Citrus Sinensis ID: 048738

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MNTESLLCDELWLSDPASTADCYSDKKPKQCNILESCECECDGTSFYKTKEECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRLVDPLSNLIVCGQPYSNWPSSPVTVLLRERIDIYDCQVDLSIFNQMQMQMPGSNIINNLESFKKRRKE
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHcHHHHHHHcccccHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHcEEEcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHccccccccEEEEcccccccccccccccccccccccccccccccccccHHHHccc
mntesllcdelwlsdpastadcysdkkpkqcnilescececdgtsfyktkEECEEAAIICLEKelsympepgyveyldqsnnlphfRFRAIQWLIKVPIPYVLISYSLhllfptnrvdikkSVYVTCVLSPAEWKYWMVELVSVACLSIAskfndtsspslheIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMksrlvdplsnlivcgqpysnwpsspvtVLLRERIDIYDCQVDLSIFNQMqmqmpgsniiNNLESFKKRRKE
mntesllcdelwlsdpastadcysdkKPKQCNILESCECECDGTSFYKTKEECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRLVDPLSNLIVCGQPYSNWPSSPVTVLLRERIDIYDCQVDLSIFNQmqmqmpgsniinnlesfkkrrke
MNTESLLCDELWLSDPASTADCYSDKKPKQCNILESCECECDGTSFYKTkeeceeaaiiclekelSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRLVDPLSNLIVCGQPYSNWPSSPVTVLLRERIDIYDCQVDLSIFNQMQMQMPGSNIINNLESFKKRRKE
*****LLCDELWLSDPASTADCYSDKKPKQCNILESCECECDGTSFYKTKEECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFN************EELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRLVDPLSNLIVCGQPYSNWPSSPVTVLLRERIDIYDCQVDLSIFNQMQ*********************
*NTESLLCDELWL********************LESCECECDGTSFYKTKEECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRL*********************VTVLLRERIDIYDC********************************
MNTESLLCDELWLSDPASTADCYSDKKPKQCNILESCECECDGTSFYKTKEECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRLVDPLSNLIVCGQPYSNWPSSPVTVLLRERIDIYDCQVDLSIFNQMQMQMPGSNIINNLESFKKRRKE
*************S*******************LESCECECDGTSFYKTKEECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRLVDPLSNLIVCGQPYSNWPSSPVTVLLRERIDI***********************************
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MNTESLLCDELWLSDPASTADCYSDKKPKQCNILESCECECDGTSFYKTKEECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRLVDPLSNLIVCGQPYSNWPSSPVTVLLRERIDIYDCQVDLSIFNQMQMQMPGSNIINNLESFKKRRKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query355 2.2.26 [Sep-21-2011]
Q9LZM0341 Putative cyclin-D7-1 OS=A yes no 0.760 0.791 0.329 8e-29
Q53MB7320 Putative cyclin-D7-1 OS=O no no 0.467 0.518 0.356 1e-18
Q8LHA8356 Cyclin-D2-2 OS=Oryza sati no no 0.690 0.688 0.289 4e-18
Q4KYM5383 Cyclin-D4-2 OS=Oryza sati no no 0.628 0.582 0.295 4e-16
Q6YXH8356 Cyclin-D4-1 OS=Oryza sati no no 0.447 0.446 0.323 5e-15
Q8H339354 Cyclin-D1-2 OS=Oryza sati no no 0.569 0.570 0.283 5e-15
Q0J233308 Cyclin-D2-1 OS=Oryza sati no no 0.543 0.626 0.269 6e-15
P42753376 Cyclin-D3-1 OS=Arabidopsi no no 0.430 0.406 0.335 9e-15
P42751339 Cyclin-D1-1 OS=Arabidopsi no no 0.630 0.660 0.272 2e-14
Q8LGA1308 Cyclin-D4-1 OS=Arabidopsi no no 0.630 0.727 0.270 3e-14
>sp|Q9LZM0|CCD71_ARATH Putative cyclin-D7-1 OS=Arabidopsis thaliana GN=CYCD7-1 PE=3 SV=1 Back     alignment and function desciption
 Score =  128 bits (321), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 153/291 (52%), Gaps = 21/291 (7%)

