    |..+++|++|+|++|++++..|..|..+++|
T Consensus        12 ~~l~~s~n~l~----~ip~~-~--~~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L   80 (170)
T 3g39_A           12 TTVDCSGKSLA----SVPTG-I--PTTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL   80 (170)
T ss_dssp             TEEECTTSCCS----SCCSC-C--CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEEeCCCCcC----ccCcc-C--CCCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence            57999999887    44443 3  388999999999999877777    9999999999999999997777778999999


Q ss_pred             CEEEccCCcccccCC
Q 048732          156 KHLSLGTNELNGSID  170 (174)
Q Consensus       156 ~~L~Ls~N~l~g~iP  170 (174)
                      ++|+|++|+|++..|
T Consensus        81 ~~L~L~~N~l~~~~~   95 (170)
T 3g39_A           81 TQLSLNDNQLKSIPR   95 (170)
T ss_dssp             CEEECCSSCCCCCCT
T ss_pred             CEEECCCCccCEeCH
Confidence            999999999996443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.36  E-value=1.3e-12  Score=98.61  Aligned_cols=91  Identities=12%  Similarity=0.098  Sum_probs=74.7

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCc-cccccCcchhhhcCCCCCCCEEeccC-CCCCCcccccc
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNN-ITGCVQNEGLDRLSSLKNLKFLDLTL-NHFNNSIFSSL  149 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~~~~~l~~L~~L~ls~-N~l~g~~p~~l  149 (174)
                      ...++.|++++|++.    .+++..|..+++|+.|++++|. ++...+..    |..+++|++|++++ |++++..+..|
T Consensus        30 ~~~l~~L~l~~n~l~----~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           30 PPSTQTLKLIETHLR----TIPSHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             CTTCCEEEEESCCCS----EECTTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             CCcccEEEEeCCcce----EECHHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            357899999999887    5667778899999999999997 77444444    88899999999998 99986666788


Q ss_pred             CCCCCCCEEEccCCcccccCCC
Q 048732          150 GGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       150 ~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      ..+++|++|++++|++++ +|.
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~  122 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPD  122 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCC
T ss_pred             CCCCCCCEEeCCCCCCcc-ccc
Confidence            889999999999998886 665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.36  E-value=4.3e-12  Score=97.66  Aligned_cols=91  Identities=21%  Similarity=0.268  Sum_probs=71.2

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      ...++.|++++|++.    .+++..|..+++|++|++++|.+++..+..    +..+++|++|++++|++++..|..++.
T Consensus        84 l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~  155 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQ----SLPNGVFDKLTNLKELVLVENQLQSLPDGV----FDKLTNLTYLNLAHNQLQSLPKGVFDK  155 (272)
T ss_dssp             CTTCCEEECTTSCCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCEEECCCCccC----ccChhHhcCCcCCCEEECCCCcCCccCHHH----hccCCCCCEEECCCCccCccCHHHhcc
Confidence            356778888888776    455666788888888888888888655555    788888999999999888766677788


Q ss_pred             CCCCCEEEccCCcccccCC
Q 048732          152 LSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g~iP  170 (174)
                      +++|+.|++++|++++..|
T Consensus       156 l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A          156 LTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             CTTCCEEECCSSCCCCCCT
T ss_pred             CccCCEEECCCCCcCccCH
Confidence            8889999999998886443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.35  E-value=1.1e-12  Score=102.22  Aligned_cols=97  Identities=27%  Similarity=0.422  Sum_probs=63.5

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccc--cCcchhhhcCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGC--VQNEGLDRLSSLK  129 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~--~p~~~~~~~~~l~  129 (174)
                      |.|.++.|...         ...+++|++++|++.    .+++..|..+++|++|++++|.++..  +|..    +..++
T Consensus         7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~~~~   78 (306)
T 2z66_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS----DFGTT   78 (306)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH----HHSCS
T ss_pred             eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC----ccCHhHhhccccCCEEECCCCccCcccCcccc----ccccc
Confidence            88999999752         247999999999887    56666688899999999999988732  2333    33455


Q ss_pred             CCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732          130 NLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       130 ~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      +|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus        79 ~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~  114 (306)
T 2z66_A           79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK  114 (306)
T ss_dssp             CCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEE
T ss_pred             ccCEEECCCCccc-cChhhcCCCCCCCEEECCCCccc
Confidence            5555555555554 34444444444555555444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.35  E-value=2.4e-12  Score=103.03  Aligned_cols=87  Identities=24%  Similarity=0.354  Sum_probs=55.7

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|+|++|++.    .+++..|..+++|++|++++|.+++..+..    |..+++|++|+|++|++++..|..|..+
T Consensus        64 ~~L~~L~L~~N~i~----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~~l  135 (361)
T 2xot_A           64 TNLHSLLLSHNHLN----FISSEAFVPVPNLRYLDLSSNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVDRNAFEDM  135 (361)
T ss_dssp             TTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             cccCEEECCCCcCC----ccChhhccCCCCCCEEECCCCcCCcCCHHH----hCCCcCCCEEECCCCcccEECHHHhCCc
Confidence            45677777777665    445555666777777777777766444433    6666666666666666665556666666


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|+.|+|++|+|++
T Consensus       136 ~~L~~L~L~~N~l~~  150 (361)
T 2xot_A          136 AQLQKLYLSQNQISR  150 (361)
T ss_dssp             TTCCEEECCSSCCCS
T ss_pred             ccCCEEECCCCcCCe
Confidence            666666666666663

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.35  E-value=1.1e-12  Score=92.10  Aligned_cols=88  Identities=22%  Similarity=0.210  Sum_probs=75.0

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc-cccccC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS-IFSSLG  150 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~-~p~~l~  150 (174)
                      ..+++.|++++|++.    .+  ..+..+++|++|++++|.+++.+|..    +..+++|++|++++|++++. .|..++
T Consensus        41 l~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~ls~N~i~~~~~~~~~~  110 (149)
T 2je0_A           41 FEELEFLSTINVGLT----SI--ANLPKLNKLKKLELSDNRVSGGLEVL----AEKCPNLTHLNLSGNKIKDLSTIEPLK  110 (149)
T ss_dssp             CTTCCEEECTTSCCC----CC--TTCCCCTTCCEEECCSSCCCSCTHHH----HHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred             cCCCcEEECcCCCCC----Cc--hhhhcCCCCCEEECCCCcccchHHHH----hhhCCCCCEEECCCCcCCChHHHHHHh
Confidence            367999999999876    33  56888999999999999999777765    77799999999999999963 458899


Q ss_pred             CCCCCCEEEccCCcccccC
Q 048732          151 GLSSLKHLSLGTNELNGSI  169 (174)
Q Consensus       151 ~l~~L~~L~Ls~N~l~g~i  169 (174)
                      .+++|++|++++|++++..
T Consensus       111 ~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A          111 KLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             GCTTCCEEECTTCGGGGST
T ss_pred             hCCCCCEEeCcCCcccchH
Confidence            9999999999999998643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.34  E-value=2.9e-12  Score=108.09  Aligned_cols=87  Identities=22%  Similarity=0.267  Sum_probs=73.6

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|+|++|++.    .+++..|.++++|++|+|++|++++..+..    |.++++|++|++++|++++..+..|+.+
T Consensus        76 ~~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~~~~L  147 (635)
T 4g8a_A           76 PELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHL  147 (635)
T ss_dssp             TTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECGGG----GTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred             CCCCEEECCCCcCC----CcChhHhcCCCCCCEEEccCCcCCCCCHHH----hcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence            47899999999887    677788999999999999999998544444    8889999999999999987666678899


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|++++|++++
T Consensus       148 ~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A          148 KTLKELNVAHNLIQS  162 (635)
T ss_dssp             TTCCEEECCSSCCCC
T ss_pred             cccCeeccccCcccc
Confidence            999999999998874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=5.6e-12  Score=91.22  Aligned_cols=84  Identities=21%  Similarity=0.172  Sum_probs=71.5

Q ss_pred             EEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCC
Q 048732           76 IKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSL  155 (174)
Q Consensus        76 ~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L  155 (174)
                      +.+++++|++.    .++.. +  .++|+.|++++|.+.+..|..    |..+++|++|+|++|++++..+..|..+++|
T Consensus        15 ~~l~~~~n~l~----~iP~~-~--~~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L   83 (174)
T 2r9u_A           15 TLVNCQNIRLA----SVPAG-I--PTDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL   83 (174)
T ss_dssp             SEEECCSSCCS----SCCSC-C--CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cEEEeCCCCCC----ccCCC-c--CCCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence            57899999876    45443 3  388999999999999877777    9999999999999999997666678999999


Q ss_pred             CEEEccCCcccccCCC
Q 048732          156 KHLSLGTNELNGSIDI  171 (174)
Q Consensus       156 ~~L~Ls~N~l~g~iP~  171 (174)
                      ++|+|++|+|++ +|.
T Consensus        84 ~~L~L~~N~l~~-l~~   98 (174)
T 2r9u_A           84 TQLDLNDNHLKS-IPR   98 (174)
T ss_dssp             CEEECCSSCCCC-CCT
T ss_pred             hEEECCCCccce-eCH
Confidence            999999999996 554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.34  E-value=7.2e-12  Score=96.28  Aligned_cols=86  Identities=30%  Similarity=0.364  Sum_probs=46.3

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.|++++|++.    .+++..|..+++|++|++++|.+.+..+..    +..+++|++|++++|.+++..|..|..++
T Consensus        29 ~l~~L~ls~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (276)
T 2z62_A           29 STKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (276)
T ss_dssp             TCCEEECTTCCCC----EECTTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CccEEECCCCccc----ccCHhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhcCCc
Confidence            4666666666655    333444555666666666666555433333    55555555555555555544444455555


Q ss_pred             CCCEEEccCCcccc
Q 048732          154 SLKHLSLGTNELNG  167 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g  167 (174)
                      +|++|++++|++++
T Consensus       101 ~L~~L~l~~n~l~~  114 (276)
T 2z62_A          101 SLQKLVAVETNLAS  114 (276)
T ss_dssp             TCCEEECTTSCCCC
T ss_pred             cccEEECCCCCccc
Confidence            55555555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.34  E-value=2.3e-12  Score=113.44  Aligned_cols=101  Identities=24%  Similarity=0.235  Sum_probs=57.9

Q ss_pred             cccceEecCCCCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCC
Q 048732           62 QWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHF  141 (174)
Q Consensus        62 ~w~gv~c~~~~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l  141 (174)
                      .|..|.+  .+.++++|+|++|++.    .+.+..|..+++|++|++++|...+.+++..   |.++++|++|+|++|.+
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~i~----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~---f~~L~~L~~L~Ls~N~l   85 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQYTPLTIDKEA---FRNLPNLRILDLGSSKI   85 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCCCC----EECSSSCSSCCSCSEEEECTTCCCCEECTTT---TSSCTTCCEEECTTCCC
T ss_pred             CCCCCCC--CCCCcCEEECCCCcCC----ccChhHCcccccCeEEeCCCCCCccccCHHH---hcCCCCCCEEECCCCcC
Confidence            4455554  3467888888888776    3444555666666666666665444442221   55555566666665555


Q ss_pred             CCccccccCCCCCCCEEEccCCcccccCCC
Q 048732          142 NNSIFSSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       142 ~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      ++..|..|+.+++|++|+|++|.+++.+|.
T Consensus        86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~  115 (844)
T 3j0a_A           86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLK  115 (844)
T ss_dssp             CEECTTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred             cccCHhHccCCcccCEeeCcCCCCCccccc
Confidence            555555555555555555555555554443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.34  E-value=1.8e-12  Score=90.93  Aligned_cols=86  Identities=26%  Similarity=0.349  Sum_probs=75.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|++++|++..+.+   +..+..+++|+.|++++|.+++.  ..    +..+++|++|++++|.+++.+|..++.+
T Consensus        17 ~~l~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l   87 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKL---EGLTDEFEELEFLSTINVGLTSI--AN----LPKLNKLKKLELSDNRVSGGLEVLAEKC   87 (149)
T ss_dssp             GGCSEEECTTCBCBTTBC---CSCCTTCTTCCEEECTTSCCCCC--TT----CCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred             ccCeEEEccCCcCChhHH---HHHHhhcCCCcEEECcCCCCCCc--hh----hhcCCCCCEEECCCCcccchHHHHhhhC
Confidence            578999999998763332   55678999999999999999865  44    8999999999999999998899988889


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|++++|++++
T Consensus        88 ~~L~~L~ls~N~i~~  102 (149)
T 2je0_A           88 PNLTHLNLSGNKIKD  102 (149)
T ss_dssp             TTCCEEECTTSCCCS
T ss_pred             CCCCEEECCCCcCCC
Confidence            999999999999986

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.34  E-value=3.8e-12  Score=104.03  Aligned_cols=89  Identities=29%  Similarity=0.349  Sum_probs=45.7

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      +++.|++++|++.    .+.+..|..+++|++|++++|.+++..|..    +..+++|++|++++|++++..+..+..++
T Consensus       324 ~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  395 (455)
T 3v47_A          324 HLLKLNLSQNFLG----SIDSRMFENLDKLEVLDLSYNHIRALGDQS----FLGLPNLKELALDTNQLKSVPDGIFDRLT  395 (455)
T ss_dssp             TCCEEECCSSCCC----EECGGGGTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             cCCEEECCCCccC----CcChhHhcCcccCCEEECCCCcccccChhh----ccccccccEEECCCCccccCCHhHhccCC
Confidence            3444444444333    233344455555555555555555444444    55555555555555555543344455555


Q ss_pred             CCCEEEccCCcccccCC
Q 048732          154 SLKHLSLGTNELNGSID  170 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g~iP  170 (174)
                      +|+.|++++|++++.+|
T Consensus       396 ~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          396 SLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCCEEECCSSCBCCCTT
T ss_pred             cccEEEccCCCcccCCC
Confidence            56666666666555555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.33  E-value=7.2e-12  Score=97.55  Aligned_cols=89  Identities=25%  Similarity=0.303  Sum_probs=52.5

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.|++++|++.    .+++..|..+++|+.|++++|.+++..+..    |..+++|+.|++++|++++..+..|..++
T Consensus       101 ~L~~L~l~~N~l~----~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  172 (290)
T 1p9a_G          101 ALTVLDVSFNRLT----SLPLGALRGLGELQELYLKGNELKTLPPGL----LTPTPKLEKLSLANNNLTELPAGLLNGLE  172 (290)
T ss_dssp             TCCEEECCSSCCC----CCCSSTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred             CCCEEECCCCcCc----ccCHHHHcCCCCCCEEECCCCCCCccChhh----cccccCCCEEECCCCcCCccCHHHhcCcC
Confidence            4555555555554    344455666666666666666666433333    56666666666666666644444456666


Q ss_pred             CCCEEEccCCcccccCCC
Q 048732          154 SLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g~iP~  171 (174)
                      +|+.|+|++|+|+ .||.
T Consensus       173 ~L~~L~L~~N~l~-~ip~  189 (290)
T 1p9a_G          173 NLDTLLLQENSLY-TIPK  189 (290)
T ss_dssp             TCCEEECCSSCCC-CCCT
T ss_pred             CCCEEECCCCcCC-ccCh
Confidence            6777777777666 4553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=5.1e-12  Score=100.15  Aligned_cols=84  Identities=15%  Similarity=0.139  Sum_probs=72.9

Q ss_pred             EEEcCCC-CCCCCccccCcccccCCCCCCEEeCcC-CccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCC
Q 048732           77 KLDLAFR-KRDSAEWYMNASLFTPFQQLEFLDLSG-NNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS  154 (174)
Q Consensus        77 ~L~L~~n-~~~~g~~~~~~~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~  154 (174)
                      .++++++ ++.    .+ |. +..+++|+.|+|++ |.+.+..+..    |.++++|+.|+|++|+|++..|..|..+++
T Consensus        12 ~v~~~~~n~l~----~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~   81 (347)
T 2ifg_A           12 GLRCTRDGALD----SL-HH-LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTPR   81 (347)
T ss_dssp             CEECCSSCCCT----TT-TT-SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             EEEcCCCCCCC----cc-CC-CCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCCCccceeCHHHhcCCcC
Confidence            4688887 676    44 44 89999999999996 9999666566    999999999999999999988889999999


Q ss_pred             CCEEEccCCcccccCCC
Q 048732          155 LKHLSLGTNELNGSIDI  171 (174)
Q Consensus       155 L~~L~Ls~N~l~g~iP~  171 (174)
                      |+.|+|++|+|++ +|.
T Consensus        82 L~~L~l~~N~l~~-~~~   97 (347)
T 2ifg_A           82 LSRLNLSFNALES-LSW   97 (347)
T ss_dssp             CCEEECCSSCCSC-CCS
T ss_pred             CCEEeCCCCccce-eCH
Confidence            9999999999996 554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.30  E-value=8.6e-12  Score=105.44  Aligned_cols=87  Identities=24%  Similarity=0.277  Sum_probs=64.8

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|++.    .+.+..|..+++|++|++++|.+.+..|..    |.++++|++|++++|++++..|..|+.+
T Consensus        33 ~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  104 (606)
T 3t6q_A           33 NSTECLEFSFNVLP----TIQNTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDTLVLTANPLIFMAETALSGP  104 (606)
T ss_dssp             TTCCEEECTTCCCS----EECTTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred             CcCcEEEccCCccC----cCChhHhccCccceEEECCCCccceeChhh----ccCccccCeeeCCCCcccccChhhhccc
Confidence            57888999988877    455667778888888888888877666666    7777777777777777776666677777


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|++++|++++
T Consensus       105 ~~L~~L~L~~n~i~~  119 (606)
T 3t6q_A          105 KALKHLFFIQTGISS  119 (606)
T ss_dssp             TTCCEEECTTSCCSC
T ss_pred             ccccEeeccccCccc
Confidence            777777777776664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.30  E-value=6.6e-12  Score=106.40  Aligned_cols=88  Identities=26%  Similarity=0.278  Sum_probs=78.6

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcc-ccccCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI-FSSLGG  151 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~-p~~l~~  151 (174)
                      ..++.|+|++|++.    .+ |..+..+++|+.|++++|.+++ +| .    ++.+++|+.|+|++|++++.. |..++.
T Consensus       463 ~~L~~L~Ls~N~l~----~l-p~~~~~l~~L~~L~Ls~N~l~~-lp-~----l~~l~~L~~L~Ls~N~l~~~~~p~~l~~  531 (567)
T 1dce_A          463 LLVTHLDLSHNRLR----AL-PPALAALRCLEVLQASDNALEN-VD-G----VANLPRLQELLLCNNRLQQSAAIQPLVS  531 (567)
T ss_dssp             TTCCEEECCSSCCC----CC-CGGGGGCTTCCEEECCSSCCCC-CG-G----GTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred             ccCcEeecCccccc----cc-chhhhcCCCCCEEECCCCCCCC-Cc-c----cCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence            57999999999887    34 4578999999999999999996 67 5    999999999999999999877 999999


Q ss_pred             CCCCCEEEccCCcccccCCC
Q 048732          152 LSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      +++|+.|+|++|+|++.+|.
T Consensus       532 l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          532 CPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCEEEecCCcCCCCccH
Confidence            99999999999999986654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.30  E-value=2.3e-12  Score=92.11  Aligned_cols=86  Identities=27%  Similarity=0.232  Sum_probs=72.6

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcc-ccccCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI-FSSLGG  151 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~-p~~l~~  151 (174)
                      .+++.|++++|++.    .+  ..+..+++|++|++++|.+.+.+|..    +..+++|++|++++|.+++.. +..+..
T Consensus        49 ~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~l~~  118 (168)
T 2ell_A           49 VNLEFLSLINVGLI----SV--SNLPKLPKLKKLELSENRIFGGLDML----AEKLPNLTHLNLSGNKLKDISTLEPLKK  118 (168)
T ss_dssp             GGCCEEEEESSCCC----CC--SSCCCCSSCCEEEEESCCCCSCCCHH----HHHCTTCCEEECBSSSCCSSGGGGGGSS
T ss_pred             CCCCEEeCcCCCCC----Ch--hhhccCCCCCEEECcCCcCchHHHHH----HhhCCCCCEEeccCCccCcchhHHHHhc
Confidence            57899999999876    33  56888999999999999999777765    667999999999999998542 278899


Q ss_pred             CCCCCEEEccCCccccc
Q 048732          152 LSSLKHLSLGTNELNGS  168 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g~  168 (174)
                      +++|++|++++|++++.
T Consensus       119 l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A          119 LECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             CSCCCEEECCSSGGGTS
T ss_pred             CCCCCEEEeeCCcCcch
Confidence            99999999999999864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.29  E-value=1.4e-11  Score=95.13  Aligned_cols=42  Identities=26%  Similarity=0.233  Sum_probs=18.2

Q ss_pred             cCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732          125 LSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       125 ~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      +..+++|+.|++++|.+++..|..+..+++|+.|++++|+++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence            334444444444444444333444444444444444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.28  E-value=6.2e-12  Score=100.15  Aligned_cols=101  Identities=18%  Similarity=0.267  Sum_probs=86.2

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL  131 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L  131 (174)
                      |.+..|.|...         +..+++|+|++|++.    .+++..|.++++|++|++++|.+.+.+|...   |.+++++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~---f~~L~~l   81 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPKL   81 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECCTTCCEECTTS---BCSCTTC
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCCCCCCccChhH---hhcchhh
Confidence            67888999642         247899999999998    6778889999999999999999987887654   8899987


Q ss_pred             CE-EeccCCCCCCccccccCCCCCCCEEEccCCccccc
Q 048732          132 KF-LDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGS  168 (174)
Q Consensus       132 ~~-L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~  168 (174)
                      +. +.++.|+++...|..|..+++|++|++++|++++.
T Consensus        82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~  119 (350)
T 4ay9_X           82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL  119 (350)
T ss_dssp             CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred             hhhhcccCCcccccCchhhhhccccccccccccccccC
Confidence            75 56778999977788899999999999999999853

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.28  E-value=2e-11  Score=93.76  Aligned_cols=69  Identities=28%  Similarity=0.366  Sum_probs=35.6

Q ss_pred             ccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732           95 SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus        95 ~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      ..|..+++|++|++++|.+++..+..    |..+++|++|++++|.+++..+..|+.+++|+.|++++|++++
T Consensus       103 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A          103 GVFDQLVNLAELRLDRNQLKSLPPRV----FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             TTTTTCSSCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             hHcccccCCCEEECCCCccCeeCHHH----hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            33444445555555555444333332    4555555555555555554333445555666666666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.28  E-value=5.6e-12  Score=90.09  Aligned_cols=93  Identities=25%  Similarity=0.131  Sum_probs=71.5

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccC-cchhhhcCCCCCCCEEeccCCCCCCccc---c
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQ-NEGLDRLSSLKNLKFLDLTLNHFNNSIF---S  147 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~~~~~l~~L~~L~ls~N~l~g~~p---~  147 (174)
                      ..+++.|++++|++.    ...+..+..+++|+.|++++|.+++..+ ..    +..+++|++|++++|.+++..+   .
T Consensus        70 l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----l~~l~~L~~L~l~~N~l~~~~~~~~~  141 (168)
T 2ell_A           70 LPKLKKLELSENRIF----GGLDMLAEKLPNLTHLNLSGNKLKDISTLEP----LKKLECLKSLDLFNCEVTNLNDYRES  141 (168)
T ss_dssp             CSSCCEEEEESCCCC----SCCCHHHHHCTTCCEEECBSSSCCSSGGGGG----GSSCSCCCEEECCSSGGGTSTTHHHH
T ss_pred             CCCCCEEECcCCcCc----hHHHHHHhhCCCCCEEeccCCccCcchhHHH----HhcCCCCCEEEeeCCcCcchHHHHHH
Confidence            357889999999876    2235556678999999999999885321 34    8889999999999999985544   4