Query: 4   ESLLCDELWLSDPASTADCYSDKKPKQCNILESCECECDGTSFYKTKEECEEAAIICLEK 63
           ++LLC+E W + P +     + +     N +     E D  +        EEA  + LEK
Sbjct: 2   DNLLCEESWPASPLTPEPLPNFRHRSHDNDVVKMYPEIDAATM-------EEAIAMDLEK 54

Query: 64  ELSYMPEPG-YVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDIKKS 122
           EL +      +VE+   S  L  +RF A QWLI+     + +SY   +    N  D  + 
Sbjct: 55  ELCFNNHGDKFVEFF-VSKKLTDYRFHAFQWLIQTR-SRLNLSYET-VFSAANCFD--RF 109

Query: 123 VYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRME 182
           VY+TC     EW  WMVELV+V  LSIASKFN+ ++P L E++ME L + F  +T+ +ME
Sbjct: 110 VYMTCC---DEWTNWMVELVAVTSLSIASKFNEVTTPLLEELEMEGLTHMFHVNTVAQME 166

Query: 183 LTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQPSVV 242
           L +L++L WR+  +T+Y++ + L++    +  H+     T H+     D ++L+Y PSVV
Sbjct: 167 LIILKALEWRVNAVTSYTFSQTLVSKIGMVGDHMIMNRITNHLLDVICDLKMLQYPPSVV 226

Query: 243 AVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRLVDPLS 293
           A +A+W  +++           I  LF Q  K+ +V+C   MK+R +D  S
Sbjct: 227 ATAAIWILMEDKVCRES-----IMNLFEQNHKEKIVKCVDGMKNRDIDHQS 272

Arabidopsis thaliana (taxid: 3702)
>sp|Q53MB7|CCD71_ORYSJ Putative cyclin-D7-1 OS=Oryza sativa subsp. japonica GN=CYCD7-1 PE=3 SV=1 Back     alignment and function description
>sp|Q8LHA8|CCD22_ORYSJ Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2 Back     alignment and function description
>sp|Q6YXH8|CCD41_ORYSJ Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2 Back     alignment and function description
>sp|Q8H339|CCD12_ORYSJ Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2 Back     alignment and function description
>sp|Q0J233|CCD21_ORYSJ Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2 Back     alignment and function description
>sp|P42753|CCD31_ARATH Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3 Back     alignment and function description
>sp|P42751|CCD11_ARATH Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3 Back     alignment and function description
>sp|Q8LGA1|CCD41_ARATH Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
255581492349 cyclin d, putative [Ricinus communis] gi 0.929 0.945 0.487 6e-79
224090773356 predicted protein [Populus trichocarpa] 0.923 0.921 0.486 3e-72
359359240356 D7-type cyclin [Populus x canadensis] 0.918 0.915 0.475 3e-71
359482094338 PREDICTED: putative cyclin-D7-1-like [Vi 0.915 0.961 0.439 1e-64
356494832289 PREDICTED: putative cyclin-D7-1-like [Gl 0.785 0.965 0.424 5e-48
356506716241 PREDICTED: putative cyclin-D7-1-like [Gl 0.611 0.900 0.414 3e-37
147816074206 hypothetical protein VITISV_003115 [Viti 0.478 0.825 0.448 2e-32
302798593338 hypothetical protein SELMODRAFT_420671 [ 0.667 0.701 0.332 2e-29
302801550338 hypothetical protein SELMODRAFT_421971 [ 0.667 0.701 0.328 6e-29
297806141341 CYCD7_1 [Arabidopsis lyrata subsp. lyrat 0.743 0.774 0.340 7e-28
>gi|255581492|ref|XP_002531552.1| cyclin d, putative [Ricinus communis] gi|223528813|gb|EEF30818.1| cyclin d, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  300 bits (769), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 177/363 (48%), Positives = 238/363 (65%), Gaps = 33/363 (9%)

Query: 4   ESLLCDELWLSDPASTADCYSDKKPKQCNILESCECECDGTSFYKTKEECEEAAIICLEK 63
           +S LCDE WL  P+STA  +  +     N+      +    SFY TKE+CE+A  +CLEK
Sbjct: 2   DSFLCDEEWLPSPSSTASGHCTQFQSNVNV------DSYDDSFYTTKEDCEQALSLCLEK 55

Query: 64  ELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLF-PTNRVDIKKS 122
           ELSYMP+ GY E+L QS NL   RF+A+QWLIK       ++ S   LF   N +D   S
Sbjct: 56  ELSYMPQQGYFEHL-QSKNLFFARFKAVQWLIK---SRSRLNLSFETLFNAANYLDRFIS 111

Query: 123 VYVTCVLSPAEWKYWMVELVSVACLSIASKFND-TSSPSLHEIQMEELDYSFQSSTIRRM 181
           +   C+    EWK WMVEL+SVACLS+ASKF++ T +PSL EIQME++D++FQS TI+RM
Sbjct: 112 LN-KCL----EWKNWMVELLSVACLSVASKFSESTYAPSLLEIQMEDMDHTFQSITIQRM 166

Query: 182 ELTLLQSLGWRLGCITTYSYVELLL----TNFDSLEFHLHNELTTLHINQ----TNADAR 233
           EL LLQ+LGWRLG  T YSYVEL++     N D L+ HL  +L    + +    T  D +
Sbjct: 167 ELMLLQALGWRLGSTTVYSYVELMMMMMVINNDFLKSHLRKDLIVARVTELILGTILDCK 226

Query: 234 LLKYQPSVVAVSALWCSLDELTAS-SCAHVAFITRLFNQEQKDDVVRCNMIMKSRLVDPL 292
             +++PS+ AVSA+WC L+EL  S +   + +IT   N++QKDD+V+C+ I++ +L+DPL
Sbjct: 227 FAEFRPSIAAVSAIWCGLEELIPSKTSTQLTYITGFLNKDQKDDIVKCHNILEQKLIDPL 286

Query: 293 SNLIVCGQPYSNWPSSPVTVLLRERIDIYDCQVDLSIFNQMQMQMPGSNIINNLESFKKR 352
           ++L  C +  S  PSSPVTVLL ERID+YDC VDLS+F     +MP SN  N LES  KR
Sbjct: 287 NDLAAC-ENSSYCPSSPVTVLLTERIDVYDCHVDLSLF-----KMPSSN-TNILESTNKR 339

Query: 353 RKE 355
           RK+
Sbjct: 340 RKQ 342

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224090773|ref|XP_002309075.1| predicted protein [Populus trichocarpa] gi|159025740|emb|CAN88869.1| D7-type cyclin [Populus trichocarpa] gi|222855051|gb|EEE92598.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359359240|gb|AEV41138.1| D7-type cyclin [Populus x canadensis] Back     alignment and taxonomy information
>gi|359482094|ref|XP_002271184.2| PREDICTED: putative cyclin-D7-1-like [Vitis vinifera] gi|297740336|emb|CBI30518.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356494832|ref|XP_003516287.1| PREDICTED: putative cyclin-D7-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356506716|ref|XP_003522122.1| PREDICTED: putative cyclin-D7-1-like [Glycine max] Back     alignment and taxonomy information
>gi|147816074|emb|CAN63930.1| hypothetical protein VITISV_003115 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302798593|ref|XP_002981056.1| hypothetical protein SELMODRAFT_420671 [Selaginella moellendorffii] gi|300151110|gb|EFJ17757.1| hypothetical protein SELMODRAFT_420671 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|302801550|ref|XP_002982531.1| hypothetical protein SELMODRAFT_421971 [Selaginella moellendorffii] gi|300149630|gb|EFJ16284.1| hypothetical protein SELMODRAFT_421971 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|297806141|ref|XP_002870954.1| CYCD7_1 [Arabidopsis lyrata subsp. lyrata] gi|297316791|gb|EFH47213.1| CYCD7_1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
TAIR|locus:2185178341 CYCD7;1 "AT5G02110" [Arabidops 0.588 0.612 0.360 5.6e-34
TAIR|locus:2020663339 CYCD1;1 "CYCLIN D1;1" [Arabido 0.588 0.616 0.291 4.3e-16
TAIR|locus:2124331376 CYCD3;1 "CYCLIN D3;1" [Arabido 0.450 0.425 0.327 3.4e-15
TAIR|locus:2157172367 CYCD3;2 "AT5G67260" [Arabidops 0.504 0.487 0.316 1.7e-14
TAIR|locus:2083128361 CYCD3;3 "AT3G50070" [Arabidops 0.549 0.540 0.293 2.6e-13
TAIR|locus:2142504298 CYCD4;2 "AT5G10440" [Arabidops 0.312 0.372 0.324 2.9e-11
UNIPROTKB|Q10QA2345 CYCD5-3 "Cyclin-D5-3" [Oryza s 0.402 0.414 0.277 3.4e-07
TAIR|locus:2120081323 CYCD5;1 "AT4G37630" [Arabidops 0.318 0.349 0.285 1.4e-06
TAIR|locus:2036756370 CYCA3;4 "CYCLIN A3;4" [Arabido 0.478 0.459 0.258 2.4e-06
TAIR|locus:2125522302 CYCD6;1 "AT4G03270" [Arabidops 0.411 0.483 0.257 3.4e-06
TAIR|locus:2185178 CYCD7;1 "AT5G02110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 344 (126.2 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
 Identities = 80/222 (36%), Positives = 127/222 (57%)