Q ss_pred             ccCCCCCCCEEEccCCcccccCCCCC
Q 048732          148 SLGGLSSLKHLSLGTNELNGSIDIEG  173 (174)
Q Consensus       148 ~l~~l~~L~~L~Ls~N~l~g~iP~~~  173 (174)
                      .+..+++|++|++++|.+. .+|.+.
T Consensus       142 ~~~~l~~L~~L~l~~n~~~-~~~~~~  166 (168)
T 2ell_A          142 VFKLLPQLTYLDGYDREDQ-EAPDSD  166 (168)
T ss_dssp             HHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred             HHHhCccCcEecCCCCChh-hccccc
Confidence            7888999999999999887 466543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.28  E-value=1.3e-11  Score=104.43  Aligned_cols=71  Identities=20%  Similarity=0.256  Sum_probs=37.2

Q ss_pred             cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCC-ccccccCCCCCCCEEEccCCccccc
Q 048732           94 ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSSLGGLSSLKHLSLGTNELNGS  168 (174)
Q Consensus        94 ~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g-~~p~~l~~l~~L~~L~Ls~N~l~g~  168 (174)
                      +..|..+++|++|++++|.+.+..+..    ++++++|++|++++|.+++ .+|..++++++|++|++++|++++.
T Consensus        97 p~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           97 PGSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCCSSSSC----CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             hhhcCCcccCCEEEccCCccccccccc----cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            344444444445555444444333233    5555555555555555553 3455566666666666666666553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.27  E-value=2.3e-11  Score=95.94  Aligned_cols=95  Identities=27%  Similarity=0.364  Sum_probs=69.4

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL  131 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L  131 (174)
                      |.|..+.|...         ...++.|++++|++.    .+++..|..+++|++|++++|.+++..|..    +..+++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L  104 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRKL  104 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGGG----STTCTTC
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHhH----hhCcCCC
Confidence            78999999642         247899999999887    566677888999999999999988766666    7888888


Q ss_pred             CEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732          132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      ++|++++|+++ .+|..+.  ++|++|++++|+++
T Consensus       105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~  136 (332)
T 2ft3_A          105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR  136 (332)
T ss_dssp             CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC
T ss_pred             CEEECCCCcCC-ccCcccc--ccCCEEECCCCccC
Confidence            88888888776 4554332  44445555444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.27  E-value=1.7e-11  Score=103.11  Aligned_cols=84  Identities=24%  Similarity=0.308  Sum_probs=60.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|++.    .+++..|..+++|++|++++|.+++..|..    |..+++|++|++++|+++ .+|..  .+
T Consensus        52 ~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~l  120 (562)
T 3a79_B           52 PRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQ-NISCC--PM  120 (562)
T ss_dssp             TTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred             CCcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence            56778888888776    455566777788888888888777665665    777777777777777776 56655  66


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|++++|++++
T Consensus       121 ~~L~~L~Ls~N~l~~  135 (562)
T 3a79_B          121 ASLRHLDLSFNDFDV  135 (562)
T ss_dssp             TTCSEEECCSSCCSB
T ss_pred             ccCCEEECCCCCccc
Confidence            777777777777764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.26  E-value=1.4e-11  Score=95.99  Aligned_cols=72  Identities=28%  Similarity=0.366  Sum_probs=37.8

Q ss_pred             ccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732           95 SLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus        95 ~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      ..+..+++|++|++++|.+++..|..    +..+++|+.|++++|++++..+..+..+++|++|++++|++++.+|
T Consensus       169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          169 DIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             hHHhhCcCCCEEECCCCCcCCcCHHH----hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            34455555555555555555443443    5555555555555555554444445555555555555555555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.26  E-value=2.3e-11  Score=93.47  Aligned_cols=86  Identities=21%  Similarity=0.266  Sum_probs=51.0

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc-cccccCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS-IFSSLGGL  152 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~-~p~~l~~l  152 (174)
                      +++.|++++|++.    .+.+..|..+++|++|++++|.+.+..+..    +..+++|++|++++|.+++. +|..++.+
T Consensus        77 ~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~l~~~~~~l  148 (276)
T 2z62_A           77 HLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFSNL  148 (276)
T ss_dssp             TCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred             CCCEEECCCCccC----ccChhhhcCCccccEEECCCCCccccCchh----cccCCCCCEEECcCCccceecCchhhccC
Confidence            4555555555444    333444555555556666555555433333    66667777777777777642 46667777


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|++++|++++
T Consensus       149 ~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          149 TNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TTCCEEECCSSCCCE
T ss_pred             CCCCEEECCCCCCCc
Confidence            777777777777665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.26  E-value=1.4e-12  Score=113.42  Aligned_cols=86  Identities=28%  Similarity=0.322  Sum_probs=65.3

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.|+|++|++.    .++.. +..+++|++|+|++|.++ .+|..    +..+++|++|+|++|+|+ .+|..|+.++
T Consensus       225 ~L~~L~Ls~n~l~----~l~~~-~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          225 LWHALDLSNLQIF----NISAN-IFKYDFLTRLYLNGNSLT-ELPAE----IKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             CCCEEECTTSCCS----CCCGG-GGGCCSCSCCBCTTSCCS-CCCGG----GGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             CCcEEECCCCCCC----CCChh-hcCCCCCCEEEeeCCcCc-ccChh----hhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            4556666666654    33333 447788888888888887 67766    788888888888888888 7788888888


Q ss_pred             CCCEEEccCCcccccCCC
Q 048732          154 SLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g~iP~  171 (174)
                      +|++|+|++|.|+ .||.
T Consensus       294 ~L~~L~L~~N~l~-~lp~  310 (727)
T 4b8c_D          294 QLKYFYFFDNMVT-TLPW  310 (727)
T ss_dssp             TCSEEECCSSCCC-CCCS
T ss_pred             CCCEEECCCCCCC-ccCh
Confidence            8888888888887 6775

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.26  E-value=4.7e-11  Score=92.90  Aligned_cols=90  Identities=26%  Similarity=0.217  Sum_probs=69.5

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      ...++.|++++|++.    .+ +..+..+++|+.|++++|.+++..|..    |..+++|++|++++|++++..+..|..
T Consensus        76 l~~L~~L~Ls~N~l~----~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~  146 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQ----SL-PLLGQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELKTLPPGLLTP  146 (290)
T ss_dssp             CTTCCEEECCSSCCS----SC-CCCTTTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CCcCCEEECCCCcCC----cC-chhhccCCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCCCCCccChhhccc
Confidence            346777777777665    23 345678888889999999888655555    888899999999999998666667888


Q ss_pred             CCCCCEEEccCCcccccCCC
Q 048732          152 LSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      +++|+.|+|++|+|++ +|.
T Consensus       147 l~~L~~L~L~~N~l~~-l~~  165 (290)
T 1p9a_G          147 TPKLEKLSLANNNLTE-LPA  165 (290)
T ss_dssp             CTTCCEEECTTSCCSC-CCT
T ss_pred             ccCCCEEECCCCcCCc-cCH
Confidence            8899999999999884 554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.24  E-value=3.8e-11  Score=94.46  Aligned_cols=96  Identities=23%  Similarity=0.328  Sum_probs=72.1

Q ss_pred             CccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCC
Q 048732           60 CCQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKN  130 (174)
Q Consensus        60 ~C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~  130 (174)
                      .|.+..+.|...         ...++.|++++|++.    .+++..|..+++|++|++++|.+++..|..    +..+++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~  101 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGA----FAPLVK  101 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCTT
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCC----EeChhhhccCCCCCEEECCCCcCCeeCHHH----hcCCCC
Confidence            478999999641         347899999999887    455667889999999999999998776776    888888


Q ss_pred             CCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732          131 LKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       131 L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      |++|++++|+++ .+|..+.  ++|++|++++|+++
T Consensus       102 L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~  134 (330)
T 1xku_A          102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT  134 (330)
T ss_dssp             CCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC
T ss_pred             CCEEECCCCcCC-ccChhhc--ccccEEECCCCccc
Confidence            888888888887 5554432  44555555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.24  E-value=1.6e-11  Score=88.64  Aligned_cols=87  Identities=21%  Similarity=0.180  Sum_probs=70.6

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc--ccC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS--SLG  150 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~--~l~  150 (174)
                      ..++.|++++|++.    .+  ..+..+++|++|++++|.+++ +|+..   +..+++|++|++++|+++ .+|.  .+.
T Consensus        42 ~~L~~L~Ls~N~l~----~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~---~~~l~~L~~L~L~~N~i~-~~~~~~~l~  110 (176)
T 1a9n_A           42 DQFDAIDFSDNEIR----KL--DGFPLLRRLKTLLVNNNRICR-IGEGL---DQALPDLTELILTNNSLV-ELGDLDPLA  110 (176)
T ss_dssp             TCCSEEECCSSCCC----EE--CCCCCCSSCCEEECCSSCCCE-ECSCH---HHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred             CCCCEEECCCCCCC----cc--cccccCCCCCEEECCCCcccc-cCcch---hhcCCCCCEEECCCCcCC-cchhhHhhh
Confidence            37889999999876    33  457889999999999999985 45431   578999999999999996 6776  788


Q ss_pred             CCCCCCEEEccCCcccccCCC
Q 048732          151 GLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       151 ~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      .+++|++|++++|+++ .+|.
T Consensus       111 ~l~~L~~L~l~~N~i~-~~~~  130 (176)
T 1a9n_A          111 SLKSLTYLCILRNPVT-NKKH  130 (176)
T ss_dssp             GCTTCCEEECCSSGGG-GSTT
T ss_pred             cCCCCCEEEecCCCCC-CcHh
Confidence            9999999999999987 4553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.23  E-value=3.8e-12  Score=110.66  Aligned_cols=88  Identities=24%  Similarity=0.263  Sum_probs=79.6

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|+|++|++.    .+ |..|..+++|++|+|++|.++ .+|..    ++.+++|++|+|++|.|+ .+|..|+.+
T Consensus       247 ~~L~~L~Ls~N~l~----~l-p~~~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~L~~N~l~-~lp~~~~~l  315 (727)
T 4b8c_D          247 DFLTRLYLNGNSLT----EL-PAEIKNLSNLRVLDLSHNRLT-SLPAE----LGSCFQLKYFYFFDNMVT-TLPWEFGNL  315 (727)
T ss_dssp             CSCSCCBCTTSCCS----CC-CGGGGGGTTCCEEECTTSCCS-SCCSS----GGGGTTCSEEECCSSCCC-CCCSSTTSC
T ss_pred             CCCCEEEeeCCcCc----cc-ChhhhCCCCCCEEeCcCCcCC-ccChh----hcCCCCCCEEECCCCCCC-ccChhhhcC
Confidence            57899999999887    34 456899999999999999999 78888    999999999999999998 889999999


Q ss_pred             CCCCEEEccCCcccccCCC
Q 048732          153 SSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP~  171 (174)
                      ++|++|+|++|+|+|.+|.
T Consensus       316 ~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          316 CNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             TTCCCEECTTSCCCSHHHH
T ss_pred             CCccEEeCCCCccCCCChH
Confidence            9999999999999987763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.23  E-value=3.7e-11  Score=102.03  Aligned_cols=89  Identities=19%  Similarity=0.141  Sum_probs=59.4

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.|+|++|++.    .+++..|..+++|+.|++++|.+++..|..    |+.+++|++|+|++|.+++..+..|+.++
T Consensus        76 ~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  147 (597)
T 3oja_B           76 QVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTP  147 (597)
T ss_dssp             CCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCcEEECCCCCCC----CCChHHhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence            4667777777665    344556777777777777777777655544    66777777777777777744444456777


Q ss_pred             CCCEEEccCCcccccCC
Q 048732          154 SLKHLSLGTNELNGSID  170 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g~iP  170 (174)
                      +|++|+|++|.+++..|
T Consensus       148 ~L~~L~Ls~N~l~~~~~  164 (597)
T 3oja_B          148 KLTTLSMSNNNLERIED  164 (597)
T ss_dssp             TCCEEECCSSCCCBCCT
T ss_pred             CCCEEEeeCCcCCCCCh
Confidence            77777777777776444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.23  E-value=4e-11  Score=101.33  Aligned_cols=91  Identities=23%  Similarity=0.263  Sum_probs=76.2

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|+|++|++.    .+.+..|..+++|++|++++|.+.+..|..    ++.+++|++|++++|++++..|..++.+
T Consensus        57 ~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~l~~~~~~~l  128 (606)
T 3t6q_A           57 INLTFLDLTRCQIY----WIHEDTFQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLHNQ  128 (606)
T ss_dssp             TTCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCSEECTTT----TSSCTTCCEEECTTSCCSCGGGSCCTTC
T ss_pred             ccceEEECCCCccc----eeChhhccCccccCeeeCCCCcccccChhh----hcccccccEeeccccCcccCCcchhccC
Confidence            57889999999877    566778899999999999999998777776    8889999999999999987667788888


Q ss_pred             CCCCEEEccCCcccc-cCCC
Q 048732          153 SSLKHLSLGTNELNG-SIDI  171 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g-~iP~  171 (174)
                      ++|++|++++|++++ .+|.
T Consensus       129 ~~L~~L~L~~n~l~~~~~~~  148 (606)
T 3t6q_A          129 KTLESLYLGSNHISSIKLPK  148 (606)
T ss_dssp             TTCCEEECCSSCCCCCCCCT
T ss_pred             CcccEEECCCCcccccCccc
Confidence            899999999998886 3343

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.22  E-value=2.2e-11  Score=104.28  Aligned_cols=94  Identities=22%  Similarity=0.184  Sum_probs=51.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcch--------------------hhhcCCCCCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEG--------------------LDRLSSLKNLK  132 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~--------------------~~~~~~l~~L~  132 (174)
                      .+++.|+|++|++.    .+++..|..+++|++|++++|.+++..|...                    ...|+.+++|+
T Consensus        25 ~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  100 (680)
T 1ziw_A           25 TNITVLNLTHNQLR----RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT  100 (680)
T ss_dssp             TTCSEEECCSSCCC----CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred             CCCcEEECCCCCCC----CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence            45666666666655    2333344444444444444444443333320                    00155666666


Q ss_pred             EEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732          133 FLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       133 ~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      +|++++|++++..|..|+.+++|++|++++|++++..|
T Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  138 (680)
T 1ziw_A          101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL  138 (680)
T ss_dssp             EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred             EEECCCCccCccChhHccccCCCCEEECCCCcccccCc
Confidence            66666666665555566666666666666666665444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.22  E-value=1.6e-11  Score=103.97  Aligned_cols=85  Identities=26%  Similarity=0.328  Sum_probs=75.9

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.|+|++|++.    .+ |. +..+++|+.|++++|.++ .+|..    ++.+++|+.|+|++|++++ +| .++.++
T Consensus       442 ~L~~L~Ls~n~l~----~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~  508 (567)
T 1dce_A          442 DVRVLHLAHKDLT----VL-CH-LEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALEN-VD-GVANLP  508 (567)
T ss_dssp             TCSEEECTTSCCS----SC-CC-GGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCCC-CG-GGTTCS
T ss_pred             CceEEEecCCCCC----CC-cC-ccccccCcEeecCccccc-ccchh----hhcCCCCCEEECCCCCCCC-Cc-ccCCCC
Confidence            4788999999887    34 34 899999999999999999 78887    9999999999999999996 77 899999


Q ss_pred             CCCEEEccCCcccccC-CC
Q 048732          154 SLKHLSLGTNELNGSI-DI  171 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g~i-P~  171 (174)
                      +|+.|+|++|+|++.+ |.
T Consensus       509 ~L~~L~Ls~N~l~~~~~p~  527 (567)
T 1dce_A          509 RLQELLLCNNRLQQSAAIQ  527 (567)
T ss_dssp             SCCEEECCSSCCCSSSTTG
T ss_pred             CCcEEECCCCCCCCCCCcH
Confidence            9999999999999865 53

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.22  E-value=5.1e-11  Score=95.81  Aligned_cols=86  Identities=19%  Similarity=0.145  Sum_probs=48.7

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      +++.|++++|++.    .+++..|..+++|++|++++|.+++..|..    ++.+++|++|++++|+++...+..|+.++
T Consensus        70 ~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  141 (390)
T 3o6n_A           70 QVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTP  141 (390)
T ss_dssp             CCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cCcEEECCCCccc----ccChhhccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhcCCC
Confidence            4556666665554    344445666666666666666666544444    55666666666666666532223345566


Q ss_pred             CCCEEEccCCcccc
Q 048732          154 SLKHLSLGTNELNG  167 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g  167 (174)
                      +|++|++++|++++
T Consensus       142 ~L~~L~L~~n~l~~  155 (390)
T 3o6n_A          142 KLTTLSMSNNNLER  155 (390)
T ss_dssp             TCCEEECCSSCCCB
T ss_pred             CCcEEECCCCccCc
Confidence            66666666666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.22  E-value=2e-11  Score=101.96  Aligned_cols=91  Identities=25%  Similarity=0.358  Sum_probs=67.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCC-ccccccCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN-SIFSSLGG  151 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g-~~p~~l~~  151 (174)
                      .+++.|++++|++.    .+++..|..+++|++|++++|.+++..|..    ++.+++|++|++++|++++ .+|..++.
T Consensus        50 ~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  121 (549)
T 2z81_A           50 ANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSW----FGPLSSLKYLNLMGNPYQTLGVTSLFPN  121 (549)
T ss_dssp             TTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCSCCHHH----HTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred             CcccEEECCCCCcC----ccChhhccccccCCEEECCCCccCccCHHH----hccCCCCcEEECCCCcccccchhhhhhc
Confidence            56888888888776    455667788888888888888887655544    7788888888888888875 35667777


Q ss_pred             CCCCCEEEccCCcccccCCC
Q 048732          152 LSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      +++|++|++++|++.+.+|.
T Consensus       122 l~~L~~L~L~~n~~~~~~~~  141 (549)
T 2z81_A          122 LTNLQTLRIGNVETFSEIRR  141 (549)
T ss_dssp             CTTCCEEEEEESSSCCEECT
T ss_pred             cCCccEEECCCCccccccCH
Confidence            77788888877775555654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.21  E-value=1.6e-11  Score=102.12  Aligned_cols=84  Identities=23%  Similarity=0.240  Sum_probs=45.6

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|++++|++.    .+++..|..+++|++|++++|.+++..|..    |..+++|++|++++|+++ .+|..  .+
T Consensus        21 ~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~l   89 (520)
T 2z7x_B           21 QKTTILNISQNYIS----ELWTSDILSLSKLRILIISHNRIQYLDISV----FKFNQELEYLDLSHNKLV-KISCH--PT   89 (520)
T ss_dssp             TTCSEEECCSSCCC----CCCHHHHTTCTTCCEEECCSSCCCEEEGGG----GTTCTTCCEEECCSSCCC-EEECC--CC
T ss_pred             ccccEEECCCCccc----ccChhhccccccccEEecCCCccCCcChHH----hhcccCCCEEecCCCcee-ecCcc--cc
Confidence            35556666666554    233444555556666666666555444444    555555555555555555 44443  45


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|++++|++++
T Consensus        90 ~~L~~L~L~~N~l~~  104 (520)
T 2z7x_B           90 VNLKHLDLSFNAFDA  104 (520)
T ss_dssp             CCCSEEECCSSCCSS
T ss_pred             CCccEEeccCCcccc
Confidence            555555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.21  E-value=4.5e-11  Score=98.41  Aligned_cols=87  Identities=23%  Similarity=0.232  Sum_probs=47.1

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|+|++|++.    .+.+..|..+++|++|++++|.+++..+..    |.++++|++|++++|++++..|..|..+
T Consensus        56 ~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  127 (477)
T 2id5_A           56 PHLEELELNENIVS----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQDL  127 (477)
T ss_dssp             TTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCCCEEECCCCccC----EeChhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHcccc
Confidence            35666666666554    333445555666666666666555322222    4555555555555555555445555555


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|++++|++++
T Consensus       128 ~~L~~L~l~~n~l~~  142 (477)
T 2id5_A          128 YNLKSLEVGDNDLVY  142 (477)
T ss_dssp             TTCCEEEECCTTCCE
T ss_pred             ccCCEEECCCCccce
Confidence            555555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.21  E-value=3e-11  Score=101.15  Aligned_cols=91  Identities=24%  Similarity=0.278  Sum_probs=53.6

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.|++++|++..+.   .+..+..+++|+.|++++|.+++..|..    +..+++|++|++++|++++..|..+..++
T Consensus       446 ~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  518 (570)
T 2z63_A          446 SLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMASNQLKSVPDGIFDRLT  518 (570)
T ss_dssp             TCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             cCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccccCChhh----hhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence            3445555554432111   1344556666666666666666555554    66666666666666666665555666666


Q ss_pred             CCCEEEccCCcccccCCC
Q 048732          154 SLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g~iP~  171 (174)
                      +|+.|++++|++++.+|.
T Consensus       519 ~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          519 SLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCCEEECCSSCBCCCTTT
T ss_pred             CCcEEEecCCcccCCCcc
Confidence            666666666666666553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.20  E-value=2.6e-11  Score=88.98  Aligned_cols=86  Identities=17%  Similarity=0.272  Sum_probs=46.9

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|++.    ...+..+..+++|++|++++|.+++..|..    +..+++|++|++++|++.+.+| .+..+
T Consensus        88 ~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~L~~n~~i~~~~-~l~~l  158 (197)
T 4ezg_A           88 SNLERLRIMGKDVT----SDKIPNLSGLTSLTLLDISHSAHDDSILTK----INTLPKVNSIDLSYNGAITDIM-PLKTL  158 (197)
T ss_dssp             TTCCEEEEECTTCB----GGGSCCCTTCTTCCEEECCSSBCBGGGHHH----HTTCSSCCEEECCSCTBCCCCG-GGGGC
T ss_pred             CCCCEEEeECCccC----cccChhhcCCCCCCEEEecCCccCcHhHHH----HhhCCCCCEEEccCCCCccccH-hhcCC
Confidence            34555555555443    112334555666666666666665544444    5566666666666665222444 45566


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|+.|++++|++++
T Consensus       159 ~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          159 PELKSLNIQFDGVHD  173 (197)
T ss_dssp             SSCCEEECTTBCCCC
T ss_pred             CCCCEEECCCCCCcC
Confidence            666666666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.20  E-value=5e-11  Score=93.79  Aligned_cols=88  Identities=22%  Similarity=0.244  Sum_probs=72.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|++.    .+.+..+..+++|+.|++++|.+++..+..    +..+++|+.|++++|+++ .+|..+..+
T Consensus       192 ~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          192 PSLTELHLDGNKIT----KVDAASLKGLNNLAKLGLSFNSISAVDNGS----LANTPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             TTCSEEECTTSCCC----EECTGGGTTCTTCCEEECCSSCCCEECTTT----GGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             ccCCEEECCCCcCC----ccCHHHhcCCCCCCEEECCCCcCceeChhh----ccCCCCCCEEECCCCcCc-cCChhhccC
Confidence            46777888887766    445667888999999999999998766655    888899999999999998 788888899


Q ss_pred             CCCCEEEccCCcccccCC
Q 048732          153 SSLKHLSLGTNELNGSID  170 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP  170 (174)
                      ++|++|++++|+|++ +|
T Consensus       263 ~~L~~L~l~~N~i~~-~~  279 (330)
T 1xku_A          263 KYIQVVYLHNNNISA-IG  279 (330)
T ss_dssp             SSCCEEECCSSCCCC-CC
T ss_pred             CCcCEEECCCCcCCc-cC
Confidence            999999999999885 44

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.19  E-value=5.1e-11  Score=101.97  Aligned_cols=88  Identities=20%  Similarity=0.234  Sum_probs=70.9

Q ss_pred             cEEEEEcCCCCCCCCccccCccccc--CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEec------cCCCCCCcc
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFT--PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDL------TLNHFNNSI  145 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~--~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~l------s~N~l~g~~  145 (174)
                      .++.|+|++|++.    .++ ..+.  .+++|+.|++++|.+++ +|..    +..+++|+.|++      ++|++.+.+
T Consensus       489 ~L~~L~Ls~N~l~----~lp-~~~~~~~l~~L~~L~Ls~N~l~~-ip~~----~~~l~~L~~L~Ls~N~~ls~N~l~~~~  558 (636)
T 4eco_A          489 LLTSIDLRFNKLT----KLS-DDFRATTLPYLVGIDLSYNSFSK-FPTQ----PLNSSTLKGFGIRNQRDAQGNRTLREW  558 (636)
T ss_dssp             GCCEEECCSSCCC----BCC-GGGSTTTCTTCCEEECCSSCCSS-CCCG----GGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred             CccEEECcCCcCC----ccC-hhhhhccCCCcCEEECCCCCCCC-cChh----hhcCCCCCEEECCCCcccccCcccccC
Confidence            6778888888776    343 3344  88899999999999887 7877    778899999988      567788888


Q ss_pred             ccccCCCCCCCEEEccCCcccccCCCC
Q 048732          146 FSSLGGLSSLKHLSLGTNELNGSIDIE  172 (174)
Q Consensus       146 p~~l~~l~~L~~L~Ls~N~l~g~iP~~  172 (174)
                      |..++.+++|+.|+|++|++ +.||..
T Consensus       559 p~~l~~l~~L~~L~Ls~N~l-~~ip~~  584 (636)
T 4eco_A          559 PEGITLCPSLTQLQIGSNDI-RKVNEK  584 (636)
T ss_dssp             CTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             hHHHhcCCCCCEEECCCCcC-CccCHh
Confidence            98898899999999999999 678864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.18  E-value=4.2e-11  Score=87.84  Aligned_cols=88  Identities=20%  Similarity=0.288  Sum_probs=72.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|++++|.+.    .  ...+..+++|++|++++|.+++..|..    +..+++|++|++++|++++..|..++.+
T Consensus        66 ~~L~~L~l~~n~~~----~--~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~i~~~~~~~l~~l  135 (197)
T 4ezg_A           66 HNIKDLTINNIHAT----N--YNPISGLSNLERLRIMGKDVTSDKIPN----LSGLTSLTLLDISHSAHDDSILTKINTL  135 (197)
T ss_dssp             TTCSEEEEESCCCS----C--CGGGTTCTTCCEEEEECTTCBGGGSCC----CTTCTTCCEEECCSSBCBGGGHHHHTTC
T ss_pred             CCCCEEEccCCCCC----c--chhhhcCCCCCEEEeECCccCcccChh----hcCCCCCCEEEecCCccCcHhHHHHhhC
Confidence            47889999988554    1  235788999999999999998777776    8899999999999999998888889999


Q ss_pred             CCCCEEEccCCcccccCC
Q 048732          153 SSLKHLSLGTNELNGSID  170 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP  170 (174)
                      ++|++|++++|++.+.+|
T Consensus       136 ~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A          136 PKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             SSCCEEECCSCTBCCCCG
T ss_pred             CCCCEEEccCCCCccccH
Confidence            999999999998333455

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.18  E-value=7.2e-11  Score=100.24  Aligned_cols=87  Identities=21%  Similarity=0.311  Sum_probs=77.0

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|+|++|++.    .+++..|..+++|++|++++|.+++..+..    |+.+++|++|++++|.+++..|..|+.+
T Consensus        99 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  170 (597)
T 3oja_B           99 HTIQKLYMGFNAIR----YLPPHVFQNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQAT  170 (597)
T ss_dssp             TTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred             CCCCEEECCCCcCC----CCCHHHHcCCCCCCEEEeeCCCCCCCCHHH----hccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence            47999999999887    566778899999999999999999544443    7899999999999999998888899999


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|++++|.+++
T Consensus       171 ~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          171 TSLQNLQLSSNRLTH  185 (597)
T ss_dssp             TTCCEEECTTSCCSB
T ss_pred             CcCcEEECcCCCCCC
Confidence            999999999999986

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.18  E-value=4.7e-11  Score=99.26  Aligned_cols=92  Identities=20%  Similarity=0.148  Sum_probs=66.4

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCcccc--ccCcchhhhcCCCCCCCEEeccCCCCCCccccc-
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITG--CVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS-  148 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g--~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~-  148 (174)
                      ...++.|++++|++.    ...+..+..+++|+.|++++|.+++  .+|..    +..+++|++|++++|.+++.+|.. 
T Consensus       323 l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~l~~~~  394 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLT----DTVFENCGHLTELETLILQMNQLKELSKIAEM----TTQMKSLQQLDISQNSVSYDEKKGD  394 (520)
T ss_dssp             CCCCCEEECCSSCCC----TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH----HTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred             CCcccEEEeECCccC----hhhhhhhccCCCCCEEEccCCccCccccchHH----HhhCCCCCEEECCCCcCCcccccch
Confidence            356788888888776    2225567778888888888888875  44444    777888888888888888656653 


Q ss_pred             cCCCCCCCEEEccCCcccccCCC
Q 048732          149 LGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       149 l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      +..+++|++|++++|++++.+|.
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~~~~~  417 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTDTIFR  417 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGG
T ss_pred             hccCccCCEEECcCCCCCcchhh
Confidence            67777777777777777766654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.18  E-value=7.1e-11  Score=98.85  Aligned_cols=86  Identities=22%  Similarity=0.276  Sum_probs=42.2

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.|++++|++.    .+++..|..+++|++|++++|.+++..|..    |..+++|++|++++|++++..+..++.++
T Consensus        53 ~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  124 (570)
T 2z63_A           53 ELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHLK  124 (570)
T ss_dssp             SCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred             CceEEECCCCcCC----ccCcccccCchhCCEEeCcCCcCCccCHhh----hcCccccccccccccccccCCCccccccc
Confidence            3444444444333    233344445555555555555554333333    55555555555555555533333455555


Q ss_pred             CCCEEEccCCcccc
Q 048732          154 SLKHLSLGTNELNG  167 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g  167 (174)
                      +|++|++++|.+++
T Consensus       125 ~L~~L~L~~n~l~~  138 (570)
T 2z63_A          125 TLKELNVAHNLIQS  138 (570)
T ss_dssp             TCCEEECCSSCCCC
T ss_pred             cccEEecCCCccce
Confidence            66666666665554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.18  E-value=9.7e-11  Score=94.14  Aligned_cols=88  Identities=20%  Similarity=0.312  Sum_probs=75.7

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      ..+++.|++++|++.    .+++..|..+++|++|++++|.++ .+|...   +..+++|++|++++|.+++..|..++.
T Consensus        92 l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~  163 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIR----YLPPHVFQNVPLLTVLVLERNDLS-SLPRGI---FHNTPKLTTLSMSNNNLERIEDDTFQA  163 (390)
T ss_dssp             CTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCC-CCCTTT---TTTCTTCCEEECCSSCCCBCCTTTTSS
T ss_pred             CCCcCEEECCCCCCC----cCCHHHhcCCCCCCEEECCCCccC-cCCHHH---hcCCCCCcEEECCCCccCccChhhccC
Confidence            357899999999887    456777899999999999999998 455542   688999999999999999877888999


Q ss_pred             CCCCCEEEccCCcccc
Q 048732          152 LSSLKHLSLGTNELNG  167 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g  167 (174)
                      +++|++|++++|++++
T Consensus       164 l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          164 TTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CTTCCEEECCSSCCSB
T ss_pred             CCCCCEEECCCCcCCc
Confidence            9999999999999885

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.17  E-value=7.8e-11  Score=100.90  Aligned_cols=90  Identities=23%  Similarity=0.261  Sum_probs=72.3

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|+|++|++.    .+++..|..+++|++|++++|.+.+..|..    |+.+++|++|++++|.+++..|..++.+
T Consensus        73 ~~L~~L~L~~n~l~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  144 (680)
T 1ziw_A           73 PMLKVLNLQHNELS----QLSDKTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQL  144 (680)
T ss_dssp             TTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCSCT----TTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred             cCcCEEECCCCccC----ccChhhhccCCCCCEEECCCCccCccChhH----ccccCCCCEEECCCCcccccCchhhccc
Confidence            45778888887776    455667888899999999999887655555    8889999999999999988888888888


Q ss_pred             CCCCEEEccCCcccccCC
Q 048732          153 SSLKHLSLGTNELNGSID  170 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP  170 (174)
                      ++|++|++++|++++..|
T Consensus       145 ~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A          145 ENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             TTCCEEECCSSCCCCBCH
T ss_pred             ccCCEEEccCCcccccCH
Confidence            889999998888876443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.17  E-value=9.8e-12  Score=97.44  Aligned_cols=85  Identities=20%  Similarity=0.176  Sum_probs=44.0

Q ss_pred             cEEEEEcCCCCCCCCccccCcccc--cCCCCCCEEeCcCCccccccCcchhhhcCCC-----CCCCEEeccCCCCCCccc
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLF--TPFQQLEFLDLSGNNITGCVQNEGLDRLSSL-----KNLKFLDLTLNHFNNSIF  146 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~--~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l-----~~L~~L~ls~N~l~g~~p  146 (174)
                      +++.|++++|++. +.  + +..+  ..+++|++|++++|.+++. |..    +..+     ++|++|++++|++++..|
T Consensus        96 ~L~~L~L~~n~l~-~~--~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~----~~~l~~~~~~~L~~L~L~~N~l~~~~~  166 (312)
T 1wwl_A           96 GLQELTLENLEVT-GT--A-PPPLLEATGPDLNILNLRNVSWATR-DAW----LAELQQWLKPGLKVLSIAQAHSLNFSC  166 (312)
T ss_dssp             CCCEEEEEEEBCB-SC--C-CCCSSSCCSCCCSEEEEESCBCSSS-SSH----HHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred             CccEEEccCCccc-ch--h-HHHHHHhcCCCccEEEccCCCCcch-hHH----HHHHHHhhcCCCcEEEeeCCCCccchH
Confidence            4556666665544 11  1 2222  5556666666666666544 433    3332     555555555555555444


Q ss_pred             cccCCCCCCCEEEccCCcccc
Q 048732          147 SSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       147 ~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      ..|+.+++|++|++++|++.|
T Consensus       167 ~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          167 EQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             TTCCCCSSCCEEECCSCTTCH
T ss_pred             HHhccCCCCCEEECCCCCcCc
Confidence            555555555555555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.16  E-value=5.7e-11  Score=85.62  Aligned_cols=87  Identities=24%  Similarity=0.179  Sum_probs=70.4

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCC-CCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQ-QLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG  150 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~  150 (174)
                      ...++.|++++|++.    .+ +. +..+. +|+.|++++|.+++.  ..    +..+++|++|++++|++++..|..+.
T Consensus        18 ~~~L~~L~l~~n~l~----~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~----l~~l~~L~~L~Ls~N~l~~~~~~~~~   85 (176)
T 1a9n_A           18 AVRDRELDLRGYKIP----VI-EN-LGATLDQFDAIDFSDNEIRKL--DG----FPLLRRLKTLLVNNNRICRIGEGLDQ   85 (176)
T ss_dssp             TTSCEEEECTTSCCC----SC-CC-GGGGTTCCSEEECCSSCCCEE--CC----CCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             cCCceEEEeeCCCCc----hh-HH-hhhcCCCCCEEECCCCCCCcc--cc----cccCCCCCEEECCCCcccccCcchhh
Confidence            357899999999887    33 33 44444 999999999999964  34    89999999999999999954445558


Q ss_pred             CCCCCCEEEccCCcccccCCC
Q 048732          151 GLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       151 ~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      .+++|++|++++|+|+ .+|.
T Consensus        86 ~l~~L~~L~L~~N~i~-~~~~  105 (176)
T 1a9n_A           86 ALPDLTELILTNNSLV-ELGD  105 (176)
T ss_dssp             HCTTCCEEECCSCCCC-CGGG
T ss_pred             cCCCCCEEECCCCcCC-cchh
Confidence            9999999999999996 4553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.16  E-value=9.7e-11  Score=95.78  Aligned_cols=85  Identities=25%  Similarity=0.305  Sum_probs=67.0

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|++.    .++  .+..+++|+.|++++|.+++..|..    |..+++|+.|++++|++++..|..|..+
T Consensus       185 ~~L~~L~L~~n~l~----~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l  254 (440)
T 3zyj_A          185 SNLRYLNLAMCNLR----EIP--NLTPLIKLDELDLSGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIERNAFDNL  254 (440)
T ss_dssp             SSCCEEECTTSCCS----SCC--CCTTCSSCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred             cccCeecCCCCcCc----ccc--ccCCCcccCEEECCCCccCccChhh----hccCccCCEEECCCCceeEEChhhhcCC
Confidence            46888899988776    332  3677888888888888888666666    7888888888888888887777788888


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|+.|+|++|++++
T Consensus       255 ~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          255 QSLVEINLAHNNLTL  269 (440)
T ss_dssp             TTCCEEECTTSCCCC
T ss_pred             CCCCEEECCCCCCCc
Confidence            888888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.15  E-value=4.4e-11  Score=94.27  Aligned_cols=86  Identities=24%  Similarity=0.248  Sum_probs=71.7

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|++.    .+.+..+..+++|+.|++++|.+.+..+..    +..+++|+.|++++|+++ .+|..+..+
T Consensus       193 ~~L~~L~l~~n~i~----~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l  263 (332)
T 2ft3_A          193 ETLNELHLDHNKIQ----AIELEDLLRYSKLYRLGLGHNQIRMIENGS----LSFLPTLRELHLDNNKLS-RVPAGLPDL  263 (332)
T ss_dssp             SSCSCCBCCSSCCC----CCCTTSSTTCTTCSCCBCCSSCCCCCCTTG----GGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred             CCCCEEECCCCcCC----ccCHHHhcCCCCCCEEECCCCcCCcCChhH----hhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence            36777788888776    444567888999999999999998766655    888999999999999998 888888999


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|++++|++++
T Consensus       264 ~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          264 KLLQVVYLHTNNITK  278 (332)
T ss_dssp             TTCCEEECCSSCCCB
T ss_pred             ccCCEEECCCCCCCc
Confidence            999999999999885

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.14  E-value=1.3e-10  Score=95.41  Aligned_cols=82  Identities=22%  Similarity=0.201  Sum_probs=56.0

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|+|++|++.    .+.+..|..+++|++|++++|.+++..+..    |..+++|++|++++|+++...+..|..+
T Consensus        99 ~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l  170 (452)
T 3zyi_A           99 HHLEVLQLGRNSIR----QIEVGAFNGLASLNTLELFDNWLTVIPSGA----FEYLSKLRELWLRNNPIESIPSYAFNRV  170 (452)
T ss_dssp             TTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCSBCCTTT----SSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred             CCCCEEECCCCccC----CcChhhccCcccCCEEECCCCcCCccChhh----hcccCCCCEEECCCCCcceeCHhHHhcC
Confidence            56888888888776    455667778888888888888887544444    7777778888888777774444345555


Q ss_pred             CCCCEEEccC
Q 048732          153 SSLKHLSLGT  162 (174)
Q Consensus       153 ~~L~~L~Ls~  162 (174)
                      ++|+.|++++
T Consensus       171 ~~L~~L~l~~  180 (452)
T 3zyi_A          171 PSLMRLDLGE  180 (452)
T ss_dssp             TTCCEEECCC
T ss_pred             CcccEEeCCC
Confidence            5555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.14  E-value=4e-11  Score=93.94  Aligned_cols=40  Identities=25%  Similarity=0.191  Sum_probs=26.4

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccc
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGC  116 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~  116 (174)
                      ..++.|++++|++.    .+++..|..+++|++|++++|.+.+.
T Consensus       149 ~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          149 PGLKVLSIAQAHSL----NFSCEQVRVFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             TTCCEEEEESCSCC----CCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred             CCCcEEEeeCCCCc----cchHHHhccCCCCCEEECCCCCcCcc
Confidence            45677777777665    34455667777777777777776544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.13  E-value=1.2e-10  Score=97.90  Aligned_cols=91  Identities=21%  Similarity=0.218  Sum_probs=53.9

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCcccc--ccCcchhhhcCCCCCCCEEeccCCCCCCcccc-c
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITG--CVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS-S  148 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g--~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~-~  148 (174)
                      ...++.|++++|++.    ...+..+..+++|+.|++++|.+++  .+|..    +..+++|++|++++|++++.+|. .
T Consensus       352 l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~  423 (562)
T 3a79_B          352 PSSFTFLNFTQNVFT----DSVFQGCSTLKRLQTLILQRNGLKNFFKVALM----TKNMSSLETLDVSLNSLNSHAYDRT  423 (562)
T ss_dssp             CCCCCEEECCSSCCC----TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT----TTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred             CCCceEEECCCCccc----cchhhhhcccCCCCEEECCCCCcCCcccchhh----hcCCCCCCEEECCCCcCCCccChhh
Confidence            356677777777665    2224456666667777777766664  22233    56666666666666666654444 3


Q ss_pred             cCCCCCCCEEEccCCcccccCC
Q 048732          149 LGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       149 l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      +..+++|++|++++|++++.+|
T Consensus       424 ~~~l~~L~~L~l~~n~l~~~~~  445 (562)
T 3a79_B          424 CAWAESILVLNLSSNMLTGSVF  445 (562)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGG
T ss_pred             hcCcccCCEEECCCCCCCcchh
Confidence            5555666666666666655544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.13  E-value=1.1e-10  Score=97.01  Aligned_cols=43  Identities=26%  Similarity=0.294  Sum_probs=28.9

Q ss_pred             CCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732          127 SLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       127 ~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      .+++|+.|+|++|.+++ +|..+..+++|+.|+|++|+|++ +|.
T Consensus       189 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~  231 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK  231 (487)
T ss_dssp             CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred             cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cch
Confidence            46677777777777774 44446677777777777777775 553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.13  E-value=1.3e-10  Score=102.34  Aligned_cols=87  Identities=20%  Similarity=0.300  Sum_probs=43.7

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccc--cCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS--LGG  151 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~--l~~  151 (174)
                      +++.|+|++|+.. +  .+++..|.++++|++|++++|.+.+..|..    |.++++|++|+|++|.+++.+|..  ++.
T Consensus        49 ~L~~LdLs~n~~~-~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           49 QLQLLELGSQYTP-L--TIDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             SCSEEEECTTCCC-C--EECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred             cCeEEeCCCCCCc-c--ccCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEeeCcCCCCCcccccCccccc
Confidence            4555555555322 1  233444555555555555555555444444    555555555555555555444432  455


Q ss_pred             CCCCCEEEccCCcccc
Q 048732          152 LSSLKHLSLGTNELNG  167 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g  167 (174)
                      +++|++|+|++|++++
T Consensus       122 L~~L~~L~Ls~N~l~~  137 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRS  137 (844)
T ss_dssp             CSSCCEEEEESCCCCC
T ss_pred             cCCCCEEECCCCcccc
Confidence            5555555555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.12  E-value=1.4e-10  Score=102.68  Aligned_cols=88  Identities=20%  Similarity=0.289  Sum_probs=69.9

Q ss_pred             cEEEEEcCCCCCCCCccccCccccc--CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccC------CCCCCcc
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFT--PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTL------NHFNNSI  145 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~--~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~------N~l~g~~  145 (174)
                      .++.|+|++|++.    .++ ..+.  .+++|+.|++++|.+++ +|..    +..+++|+.|+|++      |++.+.+
T Consensus       729 ~L~~L~Ls~N~L~----~lp-~~l~~~~l~~L~~L~Ls~N~L~~-lp~~----l~~L~~L~~L~Ls~N~~ls~N~l~~~i  798 (876)
T 4ecn_A          729 LLTTIDLRFNKLT----SLS-DDFRATTLPYLSNMDVSYNCFSS-FPTQ----PLNSSQLKAFGIRHQRDAEGNRILRQW  798 (876)
T ss_dssp             GCCEEECCSSCCC----CCC-GGGSTTTCTTCCEEECCSSCCSS-CCCG----GGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred             CccEEECCCCCCc----cch-HHhhhccCCCcCEEEeCCCCCCc-cchh----hhcCCCCCEEECCCCCCcccccccccC
Confidence            6777888877766    333 3444  78888888888888886 7776    77888899998866      7788888


Q ss_pred             ccccCCCCCCCEEEccCCcccccCCCC
Q 048732          146 FSSLGGLSSLKHLSLGTNELNGSIDIE  172 (174)
Q Consensus       146 p~~l~~l~~L~~L~Ls~N~l~g~iP~~  172 (174)
                      |..++.+++|+.|+|++|+| +.||..
T Consensus       799 p~~l~~L~~L~~L~Ls~N~L-~~Ip~~  824 (876)
T 4ecn_A          799 PTGITTCPSLIQLQIGSNDI-RKVDEK  824 (876)
T ss_dssp             CTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             hHHHhcCCCCCEEECCCCCC-CccCHh
Confidence            88888889999999999988 688864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.11  E-value=1.7e-10  Score=91.68  Aligned_cols=83  Identities=24%  Similarity=0.343  Sum_probs=58.4

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc--ccC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS--SLG  150 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~--~l~  150 (174)
                      .+++.|++++|++.    .+.+..|..+++|++|++++|.+++ +|...   +..+++|++|++++|+++ .+|.  .+.
T Consensus        76 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~---~~~l~~L~~L~L~~n~l~-~l~~~~~~~  146 (353)
T 2z80_A           76 VNLQALVLTSNGIN----TIEEDSFSSLGSLEHLDLSYNYLSN-LSSSW---FKPLSSLTFLNLLGNPYK-TLGETSLFS  146 (353)
T ss_dssp             TTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCSS-CCHHH---HTTCTTCSEEECTTCCCS-SSCSSCSCT
T ss_pred             CCCCEEECCCCccC----ccCHhhcCCCCCCCEEECCCCcCCc-CCHhH---hCCCccCCEEECCCCCCc-ccCchhhhc
Confidence            56788888888776    4556667778888888888888774 44322   667777777777777777 3443  567


Q ss_pred             CCCCCCEEEccCCc
Q 048732          151 GLSSLKHLSLGTNE  164 (174)
Q Consensus       151 ~l~~L~~L~Ls~N~  164 (174)
                      .+++|++|++++|+
T Consensus       147 ~l~~L~~L~l~~n~  160 (353)
T 2z80_A          147 HLTKLQILRVGNMD  160 (353)
T ss_dssp             TCTTCCEEEEEESS
T ss_pred             cCCCCcEEECCCCc
Confidence            77777777777774

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.10  E-value=1.2e-10  Score=91.05  Aligned_cols=90  Identities=19%  Similarity=0.029  Sum_probs=68.5