Query:    73 YVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDIKKSVYVTCVLSPA 132
             +VE+   S  L  +RF A QWLI+     + +SY   +    N  D  + VY+TC     
Sbjct:    65 FVEFF-VSKKLTDYRFHAFQWLIQTR-SRLNLSYET-VFSAANCFD--RFVYMTCC---D 116

Query:   133 EWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWR 192
             EW  WMVELV+V  LSIASKFN+ ++P L E++ME L + F  +T+ +MEL +L++L WR
Sbjct:   117 EWTNWMVELVAVTSLSIASKFNEVTTPLLEELEMEGLTHMFHVNTVAQMELIILKALEWR 176

Query:   193 LGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQPSVVAVSALWCSLD 252
             +  +T+Y++ + L++    +  H+     T H+     D ++L+Y PSVVA +A+W  ++
Sbjct:   177 VNAVTSYTFSQTLVSKIGMVGDHMIMNRITNHLLDVICDLKMLQYPPSVVATAAIWILME 236

Query:   253 ELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRLVDPLSN 294
             +     C     I  LF Q  K+ +V+C   MK+R +D  S+
Sbjct:   237 DKV---CRES--IMNLFEQNHKEKIVKCVDGMKNRDIDHQSS 273
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0051726 "regulation of cell cycle" evidence=ISS;IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009790 "embryo development" evidence=IMP
TAIR|locus:2020663 CYCD1;1 "CYCLIN D1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124331 CYCD3;1 "CYCLIN D3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157172 CYCD3;2 "AT5G67260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083128 CYCD3;3 "AT3G50070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142504 CYCD4;2 "AT5G10440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q10QA2 CYCD5-3 "Cyclin-D5-3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2120081 CYCD5;1 "AT4G37630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036756 CYCA3;4 "CYCLIN A3;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125522 CYCD6;1 "AT4G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 1e-11
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 0.001
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 13/134 (9%)

Query: 61  LEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDIK 120
            E E    P P Y     Q +  P  R   I WL++V   + L+  +L+L    N +D  
Sbjct: 7   RELEEEDRPPPDY--LDQQPDINPKMRAILIDWLVEVHEEFKLLPETLYLAV--NYLDRF 62

Query: 121 KSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRR 180
            S                ++LV V CL IA+K+ +   PS+ +      D ++    I R
Sbjct: 63  LSKQPV--------PRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYIT-DNAYTKEEILR 113

Query: 181 MELTLLQSLGWRLG 194
           MEL +L +L W L 
Sbjct: 114 MELLILSTLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.96
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.9
TIGR00569305 ccl1 cyclin ccl1. University). 99.8
KOG0835367 consensus Cyclin L [General function prediction on 99.64
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.58
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.46
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.39
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.34
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.3
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.2
PRK00423310 tfb transcription initiation factor IIB; Reviewed 98.91
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 98.82
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 97.9
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 97.54
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 97.49
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 97.38
KOG1597308 consensus Transcription initiation factor TFIIB [T 97.04
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 96.95
KOG1598 521 consensus Transcription initiation factor TFIIIB, 89.68
KOG1674218 consensus Cyclin [General function prediction only 88.97
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=3e-48  Score=371.48  Aligned_cols=221  Identities=29%  Similarity=0.423  Sum_probs=193.0

Q ss_pred             cCHHHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhccccccc
Q 048738           51 EECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVL  129 (355)
Q Consensus        51 e~~~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~  129 (355)
                      -+.++++..|+++|.+|.|+.+|...+ |..+++.+|.++++||++|+++   +++.++|++| ||||||||+..     
T Consensus        43 ~~~e~~i~~ll~kEe~~~p~~~~~~~~-~~~~~~~~R~~A~~WIl~V~~~---~~~~~~~~~LA~NYlDRFls~~-----  113 (335)
T KOG0656|consen   43 LWDERVLANLLEKEEQHNPSLDYFLCV-QKLILSSMRKQALDWILKVCEE---YNFEPLVFLLAMNYLDRFLSSQ-----  113 (335)
T ss_pred             cccHHHHHHHHHHHHHhCCCCchhhhc-ccccccHHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHhhccc-----
Confidence            357899999999999999999987777 8889999999999999999999   6889999999 99999999999     


Q ss_pred             CCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhc
Q 048738          130 SPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNF  209 (355)
Q Consensus       130 ~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~  209 (355)
                      .++++++|++||+|+|||+||||+||+.+|.+.|++|..+++.|.+++|+|||+.||++|+|||+++||++|+++|++++
T Consensus       114 ~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI~rmELLVLstL~Wrl~aVTP~sF~~~fl~ki  193 (335)
T KOG0656|consen  114 KLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTIQRMELLVLSTLKWRLRAVTPFSFIDHFLSKI  193 (335)
T ss_pred             ccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHHHHHHHHHHhhccccccCCCchHHHHHHHHHc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhHHHHHHH---HHHHHcccccccCCCHHHHHHHHHHHHHHhhcCC-ChhHHHHHhcccCcCChhhHHHHHH
Q 048738          210 DSLEFHLHNELTTL---HINQTNADARLLKYQPSVVAVSALWCSLDELTAS-SCAHVAFITRLFNQEQKDDVVRCNM  282 (355)
Q Consensus       210 ~~~~~~~~~~~~~~---~ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~-w~~~l~~~s~~~~~~~~e~v~~C~~  282 (355)
                      +... +....++..   .++.+..|..|++|+||+||+|++..+...+.+. +.........+. .+.++.+..|+.
T Consensus       194 ~~~~-~~~~~~~~~~s~~ll~~~~d~~Fl~y~pSviAaa~~~~v~~~~~~l~~~~~~~~~~~~~-~l~~e~~~~~~~  268 (335)
T KOG0656|consen  194 SQKD-HNKHLFLKHASLFLLSVITDIKFLEYPPSVIAAAAILSVSASVDGLDFREYENNLLSLL-SLSKEKVNRCYD  268 (335)
T ss_pred             Cccc-chHHHHHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHhhcchhhhhhhHHHHHHH-HhhHHhhhcchh
Confidence            8543 233333322   2678999999999999999999999888877655 322122233333 256888999998

>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 8e-04
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 8e-04
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 8e-04
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 9e-04
1vin_A268 Bovine Cyclin A3 Length = 268 9e-04
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 9e-04
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure 
Iteration: 1

 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 27/197 (13%)
Query: 69  PEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDIKKSVYVTCV 128
           P+ GY++   Q +     R   + WL++V   Y L + +LHL             Y+   
Sbjct: 25  PKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVN----------YIDRF 72
Query: 129 LSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQS 188
           LS        ++LV  A + +ASKF +   P + E  +   D ++    + RME  +L+ 
Sbjct: 73  LSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEF-VYITDDTYTKKQVLRMEHLVLKV 131
Query: 189 LGWRLGCITTYSYVELLLTN-------FDSLEFHLHNELTTLHINQTNADARLLKYQPSV 241
           L + L   T   ++     +        +SL   L  EL+ +     +AD   LKY PSV
Sbjct: 132 LAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFL-GELSLI-----DADP-YLKYLPSV 184
Query: 242 VAVSALWCSLDELTASS 258
           +A +A   +L  +T  S
Sbjct: 185 IAAAAFHLALYTVTGQS 201
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 2e-21
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 3e-20
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 2e-15
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 2e-15
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 4e-15
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 2e-14
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 6e-14
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 5e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 3e-04
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
 Score = 92.2 bits (229), Expect = 2e-21
 Identities = 50/284 (17%), Positives = 98/284 (34%), Gaps = 34/284 (11%)