Q ss_pred             cEEEEEcCCCCCCCCccccCcccc--cCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLF--TPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~--~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      ++++|++++|++.    ...+..+  ..+++|++|++++|.+++..+......+..+++|++|++++|++++..|..|+.
T Consensus        92 ~L~~L~l~~n~l~----~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           92 RLKELTLEDLKIT----GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             CCCEEEEESCCCB----SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             ceeEEEeeCCEec----cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            4888999988776    2234445  788889999999998887655321122567888899999999888777788888


Q ss_pred             CCCCCEEEccCCcccc
Q 048732          152 LSSLKHLSLGTNELNG  167 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g  167 (174)
                      +++|++|+|++|++.+
T Consensus       168 l~~L~~L~Ls~N~l~~  183 (310)
T 4glp_A          168 FPALTSLDLSDNPGLG  183 (310)
T ss_dssp             CTTCCEEECCSCTTCH
T ss_pred             CCCCCEEECCCCCCcc
Confidence            8889999999888765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.09  E-value=1.2e-10  Score=87.66  Aligned_cols=84  Identities=15%  Similarity=0.219  Sum_probs=51.6

Q ss_pred             CcEEEEEcCCCC-CCCCccccCcccccCCCCCCEEeCcC-CccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccC
Q 048732           73 GRVIKLDLAFRK-RDSAEWYMNASLFTPFQQLEFLDLSG-NNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLG  150 (174)
Q Consensus        73 ~~v~~L~L~~n~-~~~g~~~~~~~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~  150 (174)
                      .+++.|++++|+ +.    .+++..|..+++|++|++++ |.+++..+..    |..+++|++|++++|++++ +|. ++
T Consensus        55 ~~L~~L~l~~n~~l~----~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~----f~~l~~L~~L~l~~n~l~~-lp~-~~  124 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQ----QLESHSFYNLSKVTHIEIRNTRNLTYIDPDA----LKELPLLKFLGIFNTGLKM-FPD-LT  124 (239)
T ss_dssp             TTCCEEEEECCSSCC----EECTTTEESCTTCCEEEEEEETTCCEECTTS----EECCTTCCEEEEEEECCCS-CCC-CT
T ss_pred             CCCcEEeCCCCCCcc----eeCHhHcCCCcCCcEEECCCCCCeeEcCHHH----hCCCCCCCEEeCCCCCCcc-ccc-cc
Confidence            467777777775 54    44555667777777777776 7776433333    6666666666666666653 444 55


Q ss_pred             CCCCCC---EEEccCC-ccc
Q 048732          151 GLSSLK---HLSLGTN-ELN  166 (174)
Q Consensus       151 ~l~~L~---~L~Ls~N-~l~  166 (174)
                      .+++|+   +|++++| +++
T Consensus       125 ~l~~L~~L~~L~l~~N~~l~  144 (239)
T 2xwt_C          125 KVYSTDIFFILEITDNPYMT  144 (239)
T ss_dssp             TCCBCCSEEEEEEESCTTCC
T ss_pred             cccccccccEEECCCCcchh
Confidence            555555   5555555 544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.08  E-value=7.2e-11  Score=92.34  Aligned_cols=94  Identities=21%  Similarity=0.157  Sum_probs=61.3

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccc--cC-cch------------------------hhhc
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGC--VQ-NEG------------------------LDRL  125 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~--~p-~~~------------------------~~~~  125 (174)
                      .+++.|++++|++.    .+++..|..+++|++|++++|.+.+.  ++ ...                        ...+
T Consensus       145 ~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          145 PGLKVLSIAQAHSP----AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             SCCCEEEEECCSSC----CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             cCCCEEEeeCCCcc----hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            46788888888775    34466677788888888888876532  11 000                        0013


Q ss_pred             CCCCCCCEEeccCCCCCCccccccCCC---CCCCEEEccCCcccccCCC
Q 048732          126 SSLKNLKFLDLTLNHFNNSIFSSLGGL---SSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       126 ~~l~~L~~L~ls~N~l~g~~p~~l~~l---~~L~~L~Ls~N~l~g~iP~  171 (174)
                      +.+++|++||+++|++++.+|..+..+   ++|++|+|++|+|+ .+|.
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~  268 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK  268 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence            455777777777777776667666665   57777777777777 5664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.06  E-value=3.7e-10  Score=93.86  Aligned_cols=96  Identities=24%  Similarity=0.211  Sum_probs=57.8

Q ss_pred             cccceEecCCCCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcC-CCCCCCEEeccCCC
Q 048732           62 QWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLS-SLKNLKFLDLTLNH  140 (174)
Q Consensus        62 ~w~gv~c~~~~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~-~l~~L~~L~ls~N~  140 (174)
                      .+.++.|.. ...++.|+|++|++.    .+.+..+..+++|+.|++++|.+++..|..    +. .+++|++|+|++|.
T Consensus       110 ~l~~~~~~~-l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          110 NISRVSCSR-GQGKKNIYLANNKIT----MLRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             CCCCEEECC-CSSCEEEECCSSCCC----SGGGBCGGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSC
T ss_pred             cCCCCCccc-cCCCCEEECCCCCCC----CCCchhhcCCCCCCEEECCCCCCCCcChHH----HhhhCCcccEEecCCCc
Confidence            344444443 345777777777665    233445666677777777777776655554    43 56667777777777


Q ss_pred             CCCccccccCCCCCCCEEEccCCccccc
Q 048732          141 FNNSIFSSLGGLSSLKHLSLGTNELNGS  168 (174)
Q Consensus       141 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~  168 (174)
                      +++. |. +..+++|+.|+|++|+|++.
T Consensus       181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~~  206 (487)
T 3oja_A          181 IYDV-KG-QVVFAKLKTLDLSSNKLAFM  206 (487)
T ss_dssp             CCEE-EC-CCCCTTCCEEECCSSCCCEE
T ss_pred             cccc-cc-cccCCCCCEEECCCCCCCCC
Confidence            6644 22 23466677777777776653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.04  E-value=1.8e-10  Score=97.68  Aligned_cols=89  Identities=24%  Similarity=0.282  Sum_probs=49.2

Q ss_pred             CCCc-----cccce-EecCCCCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732           58 SDCC-----QWEGV-ECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL  131 (174)
Q Consensus        58 ~~~C-----~w~gv-~c~~~~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L  131 (174)
                      ..+|     .|.++ .|..  .+++.|++++|++.    .++...   +++|+.|++++|.++ .+| .      .+++|
T Consensus        40 ~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~----~lp~~l---~~~L~~L~Ls~N~l~-~ip-~------~l~~L  102 (571)
T 3cvr_A           40 ALPGENRNEAVSLLKECLI--NQFSELQLNRLNLS----SLPDNL---PPQITVLEITQNALI-SLP-E------LPASL  102 (571)
T ss_dssp             CCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCS----CCCSCC---CTTCSEEECCSSCCS-CCC-C------CCTTC
T ss_pred             CCccccccchhhhcccccc--CCccEEEeCCCCCC----ccCHhH---cCCCCEEECcCCCCc-ccc-c------ccCCC
Confidence            4567     68888 6754  46778888887765    233322   255666666666665 455 2      24555


Q ss_pred             CEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732          132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      ++|++++|+|++ +|. +..  +|++|+|++|+|++
T Consensus       103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~  134 (571)
T 3cvr_A          103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM  134 (571)
T ss_dssp             CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred             CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence            555555555553 444 332  44444444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.01  E-value=9.4e-10  Score=86.27  Aligned_cols=61  Identities=26%  Similarity=0.288  Sum_probs=31.7

Q ss_pred             CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732           99 PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus        99 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      .+++|++|++++|.+++. |.     ...+++|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus       167 ~l~~L~~L~L~~N~l~~~-~~-----~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYDV-KG-----QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             GTTTCCEEECTTSCCCEE-EC-----CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC
T ss_pred             ccCcCCEEECCCCcCccc-cc-----ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc
Confidence            344555555555554432 21     223555666666666665 33344555566666666666655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.99  E-value=5.4e-10  Score=87.66  Aligned_cols=85  Identities=24%  Similarity=0.298  Sum_probs=67.9

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|++.    .++  ....+++|++|++++|.+++ +|+.    +..+++|+.|++++|+++ .+|..+..+
T Consensus       169 ~~L~~L~L~~N~l~----~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~----~~~l~~L~~L~L~~N~l~-~l~~~~~~l  236 (317)
T 3o53_A          169 DTLEHLNLQYNFIY----DVK--GQVVFAKLKTLDLSSNKLAF-MGPE----FQSAAGVTWISLRNNKLV-LIEKALRFS  236 (317)
T ss_dssp             TTCCEEECTTSCCC----EEE--CCCCCTTCCEEECCSSCCCE-ECGG----GGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             CcCCEEECCCCcCc----ccc--cccccccCCEEECCCCcCCc-chhh----hcccCcccEEECcCCccc-chhhHhhcC
Confidence            34566666666554    221  23458999999999999984 6665    889999999999999999 689899999


Q ss_pred             CCCCEEEccCCccc-ccC
Q 048732          153 SSLKHLSLGTNELN-GSI  169 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~-g~i  169 (174)
                      ++|+.|++++|+++ +.+
T Consensus       237 ~~L~~L~l~~N~~~~~~~  254 (317)
T 3o53_A          237 QNLEHFDLRGNGFHCGTL  254 (317)
T ss_dssp             TTCCEEECTTCCCBHHHH
T ss_pred             CCCCEEEccCCCccCcCH
Confidence            99999999999998 433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.99  E-value=7.2e-10  Score=87.47  Aligned_cols=86  Identities=22%  Similarity=0.347  Sum_probs=60.0

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|++.    .+  +.+..+++|+.|++++|.+++. + .    +..+++|+.|++++|.+++..|..++.+
T Consensus       243 ~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~l~~n~l~~~-~-~----~~~l~~L~~L~L~~n~l~~~~~~~l~~l  310 (347)
T 4fmz_A          243 SQLTWLEIGTNQIS----DI--NAVKDLTKLKMLNVGSNQISDI-S-V----LNNLSQLNSLFLNNNQLGNEDMEVIGGL  310 (347)
T ss_dssp             TTCCEEECCSSCCC----CC--GGGTTCTTCCEEECCSSCCCCC-G-G----GGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred             CCCCEEECCCCccC----CC--hhHhcCCCcCEEEccCCccCCC-h-h----hcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence            34555666655544    11  2356677777777777777643 2 2    6678888888888888887777778888


Q ss_pred             CCCCEEEccCCcccccCC
Q 048732          153 SSLKHLSLGTNELNGSID  170 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP  170 (174)
                      ++|++|++++|++++..|
T Consensus       311 ~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          311 TNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             TTCSEEECCSSSCCCCGG
T ss_pred             ccCCEEEccCCccccccC
Confidence            888888888888886544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.96  E-value=6.3e-10  Score=87.81  Aligned_cols=83  Identities=20%  Similarity=0.248  Sum_probs=70.5

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      ...++.|++++|++.    .+  +.+..+++|+.|++++|.+.+..|..    +..+++|++|++++|.+++..|  +..
T Consensus       264 l~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~--~~~  331 (347)
T 4fmz_A          264 LTKLKMLNVGSNQIS----DI--SVLNNLSQLNSLFLNNNQLGNEDMEV----IGGLTNLTTLFLSQNHITDIRP--LAS  331 (347)
T ss_dssp             CTTCCEEECCSSCCC----CC--GGGGGCTTCSEEECCSSCCCGGGHHH----HHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred             CCCcCEEEccCCccC----CC--hhhcCCCCCCEEECcCCcCCCcChhH----hhccccCCEEEccCCccccccC--hhh
Confidence            468999999999876    22  34788999999999999998777766    8899999999999999997766  888


Q ss_pred             CCCCCEEEccCCccc
Q 048732          152 LSSLKHLSLGTNELN  166 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~  166 (174)
                      +++|+.|++++|.|+
T Consensus       332 l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          332 LSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEESSSCC---
T ss_pred             hhccceeehhhhccc
Confidence            999999999999986

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.96  E-value=2e-09  Score=83.69  Aligned_cols=63  Identities=35%  Similarity=0.462  Sum_probs=32.0

Q ss_pred             ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732           97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus        97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      +..+++|+.|++++|.+++.  ..    +..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       130 l~~l~~L~~L~l~~n~l~~~--~~----l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          130 LVHLPQLESLYLGNNKITDI--TV----LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GG----GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             hcCCCCCCEEEccCCcCCcc--hh----hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            33444444444444444432  11    4455555555555555554333  5555566666666665553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.96  E-value=2.2e-09  Score=83.95  Aligned_cols=80  Identities=29%  Similarity=0.472  Sum_probs=35.7

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|++++|++.    .+++  +..+++|++|++++|.+++ ++ .    +..+++|++|++++|++++ +|. +..+
T Consensus        63 ~~L~~L~L~~n~i~----~~~~--~~~l~~L~~L~L~~n~l~~-~~-~----~~~l~~L~~L~l~~n~l~~-~~~-l~~l  128 (308)
T 1h6u_A           63 NNLIGLELKDNQIT----DLAP--LKNLTKITELELSGNPLKN-VS-A----IAGLQSIKTLDLTSTQITD-VTP-LAGL  128 (308)
T ss_dssp             TTCCEEECCSSCCC----CCGG--GTTCCSCCEEECCSCCCSC-CG-G----GTTCTTCCEEECTTSCCCC-CGG-GTTC
T ss_pred             CCCCEEEccCCcCC----CChh--HccCCCCCEEEccCCcCCC-ch-h----hcCCCCCCEEECCCCCCCC-chh-hcCC
Confidence            34555555555544    1212  4455555555555555443 22 1    4444444444444444442 221 4444


Q ss_pred             CCCCEEEccCCccc
Q 048732          153 SSLKHLSLGTNELN  166 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~  166 (174)
                      ++|++|++++|+++
T Consensus       129 ~~L~~L~l~~n~l~  142 (308)
T 1h6u_A          129 SNLQVLYLDLNQIT  142 (308)
T ss_dssp             TTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCccC
Confidence            44444444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.94  E-value=3.3e-09  Score=81.26  Aligned_cols=86  Identities=28%  Similarity=0.391  Sum_probs=48.4

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcch----------------hhhcCCCCCCCEEec
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEG----------------LDRLSSLKNLKFLDL  136 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~----------------~~~~~~l~~L~~L~l  136 (174)
                      .+++.|++++|++.    .+++  +..+++|+.|++++|.+++ +|...                ...+..+++|+.|++
T Consensus        63 ~~L~~L~L~~N~i~----~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L  135 (263)
T 1xeu_A           63 TNLKELHLSHNQIS----DLSP--LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSI  135 (263)
T ss_dssp             TTCCEEECCSSCCC----CCGG--GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccC----CChh--hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCccCCChhhcCcccccEEEC
Confidence            45666777766655    2222  5566666666666666553 22210                001556666666666


Q ss_pred             cCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732          137 TLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       137 s~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      ++|++++ +| .++.+++|+.|++++|++++
T Consensus       136 s~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          136 RNNKLKS-IV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             TTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence            6666664 33 45666666666666666664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.94  E-value=2.2e-09  Score=84.03  Aligned_cols=36  Identities=25%  Similarity=0.264  Sum_probs=18.1

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccc
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNIT  114 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~  114 (174)
                      ..++.|++++|++.    .++  .+..+++|++|++++|.++
T Consensus       107 ~~L~~L~l~~n~l~----~~~--~l~~l~~L~~L~l~~n~l~  142 (308)
T 1h6u_A          107 QSIKTLDLTSTQIT----DVT--PLAGLSNLQVLYLDLNQIT  142 (308)
T ss_dssp             TTCCEEECTTSCCC----CCG--GGTTCTTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCCCC----Cch--hhcCCCCCCEEECCCCccC
Confidence            45666666666554    111  1444555555555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.93  E-value=3e-09  Score=82.63  Aligned_cols=64  Identities=28%  Similarity=0.398  Sum_probs=38.7

Q ss_pred             ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccccc
Q 048732           97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGS  168 (174)
Q Consensus        97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~  168 (174)
                      +..+++|++|++++|.+++ ++ .    +..+++|+.|++++|++++.  ..++.+++|++|++++|++++.
T Consensus       108 l~~l~~L~~L~L~~n~i~~-~~-~----l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCC-CG-G----GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             hccCCCCCEEECCCCcCCC-Ch-h----hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence            4555555555555555553 22 2    55666666666666666643  4566667777777777776653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.90  E-value=3.6e-09  Score=90.27  Aligned_cols=63  Identities=35%  Similarity=0.462  Sum_probs=34.3

Q ss_pred             ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732           97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus        97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      +..+++|+.|+|++|.+++.  ..    +..+++|+.|+|++|.+++..|  +..+++|+.|+|++|+|++
T Consensus       127 l~~l~~L~~L~Ls~N~l~~l--~~----l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNKITDI--TV----LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             GGGCTTCSEEECCSSCCCCC--GG----GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ccCCCccCEEECCCCccCCc--hh----hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            44455555555555555432  12    5556666666666666654444  5555666666666665553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.85  E-value=5.8e-09  Score=89.03  Aligned_cols=83  Identities=27%  Similarity=0.298  Sum_probs=54.4

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      +++.|+|++|++.    .+  +.+..+++|+.|++++|.+.+ ++ .    +..+++|+.|+|++|++++.  ..+..++
T Consensus        88 ~L~~L~Ls~N~l~----~l--~~l~~l~~L~~L~Ls~N~l~~-l~-~----l~~l~~L~~L~Ls~N~l~~l--~~l~~l~  153 (605)
T 1m9s_A           88 NLGWLFLDENKIK----DL--SSLKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLT  153 (605)
T ss_dssp             TCCEEECCSSCCC----CC--TTSTTCTTCCEEECTTSCCCC-CG-G----GGGCTTCSEEECCSSCCCCC--GGGGSCT
T ss_pred             CCCEEECcCCCCC----CC--hhhccCCCCCEEEecCCCCCC-Cc-c----ccCCCccCEEECCCCccCCc--hhhcccC
Confidence            4555555555443    11  235666777777777777664 32 2    66777788888888877754  5577788


Q ss_pred             CCCEEEccCCcccccCC
Q 048732          154 SLKHLSLGTNELNGSID  170 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g~iP  170 (174)
                      +|+.|+|++|+|++..|
T Consensus       154 ~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          154 KLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             TCSEEECCSSCCCCCGG
T ss_pred             CCCEEECcCCcCCCchh
Confidence            88888888888876544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.85  E-value=8.1e-09  Score=79.10  Aligned_cols=82  Identities=27%  Similarity=0.287  Sum_probs=58.9

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc-----
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS-----  147 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~-----  147 (174)
                      .+++.|++++|++.    .++  .+..+++|+.|++++|.+++..+      +..+++|++|++++|++++ +|.     
T Consensus        41 ~~L~~L~l~~n~i~----~l~--~l~~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~-l~~~~~~~  107 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQ----SLA--GMQFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKN-LNGIPSAC  107 (263)
T ss_dssp             TTCSEEECTTSCCC----CCT--TGGGCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSC-CTTCCCSS
T ss_pred             CcCcEEECcCCCcc----cch--HHhhCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCC-cCccccCc
Confidence            57899999999876    333  57889999999999999985433      6677888888888777764 332     


Q ss_pred             ---------------ccCCCCCCCEEEccCCcccc
Q 048732          148 ---------------SLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       148 ---------------~l~~l~~L~~L~Ls~N~l~g  167 (174)
                                     .+..+++|+.|++++|++++
T Consensus       108 L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A          108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             CCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB
T ss_pred             ccEEEccCCccCCChhhcCcccccEEECCCCcCCC
Confidence                           24455556666666665553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.85  E-value=5.1e-09  Score=86.13  Aligned_cols=41  Identities=22%  Similarity=0.391  Sum_probs=23.0

Q ss_pred             cCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732          125 LSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       125 ~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      +..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            4455555555555555555444  5555555555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.84  E-value=1e-08  Score=84.56  Aligned_cols=80  Identities=20%  Similarity=0.262  Sum_probs=58.8

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|++++|++.    .+   .+..+++|++|++++|.+++. |      ++.+++|++|++++|++++ +|  ++.+
T Consensus        64 ~~L~~L~Ls~n~l~----~~---~~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~-l~--~~~l  126 (457)
T 3bz5_A           64 TGLTKLICTSNNIT----TL---DLSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTK-LD--VSQN  126 (457)
T ss_dssp             TTCSEEECCSSCCS----CC---CCTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSC-CC--CTTC
T ss_pred             CCCCEEEccCCcCC----eE---ccccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCe-ec--CCCC
Confidence            46777777777665    22   167778888888888887753 3      6678888888888888875 44  7788


Q ss_pred             CCCCEEEccCCcccccCC
Q 048732          153 SSLKHLSLGTNELNGSID  170 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP  170 (174)
                      ++|++|++++|++++ +|
T Consensus       127 ~~L~~L~l~~N~l~~-l~  143 (457)
T 3bz5_A          127 PLLTYLNCARNTLTE-ID  143 (457)
T ss_dssp             TTCCEEECTTSCCSC-CC
T ss_pred             CcCCEEECCCCccce-ec
Confidence            888888888888876 44

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.81  E-value=1.8e-08  Score=83.01  Aligned_cols=82  Identities=15%  Similarity=0.195  Sum_probs=53.9

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|++.    .+ + .+..+++|++|++++|.+++ +|..       +++|++|++++|++++ +| .++.+
T Consensus       131 ~~L~~L~L~~n~l~----~l-p-~~~~l~~L~~L~l~~N~l~~-lp~~-------~~~L~~L~L~~n~l~~-l~-~~~~l  194 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE----KL-P-ELQNSSFLKIIDVDNNSLKK-LPDL-------PPSLEFIAAGNNQLEE-LP-ELQNL  194 (454)
T ss_dssp             TTCCEEECCSSCCS----SC-C-CCTTCTTCCEEECCSSCCSC-CCCC-------CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred             CCCCEEECcCCCCC----CC-c-ccCCCCCCCEEECCCCcCcc-cCCC-------cccccEEECcCCcCCc-Cc-cccCC
Confidence            35666666666554    22 2 36777777788887777774 5543       2467777777777774 55 47777


Q ss_pred             CCCCEEEccCCcccccCCC
Q 048732          153 SSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~iP~  171 (174)
                      ++|++|++++|++++ +|.
T Consensus       195 ~~L~~L~l~~N~l~~-l~~  212 (454)
T 1jl5_A          195 PFLTAIYADNNSLKK-LPD  212 (454)
T ss_dssp             TTCCEEECCSSCCSS-CCC
T ss_pred             CCCCEEECCCCcCCc-CCC
Confidence            777777777777775 443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.80  E-value=2e-08  Score=82.81  Aligned_cols=77  Identities=27%  Similarity=0.342  Sum_probs=49.7

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.|++++|++.    .++   +..+++|+.|++++|.+++. +      ++.+++|+.|++++|++++ +|  ++.++
T Consensus       171 ~L~~L~ls~n~l~----~l~---l~~l~~L~~L~l~~N~l~~~-~------l~~l~~L~~L~Ls~N~l~~-ip--~~~l~  233 (457)
T 3bz5_A          171 QLTTLDCSFNKIT----ELD---VSQNKLLNRLNCDTNNITKL-D------LNQNIQLTFLDCSSNKLTE-ID--VTPLT  233 (457)
T ss_dssp             TCCEEECCSSCCC----CCC---CTTCTTCCEEECCSSCCSCC-C------CTTCTTCSEEECCSSCCSC-CC--CTTCT
T ss_pred             cCCEEECCCCccc----eec---cccCCCCCEEECcCCcCCee-c------cccCCCCCEEECcCCcccc-cC--ccccC
Confidence            4555555555544    111   45566666666666666643 2      6677777777777777775 55  67777


Q ss_pred             CCCEEEccCCcccc
Q 048732          154 SLKHLSLGTNELNG  167 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g  167 (174)
                      +|+.|++++|++++
T Consensus       234 ~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          234 QLTYFDCSVNPLTE  247 (457)
T ss_dssp             TCSEEECCSSCCSC
T ss_pred             CCCEEEeeCCcCCC
Confidence            77777777777776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.80  E-value=1.1e-08  Score=84.15  Aligned_cols=63  Identities=25%  Similarity=0.354  Sum_probs=26.4

Q ss_pred             ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732           97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus        97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      +..+++|+.|++++|.+++..+      +..+++|+.|++++|++++..|  ++.+++|+.|++++|++++
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred             hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence            3344444444444444442211      3344444444444444443222  3344444444444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.79  E-value=8.4e-09  Score=88.29  Aligned_cols=63  Identities=27%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732           99 PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus        99 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      .+++|+.|++++|.++ .+|.       .+++|+.|++++|+++ .+|..+..+++|+.|+|++|+++|.+|
T Consensus       239 ~l~~L~~L~Ls~N~L~-~lp~-------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          239 LPSELKELMVSGNRLT-SLPM-------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CCTTCCEEECCSSCCS-CCCC-------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             CCCcCcEEECCCCCCC-cCCc-------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence            3466667777777666 3443       4678999999999998 788889999999999999999988665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.78  E-value=4.9e-10  Score=87.98  Aligned_cols=86  Identities=22%  Similarity=0.178  Sum_probs=69.7

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccc-cCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGC-VQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      ..++.+++++|.+. +   ..+. +..+++|++|++++|.+++. +|..    +..+++|++|++++|.+++..|..++.
T Consensus        70 ~~l~~L~l~~n~l~-~---~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~l~~  140 (336)
T 2ast_B           70 QGVIAFRCPRSFMD-Q---PLAE-HFSPFRVQHMDLSNSVIEVSTLHGI----LSQCSKLQNLSLEGLRLSDPIVNTLAK  140 (336)
T ss_dssp             TTCSEEECTTCEEC-S---CCCS-CCCCBCCCEEECTTCEECHHHHHHH----HTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred             ccceEEEcCCcccc-c---cchh-hccCCCCCEEEccCCCcCHHHHHHH----HhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence            45666777766554 1   2233 56789999999999998865 6666    889999999999999999889999999


Q ss_pred             CCCCCEEEccCC-cccc
Q 048732          152 LSSLKHLSLGTN-ELNG  167 (174)
Q Consensus       152 l~~L~~L~Ls~N-~l~g  167 (174)
                      +++|++|++++| .+++
T Consensus       141 ~~~L~~L~L~~~~~l~~  157 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSE  157 (336)
T ss_dssp             CTTCSEEECTTCBSCCH
T ss_pred             CCCCCEEECCCCCCCCH
Confidence            999999999999 6775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.78  E-value=6.2e-09  Score=88.26  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             CEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732          132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      +.|+|++|+|+ .+|..+..+++|+.|+|++|+|+|.+|
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            77888888887 577777778888888888888887665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.78  E-value=7.5e-09  Score=85.30  Aligned_cols=65  Identities=32%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             CCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCC--ccccccCCC-------------CCCCEEEccCCc
Q 048732          100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN--SIFSSLGGL-------------SSLKHLSLGTNE  164 (174)
Q Consensus       100 l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g--~~p~~l~~l-------------~~L~~L~Ls~N~  164 (174)
                      +++|+.|++++|.++ .+|.       .+++|++|++++|++++  .+|..++.+             ++|+.|++++|+
T Consensus       336 ~~~L~~L~L~~N~l~-~lp~-------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          336 PPRLERLIASFNHLA-EVPE-------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             CTTCCEEECCSSCCS-CCCC-------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred             CCcCCEEECCCCccc-cccc-------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence            456666666666665 3443       35778888888888887  677777766             778888888888


Q ss_pred             ccc--cCCCC
Q 048732          165 LNG--SIDIE  172 (174)
Q Consensus       165 l~g--~iP~~  172 (174)
                      ++|  .||.+
T Consensus       408 l~~~~~iP~s  417 (454)
T 1jl5_A          408 LREFPDIPES  417 (454)
T ss_dssp             ----------
T ss_pred             CCccccchhh
Confidence            886  67653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.73  E-value=4.9e-09  Score=82.20  Aligned_cols=88  Identities=23%  Similarity=0.261  Sum_probs=72.6

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCC-CCCCc-cccccC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLN-HFNNS-IFSSLG  150 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N-~l~g~-~p~~l~  150 (174)
                      .+++.|++++|++....   .+..+..+++|++|++++|.+++..+..    ++.+++|++|++++| .+++. +|..+.
T Consensus        93 ~~L~~L~L~~~~l~~~~---~~~~~~~~~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~l~~~~~  165 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLLS  165 (336)
T ss_dssp             BCCCEEECTTCEECHHH---HHHHHTTBCCCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             CCCCEEEccCCCcCHHH---HHHHHhhCCCCCEEeCcCcccCHHHHHH----HhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence            57899999999765211   2455788999999999999988777766    888999999999999 78763 777788


Q ss_pred             CCCCCCEEEccCC-cccc
Q 048732          151 GLSSLKHLSLGTN-ELNG  167 (174)
Q Consensus       151 ~l~~L~~L~Ls~N-~l~g  167 (174)
                      .+++|++|++++| ++++
T Consensus       166 ~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          166 SCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             HCTTCCEEECCCCTTCCH
T ss_pred             cCCCCCEEcCCCCCCcCh
Confidence            8999999999999 8875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.73  E-value=1.2e-08  Score=78.81  Aligned_cols=67  Identities=25%  Similarity=0.306  Sum_probs=55.3

Q ss_pred             CCCCCCEEeCcCCcccc--ccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC--CCCEEEccCCcccccCCC
Q 048732           99 PFQQLEFLDLSGNNITG--CVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS--SLKHLSLGTNELNGSIDI  171 (174)
Q Consensus        99 ~l~~L~~L~ls~N~l~g--~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~--~L~~L~Ls~N~l~g~iP~  171 (174)
                      ++++|+.|+|++|.+++  .+|..    +..+++|+.|+|++|++++.  ..+..++  +|++|+|++|.+++.+|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~----~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTH----HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hCCCCCEEECCCCCCCCCccchhH----HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            57899999999999997  45555    67899999999999999965  2344444  899999999999987773

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.72  E-value=1.9e-09  Score=86.56  Aligned_cols=68  Identities=26%  Similarity=0.263  Sum_probs=38.9

Q ss_pred             cccCCCCCCEEeCcCCccc----cccCcchhhhcCCCCCCCEEeccCCCCCCc----ccccc--CCCCCCCEEEccCCcc
Q 048732           96 LFTPFQQLEFLDLSGNNIT----GCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSL--GGLSSLKHLSLGTNEL  165 (174)
Q Consensus        96 ~~~~l~~L~~L~ls~N~l~----g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l--~~l~~L~~L~Ls~N~l  165 (174)
                      .+..+++|+.|++++|.++    +.+|..    +..+++|+.|+|++|.+++.    +|..+  +.+++|++|+|++|++
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~----l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIA----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHH----GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHH----HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            3455566666666666654    334443    55666666666666666544    44444  2356666666666666


Q ss_pred             cc
Q 048732          166 NG  167 (174)
Q Consensus       166 ~g  167 (174)
                      ++
T Consensus       287 ~~  288 (386)
T 2ca6_A          287 EL  288 (386)
T ss_dssp             BH
T ss_pred             CH
Confidence            54

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.72  E-value=2.7e-09  Score=85.68  Aligned_cols=94  Identities=19%  Similarity=0.187  Sum_probs=48.9

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCC---ccccccCcch---hhhcCCCCCCCEEeccCCCCCC---
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGN---NITGCVQNEG---LDRLSSLKNLKFLDLTLNHFNN---  143 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N---~l~g~~p~~~---~~~~~~l~~L~~L~ls~N~l~g---  143 (174)
                      ..++.|+|++|++...........+..+++|+.|++++|   ++++.+|...   ...+..+++|++|+|++|.+++   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            346666666665541110001123455666666666664   3334444320   1113566666666666666665   


Q ss_pred             -ccccccCCCCCCCEEEccCCccc
Q 048732          144 -SIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       144 -~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                       .+|..+..+++|++|+|++|.++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCC
Confidence             35555666666666666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.71  E-value=1.5e-09  Score=86.69  Aligned_cols=90  Identities=24%  Similarity=0.292  Sum_probs=52.3

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCC-----CCCCEEeCcCCccccccCcchhhhcCCC-CCCCEEeccCCCCCCcccc
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPF-----QQLEFLDLSGNNITGCVQNEGLDRLSSL-KNLKFLDLTLNHFNNSIFS  147 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l-----~~L~~L~ls~N~l~g~~p~~~~~~~~~l-~~L~~L~ls~N~l~g~~p~  147 (174)
                      .+++|+|++|++..    ..+..+..+     ++|++|++++|.+++..+......+..+ ++|++|++++|++++..+.
T Consensus        52 ~L~~L~Ls~N~l~~----~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  127 (362)
T 3goz_A           52 SVTSLNLSGNSLGF----KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS  127 (362)
T ss_dssp             TCCEEECCSSCGGG----SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             ceeEEECcCCCCCH----HHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH
Confidence            56777777776541    112223332     6777777777777654443312223444 6777777777777655444


Q ss_pred             c----cCC-CCCCCEEEccCCcccc
Q 048732          148 S----LGG-LSSLKHLSLGTNELNG  167 (174)
Q Consensus       148 ~----l~~-l~~L~~L~Ls~N~l~g  167 (174)
                      .    +.. .++|++|+|++|++++
T Consensus       128 ~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A          128 EFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHHHHHhCCCceeEEEccCCcCCH
Confidence            3    333 2577777777777763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.68  E-value=9.2e-11  Score=86.07  Aligned_cols=92  Identities=24%  Similarity=0.278  Sum_probs=53.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcch------------------hhhcCCCCCCCEE
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEG------------------LDRLSSLKNLKFL  134 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~------------------~~~~~~l~~L~~L  134 (174)
                      ..++.|++++|++.    .+ + .+..+++|+.|++++|.++ .+|...                  ...+..+++|++|
T Consensus        48 ~~L~~L~ls~n~l~----~l-~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L  120 (198)
T 1ds9_A           48 KACKHLALSTNNIE----KI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL  120 (198)
T ss_dssp             TTCSEEECSEEEES----CC-C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEE
T ss_pred             CCCCEEECCCCCCc----cc-c-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEE
Confidence            35666666666554    12 2 3455555555555555555 344320                  0014456667777


Q ss_pred             eccCCCCCCccc-cccCCCCCCCEEEccCCcccccCCC
Q 048732          135 DLTLNHFNNSIF-SSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       135 ~ls~N~l~g~~p-~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      ++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus       121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             ECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            777777763222 3677778888888888887776553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.64  E-value=2.3e-10  Score=83.97  Aligned_cols=65  Identities=26%  Similarity=0.350  Sum_probs=57.2

Q ss_pred             cccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732           96 LFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus        96 ~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      .+..+++|++|++++|.+++ +| .    +..+++|++|++++|.++ .+|..+..+++|++|++++|++++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~----~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~  107 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-S----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-C----HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-c----cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc
Confidence            68889999999999999986 77 4    888999999999999998 678877777889999999998875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.62  E-value=1.7e-08  Score=86.40  Aligned_cols=55  Identities=25%  Similarity=0.210  Sum_probs=28.1

Q ss_pred             CCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732          100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       100 l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      +++|++|++++|.++ .+|.       .+++|++|++++|.+++ +|.   .+++|+.|++++|+++
T Consensus        80 l~~L~~L~Ls~N~l~-~lp~-------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~  134 (622)
T 3g06_A           80 PPELRTLEVSGNQLT-SLPV-------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT  134 (622)
T ss_dssp             CTTCCEEEECSCCCS-CCCC-------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS
T ss_pred             CCCCCEEEcCCCcCC-cCCC-------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC
Confidence            445555555555554 2332       34555666666665552 333   3344555555555555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.54  E-value=1e-08  Score=83.62  Aligned_cols=94  Identities=21%  Similarity=0.108  Sum_probs=60.6

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCC-CCCCCEEeccCCCCCC----ccccc
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSS-LKNLKFLDLTLNHFNN----SIFSS  148 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~-l~~L~~L~ls~N~l~g----~~p~~  148 (174)
                      .++.|++++|++........+..+..+++|++|++++|.+++..+......+.. .++|++|++++|.+++    .+|..
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~  393 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  393 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence            455555555544311100012334556788888888887765433321111332 6789999999999886    67888


Q ss_pred             cCCCCCCCEEEccCCcccc
Q 048732          149 LGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       149 l~~l~~L~~L~Ls~N~l~g  167 (174)
                      +..+++|++|++++|++++
T Consensus       394 l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          394 LLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHCCCCCEEECCSSSCCH
T ss_pred             HHhCCCccEEECCCCCCCH
Confidence            8888999999999998875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.48  E-value=3.3e-08  Score=78.80  Aligned_cols=93  Identities=23%  Similarity=0.300  Sum_probs=70.7

Q ss_pred             CCcEEEEEcCCCCCCCCccccCc----ccccCCC-CCCEEeCcCCccccccCcchhhhcCCC-CCCCEEeccCCCCCCcc
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNA----SLFTPFQ-QLEFLDLSGNNITGCVQNEGLDRLSSL-KNLKFLDLTLNHFNNSI  145 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~----~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~~~~~l-~~L~~L~ls~N~l~g~~  145 (174)
                      ...++.|+|++|++.    ....    ..+..++ +|++|++++|.+++..+......+... ++|++|++++|++++..
T Consensus        21 ~~~L~~L~Ls~n~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~   96 (362)
T 3goz_A           21 PHGVTSLDLSLNNLY----SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS   96 (362)
T ss_dssp             CTTCCEEECTTSCGG----GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             CCCceEEEccCCCCC----hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence            356999999999876    2333    5577888 899999999999876555411112333 89999999999999777


Q ss_pred             cccc----CCC-CCCCEEEccCCccccc
Q 048732          146 FSSL----GGL-SSLKHLSLGTNELNGS  168 (174)
Q Consensus       146 p~~l----~~l-~~L~~L~Ls~N~l~g~  168 (174)
                      +..+    ..+ ++|++|++++|++++.
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             HHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            6644    444 8999999999999864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.44  E-value=2.2e-08  Score=81.66  Aligned_cols=88  Identities=20%  Similarity=0.260  Sum_probs=55.2

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCC----CCCEEeCcCCcccc----ccCcchhhhcCCCCCCCEEeccCCCCCCc
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQ----QLEFLDLSGNNITG----CVQNEGLDRLSSLKNLKFLDLTLNHFNNS  144 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~----~L~~L~ls~N~l~g----~~p~~~~~~~~~l~~L~~L~ls~N~l~g~  144 (174)
                      .++++|++++|++.....   ...+..++    +|++|++++|.++.    .++..    +..+++|++|++++|.+++.
T Consensus        56 ~~L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~----l~~~~~L~~L~Ls~n~i~~~  128 (461)
T 1z7x_W           56 PALAELNLRSNELGDVGV---HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST----LRTLPTLQELHLSDNLLGDA  128 (461)
T ss_dssp             TTCCEEECTTCCCHHHHH---HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH----TTSCTTCCEEECCSSBCHHH
T ss_pred             CCcCEEeCCCCcCChHHH---HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH----HccCCceeEEECCCCcCchH
Confidence            467788888776542110   11122333    68888888887763    34444    77788888888888887654


Q ss_pred             ccccc-----CCCCCCCEEEccCCcccc
Q 048732          145 IFSSL-----GGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       145 ~p~~l-----~~l~~L~~L~Ls~N~l~g  167 (174)
                      .+..+     ...++|++|++++|++++
T Consensus       129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W          129 GLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence            33322     234568888888887775

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.43  E-value=4.8e-07  Score=71.10  Aligned_cols=88  Identities=15%  Similarity=0.204  Sum_probs=74.6

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCC-EEeccCCCCCCccccccCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLK-FLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~-~L~ls~N~l~g~~p~~l~~  151 (174)
                      ..++.|+|++|++.    .++...|..+++|+.+++..| +. .++...   |.++++|+ .+++.. .++.+-+..|.+
T Consensus       226 ~~L~~l~L~~n~i~----~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~a---F~~~~~L~~~l~l~~-~l~~I~~~aF~~  295 (329)
T 3sb4_A          226 PNLVSLDISKTNAT----TIPDFTFAQKKYLLKIKLPHN-LK-TIGQRV---FSNCGRLAGTLELPA-SVTAIEFGAFMG  295 (329)
T ss_dssp             TTCCEEECTTBCCC----EECTTTTTTCTTCCEEECCTT-CC-EECTTT---TTTCTTCCEEEEECT-TCCEECTTTTTT
T ss_pred             CCCeEEECCCCCcc----eecHhhhhCCCCCCEEECCcc-cc-eehHHH---hhCChhccEEEEEcc-cceEEchhhhhC
Confidence            57999999998887    788889999999999999998 65 466544   99999999 999998 777455678999


Q ss_pred             CCCCCEEEccCCcccccCCC
Q 048732          152 LSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      +++|+.++++.|+++ .|+.
T Consensus       296 c~~L~~l~l~~n~i~-~I~~  314 (329)
T 3sb4_A          296 CDNLRYVLATGDKIT-TLGD  314 (329)
T ss_dssp             CTTEEEEEECSSCCC-EECT
T ss_pred             CccCCEEEeCCCccC-ccch
Confidence            999999999999887 3543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.43  E-value=2e-08  Score=80.85  Aligned_cols=69  Identities=19%  Similarity=0.131  Sum_probs=33.4

Q ss_pred             cCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccccCCCCCCCEEEccCCccc
Q 048732           98 TPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus        98 ~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      ...++|++|++++|.++..-.......+...++|+.|+|++|.++..    +...+...++|++|+|++|.|+
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            34455555555555554211000011144555666666666666532    2233344556666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.36  E-value=5.9e-07  Score=71.21  Aligned_cols=65  Identities=17%  Similarity=0.234  Sum_probs=44.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCE-EeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEF-LDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS  144 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~-L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~  144 (174)
                      .+++.|+|++|++.+   .+++..|.+++++++ +.+..|++....|..    |..+++|++|++++|++++.
T Consensus        54 ~~L~~L~Ls~N~i~~---~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~----f~~l~~L~~L~l~~n~l~~~  119 (350)
T 4ay9_X           54 GDLEKIEISQNDVLE---VIEADVFSNLPKLHEIRIEKANNLLYINPEA----FQNLPNLQYLLISNTGIKHL  119 (350)
T ss_dssp             TTCCEEEEECCTTCC---EECTTSBCSCTTCCEEEEEEETTCCEECTTS----BCCCTTCCEEEEEEECCSSC
T ss_pred             CCCCEEECcCCCCCC---ccChhHhhcchhhhhhhcccCCcccccCchh----hhhccccccccccccccccC
Confidence            578999999998751   244556777777665 455567777544555    77777788888777777643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.35  E-value=9.5e-08  Score=69.45  Aligned_cols=94  Identities=17%  Similarity=0.146  Sum_probs=44.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEec--cCCCCCCc----cc
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDL--TLNHFNNS----IF  146 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~l--s~N~l~g~----~p  146 (174)
                      ..+++|+|++|++...........+...+.|++|++++|.+...--......+...++|++|+|  +.|.++..    +.
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~  144 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  144 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence            3455666666655421100011223334556666666666543210000112455566666666  55666533    22


Q ss_pred             cccCCCCCCCEEEccCCccc
Q 048732          147 SSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       147 ~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      ..+...++|++|+|++|.+.
T Consensus       145 ~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          145 NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCcCEEeccCCCCC
Confidence            33444456666666666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=1.8e-07  Score=72.17  Aligned_cols=81  Identities=23%  Similarity=0.275  Sum_probs=60.9

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc-----
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS-----  147 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~-----  147 (174)
                      ..++.|+|++|++.+ . .-.+..+..+++|+.|+|++|.+++. . . ...+..+ +|+.|+|++|.+++.+|+     
T Consensus       170 ~~L~~L~Ls~N~l~~-l-~~l~~~~~~l~~L~~L~Ls~N~i~~~-~-~-l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          170 PELLSLNLSNNRLYR-L-DDMSSIVQKAPNLKILNLSGNELKSE-R-E-LDKIKGL-KLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGTTHHHHSTTCCEEECTTSCCCSG-G-G-GGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred             CCCCEEECCCCCCCC-C-ccchhHHhhCCCCCEEECCCCccCCc-h-h-hhhcccC-CcceEEccCCcCccccCcchhHH
Confidence            579999999998872 1 01134566899999999999999864 1 1 0114455 999999999999987763     


Q ss_pred             --ccCCCCCCCEEE
Q 048732          148 --SLGGLSSLKHLS  159 (174)
Q Consensus       148 --~l~~l~~L~~L~  159 (174)
                        .+..+++|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence              367789999886

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.26  E-value=3e-07  Score=73.95  Aligned_cols=69  Identities=19%  Similarity=0.195  Sum_probs=44.3

Q ss_pred             CCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccccCCCCCCCEEEccCCcccc
Q 048732           99 PFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus        99 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      ..++|+.|++++|.++..-.......+..+++|++|+|++|.++..    ++..+...++|+.|+|++|.|+.
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            3466777777777765321111111256677888888888887642    34556667788888888888763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.19  E-value=1.4e-07  Score=68.49  Aligned_cols=96  Identities=16%  Similarity=0.127  Sum_probs=69.8

Q ss_pred             CCcEEEEEcCCC-CCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cc
Q 048732           72 TGRVIKLDLAFR-KRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IF  146 (174)
Q Consensus        72 ~~~v~~L~L~~n-~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p  146 (174)
                      ...+++|+|++| .+...........+...++|++|++++|.+...--......+...++|++|+|++|.++..    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            467999999999 7763221112334567789999999999986431111122266778999999999999854    45


Q ss_pred             cccCCCCCCCEEEc--cCCcccc
Q 048732          147 SSLGGLSSLKHLSL--GTNELNG  167 (174)
Q Consensus       147 ~~l~~l~~L~~L~L--s~N~l~g  167 (174)
                      ..+...++|++|+|  ++|.|+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHhCCCceEEEecCCCCCCCH
Confidence            67788889999999  8899863

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.99  E-value=7.2e-07  Score=74.86  Aligned_cols=66  Identities=15%  Similarity=0.081  Sum_probs=49.6

Q ss_pred             CCCCCCEEeCcCCccccc-cCcchhhhcCCCCCCCEEeccCCCCCCc-cccccCCCCCCCEEEccCCccccc
Q 048732           99 PFQQLEFLDLSGNNITGC-VQNEGLDRLSSLKNLKFLDLTLNHFNNS-IFSSLGGLSSLKHLSLGTNELNGS  168 (174)
Q Consensus        99 ~l~~L~~L~ls~N~l~g~-~p~~~~~~~~~l~~L~~L~ls~N~l~g~-~p~~l~~l~~L~~L~Ls~N~l~g~  168 (174)
                      .+++|+.|++++|.+++. ++..    +..+++|++|++++|.+++. ++..+..+++|++|+|++|+++..
T Consensus       461 ~~~~L~~L~L~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          461 YSPNVRWMLLGYVGESDEGLMEF----SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             SCTTCCEEEECSCCSSHHHHHHH----HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             hCccceEeeccCCCCCHHHHHHH----HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            467788888888887652 3333    57888999999999988755 444556788899999999988743

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.75  E-value=5.7e-05  Score=59.10  Aligned_cols=78  Identities=15%  Similarity=0.201  Sum_probs=65.9

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCC-EEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLE-FLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~-~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      ..++.|+|..| +.    .+....|..+++|+ .+++.+ .++ .++...   |.++++|+.++++.|.++..-+..|.+
T Consensus       250 ~~L~~l~l~~n-i~----~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~a---F~~c~~L~~l~l~~n~i~~I~~~aF~~  319 (329)
T 3sb4_A          250 KYLLKIKLPHN-LK----TIGQRVFSNCGRLAGTLELPA-SVT-AIEFGA---FMGCDNLRYVLATGDKITTLGDELFGN  319 (329)
T ss_dssp             TTCCEEECCTT-CC----EECTTTTTTCTTCCEEEEECT-TCC-EECTTT---TTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred             CCCCEEECCcc-cc----eehHHHhhCChhccEEEEEcc-cce-EEchhh---hhCCccCCEEEeCCCccCccchhhhcC
Confidence            47899999987 66    67788899999999 999998 666 455433   999999999999999999666678999


Q ss_pred             CCCCCEEEc
Q 048732          152 LSSLKHLSL  160 (174)
Q Consensus       152 l~~L~~L~L  160 (174)
                      +++|+.++.
T Consensus       320 ~~~L~~ly~  328 (329)
T 3sb4_A          320 GVPSKLIYK  328 (329)
T ss_dssp             TCCCCEEEC
T ss_pred             Ccchhhhcc
Confidence            999999864

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.75  E-value=7.5e-05  Score=51.12  Aligned_cols=38  Identities=29%  Similarity=0.325  Sum_probs=29.0

Q ss_pred             CCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCC
Q 048732          101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN  142 (174)
Q Consensus       101 ~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~  142 (174)
                      ++|+.|+|++|+|+. +|...   |..+++|+.|+|++|.+.
T Consensus        31 ~~l~~L~Ls~N~l~~-l~~~~---f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLTA-LPPGL---LDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCSS-CCTTT---GGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCCc-cChhh---hhhccccCEEEecCCCee
Confidence            368888999998884 55443   778888888888888773

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.72  E-value=1.4e-06  Score=73.14  Aligned_cols=65  Identities=12%  Similarity=0.188  Sum_probs=43.7

Q ss_pred             CCCCCCEEeCcCCccccc----cCcchhhhcCCCCCCCEEeccCCCCC----CccccccCCCCCCCEEEccCCcccc
Q 048732           99 PFQQLEFLDLSGNNITGC----VQNEGLDRLSSLKNLKFLDLTLNHFN----NSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus        99 ~l~~L~~L~ls~N~l~g~----~p~~~~~~~~~l~~L~~L~ls~N~l~----g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      .+++|++|++++|.+++.    ++..    ...+++|++|++++|.++    +.++..+..+++|+.|++++|.+.+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~----~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHEL----AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHH----HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             hCCCCCEEECccccccCcchhHHHHH----HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            567888888888876544    2222    446777888888887776    2344455667778888888777654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.70  E-value=1.5e-05  Score=57.56  Aligned_cols=84  Identities=20%  Similarity=0.165  Sum_probs=61.7

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCc-cccccCcchhhhcCCC----CCCCEEeccCCC-CCCccc
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNN-ITGCVQNEGLDRLSSL----KNLKFLDLTLNH-FNNSIF  146 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~~~~~l----~~L~~L~ls~N~-l~g~~p  146 (174)
                      -.+++||++++.+....+    ..+..+++|+.|+|+++. ++..    ....+..+    ++|++|+|+++. ++..--
T Consensus        61 ~~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~~ItD~----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIEDG----CLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             CCEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCTTCCHH----HHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             ceEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCCccCHH----HHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            479999999998763332    336789999999999985 5422    11225554    479999999974 775433


Q ss_pred             cccCCCCCCCEEEccCCc
Q 048732          147 SSLGGLSSLKHLSLGTNE  164 (174)
Q Consensus       147 ~~l~~l~~L~~L~Ls~N~  164 (174)
                      ..+..+++|+.|+|+++.
T Consensus       133 ~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHGGGCTTCCEEEEESCT
T ss_pred             HHHhcCCCCCEEECCCCC
Confidence            457789999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.60  E-value=5.4e-06  Score=69.44  Aligned_cols=64  Identities=14%  Similarity=0.204  Sum_probs=39.1

Q ss_pred             CCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc-ccCCCCCCCEEEccCCccc
Q 048732          100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS-SLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       100 l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~-~l~~l~~L~~L~Ls~N~l~  166 (174)
                      +++|+.|++++|.+++......   ...+++|+.|++++|.+++.... ....+++|+.|++++|+++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l---~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHV---LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHH---HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             chhccEeeccCCCCcHHHHHHH---HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            5667777777776654332220   24567777777777777544333 3445677777777777764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.44  E-value=2.1e-05  Score=65.88  Aligned_cols=84  Identities=19%  Similarity=0.161  Sum_probs=41.7

Q ss_pred             CcEEEEEcCCCCCCCCccccCccccc-CCCCCCEEeCcCC-ccccc-cCcchhhhcCCCCCCCEEeccCCCCCCcccccc
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFT-PFQQLEFLDLSGN-NITGC-VQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSL  149 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~-~l~~L~~L~ls~N-~l~g~-~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l  149 (174)
                      .++++|+|+++.+....    ...+. .+++|+.|++++| .++.. ++..    +..+++|++|++++|.+++..+..+
T Consensus       105 ~~L~~L~L~~~~~~~~~----~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~----~~~~~~L~~L~L~~~~i~~~~~~~l  176 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDC----LELIAKSFKNFKVLVLSSCEGFSTDGLAAI----AATCRNLKELDLRESDVDDVSGHWL  176 (594)
T ss_dssp             TTCCEEEEESCBCCHHH----HHHHHHHCTTCCEEEEESCEEEEHHHHHHH----HHHCTTCCEEECTTCEEECCCGGGG
T ss_pred             CCCCeEEeeCcEEcHHH----HHHHHHhCCCCcEEeCCCcCCCCHHHHHHH----HHhCCCCCEEeCcCCccCCcchHHH
Confidence            45777777777554111    11122 3556666666666 33321 2221    3355666666666666554333222


Q ss_pred             ----CCCCCCCEEEccCCc
Q 048732          150 ----GGLSSLKHLSLGTNE  164 (174)
Q Consensus       150 ----~~l~~L~~L~Ls~N~  164 (174)
                          ..+++|+.|++++|.
T Consensus       177 ~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          177 SHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             GGSCTTCCCCCEEECTTCC
T ss_pred             HHHhhcCCcCcEEEecccC
Confidence                244456666665554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.26  E-value=3.5e-05  Score=61.74  Aligned_cols=66  Identities=17%  Similarity=0.281  Sum_probs=35.4

Q ss_pred             CCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccccCCCCCCCEEEccCCccc
Q 048732          100 FQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       100 l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      +++|+.|++.+|.+....+... .....+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~l-a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMF-LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHH-HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHH-HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4556666666555543222110 0012456677777777766543    3333345566777777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.21  E-value=0.0001  Score=54.09  Aligned_cols=91  Identities=9%  Similarity=0.097  Sum_probs=46.8

Q ss_pred             CcEEEEEcCCC-CCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----ccc
Q 048732           73 GRVIKLDLAFR-KRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFS  147 (174)
Q Consensus        73 ~~v~~L~L~~n-~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~  147 (174)
                      ..+++|+|++| ++.........+.+..=+.|+.|+|++|.+...--......+..-+.|++|+|+.|.|+..    +-+
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            46777777764 4432111111223344566777777777765221111112244556677777777777532    223


Q ss_pred             ccCCCCCCCEEEccCC
Q 048732          148 SLGGLSSLKHLSLGTN  163 (174)
Q Consensus       148 ~l~~l~~L~~L~Ls~N  163 (174)
                      .+..-+.|+.|+|++|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            3444456777777644

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.83  E-value=0.0048  Score=49.83  Aligned_cols=68  Identities=12%  Similarity=0.186  Sum_probs=38.8

Q ss_pred             cCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732           92 MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus        92 ~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      +....|..+++|+.+++.. .+. .++...   |.++++|+.+++..| ++..-+..|.++ +|+.+++++|.+.
T Consensus       291 I~~~aF~~c~~L~~l~l~~-~i~-~I~~~a---F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          291 IHPYCLEGCPKLARFEIPE-SIR-ILGQGL---LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             ECTTTTTTCTTCCEECCCT-TCC-EECTTT---TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             ECHHHhhCCccCCeEEeCC-ceE-EEhhhh---hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            3344555556666666552 243 333322   666677777777544 443334567777 7777777777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.78  E-value=0.0027  Score=51.26  Aligned_cols=69  Identities=14%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             ccCcccccCCCCCCEEeCcCCccc----cccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCC
Q 048732           91 YMNASLFTPFQQLEFLDLSGNNIT----GCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTN  163 (174)
Q Consensus        91 ~~~~~~~~~l~~L~~L~ls~N~l~----g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N  163 (174)
                      .+....|..+++|+.+++.+|.+.    ..++...   |.++++|+.+++. +.++..-...|.++++|+.++|..|
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a---F~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC---LEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT---TTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHH---hhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence            455667888888999888887664    1244433   8888899999988 4576444557888899999988655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.56  E-value=0.0005  Score=54.95  Aligned_cols=41  Identities=20%  Similarity=0.308  Sum_probs=27.6

Q ss_pred             CCCCCCEEeccCCCCCCcccccc---CCCCCCCEEEccCCcccc
Q 048732          127 SLKNLKFLDLTLNHFNNSIFSSL---GGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       127 ~l~~L~~L~ls~N~l~g~~p~~l---~~l~~L~~L~Ls~N~l~g  167 (174)
                      .+++|++|+|.+|.++...+..+   ..+++|++|+|+.|.+++
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            46778888888777764333322   346778888888887764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.40  E-value=0.0085  Score=47.82  Aligned_cols=79  Identities=14%  Similarity=0.220  Sum_probs=55.3

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.+.+..+ +.    .+....|..+++|+.+++..+ ++ .++..+   |.++.+|+.+++..| ++..-...|.+++
T Consensus       298 ~L~~i~l~~~-i~----~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~a---F~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          298 SLTEVKLLDS-VK----FIGEEAFESCTSLVSIDLPYL-VE-EIGKRS---FRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             TCCEEEECTT-CC----EECTTTTTTCTTCCEECCCTT-CC-EECTTT---TTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             cccccccccc-cc----eechhhhcCCCCCCEEEeCCc-cc-EEhHHh---ccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence            4555555443 33    455667888888999988754 44 454433   888999999999876 6634455788999


Q ss_pred             CCCEEEccCC
Q 048732          154 SLKHLSLGTN  163 (174)
Q Consensus       154 ~L~~L~Ls~N  163 (174)
                      +|+.+++..+
T Consensus       367 ~L~~i~lp~~  376 (394)
T 4fs7_A          367 NLKKVELPKR  376 (394)
T ss_dssp             TCCEEEEEGG
T ss_pred             CCCEEEECCC
Confidence            9999988765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.28  E-value=0.0041  Score=42.26  Aligned_cols=37  Identities=16%  Similarity=0.139  Sum_probs=24.1

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccc
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNIT  114 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~  114 (174)
                      .++.|+|++|++.    .+++..|..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~----~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLT----ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCS----SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCC----ccChhhhhhccccCEEEecCCCee
Confidence            4666777776665    455666666666777777766654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.26  E-value=0.0022  Score=46.16  Aligned_cols=62  Identities=15%  Similarity=0.269  Sum_probs=45.8

Q ss_pred             CCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCC-CCCccccccCCC----CCCCEEEccCCc-cc
Q 048732          101 QQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNH-FNNSIFSSLGGL----SSLKHLSLGTNE-LN  166 (174)
Q Consensus       101 ~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~-l~g~~p~~l~~l----~~L~~L~Ls~N~-l~  166 (174)
                      -+|+.||++++.++..-    ...+..+++|+.|+|+++. ++..--..+..+    ++|++|+|+++. +|
T Consensus        61 ~~L~~LDLs~~~Itd~G----L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIG----FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCCGGG----GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHHH----HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            46999999999876332    2227899999999999985 664433345554    479999999984 65

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.10  E-value=0.0024  Score=46.78  Aligned_cols=71  Identities=13%  Similarity=0.136  Sum_probs=50.6

Q ss_pred             ccCCCCCCEEeCcCC-ccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccccCCCCCCCEEEccCCcccc
Q 048732           97 FTPFQQLEFLDLSGN-NITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus        97 ~~~l~~L~~L~ls~N-~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      +.+-+.|++|+|++| .+...--......+..-..|+.|+|++|++...    +-..+..-+.|+.|+|+.|.|+.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            445678999999986 664221011123377888999999999999633    33445556889999999999873

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.94  E-value=0.034  Score=44.29  Aligned_cols=67  Identities=13%  Similarity=0.266  Sum_probs=44.5

Q ss_pred             cCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCc
Q 048732           92 MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNE  164 (174)
Q Consensus        92 ~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~  164 (174)
                      +....|..+.+|+.+++..+ ++ .+...+   |.++.+|+.+.+..+ ++..-...|.++++|+.+++.+|.
T Consensus       302 I~~~aF~~c~~L~~i~lp~~-v~-~I~~~a---F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          302 LPESVFAGCISLKSIDIPEG-IT-QILDDA---FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CC-EECTTT---TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             cCceeecCCCCcCEEEeCCc-cc-EehHhH---hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            44556677777777777654 33 343333   778888888888654 553334578888888888887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.91  E-value=0.016  Score=45.72  Aligned_cols=66  Identities=11%  Similarity=0.090  Sum_probs=41.5

Q ss_pred             CcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCC
Q 048732           93 NASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTN  163 (174)
Q Consensus        93 ~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N  163 (174)
                      ....|..+++|+.+.+.++.++ .++...   |.++.+|+.+++..+ ++.+-..+|.++++|+.+.+..+
T Consensus       278 ~~~aF~~c~~L~~i~l~~~~i~-~I~~~a---F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          278 PYLLCSGCSNLTKVVMDNSAIE-TLEPRV---FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CTTTTTTCTTCCEEEECCTTCC-EECTTT---TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccccccccccccccccc-eehhhh---hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            3445667777777777776665 344333   777777887777654 44223346777777777766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.83  E-value=0.11  Score=40.92  Aligned_cols=67  Identities=15%  Similarity=0.086  Sum_probs=49.3

Q ss_pred             cCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCC
Q 048732           92 MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTN  163 (174)
Q Consensus        92 ~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N  163 (174)
                      +....|..+..|+.+.+..+ +. .++...   |.++.+|+.+++..+.++..-...|.++++|+.+.|..+
T Consensus       254 I~~~aF~~~~~l~~i~l~~~-i~-~i~~~a---F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          254 IGSFLLQNCTALKTLNFYAK-VK-TVPYLL---CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCC-CS-EECTTT---TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             eCccccceeehhcccccccc-ce-eccccc---cccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            44455677777888877654 33 344433   889999999999988888444568999999999999755

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.53  E-value=0.15  Score=40.50  Aligned_cols=66  Identities=15%  Similarity=0.286  Sum_probs=47.2

Q ss_pred             cCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCC
Q 048732           92 MNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTN  163 (174)
Q Consensus        92 ~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N  163 (174)
                      +....|.+++.|+.+.+.. .++ .++...   |.++.+|+.+++..+ ++.+-...|.++++|+.+.+..+
T Consensus       279 I~~~aF~~c~~L~~i~l~~-~i~-~I~~~a---F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s  344 (394)
T 4gt6_A          279 IGTGAFMNCPALQDIEFSS-RIT-ELPESV---FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS  344 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCT-TCC-EECTTT---TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred             ecCcccccccccccccCCC-ccc-ccCcee---ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence            4445577778888888853 344 455544   888999999999865 55334567889999999998654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.07  E-value=0.45  Score=37.68  Aligned_cols=64  Identities=19%  Similarity=0.219  Sum_probs=46.2

Q ss_pred             cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCC
Q 048732           94 ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTN  163 (174)
Q Consensus        94 ~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N  163 (174)
                      ...|..+.+|+.+.+..+ ++ .++...   |.++.+|+.+++..+ ++..-...|.++++|+.+++..|
T Consensus       290 ~~~F~~~~~L~~i~l~~~-i~-~I~~~a---F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLDS-VK-FIGEEA---FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CC-EECTTT---TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccccccccccc-cc-eechhh---hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            344666778888887655 43 344433   889999999999754 66333568899999999999766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 3e-08
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 27 CLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQ--WEGVECNNTTG--RVIKLDL 80
          C  Q++ ALLQ+K    +   L  W      +DCC   W GV C+  T   RV  LDL
Sbjct: 3  CNPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDL 57

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 8e-04
 Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 5/117 (4%)

Query: 47  HLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFL 106
               + +            +E + +       +             +       + L  L
Sbjct: 190 IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249

Query: 107 DLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTN 163
           DL  N I G +       L+ LK L  L+++ N+    I    G L      +   N
Sbjct: 250 DLRNNRIYGTLPQG----LTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANN 301

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 90  WYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSL 149
              + S  +  + L +L L  NNI+       +  +SSL  L+ L    N    S  SSL
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISD------ISPVSSLTKLQRLFFANNKV--SDVSSL 347

Query: 150 GGLSSLKHLSLGTNELNGSIDIEG 173
             L+++  LS G N+++    +  
Sbjct: 348 ANLTNINWLSAGHNQISDLTPLAN 371

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 14/145 (9%)

Query: 19  VKGWWSEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKL 78
           +        L +     L      N S             +  Q E +   +    +  L
Sbjct: 253 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 79  DLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTL 138
            L F               +   +L+ L  + N ++       +  L++L N+ +L    
Sbjct: 313 TLYFNNISDISP------VSSLTKLQRLFFANNKVSD------VSSLANLTNINWLSAGH 360

Query: 139 NHFNNSIFSSLGGLSSLKHLSLGTN 163
           N  ++     L  L+ +  L L   
Sbjct: 361 NQISDLT--PLANLTRITQLGLNDQ 383

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 6e-05
 Identities = 20/153 (13%), Positives = 42/153 (27%), Gaps = 5/153 (3%)

Query: 22  WWSEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLA 81
                  ++    L +            +       + CC             +      
Sbjct: 290 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 349

Query: 82  FRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHF 141
            R  D+    +   L  P   L  L L+  +++    +     L +  +L+ LDL+ N  
Sbjct: 350 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 142 NNSIFSSLGG-----LSSLKHLSLGTNELNGSI 169
            ++    L          L+ L L     +  +
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 7e-04
 Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 3/91 (3%)

Query: 77  KLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDL 136
            LD+   +   A W   A L    QQ + + L    +T     +    L     L  L+L
Sbjct: 6   SLDIQCEELSDARW---AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 137 TLNHFNNSIFSSLGGLSSLKHLSLGTNELNG 167
             N   +     +          +    L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (78), Expect = 0.004
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 103 LEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNN----SIFSSLGGLSSLKHL 158
           ++ LD+    ++        + L  L+  + + L            I S+L    +L  L
Sbjct: 4   IQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 159 SLGTNELNGS 168
           +L +NEL   
Sbjct: 61  NLRSNELGDV 70

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 9e-05
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 103 LEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGT 162
              LDL  N IT     +      +LKNL  L L  N  +     +   L  L+ L L  
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 163 NEL 165
           N+L
Sbjct: 89  NQL 91

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 40  HFFNDSKHLHYWNDGENYSDCCQWEGVECNNTTGRVIKLDLAFRKRDSAEWYMNASL--F 97
              +   +     +G  +    +   +  N  T   +   L      S E    + +   
Sbjct: 115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL 174

Query: 98  TPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDL 136
               +L+ L LS N+I+       L  L+ LKNL  L+L
Sbjct: 175 AGLTKLQNLYLSKNHIS------DLRALAGLKNLDVLEL 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 19/153 (12%), Positives = 39/153 (25%), Gaps = 8/153 (5%)

Query: 8   WVSELIFILLAVKGWWSEGCLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCCQWEGVE 67
            +  L  I            +                ++           +    +  + 
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 68  CNNTTGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSS 127
                  +  L              + +      +L  L    N I+       +  L+S
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD------ISPLAS 193

Query: 128 LKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL 160
           L NL  + L  N  ++   S L   S+L  ++L
Sbjct: 194 LPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.3
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.23
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.22
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.21
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.16
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.15
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.15
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.12
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.12
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.11
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.99
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.8
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.56
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.55
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.45
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.38
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.31
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.22
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.07
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.87
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.85
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.74
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.74
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.73
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.26

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=4.4e-25  Score=171.82  Aligned_cols=135  Identities=30%  Similarity=0.546  Sum_probs=107.7

Q ss_pred             CCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCc--cccceEecCC--CCcEEEEEcCCCCCCCCccccCcccccCCCC
Q 048732           27 CLEQERSALLQLKHFFNDSKHLHYWNDGENYSDCC--QWEGVECNNT--TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQ  102 (174)
Q Consensus        27 ~~~~~~~~L~~~~~~~~~~~~~~~W~~~~~~~~~C--~w~gv~c~~~--~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~  102 (174)
                      |.++|++||++||+.+.++..+.+|..+   ++||  .|.||+|+..  ..+|++|+|+++++. |...+ |+.+++|++
T Consensus         3 c~~~e~~aLl~~k~~~~~~~~l~sW~~~---~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~-g~~~l-p~~l~~L~~   77 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP-KPYPI-PSSLANLPY   77 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGTTCCTT---SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCS-SCEEC-CGGGGGCTT
T ss_pred             CCHHHHHHHHHHHHHCCCCCcCCCCCCC---CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCC-CCCCC-ChHHhcCcc
Confidence            7899999999999999988766999864   7899  5999999863  348999999999876 43233 556899999


Q ss_pred             CCEEeCcC-CccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732          103 LEFLDLSG-NNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       103 L~~L~ls~-N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      |++|++++ |++.|.+|..    ++++++|++|+|++|++++..|..+..+.+|+++++++|++.+.+|
T Consensus        78 L~~L~Ls~~N~l~g~iP~~----i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p  142 (313)
T d1ogqa_          78 LNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             CSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             ccccccccccccccccccc----cccccccchhhhccccccccccccccchhhhcccccccccccccCc
Confidence            99999996 8999999988    8899999999999988876666555555555555555555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=1.3e-15  Score=110.25  Aligned_cols=101  Identities=24%  Similarity=0.304  Sum_probs=83.3

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL  131 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L  131 (174)
                      |.+..|.|...         +..+++|+|++|++..   .+....|..+++|+.|++++|.+.+..+..    +..+++|
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~---~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~----~~~~~~L   80 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR---ISSDGLFGRLPHLVKLELKRNQLTGIEPNA----FEGASHI   80 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCS---BCCSCSGGGCTTCCEEECCSSCCCCBCTTT----TTTCTTC
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcc---cccccccCCCceEeeeeccccccccccccc----ccccccc
Confidence            77889999742         2478999999998861   134666888999999999999998766666    8889999


Q ss_pred             CEEeccCCCCCCccccccCCCCCCCEEEccCCccccc
Q 048732          132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGS  168 (174)
Q Consensus       132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~  168 (174)
                      ++|+|++|+++...|..|.++++|++|+|++|+|++.
T Consensus        81 ~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i  117 (192)
T d1w8aa_          81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             ceeeeccccccccCHHHHhCCCcccccccCCcccccc
Confidence            9999999999976677889999999999999999863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.43  E-value=2.4e-13  Score=98.07  Aligned_cols=89  Identities=25%  Similarity=0.304  Sum_probs=79.5

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      ..+++.|+|++|++.    .+++..|..+++|++|++++|++.+..|..    |.++++|++|+|++|+|++..|..|..
T Consensus        53 l~~L~~L~L~~N~i~----~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~----F~~l~~L~~L~L~~N~l~~i~~~~f~~  124 (192)
T d1w8aa_          53 LPHLVKLELKRNQLT----GIEPNAFEGASHIQELQLGENKIKEISNKM----FLGLHQLKTLNLYDNQISCVMPGSFEH  124 (192)
T ss_dssp             CTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSCCCCEECSSS----STTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred             CceEeeeeccccccc----cccccccccccccceeeeccccccccCHHH----HhCCCcccccccCCccccccCHHHhcC
Confidence            357999999999887    566788999999999999999999655655    999999999999999999777888999


Q ss_pred             CCCCCEEEccCCccccc
Q 048732          152 LSSLKHLSLGTNELNGS  168 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g~  168 (174)
                      +++|++|+|++|.+...
T Consensus       125 l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_         125 LNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CTTCCEEECTTCCBCCS
T ss_pred             Ccccccccccccccccc
Confidence            99999999999998754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-12  Score=91.59  Aligned_cols=96  Identities=17%  Similarity=0.195  Sum_probs=77.1

Q ss_pred             cccceEecCC-----------CCcEEEEEcCCCC-CCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCC
Q 048732           62 QWEGVECNNT-----------TGRVIKLDLAFRK-RDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLK  129 (174)
Q Consensus        62 ~w~gv~c~~~-----------~~~v~~L~L~~n~-~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~  129 (174)
                      .+.++.|...           ..++++|++++|+ +.    .+++..|..+++|+.|++++|+++...|..    |..++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~----~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~----f~~l~   80 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKSGLRFVAPDA----FHFTP   80 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC----EECGGGSCSCCCCSEEECCSSCCCEECTTG----GGSCS
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCcccc----ccCchhhccccccCcceeeccccCCccccc----ccccc
Confidence            4677888641           2478999998765 66    567788999999999999999999655555    99999


Q ss_pred             CCCEEeccCCCCCCccccccCCCCCCCEEEccCCccc
Q 048732          130 NLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       130 ~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      +|++|+|++|+++ .+|.......+|+.|+|++|.+.
T Consensus        81 ~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          81 RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            9999999999999 56554444457999999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.36  E-value=4.1e-13  Score=103.29  Aligned_cols=75  Identities=27%  Similarity=0.298  Sum_probs=59.3

Q ss_pred             cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCCCC
Q 048732           94 ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIEG  173 (174)
Q Consensus        94 ~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~~  173 (174)
                      +..+..++.++.+++++|.+.+.+|.     +..+++|+.|++++|+++|.+|+.|+++++|++|+|++|+|+|.||..+
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~~-----~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~  288 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             cccccccccccccccccccccccccc-----cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence            44566777888888888888776653     6778888888888888888888888888888888888888888888654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=1.4e-12  Score=88.01  Aligned_cols=84  Identities=26%  Similarity=0.285  Sum_probs=70.3

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcc-ccccCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSI-FSSLGG  151 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~-p~~l~~  151 (174)
                      ..+++|++++|++.    .++ +.+..+++|+.|++++|.++. +|.     +..+++|++|++++|+++... ...++.
T Consensus        20 ~~L~~L~ls~N~l~----~lp-~~~~~l~~L~~L~l~~N~i~~-l~~-----~~~l~~L~~L~l~~N~i~~~~~~~~l~~   88 (124)
T d1dcea3          20 LLVTHLDLSHNRLR----ALP-PALAALRCLEVLQASDNALEN-VDG-----VANLPRLQELLLCNNRLQQSAAIQPLVS   88 (124)
T ss_dssp             TTCCEEECCSSCCC----CCC-GGGGGCTTCCEEECCSSCCCC-CGG-----GTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred             CCCCEEECCCCccC----cch-hhhhhhhcccccccccccccc-cCc-----cccccccCeEECCCCccCCCCCchhhcC
Confidence            47899999999887    443 458899999999999999984 543     889999999999999998432 246888


Q ss_pred             CCCCCEEEccCCcccc
Q 048732          152 LSSLKHLSLGTNELNG  167 (174)
Q Consensus       152 l~~L~~L~Ls~N~l~g  167 (174)
                      +++|++|++++|+++.
T Consensus        89 ~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          89 CPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CTTCCEEECTTSGGGG
T ss_pred             CCCCCEEECCCCcCCc
Confidence            9999999999999984

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=4.6e-12  Score=85.33  Aligned_cols=80  Identities=24%  Similarity=0.326  Sum_probs=69.2

Q ss_pred             EEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCC
Q 048732           77 KLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLK  156 (174)
Q Consensus        77 ~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~  156 (174)
                      .|+|++|++.    .++  .+..+++|++|++++|.++ .+|+.    +..+++|++|++++|+++ .+| .+..+++|+
T Consensus         2 ~L~Ls~n~l~----~l~--~l~~l~~L~~L~ls~N~l~-~lp~~----~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~   68 (124)
T d1dcea3           2 VLHLAHKDLT----VLC--HLEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALE-NVD-GVANLPRLQ   68 (124)
T ss_dssp             EEECTTSCCS----SCC--CGGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCC-CCG-GGTTCSSCC
T ss_pred             EEEcCCCCCC----CCc--ccccCCCCCEEECCCCccC-cchhh----hhhhhccccccccccccc-ccC-ccccccccC
Confidence            5899999887    332  3789999999999999998 67876    889999999999999999 455 489999999


Q ss_pred             EEEccCCcccccCC
Q 048732          157 HLSLGTNELNGSID  170 (174)
Q Consensus       157 ~L~Ls~N~l~g~iP  170 (174)
                      +|++++|+|+. +|
T Consensus        69 ~L~l~~N~i~~-~~   81 (124)
T d1dcea3          69 ELLLCNNRLQQ-SA   81 (124)
T ss_dssp             EEECCSSCCCS-SS
T ss_pred             eEECCCCccCC-CC
Confidence            99999999984 44

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1e-11  Score=87.38  Aligned_cols=83  Identities=22%  Similarity=0.200  Sum_probs=50.0

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccc--cccC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIF--SSLG  150 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p--~~l~  150 (174)
                      .+++.|+|++|++.    .+  +.+..+++|++|++++|.++. +|+..   +..+++|+.|++++|+++ .++  ..+.
T Consensus        41 ~~L~~L~Ls~N~i~----~l--~~~~~l~~L~~L~ls~N~i~~-l~~~~---~~~l~~L~~L~L~~N~i~-~~~~l~~l~  109 (162)
T d1a9na_          41 DQFDAIDFSDNEIR----KL--DGFPLLRRLKTLLVNNNRICR-IGEGL---DQALPDLTELILTNNSLV-ELGDLDPLA  109 (162)
T ss_dssp             TCCSEEECCSSCCC----EE--CCCCCCSSCCEEECCSSCCCE-ECSCH---HHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred             ccCCEEECCCCCCC----cc--CCcccCcchhhhhcccccccC-CCccc---cccccccccceecccccc-ccccccccc
Confidence            35666666666655    33  125666667777777776663 33321   445667777777777766 333  2456


Q ss_pred             CCCCCCEEEccCCccc
Q 048732          151 GLSSLKHLSLGTNELN  166 (174)
Q Consensus       151 ~l~~L~~L~Ls~N~l~  166 (174)
                      .+++|++|++++|.++
T Consensus       110 ~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_         110 SLKSLTYLCILRNPVT  125 (162)
T ss_dssp             GCTTCCEEECCSSGGG
T ss_pred             cccccchhhcCCCccc
Confidence            6677777777777665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.2e-11  Score=93.73  Aligned_cols=86  Identities=23%  Similarity=0.220  Sum_probs=42.8

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .+..+++++|++.    .+++..|..+++|+.|++++|.+.+..+..    |.++++|+.+++++|++++..|..|..++
T Consensus       130 ~L~~l~l~~N~l~----~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~----f~~l~~L~~l~l~~N~l~~i~~~~f~~l~  201 (284)
T d1ozna_         130 ALQYLYLQDNALQ----ALPDDTFRDLGNLTHLFLHGNRISSVPERA----FRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (284)
T ss_dssp             TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             ccchhhhcccccc----ccChhHhccccchhhcccccCcccccchhh----hccccccchhhhhhccccccChhHhhhhh
Confidence            3455555555554    333444455555555555555554333333    44555555555555555544455555555


Q ss_pred             CCCEEEccCCcccc
Q 048732          154 SLKHLSLGTNELNG  167 (174)
Q Consensus       154 ~L~~L~Ls~N~l~g  167 (174)
                      +|++|++++|++++
T Consensus       202 ~L~~L~l~~N~i~~  215 (284)
T d1ozna_         202 RLMTLYLFANNLSA  215 (284)
T ss_dssp             TCCEEECCSSCCSC
T ss_pred             hccccccccccccc
Confidence            55555555555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2e-11  Score=92.49  Aligned_cols=88  Identities=22%  Similarity=0.202  Sum_probs=74.9

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|++.    .+++..|..+++|+.+++++|++++..|..    |..+++|++||+++|++++..|..|+.+
T Consensus       153 ~~L~~L~l~~N~l~----~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~i~~~~~~~~~~~  224 (284)
T d1ozna_         153 GNLTHLFLHGNRIS----SVPERAFRGLHSLDRLLLHQNRVAHVHPHA----FRDLGRLMTLYLFANNLSALPTEALAPL  224 (284)
T ss_dssp             TTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             cchhhcccccCccc----ccchhhhccccccchhhhhhccccccChhH----hhhhhhcccccccccccccccccccccc
Confidence            46888999998877    566778888999999999999998777776    8889999999999999988778888889


Q ss_pred             CCCCEEEccCCccccc
Q 048732          153 SSLKHLSLGTNELNGS  168 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~  168 (174)
                      ++|++|++++|++.+.
T Consensus       225 ~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         225 RALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TTCCEEECCSSCEECS
T ss_pred             cccCEEEecCCCCCCC
Confidence            9999999999988754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=9.5e-11  Score=88.09  Aligned_cols=46  Identities=30%  Similarity=0.341  Sum_probs=25.0

Q ss_pred             cCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCC
Q 048732          125 LSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDI  171 (174)
Q Consensus       125 ~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~  171 (174)
                      +..+++|+.+++++|++++..+..|..+++|++|+|++|+|+ .||.
T Consensus       144 ~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~  189 (266)
T d1p9ag_         144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK  189 (266)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             ccccccchhcccccccccccCccccccccccceeecccCCCc-ccCh
Confidence            444555555555555555444445555555555555555555 4543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8e-11  Score=88.49  Aligned_cols=85  Identities=29%  Similarity=0.266  Sum_probs=74.2

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .++..+++++|.+.    .+++..+..++.++.+++++|++++..+..    |..+++|++|+|++|+|+ .+|+.+..+
T Consensus       124 ~~l~~L~l~~n~l~----~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~L~-~lp~~~~~~  194 (266)
T d1p9ag_         124 GELQELYLKGNELK----TLPPGLLTPTPKLEKLSLANNNLTELPAGL----LNGLENLDTLLLQENSLY-TIPKGFFGS  194 (266)
T ss_dssp             TTCCEEECTTSCCC----CCCTTTTTTCTTCCEEECTTSCCSCCCTTT----TTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             cccccccccccccc----eeccccccccccchhcccccccccccCccc----cccccccceeecccCCCc-ccChhHCCC
Confidence            46778888888776    566777888999999999999999766665    899999999999999999 899999999


Q ss_pred             CCCCEEEccCCccc
Q 048732          153 SSLKHLSLGTNELN  166 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~  166 (174)
                      ++|+.|+|++|.+.
T Consensus       195 ~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         195 HLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCSEEECCSCCBC
T ss_pred             CCCCEEEecCCCCC
Confidence            99999999999865

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.15  E-value=6.1e-11  Score=90.45  Aligned_cols=85  Identities=21%  Similarity=0.235  Sum_probs=54.6

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .+++.|++++|...    ...+..|..++.++.|++++|.+.+..+..    +..+++|++|+|++|+++ .+|..|..+
T Consensus       171 ~~L~~L~l~~n~~~----~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~----~~~l~~L~~L~L~~N~L~-~lp~~l~~l  241 (305)
T d1xkua_         171 PSLTELHLDGNKIT----KVDAASLKGLNNLAKLGLSFNSISAVDNGS----LANTPHLRELHLNNNKLV-KVPGGLADH  241 (305)
T ss_dssp             TTCSEEECTTSCCC----EECTGGGTTCTTCCEEECCSSCCCEECTTT----GGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             CccCEEECCCCcCC----CCChhHhhcccccccccccccccccccccc----ccccccceeeeccccccc-ccccccccc
Confidence            35666666666554    233455666667777777777666544444    666677777777777776 556666667


Q ss_pred             CCCCEEEccCCccc
Q 048732          153 SSLKHLSLGTNELN  166 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~  166 (174)
                      ++|++|+|++|+|+
T Consensus       242 ~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         242 KYIQVVYLHNNNIS  255 (305)
T ss_dssp             SSCCEEECCSSCCC
T ss_pred             cCCCEEECCCCccC
Confidence            77777777777766

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.12  E-value=2.1e-10  Score=87.34  Aligned_cols=96  Identities=23%  Similarity=0.330  Sum_probs=79.3

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL  131 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L  131 (174)
                      |.|.+|.|.+.         +..++.|+|++|++.    .+++..|.++++|++|++++|.+....|..    |..+++|
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~----~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~----f~~l~~L   81 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGA----FAPLVKL   81 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCTTC
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCC----CcChhHhhccccccccccccccccccchhh----hhCCCcc
Confidence            78999999751         356899999999887    676777899999999999999998655666    8899999


Q ss_pred             CEEeccCCCCCCccccccCCCCCCCEEEccCCcccc
Q 048732          132 KFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       132 ~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      ++|++++|+++ .+|..+  ...++.|++.+|.+.+
T Consensus        82 ~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~  114 (305)
T d1xkua_          82 ERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITK  114 (305)
T ss_dssp             CEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCB
T ss_pred             CEecccCCccC-cCccch--hhhhhhhhccccchhh
Confidence            99999999998 566543  3578899999998875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.5e-10  Score=80.68  Aligned_cols=87  Identities=15%  Similarity=0.090  Sum_probs=70.4

Q ss_pred             EEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCc-cccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCC
Q 048732           76 IKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNN-ITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSS  154 (174)
Q Consensus        76 ~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~  154 (174)
                      +.++.+++++.    .. +..+..+++|++|++++|+ ++ .++...   |.++++|+.|++++|+++...|..|..+++
T Consensus        11 ~~l~c~~~~~~----~~-p~~l~~l~~l~~L~l~~n~~l~-~i~~~~---f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3          11 SGLRCTRDGAL----DS-LHHLPGAENLTELYIENQQHLQ-HLELRD---LRGLGELRNLTIVKSGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             SCEECCSSCCC----TT-TTTSCSCSCCSEEECCSCSSCC-EECGGG---SCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             CeEEecCCCCc----cC-cccccCccccCeeecCCCcccc-ccCchh---hccccccCcceeeccccCCccccccccccc
Confidence            34788877665    22 4457889999999998775 77 455433   999999999999999999777888999999


Q ss_pred             CCEEEccCCcccccCCCC
Q 048732          155 LKHLSLGTNELNGSIDIE  172 (174)
Q Consensus       155 L~~L~Ls~N~l~g~iP~~  172 (174)
                      |++|+|++|+|+ .+|..
T Consensus        82 L~~L~Ls~N~l~-~l~~~   98 (156)
T d2ifga3          82 LSRLNLSFNALE-SLSWK   98 (156)
T ss_dssp             CCEEECCSSCCS-CCCST
T ss_pred             ccceeccCCCCc-ccChh
Confidence            999999999999 57653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5.6e-11  Score=83.43  Aligned_cols=83  Identities=27%  Similarity=0.214  Sum_probs=70.3

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..+++|+|++|++.    .+ +..+..+++|+.|++++|.++ .++.     +..+++|++|++++|+++...+..+..+
T Consensus        18 ~~lr~L~L~~n~I~----~i-~~~~~~l~~L~~L~Ls~N~i~-~l~~-----~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          18 VRDRELDLRGYKIP----VI-ENLGATLDQFDAIDFSDNEIR-KLDG-----FPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             TSCEEEECTTSCCC----SC-CCGGGGTTCCSEEECCSSCCC-EECC-----CCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             CcCcEEECCCCCCC----cc-CccccccccCCEEECCCCCCC-ccCC-----cccCcchhhhhcccccccCCCccccccc
Confidence            46899999999887    44 455678999999999999998 4543     8899999999999999995444456789


Q ss_pred             CCCCEEEccCCccc
Q 048732          153 SSLKHLSLGTNELN  166 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~  166 (174)
                      ++|+.|++++|+|+
T Consensus        87 ~~L~~L~L~~N~i~  100 (162)
T d1a9na_          87 PDLTELILTNNSLV  100 (162)
T ss_dssp             TTCCEEECCSCCCC
T ss_pred             cccccceecccccc
Confidence            99999999999987

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.9e-10  Score=82.46  Aligned_cols=100  Identities=18%  Similarity=0.320  Sum_probs=82.8

Q ss_pred             ccccceEecCC---------CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCC
Q 048732           61 CQWEGVECNNT---------TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNL  131 (174)
Q Consensus        61 C~w~gv~c~~~---------~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L  131 (174)
                      |....|.|...         +..+++|++++|++.    .+++..|.++++|++|++++|.+...++...   |..++++
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~----~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~---f~~l~~l   80 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPKL   80 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCC----EECTTTTTTCTTCCEEEEESCTTCCEECSSS---EESCTTC
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCC----ccChhHhhccchhhhhhhccccccceeeccc---ccccccc
Confidence            55667888631         246999999999987    6777789999999999999999987776543   7889999


Q ss_pred             CEEeccC-CCCCCccccccCCCCCCCEEEccCCcccc
Q 048732          132 KFLDLTL-NHFNNSIFSSLGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       132 ~~L~ls~-N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  167 (174)
                      +.+++.. |.+....+..|..+++|+++++++|.++.
T Consensus        81 ~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             CEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccccccccccccccccccccccccchhhhcc
Confidence            9998764 67886777889999999999999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.94  E-value=5.5e-10  Score=86.85  Aligned_cols=76  Identities=21%  Similarity=0.359  Sum_probs=44.0

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCC
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLS  153 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~  153 (174)
                      .++.+++++|++.    .+.  .+..+++|++|++++|.+++ ++ .    +.++++|++|++++|++++..|  +.+++
T Consensus       308 ~l~~L~ls~n~l~----~l~--~l~~l~~L~~L~L~~n~l~~-l~-~----l~~l~~L~~L~l~~N~l~~l~~--l~~l~  373 (384)
T d2omza2         308 NLTYLTLYFNNIS----DIS--PVSSLTKLQRLFFANNKVSD-VS-S----LANLTNINWLSAGHNQISDLTP--LANLT  373 (384)
T ss_dssp             TCSEEECCSSCCS----CCG--GGGGCTTCCEEECCSSCCCC-CG-G----GGGCTTCCEEECCSSCCCBCGG--GTTCT
T ss_pred             ccCeEECCCCCCC----CCc--ccccCCCCCEEECCCCCCCC-Ch-h----HcCCCCCCEEECCCCcCCCChh--hccCC
Confidence            4556666666554    121  14556666666666666653 33 2    5566666666666666664433  56666


Q ss_pred             CCCEEEccCC
Q 048732          154 SLKHLSLGTN  163 (174)
Q Consensus       154 ~L~~L~Ls~N  163 (174)
                      +|+.|+|++|
T Consensus       374 ~L~~L~L~~N  383 (384)
T d2omza2         374 RITQLGLNDQ  383 (384)
T ss_dssp             TCSEEECCCE
T ss_pred             CCCEeeCCCC
Confidence            6666666665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.80  E-value=7.5e-09  Score=80.21  Aligned_cols=83  Identities=19%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..+++|+++++++.    .+  +.+..+++|++|++++|++++ +|+     ++++++|++|++++|++++..|  ++.+
T Consensus        44 ~~l~~L~l~~~~I~----~l--~gl~~L~nL~~L~Ls~N~l~~-l~~-----l~~L~~L~~L~L~~n~i~~i~~--l~~l  109 (384)
T d2omza2          44 DQVTTLQADRLGIK----SI--DGVEYLNNLTQINFSNNQLTD-ITP-----LKNLTKLVDILMNNNQIADITP--LANL  109 (384)
T ss_dssp             TTCCEEECCSSCCC----CC--TTGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred             CCCCEEECCCCCCC----Cc--cccccCCCCCEEeCcCCcCCC-Ccc-----ccCCcccccccccccccccccc--cccc
Confidence            46899999999876    33  347789999999999999985 443     8899999999999999985433  8899


Q ss_pred             CCCCEEEccCCcccccC
Q 048732          153 SSLKHLSLGTNELNGSI  169 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~i  169 (174)
                      ++|+.|++++|.+++..
T Consensus       110 ~~L~~L~~~~~~~~~~~  126 (384)
T d2omza2         110 TNLTGLTLFNNQITDID  126 (384)
T ss_dssp             TTCCEEECCSSCCCCCG
T ss_pred             ccccccccccccccccc
Confidence            99999999999988643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.77  E-value=1.3e-08  Score=73.69  Aligned_cols=81  Identities=31%  Similarity=0.367  Sum_probs=49.1

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      .++++|++++|++.    .++  .+..+++|+.|++++|++++ +|.     +..+++|+.|++++|.+. .++ .+..+
T Consensus        68 ~~L~~L~L~~n~i~----~l~--~~~~l~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~l~~~~~~-~~~-~l~~l  133 (210)
T d1h6ta2          68 PNVTKLFLNGNKLT----DIK--PLANLKNLGWLFLDENKVKD-LSS-----LKDLKKLKSLSLEHNGIS-DIN-GLVHL  133 (210)
T ss_dssp             TTCCEEECCSSCCC----CCG--GGTTCTTCCEEECCSSCCCC-GGG-----GTTCTTCCEEECTTSCCC-CCG-GGGGC
T ss_pred             CCCCEEeCCCcccc----Ccc--ccccCccccccccccccccc-ccc-----cccccccccccccccccc-ccc-ccccc
Confidence            35666777766655    222  24566677777777776653 332     566667777777776665 232 35666


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++++.++++.|.+++
T Consensus       134 ~~l~~l~~~~n~l~~  148 (210)
T d1h6ta2         134 PQLESLYLGNNKITD  148 (210)
T ss_dssp             TTCCEEECCSSCCCC
T ss_pred             ccccccccccccccc
Confidence            667777777776653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.72  E-value=1.3e-08  Score=74.31  Aligned_cols=81  Identities=20%  Similarity=0.322  Sum_probs=45.4

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..+..+.++.+.+.    .  ...+..+++|+.|++++|.+....+      ++.+++|+.|++++|++++ +|. ++.+
T Consensus       129 ~~~~~l~~~~~~~~----~--~~~~~~~~~L~~L~l~~n~~~~~~~------l~~l~~L~~L~Ls~n~l~~-l~~-l~~l  194 (227)
T d1h6ua2         129 SNLQVLYLDLNQIT----N--ISPLAGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISD-ISP-LASL  194 (227)
T ss_dssp             TTCCEEECCSSCCC----C--CGGGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-CGG-GGGC
T ss_pred             cchhhhhchhhhhc----h--hhhhccccccccccccccccccchh------hcccccceecccCCCccCC-Chh-hcCC
Confidence            34555555555443    1  1124556666666666666553221      5566666666666666663 332 5666


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|++|+|++|++++
T Consensus       195 ~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         195 PNLIEVHLKNNQISD  209 (227)
T ss_dssp             TTCCEEECTTSCCCB
T ss_pred             CCCCEEECcCCcCCC
Confidence            666666666666663

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.71  E-value=2.4e-08  Score=71.52  Aligned_cols=81  Identities=20%  Similarity=0.336  Sum_probs=62.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|++.    .+.+  +..+++|++|++++|.+.. ++.     +..+++|+.|++++|.+...  ..+..+
T Consensus        62 ~nL~~L~Ls~N~l~----~~~~--l~~l~~L~~L~l~~n~~~~-~~~-----l~~l~~L~~L~l~~~~~~~~--~~~~~l  127 (199)
T d2omxa2          62 NNLTQINFSNNQLT----DITP--LKNLTKLVDILMNNNQIAD-ITP-----LANLTNLTGLTLFNNQITDI--DPLKNL  127 (199)
T ss_dssp             TTCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCC-CGG-----GTTCTTCSEEECCSSCCCCC--GGGTTC
T ss_pred             CCcCcCcccccccc----Cccc--ccCCccccccccccccccc-ccc-----cccccccccccccccccccc--cccchh
Confidence            57888888888776    2222  7788888999998888763 443     77888999999998888743  347788


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|+.|++++|++..
T Consensus       128 ~~L~~L~l~~n~l~~  142 (199)
T d2omxa2         128 TNLNRLELSSNTISD  142 (199)
T ss_dssp             TTCSEEECCSSCCCC
T ss_pred             hhhHHhhhhhhhhcc
Confidence            999999999998873

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.67  E-value=4.6e-08  Score=69.99  Aligned_cols=81  Identities=26%  Similarity=0.383  Sum_probs=61.1

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ..++.|++++|.+.    .++  .+..++.|+.|++++|.+....+      +..+++|+.|++++|++. .++ .+..+
T Consensus        84 ~~L~~L~l~~n~~~----~~~--~l~~l~~L~~L~l~~~~~~~~~~------~~~l~~L~~L~l~~n~l~-~~~-~l~~~  149 (199)
T d2omxa2          84 TKLVDILMNNNQIA----DIT--PLANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTIS-DIS-ALSGL  149 (199)
T ss_dssp             TTCCEEECCSSCCC----CCG--GGTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCC-CCG-GGTTC
T ss_pred             cccccccccccccc----ccc--ccccccccccccccccccccccc------cchhhhhHHhhhhhhhhc-ccc-ccccc
Confidence            46888888888665    222  36788888888888888764322      678888888888888887 344 47788


Q ss_pred             CCCCEEEccCCcccc
Q 048732          153 SSLKHLSLGTNELNG  167 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g  167 (174)
                      ++|+.|++++|++++
T Consensus       150 ~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         150 TSLQQLNFSSNQVTD  164 (199)
T ss_dssp             TTCSEEECCSSCCCC
T ss_pred             ccccccccccccccC
Confidence            888888888888875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.67  E-value=3.4e-08  Score=71.92  Aligned_cols=77  Identities=21%  Similarity=0.245  Sum_probs=63.3

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCC
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGG  151 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~  151 (174)
                      ..+++.+++++|.+.    .  ...+..+++|+.|++++|.+++ +++     ++.+++|++|++++|++++ ++. ++.
T Consensus       150 ~~~L~~L~l~~n~~~----~--~~~l~~l~~L~~L~Ls~n~l~~-l~~-----l~~l~~L~~L~Ls~N~lt~-i~~-l~~  215 (227)
T d1h6ua2         150 LTNLQYLSIGNAQVS----D--LTPLANLSKLTTLKADDNKISD-ISP-----LASLPNLIEVHLKNNQISD-VSP-LAN  215 (227)
T ss_dssp             CTTCCEEECCSSCCC----C--CGGGTTCTTCCEEECCSSCCCC-CGG-----GGGCTTCCEEECTTSCCCB-CGG-GTT
T ss_pred             ccccccccccccccc----c--chhhcccccceecccCCCccCC-Chh-----hcCCCCCCEEECcCCcCCC-Ccc-ccc
Confidence            356899999998765    1  1237889999999999999985 443     7789999999999999995 443 889


Q ss_pred             CCCCCEEEccC
Q 048732          152 LSSLKHLSLGT  162 (174)
Q Consensus       152 l~~L~~L~Ls~  162 (174)
                      +++|+.|++++
T Consensus       216 l~~L~~L~lsn  226 (227)
T d1h6ua2         216 TSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEEEEE
T ss_pred             CCCCCEEEeeC
Confidence            99999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.56  E-value=1e-07  Score=68.68  Aligned_cols=89  Identities=26%  Similarity=0.332  Sum_probs=61.3

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcch-----------------hhhcCCCCCCCEE
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEG-----------------LDRLSSLKNLKFL  134 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~-----------------~~~~~~l~~L~~L  134 (174)
                      ..+++.|++++|++.    .++  .+..+++|+.|++++|.+.. ++...                 ...+..+++|+.+
T Consensus        89 l~~L~~L~l~~n~i~----~l~--~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l  161 (210)
T d1h6ta2          89 LKNLGWLFLDENKVK----DLS--SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL  161 (210)
T ss_dssp             CTTCCEEECCSSCCC----CGG--GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             Ccccccccccccccc----ccc--cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            357888899888776    222  35666777777777665542 11100                 1125568889999


Q ss_pred             eccCCCCCCccccccCCCCCCCEEEccCCcccccCC
Q 048732          135 DLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       135 ~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      ++++|++++ ++. +..+++|+.|++++|+++. ||
T Consensus       162 ~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~-l~  194 (210)
T d1h6ta2         162 SLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LR  194 (210)
T ss_dssp             ECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CG
T ss_pred             ccccccccc-ccc-ccCCCCCCEEECCCCCCCC-Ch
Confidence            999999985 443 8889999999999999873 55

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.55  E-value=2.6e-10  Score=82.47  Aligned_cols=90  Identities=23%  Similarity=0.300  Sum_probs=61.5

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcch------------------hhhcCCCCCCCEE
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEG------------------LDRLSSLKNLKFL  134 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~------------------~~~~~~l~~L~~L  134 (174)
                      ..++.|+|++|++.    .++  .+..+++|+.|++++|.++ .+|...                  ...+..+++|+.|
T Consensus        48 ~~L~~L~Ls~n~I~----~i~--~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L  120 (198)
T d1m9la_          48 KACKHLALSTNNIE----KIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL  120 (198)
T ss_dssp             TTCCEEECSEEEES----CCC--CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEE
T ss_pred             cccceeECcccCCC----Ccc--cccCCccccChhhcccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            46778888888765    332  3667777888888887776 344320                  1224566788888


Q ss_pred             eccCCCCCCccc--cccCCCCCCCEEEccCCcccccCC
Q 048732          135 DLTLNHFNNSIF--SSLGGLSSLKHLSLGTNELNGSID  170 (174)
Q Consensus       135 ~ls~N~l~g~~p--~~l~~l~~L~~L~Ls~N~l~g~iP  170 (174)
                      ++++|+++ .++  ..+..+++|+.|++++|+++...+
T Consensus       121 ~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         121 YMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             EESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             ccccchhc-cccccccccCCCccceeecCCCccccCcc
Confidence            88888887 343  457888889999998888775443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.45  E-value=7.9e-10  Score=79.82  Aligned_cols=60  Identities=30%  Similarity=0.368  Sum_probs=42.9

Q ss_pred             ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccc----------cCCCCCCCEEE
Q 048732           97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSS----------LGGLSSLKHLS  159 (174)
Q Consensus        97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~----------l~~l~~L~~L~  159 (174)
                      +..+++|+.|++++|.++. ++.  ...+..+++|+.|++++|.++...+..          +..+++|+.||
T Consensus       111 ~~~l~~L~~L~L~~N~i~~-~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITN-WGE--IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHSSEEEESEEECCC-HHH--HHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccccchhcc-ccc--cccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            4456677788888877763 221  122889999999999999987544432          45789999987

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.38  E-value=9.2e-07  Score=67.04  Aligned_cols=78  Identities=22%  Similarity=0.243  Sum_probs=51.8

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGL  152 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l  152 (174)
                      ++++.|++++|++.    .++ +.   +.+|+.|++++|+++ .++.     +  .+.|++|++++|.++ .+|. ++.+
T Consensus        58 ~~L~~L~Ls~N~l~----~lp-~~---~~~L~~L~l~~n~l~-~l~~-----l--p~~L~~L~L~~n~l~-~lp~-~~~l  119 (353)
T d1jl5a_          58 PHLESLVASCNSLT----ELP-EL---PQSLKSLLVDNNNLK-ALSD-----L--PPLLEYLGVSNNQLE-KLPE-LQNS  119 (353)
T ss_dssp             TTCSEEECCSSCCS----SCC-CC---CTTCCEEECCSSCCS-CCCS-----C--CTTCCEEECCSSCCS-SCCC-CTTC
T ss_pred             CCCCEEECCCCCCc----ccc-cc---hhhhhhhhhhhcccc-hhhh-----h--ccccccccccccccc-cccc-hhhh
Confidence            45677777777665    332 21   356677777777665 3332     1  245888888888887 5664 5778


Q ss_pred             CCCCEEEccCCccccc
Q 048732          153 SSLKHLSLGTNELNGS  168 (174)
Q Consensus       153 ~~L~~L~Ls~N~l~g~  168 (174)
                      ++|+.|++++|.+++.
T Consensus       120 ~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         120 SFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             TTCCEEECCSSCCSCC
T ss_pred             ccceeecccccccccc
Confidence            8899999888887743

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.31  E-value=1.4e-06  Score=65.93  Aligned_cols=62  Identities=23%  Similarity=0.184  Sum_probs=51.3

Q ss_pred             cCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEccCCcccccCCCC
Q 048732           98 TPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSLGTNELNGSIDIE  172 (174)
Q Consensus        98 ~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~iP~~  172 (174)
                      ..+++|++|++++|.++ .+|.       .+++|+.|++++|+++ .+|..   +++|++|++++|+++ .+|..
T Consensus       281 ~~~~~L~~L~Ls~N~l~-~lp~-------~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~  342 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKLI-ELPA-------LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI  342 (353)
T ss_dssp             CCCTTCCEEECCSSCCS-CCCC-------CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC
T ss_pred             ccCCCCCEEECCCCccC-cccc-------ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcc
Confidence            34678999999999998 5775       3678999999999998 67753   468999999999998 67753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=7.2e-07  Score=64.93  Aligned_cols=36  Identities=17%  Similarity=0.158  Sum_probs=15.4

Q ss_pred             cCCCCCCCEEeccCCCCCCccccccCCCCCCCEEEc
Q 048732          125 LSSLKNLKFLDLTLNHFNNSIFSSLGGLSSLKHLSL  160 (174)
Q Consensus       125 ~~~l~~L~~L~ls~N~l~g~~p~~l~~l~~L~~L~L  160 (174)
                      |.++++|++|++++|+++...+..|.++++|+.+++
T Consensus       197 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             hcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            444555555555555554222223444444444333

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.7e-07  Score=65.06  Aligned_cols=79  Identities=19%  Similarity=0.213  Sum_probs=41.2

Q ss_pred             CcEEEEEcCCCCCCCCccccC--cccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCcccc---
Q 048732           73 GRVIKLDLAFRKRDSAEWYMN--ASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS---  147 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~--~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~---  147 (174)
                      ..++.|+|++|++.    .+.  +..+..+++|+.|++++|.++. +++..   +....+|+.|++++|.++.....   
T Consensus        65 ~~L~~L~Ls~N~i~----~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~---~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          65 PELLSLNLSNNRLY----RLDDMSSIVQKAPNLKILNLSGNELKS-ERELD---KIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             TTCCCCCCCSSCCC----CCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHH---HHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             CCCCEeeCCCcccc----CCchhHHHHhhCCcccccccccCcccc-chhhh---hhhccccceeecCCCCcCcCcccchh
Confidence            35666666666665    121  2224456666666666666652 33210   22233566666666666544332   


Q ss_pred             ----ccCCCCCCCEEE
Q 048732          148 ----SLGGLSSLKHLS  159 (174)
Q Consensus       148 ----~l~~l~~L~~L~  159 (174)
                          .+..+++|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence                144566666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.4e-07  Score=65.46  Aligned_cols=68  Identities=24%  Similarity=0.199  Sum_probs=52.8

Q ss_pred             ccCCCCCCEEeCcCCccccc--cCcchhhhcCCCCCCCEEeccCCCCCCcccc-ccCCCCCCCEEEccCCcccccC
Q 048732           97 FTPFQQLEFLDLSGNNITGC--VQNEGLDRLSSLKNLKFLDLTLNHFNNSIFS-SLGGLSSLKHLSLGTNELNGSI  169 (174)
Q Consensus        97 ~~~l~~L~~L~ls~N~l~g~--~p~~~~~~~~~l~~L~~L~ls~N~l~g~~p~-~l~~l~~L~~L~Ls~N~l~g~i  169 (174)
                      +..++.|++|++++|+++..  ++..    +..+++|+.|++++|+++. +++ .+-...+|+.|++++|.++...
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~----~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTH----HHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHH----HhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCc
Confidence            45789999999999999853  2233    6679999999999999994 443 3334457999999999998643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.2e-07  Score=71.14  Aligned_cols=93  Identities=20%  Similarity=0.130  Sum_probs=60.1

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcC-CCCCCCEEeccCCCCCCc----cccc
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLS-SLKNLKFLDLTLNHFNNS----IFSS  148 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~-~l~~L~~L~ls~N~l~g~----~p~~  148 (174)
                      +++.|+|++|++....+......+..+++|++||+++|.++..--......+. ...+|++|++++|+++..    ++..
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~  107 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST  107 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccch
Confidence            45567777776542111111233567889999999999885210000011132 235799999999998744    4667


Q ss_pred             cCCCCCCCEEEccCCccc
Q 048732          149 LGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       149 l~~l~~L~~L~Ls~N~l~  166 (174)
                      +..+++|++|++++|.++
T Consensus       108 l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         108 LRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTSCTTCCEEECCSSBCH
T ss_pred             hhccccccccccccccch
Confidence            888899999999999876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.8e-07  Score=70.79  Aligned_cols=91  Identities=23%  Similarity=0.316  Sum_probs=64.7

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----ccccc
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSL  149 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l  149 (174)
                      .++.||+++|++.+..+   .+.+..+++++.|+|++|.++-.--......+..+++|+.|||++|.++..    +...+
T Consensus         3 ~l~~ld~~~~~i~~~~~---~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARW---AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESCCCCHHHH---HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeCCcCChHHH---HHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            68999999998874332   234567899999999999886221111112267899999999999998632    23333


Q ss_pred             CC-CCCCCEEEccCCcccc
Q 048732          150 GG-LSSLKHLSLGTNELNG  167 (174)
Q Consensus       150 ~~-l~~L~~L~Ls~N~l~g  167 (174)
                      .. .++|+.|++++|+++.
T Consensus        80 ~~~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBG
T ss_pred             hcCCCCCCEEECCCCCccc
Confidence            32 3579999999999874

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.87  E-value=2e-06  Score=59.67  Aligned_cols=67  Identities=12%  Similarity=0.179  Sum_probs=29.7

Q ss_pred             cCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cccccCCCCCCCEEEccCCc
Q 048732           98 TPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IFSSLGGLSSLKHLSLGTNE  164 (174)
Q Consensus        98 ~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~  164 (174)
                      ...+.|+.|++++|.+...........+...+.|+.|++++|.++..    +-..+..-++|++|++++|.
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            34455555555555554221111111133445555555555555422    11234444555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1e-06  Score=66.27  Aligned_cols=84  Identities=24%  Similarity=0.265  Sum_probs=59.0

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCC-CCCCc-cccccC
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLN-HFNNS-IFSSLG  150 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N-~l~g~-~p~~l~  150 (174)
                      .++++||++++.+....+   ...+..+++|++|+++++.++...+..    ++.+++|++|+++++ .++.. +.....
T Consensus        46 ~~L~~LdLs~~~i~~~~l---~~l~~~c~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~Ls~c~~itd~~l~~l~~  118 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTL---HGILSQCSKLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLLS  118 (284)
T ss_dssp             BCCCEEECTTCEECHHHH---HHHHTTBCCCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             CCCCEEECCCCccCHHHH---HHHHHhCCCcccccccccCCCcHHHHH----HhcCCCCcCccccccccccccccchhhH
Confidence            468889998876542211   334677889999999998887655555    778888999999884 56532 223345


Q ss_pred             CCCCCCEEEccCC
Q 048732          151 GLSSLKHLSLGTN  163 (174)
Q Consensus       151 ~l~~L~~L~Ls~N  163 (174)
                      .+++|++|+++++
T Consensus       119 ~~~~L~~L~ls~c  131 (284)
T d2astb2         119 SCSRLDELNLSWC  131 (284)
T ss_dssp             HCTTCCEEECCCC
T ss_pred             HHHhccccccccc
Confidence            6788888888874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.74  E-value=4.3e-06  Score=63.94  Aligned_cols=46  Identities=28%  Similarity=0.216  Sum_probs=19.7

Q ss_pred             ccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCC
Q 048732           97 FTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFN  142 (174)
Q Consensus        97 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~  142 (174)
                      +...++|+.|++++|.++..-.......+..+++|++|++++|.++
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            3445555555555555432110000111344455555555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.74  E-value=3e-06  Score=64.90  Aligned_cols=94  Identities=20%  Similarity=0.186  Sum_probs=59.7

Q ss_pred             cEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccC-cchhhhcCCCCCCCEEeccCCCCCCc----cccc
Q 048732           74 RVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQ-NEGLDRLSSLKNLKFLDLTLNHFNNS----IFSS  148 (174)
Q Consensus        74 ~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~~~~~l~~L~~L~ls~N~l~g~----~p~~  148 (174)
                      .++.+++++|++.......-...+...+.|+.|++++|.+...-. ......+...++|+.|++++|.++..    +...
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~  238 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  238 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             ccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc
Confidence            455555555544322111112224456789999999998863200 00011267789999999999998633    4456


Q ss_pred             cCCCCCCCEEEccCCcccc
Q 048732          149 LGGLSSLKHLSLGTNELNG  167 (174)
Q Consensus       149 l~~l~~L~~L~Ls~N~l~g  167 (174)
                      +...++|++|+|++|.|++
T Consensus       239 l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCH
T ss_pred             ccccccchhhhhhcCccCc
Confidence            7788899999999998864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=9.3e-06  Score=60.78  Aligned_cols=62  Identities=24%  Similarity=0.251  Sum_probs=45.4

Q ss_pred             cCCCCCCEEeCcCC-ccccccCcchhhhcCCCCCCCEEeccC-CCCCCccccccCCCCCCCEEEccCC
Q 048732           98 TPFQQLEFLDLSGN-NITGCVQNEGLDRLSSLKNLKFLDLTL-NHFNNSIFSSLGGLSSLKHLSLGTN  163 (174)
Q Consensus        98 ~~l~~L~~L~ls~N-~l~g~~p~~~~~~~~~l~~L~~L~ls~-N~l~g~~p~~l~~l~~L~~L~Ls~N  163 (174)
                      ..+++|++|++++| .+++.....    +.++++|++|++++ +.+++.....++++++|+.|+++++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~----l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQE----FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGG----GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhhh----hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            45678888888875 455444444    77788888888888 4677666666778888888888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.43  E-value=1.1e-05  Score=55.81  Aligned_cols=95  Identities=13%  Similarity=0.065  Sum_probs=65.2

Q ss_pred             CCcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc-------
Q 048732           72 TGRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS-------  144 (174)
Q Consensus        72 ~~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~-------  144 (174)
                      ...+++|+|++|.+.......-...+...+.|++|++++|.++..--......+...++|+.|++++|++...       
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            3578999999997753221111233456688999999999987432221234478889999999999976532       


Q ss_pred             cccccCCCCCCCEEEccCCccc
Q 048732          145 IFSSLGGLSSLKHLSLGTNELN  166 (174)
Q Consensus       145 ~p~~l~~l~~L~~L~Ls~N~l~  166 (174)
                      +...+..-++|+.|+++.+...
T Consensus       123 l~~~L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_         123 MMMAIEENESLLRVGISFASME  144 (167)
T ss_dssp             HHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhCCCccEeeCcCCCch
Confidence            3344556689999999877543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.90  E-value=0.00011  Score=50.27  Aligned_cols=92  Identities=17%  Similarity=0.151  Sum_probs=37.3

Q ss_pred             CcEEEEEcCCCCCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEec--cCCCCCC----ccc
Q 048732           73 GRVIKLDLAFRKRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDL--TLNHFNN----SIF  146 (174)
Q Consensus        73 ~~v~~L~L~~n~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~l--s~N~l~g----~~p  146 (174)
                      .++++|++++|.+...........+...+.++.+++++|.+...--......+...++|+.++|  +.|.+..    .+.
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La  125 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  125 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHH
Confidence            3455555555544311100001123334455555555555432211111122444555554333  3444432    122


Q ss_pred             cccCCCCCCCEEEccCCc
Q 048732          147 SSLGGLSSLKHLSLGTNE  164 (174)
Q Consensus       147 ~~l~~l~~L~~L~Ls~N~  164 (174)
                      +.+...++|+.|+++.++
T Consensus       126 ~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         126 NMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCCCcCEEeCcCCC
Confidence            334445556666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.26  E-value=0.00019  Score=49.02  Aligned_cols=95  Identities=16%  Similarity=0.131  Sum_probs=64.0

Q ss_pred             CCcEEEEEcCCC-CCCCCccccCcccccCCCCCCEEeCcCCccccccCcchhhhcCCCCCCCEEeccCCCCCCc----cc
Q 048732           72 TGRVIKLDLAFR-KRDSAEWYMNASLFTPFQQLEFLDLSGNNITGCVQNEGLDRLSSLKNLKFLDLTLNHFNNS----IF  146 (174)
Q Consensus        72 ~~~v~~L~L~~n-~~~~g~~~~~~~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~l~~L~~L~ls~N~l~g~----~p  146 (174)
                      .+.+++|+|+++ .+....+..-...+...++|++|++++|.++...-......+...++++.++++.|.++..    +-
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            367899999974 4542222111233567899999999999886442222233366789999999999998744    33


Q ss_pred             cccCCCCCCCEEEcc--CCccc
Q 048732          147 SSLGGLSSLKHLSLG--TNELN  166 (174)
Q Consensus       147 ~~l~~l~~L~~L~Ls--~N~l~  166 (174)
                      ..+...++|+.++|+  +|++.
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHhCccccEEeeccCCCcCc
Confidence            456777889987664  56654