Query: 25  DKKPKQCNILESCECECDGTSFYKTKEECEEAAIIC--LEKELSYMPEPGYVEYLDQSNN 82
           DK P     L  CE                +  ++   L  E  Y+P   Y + + Q   
Sbjct: 8   DKSPGGSMELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCV-QREI 66

Query: 83  LPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDIKKSV-YVTCVLSPAEWKYWMVEL 141
            PH R     W+++V            L           ++ Y+   LS    +   ++L
Sbjct: 67  KPHMRKMLAYWMLEVCEEQRCEEEVFPL-----------AMNYLDRYLSCVPTRKAQLQL 115

Query: 142 VSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSY 201
           +   C+ +ASK  +T+  ++ +      D++     +R  E+ +L  L W L  +  + +
Sbjct: 116 LGAVCMLLASKLRETTPLTIEK-LCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDF 174

Query: 202 VELLL------TNFDSLEFHLHN---ELTTLHINQTNADARLLKYQPSVVAVSALWCSLD 252
           +  +L       +  +L          L          D     Y PS++A  ++  ++ 
Sbjct: 175 LAFILHRLSLPRDRQALVKKHAQTFLALCAT-------DYTFAMYPPSMIATGSIGAAVQ 227

Query: 253 ELTASSCAHVAFITRL--FNQEQKDDVVRCNMIMKSRLVDPLSN 294
            L A S +       L      + D +  C   +++ L + L  
Sbjct: 228 GLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLRE 271
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.97
2ivx_A257 Cyclin-T2; transcription regulation, cell division 99.97
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 99.96
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.96
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.96
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.95
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.87
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.76
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.4
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 98.47
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.84
1ais_B200 TFB TFIIB, protein (transcription initiation facto 84.75
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.3e-44  Score=345.99  Aligned_cols=224  Identities=19%  Similarity=0.292  Sum_probs=195.3

Q ss_pred             CHHHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccC
Q 048738           52 ECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLS  130 (355)
Q Consensus        52 ~~~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~  130 (355)
                      |.+|++.+|+++|.++.|+++|++.. |+++++.||.++|+||++|+.+   +++.++|+++ |+||||||++.     .
T Consensus        37 ~~~~i~~~l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~ev~~~---~~l~~~t~~lAv~~lDRfls~~-----~  107 (306)
T 3g33_B           37 GDQRVLQSLLRLEERYVPRASYFQCV-QREIKPHMRKMLAYWMLEVCEE---QRCEEEVFPLAMNYLDRYLSCV-----P  107 (306)
T ss_dssp             CHHHHHHHHHHHGGGGSCSSCCTTTS-TTTCCHHHHHHHHHHHHHHHHH---TTCCTTHHHHHHHHHHHHHHHC-----C
T ss_pred             chHHHHHHHHHHHHHhCCCcHHHhhc-CccCCHHHHHHHHHHHHHHHHH---hCCcHhHHHHHHHHHHHHHhcC-----C
Confidence            67899999999999999999999876 8999999999999999999999   8999999999 99999999999     6


Q ss_pred             CccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcC
Q 048738          131 PAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFD  210 (355)
Q Consensus       131 ~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~  210 (355)
                      +.+   +++||+|+|||+||+|+||..+|.+.+| +..+++.|++++|++||+.||++|+|+++.|||++||++|+..++
T Consensus       108 v~~---~~lqLv~~tcL~lAsK~eE~~p~~~~~l-~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~  183 (306)
T 3g33_B          108 TRK---AQLQLLGAVCMLLASKLRETTPLTIEKL-CIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLS  183 (306)
T ss_dssp             CCG---GGHHHHHHHHHHHHHHHHCSSCCCTTHH-HHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSS
T ss_pred             CcH---HHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcC
Confidence            643   5999999999999999999999999999 778899999999999999999999999999999999999999886


Q ss_pred             CcchhhH--HHHHHHHHHHHcccccccCCCHHHHHHHHHHHHHHhhcCC--C----hhHHHHHhcccCcCChhhHHHHHH
Q 048738          211 SLEFHLH--NELTTLHINQTNADARLLKYQPSVVAVSALWCSLDELTAS--S----CAHVAFITRLFNQEQKDDVVRCNM  282 (355)
Q Consensus       211 ~~~~~~~--~~~~~~~ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~--w----~~~l~~~s~~~~~~~~e~v~~C~~  282 (355)
                      .......  ......++..++.++.|+.|+||+||||||++|+..++..  |    ...+..++|+    ++++|..|++
T Consensus       184 ~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~----~~~~l~~c~~  259 (306)
T 3g33_B          184 LPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGT----EVDCLRACQE  259 (306)
T ss_dssp             CCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTC----CHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCC----CHHHHHHHHH
Confidence            4332111  1111122568999999999999999999999999987643  5    4556677777    4899999999


Q ss_pred             HHHHhhhCCC
Q 048738          283 IMKSRLVDPL  292 (355)
Q Consensus       283 ~m~~~~~~~~  292 (355)
                      .|.+++.++.
T Consensus       260 ~I~~l~~~~l  269 (306)
T 3g33_B          260 QIEAALRESL  269 (306)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHHHH
Confidence            9999987753
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 355
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 3e-16
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 3e-15
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 4e-14
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 7e-11
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 9e-11
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 6e-07
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 1e-05
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 6e-05
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

 Score = 72.3 bits (177), Expect = 3e-16
 Identities = 27/134 (20%), Positives = 41/134 (30%), Gaps = 12/134 (8%)

Query: 60  CLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFPTNRVDI 119
            LE E  ++          Q +   H R     W+  V   Y L    + L         
Sbjct: 10  ILEIEPRFLTSDSVFGTF-QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALAL------- 61

Query: 120 KKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIR 179
                +  +L   +      +    ACL +ASK    +  S   +       SF    + 
Sbjct: 62  ---NLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAA-ADSFSRQELI 117

Query: 180 RMELTLLQSLGWRL 193
             E  LL+ L WR 
Sbjct: 118 DQEKELLEKLAWRT 131
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.97
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.97
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.97
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.96
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.94
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.73
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.67
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.64
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.34
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 97.66
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 97.38
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 97.34
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 96.12
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 95.96
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 95.7
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 94.34
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 93.52
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 90.28
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 90.06
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 87.93
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 81.93
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

Probab=99.97  E-value=6.9e-33  Score=233.05  Aligned_cols=129  Identities=19%  Similarity=0.203  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCC
Q 048738           53 CEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSP  131 (355)
Q Consensus        53 ~~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~  131 (355)
                      .++++++|++.|.+|.|+++|+..+ |+++++.+|..+||||.+|+..   ++++++|+|+ |+|||||+++.     .+
T Consensus         3 ~~~i~~~l~~~E~~~~p~~~y~~~~-q~~it~~~R~~lidWl~~v~~~---~~l~~et~~lAv~llDrfls~~-----~v   73 (132)
T d1g3nc1           3 EDRIFYNILEIEPRFLTSDSVFGTF-QQSLTSHMRKLLGTWMFSVCQE---YNLEPNVVALALNLLDRLLLIK-----QV   73 (132)
T ss_dssp             HHHHHHHHHHHGGGGCCCGGGHHHH-TSSCCHHHHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHTTTC-----CC
T ss_pred             hHHHHHHHHHHHHHHCCChHHHHhc-CccCCHHHHHHHHHHHHHHHHH---hCCCcchHHHHHHHHHHHcCcc-----cC
Confidence            5789999999999999999999998 8999999999999999999999   8899999999 99999999998     67


Q ss_pred             ccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCccc
Q 048738          132 AEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLG  194 (355)
Q Consensus       132 ~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~  194 (355)
                      ++   .++||+|+|||+||+|+||..+|.+.++ +..+++.|++++|.+||+.||++|+|++.
T Consensus        74 ~~---~~lqLia~tcl~iAsK~ee~~~~~~~~l-~~~~~~~~t~~ei~~mE~~IL~~L~w~l~  132 (132)
T d1g3nc1          74 SK---EHFQKTGSACLLVASKLRSLTPISTSSL-CYAAADSFSRQELIDQEKELLEKLAWRTE  132 (132)
T ss_dssp             CH---HHHHHHHHHHHHHHHHHHCSSCCCHHHH-HHHTTTCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             cH---HHHHHHHHHHHHHHHHhcccCCCCHHHH-HHHHcCCCCHHHHHHHHHHHHHHcCCcCC
Confidence            54   4899999999999999999999999999 78899999999999999999999999974
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure