Citrus Sinensis ID: 048744

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHGSGTEDPSTQTSK
Secondary Structure (PSIPRED)
cccHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHcccccccccHHHHccccHHHHHHccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHccHHHHHHHccccccHHHEEEEccccccHHHHccHHHHHHHHcccccccHHHHccccccHHHHHHcHccccccccHHHHHcccHHHHHcccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHccccccccHHcc
Coil and Loop (DISEMBL)
MANELEELLgflcspspsvkKAAVDIVRGLtgsedglqslskySKIALPSLARLLSenkevsepaTEALVNLSQNSELAGKMVQMGMIKTAMDllykpdssITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCrssseasddpfehVGSILVNISKKEagrkilldpkrGLLKQIVRQFdssnylrkkgvsgtirnCCFEAEHQLQNLLLISeflwpalllpvagnkvykeedtskIPLELASALrierepvddpeiRIQALESIYLITLQEAGLRAfwsvngprlvhgsgtedpstqtsk
Flexible Loop (DISEMBL)
MANELEELLGflcspspsVKKAAVDIVRGLTgsedglqslsKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSseasddpfehVGSILvniskkeagrkilldpkrglLKQIvrqfdssnylrkKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALrierepvddpeIRIQALESIYLITLQEAGLRAFWSVNGprlvhgsgtedpstqtsk
Low Complexity Region (SEG)
MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRllvmllvnltqlDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHGSGTEDPSTQTSK
Disordered region (IsUnstruct)
*******LLGFLC********AAVDIVRGL*************************************************GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCR*********FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLV**************
Disordered Region (DISOPRED)
*ANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELAS*L******VDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHGSGTE********
Disordered Region (DISEMBL)
MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFC**********FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVH*************
Disordered Region (DISPRO)
*ANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHGSGTE********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHGSGTEDPSTQTSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q76NW7	355	FAM203 family protein DDB	yes	no	0.887	0.780	0.262	7e-23
Q8C3I8	393	Protein FAM203A OS=Mus mu	yes	no	0.794	0.631	0.284	1e-16
P0CB43	390	Protein FAM203B OS=Homo s	yes	no	0.455	0.364	0.361	3e-16
Q9BTY7	390	Protein FAM203A OS=Homo s	yes	no	0.455	0.364	0.361	4e-16
Q6AY79	393	Protein FAM203A OS=Rattus	yes	no	0.679	0.539	0.312	4e-15
Q3KQ45	356	Protein FAM203A OS=Xenopu	N/A	no	0.862	0.755	0.266	4e-13
Q6DGR4	377	Protein FAM203A OS=Danio	yes	no	0.826	0.684	0.281	1e-12
Q66KK3	359	Protein FAM203A OS=Xenopu	yes	no	0.881	0.766	0.267	1e-11
Q297A7	368	FAM203 family protein GA1	yes	no	0.814	0.690	0.226	4e-11
Q9VBG6	369	FAM203 family protein CG6	yes	no	0.810	0.685	0.227	1e-10

>sp|Q76NW7|FA203_DICDI FAM203 family protein DDB_G0276861 OS=Dictyostelium discoideum GN=DDB_G0276861 PE=3 SV=1

 Score =  108 bits (269), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 152/290 (52%), Gaps = 13/290 (4%)

Query: 3   NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVS 62
           ++L EL+ FL  P   +K  A+  + G++ +++  + + K ++I    +  +   N  V 
Sbjct: 2   DQLPELVPFLLEPKSEIKLLALQHLLGVSDNQEA-RDILKSTQIINNCIKLITDSNHVVV 60

Query: 63  EPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISS 122
             A   L+NL Q++++   +V+  ++   +D      + ++ +  MLL N+T    G  S
Sbjct: 61  RHALTILINLCQDTDMLNDIVKKNIVPRLVDGTTDTKNKMSEIFAMLLSNVTHTKEGCLS 120

Query: 123 LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH-----VGSILVNISKKEAGRKILLD 177
           L+Q   E ++  ++MKLV+     S++  +D F+      + +I++N+++ + GRKI+LD
Sbjct: 121 LMQCGKE-LEAFFIMKLVQVLTMDSNQ--EDYFKSTKNNWIVNIILNVTQIQEGRKIVLD 177

Query: 178 PKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEF-LWPALLLPVAG 236
            +  + K+I+      N ++++G+ G IRNCC+  +H   + L+  E  +   L LP+ G
Sbjct: 178 KENQIFKEILPLVRHENVIKRRGILGIIRNCCYSEQH--HDYLISPEVDILTKLCLPIRG 235

Query: 237 NKVYKEEDTSKIPLELA-SALRIEREPVDDPEIRIQALESIYLITLQEAG 285
           N    ++D   + ++L  S+L I  E   D E R   +ES+  +T  + G
Sbjct: 236 NDKLDDDDLVGLHIDLHNSSLPIGNERDQDRECRKMVVESLIFLTGTKKG 285

Dictyostelium discoideum (taxid: 44689)

>sp|Q8C3I8|F203A_MOUSE Protein FAM203A OS=Mus musculus GN=Fam203a PE=2 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 142/271 (52%), Gaps = 23/271 (8%)

Query: 27  VRGLTGSEDGLQSLSKYSKI--ALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQ 84
           V  LTG+  G   L+   ++  AL  LA  ++     S  A+ ALVNL+ +  +  +++ 
Sbjct: 50  VLALTGAGSGRTLLAGQPELLRALVDLA--VAPAPAPSRDASRALVNLAADPNVHWQLLA 107

Query: 85  MG------MIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQ-VEDEQIQGLYVM 137
                   +++  +D    P          +L NL++     ++L++ +   + + L + 
Sbjct: 108 ADPELPARLLRCVLD----PQWPWAEEAAAVLANLSREPAPCAALMEKLMAAEPERLGLE 163

Query: 138 KLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIV--RQFDSSNY 195
           +LV + C  S  A+  P  ++G +L N+S++   R  LLDP R ++++++   Q+  S+ 
Sbjct: 164 RLVNALCTPSYNAAA-PLHYLGPLLSNLSQQAEVRAFLLDPDRCVVQRLLPLTQYTDSS- 221

Query: 196 LRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELAS- 254
           +R+ GV GT+RNCCFE  H  + LL     + P LLLP+AG + + EE+  ++P++L   
Sbjct: 222 VRRGGVVGTLRNCCFEHRHH-KWLLGAQVDILPFLLLPLAGPEEFSEEEMDQLPVDLQYL 280

Query: 255 ALRIEREPVDDPEIRIQALESIYLITLQEAG 285
           +   +REP  D +IR   +E++ L+T    G
Sbjct: 281 SPDKQREP--DADIRKMLIEAVMLLTATAPG 309

Mus musculus (taxid: 10090)

>sp|P0CB43|F203B_HUMAN Protein FAM203B OS=Homo sapiens GN=FAM203B PE=2 SV=1

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 10/152 (6%)

Query: 138 KLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIV--RQFDSSNY 195
           +LVR+ C     A   P  ++  +L N+S++ A R  LLDP R ++++++   Q+  S+ 
Sbjct: 157 RLVRALCTPGYNARA-PLHYLAPLLSNLSQRPAARAFLLDPDRCVVQRLLPLTQYPDSS- 214

Query: 196 LRKKGVSGTIRNCCFEAEHQLQNLLLISEF-LWPALLLPVAGNKVYKEEDTSKIPLELAS 254
           +R+ GV GT+RNCCF  EH+    LL  E  + P LLLP+AG + + EE+  ++P++L  
Sbjct: 215 VRRGGVVGTLRNCCF--EHRHHEWLLGPEVDILPFLLLPLAGPEDFSEEEMQRLPVDLQY 272

Query: 255 -ALRIEREPVDDPEIRIQALESIYLITLQEAG 285
                +REP  D +IR   +E+I L+T    G
Sbjct: 273 LPPDKQREP--DADIRKMLVEAIMLLTATAPG 302

Homo sapiens (taxid: 9606)

>sp|Q9BTY7|F203A_HUMAN Protein FAM203A OS=Homo sapiens GN=FAM203A PE=1 SV=1

 Score = 85.9 bits (211), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 10/152 (6%)

Query: 138 KLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIV--RQFDSSNY 195
           +LVR+ C     A   P  ++  +L N+S++ A R  LLDP R ++++++   Q+  S+ 
Sbjct: 157 RLVRALCTPGYNARA-PLHYLAPLLSNLSQRPAARAFLLDPDRCVVQRLLPLTQYPDSS- 214

Query: 196 LRKKGVSGTIRNCCFEAEHQLQNLLLISEF-LWPALLLPVAGNKVYKEEDTSKIPLELAS 254
           +R+ GV GT+RNCCF  EH+    LL  E  + P LLLP+AG + + EE+  ++P++L  
Sbjct: 215 VRRGGVVGTLRNCCF--EHRHHEWLLGPEVDILPFLLLPLAGPEDFSEEEMERLPVDLQY 272

Query: 255 -ALRIEREPVDDPEIRIQALESIYLITLQEAG 285
                +REP  D +IR   +E+I L+T    G
Sbjct: 273 LPPDKQREP--DADIRKMLVEAIMLLTATAPG 302

Homo sapiens (taxid: 9606)

>sp|Q6AY79|F203A_RAT Protein FAM203A OS=Rattus norvegicus GN=Fam203a PE=2 SV=1

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 127/237 (53%), Gaps = 25/237 (10%)

Query: 62  SEPATEALVNLSQNSELAGKMVQ------MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ 115
           S  A+ ALVNL+ + +L  +M+       + +++  +D    P       L  +L NL++
Sbjct: 85  SRDASRALVNLAADPDLHWQMLAADPELPVRLLRCVLD----PQWPWAEELAAVLANLSR 140

Query: 116 LDYGIS----SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAG 171
                +     L+  E E+   L + +LV + C  S  AS  P  ++G +L N+S++   
Sbjct: 141 EPAPCAVLTEKLVAAEPER---LGLERLVSALCMPSYNASA-PLHYLGPLLSNLSQQAEV 196

Query: 172 RKILLDPKRGLLKQIV--RQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPA 229
           R  LLDP R ++++++   Q+  S+ +R+ GV GT+RNCCFE  H  + LL     + P 
Sbjct: 197 RAFLLDPDRCVVQRLLPLTQYTDSS-VRRGGVVGTLRNCCFEHRHH-KWLLGPQVDILPF 254

Query: 230 LLLPVAGNKVYKEEDTSKIPLELAS-ALRIEREPVDDPEIRIQALESIYLITLQEAG 285
           LLLP+AG + + EE+  ++P++L   +   +REP  D +IR   +E+I L+T    G
Sbjct: 255 LLLPLAGPEEFSEEEMEELPVDLQYLSPDKQREP--DADIRKMLIEAIMLLTATAPG 309

Rattus norvegicus (taxid: 10116)

>sp|Q3KQ45|F203A_XENLA Protein FAM203A OS=Xenopus laevis GN=fam203a PE=2 SV=1

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 144/289 (49%), Gaps = 20/289 (6%)

Query: 7   ELLGFLCSPS-PSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPA 65
           ELL FL   +   V+  A++ + G++G+ +G QSL    ++    L     ++  +++ A
Sbjct: 8   ELLSFLKPETRADVRAQALEYILGVSGTPEGRQSLCAEPRLLQVVLDLTTEQSAHIAQDA 67

Query: 66  TEALVNLSQNSELAGKMVQMGMIKTAMDLLY----KPDSSITRLLVMLLVNLTQLDYGIS 121
              LVNL+ +      +  +G + T +  L      P    +      L NL++ +    
Sbjct: 68  HHVLVNLTSDPTTHKSL--LGHVPTLLPSLLTLLQDPTCPFSDSTCTALCNLSREEESCQ 125

Query: 122 SLLQVEDEQIQGLYVMKLVRSFC--RSSSEASDDPFEHVGSILVNISKKEAGRKILLDPK 179
           S LQ   ++  GL   +L+   C  + +  AS    +++G ++ N+++   GR  +LD  
Sbjct: 126 SFLQTLKQE--GL--CQLLHMLCTPKYNGHAS---LDYLGPLVCNLTQLPEGRDFILDRD 178

Query: 180 RGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEF-LWPALLLPVAGNK 238
           R ++++++    + + +RK G+ GT+RNCCF   H+    LL  +  L P LLLP+AG +
Sbjct: 179 RCVIQRLLPYVTAGSTVRKGGIVGTLRNCCF--NHRDHEWLLSDQVDLLPFLLLPLAGGE 236

Query: 239 VYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLR 287
            Y +E+   +P +L   L  ++E   DP+IR   +E++ L+     G R
Sbjct: 237 EYTDEEMESLPPDL-QYLPEDKERESDPDIRKMLIETVQLLCATAGGRR 284

Xenopus laevis (taxid: 8355)

>sp|Q6DGR4|F203A_DANRE Protein FAM203A OS=Danio rerio GN=fam203a PE=2 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 138/274 (50%), Gaps = 16/274 (5%)

Query: 3   NELEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSE-NKE 60
           +E ++LL FL       VK  A   + GLTG+ DG + L       L +L  L S+ +  
Sbjct: 5   DEAKDLLSFLTLEMRADVKGQATGYILGLTGNRDGCRYLQSKPDF-LKALVTLTSDPSIA 63

Query: 61  VSEPATEALVNLSQNSELAGKMV-QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYG 119
           + +    AL+NLS +  L   +V +  ++   +  L  P+   +  +  +L NL++ +  
Sbjct: 64  IVKDCFHALINLSADETLHQPLVKETEILSKLIPKLQDPEFVFSDRICTILSNLSRHEQT 123

Query: 120 ISSLLQVEDEQIQGLYVMKLVRSFCRS--SSEASDDPFEHVGSILVNISKKEAGRKILLD 177
              + +   E   GL   +LV  FC    + +AS     ++  +L N+++    R  +LD
Sbjct: 124 CRDVFKALQELNVGLD--RLVEIFCTEGFNKKAS---LHYLAPLLSNLTQLPEARHFILD 178

Query: 178 PKRGLLKQIV--RQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVA 235
             R ++++++   Q++ S   R+ GV GT+RNCCF+  H  + LL  +  + P LLLP+A
Sbjct: 179 KDRCVIQRLLPFTQYEES-ITRRGGVVGTLRNCCFDYVHH-EWLLSDAVDILPFLLLPLA 236

Query: 236 GNKVYKEEDTSKIPLELASALRIEREPVDDPEIR 269
           G +   EE+   +P++L   L  ++   +DP+IR
Sbjct: 237 GPEELSEEENEGLPVDL-QYLPEDKRREEDPDIR 269

Danio rerio (taxid: 7955)

>sp|Q66KK3|F203A_XENTR Protein FAM203A OS=Xenopus tropicalis GN=fam203a PE=2 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 149/306 (48%), Gaps = 31/306 (10%)

Query: 7   ELLGFLCSPS--PSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEP 64
           ELL FL  P     V+  A++ + G++GS +G QSL    ++    L     ++  V++ 
Sbjct: 8   ELLSFL-KPETRADVRAQALEYILGVSGSPEGRQSLCAEPRLLCALLDLSTEQSPHVAQD 66

Query: 65  ATEALVNLSQNSELAGKMVQMGMIKT----AMDLLYKPDSSITRLLVMLLVNLTQLDYGI 120
           A   LVNL+  S+ A     +  + T     +  L  P       +   L NL++ +   
Sbjct: 67  AHHVLVNLT--SDCAAHRALLAHVPTLLPSMLSRLRDPGCPFADSICTALCNLSREEETC 124

Query: 121 SSLLQVEDEQIQGLYVMKLVRSFC--RSSSEASDDPFEHVGSILVNISKKEAGRKILLDP 178
            S L+   ++     + +L+   C  + +  AS    +++G +L N+++   GR  +LD 
Sbjct: 125 QSFLRSLTQE----GMCQLLDMLCAPKYNPRAS---LDYLGPLLCNLTQLPEGRHFILDR 177

Query: 179 KRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEF-LWPALLLPVAGN 237
            R ++++++    S + +R+ G+ GT+RNCCF   H+    LL  +  L P LLLP+AG 
Sbjct: 178 NRCVVQRLLPYLQSGSTVRRGGIVGTLRNCCF--SHRDHAWLLGDDVDLLPFLLLPLAGG 235

Query: 238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRL 297
           + + EE+   +P +L   L  +++   DP+IR   +E++ L+           + +G RL
Sbjct: 236 EEFTEEEMETLPPDL-QYLAEDKQREADPDIRKMLIETVLLLC---------ATADGRRL 285

Query: 298 VHGSGT 303
           V   GT
Sbjct: 286 VKQRGT 291

Xenopus tropicalis (taxid: 8364)

>sp|Q297A7|FA203_DROPS FAM203 family protein GA19338 OS=Drosophila pseudoobscura pseudoobscura GN=GA19338 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 127/269 (47%), Gaps = 15/269 (5%)

Query: 18  SVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSE 77
            +K  A+  V GLTGS +G  ++     + +        +N  V++ A  +L+NL+ + E
Sbjct: 18  DLKAVALTHVLGLTGSAEGKAAILALDDMLMAIFGLTFDDNHTVAKDAVLSLINLTADEE 77

Query: 78  LAGKMVQMG--------MIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDE 129
            A K+  +         +++ A   +    S +     M+L NLT+++  +  +L + + 
Sbjct: 78  CATKVFHLAKRIQPPFAIVEVAATQISDEQSPLADPWSMVLSNLTRVESLVHEILDILER 137

Query: 130 QIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQ 189
             Q L   +L ++F +           ++  I  N+++   GR++    +  LL++++  
Sbjct: 138 GEQTL--PRLAKAFAQLDYNKKKARLHYLAPIFCNLTQVARGRELCCHARYQLLEKLL-P 194

Query: 190 FDS--SNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSK 247
           F S   N +R+ G  G ++N CF+A +    +L   + +  A+L P+ G + + +E+   
Sbjct: 195 FASYEENVVRRGGTIGILKNVCFDAVYH-GVILGEDDNILVAILQPLCGPEEFSDEENDM 253

Query: 248 IPLELASALRIEREPVDDPEIRIQALESI 276
           +P+EL   L   +    DP++R   LE +
Sbjct: 254 LPIEL-QYLPESKTRETDPDLRKMLLECL 281

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9VBG6|FA203_DROME FAM203 family protein CG6073 OS=Drosophila melanogaster GN=CG6073 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 125/268 (46%), Gaps = 15/268 (5%)

Query: 19  VKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSEL 78
           +K  A+  V GLTGS +G  ++    ++ +         N+ V++ A  +L+NL+   E 
Sbjct: 19  LKAVALTHVLGLTGSSEGKSAILSLDEMLMAIFGLTFDANQTVAKDAVLSLINLTSEEEA 78

Query: 79  AGKMVQMG--------MIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQ 130
           A K+ Q+         +++ A   +    S +     M+L NLT+++  +  +L   +  
Sbjct: 79  AIKVFQLAKQLQPPFAIVEVAAKEITNEQSDLADPWSMVLSNLTRVESLVHEILDTLERD 138

Query: 131 IQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIV--R 188
              L   +L ++F +           ++  I  N+++   GR++    K  LL++++   
Sbjct: 139 DHTL--PRLAKAFAQLDYNKKKAKLHYLAPIFCNLTQVSRGRELCCHRKYELLEKLLPFA 196

Query: 189 QFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKI 248
            F+ S  +R+ G  G ++N CF+  +    +L     +  A+L P+ G + + +ED   +
Sbjct: 197 SFEGS-VVRRGGTIGILKNVCFDTVYH-DVILNEQSSILVAILQPLCGPEEFSDEDNELL 254

Query: 249 PLELASALRIEREPVDDPEIRIQALESI 276
           P+EL   L   +   +DP++R   LE +
Sbjct: 255 PIEL-QYLPESKTREEDPDLRKMLLECL 281

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
224121840	336	predicted protein [Populus trichocarpa]	1.0	0.928	0.755	1e-140
225425714	336	PREDICTED: FAM203 family protein DDB_G02	1.0	0.928	0.741	1e-137
224145278	329	predicted protein [Populus trichocarpa]	0.980	0.930	0.785	1e-136
255562832	332	conserved hypothetical protein [Ricinus	0.974	0.915	0.796	1e-136
147777641	330	hypothetical protein VITISV_032485 [Viti	0.974	0.921	0.783	1e-135
297849836	339	binding protein [Arabidopsis lyrata subs	0.958	0.882	0.775	1e-133
449443770	332	PREDICTED: FAM203 family protein DDB_G02	0.974	0.915	0.747	1e-131
356567515	336	PREDICTED: protein FAM203A-like [Glycine	1.0	0.928	0.699	1e-131
15223707	339	armadillo/beta-catenin-like repeats-cont	0.958	0.882	0.759	1e-130
26449855	339	unknown protein [Arabidopsis thaliana]	0.958	0.882	0.752	1e-129

>gi|224121840|ref|XP_002330666.1| predicted protein [Populus trichocarpa] gi|118489595|gb|ABK96599.1| unknown [Populus trichocarpa x Populus deltoides] gi|222872270|gb|EEF09401.1| predicted protein [Populus trichocarpa]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 254/336 (75%), Positives = 281/336 (83%), Gaps = 24/336 (7%)

Query: 1   MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKE 60
           MA ELEEL+GFL SPSP VKKAAV+IVR LTGSEDGL SLSKY+   LPSL++LL E KE
Sbjct: 1   MATELEELVGFLSSPSPPVKKAAVEIVRDLTGSEDGLLSLSKYASTVLPSLSQLLKEKKE 60

Query: 61  VSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI 120
           VSEPA EAL+NLS NS LA KMV+MGMIKTAMD+LYKPDSSITRLLVMLLVNLTQLD GI
Sbjct: 61  VSEPAAEALINLSLNSNLAAKMVEMGMIKTAMDVLYKPDSSITRLLVMLLVNLTQLDSGI 120

Query: 121 SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKR 180
            SLLQ+EDE++QGL+VMKLVRSF RSS E  DDPF+HVGSILVNISKKEAGRK+LLD KR
Sbjct: 121 VSLLQIEDEKMQGLFVMKLVRSFGRSSDETRDDPFDHVGSILVNISKKEAGRKMLLDSKR 180

Query: 181 GLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVY 240
           GLLKQI+RQFDS++ LRKKGVSGT+RNCCFEAE+QLQN LLISEFLWPALLLPVAG K+Y
Sbjct: 181 GLLKQILRQFDSTSPLRKKGVSGTLRNCCFEAENQLQNFLLISEFLWPALLLPVAGKKIY 240

Query: 241 KEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPR---- 296
            E+DTSK+PLEL SAL IEREP DDPEIR++ALESIYLI +QEAGLRA WSVNGPR    
Sbjct: 241 SEQDTSKMPLELGSALSIEREPWDDPEIRVEALESIYLIIVQEAGLRALWSVNGPRILQV 300

Query: 297 --------------------LVHGSGTEDPSTQTSK 312
                               LVHG GTE+PST+TSK
Sbjct: 301 GYEDEEDPKVMEAYERVGSLLVHGCGTEEPSTETSK 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425714|ref|XP_002275397.1| PREDICTED: FAM203 family protein DDB_G0276861 [Vitis vinifera] gi|296086382|emb|CBI31971.3| unnamed protein product [Vitis vinifera]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/336 (74%), Positives = 276/336 (82%), Gaps = 24/336 (7%)

Query: 1   MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKE 60
           M  ELEEL+GFL +PSP VKKAAVDIV+GLTGSEDGLQSL  +S + +PSL+R+LSE KE
Sbjct: 1   MPTELEELVGFLSAPSPQVKKAAVDIVQGLTGSEDGLQSLCSHSDVLIPSLSRVLSEKKE 60

Query: 61  VSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI 120
           VSEPA EAL+NLSQ  E A KMV MGMIKTAMD+LYK  S ITRLLVMLLVNLTQ D GI
Sbjct: 61  VSEPAAEALINLSQKPEQAAKMVAMGMIKTAMDILYKQGSGITRLLVMLLVNLTQSDDGI 120

Query: 121 SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKR 180
           +SLLQ  DE+IQGLY+MKLVRSFC SS+E +DDPFEHVGSILVNISKK++GRK+LLDPKR
Sbjct: 121 ASLLQTGDEKIQGLYLMKLVRSFCTSSTETTDDPFEHVGSILVNISKKDSGRKMLLDPKR 180

Query: 181 GLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVY 240
           G+LKQIVRQFDS+N LRKKGVSG IRNCCFEAE QL+NLLLISEFLWP LLLPVAG+KVY
Sbjct: 181 GMLKQIVRQFDSTNPLRKKGVSGMIRNCCFEAETQLENLLLISEFLWPTLLLPVAGSKVY 240

Query: 241 KEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPR---- 296
            E DTSK+PLEL SAL IEREPV DPEIR+QALES+YLI+LQEAG RA WSVNGPR    
Sbjct: 241 SEHDTSKMPLELGSALSIEREPVGDPEIRVQALESLYLISLQEAGRRALWSVNGPRILQV 300

Query: 297 --------------------LVHGSGTEDPSTQTSK 312
                               LVHGSGTE+ STQTSK
Sbjct: 301 GYEDEEDPKVMEAFEQVGSLLVHGSGTEEFSTQTSK 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145278|ref|XP_002325587.1| predicted protein [Populus trichocarpa] gi|222862462|gb|EEE99968.1| predicted protein [Populus trichocarpa]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/308 (78%), Positives = 271/308 (87%), Gaps = 2/308 (0%)

Query: 1   MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKE 60
           MA ELEEL+GFL SPSP VKKAAV+IVR LTGSEDGL SLSKY+   LPSL++LL + KE
Sbjct: 1   MATELEELVGFLSSPSPPVKKAAVEIVRDLTGSEDGLLSLSKYASTMLPSLSQLLKDKKE 60

Query: 61  VSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI 120
           VSEPA EAL+NLS NS LA KMV+MGMIKTAMD+LYKPDSSITRLLVMLLVNLTQLD GI
Sbjct: 61  VSEPAAEALINLSLNSNLAAKMVEMGMIKTAMDVLYKPDSSITRLLVMLLVNLTQLDSGI 120

Query: 121 SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKR 180
            SLLQ+EDE++QGL+VMKLVRSFCRSS E  DDPF+HVGSILVNISKKEAGRK+LLD KR
Sbjct: 121 VSLLQIEDEKMQGLFVMKLVRSFCRSSDETRDDPFDHVGSILVNISKKEAGRKMLLDSKR 180

Query: 181 GLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVY 240
           GLLKQI+RQFDS++ LRKKGV GT+RNCCFEAE+QLQNLLLISEFLWPALLLPVAG ++Y
Sbjct: 181 GLLKQILRQFDSTSPLRKKGVFGTLRNCCFEAENQLQNLLLISEFLWPALLLPVAGKRIY 240

Query: 241 KEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHG 300
            EED SK+PLEL + L  EREP DDPEIR++ALESIYLIT+QEAGLRAFWSVNGPR++  
Sbjct: 241 SEEDASKMPLELGNVLSFEREPWDDPEIRVEALESIYLITVQEAGLRAFWSVNGPRILQF 300

Query: 301 --SGTEDP 306
                EDP
Sbjct: 301 WYEDEEDP 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562832|ref|XP_002522421.1| conserved hypothetical protein [Ricinus communis] gi|223538306|gb|EEF39913.1| conserved hypothetical protein [Ricinus communis]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/305 (79%), Positives = 271/305 (88%), Gaps = 1/305 (0%)

Query: 1   MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKE 60
           MA ELEEL+GFL SPS  V+KAAV IVR LTGSEDGL SLS YS   L SL RLLS+NKE
Sbjct: 1   MATELEELVGFLSSPSLPVQKAAVLIVRDLTGSEDGLLSLSNYSNNVLSSLVRLLSQNKE 60

Query: 61  VSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI 120
           VSEPA EALVNLSQNS LA KMV++G++K AMDLLYKPDSSITRLLVMLLVNLTQLD GI
Sbjct: 61  VSEPAAEALVNLSQNSNLAAKMVEIGIVKMAMDLLYKPDSSITRLLVMLLVNLTQLDAGI 120

Query: 121 SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKR 180
           SSLLQ +DE++QGL+VMKLVRSFCRSS E  DDPF+HVGS+LVNIS+KEAGRK+LLDPKR
Sbjct: 121 SSLLQADDEKMQGLFVMKLVRSFCRSSGETRDDPFDHVGSVLVNISQKEAGRKMLLDPKR 180

Query: 181 GLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVY 240
           GLLKQI+RQFDS++ +RKKGVSGTIRNCCFEAE+QLQ+LLL +EFLWPALLLPVAG K+Y
Sbjct: 181 GLLKQILRQFDSTSPVRKKGVSGTIRNCCFEAENQLQDLLLEAEFLWPALLLPVAGKKIY 240

Query: 241 KEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHG 300
            E+DTSK+PLEL SAL IERE  DDPEIR+QALESIYLITLQEAGLRAFWSVNGPR++  
Sbjct: 241 SEQDTSKMPLELGSALSIEREQCDDPEIRVQALESIYLITLQEAGLRAFWSVNGPRILQ- 299

Query: 301 SGTED 305
            G ED
Sbjct: 300 VGYED 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777641|emb|CAN67031.1| hypothetical protein VITISV_032485 [Vitis vinifera]

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/305 (78%), Positives = 267/305 (87%), Gaps = 1/305 (0%)

Query: 1   MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKE 60
           M  ELEEL+GFL +PSP VKKAAVDIV+GLTGSEDGLQSL  +S + +PSL+R+LSE KE
Sbjct: 1   MPTELEELVGFLSAPSPQVKKAAVDIVQGLTGSEDGLQSLCSHSDVLIPSLSRVLSEKKE 60

Query: 61  VSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI 120
           VSEPA EAL+NLSQ  E A KMV MGMIKTAMD+LYK  S ITRLLVMLLVNLTQ D GI
Sbjct: 61  VSEPAAEALINLSQKPEQAAKMVAMGMIKTAMDILYKQGSGITRLLVMLLVNLTQSDDGI 120

Query: 121 SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKR 180
           +SLLQ  DE+IQGLY+MKLVRSFC SS+E +DDPFEHVGSILVNISKK++GRK+LLDPKR
Sbjct: 121 ASLLQTGDEKIQGLYLMKLVRSFCTSSTETTDDPFEHVGSILVNISKKDSGRKMLLDPKR 180

Query: 181 GLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVY 240
           G+LKQIVRQFDS+N LRKKGVSGTIRNCCFEAE QL+NLLLISEFLWP LLLPVAG+KVY
Sbjct: 181 GMLKQIVRQFDSTNPLRKKGVSGTIRNCCFEAETQLENLLLISEFLWPTLLLPVAGSKVY 240

Query: 241 KEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHG 300
            E DTSK+PLEL SAL IEREPV DPEIR+QALES+YLI+LQEAG RA WSVNGPR++  
Sbjct: 241 SEHDTSKMPLELGSALSIEREPVGDPEIRVQALESLYLISLQEAGRRALWSVNGPRILQ- 299

Query: 301 SGTED 305
            G ED
Sbjct: 300 VGYED 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849836|ref|XP_002892799.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297338641|gb|EFH69058.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/299 (77%), Positives = 270/299 (90%)

Query: 1   MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKE 60
           MA ELEEL+ FL SPSP VKKAAV+IV GLTGSE+GLQSLSKYS+I LPSL+RLL+E+KE
Sbjct: 1   MATELEELVEFLSSPSPPVKKAAVEIVSGLTGSEEGLQSLSKYSEILLPSLSRLLNESKE 60

Query: 61  VSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI 120
           VSEPA +ALVNLSQNSELA KM+QMG+IK AMD+LYKP+S ITRLLVMLLVNLTQLD G+
Sbjct: 61  VSEPAAQALVNLSQNSELARKMIQMGLIKVAMDMLYKPESCITRLLVMLLVNLTQLDDGV 120

Query: 121 SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKR 180
           SSLLQ++DE++ GL++MKLVRSFCRSS E +DD FEHVGSILVNISK E GRK+LL+PKR
Sbjct: 121 SSLLQIDDEKMHGLHIMKLVRSFCRSSGETTDDQFEHVGSILVNISKTEDGRKLLLEPKR 180

Query: 181 GLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVY 240
           GLLKQI+RQFDS+N LRKKGV+GTIRNCCFEA++QLQN+LLISEFLWPALLLPVAG+K Y
Sbjct: 181 GLLKQIIRQFDSTNQLRKKGVAGTIRNCCFEAKNQLQNILLISEFLWPALLLPVAGSKTY 240

Query: 241 KEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVH 299
            E+D +K+P EL SAL IEREPV DP+IR+Q LE+IYLI L+EAG RAFWSVNGPR++ 
Sbjct: 241 SEQDIAKMPPELGSALSIEREPVTDPDIRVQTLEAIYLIILEEAGRRAFWSVNGPRILQ 299

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443770|ref|XP_004139650.1| PREDICTED: FAM203 family protein DDB_G0276861-like [Cucumis sativus]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/305 (74%), Positives = 269/305 (88%), Gaps = 1/305 (0%)

Query: 1   MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKE 60
           MA ELEEL+ FL SPSP ++KAA+DIV+GLTGSEDG+QSL+KY  + LPSLARLL E K+
Sbjct: 1   MATELEELIQFLSSPSPQLRKAAIDIVQGLTGSEDGMQSLAKYPDVLLPSLARLLKEQKD 60

Query: 61  VSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI 120
           V+E A EALVNLSQNS+LAGKM+ +G+I  AM+LLY  DSSI++LLVMLLVNLTQLD GI
Sbjct: 61  VAERAAEALVNLSQNSDLAGKMINLGLIGEAMNLLYNVDSSISQLLVMLLVNLTQLDAGI 120

Query: 121 SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKR 180
           +SLLQ  D+++QGLYVMK+VRSFCRS+SE+ DDPFEHV SILVNISKKEAGRK+LLDP R
Sbjct: 121 ASLLQTGDDKMQGLYVMKIVRSFCRSASESRDDPFEHVASILVNISKKEAGRKLLLDPNR 180

Query: 181 GLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVY 240
           GLLKQI+RQ+DS++ LRK GV GT+RNCCFEAE QLQNLLLI+EFLWPALLLPVAGNKVY
Sbjct: 181 GLLKQIIRQYDSNSQLRKNGVFGTLRNCCFEAEDQLQNLLLIAEFLWPALLLPVAGNKVY 240

Query: 241 KEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHG 300
           KEEDTSK+PLEL +AL IERE +DDPEIR+ ALE+IY+I LQ+AG RAFWS+NGPR++  
Sbjct: 241 KEEDTSKMPLELGTALSIEREQIDDPEIRVHALEAIYMIILQDAGRRAFWSINGPRILQ- 299

Query: 301 SGTED 305
            G ED
Sbjct: 300 VGYED 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567515|ref|XP_003551964.1| PREDICTED: protein FAM203A-like [Glycine max]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/336 (69%), Positives = 273/336 (81%), Gaps = 24/336 (7%)

Query: 1   MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKE 60
           MA E+EEL+ FL SPSP ++KAAVDIVRGLTGS +GLQSL+ YS   LP+L+RLL+  KE
Sbjct: 1   MATEMEELVSFLSSPSPQIRKAAVDIVRGLTGSVEGLQSLANYSNALLPALSRLLTLPKE 60

Query: 61  VSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI 120
           VSE A EALVNLSQNS LA  MV+MG++KTAMD+LYKPD  I RLLVMLLVNLTQL+ G 
Sbjct: 61  VSEAAAEALVNLSQNSSLAEVMVRMGLVKTAMDVLYKPDCGIARLLVMLLVNLTQLEAGA 120

Query: 121 SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKR 180
           +SLLQ EDE++ GLYV+KLVRSFCR++ E +DD FEHVGSILVNISK+  GR++LLDPKR
Sbjct: 121 ASLLQTEDEKVLGLYVIKLVRSFCRTTHENNDDAFEHVGSILVNISKQRKGRELLLDPKR 180

Query: 181 GLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVY 240
           GLLKQI+RQFDS++ LRKKGVSGTIRNCCFEAE+QLQNLLL+SEFLWPALLLPVAGNK+Y
Sbjct: 181 GLLKQIIRQFDSNSSLRKKGVSGTIRNCCFEAENQLQNLLLVSEFLWPALLLPVAGNKIY 240

Query: 241 KEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPR---- 296
            E+D SK+PLEL +AL IERE V+DPEIRIQALE+IYLI LQEAG RAFWSVNGPR    
Sbjct: 241 SEQDRSKMPLELGTALSIERELVNDPEIRIQALEAIYLIILQEAGRRAFWSVNGPRIVQI 300

Query: 297 --------------------LVHGSGTEDPSTQTSK 312
                               LVH S  E+PS+QT+K
Sbjct: 301 GYEDEEDPKVMEAYEQLGSLLVHSSSAEEPSSQTTK 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223707|ref|NP_172882.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi|7262671|gb|AAF43929.1|AC012188_6 EST gb|AI997595 comes from this gene [Arabidopsis thaliana] gi|89000955|gb|ABD59067.1| At1g14300 [Arabidopsis thaliana] gi|332191019|gb|AEE29140.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/299 (75%), Positives = 266/299 (88%)

Query: 1   MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKE 60
           M  ELEEL+ FL SPSP VKKAAV+IV GLTGSE+GLQSLSKYS+I LPSL++LL+E+KE
Sbjct: 1   MVTELEELVEFLSSPSPPVKKAAVEIVSGLTGSEEGLQSLSKYSEILLPSLSQLLNESKE 60

Query: 61  VSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI 120
           VSEPA +ALVNLSQ  ELA KM+QMG+IK AMD+LYKP+S ITRLLVMLLVNLTQLD G+
Sbjct: 61  VSEPAAQALVNLSQKCELAKKMIQMGLIKVAMDMLYKPESCITRLLVMLLVNLTQLDDGV 120

Query: 121 SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKR 180
           SSLLQ++DE++ GL++MKLVRSFCRSS E +DD FEHVGSILVNISK E GRK+LL+PKR
Sbjct: 121 SSLLQIDDEKMHGLHIMKLVRSFCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKR 180

Query: 181 GLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVY 240
            LLKQI+RQFDS+N LRKKGV+GTIRNCCFEA++QLQN+LLISEFLWPALLLPVAG+K Y
Sbjct: 181 RLLKQIIRQFDSTNQLRKKGVAGTIRNCCFEAKNQLQNILLISEFLWPALLLPVAGSKTY 240

Query: 241 KEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVH 299
            E+D +K+P EL SAL IEREPV DP+IR+Q LE+IYLI L+EAG RAFWSVNGPR++ 
Sbjct: 241 SEQDVAKMPPELGSALSIEREPVTDPDIRVQTLEAIYLIILEEAGRRAFWSVNGPRILQ 299

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26449855|dbj|BAC42050.1| unknown protein [Arabidopsis thaliana]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/299 (75%), Positives = 265/299 (88%)

Query: 1   MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKE 60
           M  ELEEL+ FL SPSP VKKAAV+IV GLTGSE+GLQSLSKYS++ LPSL++LL+E+KE
Sbjct: 1   MVTELEELVEFLSSPSPPVKKAAVEIVSGLTGSEEGLQSLSKYSEVLLPSLSQLLNESKE 60

Query: 61  VSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI 120
           VSEPA +ALVNLSQ  ELA KM+QMG+IK AMD+LYKP+S ITRLLVMLLVNL QLD G+
Sbjct: 61  VSEPAAQALVNLSQKCELAKKMIQMGLIKVAMDMLYKPESCITRLLVMLLVNLAQLDDGV 120

Query: 121 SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKR 180
           SSLLQ++DE++ GL++MKLVRSFCRSS E +DD FEHVGSILVNISK E GRK+LL+PKR
Sbjct: 121 SSLLQIDDEKMHGLHIMKLVRSFCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKR 180

Query: 181 GLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVY 240
            LLKQI+RQFDS+N LRKKGV+GTIRNCCFEA++QLQN+LLISEFLWPALLLPVAG+K Y
Sbjct: 181 RLLKQIIRQFDSTNQLRKKGVAGTIRNCCFEAKNQLQNILLISEFLWPALLLPVAGSKTY 240

Query: 241 KEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVH 299
            E+D +K+P EL SAL IEREPV DP+IR+Q LE+IYLI L+EAG RAFWSVNGPR++ 
Sbjct: 241 SEQDVAKMPPELGSALSIEREPVTDPDIRVQTLEAIYLIILEEAGRRAFWSVNGPRILQ 299

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
DICTYBASE|DDB_G0276861	355	DDB_G0276861 "armadillo-like h	0.887	0.780	0.244	2.1e-22
RGD|1359226	393	Fam203a "family with sequence	0.881	0.699	0.281	3.2e-20
ZFIN|ZDB-GENE-040718-228	377	fam203a "family with sequence	0.910	0.753	0.266	7.2e-20
MGI|MGI:1930628	393	Fam203a "family with sequence	0.875	0.694	0.279	3.5e-19
UNIPROTKB|Q9BTY7	390	FAM203A "Protein FAM203A" [Hom	0.878	0.702	0.286	9.5e-19
FB|FBgn0039417	369	CG6073 [Drosophila melanogaste	0.849	0.718	0.224	3.9e-11
UNIPROTKB|G4MT06	354	MGG_01501 "Uncharacterized pro	0.894	0.788	0.227	2.4e-10
UNIPROTKB|Q297A7	368	GA19338 "FAM203 family protein	0.852	0.722	0.211	7.9e-10
POMBASE|SPAC26F1.12c	356	SPAC26F1.12c "conserved eukary	0.897	0.786	0.223	1.6e-07
CGD|CAL0002914	362	HGH1 [Candida albicans (taxid:	0.887	0.765	0.235	7.9e-07

DICTYBASE|DDB_G0276861 DDB_G0276861 "armadillo-like helical domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 71/290 (24%), Positives = 145/290 (50%)

Query:     3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVS 62
             ++L EL+ FL  P   +K  A+  + G++ +++  + + K ++I    +  +   N  V 
Sbjct:     2 DQLPELVPFLLEPKSEIKLLALQHLLGVSDNQEA-RDILKSTQIINNCIKLITDSNHVVV 60

Query:    63 EPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRXXXXXXXXXXXXDYGISS 122
               A   L+NL Q++++   +V+  ++   +D      + ++               G  S
Sbjct:    61 RHALTILINLCQDTDMLNDIVKKNIVPRLVDGTTDTKNKMSEIFAMLLSNVTHTKEGCLS 120

Query:   123 LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH-----VGSILVNISKKEAGRKILLD 177
             L+Q   E ++  ++MKLV+     S++  +D F+      + +I++N+++ + GRKI+LD
Sbjct:   121 LMQCGKE-LEAFFIMKLVQVLTMDSNQ--EDYFKSTKNNWIVNIILNVTQIQEGRKIVLD 177

Query:   178 PKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEF-LWPALLLPVAG 236
              +  + K+I+      N ++++G+ G IRNCC+  +H   + L+  E  +   L LP+ G
Sbjct:   178 KENQIFKEILPLVRHENVIKRRGILGIIRNCCYSEQHH--DYLISPEVDILTKLCLPIRG 235

Query:   237 NKVYKEEDTSKIPLELA-SALRIEREPVDDPEIRIQALESIYLITLQEAG 285
             N    ++D   + ++L  S+L I  E   D E R   +ES+  +T  + G
Sbjct:   236 NDKLDDDDLVGLHIDLHNSSLPIGNERDQDRECRKMVVESLIFLTGTKKG 285

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

RGD|1359226 Fam203a "family with sequence similarity 203, member A" [Rattus norvegicus (taxid:10116)]

 Score = 242 (90.2 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 82/291 (28%), Positives = 145/291 (49%)

Query:     4 ELEELLGFLCSPSPS-VKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVS 62
             E+ ELL FL   + + ++ AA   V  LTG   G   L+  + +    +   ++     S
Sbjct:    26 EVAELLPFLVPGARADLQAAAAQHVLALTGVGSGRTLLAGQTALLRALIDLAVAPIPAPS 85

Query:    63 EPATEALVNLSQNSELAGKMVQ------MGMIKTAMDLLYKPDSSITRXXXXXXXXXXXX 116
               A+ ALVNL+ + +L  +M+       + +++  +D  +     +              
Sbjct:    86 RDASRALVNLAADPDLHWQMLAADPELPVRLLRCVLDPQWPWAEELAAVLANLSREPAPC 145

Query:   117 DYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILL 176
                   L+  E E++ GL   +LV + C  S  AS  P  ++G +L N+S++   R  LL
Sbjct:   146 AVLTEKLVAAEPERL-GLE--RLVSALCMPSYNASA-PLHYLGPLLSNLSQQAEVRAFLL 201

Query:   177 DPKRGLLKQIV--RQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPV 234
             DP R ++++++   Q+  S+ +R+ GV GT+RNCCFE  H  + LL     + P LLLP+
Sbjct:   202 DPDRCVVQRLLPLTQYTDSS-VRRGGVVGTLRNCCFEHRHH-KWLLGPQVDILPFLLLPL 259

Query:   235 AGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAG 285
             AG + + EE+  ++P++L   L  +++   D +IR   +E+I L+T    G
Sbjct:   260 AGPEEFSEEEMEELPVDL-QYLSPDKQREPDADIRKMLIEAIMLLTATAPG 309

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040718-228 fam203a "family with sequence similarity 203, member A" [Danio rerio (taxid:7955)]

 Score = 238 (88.8 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 79/296 (26%), Positives = 138/296 (46%)

Query:     3 NELEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENK-E 60
             +E ++LL FL       VK  A   + GLTG+ DG + L       L +L  L S+    
Sbjct:     5 DEAKDLLSFLTLEMRADVKGQATGYILGLTGNRDGCRYLQSKPDF-LKALVTLTSDPSIA 63

Query:    61 VSEPATEALVNLSQNSELAGKMV-QMGMIKTAMDLLYKPDSSITRXXXXXXXXXXXXDYG 119
             + +    AL+NLS +  L   +V +  ++   +  L  P+   +             +  
Sbjct:    64 IVKDCFHALINLSADETLHQPLVKETEILSKLIPKLQDPEFVFSDRICTILSNLSRHEQT 123

Query:   120 ISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPK 179
                + +   E   GL   +LV  FC            ++  +L N+++    R  +LD  
Sbjct:   124 CRDVFKALQELNVGLD--RLVEIFCTEGFNKKAS-LHYLAPLLSNLTQLPEARHFILDKD 180

Query:   180 RGLLKQIV--RQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN 237
             R ++++++   Q++ S   R+ GV GT+RNCCF+  H  + LL  +  + P LLLP+AG 
Sbjct:   181 RCVIQRLLPFTQYEES-ITRRGGVVGTLRNCCFDYVHH-EWLLSDAVDILPFLLLPLAGP 238

Query:   238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVN 293
             +   EE+   +P++L   L  ++   +DP+IR   LE++ L+T  + G +   S N
Sbjct:   239 EELSEEENEGLPVDL-QYLPEDKRREEDPDIRKMLLETLMLLTATKVGRQILKSKN 293

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1930628 Fam203a "family with sequence similarity 203, member A" [Mus musculus (taxid:10090)]

 Score = 233 (87.1 bits), Expect = 3.5e-19, P = 3.5e-19
 Identities = 82/293 (27%), Positives = 144/293 (49%)

Query:     4 ELEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKI--ALPSLARLLSENKE 60
             E  ELL FL       ++ AA   V  LTG+  G   L+   ++  AL  LA  ++    
Sbjct:    26 EAVELLPFLVLGARADLQAAAAQHVLALTGAGSGRTLLAGQPELLRALVDLA--VAPAPA 83

Query:    61 VSEPATEALVNLSQNSELAGKMVQMG------MIKTAMDLLYKPDSSITRXXXXXXXXXX 114
              S  A+ ALVNL+ +  +  +++         +++  +D  +                  
Sbjct:    84 PSRDASRALVNLAADPNVHWQLLAADPELPARLLRCVLDPQWPWAEEAAAVLANLSREPA 143

Query:   115 XXDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKI 174
                  +  L+  E E++ GL   +LV + C  S  A+  P  ++G +L N+S++   R  
Sbjct:   144 PCAALMEKLMAAEPERL-GLE--RLVNALCTPSYNAAA-PLHYLGPLLSNLSQQAEVRAF 199

Query:   175 LLDPKRGLLKQIV--RQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLL 232
             LLDP R ++++++   Q+  S+ +R+ GV GT+RNCCFE  H  + LL     + P LLL
Sbjct:   200 LLDPDRCVVQRLLPLTQYTDSS-VRRGGVVGTLRNCCFEHRHH-KWLLGAQVDILPFLLL 257

Query:   233 PVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAG 285
             P+AG + + EE+  ++P++L   L  +++   D +IR   +E++ L+T    G
Sbjct:   258 PLAGPEEFSEEEMDQLPVDL-QYLSPDKQREPDADIRKMLIEAVMLLTATAPG 309

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9BTY7 FAM203A "Protein FAM203A" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 9.5e-19, P = 9.5e-19
 Identities = 83/290 (28%), Positives = 139/290 (47%)

Query:     4 ELEELLGFLCSPSPS-VKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVS 62
             E+ +LL FL   + + ++ AAV  V  LTG   G   L+  + + L +L  L   +    
Sbjct:    21 EVVKLLPFLAPGARADLQAAAVRHVLALTGCGPGRALLAGQAAL-LQALMELAPASAPAR 79

Query:    63 EPATEALVNLSQNSELAGKMVQM--GMIKTAMDLLYKPDSSITRXXXXXXXXXXXXDYGI 120
             + A  ALVNL+ +  L   ++    G+    M     P                      
Sbjct:    80 D-AARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPWAEEAAAALANLSREPAPC 138

Query:   121 SSL---LQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLD 177
             ++L   L   +    GL   +LVR+ C     A   P  ++  +L N+S++ A R  LLD
Sbjct:   139 AALMAALAAAEPADSGLE--RLVRALCTPGYNARA-PLHYLAPLLSNLSQRPAARAFLLD 195

Query:   178 PKRGLLKQIV--RQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVA 235
             P R ++++++   Q+  S+ +R+ GV GT+RNCCFE  H  + LL     + P LLLP+A
Sbjct:   196 PDRCVVQRLLPLTQYPDSS-VRRGGVVGTLRNCCFEHRHH-EWLLGPEVDILPFLLLPLA 253

Query:   236 GNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAG 285
             G + + EE+  ++P++L   L  +++   D +IR   +E+I L+T    G
Sbjct:   254 GPEDFSEEEMERLPVDL-QYLPPDKQREPDADIRKMLVEAIMLLTATAPG 302

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0039417 CG6073 [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 64/285 (22%), Positives = 130/285 (45%)

Query:     5 LEELLGFLCSPSP--SVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVS 62
             ++EL+ F+  P+    +K  A+  V GLTGS +G  ++    ++ +         N+ V+
Sbjct:     4 VKELVQFM-QPNQRLDLKAVALTHVLGLTGSSEGKSAILSLDEMLMAIFGLTFDANQTVA 62

Query:    63 EPATEALVNLSQNSELAGKMVQMG-MIKTAMDLLYKPDSSITRXXXXXXXXXXXXDYGIS 121
             + A  +L+NL+   E A K+ Q+   ++    ++      IT                +S
Sbjct:    63 KDAVLSLINLTSEEEAAIKVFQLAKQLQPPFAIVEVAAKEITNEQSDLADPWSMV---LS 119

Query:   122 SLLQVED---EQIQGLY-----VMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRK 173
             +L +VE    E +  L      + +L ++F +           ++  I  N+++   GR+
Sbjct:   120 NLTRVESLVHEILDTLERDDHTLPRLAKAFAQLDYNKKKAKLHYLAPIFCNLTQVSRGRE 179

Query:   174 ILLDPKRGLLKQIV--RQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALL 231
             +    K  LL++++    F+ S  +R+ G  G ++N CF+  +    +L     +  A+L
Sbjct:   180 LCCHRKYELLEKLLPFASFEGS-VVRRGGTIGILKNVCFDTVYH-DVILNEQSSILVAIL 237

Query:   232 LPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESI 276
              P+ G + + +ED   +P+EL   L   +   +DP++R   LE +
Sbjct:   238 QPLCGPEEFSDEDNELLPIEL-QYLPESKTREEDPDLRKMLLECL 281

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G4MT06 MGG_01501 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 169 (64.5 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 69/303 (22%), Positives = 143/303 (47%)

Query:     1 MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKE 60
             M  ELEEL+GF+  P+P +++ A + +   + ++  L  + ++  +   +L  L+ ++ +
Sbjct:     1 MPTELEELVGFIAHPNPQIRQVAAENLVPYSTTDVSLFKIEEFKPVK--NLKILVRDHPK 58

Query:    61 VSEPATEALVNLSQNSELAGKMVQ-MGMIKTAMDLLYKPDSSITRXXXXXXXXXXXXDYG 119
             ++E   + LVNLS + E+   + +    ++     +  P+                 D  
Sbjct:    59 IAEHIIKILVNLSADQEILENLAKDEKFLEAIFARIVDPEEPNANLIAMLLANLAKSDSI 118

Query:   120 ISSLL---QVEDEQI--QGLYVMKLVRSFCRSSSEASDDP--FEHVGSILVNISKKEAGR 172
                LL   Q   E +    L + +L   F + +  + +    ++++  +  ++SK    R
Sbjct:   119 KDPLLAKKQPASETLGSDDLVINQLFDLFVKGADGSYNKHANYDYLAYLFADLSKHADVR 178

Query:   173 KILLDPKR--GL-----LKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEF 225
             + +L  ++  G+     L+    +  +++ +R++GV+ TI+N  F+ +     LL   E 
Sbjct:   179 RHMLTAQKYDGVVPITKLRVFTNEETTASDVRRRGVASTIKNVAFDVDSH-PRLLDDGEI 237

Query:   226 -LWPALLLPVAGNKVYKEEDTSK-IP-LELASALRIEREPVDDPEIRIQALESIYLITLQ 282
              + P LLLP+ G++ Y EED  + +P L+L    + +REP  D  I    LE++ L+T  
Sbjct:   238 NVLPYLLLPIMGDEDYDEEDMLEMLPDLQLLPPGK-KREP--DSNIVQTHLETLSLLTTT 294

Query:   283 EAG 285
               G
Sbjct:   295 RKG 297

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q297A7 GA19338 "FAM203 family protein GA19338" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 165 (63.1 bits), Expect = 7.9e-10, P = 7.9e-10
 Identities = 60/284 (21%), Positives = 127/284 (44%)

Query:     5 LEELLGFLCSPSP--SVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVS 62
             + EL+ F+  P+    +K  A+  V GLTGS +G  ++     + +        +N  V+
Sbjct:     4 VSELVQFM-QPNQRLDLKAVALTHVLGLTGSAEGKAAILALDDMLMAIFGLTFDDNHTVA 62

Query:    63 EPATEALVNLSQNSELAGKMVQMG--------MIKTAMDLLYKPDSSITRXXXXXXXXXX 114
             + A  +L+NL+ + E A K+  +         +++ A   +    S +            
Sbjct:    63 KDAVLSLINLTADEECATKVFHLAKRIQPPFAIVEVAATQISDEQSPLADPWSMVLSNLT 122

Query:   115 XXDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKI 174
               +  +  +L + +   Q L   +L ++F +           ++  I  N+++   GR++
Sbjct:   123 RVESLVHEILDILERGEQTL--PRLAKAFAQLDYNKKKARLHYLAPIFCNLTQVARGREL 180

Query:   175 LLDPKRGLLKQIVRQFDS--SNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLL 232
                 +  LL++++  F S   N +R+ G  G ++N CF+A +    +L   + +  A+L 
Sbjct:   181 CCHARYQLLEKLL-PFASYEENVVRRGGTIGILKNVCFDAVYH-GVILGEDDNILVAILQ 238

Query:   233 PVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESI 276
             P+ G + + +E+   +P+EL   L   +    DP++R   LE +
Sbjct:   239 PLCGPEEFSDEENDMLPIEL-QYLPESKTRETDPDLRKMLLECL 281

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC26F1.12c SPAC26F1.12c "conserved eukaryotic protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 145 (56.1 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 66/295 (22%), Positives = 131/295 (44%)

Query:     3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIA-LPSLARLLSENKEV 61
             +EL EL+GFL   +P V+  AV  +   T       S+  ++    +  L  LL +  ++
Sbjct:     2 SELIELVGFLHDQNPQVRMLAVQHLLPYTARNHPQFSIWFHNDFEPVKDLKALLKDKPQI 61

Query:    62 SEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRXXXXXX-XXXXXXDYGI 120
             +  A  ALVN+SQN ++   ++    ++    ++  P   +               D+  
Sbjct:    62 ASQAVTALVNVSQNEKVRKVLMDDEFLQLIFSIVTNPLHGLADLSCMLLCNLAKEEDFAR 121

Query:   121 SSLLQV--EDEQIQGLYVMKLVRSFCRSSSEASDD--PFEHVGSILVNISKKEAGRKIL- 175
                +QV   +  +    + +L+  F + +    ++   F+ + ++  ++++ E GRK   
Sbjct:   122 ILDMQVPLREFSLSKNIIDQLMDLFVKGTDHGINEYANFDFLANVFADMTRFERGRKYFT 181

Query:   176 -LDPKRGLL--KQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFL--WPAL 230
              L     ++   ++V   +  + LR+ GV+  I+N  F+     Q +L+  E +   P L
Sbjct:   182 TLQEYDHVIPASKLVVFTEHKSLLRRTGVAAIIKNISFDIP--FQKVLMDEEGINVLPYL 239

Query:   231 LLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAG 285
             LLP+AG +   EED   +  EL   L  +++   D  I    +E++ L+T    G
Sbjct:   240 LLPLAGPEELSEEDMDGMFDEL-QLLPDDKKREPDHFIMKTLVETLVLLTATREG 293

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0008150 "biological_process" evidence=ND

CGD|CAL0002914 HGH1 [Candida albicans (taxid:5476)]

 Score = 139 (54.0 bits), Expect = 7.9e-07, P = 7.9e-07
 Identities = 72/306 (23%), Positives = 138/306 (45%)

Query:     1 MANELEELLGFLCSPSPSVKKAAVDIVRGL-TGSEDGLQSLSKYSKIA-LPSLARLLSEN 58
             M  ELEEL+ FL SP P+V + A+D + G  TG    + S + Y  I  L ++++  S  
Sbjct:     1 MPTELEELVSFLHSPQPAVSQIALDNLVGYSTGPHQKVFSYNNYEAIKDLKNISK--SNG 58

Query:    59 KEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRXXXXXXXXXXXXDY 118
             K +   +   L NL  +  +   +V+       + +      +               + 
Sbjct:    59 KTLVNQSVTILANLCDDLVMRKLIVEDEEYLKYLAIQIINIKNTNADLMCILLTNLAKND 118

Query:   119 GISSLLQVE---DEQIQGLYVMK---------LVRSFCRSSSEASDDPFEHVGSILVNIS 166
              I+ +L  E   D++ + ++  K          V+ + R  +E ++  ++++     ++S
Sbjct:   119 AINKVLDFEVELDDEHKKVFSSKKVIDCLMDCFVKGYDRKLNEYAN--YDYLSYFFADLS 176

Query:   167 KKEAGRKILL-----DPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLL 221
             + + GR   +     D    L K +V      + +R++GV+ TI+N  F+    ++ L  
Sbjct:   177 RYKQGRTYFITEQSYDEVVPLSKVLVFTEKYDDKIRREGVASTIKNSLFDTNAHMKLLTD 236

Query:   222 ISEFLWPALLLPVAGNKVYKEEDTSKIP--LELASALRIEREPVDDPEIRIQALESIYLI 279
                 L P +LLP+AG +   E++   +P  L+L  + + +REP+    I    LES+ L+
Sbjct:   237 PKINLLPFILLPLAGPEEIDEDEMFDLPEELQLLPSDK-KREPLSG--ILCIHLESLLLL 293

Query:   280 -TLQEA 284
              T +EA
Sbjct:   294 CTTREA 299

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
pfam04063	190	pfam04063, DUF383, Domain of unknown function (DUF	4e-48
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-08

>gnl|CDD|217868 pfam04063, DUF383, Domain of unknown function (DUF383)

 Score =  159 bits (404), Expect = 4e-48
 Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 12/191 (6%)

Query: 92  MDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQ-----GLYVMKLVRSFCRS 146
           +D +  P + +  L+ MLL NLT+ D    SLL ++ E  +        + +L+  F + 
Sbjct: 1   VDKITDPKNPLADLICMLLSNLTKSDSICRSLLNLKREAPKEVSSSANAIDQLMDCFVKG 60

Query: 147 SSEA--SDDPFEHVGSILVNISKKEAGRKILLDPKRGL----LKQIVRQFDSSNYLRKKG 200
           +  +      F+++  +  N+SK E GRK  L P+       L +++   +  + +R+ G
Sbjct: 61  ADGSYNKKANFDYLAYLFANLSKFEEGRKYFLTPQEYDGVVPLSKLLVFTEHESTIRRGG 120

Query: 201 VSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIER 260
           V+ TI+NCCF+  H    L      + P LLLP+AG +   EE+  K+P EL   L  ++
Sbjct: 121 VASTIKNCCFDISHHPWLLSDEEVNILPYLLLPLAGPEELDEEEMEKLPPELQ-LLPPDK 179

Query: 261 EPVDDPEIRIQ 271
           E   DP+IR  
Sbjct: 180 EREPDPDIRKM 190

Length = 190

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 2   ANELEELLGFLCSPSPSVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLL-SENK 59
           A  L  L+  L S   +V++ A   +  L+ G+ D +Q++ +     LP+L +LL SE++
Sbjct: 6   AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAG--GLPALVQLLKSEDE 63

Query: 60  EVSEPATEALVNLSQNSELAGKMV-QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ 115
           EV + A  AL NL+   E    +V + G +   ++LL   +  I +     L NL  
Sbjct: 64  EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
KOG2973	353	consensus Uncharacterized conserved protein [Funct	100.0
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.25
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.2
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.13
PF04064	58	DUF384: Domain of unknown function (DUF384); Inter	98.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	98.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	98.9
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.77
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.73
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.68
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.68
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.53
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	98.47
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.36
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	98.15
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.14
KOG1048	717	consensus Neural adherens junction protein Plakoph	97.51
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	97.11
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	96.82
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	96.81
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	96.73
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	96.7
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.58
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	96.5
PTZ00429	746	beta-adaptin; Provisional	96.27
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.26
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.22
PF05536	543	Neurochondrin: Neurochondrin	96.21
KOG2973	353	consensus Uncharacterized conserved protein [Funct	96.17
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	95.74
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	95.69
KOG1048	717	consensus Neural adherens junction protein Plakoph	95.59
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.5
KOG1293	678	consensus Proteins containing armadillo/beta-caten	95.5
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	95.43
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	95.3
KOG2734	536	consensus Uncharacterized conserved protein [Funct	95.15
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.07
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.04
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	94.71
PTZ00429	746	beta-adaptin; Provisional	94.53
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	94.22
PRK09687	280	putative lyase; Provisional	93.86
KOG4646	173	consensus Uncharacterized conserved protein, conta	93.74
PRK09687	280	putative lyase; Provisional	93.53
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	93.47
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	93.09
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	92.78
KOG4199	461	consensus Uncharacterized conserved protein [Funct	92.76
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	92.72
PF05536	543	Neurochondrin: Neurochondrin	92.2
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	92.13
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	91.03
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	90.71
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	90.22
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	89.83
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	89.74
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	89.73
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	88.85
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	87.99
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	87.94
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	87.87
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	87.59
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	87.39
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	87.3
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	87.25
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	86.9
KOG4199	461	consensus Uncharacterized conserved protein [Funct	86.4
PF09450	106	DUF2019: Domain of unknown function (DUF2019); Int	86.24
COG5096	757	Vesicle coat complex, various subunits [Intracellu	86.11
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	84.75
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	84.1
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	82.32
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	81.45
PF14838	696	INTS5_C: Integrator complex subunit 5 C-terminus	81.43
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	81.27
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	80.98

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.2e-79  Score=564.21  Aligned_cols=299  Identities=40%  Similarity=0.584  Sum_probs=276.5

Q ss_pred             CcchHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhHHH
Q 048744            1 MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAG   80 (312)
Q Consensus         1 m~~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~   80 (312)
                      |.+++.||++||++++|+||+.|+++++|||+.  +-+.++++....+++|..|..+..+ +.+|+++|||+|+++.+++
T Consensus         1 m~s~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~   77 (353)
T KOG2973|consen    1 MTSELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRK   77 (353)
T ss_pred             CchHHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHH
Confidence            889999999999999999999999999999999  4445565544689999999999855 8999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS  160 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~  160 (312)
                      .|++. ++..+|+++.||.+++||.+||+|+|||+.+.++..+++...++.. ..+++|+..|+..+++ +.+++||+|+
T Consensus        78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~-~~lm~l~~~~~d~~~n-~~a~f~ylA~  154 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKD-SGLMRLARAFCDKSYN-AYAEFHYLAP  154 (353)
T ss_pred             HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccc-cchHHHHHHHhCcccc-cccchhHHHH
Confidence            99988 9999999999999999999999999999999999988877654322 3589999999999888 7789999999


Q ss_pred             HHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCCC
Q 048744          161 ILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVY  240 (312)
Q Consensus       161 vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~  240 (312)
                      ||+|+||.+.||.||+++++.+.++++||.+++|.+||+||||||||||||+..|. +++..++++|||||+||||||+|
T Consensus       155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCcccc
Confidence            99999999999999999999899999999889999999999999999999999995 88888899999999999999999


Q ss_pred             ChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHHHHHhCCcchhccccccCCCC
Q 048744          241 KEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHGSGTEDPS  307 (312)
Q Consensus       241 ~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~~lr~~~vy~vlr~~~~~e~~  307 (312)
                      |||||++||++|| |++.+|+||+||+||+|++|||++||+|+.||++||++|||+|+|+.|+.|++
T Consensus       234 sEEdm~~LP~eLQ-yLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~d  299 (353)
T KOG2973|consen  234 SEEDMAKLPVELQ-YLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEED  299 (353)
T ss_pred             CHHHHhcCCHhhh-cCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCc
Confidence            9999999999999 58877777789999999999999999999999999999999999999988754

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=100.00  E-value=5.5e-58  Score=405.35  Aligned_cols=178  Identities=35%  Similarity=0.613  Sum_probs=164.5

Q ss_pred             HHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhh---------hhhhhhHHHHHHHHhcCCCC--CCCCchhhHHH
Q 048744           92 MDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDE---------QIQGLYVMKLVRSFCRSSSE--ASDDPFEHVGS  160 (312)
Q Consensus        92 v~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e---------~~~~~~l~~Ll~~f~~~~~~--~~~~~~~~la~  160 (312)
                      |+.|.++++++||++||||||||+.++|+.++++.+.+         ..+++++.+|+++|++|...  +++++|||+|+
T Consensus         1 v~~i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~   80 (192)
T PF04063_consen    1 VSYITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLAS   80 (192)
T ss_pred             CCeecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHH
Confidence            46789999999999999999999999999999999876         35677899999999996543  46789999999


Q ss_pred             HHHhhcCChhhhhhhcccccch--hhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhc-cChhhhhhhcccCC
Q 048744          161 ILVNISKKEAGRKILLDPKRGL--LKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLIS-EFLWPALLLPVAGN  237 (312)
Q Consensus       161 vl~NlS~~~~gR~~~l~~~~~~--l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~-~~~lp~lLlPlaG~  237 (312)
                      ||+|+||+|+||+||++++++.  +++|+||++|+|.+||+||||||||||||.+.|+ |+|+++ +++|||||+|||||
T Consensus        81 vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~-~LL~~~~~~iLp~LLlPLaGp  159 (192)
T PF04063_consen   81 VLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHE-WLLSDDEVDILPYLLLPLAGP  159 (192)
T ss_pred             HHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHH-HhcCchhhhhHHHHHhhccCC
Confidence            9999999999999999999876  9999999999999999999999999999999995 888887 89999999999999


Q ss_pred             CCCChhhhccCcHHhhhhhccCCCCCCChHHHHH
Q 048744          238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQ  271 (312)
Q Consensus       238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~  271 (312)
                      ||||+||+++||++|| +++++|+||+||+||+|
T Consensus       160 Ee~d~ee~~~lp~~LQ-~L~~dK~RE~d~~ir~m  192 (192)
T PF04063_consen  160 EELDEEEMEKLPPELQ-LLPPDKKREPDPDIRKM  192 (192)
T ss_pred             CcCCHHHHHcCCHHHh-hcCCCCccCCCcchhcC
Confidence            9999999999999999 58888888889999986

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.25  E-value=3.4e-10  Score=127.22  Aligned_cols=256  Identities=16%  Similarity=0.163  Sum_probs=196.0

Q ss_pred             hHHHHHhccCCC--CHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHH
Q 048744            4 ELEELLGFLCSP--SPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELA   79 (312)
Q Consensus         4 ~l~ELv~FL~~~--~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~   79 (312)
                      ++..||+=|+++  .++.|..|+..|+.++.. +++|..|.... +++|.|+.+++.+ ..+..+|+.+|.|||.++..+
T Consensus        14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~a-GaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk   92 (2102)
T PLN03200         14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHS-QAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLR   92 (2102)
T ss_pred             HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHcc-CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence            577888888865  899999999999999988 66788886654 7899999999766 788899999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc--cch-HHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCc--
Q 048744           80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD--YGI-SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDP--  154 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~--~~~-~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~--  154 (312)
                      ..|+..|+|+.+++.+.+.+......|++.|.+|+...  +.. .+++-.     .| .++.|++++..|.   +.+.  
T Consensus        93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~-----~G-aVp~Lv~lL~~gs---k~d~~L  163 (2102)
T PLN03200         93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFST-----EG-VVPSLWDQLQPGN---KQDKVV  163 (2102)
T ss_pred             HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhh-----cC-ChHHHHHHHhCCc---hhhHHH
Confidence            99998899999999999888888889999999999874  222 122211     22 4889999988874   2222  


Q ss_pred             hhhHHHHHHhhcCChhhhh-hhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhc
Q 048744          155 FEHVGSILVNISKKEAGRK-ILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLP  233 (312)
Q Consensus       155 ~~~la~vl~NlS~~~~gR~-~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlP  233 (312)
                      -.+...+|.||+..++++. .+++.+  .+..++..+.++++.-+..++.++-+.|+..+.....++.  ...+|.+   
T Consensus       164 ~~~Av~AL~nLs~~~en~~~~IIeaG--aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe--aGaVP~L---  236 (2102)
T PLN03200        164 EGLLTGALRNLCGSTDGFWSATLEAG--GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD--AGAVKQL---  236 (2102)
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH--CCCHHHH---
Confidence            2455789999999999985 556654  6777777777788888888999998888875544323332  2334444   


Q ss_pred             ccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhcc
Q 048744          234 VAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVH  299 (312)
Q Consensus       234 laG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr  299 (312)
                                        +++ +..    ..++.+|...+-+|..||+ +.+-|+.+++.|+.+.|-
T Consensus       237 ------------------V~L-L~s----g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI  280 (2102)
T PLN03200        237 ------------------LKL-LGQ----GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALI  280 (2102)
T ss_pred             ------------------HHH-Hcc----CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHH
Confidence                              331 211    1267899999999999998 578888888888877443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.20  E-value=1.4e-09  Score=113.07  Aligned_cols=272  Identities=21%  Similarity=0.252  Sum_probs=185.0

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhh
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMV   83 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~   83 (312)
                      +.-|+.+|.+.+.++.-.|+..|--+|...+|+..+.+.  ++++.|++++..+ ......|+.+|.|||.|+.++..++
T Consensus       292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~--giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV  369 (708)
T PF05804_consen  292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES--GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMV  369 (708)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc--CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            667999999999999999999999999999999998764  6999999999877 7789999999999999999999999


Q ss_pred             hhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHH
Q 048744           84 QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILV  163 (312)
Q Consensus        84 ~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~  163 (312)
                      +.|+|+.++..+.+++.  ...+..+|.|||..+++. .++...+      .++.+++++..+..+.-  ..+ +..++.
T Consensus       370 ~~GlIPkLv~LL~d~~~--~~val~iLy~LS~dd~~r-~~f~~Td------cIp~L~~~Ll~~~~~~v--~~e-liaL~i  437 (708)
T PF05804_consen  370 SLGLIPKLVELLKDPNF--REVALKILYNLSMDDEAR-SMFAYTD------CIPQLMQMLLENSEEEV--QLE-LIALLI  437 (708)
T ss_pred             HCCCcHHHHHHhCCCch--HHHHHHHHHHhccCHhhH-HHHhhcc------hHHHHHHHHHhCCCccc--cHH-HHHHHH
Confidence            99999999999987654  456899999999999754 4555432      36788888777643321  122 568888


Q ss_pred             hhcCChhhhhhhccccc-------------chhhhhhhccc-CC----------------------chhhHhhHHHHHHh
Q 048744          164 NISKKEAGRKILLDPKR-------------GLLKQIVRQFD-SS----------------------NYLRKKGVSGTIRN  207 (312)
Q Consensus       164 NlS~~~~gR~~~l~~~~-------------~~l~~ll~~~~-~~----------------------s~iRR~gva~~ikN  207 (312)
                      |+|..++.-+.+++.+.             .++.+++.-+. |+                      +.-----++||+.|
T Consensus       438 NLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaN  517 (708)
T PF05804_consen  438 NLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILAN  517 (708)
T ss_pred             HHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence            99988888888876431             01111222111 11                      11222234555555


Q ss_pred             hhccchhhhHHHhhhccChhhhhhhcccCCCCCChhhhc----------cCcHHhh-----------h-hhccCCCCCCC
Q 048744          208 CCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTS----------KIPLELA-----------S-ALRIEREPVDD  265 (312)
Q Consensus       208 ccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~----------~lp~~Lq-----------~-~l~~~re~e~d  265 (312)
                      .-+....-  ..+..+.+++|+|---|..+-  +++|.-          ..-+...           + -+=+.|+.  |
T Consensus       518 L~~~~ld~--~~ll~~~~llp~L~~~L~~g~--~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe--D  591 (708)
T PF05804_consen  518 LTIPDLDW--AQLLQEYNLLPWLKDLLKPGA--SEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE--D  591 (708)
T ss_pred             cccCCcCH--HHHHHhCCHHHHHHHHhCCCC--CChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc--h
Confidence            55432211  223334578887544332211  122210          0111110           0 01134554  9


Q ss_pred             hHHHHHHHHHHHHHhcCHhHHHHH-HhCCcch
Q 048744          266 PEIRIQALESIYLITLQEAGLRAF-WSVNGPR  296 (312)
Q Consensus       266 ~~Ir~~llE~Ll~L~~t~~gR~~l-r~~~vy~  296 (312)
                      .++-..++-++++|.....+|+.+ ++-++..
T Consensus       592 dE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~  623 (708)
T PF05804_consen  592 DEIVLQILYVFYQLLFHEETREVLLKETEIPA  623 (708)
T ss_pred             HHHHHHHHHHHHHHHcChHHHHHHHhccchHH
Confidence            999999999999999999999976 5455444

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.13  E-value=2.4e-09  Score=120.57  Aligned_cols=256  Identities=15%  Similarity=0.135  Sum_probs=182.1

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      .++-|++||+++++++|..|+..+-.++.. ++++..|...  +.|+.|+.+++.+ ..+.++|+.+|-|+|.++.-...
T Consensus       447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIiea--GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~  524 (2102)
T PLN03200        447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAA--GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA  524 (2102)
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence            478899999999999999999999888864 6678777754  6899999999887 88999999999999987655555


Q ss_pred             hh-hhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccc--hHHHhhhh----------------------hh------h
Q 048744           82 MV-QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYG--ISSLLQVE----------------------DE------Q  130 (312)
Q Consensus        82 l~-~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~--~~~ll~~~----------------------~e------~  130 (312)
                      ++ +.|+|+.+++.+.+++......++..|+||+...+.  +..+....                      ..      +
T Consensus       525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g  604 (2102)
T PLN03200        525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG  604 (2102)
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence            55 569999999999998888889999999999754321  11111110                      00      0


Q ss_pred             --hhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhh-hhhhcccccchhhhhhhcccCCchhhHhhHHHHHHh
Q 048744          131 --IQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAG-RKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRN  207 (312)
Q Consensus       131 --~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~g-R~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikN  207 (312)
                        ..| .++.|++++..+..    ..+...+.+++|++..... +..+++.+  .+..++..+.+.+..+|+.++.+|-|
T Consensus       605 ~~~~g-gL~~Lv~LL~sgs~----~ikk~Aa~iLsnL~a~~~d~~~avv~ag--aIpPLV~LLss~~~~v~keAA~AL~n  677 (2102)
T PLN03200        605 SAAND-ALRTLIQLLSSSKE----ETQEKAASVLADIFSSRQDLCESLATDE--IINPCIKLLTNNTEAVATQSARALAA  677 (2102)
T ss_pred             hhccc-cHHHHHHHHcCCCH----HHHHHHHHHHHHHhcCChHHHHHHHHcC--CHHHHHHHHhcCChHHHHHHHHHHHH
Confidence              001 36677777776643    3466778899998764433 55666553  56666666666777788889999999


Q ss_pred             hhccchhhhHHHhhhccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHH
Q 048744          208 CCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLR  287 (312)
Q Consensus       208 ccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~  287 (312)
                      ..-....+ +..-.-+.+.+|.|+-.|-                         .  +|.+++...+++|..++...+|+.
T Consensus       678 L~~~~~~~-q~~~~v~~GaV~pL~~LL~-------------------------~--~d~~v~e~Al~ALanLl~~~e~~~  729 (2102)
T PLN03200        678 LSRSIKEN-RKVSYAAEDAIKPLIKLAK-------------------------S--SSIEVAEQAVCALANLLSDPEVAA  729 (2102)
T ss_pred             HHhCCCHH-HHHHHHHcCCHHHHHHHHh-------------------------C--CChHHHHHHHHHHHHHHcCchHHH
Confidence            88543332 1111122334444422221                         1  278999999999999999999998


Q ss_pred             HHHhCCcch
Q 048744          288 AFWSVNGPR  296 (312)
Q Consensus       288 ~lr~~~vy~  296 (312)
                      .+...|+.+
T Consensus       730 ei~~~~~I~  738 (2102)
T PLN03200        730 EALAEDIIL  738 (2102)
T ss_pred             HHHhcCcHH
Confidence            777555544

>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function

Probab=98.97  E-value=1.6e-10  Score=83.02  Aligned_cols=33  Identities=6%  Similarity=0.037  Sum_probs=31.1

Q ss_pred             HHHHHhcCHhHHHHHHhCCcchhccccccCCCC
Q 048744          275 SIYLITLQEAGLRAFWSVNGPRLVHGSGTEDPS  307 (312)
Q Consensus       275 ~Ll~L~~t~~gR~~lr~~~vy~vlr~~~~~e~~  307 (312)
                      ||++||+|++||++||++|||+|||++|..|+.
T Consensus         1 ~LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d   33 (58)
T PF04064_consen    1 ALLLLCATREGREYLREKGVYPILRELHKWEED   33 (58)
T ss_pred             CHhHHhccHHHHHHHHHcCchHHHHHHHhccCC
Confidence            689999999999999999999999999998864

It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=1.6e-08  Score=96.53  Aligned_cols=217  Identities=18%  Similarity=0.271  Sum_probs=167.8

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      .++-||+.+++.+++||..+...+-....+..+|..+.+..+.++++|+.|..++ ..+.-.|-.+|-||++|.+....+
T Consensus       209 ~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ei  288 (550)
T KOG4224|consen  209 GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREI  288 (550)
T ss_pred             CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHH
Confidence            4678999999999999999999998888888899988887667999999999999 788999999999999999999999


Q ss_pred             hhhhHHHHHHHHHcCCCCh--hHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH
Q 048744           83 VQMGMIKTAMDLLYKPDSS--ITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS  160 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~~~~~--~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~  160 (312)
                      ++.|.++.+++.+++|--+  +++-+|  +-|++-++-+..-+.+.      | ++.+|++.+.-++.+.  ..+| ..+
T Consensus       289 v~ag~lP~lv~Llqs~~~plilasVaC--IrnisihplNe~lI~da------g-fl~pLVrlL~~~dnEe--iqch-Avs  356 (550)
T KOG4224|consen  289 VEAGSLPLLVELLQSPMGPLILASVAC--IRNISIHPLNEVLIADA------G-FLRPLVRLLRAGDNEE--IQCH-AVS  356 (550)
T ss_pred             HhcCCchHHHHHHhCcchhHHHHHHHH--HhhcccccCcccceecc------c-chhHHHHHHhcCCchh--hhhh-HHH
Confidence            9999999999999887765  444444  57888888665544443      3 4789999998886542  2333 458


Q ss_pred             HHHhhcC-ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCC
Q 048744          161 ILVNISK-KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNK  238 (312)
Q Consensus       161 vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~e  238 (312)
                      +|-|+.. ....+..|...+  -++++....-..+..-|.-+-++|--+++..... ..++.  .+++| +|.|.-|.+
T Consensus       357 tLrnLAasse~n~~~i~esg--Ai~kl~eL~lD~pvsvqseisac~a~Lal~d~~k-~~lld--~gi~~-iLIp~t~s~  429 (550)
T KOG4224|consen  357 TLRNLAASSEHNVSVIRESG--AIPKLIELLLDGPVSVQSEISACIAQLALNDNDK-EALLD--SGIIP-ILIPWTGSE  429 (550)
T ss_pred             HHHHHhhhhhhhhHHHhhcC--chHHHHHHHhcCChhHHHHHHHHHHHHHhccccH-HHHhh--cCCcc-eeecccCcc
Confidence            9999987 777888888765  4666555443355556778888888888876665 23333  34555 456777754

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=9.4e-08  Score=91.38  Aligned_cols=256  Identities=18%  Similarity=0.174  Sum_probs=199.4

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      .++.|..+-++...-||..|+.+|+.+|.+.++|+.+...  +.+|-|+.+++.+ ..+..-+-+++-|+..|...++.|
T Consensus       168 aL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~a--G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L  245 (550)
T KOG4224|consen  168 ALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHA--GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL  245 (550)
T ss_pred             chhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhcc--CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence            3566777556788899999999999999999999988653  6799999999888 888999999999999999999999


Q ss_pred             hhhh--HHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH
Q 048744           83 VQMG--MIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS  160 (312)
Q Consensus        83 ~~~~--~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~  160 (312)
                      ++.+  .|+.+++...++.+...-.|.-.|-||+...+....+.+.+       .++-|++++ ++.+.     -+-+++
T Consensus       246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag-------~lP~lv~Ll-qs~~~-----plilas  312 (550)
T KOG4224|consen  246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAG-------SLPLLVELL-QSPMG-----PLILAS  312 (550)
T ss_pred             HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcC-------CchHHHHHH-hCcch-----hHHHHH
Confidence            9874  99999999999999888888999999998888766666654       377888887 33221     234566


Q ss_pred             HH--HhhcCChhhhhhhcccccchhhhhhhcccC-CchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744          161 IL--VNISKKEAGRKILLDPKRGLLKQIVRQFDS-SNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN  237 (312)
Q Consensus       161 vl--~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~-~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~  237 (312)
                      |+  .|+|-.|-.--.+.+.+  +++-|+..+.. +|..-+-.+++|+||++=.++... ..+-.+..+...+-|-+-||
T Consensus       313 VaCIrnisihplNe~lI~dag--fl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~-~~i~esgAi~kl~eL~lD~p  389 (550)
T KOG4224|consen  313 VACIRNISIHPLNEVLIADAG--FLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNV-SVIRESGAIPKLIELLLDGP  389 (550)
T ss_pred             HHHHhhcccccCcccceeccc--chhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhh-HHHhhcCchHHHHHHHhcCC
Confidence            65  57998888777777754  66666665543 566567789999999998777663 55554544444444444442


Q ss_pred             CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHHHHHhCCcchhccccccCC
Q 048744          238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHGSGTED  305 (312)
Q Consensus       238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~~lr~~~vy~vlr~~~~~e  305 (312)
                                                  -.+|..+--|+-+|+-...-|+++-.-|..++|=.|--+|
T Consensus       390 ----------------------------vsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~  429 (550)
T KOG4224|consen  390 ----------------------------VSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSE  429 (550)
T ss_pred             ----------------------------hhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCcc
Confidence                                        3345566678888999999999999999999999997765

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.77  E-value=2.3e-07  Score=93.87  Aligned_cols=243  Identities=18%  Similarity=0.255  Sum_probs=166.0

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      -.+.|...|.++++.||+.|+..|..+....++...+.... ++++.++.++++. ..+++.|..+|.+++..+...+.+
T Consensus        78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~-~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l  156 (503)
T PF10508_consen   78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN-ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL  156 (503)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc-cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence            35678889999999999999999888776666655555443 7899999999998 899999999999999998888888


Q ss_pred             hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHH
Q 048744           83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSIL  162 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl  162 (312)
                      .+.+.+..+...+..+++...=-+..+++++++......   +.-..  .| .+.+++..+... +---  ... ..-++
T Consensus       157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~---~~~~~--sg-ll~~ll~eL~~d-DiLv--qln-alell  226 (503)
T PF10508_consen  157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA---EAVVN--SG-LLDLLLKELDSD-DILV--QLN-ALELL  226 (503)
T ss_pred             hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH---HHHHh--cc-HHHHHHHHhcCc-cHHH--HHH-HHHHH
Confidence            888778888888877666666678899999987764332   22211  23 356777766552 2100  122 34889


Q ss_pred             HhhcCChhhhhhhcccccchhhhhhhccc--CCch-hhHhhHHHHHH---hhhccchhhhHHHhhhccChhhhhhhcccC
Q 048744          163 VNISKKEAGRKILLDPKRGLLKQIVRQFD--SSNY-LRKKGVSGTIR---NCCFEAEHQLQNLLLISEFLWPALLLPVAG  236 (312)
Q Consensus       163 ~NlS~~~~gR~~~l~~~~~~l~~ll~~~~--~~s~-iRR~gva~~ik---NccF~~~~H~~~ll~~~~~~lp~lLlPlaG  236 (312)
                      ..++..+.|++|+.+.  |++++|...+.  ..++ .+.--+.|.+|   |.+.-   ++..++.    ..|.++--   
T Consensus       227 ~~La~~~~g~~yL~~~--gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~~v~~----~~p~~~~~---  294 (503)
T PF10508_consen  227 SELAETPHGLQYLEQQ--GIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQEVLE----LYPAFLER---  294 (503)
T ss_pred             HHHHcChhHHHHHHhC--CHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChHHHHH----HHHHHHHH---
Confidence            9999999999999886  47777776542  2333 34444445442   22221   1111221    11111100   


Q ss_pred             CCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHHHH
Q 048744          237 NKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAF  289 (312)
Q Consensus       237 ~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~~l  289 (312)
                                 +       .+.-..  .|+.++...+||+=.+|+|.+|++.|
T Consensus       295 -----------l-------~~~~~s--~d~~~~~~A~dtlg~igst~~G~~~L  327 (503)
T PF10508_consen  295 -----------L-------FSMLES--QDPTIREVAFDTLGQIGSTVEGKQLL  327 (503)
T ss_pred             -----------H-------HHHhCC--CChhHHHHHHHHHHHHhCCHHHHHHH
Confidence                       0       111111  39999999999999999999999988

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.73  E-value=2e-07  Score=97.18  Aligned_cols=184  Identities=17%  Similarity=0.166  Sum_probs=147.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHHH
Q 048744           15 PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMD   93 (312)
Q Consensus        15 ~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv~   93 (312)
                      .+.++-+.|+..|+.++.+......+.+.  ++++.|++++..+ ....-.++++|-+||-..+.++.+++.|+|+.++.
T Consensus       261 kQeqLlrv~~~lLlNLAed~~ve~kM~~~--~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~k  338 (708)
T PF05804_consen  261 KQEQLLRVAFYLLLNLAEDPRVELKMVNK--GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLK  338 (708)
T ss_pred             HHHHHHHHHHHHHHHHhcChHHHHHHHhc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHH
Confidence            34566668899999999888777666543  7899999999877 77788899999999999999999999999999999


Q ss_pred             HHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhh
Q 048744           94 LLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRK  173 (312)
Q Consensus        94 ~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~  173 (312)
                      .+..++....+.+.++|.|||-....+.+|.+.+       .+++|+..+..+.      ...+.-.+|.|+|...++|.
T Consensus       339 Ll~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~G-------lIPkLv~LL~d~~------~~~val~iLy~LS~dd~~r~  405 (708)
T PF05804_consen  339 LLPSENEDLVNVALRLLFNLSFDPELRSQMVSLG-------LIPKLVELLKDPN------FREVALKILYNLSMDDEARS  405 (708)
T ss_pred             HhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCC-------CcHHHHHHhCCCc------hHHHHHHHHHHhccCHhhHH
Confidence            9998888899999999999999999888888865       3789998886542      24567899999999999999


Q ss_pred             hhcccccchhhhhhhcc-cCCchhhHhhHHHHHHhhhccchhh
Q 048744          174 ILLDPKRGLLKQIVRQF-DSSNYLRKKGVSGTIRNCCFEAEHQ  215 (312)
Q Consensus       174 ~~l~~~~~~l~~ll~~~-~~~s~iRR~gva~~ikNccF~~~~H  215 (312)
                      .|...+  .++.++-.+ +.++..-...+++.+.|||-+..+-
T Consensus       406 ~f~~Td--cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna  446 (708)
T PF05804_consen  406 MFAYTD--CIPQLMQMLLENSEEEVQLELIALLINLALNKRNA  446 (708)
T ss_pred             HHhhcc--hHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH
Confidence            887664  344444322 2233323456889999999886654

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.68  E-value=9.3e-07  Score=81.96  Aligned_cols=161  Identities=24%  Similarity=0.251  Sum_probs=127.5

Q ss_pred             cchHHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHH
Q 048744            2 ANELEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELA   79 (312)
Q Consensus         2 ~~~l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~   79 (312)
                      +.+++.|+.+|. ...|-++..|+-.+-..++.+.+++.|...  +.++-+..++.++ +.+...|+.+|.|+|.+.+..
T Consensus        11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~--Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDL--GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHc--CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            467999999999 468999999999999998889898888764  6799999999998 889999999999999998888


Q ss_pred             HHhhhhhHHHHHHHHHcC-C-CChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744           80 GKMVQMGMIKTAMDLLYK-P-DSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH  157 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~-~-~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~  157 (312)
                      ..+-  .+|..+++.+.. + ++..--.+..+|.|||..+.....+..         +++.++.++..|+..   . -.+
T Consensus        89 ~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---------~i~~ll~LL~~G~~~---~-k~~  153 (254)
T PF04826_consen   89 EQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---------YIPDLLSLLSSGSEK---T-KVQ  153 (254)
T ss_pred             HHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---------hHHHHHHHHHcCChH---H-HHH
Confidence            7763  466666664433 2 455555678999999988875433221         478899999998543   2 245


Q ss_pred             HHHHHHhhcCChhhhhhhcccc
Q 048744          158 VGSILVNISKKEAGRKILLDPK  179 (312)
Q Consensus       158 la~vl~NlS~~~~gR~~~l~~~  179 (312)
                      ...+|.|+|.-|...+.++..+
T Consensus       154 vLk~L~nLS~np~~~~~Ll~~q  175 (254)
T PF04826_consen  154 VLKVLVNLSENPDMTRELLSAQ  175 (254)
T ss_pred             HHHHHHHhccCHHHHHHHHhcc
Confidence            6689999999999988888776

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.68  E-value=1.2e-07  Score=75.42  Aligned_cols=109  Identities=26%  Similarity=0.337  Sum_probs=95.8

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCCh-hHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNS-ELAG   80 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~-~~~~   80 (312)
                      -++.|++||.++++++|..|+..|..++.. ++....+.+.  ++++.++.++.++ +.++..|+.+|-|++.++ ....
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA--GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC--CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            367899999999999999999999999987 6676666553  6899999999988 899999999999999876 5566


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhc
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLT  114 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT  114 (312)
                      .+.+.|+++.++..+.+++......++.+|.||+
T Consensus        86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            6777799999999999998899999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.53  E-value=1.8e-06  Score=80.05  Aligned_cols=155  Identities=18%  Similarity=0.276  Sum_probs=122.9

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC---ccchhhHHHHHHhcCCChhHHHH
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN---KEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~---~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      ++-+..+|.++++.||..|+..+-.++.+.+++..|-    ..++.++..+...   ......++.+|.|||.....+..
T Consensus        56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik----~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~  131 (254)
T PF04826_consen   56 ISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK----MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHM  131 (254)
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhh
Confidence            5668889999999999999999999999999988773    3577777754332   56678899999999988887777


Q ss_pred             hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHH
Q 048744           82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSI  161 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~v  161 (312)
                      +.  +.|..++..+..++....-.+..+|.|||..+..+..+++..       .+..++.+|-+...   .+.+-.+-.+
T Consensus       132 l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q-------~~~~~~~Lf~~~~~---~~~l~~~l~~  199 (254)
T PF04826_consen  132 LA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQ-------VLSSFLSLFNSSES---KENLLRVLTF  199 (254)
T ss_pred             HH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhcc-------chhHHHHHHccCCc---cHHHHHHHHH
Confidence            75  478888999988888888899999999999999888888864       25688888877643   2456667799


Q ss_pred             HHhhcCChhhhhhh
Q 048744          162 LVNISKKEAGRKIL  175 (312)
Q Consensus       162 l~NlS~~~~gR~~~  175 (312)
                      |.||+..-.-+.++
T Consensus       200 ~~ni~~~~~~~~~~  213 (254)
T PF04826_consen  200 FENINENIKKEAYV  213 (254)
T ss_pred             HHHHHHhhCcccce
Confidence            99997665555433

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=1.2e-05  Score=80.60  Aligned_cols=256  Identities=21%  Similarity=0.242  Sum_probs=163.0

Q ss_pred             hHHHHHhccC-CCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744            4 ELEELLGFLC-SPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA   79 (312)
Q Consensus         4 ~l~ELv~FL~-~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~   79 (312)
                      -++.+|+||+ +.+|.+|-.|+-.|...+.. .+.-..+..  .++++.+++|+... ..+..+|+-+|=|+..| +..+
T Consensus       110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~--agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R  187 (514)
T KOG0166|consen  110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD--AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR  187 (514)
T ss_pred             cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc--CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence            4788999998 66899999998888877654 333222222  37899999999888 89999999999999987 5777


Q ss_pred             HHhhhhhHHHHHHHHHcCCCC-hhHHHHHHHHHhhcCCccc------hHHHhhhh-------hhh-hh------------
Q 048744           80 GKMVQMGMIKTAMDLLYKPDS-SITRLLVMLLVNLTQLDYG------ISSLLQVE-------DEQ-IQ------------  132 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~~~~-~~ad~a~mLLsNLT~~~~~------~~~ll~~~-------~e~-~~------------  132 (312)
                      +.+++.|++..|+.++.++.. ..-..+.-.||||+|....      +..++...       ++. ..            
T Consensus       188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg  267 (514)
T KOG0166|consen  188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG  267 (514)
T ss_pred             HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            777888999999999998776 5667788899999999842      22222211       110 00            


Q ss_pred             ----------hhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhh-cCChhhhhhhcccccchhhhhhhccc-CCchhhHhh
Q 048744          133 ----------GLYVMKLVRSFCRSSSEASDDPFEHVGSILVNI-SKKEAGRKILLDPKRGLLKQIVRQFD-SSNYLRKKG  200 (312)
Q Consensus       133 ----------~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~Nl-S~~~~gR~~~l~~~~~~l~~ll~~~~-~~s~iRR~g  200 (312)
                                .-..++|++++.....+-....+.    .+-|+ |....=.+.+++.  |.+..+...+. ++....|+-
T Consensus       268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLR----aiGNIvtG~d~QTq~vi~~--~~L~~l~~ll~~s~~~~ikkE  341 (514)
T KOG0166|consen  268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALR----AIGNIVTGSDEQTQVVINS--GALPVLSNLLSSSPKESIKKE  341 (514)
T ss_pred             ChHHHHHHHHccchHHHHHHHcCCCcccccHHHh----hccceeeccHHHHHHHHhc--ChHHHHHHHhccCcchhHHHH
Confidence                      001335555554443321111111    11221 2222222233333  24444444433 455556788


Q ss_pred             HHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHh
Q 048744          201 VSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLIT  280 (312)
Q Consensus       201 va~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~  280 (312)
                      ++-||=|++=....|-+.++..  +++|.|+--+...                           |-++|+..+=||-.+|
T Consensus       342 AcW~iSNItAG~~~qiqaVida--~l~p~Li~~l~~~---------------------------ef~~rKEAawaIsN~t  392 (514)
T KOG0166|consen  342 ACWTISNITAGNQEQIQAVIDA--NLIPVLINLLQTA---------------------------EFDIRKEAAWAISNLT  392 (514)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHc--ccHHHHHHHHhcc---------------------------chHHHHHHHHHHHhhc
Confidence            9999999999999887666653  6777664333221                           4567777777777777


Q ss_pred             cCHhHHH--HHHhCCcch
Q 048744          281 LQEAGLR--AFWSVNGPR  296 (312)
Q Consensus       281 ~t~~gR~--~lr~~~vy~  296 (312)
                      ++..=+.  ||-+.|+.+
T Consensus       393 s~g~~~qi~yLv~~giI~  410 (514)
T KOG0166|consen  393 SSGTPEQIKYLVEQGIIK  410 (514)
T ss_pred             ccCCHHHHHHHHHcCCch
Confidence            6655333  777777655

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.36  E-value=5.6e-05  Score=76.59  Aligned_cols=275  Identities=21%  Similarity=0.231  Sum_probs=186.3

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhcc-CccchhhHHHHHHhcC-CChhHHHHh
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSE-NKEVSEPATEALVNLS-QNSELAGKM   82 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d-~~~~~~~Al~~LiNLS-~d~~~~~~l   82 (312)
                      +.-++.-|.+++.+|.+.|+..|..++....+.+.++..  ..+..|..++.. ...++.-++.++++++ ..+...+.+
T Consensus       121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~--~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~  198 (503)
T PF10508_consen  121 LPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDS--NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV  198 (503)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCc--chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            455778888999999999999999999999888888864  458899999888 4677888999999997 567888888


Q ss_pred             hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH--H
Q 048744           83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG--S  160 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la--~  160 (312)
                      .+.|++..++..+.+.+....-.++.+|+.|+..+.|..-+.+.+       .+.+|.+.+.....+.....+...|  .
T Consensus       199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g-------i~~~L~~~l~~~~~dp~~~~~~l~g~~~  271 (503)
T PF10508_consen  199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG-------IFDKLSNLLQDSEEDPRLSSLLLPGRMK  271 (503)
T ss_pred             HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC-------HHHHHHHHHhccccCCcccchhhhhHHH
Confidence            888999999999999666566688999999999998877665543       3678888887764433112222122  5


Q ss_pred             HHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHh-hhcc---------------
Q 048744          161 ILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLL-LISE---------------  224 (312)
Q Consensus       161 vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll-~~~~---------------  224 (312)
                      +|.|++.....  -++..-..++..+...+++.++.-+..+..|+=+.|...+--  .+| ....               
T Consensus       272 f~g~la~~~~~--~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~--~~L~~~~~~~~~~~l~~~~~~~~  347 (503)
T PF10508_consen  272 FFGNLARVSPQ--EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK--QLLLQKQGPAMKHVLKAIGDAIK  347 (503)
T ss_pred             HHHHHHhcChH--HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH--HHHHhhcchHHHHHHHHHHHHhc
Confidence            77888775222  122211124444555557788888999999999999654332  333 2111               


Q ss_pred             -----------ChhhhhhhcccCCCCCChhhhccCcHHhhh-hh----------ccCCCCCCChHHHHHHHHHHHHHhcC
Q 048744          225 -----------FLWPALLLPVAGNKVYKEEDTSKIPLELAS-AL----------RIEREPVDDPEIRIQALESIYLITLQ  282 (312)
Q Consensus       225 -----------~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~-~l----------~~~re~e~d~~Ir~~llE~Ll~L~~t  282 (312)
                                 +-+..++   ..+++-.+++...+-.. +| .+          +--++|  =|+||...+.-|..||+.
T Consensus       348 ~~~~~lk~r~l~al~~il---~~~~~~~~~~i~~~~~~-w~~~~~~~~~~~~l~~~~~qP--F~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  348 SGSTELKLRALHALASIL---TSGTDRQDNDILSITES-WYESLSGSPLSNLLMSLLKQP--FPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             CCchHHHHHHHHHHHHHH---hcCCCCchHHHHHHHHH-HHHHhcCCchHHHHHHHhcCC--chHHHHHHHHHHHHHhcC
Confidence                       1222222   23333344444322222 11 11          123555  699999999999999999


Q ss_pred             HhHHHHHHh-CCcchhc
Q 048744          283 EAGLRAFWS-VNGPRLV  298 (312)
Q Consensus       283 ~~gR~~lr~-~~vy~vl  298 (312)
                      +||-+.+-. -|..+.|
T Consensus       422 ~Wg~~~i~~~~gfie~l  438 (503)
T PF10508_consen  422 PWGQREICSSPGFIEYL  438 (503)
T ss_pred             HHHHHHHHhCccHHhhh
Confidence            999886544 3444433

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=4.3e-05  Score=76.73  Aligned_cols=199  Identities=18%  Similarity=0.211  Sum_probs=138.6

Q ss_pred             hHHHHHhccCCCCH-HHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHH
Q 048744            4 ELEELLGFLCSPSP-SVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAG   80 (312)
Q Consensus         4 ~l~ELv~FL~~~~~-~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~   80 (312)
                      .++.|..++..+.+ -..+.|+=.|..+....+.-..+-+. ..+++.|.+++... ..+..||.-+|.+||+. .+.-.
T Consensus       195 ~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v-~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq  273 (514)
T KOG0166|consen  195 ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV-APILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQ  273 (514)
T ss_pred             chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence            47788999986543 45555555555555443221222222 25899999999887 89999999999999976 46666


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCcc-chHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY-GISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG  159 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~-~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la  159 (312)
                      .+++.|.+.+++..+..++....-.|.+.+=|++.... ....+++.+       .++.|..++.+...++-+..   .+
T Consensus       274 ~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~-------~L~~l~~ll~~s~~~~ikkE---Ac  343 (514)
T KOG0166|consen  274 MVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSG-------ALPVLSNLLSSSPKESIKKE---AC  343 (514)
T ss_pred             HHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcC-------hHHHHHHHhccCcchhHHHH---HH
Confidence            67778999999999999988887789999999866554 333444432       37788888876543321011   56


Q ss_pred             HHHHhhcCC-hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhh
Q 048744          160 SILVNISKK-EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ  215 (312)
Q Consensus       160 ~vl~NlS~~-~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H  215 (312)
                      -+++|++.- ++=.+.+++.  +++..|+-.+++..-.-|+-++-+|.|+|-....+
T Consensus       344 W~iSNItAG~~~qiqaVida--~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~  398 (514)
T KOG0166|consen  344 WTISNITAGNQEQIQAVIDA--NLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPE  398 (514)
T ss_pred             HHHHHhhcCCHHHHHHHHHc--ccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHH
Confidence            888998763 2244466665  47777777666555556788999999999987755

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.14  E-value=1.6e-05  Score=63.05  Aligned_cols=112  Identities=27%  Similarity=0.279  Sum_probs=88.4

Q ss_pred             chHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHH
Q 048744           46 IALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSL  123 (312)
Q Consensus        46 ~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~l  123 (312)
                      +.++.|+.++.++ ......|+.+|.|++.+ +.....+.+.++++.++..+.++++.....++..|+||+.........
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            5789999999888 78999999999999987 888889988899999999999999999999999999999988543332


Q ss_pred             hhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcC
Q 048744          124 LQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISK  167 (312)
Q Consensus       124 l~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~  167 (312)
                      +..     .| .+..|++.+..++.    .-..+...+|.|+++
T Consensus        87 ~~~-----~g-~l~~l~~~l~~~~~----~~~~~a~~~l~~l~~  120 (120)
T cd00020          87 VLE-----AG-GVPKLVNLLDSSNE----DIQKNATGALSNLAS  120 (120)
T ss_pred             HHH-----CC-ChHHHHHHHhcCCH----HHHHHHHHHHHHhhC
Confidence            221     11 36677777755521    235667788888763

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=97.51  E-value=0.00086  Score=69.69  Aligned_cols=196  Identities=21%  Similarity=0.262  Sum_probs=138.5

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChh---H
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSE---L   78 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~---~   78 (312)
                      +++|.|++|.+..+.++..|..++.-+.-. ...|..+-+-  +-|+.|+.|+... ..+.+.|.-||=||+-...   .
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrql--ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQL--GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHh--ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence            689999999999999999999999888766 4444444433  4588888888777 8899999999999985432   3


Q ss_pred             HHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCC---CC--C-
Q 048744           79 AGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSS---EA--S-  151 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~---~~--~-  151 (312)
                      .-.|...+-|..++..++. .+......+.-+|-|||.+|.-+..+++-        .+..|.+....+-.   +.  + 
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~--------al~tLt~~vI~P~Sgw~~~~~~~  383 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS--------ALSTLTDNVIIPHSGWEEEPAPR  383 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH--------HHHHHHHhhcccccccCCCCccc
Confidence            4444555889999999886 55678889999999999998644333331        24445444433222   10  1 


Q ss_pred             ----CCchhhHHHHHHhhcC-Chhhhhhhcccccchhhhhhhccc------CCchhhHhhHHHHHHhhhc
Q 048744          152 ----DDPFEHVGSILVNISK-KEAGRKILLDPKRGLLKQIVRQFD------SSNYLRKKGVSGTIRNCCF  210 (312)
Q Consensus       152 ----~~~~~~la~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~------~~s~iRR~gva~~ikNccF  210 (312)
                          ..-+--.+.+|-|+|+ -.++|+.|-+-. |++..|++.+.      +-+.-+=+..+-++||+..
T Consensus       384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~-GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY  452 (717)
T KOG1048|consen  384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECD-GLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY  452 (717)
T ss_pred             ccccceeeehhhhhhccccchhHHHHHHHhhcc-chHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence                1223346788999998 889999986553 68888887532      2334445777788888875

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.024  Score=56.70  Aligned_cols=259  Identities=21%  Similarity=0.178  Sum_probs=167.6

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCCChhHHHHh
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      ++-|+.......|++|+..+..++.+|=..-.|....+  .+++|.+..++.++  +++   |+..|.-+|-|..+....
T Consensus       347 veKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~--~GllP~l~~ll~~d~~~~i---A~~~lYh~S~dD~~K~Mf  421 (791)
T KOG1222|consen  347 VEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVN--GGLLPHLASLLDSDTKHGI---ALNMLYHLSCDDDAKAMF  421 (791)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhh--ccchHHHHHHhCCcccchh---hhhhhhhhccCcHHHHHH
Confidence            56688888889999999999999999977666666544  37999999999877  333   789999999999989888


Q ss_pred             hhhhHHHHHHHHHcCCCChhHHHHHH-HHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHH
Q 048744           83 VQMGMIKTAMDLLYKPDSSITRLLVM-LLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSI  161 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~~~~~~ad~a~m-LLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~v  161 (312)
                      .-.++|..+|+.+......-.|++.. +--||+-...++.-+..       |..+.-||+.-.+..+    .   .|-.+
T Consensus       422 ayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvce-------GqgL~~LM~ra~k~~D----~---lLmK~  487 (791)
T KOG1222|consen  422 AYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCE-------GQGLDLLMERAIKSRD----L---LLMKV  487 (791)
T ss_pred             HHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEec-------CcchHHHHHHHhcccc----h---HHHHH
Confidence            88899999999877655544555443 44688888776542222       2247888887776632    1   36789


Q ss_pred             HHhhcCChhhhh-hhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhh---hhhcccCC
Q 048744          162 LVNISKKEAGRK-ILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPA---LLLPVAGN  237 (312)
Q Consensus       162 l~NlS~~~~gR~-~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~---lLlPlaG~  237 (312)
                      +.|+||+...-+ .|++= .|-+..++.--+  +..==-...||+-|+..-.-.  +..+..+.++.|+   .|.|=|.-
T Consensus       488 vRniSqHeg~tqn~Fidy-vgdLa~i~~nd~--~E~F~~EClGtlanL~v~dld--w~~ilq~~~LvPw~k~~L~pga~e  562 (791)
T KOG1222|consen  488 VRNISQHEGATQNMFIDY-VGDLAGIAKNDN--SESFGLECLGTLANLKVTDLD--WAKILQSENLVPWMKTQLQPGADE  562 (791)
T ss_pred             HHHhhhccchHHHHHHHH-HHHHHHHhhcCc--hHHHHHHHHHHHhhcccCCCC--HHHHHhhccccHHHHHhhcCCccc
Confidence            999999977444 34431 122222222211  111223356677777652222  2456667788887   57776654


Q ss_pred             CCCChhh------------hcc-------CcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHHHHHh
Q 048744          238 KVYKEED------------TSK-------IPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWS  291 (312)
Q Consensus       238 ee~~~ee------------~~~-------lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~~lr~  291 (312)
                      +++--+-            -..       .|.-++  +-+.++.  |.++-..++--++|.-.....|++|-+
T Consensus       563 ddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlie--LL~a~Qe--DDEfV~QiiyVF~Q~l~He~tr~~mik  631 (791)
T KOG1222|consen  563 DDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIE--LLQACQE--DDEFVVQIIYVFLQFLKHELTRRLMIK  631 (791)
T ss_pred             hhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHH--HHHhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4431111            110       111111  1123333  778888888888888877888887654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=96.82  E-value=0.011  Score=56.96  Aligned_cols=214  Identities=19%  Similarity=0.215  Sum_probs=139.2

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchh-hhhhcccchHHHHHHhhccC-c--cchhhHHHHHHhcCCC--h
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQ-SLSKYSKIALPSLARLLSEN-K--EVSEPATEALVNLSQN--S   76 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~-~i~~~~~~~i~~L~~L~~d~-~--~~~~~Al~~LiNLS~d--~   76 (312)
                      .+++-+|++|++++.+||.+|+=.|=...|..++.. .+.+.  +++..|+.++... +  ...++|-=.|-||+.-  |
T Consensus       157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~--galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP  234 (526)
T COG5064         157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC--GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP  234 (526)
T ss_pred             CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhc--CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence            468889999999999999999999988888866554 55554  6788887776544 4  5677888889999852  2


Q ss_pred             --hHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchH-HHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCC
Q 048744           77 --ELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGIS-SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDD  153 (312)
Q Consensus        77 --~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~-~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~  153 (312)
                        .....   ...++.|.+.|-..++...-.||-.+|=|+-.+.-+. ++++.+.       ..+|++++...+..-...
T Consensus       235 ~P~w~~i---sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~-------~~RLvElLs~~sa~iqtP  304 (526)
T COG5064         235 PPDWSNI---SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGI-------PGRLVELLSHESAKIQTP  304 (526)
T ss_pred             CCchHHH---HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCC-------cHHHHHHhcCccccccCH
Confidence              21111   2467888888887777777789999999987774333 4555442       348999998865432111


Q ss_pred             chhhHHHHHHhh-cCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhh
Q 048744          154 PFEHVGSILVNI-SKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLL  232 (312)
Q Consensus       154 ~~~~la~vl~Nl-S~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLl  232 (312)
                      .+.-    ..|+ |....--+.+++-  |.++.+.+.++++...-|+.+--||-|+.-....|.+..+.  -|+.|-|.-
T Consensus       305 alR~----vGNIVTG~D~QTqviI~~--G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid--~nliPpLi~  376 (526)
T COG5064         305 ALRS----VGNIVTGSDDQTQVIINC--GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID--ANLIPPLIH  376 (526)
T ss_pred             HHHh----hcCeeecCccceehheec--ccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHh--cccchHHHH
Confidence            1111    2222 2222222223332  46677777677766667777888999998888888543333  355555444


Q ss_pred             cccC
Q 048744          233 PVAG  236 (312)
Q Consensus       233 PlaG  236 (312)
                      -+..
T Consensus       377 lls~  380 (526)
T COG5064         377 LLSS  380 (526)
T ss_pred             HHHH
Confidence            3333

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=96.81  E-value=0.02  Score=56.56  Aligned_cols=192  Identities=15%  Similarity=0.119  Sum_probs=131.6

Q ss_pred             HHHHHhccCC-CCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCc--cchhhHHHHH-------H-hcC
Q 048744            5 LEELLGFLCS-PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENK--EVSEPATEAL-------V-NLS   73 (312)
Q Consensus         5 l~ELv~FL~~-~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~--~~~~~Al~~L-------i-NLS   73 (312)
                      ..+|++.|.+ -|++++..-.+.+-....++.-+-.+.++  +++.++..++...+  .-..|++..+       + =++
T Consensus       225 ~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~--gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt  302 (604)
T KOG4500|consen  225 VFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQN--GLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT  302 (604)
T ss_pred             HHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhc--chHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc
Confidence            4578888885 69999999999999888777665555443  68888888776632  2233333322       1 223


Q ss_pred             CChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCC
Q 048744           74 QNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDD  153 (312)
Q Consensus        74 ~d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~  153 (312)
                      .|++...--.+..++.++++-+.+.+...--...-.+.|.+|.+..|..+.+.+       .+.+|++++.+........
T Consensus       303 GDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~-------~~nkL~~~l~~~~~vdgnV  375 (604)
T KOG4500|consen  303 GDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKD-------FLNKLISCLMQEKDVDGNV  375 (604)
T ss_pred             CchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHH-------HHHHHHHHHHHhcCCCccc
Confidence            455444333333589999999998887777677888999999999999988853       4789999998854322112


Q ss_pred             ch-hhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHh
Q 048744          154 PF-EHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRN  207 (312)
Q Consensus       154 ~~-~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikN  207 (312)
                      .. |-.-+.|.|+-=-...|..|+..  |+.+.++++++..++.----..||+|=
T Consensus       376 ~~qhA~lsALRnl~IPv~nka~~~~a--GvteaIL~~lk~~~ppv~fkllgTlrM  428 (604)
T KOG4500|consen  376 ERQHACLSALRNLMIPVSNKAHFAPA--GVTEAILLQLKLASPPVTFKLLGTLRM  428 (604)
T ss_pred             hhHHHHHHHHHhccccCCchhhcccc--chHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            23 33468888988777788888875  588999998875444434444555553

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.73  E-value=0.023  Score=56.85  Aligned_cols=160  Identities=15%  Similarity=0.218  Sum_probs=125.2

Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhh
Q 048744            6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQ   84 (312)
Q Consensus         6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~   84 (312)
                      .=||.-|...|.++-......|..+|--.+|+...-+.  +++..|+++..-+ +...+-.+..|.|||-|...+..++.
T Consensus       307 ~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~--~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~  384 (791)
T KOG1222|consen  307 AMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQN--GIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVN  384 (791)
T ss_pred             HHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhc--cHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhh
Confidence            34677777778888888899999999889998776554  6899999999888 77888899999999999999999999


Q ss_pred             hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHh
Q 048744           85 MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVN  164 (312)
Q Consensus        85 ~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~N  164 (312)
                      .|.++.++..+.+.+..  ..|.-.|--+|-.+. ++.++...+      .+..|++....+....  ...+-+ ++-.|
T Consensus       385 ~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~-~K~MfayTd------ci~~lmk~v~~~~~~~--vdl~li-a~ciN  452 (791)
T KOG1222|consen  385 GGLLPHLASLLDSDTKH--GIALNMLYHLSCDDD-AKAMFAYTD------CIKLLMKDVLSGTGSE--VDLALI-ALCIN  452 (791)
T ss_pred             ccchHHHHHHhCCcccc--hhhhhhhhhhccCcH-HHHHHHHHH------HHHHHHHHHHhcCCce--ecHHHH-HHHHH
Confidence            99999999999765542  235555666887775 677777654      3788998888775432  234444 66689


Q ss_pred             hcCChhhhhhhcccc
Q 048744          165 ISKKEAGRKILLDPK  179 (312)
Q Consensus       165 lS~~~~gR~~~l~~~  179 (312)
                      ++--+++-+.++.-+
T Consensus       453 l~lnkRNaQlvceGq  467 (791)
T KOG1222|consen  453 LCLNKRNAQLVCEGQ  467 (791)
T ss_pred             HHhccccceEEecCc
Confidence            999998888888754

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=96.70  E-value=0.0081  Score=66.36  Aligned_cols=180  Identities=18%  Similarity=0.185  Sum_probs=113.0

Q ss_pred             hHHHHHhccC--CC-------CHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc
Q 048744            4 ELEELLGFLC--SP-------SPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL   72 (312)
Q Consensus         4 ~l~ELv~FL~--~~-------~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL   72 (312)
                      +|.|||+.=|  +.       ...+|+.|.-.|..||=. ..||..|... +++++++|.-+... ...-.--...|-||
T Consensus       343 AIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~-rgfMeavVAQL~s~peeL~QV~AsvLRNL  421 (2195)
T KOG2122|consen  343 AIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ-RGFMEAVVAQLISAPEELLQVYASVLRNL  421 (2195)
T ss_pred             HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh-hhHHHHHHHHHhcChHHHHHHHHHHHHhc
Confidence            4777877655  22       357999999999999955 5577778775 48999999888666 46666677899999


Q ss_pred             CC--ChhHHHHhhhhhHHHHHHHH-HcCCCChhHHHHHHHHHhhcCCc-cchHHHhhhhhhhhhhhhHHHHHHHHhcCCC
Q 048744           73 SQ--NSELAGKMVQMGMIKTAMDL-LYKPDSSITRLLVMLLVNLTQLD-YGISSLLQVEDEQIQGLYVMKLVRSFCRSSS  148 (312)
Q Consensus        73 S~--d~~~~~~l~~~~~i~~lv~~-i~~~~~~~ad~a~mLLsNLT~~~-~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~  148 (312)
                      |+  |....+.|-+.|-|..|+.. +.+.++....-..-.|=||+.+- ++...|.+..     | .+.-||..+.-...
T Consensus       422 SWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVD-----G-ALaFLVg~LSY~~q  495 (2195)
T KOG2122|consen  422 SWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVD-----G-ALAFLVGTLSYEGQ  495 (2195)
T ss_pred             cccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhccc-----c-hHHHHHhhccccCC
Confidence            95  55555555555777766664 44444344445566677897765 5555666542     2 46666666653221


Q ss_pred             CCCCCchhhHHHHHHhhcCChhhhh-h--hcccccchhhhhhhccc
Q 048744          149 EASDDPFEHVGSILVNISKKEAGRK-I--LLDPKRGLLKQIVRQFD  191 (312)
Q Consensus       149 ~~~~~~~~~la~vl~NlS~~~~gR~-~--~l~~~~~~l~~ll~~~~  191 (312)
                      -+--+-.+--+.||-|+|++-..+. |  ++...+ .|+.||.+++
T Consensus       496 s~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~N-CLq~LLQ~LK  540 (2195)
T KOG2122|consen  496 SNTLAIIESAGGILRNVSSLIATCEDYRQILRRHN-CLQTLLQHLK  540 (2195)
T ss_pred             cchhhhhhcCccHHHHHHhHhhccchHHHHHHHhh-HHHHHHHHhh
Confidence            1111223445677888877766554 2  444433 4555555433

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.58  E-value=0.016  Score=43.62  Aligned_cols=83  Identities=25%  Similarity=0.354  Sum_probs=62.2

Q ss_pred             HHHHHhcc-CCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            5 LEELLGFL-CSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         5 l~ELv~FL-~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      ++.|+..| +++++.||..|+..+..+          . . +.+++.|..++.|. +.++..|+.+|-++.         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~-~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL----------G-D-PEAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC----------T-H-HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc----------C-C-HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899999 799999999999888733          1 1 14688888888888 889999999998872         


Q ss_pred             hhhhHHHHHHHHHcCCCChh-HHHHHHH
Q 048744           83 VQMGMIKTAMDLLYKPDSSI-TRLLVML  109 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~~~~~~-ad~a~mL  109 (312)
                       +...++.+.+.+.+++... ...|..-
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~a   86 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEA   86 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhh
Confidence             3467888888888876654 3334433

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.50  E-value=0.049  Score=51.75  Aligned_cols=196  Identities=14%  Similarity=0.078  Sum_probs=117.1

Q ss_pred             HHhccC--CCCHHHHHHHHHHHHhcCCCccchhhhhhc----cc-chHHHHHHhhccC-ccchhhHHHHHHhcCCChhHH
Q 048744            8 LLGFLC--SPSPSVKKAAVDIVRGLTGSEDGLQSLSKY----SK-IALPSLARLLSEN-KEVSEPATEALVNLSQNSELA   79 (312)
Q Consensus         8 Lv~FL~--~~~~~vR~~Al~~llgls~~~~~~~~i~~~----~~-~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~   79 (312)
                      ++.+|+  .+++++.+..+..+-.+-...+.+..++..    .+ .+...+.+++..+ ..+...|..+|.+|.......
T Consensus        60 ~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~  139 (312)
T PF03224_consen   60 FLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKR  139 (312)
T ss_dssp             --HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT-
T ss_pred             HHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcc
Confidence            344444  479999999999998877665555544421    11 2566777777665 889999999999996543333


Q ss_pred             HHhhhhhHHHHHHHHHcC----CCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCC--CCCC
Q 048744           80 GKMVQMGMIKTAMDLLYK----PDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSE--ASDD  153 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~----~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~--~~~~  153 (312)
                      ..-...+++..+++.+.+    ++......+...|++|.+.++....+++.+       .+..|++.+.....+  +...
T Consensus       140 ~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~-------~v~~l~~iL~~~~~~~~~~~~  212 (312)
T PF03224_consen  140 SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSN-------GVSPLFDILRKQATNSNSSGI  212 (312)
T ss_dssp             -HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHH-------HHHHHHHHHH---------HH
T ss_pred             ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcC-------cHHHHHHHHHhhcccCCCCch
Confidence            332225667777777765    223455789999999999998777766621       256666666322111  1111


Q ss_pred             c-hhhHHHHHHhhcCChhhhhhhcccccchhhhhhhccc--CCchhhHhhHHHHHHhhhccch
Q 048744          154 P-FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFD--SSNYLRKKGVSGTIRNCCFEAE  213 (312)
Q Consensus       154 ~-~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~--~~s~iRR~gva~~ikNccF~~~  213 (312)
                      . .-|+..++=-+|=.+++-..|.+..  ++..++....  .+-.+ =|-+.+|+|||+=...
T Consensus       213 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKv-vRv~la~l~Nl~~~~~  272 (312)
T PF03224_consen  213 QLQYQALLCLWLLSFEPEIAEELNKKY--LIPLLADILKDSIKEKV-VRVSLAILRNLLSKAP  272 (312)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHTTS--HHHHHHHHHHH--SHHH-HHHHHHHHHHTTSSSS
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHhccc--hHHHHHHHHHhcccchH-HHHHHHHHHHHHhccH
Confidence            1 2334577888999999999998876  5655555432  12222 2457899999996554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PTZ00429 beta-adaptin; Provisional

Probab=96.27  E-value=0.25  Score=52.62  Aligned_cols=101  Identities=18%  Similarity=0.217  Sum_probs=77.3

Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHHHhh
Q 048744            6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAGKMV   83 (312)
Q Consensus         6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~~l~   83 (312)
                      .-+..-+.++||-||..|+..+.++-...     +..   .+++.+++++.|. +.++|.|+.|+..+-. +++   .+.
T Consensus       108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~e---~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~  176 (746)
T PTZ00429        108 NTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VLE---YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFY  176 (746)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---ccc
Confidence            34566777889999999999888874322     222   4677889999998 8999999999999864 443   222


Q ss_pred             hhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744           84 QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD  117 (312)
Q Consensus        84 ~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~  117 (312)
                      +.++++.+.+++.|.++...-.|..+|.-+....
T Consensus       177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~  210 (746)
T PTZ00429        177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG  210 (746)
T ss_pred             ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence            3488999999999999988888989888886543

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.26  E-value=0.099  Score=52.42  Aligned_cols=243  Identities=20%  Similarity=0.252  Sum_probs=124.8

Q ss_pred             HHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHHHhhh
Q 048744            7 ELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAGKMVQ   84 (312)
Q Consensus         7 ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~~l~~   84 (312)
                      -+..-|.++|+.+|..|+..+..+. +++    +..   .+++.+.+++.+. +.+++.|+.|+..+. .+|+....   
T Consensus        83 ~l~kdl~~~n~~~~~lAL~~l~~i~-~~~----~~~---~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~---  151 (526)
T PF01602_consen   83 SLQKDLNSPNPYIRGLALRTLSNIR-TPE----MAE---PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED---  151 (526)
T ss_dssp             HHHHHHCSSSHHHHHHHHHHHHHH--SHH----HHH---HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG---
T ss_pred             HHHHhhcCCCHHHHHHHHhhhhhhc-ccc----hhh---HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH---
Confidence            3455577888888888888888876 222    221   4677777887777 778888888888886 45554333   


Q ss_pred             hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccc----hHHHhhhhh---hhhhhhhHHHHHHHHhcCCCCCCCCc--h
Q 048744           85 MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYG----ISSLLQVED---EQIQGLYVMKLVRSFCRSSSEASDDP--F  155 (312)
Q Consensus        85 ~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~----~~~ll~~~~---e~~~~~~l~~Ll~~f~~~~~~~~~~~--~  155 (312)
                       ++++.+...+.|+++...-.|+.++..+...+..    ...++....   .....+....+++.+..-........  .
T Consensus       152 -~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~  230 (526)
T PF01602_consen  152 -ELIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKN  230 (526)
T ss_dssp             -GHHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHH
T ss_pred             -HHHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHH
Confidence             2566677777777777777777777777222222    222322211   11122223355555554322111111  1


Q ss_pred             hhHHHHHHhhc------CChhhhhhh-ccccc----chhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhcc
Q 048744          156 EHVGSILVNIS------KKEAGRKIL-LDPKR----GLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISE  224 (312)
Q Consensus       156 ~~la~vl~NlS------~~~~gR~~~-l~~~~----~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~  224 (312)
                      .++..++.-++      .....|-++ +.+..    ..+..+..++.++++.-|--+..+|...+-..  + +.+.....
T Consensus       231 ~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~-~~v~~~~~  307 (526)
T PF01602_consen  231 RIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--P-PAVFNQSL  307 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--H-HHHGTHHH
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--c-hhhhhhhh
Confidence            22222222111      001111111 01111    12333444445566656666777777777644  1 11111000


Q ss_pred             ChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHHHHHhCCcc
Q 048744          225 FLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGP  295 (312)
Q Consensus       225 ~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~~lr~~~vy  295 (312)
                      . +-                          .+.  .+  +|+.||...++.|+.||+.....+.+.+..-|
T Consensus       308 ~-~~--------------------------~l~--~~--~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~  347 (526)
T PF01602_consen  308 I-LF--------------------------FLL--YD--DDPSIRKKALDLLYKLANESNVKEILDELLKY  347 (526)
T ss_dssp             H-HH--------------------------HHH--CS--SSHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred             h-hh--------------------------eec--CC--CChhHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence            0 00                          011  12  37889999999999998888877766655433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.22  E-value=0.021  Score=50.88  Aligned_cols=124  Identities=21%  Similarity=0.218  Sum_probs=87.6

Q ss_pred             ccchhhHHHHHHhcCCChhHHHHhhhh--h--------------HHHHHHHHHcC------CCChhHHHHHHHHHhhcCC
Q 048744           59 KEVSEPATEALVNLSQNSELAGKMVQM--G--------------MIKTAMDLLYK------PDSSITRLLVMLLVNLTQL  116 (312)
Q Consensus        59 ~~~~~~Al~~LiNLS~d~~~~~~l~~~--~--------------~i~~lv~~i~~------~~~~~ad~a~mLLsNLT~~  116 (312)
                      ...+.-+...|-|||..+..+..+++.  .              ++..|++....      .....-+..+.+++|+|+.
T Consensus         9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~   88 (192)
T PF04063_consen    9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL   88 (192)
T ss_pred             cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence            455677888999999988888876642  3              67788888776      2234668899999999999


Q ss_pred             ccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhhhhcccc-cchhh-hhhhc
Q 048744          117 DYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPK-RGLLK-QIVRQ  189 (312)
Q Consensus       117 ~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~~-~~~l~-~ll~~  189 (312)
                      ++|+.-+++....  .+ .+.+|+-.+...+..-    -.-+|+++-|++=-.+.-.|++.++ -.++. .|+|.
T Consensus        89 ~~gR~~~l~~~~~--~~-~l~kLl~ft~~~s~iR----R~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   89 PEGRQFFLDPQRY--DG-PLQKLLPFTEHKSVIR----RGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             HHHHHHHhCchhh--hh-HHHHHHHHhccCcHHH----HHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence            9999888765321  11 2567776665542211    1238899999999988889999986 34544 45554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF05536 Neurochondrin: Neurochondrin

Probab=96.21  E-value=0.028  Score=57.66  Aligned_cols=98  Identities=18%  Similarity=0.276  Sum_probs=79.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCccchhhhhhccc--chHHHHHHhhccC-c-cchhhHHHHHHhcCCChhHHHHhhhhhHHHH
Q 048744           15 PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSK--IALPSLARLLSEN-K-EVSEPATEALVNLSQNSELAGKMVQMGMIKT   90 (312)
Q Consensus        15 ~~~~vR~~Al~~llgls~~~~~~~~i~~~~~--~~i~~L~~L~~d~-~-~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~   90 (312)
                      +...-+..|+..|-.++..++-    ...++  .-||.|+..+... . ....+|+.||.++++.+..++.+++.|.|..
T Consensus        69 ~~~~~~~LavsvL~~f~~~~~~----a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~  144 (543)
T PF05536_consen   69 PPEEYLSLAVSVLAAFCRDPEL----ASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPA  144 (543)
T ss_pred             CHHHHHHHHHHHHHHHcCChhh----hcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHH
Confidence            4567889999999999985543    22211  3588888888666 5 8899999999999999999999999999999


Q ss_pred             HHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744           91 AMDLLYKPDSSITRLLVMLLVNLTQLD  117 (312)
Q Consensus        91 lv~~i~~~~~~~ad~a~mLLsNLT~~~  117 (312)
                      +++.+.+ ++...|.+..+|.|+....
T Consensus       145 L~ei~~~-~~~~~E~Al~lL~~Lls~~  170 (543)
T PF05536_consen  145 LCEIIPN-QSFQMEIALNLLLNLLSRL  170 (543)
T ss_pred             HHHHHHh-CcchHHHHHHHHHHHHHhc
Confidence            9999988 6667889999999876543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.055  Score=51.41  Aligned_cols=117  Identities=19%  Similarity=0.234  Sum_probs=85.6

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhh
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMV   83 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~   83 (312)
                      ++.|.+.+.+..+  -+.|+.+++.++....-++.+.+   .+++-+.-.+-+. ...+.-+...|.|||.++..+..+.
T Consensus        46 lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~---~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll  120 (353)
T KOG2973|consen   46 LKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ---DLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALL  120 (353)
T ss_pred             HHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHH
Confidence            6678888887666  56788899999988777766654   2666666666666 8899999999999999987777665


Q ss_pred             hh------hHHHHHHHHHcCCCC-h--hHHHHHHHHHhhcCCccchHHHhhh
Q 048744           84 QM------GMIKTAMDLLYKPDS-S--ITRLLVMLLVNLTQLDYGISSLLQV  126 (312)
Q Consensus        84 ~~------~~i~~lv~~i~~~~~-~--~ad~a~mLLsNLT~~~~~~~~ll~~  126 (312)
                      ..      ..+..++...+++.- .  --+..+-+++|||+.+.|..-++..
T Consensus       121 ~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~  172 (353)
T KOG2973|consen  121 TNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEP  172 (353)
T ss_pred             HhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcch
Confidence            31      356667776666443 2  2246778999999999987655543

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.74  E-value=0.041  Score=52.28  Aligned_cols=135  Identities=21%  Similarity=0.230  Sum_probs=100.2

Q ss_pred             hHHHHHhccCC----CCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhh------ccC--ccchhhHHHHHHh
Q 048744            4 ELEELLGFLCS----PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL------SEN--KEVSEPATEALVN   71 (312)
Q Consensus         4 ~l~ELv~FL~~----~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~------~d~--~~~~~~Al~~LiN   71 (312)
                      .+.-++++|++    ++.+++..|+..+..+...++.|..+++.  +.++.|..++      +..  .+..-.++.|+--
T Consensus       147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~--~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl  224 (312)
T PF03224_consen  147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS--NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL  224 (312)
T ss_dssp             HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH--HHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc--CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Confidence            45667777774    45677899999999999999999888774  5688888887      222  5677889999999


Q ss_pred             cCCChhHHHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcCCcc--chHHHhhhhhhhhhhhhHHHHHHHHhcCCC
Q 048744           72 LSQNSELAGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQLDY--GISSLLQVEDEQIQGLYVMKLVRSFCRSSS  148 (312)
Q Consensus        72 LS~d~~~~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~~~~--~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~  148 (312)
                      ||=++.+++.+.+.++|..+++.+.+ .+++....+.+.|-||.....  .+..|+..        .+.++++.+....+
T Consensus       225 LSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~--------~~l~~l~~L~~rk~  296 (312)
T PF03224_consen  225 LSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLC--------GLLKTLQNLSERKW  296 (312)
T ss_dssp             HTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH---------HHHHHHHHHSS--
T ss_pred             HhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHc--------cHHHHHHHHhcCCC
Confidence            99999999999998999999998875 677999999999999987776  45454442        25677777766543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=95.69  E-value=0.029  Score=54.05  Aligned_cols=136  Identities=20%  Similarity=0.268  Sum_probs=107.2

Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHh-cCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHHHh
Q 048744            6 EELLGFLCSPSPSVKKAAVDIVRG-LTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAGKM   82 (312)
Q Consensus         6 ~ELv~FL~~~~~~vR~~Al~~llg-ls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~~l   82 (312)
                      ..|++.|+++...|+.-|+..+=. .||++..-+.|...  ++++++..+++.. ..+.|.|.=.+-|+++- .+-...+
T Consensus       288 ~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~--G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqav  365 (526)
T COG5064         288 GRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINC--GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAV  365 (526)
T ss_pred             HHHHHHhcCccccccCHHHHhhcCeeecCccceehheec--ccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHH
Confidence            458999999999998888887754 46666665666543  7899999999888 78999999999999975 4556667


Q ss_pred             hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcC
Q 048744           83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRS  146 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~  146 (312)
                      ++.+.++.|+..+..-+......||-..||.|..--+...++.++.+  .| .|.+|-+++.-.
T Consensus       366 id~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~--qG-~IkpLc~~L~~~  426 (526)
T COG5064         366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVS--QG-FIKPLCDLLDVV  426 (526)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHH--cc-chhHHHHHHhcc
Confidence            78899999999999888888889999999999888777777777653  34 456666665443

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=95.59  E-value=0.053  Score=56.72  Aligned_cols=165  Identities=20%  Similarity=0.156  Sum_probs=119.6

Q ss_pred             HhccC-CCCHHHHHHHHHHHHhcCCCcc-----chhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744            9 LGFLC-SPSPSVKKAAVDIVRGLTGSED-----GLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         9 v~FL~-~~~~~vR~~Al~~llgls~~~~-----~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      +.+|. +.|+.+-+.++.+|..+|+..-     -+..++... ..++.|+.++..+ ..+++.+..+|-|||-|...++.
T Consensus       524 l~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~ke-kgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~l  602 (717)
T KOG1048|consen  524 LLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKE-KGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKEL  602 (717)
T ss_pred             HHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhc-cCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhh
Confidence            44555 6788888888888888887632     122233333 4588999999777 89999999999999999999998


Q ss_pred             hhhhhHHHHHHHHHcCCCC------hhHHHHHHHHHhhc-CCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCc
Q 048744           82 MVQMGMIKTAMDLLYKPDS------SITRLLVMLLVNLT-QLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDP  154 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~------~~ad~a~mLLsNLT-~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~  154 (312)
                      |+ ...|.-|++.+.++.+      ..+-.+|-.|.|+. .+-.+++.+++.+     |  +++|+-+-.+. .-.|  .
T Consensus       603 ig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~-----g--~~kL~~I~~s~-~S~k--~  671 (717)
T KOG1048|consen  603 IG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIK-----G--IPKLRLISKSQ-HSPK--E  671 (717)
T ss_pred             hh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhcc-----C--hHHHHHHhccc-CCHH--H
Confidence            88 6789999999987554      45567888999998 4557888888754     2  66776554442 2112  2


Q ss_pred             hhhHHHHHHhhcCChhhhhhhcccccchhhhhh
Q 048744          155 FEHVGSILVNISKKEAGRKILLDPKRGLLKQIV  187 (312)
Q Consensus       155 ~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll  187 (312)
                      +.+.+.|+.+|=+..+=|.-+-..+  +.+..+
T Consensus       672 ~kaAs~vL~~lW~y~eLh~~~kk~g--~~q~~F  702 (717)
T KOG1048|consen  672 FKAASSVLDVLWQYKELHFKLKKKG--FKQQDF  702 (717)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhh--hHHHHH
Confidence            5678889999999998887766543  444433

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.50  E-value=0.099  Score=55.03  Aligned_cols=138  Identities=16%  Similarity=0.224  Sum_probs=105.4

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCC--ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGS--EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELA   79 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~--~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~   79 (312)
                      +-+.-|++|+..-+--||..|++.+-.+-..  .+-+..|...+ ..|..|+.++.|. ..++.+|+-.|..|+.+..-.
T Consensus       122 d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P-~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~I  200 (970)
T KOG0946|consen  122 DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSP-MGISKLMDLLRDSREPIRNEAILLLSELVKDNSSI  200 (970)
T ss_pred             hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCc-hhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchH
Confidence            3467789999999999999999988776544  34455565554 5689999999999 789999999999999886666


Q ss_pred             HHhhhh-hHHHHHHHHHcCCC----ChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHH---HHHhcCC
Q 048744           80 GKMVQM-GMIKTAMDLLYKPD----SSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLV---RSFCRSS  147 (312)
Q Consensus        80 ~~l~~~-~~i~~lv~~i~~~~----~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll---~~f~~~~  147 (312)
                      .+|+-. ++.++|++.|.++.    ...+..|..+|-||=+....=..++..+      -||++|.   ..|.-|+
T Consensus       201 QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~------~~i~rL~klL~~f~~~d  270 (970)
T KOG0946|consen  201 QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG------SYIPRLLKLLSVFEFGD  270 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc------ccHHHHHhhcCcccccC
Confidence            677765 89999999998744    3689999999999988775334555532      2555555   5665554

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=95.50  E-value=0.1  Score=53.82  Aligned_cols=113  Identities=16%  Similarity=0.147  Sum_probs=93.9

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC--CChhH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS--QNSEL   78 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS--~d~~~   78 (312)
                      +-.+.||+.|++|.--|...++..|+.+--. .+.++....+  +.|+.|...+.+. +...+.++-+|-|++  .|++.
T Consensus       419 dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~--ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~  496 (678)
T KOG1293|consen  419 DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRN--NGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE  496 (678)
T ss_pred             hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHc--CcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence            3467899999999999999999999998876 5566655554  5699999999888 888999999999998  45555


Q ss_pred             HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744           79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD  117 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~  117 (312)
                      .....++=+...++.++.||+++.-+.|..||=|||-..
T Consensus       497 k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~  535 (678)
T KOG1293|consen  497 KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS  535 (678)
T ss_pred             HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence            555555555778999999999999999999999999774

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.43  E-value=0.17  Score=54.99  Aligned_cols=209  Identities=19%  Similarity=0.271  Sum_probs=116.5

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCCChhHHHH
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      ++-.+.+|.+|.|.||..|+..+=++|.+ ++..+.-+  ...++++|+..+.+.  +.+..+|..+|+|+|.+-. .+.
T Consensus       391 l~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~--~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~  467 (1075)
T KOG2171|consen  391 LPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH--HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSI  467 (1075)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH--HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHH
Confidence            34467899999999999999999999877 54433222  224677888888776  6889999999999996421 122


Q ss_pred             hhh--hhHHHHHHHHHcCCCChhH-HHHHHHHHhhcCCccchHHHhhhhhhhhhhh--hHHHHHHHHhcCCCCCCCCchh
Q 048744           82 MVQ--MGMIKTAMDLLYKPDSSIT-RLLVMLLVNLTQLDYGISSLLQVEDEQIQGL--YVMKLVRSFCRSSSEASDDPFE  156 (312)
Q Consensus        82 l~~--~~~i~~lv~~i~~~~~~~a-d~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~--~l~~Ll~~f~~~~~~~~~~~~~  156 (312)
                      |..  +++++..+..+.++.++.. ..+..-++-.+          +.-.+....|  .++.++.-|......  ++...
T Consensus       468 l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA----------~AA~~~F~pY~d~~Mp~L~~~L~n~~~--~d~r~  535 (1075)
T KOG2171|consen  468 LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA----------DAAQEKFIPYFDRLMPLLKNFLQNADD--KDLRE  535 (1075)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH----------HHHhhhhHhHHHHHHHHHHHHHhCCCc--hhhHH
Confidence            222  2566655555555555433 33333333222          1111112221  144444444443221  12222


Q ss_pred             hHHHHHHhhcCC--hhhhhhhcccccchhhhhhhc---ccCCchhhHhhHHHHHHhhhccchhhhHHHhhhcc-Chhhhh
Q 048744          157 HVGSILVNISKK--EAGRKILLDPKRGLLKQIVRQ---FDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISE-FLWPAL  230 (312)
Q Consensus       157 ~la~vl~NlS~~--~~gR~~~l~~~~~~l~~ll~~---~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~-~~lp~l  230 (312)
                      -=+..+-++|-+  .=||+-|..-...+++.++-.   ....+..-|.-.++.+-+.|        .++.++. .+||.+
T Consensus       536 LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc--------~ilg~~F~p~L~~V  607 (1075)
T KOG2171|consen  536 LRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMC--------RILGDDFAPFLPVV  607 (1075)
T ss_pred             HHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHH--------HHhchhhHhHHHHH
Confidence            224444444433  346666665433345544442   12244445666777777777        3444443 577778


Q ss_pred             hhcccC
Q 048744          231 LLPVAG  236 (312)
Q Consensus       231 LlPlaG  236 (312)
                      +.|+.-
T Consensus       608 mppl~~  613 (1075)
T KOG2171|consen  608 MPPLLK  613 (1075)
T ss_pred             hHHHHH
Confidence            888754

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=95.30  E-value=0.032  Score=36.60  Aligned_cols=41  Identities=27%  Similarity=0.327  Sum_probs=37.1

Q ss_pred             ChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744           75 NSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ  115 (312)
Q Consensus        75 d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~  115 (312)
                      +++.+..+++.|+|+.|++.+.+++......++..|+|||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            35678889999999999999999999999999999999985

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.15  E-value=0.97  Score=45.08  Aligned_cols=200  Identities=19%  Similarity=0.219  Sum_probs=124.2

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCC------Cccchhhhhh--cccchHHHHHHhh-------ccCccchhhHHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTG------SEDGLQSLSK--YSKIALPSLARLL-------SENKEVSEPATEA   68 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~------~~~~~~~i~~--~~~~~i~~L~~L~-------~d~~~~~~~Al~~   68 (312)
                      .++-|+++|.|.|.||--..++.+.-+|.      +.+|-+.++.  ....++..|+..+       .+.....+.+++.
T Consensus       126 ~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~v  205 (536)
T KOG2734|consen  126 AVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAV  205 (536)
T ss_pred             cHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHH
Confidence            46778999999999999999999999984      3445445442  1224555555443       3335567889999


Q ss_pred             HHhcC-CChhHHHHhhhhhHHHHHHHHHcCCCC--hhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHH---H
Q 048744           69 LVNLS-QNSELAGKMVQMGMIKTAMDLLYKPDS--SITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVR---S  142 (312)
Q Consensus        69 LiNLS-~d~~~~~~l~~~~~i~~lv~~i~~~~~--~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~---~  142 (312)
                      +.|+. -+++++..+++.|++.+|+..+....+  .+.-.|..+|+=+-.........+.-.    .|  +.-|++   .
T Consensus       206 veNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l----~G--iD~lL~~la~  279 (536)
T KOG2734|consen  206 VENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPL----DG--IDVLLRQLAV  279 (536)
T ss_pred             HHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCc----cc--HHHHHhhcch
Confidence            99996 578999999999999999998876433  444567777776644443222223222    22  333333   3


Q ss_pred             HhcCCCCCCCCchhhHHHHHHh---hcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccch
Q 048744          143 FCRSSSEASDDPFEHVGSILVN---ISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAE  213 (312)
Q Consensus       143 f~~~~~~~~~~~~~~la~vl~N---lS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~  213 (312)
                      |...++. ..+.-+|..++|.=   +-+.|++|.+|+....--+.-|+-..+   ..-|++...++-...|..+
T Consensus       280 yk~~dP~-~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K---k~sr~SalkvLd~am~g~~  349 (536)
T KOG2734|consen  280 YKRHDPA-TVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK---KVSRGSALKVLDHAMFGPE  349 (536)
T ss_pred             hhccCCC-CcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH---HHhhhhHHHHHHHHHhCCC
Confidence            3333221 11234555555543   447899999999875211222222212   3347788888877777654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.07  E-value=0.41  Score=50.59  Aligned_cols=135  Identities=24%  Similarity=0.242  Sum_probs=104.1

Q ss_pred             hHHHHHhccC-C-CCHHHHHHHHHHHHhcCCCcc-------chh----------hhhhcccchHHHHHHhhccC-ccchh
Q 048744            4 ELEELLGFLC-S-PSPSVKKAAVDIVRGLTGSED-------GLQ----------SLSKYSKIALPSLARLLSEN-KEVSE   63 (312)
Q Consensus         4 ~l~ELv~FL~-~-~~~~vR~~Al~~llgls~~~~-------~~~----------~i~~~~~~~i~~L~~L~~d~-~~~~~   63 (312)
                      -++.||+-|+ + .++++-+.|++.++.++..++       .++          .+.++. +.|..|+..+... -.++.
T Consensus        62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~q-d~I~lll~~~e~~DF~VR~  140 (970)
T KOG0946|consen   62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQ-DNITLLLQSLEEFDFHVRL  140 (970)
T ss_pred             ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCc-hhHHHHHHHHHhhchhhhh
Confidence            3678999999 4 599999999999999987764       221          122333 5677888888666 88999


Q ss_pred             hHHHHHHhcCCC--hhHHHHhhhh-hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHH
Q 048744           64 PATEALVNLSQN--SELAGKMVQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLV  140 (312)
Q Consensus        64 ~Al~~LiNLS~d--~~~~~~l~~~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll  140 (312)
                      -|+..+-+|-+.  .++.+.|... -.|..+|+.+.|..++..+.+.-+|+-|++....+.+++-...      ...+|+
T Consensus       141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFEN------aFerLf  214 (970)
T KOG0946|consen  141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFEN------AFERLF  214 (970)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHH------HHHHHH
Confidence            999999998544  6788888765 7799999999999999999999999999999988877655432      244555


Q ss_pred             HHHhc
Q 048744          141 RSFCR  145 (312)
Q Consensus       141 ~~f~~  145 (312)
                      .....
T Consensus       215 sIIee  219 (970)
T KOG0946|consen  215 SIIEE  219 (970)
T ss_pred             HHHHh
Confidence            55543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.04  E-value=2.2  Score=46.52  Aligned_cols=90  Identities=26%  Similarity=0.323  Sum_probs=61.0

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      .+++|+++|++++++||+.|+..|-.+.            .+.+++.|..++.|. ..++..|+.+|..+....      
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------  683 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------  683 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence            4689999999999999999999987653            124677888888888 888889989987773211      


Q ss_pred             hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhc
Q 048744           83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLT  114 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT  114 (312)
                         .....+...+.++++...-.++..|..+.
T Consensus       684 ---~~~~~L~~~L~~~d~~VR~~A~~aL~~~~  712 (897)
T PRK13800        684 ---PPAPALRDHLGSPDPVVRAAALDVLRALR  712 (897)
T ss_pred             ---CchHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence               01123334444445444445555555543

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.71  E-value=0.2  Score=52.11  Aligned_cols=131  Identities=21%  Similarity=0.235  Sum_probs=98.4

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      -++-+++|.++++|-+|..|+.-+=.+-.....  .+..+-|.++..|..+-.|. +.++|+-..+|+=|-...  .+.|
T Consensus       175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr--~dkl  250 (885)
T KOG2023|consen  175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR--PDKL  250 (885)
T ss_pred             hHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc--HHhc
Confidence            367899999999999999999888666544321  23333457899999999888 899999999998887543  3455


Q ss_pred             hhh--hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCC
Q 048744           83 VQM--GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSS  147 (312)
Q Consensus        83 ~~~--~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~  147 (312)
                      +..  ++|++.+...+|++...|=-||..+.-++..+ -++.+++   +     |+.+|+-.+..|.
T Consensus       251 ~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp-i~~~~L~---p-----~l~kliPvLl~~M  308 (885)
T KOG2023|consen  251 VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP-ICKEVLQ---P-----YLDKLIPVLLSGM  308 (885)
T ss_pred             ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc-CcHHHHH---H-----HHHHHHHHHHccC
Confidence            543  88999999999999999999999999898877 4555444   1     4566666665553

>PTZ00429 beta-adaptin; Provisional

Probab=94.53  E-value=2.1  Score=45.73  Aligned_cols=66  Identities=23%  Similarity=0.210  Sum_probs=50.0

Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC
Q 048744            6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN   75 (312)
Q Consensus         6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d   75 (312)
                      ..+..-|.+++|-||+.|+-.+.-+-...+.   +... .++++.|..++.|. +.+..+|+.+|..+...
T Consensus       143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~-~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQ-QDFKKDLVELLNDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccc-cchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence            3455667899999999999998887543332   2221 25788899999998 89999999999999743

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=94.22  E-value=0.043  Score=35.98  Aligned_cols=39  Identities=33%  Similarity=0.387  Sum_probs=33.2

Q ss_pred             ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC
Q 048744           34 EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ   74 (312)
Q Consensus        34 ~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~   74 (312)
                      +++++.|...  +.++.|+.++++. ..+.+.|+.+|-|||+
T Consensus         2 ~~~~~~i~~~--g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    2 PENKQAIVEA--GGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHHT--THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHc--ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            5667777654  6899999999988 8999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PRK09687 putative lyase; Provisional

Probab=93.86  E-value=0.79  Score=43.10  Aligned_cols=102  Identities=19%  Similarity=0.121  Sum_probs=71.3

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHHHh
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAGKM   82 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~~l   82 (312)
                      ++.|...++++++.||..|+..|-.+.           . +..++.|+.++.|. ..+.+.|+.+|=++.. ++      
T Consensus       130 ~~~l~~~~~D~~~~VR~~a~~aLg~~~-----------~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~------  191 (280)
T PRK09687        130 VEQSQITAFDKSTNVRFAVAFALSVIN-----------D-EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP------  191 (280)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHhccC-----------C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH------
Confidence            556778888899999999999883321           1 24678888888888 8889999999988842 33      


Q ss_pred             hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhh
Q 048744           83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVED  128 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~  128 (312)
                         ..++.|+..+.|+++.....|..-|.++-. +..+..++....
T Consensus       192 ---~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~  233 (280)
T PRK09687        192 ---DIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELK  233 (280)
T ss_pred             ---HHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHc
Confidence               345556667777777777777777776533 444556655543

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=93.74  E-value=0.45  Score=40.44  Aligned_cols=107  Identities=16%  Similarity=0.121  Sum_probs=82.9

Q ss_pred             HHHHHh-ccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            5 LEELLG-FLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         5 l~ELv~-FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      +.+||. |=...+.+.++.-+.+|..+.-++-|-..+.+-  .++...+..+..+ ...+..++..|-|||.|+..++.|
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql--~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I   95 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQL--DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI   95 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHh--hHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence            445554 444679999999999999999888887776554  4677778888887 778899999999999999999999


Q ss_pred             hhhhHHHHHHHHHcCCCChhHHHHHHHHHhh
Q 048744           83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNL  113 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNL  113 (312)
                      .+.+-++..+..+.+|.......+...|--|
T Consensus        96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l  126 (173)
T KOG4646|consen   96 REALGLPLIIFVLSSPPEITVHSAALFLQLL  126 (173)
T ss_pred             HHhcCCceEEeecCCChHHHHHHHHHHHHHh
Confidence            9987788777788887765444444333333

>PRK09687 putative lyase; Provisional

Probab=93.53  E-value=1.4  Score=41.38  Aligned_cols=28  Identities=18%  Similarity=0.287  Sum_probs=16.1

Q ss_pred             hHHHHHHHHHcCCCChhHHHHHHHHHhh
Q 048744           86 GMIKTAMDLLYKPDSSITRLLVMLLVNL  113 (312)
Q Consensus        86 ~~i~~lv~~i~~~~~~~ad~a~mLLsNL  113 (312)
                      ..++.|+..+.|+++....-|++-|.++
T Consensus       159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~  186 (280)
T PRK09687        159 AAIPLLINLLKDPNGDVRNWAAFALNSN  186 (280)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence            3455555566665555555566666655

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=93.47  E-value=0.56  Score=52.71  Aligned_cols=198  Identities=15%  Similarity=0.170  Sum_probs=127.8

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhcc-C-ccchhhHHHHHHhcCCC-hhHHH
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSE-N-KEVSEPATEALVNLSQN-SELAG   80 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d-~-~~~~~~Al~~LiNLS~d-~~~~~   80 (312)
                      ++-+|--|.+.-.++.|.-...|..||=. +.|-..+++.. +-+.+|....-. . ....|..+.||-|||+. .+.+.
T Consensus       396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~-GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA  474 (2195)
T KOG2122|consen  396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRET-GSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA  474 (2195)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhh-hhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence            56677778888889999999999999977 44555555533 556677776433 3 46789999999999975 67788


Q ss_pred             Hhhhh-hHHHHHHHHHcCCC----ChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCch
Q 048744           81 KMVQM-GMIKTAMDLLYKPD----SSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPF  155 (312)
Q Consensus        81 ~l~~~-~~i~~lv~~i~~~~----~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~  155 (312)
                      .|+.. |++.+||.++.=..    -...+-+--+|=|++.+=..++.-=|.+...   .-|..|+..+-.....-..   
T Consensus       475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~---NCLq~LLQ~LKS~SLTiVS---  548 (2195)
T KOG2122|consen  475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH---NCLQTLLQHLKSHSLTIVS---  548 (2195)
T ss_pred             hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh---hHHHHHHHHhhhcceEEee---
Confidence            88886 99999999986321    1356677778888776654444322222211   1244566655443321110   


Q ss_pred             hhHHHHHHhh-cCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccc
Q 048744          156 EHVGSILVNI-SKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEA  212 (312)
Q Consensus       156 ~~la~vl~Nl-S~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~  212 (312)
                      +-. ..|.|| .+.|+-.+++.+.+.  +..|...+.+++.---+|.++++||.-=-.
T Consensus       549 NaC-GTLWNLSAR~p~DQq~LwD~gA--v~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  549 NAC-GTLWNLSARSPEDQQMLWDDGA--VPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             cch-hhhhhhhcCCHHHHHHHHhccc--HHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            114 345565 578888899988764  333333334444445588999999986443

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=93.09  E-value=1.8  Score=44.68  Aligned_cols=274  Identities=18%  Similarity=0.253  Sum_probs=116.3

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHHHh
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAGKM   82 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~~l   82 (312)
                      +.+++..-+ +.+.+|+.|.+.|--+-..-+..      .+.+|.+++.||.|. ..+++.|+..|..+|.+ ++....+
T Consensus        25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l------~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv   97 (556)
T PF05918_consen   25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDL------QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV   97 (556)
T ss_dssp             HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGG------HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH
T ss_pred             HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH
Confidence            444555444 46889999999998887764441      125799999999998 89999999999999976 3333333


Q ss_pred             hh--------h-----hHHH-HHHHHH-cCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhh--------------hhh
Q 048744           83 VQ--------M-----GMIK-TAMDLL-YKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQ--------------IQG  133 (312)
Q Consensus        83 ~~--------~-----~~i~-~lv~~i-~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~--------------~~~  133 (312)
                      ++        +     .+|. .|++.+ .||...+..+..-++++-+..+.-.++++....++              .+.
T Consensus        98 aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~  177 (556)
T PF05918_consen   98 ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEE  177 (556)
T ss_dssp             HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHH
Confidence            21        1     2233 233332 23333444444444433223332233444332211              111


Q ss_pred             hhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcC-----Chhhhhhhcccccchhhhh-hh-cccCCchhhHhhHHHHHH
Q 048744          134 LYVMKLVRSFCRSSSEASDDPFEHVGSILVNISK-----KEAGRKILLDPKRGLLKQI-VR-QFDSSNYLRKKGVSGTIR  206 (312)
Q Consensus       134 ~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~-----~~~gR~~~l~~~~~~l~~l-l~-~~~~~s~iRR~gva~~ik  206 (312)
                       ++...+.-....   -..+.++.+-.+|..+..     .++||+.+++-   +..+. |. .+...++-.=.-++.+++
T Consensus       178 -~i~~~ikkvL~D---VTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~i---i~eQa~Ld~~f~~sD~e~Idrli~C~~  250 (556)
T PF05918_consen  178 -FIVDEIKKVLQD---VTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDI---IEEQADLDQPFDPSDPESIDRLISCLR  250 (556)
T ss_dssp             -HHHHHHHHHCTT-----HHHHHHHHHHHHTSGG---GSSHHHHHHHHHH---HHHHHTTTS---SSSHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHh---ccHHHHHHHHHHHHhCccccccCChHHHHHHHHH---HHHHhccCCCCCCcCHHHHHHHHHHHH
Confidence             111111111111   112357777788888775     68899888752   11111 11 011111111111233333


Q ss_pred             h--hhccchhhhHHHhhh-------------cc---Chhh--hhhhcccCCCCCChhhhccCcHHhhh---hhccCCCCC
Q 048744          207 N--CCFEAEHQLQNLLLI-------------SE---FLWP--ALLLPVAGNKVYKEEDTSKIPLELAS---ALRIEREPV  263 (312)
Q Consensus       207 N--ccF~~~~H~~~ll~~-------------~~---~~lp--~lLlPlaG~ee~~~ee~~~lp~~Lq~---~l~~~re~e  263 (312)
                      .  -+|....|...++.-             ++   ++|-  +-+-|.+|+.+    -.+.||.-.+.   |.|.. .  
T Consensus       251 ~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d----~~~~L~~i~~~L~~ymP~~-~--  323 (556)
T PF05918_consen  251 QALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD----ARQLLPSIFQLLKKYMPSK-K--  323 (556)
T ss_dssp             HHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T----HHHHHHHHHHHHHTTS-------
T ss_pred             HhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc----HHHHHHHHHHHHHHhCCCC-C--
Confidence            2  233333332122221             01   3333  23567777443    23334555554   34422 2  


Q ss_pred             CChHHHHHHHHHHHHHhcCHhHHH---HHHhCCcchhccc
Q 048744          264 DDPEIRIQALESIYLITLQEAGLR---AFWSVNGPRLVHG  300 (312)
Q Consensus       264 ~d~~Ir~~llE~Ll~L~~t~~gR~---~lr~~~vy~vlr~  300 (312)
                      +.|++...++|||+.-.. .-|+.   .+.....|.++-.
T Consensus       324 ~~~~l~fs~vEcLL~afh-~La~k~p~~~~~lCgyk~vtg  362 (556)
T PF05918_consen  324 TEPKLQFSYVECLLYAFH-QLARKSPNSLNFLCGYKIVTG  362 (556)
T ss_dssp             ------HHHHHHHHHHHH-HHHTT-THHHH----------
T ss_pred             CCCcccchHhhHHHHHHH-HHhhhCcchhhhHhhhccccc
Confidence            368999999999987665 33444   5566666665543

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=92.78  E-value=0.25  Score=31.50  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=33.9

Q ss_pred             hHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744           77 ELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ  115 (312)
Q Consensus        77 ~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~  115 (312)
                      ..+..+.+.|+++.++..+..++......++..|.||+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            356777788999999999998888999999999999974

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.76  E-value=1.2  Score=43.17  Aligned_cols=199  Identities=14%  Similarity=0.175  Sum_probs=124.4

Q ss_pred             CcchHHHHHh-ccC-CCCHHHHHHHHHHHHhcCCCccchh----------hhhhcccchHHHHHHhhccC--ccchhhHH
Q 048744            1 MANELEELLG-FLC-SPSPSVKKAAVDIVRGLTGSEDGLQ----------SLSKYSKIALPSLARLLSEN--KEVSEPAT   66 (312)
Q Consensus         1 m~~~l~ELv~-FL~-~~~~~vR~~Al~~llgls~~~~~~~----------~i~~~~~~~i~~L~~L~~d~--~~~~~~Al   66 (312)
                      |...+.||+- -|. ++..++-+.+...+.-++..++-|-          .|.+.  +.+..|...+..+  +.+-.++.
T Consensus       186 m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e--~~l~~L~Eal~A~~dp~~L~~l~  263 (461)
T KOG4199|consen  186 MELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKE--GILTALTEALQAGIDPDSLVSLS  263 (461)
T ss_pred             HHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHh--hhHHHHHHHHHccCCccHHHHHH
Confidence            3344555553 444 5555566667777777776666332          22232  3566777777665  67777888


Q ss_pred             HHHHhcCCChhHHHHhhhhhHHHHHHHHHcCCCC----hhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHH
Q 048744           67 EALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDS----SITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRS  142 (312)
Q Consensus        67 ~~LiNLS~d~~~~~~l~~~~~i~~lv~~i~~~~~----~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~  142 (312)
                      ++|--|.-..+++..+.+.|-+..+++.+.|.+.    .++..+|.+|+-|+-+++....+.+.+.  .+  .|..|+..
T Consensus       264 ~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg--~~--~ii~l~~~  339 (461)
T KOG4199|consen  264 TTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGG--LD--KIITLALR  339 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcC--hH--HHHHHHHH
Confidence            8888888888999999999999999999987443    4888999999999999998888887652  12  24455555


Q ss_pred             HhcCCCCCCCCchhhHHHHHHhh----cCChhhhhhhcccccch--hhhhhhcccCCchhhHhhHHHHHHhhhccchhh
Q 048744          143 FCRSSSEASDDPFEHVGSILVNI----SKKEAGRKILLDPKRGL--LKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ  215 (312)
Q Consensus       143 f~~~~~~~~~~~~~~la~vl~Nl----S~~~~gR~~~l~~~~~~--l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H  215 (312)
                      |....        .-+..+.+=+    =+.|+.-..+++.+.+.  ++.+=.+ . .-..-.+.....|||..--....
T Consensus       340 h~~~p--------~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah-P-~~a~vQrnac~~IRNiv~rs~~~  408 (461)
T KOG4199|consen  340 HSDDP--------LVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH-P-VAAQVQRNACNMIRNIVVRSAEN  408 (461)
T ss_pred             cCCCh--------HHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHhhhhc
Confidence            54331        1122222222    35666666667765432  2222111 1 12233455677888887544444

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.72  E-value=0.52  Score=49.12  Aligned_cols=234  Identities=14%  Similarity=0.191  Sum_probs=120.4

Q ss_pred             hHHHHHhccC---CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHh-cC-CChhH
Q 048744            4 ELEELLGFLC---SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVN-LS-QNSEL   78 (312)
Q Consensus         4 ~l~ELv~FL~---~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiN-LS-~d~~~   78 (312)
                      .+.++++.|+   ++++++|+.+...+..+-.-++-..++       +--|.+.-++...++.-|=..|-| +- +....
T Consensus        11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL-------~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~   83 (885)
T KOG2023|consen   11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYL-------IYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSI   83 (885)
T ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhcee-------eEEEecccccchhHHHHhhhhHhccccccccCC
Confidence            4677777777   689999999999998886555433221       112222222221111111112222 10 11111


Q ss_pred             HHHhhhhhHHH-HHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744           79 AGKMVQMGMIK-TAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH  157 (312)
Q Consensus        79 ~~~l~~~~~i~-~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~  157 (312)
                      ...  ..++|. .++..+.|+++....-.-.+.+-+.... |.        ..++. .+++|++++...+++...+.+.-
T Consensus        84 ~~~--~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~-~~--------~~wpe-lLp~L~~~L~s~d~n~~EgA~~A  151 (885)
T KOG2023|consen   84 PSE--VLDYIKSECLHGLGDASPLIRATVGIVITTIASTG-GL--------QHWPE-LLPQLCELLDSPDYNTCEGAFGA  151 (885)
T ss_pred             ChH--HHHHHHHHHHhhccCchHHHHhhhhheeeeeeccc-cc--------ccchh-HHHHHHHHhcCCcccccchhHHH
Confidence            111  014444 3555555544422211112211111111 01        11222 37899999999998876666666


Q ss_pred             HHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744          158 VGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN  237 (312)
Q Consensus       158 la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~  237 (312)
                      |..|.-+-++.-+ +++.-+|-+-.+.+++.+++|+|+.-|..+++++-..-.....   .+...=+. +--.|+-+|+ 
T Consensus       152 L~KIcEDsa~~ld-s~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q---al~~~iD~-Fle~lFalan-  225 (885)
T KOG2023|consen  152 LQKICEDSAQFLD-SDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ---ALYVHIDK-FLEILFALAN-  225 (885)
T ss_pred             HHHHHhhhHHHHh-hhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH---HHHHHHHH-HHHHHHHHcc-
Confidence            6666655544332 2233233334667788788999999999999887433322111   11110000 0012222332 


Q ss_pred             CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHH
Q 048744          238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLR  287 (312)
Q Consensus       238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~  287 (312)
                                               ++||++|+.++.+|..|.-+|--|-
T Consensus       226 -------------------------D~~~eVRk~vC~alv~Llevr~dkl  250 (885)
T KOG2023|consen  226 -------------------------DEDPEVRKNVCRALVFLLEVRPDKL  250 (885)
T ss_pred             -------------------------CCCHHHHHHHHHHHHHHHHhcHHhc
Confidence                                     2389999999999999987776553

>PF05536 Neurochondrin: Neurochondrin

Probab=92.20  E-value=2.9  Score=43.12  Aligned_cols=121  Identities=22%  Similarity=0.254  Sum_probs=87.1

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCcc----chhhhhhcccchHHHHHHhhccC--------ccchhhHHHHHH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSED----GLQSLSKYSKIALPSLARLLSEN--------KEVSEPATEALV   70 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~----~~~~i~~~~~~~i~~L~~L~~d~--------~~~~~~Al~~Li   70 (312)
                      ..+++-+..|++.+.+=|=.|+-.+-.+-.+.+    .++.|+..- + .+=|-||+..+        ..-..-|++.|-
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~ai-g-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~   82 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAI-G-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA   82 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc-C-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            458889999998885556666666666655533    233566432 1 23445554331        234567899999


Q ss_pred             hcCCChhHHHH--hhhhhHHHHHHHHHcCCCC-hhHHHHHHHHHhhcCCccchHHHhhhh
Q 048744           71 NLSQNSELAGK--MVQMGMIKTAMDLLYKPDS-SITRLLVMLLVNLTQLDYGISSLLQVE  127 (312)
Q Consensus        71 NLS~d~~~~~~--l~~~~~i~~lv~~i~~~~~-~~ad~a~mLLsNLT~~~~~~~~ll~~~  127 (312)
                      -+|.+|+++..  ++  +-|+.+++.+.+... ...+.|...|.+++.+++|...+++.+
T Consensus        83 ~f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g  140 (543)
T PF05536_consen   83 AFCRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESG  140 (543)
T ss_pred             HHcCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcC
Confidence            99999887643  22  678899999988777 899999999999999999999998854

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=92.13  E-value=3.3  Score=36.43  Aligned_cols=147  Identities=21%  Similarity=0.246  Sum_probs=87.4

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHHHh
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAGKM   82 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~~l   82 (312)
                      ++.+++..-+++..||..|++.|--.-  ..|   + .++..++|.|+.|..|. +.+++.|...|..+.. .+.....=
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il--~qG---L-vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~   83 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELIL--RQG---L-VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR   83 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHH--hcC---C-CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            567888778999999999999885442  223   2 24446899999999998 8999999999999964 44443332


Q ss_pred             hhhhHHHHHHHHHcC--CCCh------hHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCC----CCC
Q 048744           83 VQMGMIKTAMDLLYK--PDSS------ITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSS----SEA  150 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~--~~~~------~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~----~~~  150 (312)
                      .. ..|...+++-..  ++..      .......+-+.+....+...+            .+..|+..|....    .+.
T Consensus        84 ~~-~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~------------Fl~~l~k~f~~~~~~~~~~~  150 (187)
T PF12830_consen   84 YS-EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK------------FLKSLLKQFDFDLTKLSSES  150 (187)
T ss_pred             HH-HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH------------HHHHHHHHHHhhcccccccc
Confidence            22 234444444321  2211      111111222222222222222            3556666665543    112


Q ss_pred             CCCchhhHHHHHHhhcCChh
Q 048744          151 SDDPFEHVGSILVNISKKEA  170 (312)
Q Consensus       151 ~~~~~~~la~vl~NlS~~~~  170 (312)
                      .....+|+.++.-|++.+|=
T Consensus       151 ~~~~l~~~~Fla~nLA~l~y  170 (187)
T PF12830_consen  151 SPSDLDFLLFLAENLATLPY  170 (187)
T ss_pred             chhHHHHHHHHHHHHhcCCC
Confidence            33458888898999988773

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=91.03  E-value=1.4  Score=38.33  Aligned_cols=66  Identities=21%  Similarity=0.283  Sum_probs=50.8

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN   75 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d   75 (312)
                      ++.+...|++++|.||+.|+..|.-|-..+     ..+..+.++..++.++.|. +.++..|..++..++..
T Consensus        27 ~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   27 LPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            567888999999999999999998875332     1232223446777888888 89999999999999855

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.71  E-value=0.54  Score=47.13  Aligned_cols=56  Identities=29%  Similarity=0.379  Sum_probs=27.7

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc
Q 048744           12 LCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL   72 (312)
Q Consensus        12 L~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL   72 (312)
                      |.+++|.||+.|+-.+..+....+.   +...  .+++.+..++.|. +.+...|+.++..+
T Consensus       123 l~~~~~~VRk~A~~~l~~i~~~~p~---~~~~--~~~~~l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  123 LSDPSPYVRKKAALALLKIYRKDPD---LVED--ELIPKLKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             HHSSSHHHHHHHHHHHHHHHHHCHC---CHHG--GHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHHhccCHH---HHHH--HHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence            3455666666665555555332211   1111  1455566665555 45555555555555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=90.22  E-value=1  Score=39.20  Aligned_cols=90  Identities=23%  Similarity=0.314  Sum_probs=70.5

Q ss_pred             CHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhh-h-HHHHHH
Q 048744           16 SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQM-G-MIKTAM   92 (312)
Q Consensus        16 ~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~-~-~i~~lv   92 (312)
                      +|.||..|+..+-.+...-++   +.   +..++.+...+.|. +.+++.|+.+|..|-..+     .++. | .+..++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~---~v---e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l   69 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN---LV---EPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRIL   69 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH---HH---HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHH
Confidence            588999999999888655444   22   24688999999999 899999999999985432     2332 3 336777


Q ss_pred             HHHcCCCChhHHHHHHHHHhhcCC
Q 048744           93 DLLYKPDSSITRLLVMLLVNLTQL  116 (312)
Q Consensus        93 ~~i~~~~~~~ad~a~mLLsNLT~~  116 (312)
                      ..+.|+++..++.|...+..+.+.
T Consensus        70 ~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   70 KLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHh
Confidence            888999999999999999998877

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=89.83  E-value=1.4  Score=48.40  Aligned_cols=111  Identities=18%  Similarity=0.260  Sum_probs=92.6

Q ss_pred             HHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhHHHHhh
Q 048744            5 LEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMV   83 (312)
Q Consensus         5 l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~~l~   83 (312)
                      ++-++..|. +..++|++.|++.+.-+|...+-..-+...  +.+-.|+.+++..+.-..-++..|.-|+..+.+...-.
T Consensus      1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~--~vL~~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATC--NVLTTLLTLLHSQPSMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred             cHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhh--hHHHHHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            345666777 578999999999999999998877777653  57889999999998889999999999999999998888


Q ss_pred             hhhHHHHHHHHHcCCCCh-hHHHHHHHHHhhcCCc
Q 048744           84 QMGMIKTAMDLLYKPDSS-ITRLLVMLLVNLTQLD  117 (312)
Q Consensus        84 ~~~~i~~lv~~i~~~~~~-~ad~a~mLLsNLT~~~  117 (312)
                      +.|.+..+.+++++.+.+ ..-.++.||+.|+..+
T Consensus      1851 ~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1851 EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred             hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence            889999999999887764 3446778888887665

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=89.74  E-value=17  Score=36.46  Aligned_cols=195  Identities=11%  Similarity=0.083  Sum_probs=118.2

Q ss_pred             HHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcc----cchHHHHHHhhccC-ccchhhHHHHHHhcCCChhH
Q 048744            5 LEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYS----KIALPSLARLLSEN-KEVSEPATEALVNLSQNSEL   78 (312)
Q Consensus         5 l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~----~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~   78 (312)
                      ..-++.+|+ ..++++.+..+..+-.+-...+.+..+|...    +..-...++++..+ ..+...|..+|..+......
T Consensus        55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~  134 (429)
T cd00256          55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA  134 (429)
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence            345777888 4799999999998888877766655555321    12344555566555 78889999999988543211


Q ss_pred             HHHhhhh-hHHHHHHHHHcCCC-ChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchh
Q 048744           79 AGKMVQM-GMIKTAMDLLYKPD-SSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFE  156 (312)
Q Consensus        79 ~~~l~~~-~~i~~lv~~i~~~~-~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~  156 (312)
                      ...-... -++..+.+.+.++. ....+.+...|++|-+.+.....+.+..     |  +..|++.+..... +-.-.|+
T Consensus       135 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~-----~--v~~L~~~L~~~~~-~~Ql~Y~  206 (429)
T cd00256         135 KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD-----G--VPTLVKLLSNATL-GFQLQYQ  206 (429)
T ss_pred             ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc-----C--HHHHHHHHhhccc-cHHHHHH
Confidence            1010011 24445666666543 5567778889999999998665554432     2  5677777654321 1111233


Q ss_pred             hHHHHHHhhcCChhhhhhhcccccchhhhhhhccc--CCchhhHhhHHHHHHhhhcc
Q 048744          157 HVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFD--SSNYLRKKGVSGTIRNCCFE  211 (312)
Q Consensus       157 ~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~--~~s~iRR~gva~~ikNccF~  211 (312)
                       +..++==+|=.+++-..+.+.  +++..++..+.  .+-.+= +-+.+|+||++-.
T Consensus       207 -~ll~lWlLSF~~~~~~~~~~~--~~i~~l~~i~k~s~KEKvv-Rv~l~~l~Nll~~  259 (429)
T cd00256         207 -SIFCIWLLTFNPHAAEVLKRL--SLIQDLSDILKESTKEKVI-RIVLAIFRNLISK  259 (429)
T ss_pred             -HHHHHHHHhccHHHHHhhccc--cHHHHHHHHHHhhhhHHHH-HHHHHHHHHHhhc
Confidence             336666688888877766443  46666665432  122222 3467899999963

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.73  E-value=1.3  Score=47.45  Aligned_cols=136  Identities=19%  Similarity=0.186  Sum_probs=90.2

Q ss_pred             HHHHHhccCC-CCHHHHHHHHHHHHhcC--CCccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCC-ChhH
Q 048744            5 LEELLGFLCS-PSPSVKKAAVDIVRGLT--GSEDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQ-NSEL   78 (312)
Q Consensus         5 l~ELv~FL~~-~~~~vR~~Al~~llgls--~~~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~-d~~~   78 (312)
                      +..|++=|.. ..|-.+-.|+.-++..-  ++++-.. .|-. +.++|.|+.|+.+.  ..+-..|.+||.||+. -|.-
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs-~fpv-~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLS-GFPV-KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhc-cccH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            3445555553 35555555555444322  2233222 2322 25899999999887  7899999999999995 5888


Q ss_pred             HHHhhhhhHHHHHHHHHcCCCC-hhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCC
Q 048744           79 AGKMVQMGMIKTAMDLLYKPDS-SITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSS  148 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~~~~~-~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~  148 (312)
                      ...+++.++|+.++..+.-=+. .+|+.+...|--++|.+.  .++++.+.-  .  .....++.|..+..
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l--~--a~LsylDFFSi~aQ  311 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGAL--S--AVLSYLDFFSIHAQ  311 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccH--H--HHHHHHHHHHHHHH
Confidence            8888988899988887654333 588888999999999886  567777531  1  13355666665554

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=88.85  E-value=1.5  Score=34.70  Aligned_cols=67  Identities=25%  Similarity=0.345  Sum_probs=50.0

Q ss_pred             cchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhh--hHHHHHHHHHcCCCChhHHHHHHHHHhhc
Q 048744           45 KIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQM--GMIKTAMDLLYKPDSSITRLLVMLLVNLT  114 (312)
Q Consensus        45 ~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~--~~i~~lv~~i~~~~~~~ad~a~mLLsNLT  114 (312)
                      +.+++.++.++.|+ ..++--|..+|.|++..-  .+.++..  .+...+...+.|+++. ...++.+|.+|=
T Consensus        26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~ll   95 (97)
T PF12755_consen   26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLL   95 (97)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHh
Confidence            36899999999999 889999999999998432  3444432  5566777788888775 456667777663

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=87.99  E-value=0.61  Score=28.64  Aligned_cols=26  Identities=38%  Similarity=0.620  Sum_probs=21.5

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhc
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGL   30 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgl   30 (312)
                      ++-+++.+.|++++||..|+..+-.+
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i   27 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAI   27 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999987654

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=87.94  E-value=0.95  Score=33.74  Aligned_cols=55  Identities=31%  Similarity=0.478  Sum_probs=40.7

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-c-cchhhHHHHH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-K-EVSEPATEAL   69 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~-~~~~~Al~~L   69 (312)
                      ..++.|+++++++++.||..|+..|--+.           . +..++.|..++.++ . .+...|..+|
T Consensus        31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------~-~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   31 EAIPALIELLKDEDPMVRRAAARALGRIG-----------D-PEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------H-HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------C-HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence            45788999999999999999999987661           1 24678888887665 3 3456666665

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=87.87  E-value=1.3  Score=35.01  Aligned_cols=68  Identities=19%  Similarity=0.250  Sum_probs=52.0

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCC
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQ   74 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~   74 (312)
                      ++.++..+.+++..||-.|.+.+-.++....+  .+..+-..+...|.+++.|...-.+.|...|-+|-.
T Consensus        29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   29 LPPVLKCFDDQDSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence            56788889999999999999999999755332  333332368889999999996667788888877643

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=87.59  E-value=12  Score=36.35  Aligned_cols=200  Identities=18%  Similarity=0.272  Sum_probs=115.3

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCcc-chhhhhhcccchHHHHHHhh-ccC-ccchhhHHHHHHhcCCC-hhHHH
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSED-GLQSLSKYSKIALPSLARLL-SEN-KEVSEPATEALVNLSQN-SELAG   80 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~-~~~~i~~~~~~~i~~L~~L~-~d~-~~~~~~Al~~LiNLS~d-~~~~~   80 (312)
                      +..|+.+|.++.+.||..|+..|-....+.+ -.+.++..  ++++.|...+ +++ -.++..|+-|+-+|=-+ +.+..
T Consensus       126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~--~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~  203 (342)
T KOG2160|consen  126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL--GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQD  203 (342)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc--ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHH
Confidence            4567889999999999999999988887744 33345543  4677776665 444 45557788777777643 44455


Q ss_pred             HhhhhhHHHHHHHHHcCC--CChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCC-CCCCCchhh
Q 048744           81 KMVQMGMIKTAMDLLYKP--DSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSS-EASDDPFEH  157 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~--~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~-~~~~~~~~~  157 (312)
                      ...+.+-...|.+.+.++  +......+.-|+++|+..+.....++.       +....+.+..+..... ....+.   
T Consensus       204 ~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~-------~~~f~~~~~~l~~~l~~~~~e~~---  273 (342)
T KOG2160|consen  204 EFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS-------SLGFQRVLENLISSLDFEVNEAA---  273 (342)
T ss_pred             HHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH-------HhhhhHHHHHHhhccchhhhHHH---
Confidence            545543366677777763  446777899999999987753333211       1123445554444322 111111   


Q ss_pred             HHHHHHhhcCChhhhhhhccccc--chhhhhhhcc-cCCchhhHhhHHHHHHhhhccchhhh
Q 048744          158 VGSILVNISKKEAGRKILLDPKR--GLLKQIVRQF-DSSNYLRKKGVSGTIRNCCFEAEHQL  216 (312)
Q Consensus       158 la~vl~NlS~~~~gR~~~l~~~~--~~l~~ll~~~-~~~s~iRR~gva~~ikNccF~~~~H~  216 (312)
                      +..++.=++-.+.+-.++...-.  ..+++..-.. .|...-+++-.+.=+...|++.+.+.
T Consensus       274 l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~~~~e~~~~~  335 (342)
T KOG2160|consen  274 LTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQLVNSLWEICGEVPSIL  335 (342)
T ss_pred             HHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            22333333333333223322211  1233222222 24455677777888888888887774

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=87.39  E-value=1.4  Score=30.26  Aligned_cols=54  Identities=35%  Similarity=0.404  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc
Q 048744           17 PSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL   72 (312)
Q Consensus        17 ~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL   72 (312)
                      |.||..|+..|-.+.......  +....+.+++.|..++.|+ ..++..|+.+|=||
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~--~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPEL--LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHH--HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            579999999886665443322  1112236899999999888 78888999888764

...

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=87.30  E-value=0.74  Score=29.18  Aligned_cols=38  Identities=37%  Similarity=0.414  Sum_probs=29.9

Q ss_pred             cchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC
Q 048744           35 DGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ   74 (312)
Q Consensus        35 ~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~   74 (312)
                      +++..+...  +.++.|+.+++.+ ..+.+.|+.+|-|++.
T Consensus         3 ~~~~~i~~~--g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDA--GGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            355555443  6899999999876 8899999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=87.25  E-value=3.7  Score=44.78  Aligned_cols=91  Identities=16%  Similarity=0.100  Sum_probs=59.2

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhh
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMV   83 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~   83 (312)
                      .+.|..+|.+++++||..|+..|-.+.....          ..++.|..+++|. +.++..|+.+|-++...+.+     
T Consensus       744 ~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~----------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~-----  808 (897)
T PRK13800        744 VESVAGAATDENREVRIAVAKGLATLGAGGA----------PAGDAVRALTGDPDPLVRAAALAALAELGCPPDD-----  808 (897)
T ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccccc----------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchh-----
Confidence            3568889999999999999998877643211          2356777778777 77888888888887654322     


Q ss_pred             hhhHHHHHHHHHcCCCChhHHHHHHHHHhhc
Q 048744           84 QMGMIKTAMDLLYKPDSSITRLLVMLLVNLT  114 (312)
Q Consensus        84 ~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT  114 (312)
                          +..++..+.|+++....-|...|..+.
T Consensus       809 ----~~~l~~aL~d~d~~VR~~Aa~aL~~l~  835 (897)
T PRK13800        809 ----VAAATAALRASAWQVRQGAARALAGAA  835 (897)
T ss_pred             ----HHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence                123444455555544444555555543

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=86.90  E-value=4.7  Score=38.99  Aligned_cols=195  Identities=14%  Similarity=0.115  Sum_probs=122.2

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCC---c---cchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhH
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGS---E---DGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSEL   78 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~---~---~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~   78 (312)
                      +..|+.-|..-.-+.|+.+..+.-.+-.-   .   +..+.|..+.+.++..|+.-.+ .+.++-.+=.+|-....++.+
T Consensus        78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~-~~dial~~g~mlRec~k~e~l  156 (335)
T PF08569_consen   78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE-NPDIALNCGDMLRECIKHESL  156 (335)
T ss_dssp             HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG-STTTHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc-CccccchHHHHHHHHHhhHHH
Confidence            56678888877778888777766544332   1   2345676652355555555333 367788888999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHh-hcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744           79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVN-LTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH  157 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsN-LT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~  157 (312)
                      ++.++....+..+++++..+.-..|-.|...+-= ||++++-+..++..-   ... .....-.++..+.|-.+--++..
T Consensus       157 ~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n---~d~-ff~~~~~Ll~s~NYvtkrqslkL  232 (335)
T PF08569_consen  157 AKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN---YDR-FFQKYNKLLESSNYVTKRQSLKL  232 (335)
T ss_dssp             HHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---HHH-HHHHHHHHCT-SSHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH---HHH-HHHHHHHHccCCCeEeehhhHHH
Confidence            9999999899999999999988777777777666 688887777766432   111 12233333334433322224567


Q ss_pred             HHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHH
Q 048744          158 VGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIR  206 (312)
Q Consensus       158 la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ik  206 (312)
                      |+.+|.|=+-..--.+|+=++.  -++.++..+.++|..-|-.+..++|
T Consensus       233 L~ellldr~n~~vm~~yi~~~~--nLkl~M~lL~d~sk~Iq~eAFhvFK  279 (335)
T PF08569_consen  233 LGELLLDRSNFNVMTRYISSPE--NLKLMMNLLRDKSKNIQFEAFHVFK  279 (335)
T ss_dssp             HHHHHHSGGGHHHHHHHTT-HH--HHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred             HHHHHHchhHHHHHHHHHCCHH--HHHHHHHHhcCcchhhhHHHHHHHH
Confidence            7777777666666666776665  3666666656565444444444443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.40  E-value=4.5  Score=39.36  Aligned_cols=186  Identities=11%  Similarity=0.204  Sum_probs=121.3

Q ss_pred             CHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-----ccchhhHHHHHHhcCCChhHHHHhhhhhHHHH
Q 048744           16 SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-----KEVSEPATEALVNLSQNSELAGKMVQMGMIKT   90 (312)
Q Consensus        16 ~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-----~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~   90 (312)
                      .|++-..+...|-.+...+|-...|...  +-++.|++++.|.     ...+|.+++.|--|....++...|++.|..+.
T Consensus       255 dp~~L~~l~~tl~~lAVr~E~C~~I~e~--GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~  332 (461)
T KOG4199|consen  255 DPDSLVSLSTTLKALAVRDEICKSIAES--GGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDK  332 (461)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHc--cCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHH
Confidence            3565555666665565556666666543  4588999998772     44678888899999999999999999877666


Q ss_pred             HHHHHcC--CCChhHHHHHHHHHhhc-CCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHh-hc
Q 048744           91 AMDLLYK--PDSSITRLLVMLLVNLT-QLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVN-IS  166 (312)
Q Consensus        91 lv~~i~~--~~~~~ad~a~mLLsNLT-~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~N-lS  166 (312)
                      ++.....  .++.....+|..+|=|+ |++.+..++++.+..    ....+-|..|=+...     ...-....+.| ++
T Consensus       333 ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a----~~avqAmkahP~~a~-----vQrnac~~IRNiv~  403 (461)
T KOG4199|consen  333 IITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAA----DLAVQAMKAHPVAAQ-----VQRNACNMIRNIVV  403 (461)
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchH----HHHHHHHHhCcHHHH-----HHHHHHHHHHHHHH
Confidence            5554332  34445666777777775 556667777776531    123455555533221     12224577788 56


Q ss_pred             CChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhh
Q 048744          167 KKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ  215 (312)
Q Consensus       167 ~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H  215 (312)
                      +..+.|..++..+   +.+|+.+-....+.=|.-+-.++|.+-.+....
T Consensus       404 rs~~~~~~~l~~G---iE~Li~~A~~~h~tce~~akaALRDLGc~v~lr  449 (461)
T KOG4199|consen  404 RSAENRTILLANG---IEKLIRTAKANHETCEAAAKAALRDLGCDVYLR  449 (461)
T ss_pred             hhhhccchHHhcc---HHHHHHHHHhcCccHHHHHHHHHHhcCcchhhH
Confidence            7788888888875   777777754444445566667888887765544

>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria

Probab=86.24  E-value=0.48  Score=38.21  Aligned_cols=58  Identities=24%  Similarity=0.199  Sum_probs=37.4

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL   72 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL   72 (312)
                      ++-..|+.+|+|+|++||-.|..+++.+.. .+           +.+.|-.+-+.+ -+.+-+|=.+|-||
T Consensus        47 d~r~aLl~LL~hpn~~VRl~AA~~~L~~~p-~e-----------A~~~Le~ia~~~~~~~a~~a~~~l~~l  105 (106)
T PF09450_consen   47 DQRDALLPLLKHPNMQVRLWAAAHTLRYAP-EE-----------ARKVLEEIASSKWFPQAGDAGMCLRNL  105 (106)
T ss_dssp             -GGGGGGGGGGSS-HHHHHHHHHTTTTT-H-HH-----------HHHHHHHHHHHT-TTHHHHHHHHHHHH
T ss_pred             chHHHHHHHHcCCChhHHHHHHHHHHHhCH-HH-----------HHHHHHHHHHcCCCCCCCcHHHHHHhc
Confidence            456789999999999999999999998752 12           222333333333 45566777777664

; PDB: 2I9C_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=86.11  E-value=3.1  Score=44.39  Aligned_cols=94  Identities=18%  Similarity=0.241  Sum_probs=68.3

Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHHHhhhhhHH
Q 048744           11 FLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAGKMVQMGMI   88 (312)
Q Consensus        11 FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i   88 (312)
                      =|.|+||.+|..|+..+..+-..     .|..   .+++.+++++.|+ +.+++.|+-|++++= .|+...   .+.|.+
T Consensus       100 Dl~d~N~~iR~~AlR~ls~l~~~-----el~~---~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~---~~~g~~  168 (757)
T COG5096         100 DLQDPNEEIRGFALRTLSLLRVK-----ELLG---NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLY---HELGLI  168 (757)
T ss_pred             hccCCCHHHHHHHHHHHHhcChH-----HHHH---HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhh---hcccHH
Confidence            35578999999999988777322     1332   4788999999999 889999999999995 554333   234677


Q ss_pred             HHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744           89 KTAMDLLYKPDSSITRLLVMLLVNLTQ  115 (312)
Q Consensus        89 ~~lv~~i~~~~~~~ad~a~mLLsNLT~  115 (312)
                      ..+...+.|+++.+...|..-|.++-.
T Consensus       169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         169 DILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            777788888888766556555555443

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=84.75  E-value=2.1  Score=39.62  Aligned_cols=80  Identities=20%  Similarity=0.204  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHhcCCCccchhhhhhccc-----chHHHHHHhhccC--ccchhhHHHHHHhcCC-ChhHHHHhhhh-hHH
Q 048744           18 SVKKAAVDIVRGLTGSEDGLQSLSKYSK-----IALPSLARLLSEN--KEVSEPATEALVNLSQ-NSELAGKMVQM-GMI   88 (312)
Q Consensus        18 ~vR~~Al~~llgls~~~~~~~~i~~~~~-----~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~-d~~~~~~l~~~-~~i   88 (312)
                      .=|+.|++.++-++..+.|...|...++     .+..-|++++++.  ...++=|+..|-||++ +..++..+... ++|
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            4489999999999999999887764322     3667888888776  5678899999999995 55666566654 889


Q ss_pred             HHHHHHHcC
Q 048744           89 KTAMDLLYK   97 (312)
Q Consensus        89 ~~lv~~i~~   97 (312)
                      ..|+..|.+
T Consensus       219 ~~Li~FiE~  227 (257)
T PF12031_consen  219 SHLIAFIED  227 (257)
T ss_pred             HHHHHHHHH
Confidence            999998875

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.10  E-value=14  Score=35.93  Aligned_cols=142  Identities=15%  Similarity=0.159  Sum_probs=97.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHHHhhhhhHHHHH
Q 048744           14 SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAGKMVQMGMIKTA   91 (312)
Q Consensus        14 ~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~~l~~~~~i~~l   91 (312)
                      +..++=|..|++.|.-+-.+=++-..|.+.. ++ ..++..+.+. ..++.-|...+--.+++ |.+.+.+.+.|+...|
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~g-gl-~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLG-GL-VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhcc-CH-HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            3467778889998888887755555565553 44 4444477776 78899999999888865 8999999999999999


Q ss_pred             HHHHcCCCChhH-HHHHHHHHhhcCCccchH-HHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhc
Q 048744           92 MDLLYKPDSSIT-RLLVMLLVNLTQLDYGIS-SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNIS  166 (312)
Q Consensus        92 v~~i~~~~~~~a-d~a~mLLsNLT~~~~~~~-~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS  166 (312)
                      +..+....+..+ ..|.--+|+|=|+..... +++..     .|  ..-|.+++..++...+  ..-.+...++++.
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~-----~G--~~~L~~vl~~~~~~~~--lkrK~~~Ll~~Ll  239 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL-----NG--YQVLRDVLQSNNTSVK--LKRKALFLLSLLL  239 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc-----CC--HHHHHHHHHcCCcchH--HHHHHHHHHHHHH
Confidence            999987666555 688888999988886443 33322     23  5577777777644322  1223445555543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=82.32  E-value=15  Score=36.11  Aligned_cols=177  Identities=16%  Similarity=0.200  Sum_probs=108.8

Q ss_pred             CHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHHHhhhhhHHHHHHH
Q 048744           16 SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAGKMVQMGMIKTAMD   93 (312)
Q Consensus        16 ~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i~~lv~   93 (312)
                      +..=|.+|+..+.-+-.-..|.+.+   +.+++++|+.+..+. ..-..-|+..|..++ .+|.+   +...|.+..+++
T Consensus        81 ~~~ER~QALkliR~~l~~~~~~~~~---~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~  154 (371)
T PF14664_consen   81 NDVEREQALKLIRAFLEIKKGPKEI---PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLR  154 (371)
T ss_pred             ChHHHHHHHHHHHHHHHhcCCcccC---CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHH
Confidence            3334778888776655444443333   226778888887776 556777888888887 45543   334577899999


Q ss_pred             HHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCC--C---CchhhHHHHHHhhcCC
Q 048744           94 LLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEAS--D---DPFEHVGSILVNISKK  168 (312)
Q Consensus        94 ~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~--~---~~~~~la~vl~NlS~~  168 (312)
                      .+.++....++..++.+--+=-++.. .+.+..+      +.+..++.-|+...+.+.  +   ..+.-.+.+++=+=+.
T Consensus       155 ~l~d~~~~~~~~l~~~lL~lLd~p~t-R~yl~~~------~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs  227 (371)
T PF14664_consen  155 ALIDGSFSISESLLDTLLYLLDSPRT-RKYLRPG------FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS  227 (371)
T ss_pred             HHHhccHhHHHHHHHHHHHHhCCcch-hhhhcCC------ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc
Confidence            99886656777777777777666653 3333322      236677777776643311  1   1233334444444455


Q ss_pred             hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHH
Q 048744          169 EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTI  205 (312)
Q Consensus       169 ~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~i  205 (312)
                      =.|=-+|..++-..++.++-.+..+++.=|+.|..++
T Consensus       228 W~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll  264 (371)
T PF14664_consen  228 WPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLL  264 (371)
T ss_pred             CCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            5566666665535788888887777776566555544

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=81.45  E-value=14  Score=37.10  Aligned_cols=100  Identities=16%  Similarity=0.225  Sum_probs=80.9

Q ss_pred             CHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC---ccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHH
Q 048744           16 SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN---KEVSEPATEALVNLSQNSELAGKMVQMGMIKTAM   92 (312)
Q Consensus        16 ~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~---~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv   92 (312)
                      +.+.+..|+..+..+-..++.|..+++.+  .++.|+.+++..   .+..=.++-|+-=||=++...+.+.+.++|..++
T Consensus       157 ~~~~~~~~v~~L~~LL~~~~~R~~f~~~~--~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~  234 (429)
T cd00256         157 NNDYVQTAARCLQMLLRVDEYRFAFVLAD--GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLS  234 (429)
T ss_pred             CcchHHHHHHHHHHHhCCchHHHHHHHcc--CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHH
Confidence            56778888888888888888887776653  578888887653   3566778888888998888777776679999999


Q ss_pred             HHHcC-CCChhHHHHHHHHHhhcCCc
Q 048744           93 DLLYK-PDSSITRLLVMLLVNLTQLD  117 (312)
Q Consensus        93 ~~i~~-~~~~~ad~a~mLLsNLT~~~  117 (312)
                      +.+.. ++++....+.++|-||....
T Consensus       235 ~i~k~s~KEKvvRv~l~~l~Nll~~~  260 (429)
T cd00256         235 DILKESTKEKVIRIVLAIFRNLISKR  260 (429)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence            98875 77899999999999998754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus

Probab=81.43  E-value=29  Score=36.88  Aligned_cols=163  Identities=23%  Similarity=0.276  Sum_probs=99.1

Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhh---c-c-------cc----hHHHHHHhhccCccchhhHHHHHH
Q 048744            6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSK---Y-S-------KI----ALPSLARLLSENKEVSEPATEALV   70 (312)
Q Consensus         6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~---~-~-------~~----~i~~L~~L~~d~~~~~~~Al~~Li   70 (312)
                      -.|+.||++.+|.+-..|+.+++..+.++++...+.+   . .       .+    +++.-++-+..+.-..++|...|-
T Consensus       202 ~rLL~lL~~~~Psi~~~~~~~lL~~A~~~~~l~lli~L~~~~~~~~~~~~~~l~~~vle~~l~~i~~~~lt~~e~~qLl~  281 (696)
T PF14838_consen  202 HRLLCLLSSQHPSIAIEAISYLLTKAQNPEHLALLIRLYAGLSVVNFPSLPGLFPAVLEQCLRQIHTNTLTPTEATQLLQ  281 (696)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            3578889999999999999999999888887664432   1 0       01    122222222224446788888888


Q ss_pred             hcCC--------C---hhHHHHhhhh--hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccc---hHHHhhhhhhhhhhh
Q 048744           71 NLSQ--------N---SELAGKMVQM--GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYG---ISSLLQVEDEQIQGL  134 (312)
Q Consensus        71 NLS~--------d---~~~~~~l~~~--~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~---~~~ll~~~~e~~~~~  134 (312)
                      ||..        .   ......+.+.  ..+..+...+..++...+..++.||..+--....   ...++...       
T Consensus       282 NL~~L~k~eks~~~~~~~~~~~l~~Al~~~L~~i~~lL~~~~~~~~~~~v~lL~~l~~~~~~~~~~~~~L~l~-------  354 (696)
T PF14838_consen  282 NLALLAKWEKSGNVPPASMSSQLTQALSSHLPDIAQLLLHSDPEVAHAAVKLLDLLPLPEKAPLSPSLLLKLS-------  354 (696)
T ss_pred             HHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCccccCCCHHHHHHHH-------
Confidence            8842        1   1133444443  4566667777678888999999999998766632   12222111       


Q ss_pred             hHHHHHHHHhc----CCCCCCCCchhhHHHHHHhhcCC-hhhhhhhcc
Q 048744          135 YVMKLVRSFCR----SSSEASDDPFEHVGSILVNISKK-EAGRKILLD  177 (312)
Q Consensus       135 ~l~~Ll~~f~~----~~~~~~~~~~~~la~vl~NlS~~-~~gR~~~l~  177 (312)
                        ...+..|..    .+..++...+++.-.+|.-+++. |.+|...++
T Consensus       355 --~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~~l~~~s~~a~~~vLr  400 (696)
T PF14838_consen  355 --RALVKYFFLCLHEKDVSGKQEGLKRCCQLLSRLCSYSPAARKAVLR  400 (696)
T ss_pred             --HHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence              133344432    22222333466777788887777 788876653

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=81.27  E-value=4.4  Score=27.73  Aligned_cols=53  Identities=26%  Similarity=0.244  Sum_probs=39.4

Q ss_pred             cchhhHHHHHHhcCCCh-hHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhh
Q 048744           60 EVSEPATEALVNLSQNS-ELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNL  113 (312)
Q Consensus        60 ~~~~~Al~~LiNLS~d~-~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNL  113 (312)
                      .++..|+.+|=+++... ...+. .-...++.++..+.|+++.....||--|.||
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            35677889998887543 33322 2247888999999998888888999888875

...

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=80.98  E-value=44  Score=32.76  Aligned_cols=160  Identities=21%  Similarity=0.253  Sum_probs=104.1

Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhc-cC--ccchhhHHHH---HHhcCCChhHHHHhhh
Q 048744           11 FLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLS-EN--KEVSEPATEA---LVNLSQNSELAGKMVQ   84 (312)
Q Consensus        11 FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~-d~--~~~~~~Al~~---LiNLS~d~~~~~~l~~   84 (312)
                      +|++. .+||..|...+.=+..+.+..+.+.+..  +=--+++.+. +.  ..++.+|++.   ++..-+.+   +. ..
T Consensus        34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~--id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~---~~-~~  106 (371)
T PF14664_consen   34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLH--IDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP---KE-IP  106 (371)
T ss_pred             HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcC--CchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc---cc-CC
Confidence            45555 9999999999988888877777665532  1112333332 22  3355567654   44442221   11 24


Q ss_pred             hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHh
Q 048744           85 MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVN  164 (312)
Q Consensus        85 ~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~N  164 (312)
                      .+.+..++....+++..+...|...|+=++-.+...  +...     .|  +..|++.+..|.+.    --+.+..+|..
T Consensus       107 ~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l--v~~~-----gG--~~~L~~~l~d~~~~----~~~~l~~~lL~  173 (371)
T PF14664_consen  107 RGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL--VAEC-----GG--IRVLLRALIDGSFS----ISESLLDTLLY  173 (371)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH--HHHc-----CC--HHHHHHHHHhccHh----HHHHHHHHHHH
Confidence            478888999998899999999999999888776422  2222     23  67888888876543    23557888889


Q ss_pred             hcCChhhhhhhcccccchhhhhhhccc
Q 048744          165 ISKKEAGRKILLDPKRGLLKQIVRQFD  191 (312)
Q Consensus       165 lS~~~~gR~~~l~~~~~~l~~ll~~~~  191 (312)
                      +=..|+-|+|+...-. +-..+-|+++
T Consensus       174 lLd~p~tR~yl~~~~d-L~~l~apftd  199 (371)
T PF14664_consen  174 LLDSPRTRKYLRPGFD-LESLLAPFTD  199 (371)
T ss_pred             HhCCcchhhhhcCCcc-HHHHHHhhhh
Confidence            9999999999976432 2233445544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-09
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-09
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-09
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-09
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-04
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-04
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	9e-08
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-06
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-05
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-06
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-05
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-04
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-06
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-05
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-06
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-06
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-06
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-05
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-05
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-05
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-04

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 62.6 bits (152), Expect = 4e-11
 Identities = 32/214 (14%), Positives = 76/214 (35%), Gaps = 15/214 (7%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL--SENKEVS 62
           + EL   L      V   A  +V  L+  E    ++ +  +  + ++ R +  + + E +
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ-MVSAIVRTMQNTNDVETA 74

Query: 63  EPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISS 122
                 L NLS + E    + + G I   + +L  P  S+    +  L NL     G   
Sbjct: 75  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134

Query: 123 LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGL 182
            +++         + K+V    +++ +            L  ++      K+++    G 
Sbjct: 135 AVRLAG------GLQKMVALLNKTNVKFL----AITTDCLQILAYGNQESKLIIL-ASGG 183

Query: 183 LKQIVRQFDSSNYLRKK-GVSGTIRNCCFEAEHQ 215
            + +V    +  Y +     S  ++     + ++
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 217

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 55.3 bits (133), Expect = 9e-09
 Identities = 29/232 (12%), Positives = 76/232 (32%), Gaps = 20/232 (8%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL--SENKEVS 62
           L++++  L   +        D ++ L       + +   S     +L  ++     +++ 
Sbjct: 142 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-GPQALVNIMRTYTYEKLL 200

Query: 63  EPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISS 122
              +  L  LS  S     +V+ G ++     L  P   + +  +  L NL+        
Sbjct: 201 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-------- 252

Query: 123 LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGL 182
                 +Q     ++  +     S              IL N++      K+++    G+
Sbjct: 253 --DAATKQEGMEGLLGTLVQLLGSDDINV---VTCAAGILSNLTCNNYKNKMMVCQVGGI 307

Query: 183 --LKQIVRQFDSSNYLRKKGVSGTIRNCCF-EAEHQLQNLLLISEFLWPALL 231
             L + V +      + +  +   +R+      E ++    +   +  P ++
Sbjct: 308 EALVRTVLRAGDREDITEPAIC-ALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 49.5 bits (118), Expect = 8e-07
 Identities = 25/222 (11%), Positives = 64/222 (28%), Gaps = 17/222 (7%)

Query: 14  SPSPSVKKAAVDIVRGLT--GSEDGLQSLSKYSKIALPSLARLL--SENKEVSEPATEAL 69
                + + A+  +R LT    E  +   +      LP + +LL    +  + +     +
Sbjct: 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 377

Query: 70  VNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD-----------Y 118
            NL+        + + G I   + LL +      R   M       ++            
Sbjct: 378 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT 437

Query: 119 GISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDP 178
           G   +L  +      +  +  +  F +      ++       +L  +++ +   + +   
Sbjct: 438 GALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAE 497

Query: 179 KRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLL 220
             G    +     S N       +  +     +     +  L
Sbjct: 498 --GATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL 537

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 3/114 (2%)

Query: 2   ANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL-SENKE 60
           +    +           + +     +  L         +   +   +P   +LL S  + 
Sbjct: 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN--TIPLFVQLLYSPIEN 472

Query: 61  VSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLT 114
           +   A   L  L+Q+ E A  +   G      +LL+  +  +      +L  ++
Sbjct: 473 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 61.6 bits (149), Expect = 8e-11
 Identities = 33/217 (15%), Positives = 78/217 (35%), Gaps = 15/217 (6%)

Query: 2   ANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL--SENK 59
              + EL   L      V   A  +V  L+  E    ++ + S   + ++ R +  + + 
Sbjct: 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR-SPQMVSAIVRTMQNTNDV 207

Query: 60  EVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYG 119
           E +   +  L NLS + E    + + G I   +++L  P  S+    +  L NL     G
Sbjct: 208 ETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267

Query: 120 ISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPK 179
               +++         + K+V    +++ +            L  ++      K+++   
Sbjct: 268 AKMAVRLAG------GLQKMVALLNKTNVKFL----AITTDCLQILAYGNQESKLIIL-A 316

Query: 180 RGLLKQIVRQFDSSNYLRKK-GVSGTIRNCCFEAEHQ 215
            G  + +V    +  Y +     S  ++     + ++
Sbjct: 317 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 353

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 57.0 bits (137), Expect = 3e-09
 Identities = 28/232 (12%), Positives = 77/232 (33%), Gaps = 20/232 (8%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL--SENKEVS 62
           L++++  L   +        D ++ L       + +   S     +L  ++     +++ 
Sbjct: 278 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-GPQALVNIMRTYTYEKLL 336

Query: 63  EPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISS 122
              +  L  LS  S     +V+ G ++     L  P   + +  +  L NL+        
Sbjct: 337 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-------- 388

Query: 123 LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGL 182
                D   +   +  L+ +  +       +       IL N++      K+++  + G 
Sbjct: 389 -----DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGG 442

Query: 183 LKQIVR--QFDSSNYLRKKGVSGTIRNCCFEAEH-QLQNLLLISEFLWPALL 231
           ++ +VR            +     +R+     +  ++    +   +  P ++
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 17/222 (7%)

Query: 14  SPSPSVKKAAVDIVRGLT--GSEDGLQSLSKYSKIALPSLARLL--SENKEVSEPATEAL 69
                + + A+  +R LT    +  +   +      LP + +LL    +  + +     +
Sbjct: 454 GDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 513

Query: 70  VNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY----------- 118
            NL+        + + G I   + LL +      R   M       ++            
Sbjct: 514 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACT 573

Query: 119 GISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDP 178
           G   +L  +      +  +  +  F +      ++       +L  +++ +   + +   
Sbjct: 574 GALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAE 633

Query: 179 KRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLL 220
             G    +     S N       +  +     +     +  L
Sbjct: 634 --GATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL 673

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 32/214 (14%), Positives = 76/214 (35%), Gaps = 15/214 (7%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL--SENKEVS 62
           + EL   L      V   A  +V  L+  E    ++ +  +  + ++ R +  + + E +
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ-MVSAIVRTMQNTNDVETA 77

Query: 63  EPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISS 122
                 L NLS + E    + + G I   + +L  P  S+    +  L NL     G   
Sbjct: 78  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137

Query: 123 LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGL 182
            +++         + K+V    +++ +            L  ++      K+++    G 
Sbjct: 138 AVRLAG------GLQKMVALLNKTNVKFL----AITTDCLQILAYGNQESKLIIL-ASGG 186

Query: 183 LKQIVRQFDSSNYLRKK-GVSGTIRNCCFEAEHQ 215
            + +V    +  Y +     S  ++     + ++
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 29/232 (12%), Positives = 75/232 (32%), Gaps = 20/232 (8%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL--SENKEVS 62
           L++++  L   +        D ++ L       + +   S     +L  ++     +++ 
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-GPQALVNIMRTYTYEKLL 203

Query: 63  EPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISS 122
              +  L  LS  S     +V+ G ++     L  P   + +  +  L NL+        
Sbjct: 204 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-------- 255

Query: 123 LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGL 182
                 +Q     ++  +     S              IL N++      K+++  + G 
Sbjct: 256 --DAATKQEGMEGLLGTLVQLLGSDDINV---VTCAAGILSNLTCNNYKNKMMVC-QVGG 309

Query: 183 LKQIVR--QFDSSNYLRKKGVSGTIRNCCF-EAEHQLQNLLLISEFLWPALL 231
           ++ +VR            +     +R+      E ++    +   +  P ++
Sbjct: 310 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 3/114 (2%)

Query: 2   ANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL-SENKE 60
           +    +           + +     +  L         +   +   +P   +LL S  + 
Sbjct: 418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN--TIPLFVQLLYSPIEN 475

Query: 61  VSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLT 114
           +   A   L  L+Q+ E A  +   G      +LL+  +  +      +L  ++
Sbjct: 476 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 38/167 (22%)

Query: 2   ANELEELLGFLCSPSP-SVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLS---- 56
              L  ++  L  PS   + KA V ++R L         L +    A+P L +LL     
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG--AIPRLVQLLVRAHQ 411

Query: 57  -------------------ENKEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYK 97
                                +E+ E  T AL  L+++      +  +  I   + LLY 
Sbjct: 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS 471

Query: 98  PDSSITRLLVMLLVNLTQ--------LDYG----ISSLLQVEDEQIQ 132
           P  +I R+   +L  L Q           G    ++ LL   +E + 
Sbjct: 472 PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVA 518

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 51.1 bits (122), Expect = 9e-08
 Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 18/229 (7%)

Query: 1   MANELEELLGFLCSPS--PSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL-SE 57
           M   LE  +  L +    PS   AA   ++     +   +         +  L +LL  +
Sbjct: 6   MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRV-NQLRGILKLLQLLKVQ 64

Query: 58  NKEVSEPATEALVNLS-QNSELAGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQ 115
           N++V      AL NL  ++++   ++ ++  +   + +L +  D    + +  LL NL+ 
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 116 LDYG----ISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNIS-KKEA 170
            D      I+  L    E I   +       + +++     D F +V   L N+S     
Sbjct: 125 NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD 184

Query: 171 GRKILLDPKRGL---LKQIVRQFDSSNYLRKKGVS---GTIRNCCFEAE 213
           GRK +     GL   L   VR   +      K        + N  ++ E
Sbjct: 185 GRKAMRR-CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQLE 232

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 50/353 (14%), Positives = 108/353 (30%), Gaps = 50/353 (14%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL-------SE 57
           ++ L     S +  ++  A+  +  L        ++  +   A   LA           +
Sbjct: 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGK 391

Query: 58  NKEVSEPATEALVNLSQNSELAGKMVQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQL 116
           +K++   A + L  L+ ++E   K+++    I   MDL    + S    +V   VNL   
Sbjct: 392 DKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNA 451

Query: 117 DYGISSLLQV----------------------EDEQIQGLYVMKLVRSFCRSSSEASDDP 154
                 L ++                       +++I  L    +  + C  +   S + 
Sbjct: 452 YEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNS 511

Query: 155 FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEH 214
            E +  +L  +   +  R  ++  + G +K ++R         K+  +  +         
Sbjct: 512 QELIARVLNAVCGLKELRGKVV--QEGGVKALLRMALEGTEKGKRHATQALARIGITINP 569

Query: 215 QLQNLLLISEFLWPAL--LLPVAGNKVYK--------------EEDTSKIPLELASALRI 258
           ++      S  +   L  LL      +                E    +I  E   +   
Sbjct: 570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIE 629

Query: 259 EREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNG--PRLVHGSGTEDPSTQ 309
                D   +   A + +  + + E  ++ F   N     L      ED  T 
Sbjct: 630 YYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETA 682

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 3/119 (2%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL-SENKEVSE 63
           ++ L             A    +  +T                L  L  L+ + +  V  
Sbjct: 667 VKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQH 726

Query: 64  PATEALVNL-SQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQL-DYGI 120
                ++N+ +   E+A K+ +  +++    L   PD +  +   +    L     Y I
Sbjct: 727 RGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 12/186 (6%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGL-TGSEDGLQSLSKYSKIALPSLARLL-SENKEVS 62
            + L+  L   S  V+  A+  V  + TG++   Q +       LP+L  LL S  + + 
Sbjct: 301 PKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG--VLPALRLLLSSPKENIK 358

Query: 63  EPATEALVNLS-QNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGIS 121
           + A   + N++  N+E    ++   +I   + LL   +    +     + N +       
Sbjct: 359 KEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG---- 414

Query: 122 SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRG 181
                  + I+ L     ++  C     A +   E     L NI K     K        
Sbjct: 415 ---LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNIN 471

Query: 182 LLKQIV 187
                +
Sbjct: 472 ENADFI 477

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 5   LEELLGFL-CSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL-SENKEVS 62
           +  L+ F+  +    ++  A   +  +         +   +  A+P   +LL + + EV 
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD-AVPLFIQLLYTGSVEVK 190

Query: 63  EPATEALVNLSQNS-ELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGIS 121
           E A  AL N++ +S +    ++Q   ++  + L      S+ R     L NL +      
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK---- 246

Query: 122 SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRG 181
                   Q     V + + +  +       +        +  +S       I       
Sbjct: 247 ------KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-EAIQAVIDVR 299

Query: 182 LLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLL 220
           + K++V      + L +      + N     + Q Q ++
Sbjct: 300 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI 338

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 13/166 (7%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL-SENKEVSE 63
           L  L   + S        A   +  L+             +I    L  LL  E+  V  
Sbjct: 259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRI-PKRLVELLSHESTLVQT 317

Query: 64  PATEALVNLSQNSELAGKMV-QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISS 122
           PA  A+ N+   ++L  ++V   G++     LL  P  +I +     +          S+
Sbjct: 318 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI----------SN 367

Query: 123 LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKK 168
           +     EQIQ +    L+    +    A     +     + N S  
Sbjct: 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVS-- 62
           +   +  L S    V++ AV  +  + G     +         LP L +L S+   ++  
Sbjct: 109 VPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYV-LDCNILPPLLQLFSKQNRLTMT 167

Query: 63  EPATEALVNLSQNSELAGKMVQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGIS 121
             A  AL NL +      +  ++   +     LL+  D+ +       L  L+       
Sbjct: 168 RNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSD------ 221

Query: 122 SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKK-EAGRKILLDPKR 180
                 +++IQ +    + R                    + NI    +   +++L+   
Sbjct: 222 ----GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNC-- 275

Query: 181 GLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLL 220
             L+ ++    S     KK    TI N       Q+Q ++
Sbjct: 276 SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI 315

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 6/119 (5%)

Query: 2   ANELEELLGFLCSPSPSVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLL-SENK 59
            + L+ LL  L SP  S+KK A   +  +T G+   +Q++   +    P+L  +L +   
Sbjct: 275 CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN--IFPALISILQTAEF 332

Query: 60  EVSEPATEALVNLSQ--NSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQL 116
              + A  A+ N +   ++E    +V++G IK   DLL   DS I ++ +  L N+ +L
Sbjct: 333 RTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 34/216 (15%), Positives = 72/216 (33%), Gaps = 15/216 (6%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLL-SENKEVS 62
           L  L   L      V   A   +  L+ G  D +Q++          L  LL   + +V 
Sbjct: 194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAG--VCRRLVELLMHNDYKVV 251

Query: 63  EPATEALVNLSQNSELAGKMV-QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGIS 121
            PA  A+ N+    ++  +++     +++ + LL  P  SI +     + N+T  +    
Sbjct: 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN---- 307

Query: 122 SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRG 181
                   QIQ +    +  +       A     +     + N +   +  +I    + G
Sbjct: 308 ------RAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELG 361

Query: 182 LLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQ 217
            +K +       +    +     + N     E + +
Sbjct: 362 CIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAK 397

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 41/264 (15%), Positives = 79/264 (29%), Gaps = 40/264 (15%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKI-ALPSLARLL--SENKEV 61
             +++  + S SP  + +A    R L   E         S    +      L   EN  +
Sbjct: 22  TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTL 81

Query: 62  SEPATEALVNL-SQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ----- 115
              +   L N+ S NS     ++Q G +   ++LL      +    V  L N+       
Sbjct: 82  QFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMC 141

Query: 116 ----LDYGI----SSLLQVEDEQIQGLYVMKLVRSFCRSSSEA----------------- 150
               LD  I      L   ++        +  + + CR  S                   
Sbjct: 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLL 201

Query: 151 -SDDP--FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRN 207
              D          L  +S     +   +    G+ +++V     ++Y         + N
Sbjct: 202 FVSDTDVLADACWALSYLSDGPNDKIQAVI-DAGVCRRLVELLMHNDYKVVSPALRAVGN 260

Query: 208 CCFEAEHQLQNLLLISEFLWPALL 231
                + Q Q  ++++     +LL
Sbjct: 261 IVTGDDIQTQ--VILNCSALQSLL 282

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 32/199 (16%), Positives = 61/199 (30%), Gaps = 21/199 (10%)

Query: 1   MANELEELLGF-------LCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLAR 53
            A +  +L G        L + +  ++  A  ++   + +   +Q        AL  L R
Sbjct: 73  NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG-ALRKLLR 131

Query: 54  LL--SENKEVSEPATEALVNLSQNSE-LAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLL 110
           LL       V   A  A+  L +  E    + +++      M  + +    +      LL
Sbjct: 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLL 191

Query: 111 VNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEA 170
                      +LL    E    L  M +V+              EHV   L ++     
Sbjct: 192 ----------QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241

Query: 171 GRKILLDPKRGLLKQIVRQ 189
                       L++++R 
Sbjct: 242 QGVRECREPELGLEELLRH 260

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 43.5 bits (102), Expect = 5e-05
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 9/170 (5%)

Query: 5   LEELLGFLCS-PSPSVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLL-SENKEV 61
           L +LL  L      +V+  A+  +  L    E GL    +        L R +  + +++
Sbjct: 126 LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLD--GFSVLMRAMQQQVQKL 183

Query: 62  SEPATEALVNLS-QNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI 120
              +   L NL   + E  G +  MGM++  + L+    S     ++  L +L       
Sbjct: 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243

Query: 121 SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEA 170
               +  +  ++ L   +          E   +  E    +L       A
Sbjct: 244 VRECREPELGLEELLRHRCQLL---QQHEEYQEELEFCEKLLQTCFSSPA 290

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 39/213 (18%), Positives = 78/213 (36%), Gaps = 15/213 (7%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLL-SENKEVS 62
           L  L+  L    P V   +   +  LT G  + ++ + K     +P L +LL +    + 
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG--VVPQLVKLLGATELPIV 291

Query: 63  EPATEALVNLSQNSELAGKMV-QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGIS 121
            PA  A+ N+   ++   + V   G +     LL  P ++I +     + N+T       
Sbjct: 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR---- 347

Query: 122 SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRG 181
                  +QIQ +    LV       S+A     +     + N +      +I+     G
Sbjct: 348 ------QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 401

Query: 182 LLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEH 214
           +++ ++    + +    + +   I N    AE 
Sbjct: 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 434

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 46.2 bits (109), Expect = 8e-06
 Identities = 43/257 (16%), Positives = 88/257 (34%), Gaps = 41/257 (15%)

Query: 4   ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL--SENKEV 61
            +E+++  + S +   +  A    R L   E      +      +P     L  ++   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117

Query: 62  SEPATEALVNL-SQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ----- 115
              +  AL N+ S  SE    +V  G I   + LL  P + I+   V  L N+       
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177

Query: 116 ----LDYG----ISSLLQVEDEQIQGLYVMKLV----RSFCRSSSEA------------- 150
               + +G    + +LL V D        ++ +     + CR+ + A             
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237

Query: 151 -----SDDP--FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSG 203
                 +DP         +  ++     R  ++  K+G++ Q+V+   ++          
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV-KKGVVPQLVKLLGATELPIVTPALR 296

Query: 204 TIRNCCFEAEHQLQNLL 220
            I N     + Q Q ++
Sbjct: 297 AIGNIVTGTDEQTQKVI 313

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLLSENK-EVS 62
           L  L+  L SP+  + + A+  +  +  G  + +Q++      ALP+L +LLS    ++ 
Sbjct: 98  LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSSPNEQIL 155

Query: 63  EPATEALVNLSQNS-ELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD 117
           + A  AL N++    E    ++  G +   + LL  P+  I +  +  L N+    
Sbjct: 156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 2   ANELEELLGFLCSPSPSVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLL-SENK 59
            +EL ++   L S     + +A      +     + +Q++      ALP+L +LL S N+
Sbjct: 11  GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAG--ALPALVQLLSSPNE 68

Query: 60  EVSEPATEALVNLSQ-NSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLT 114
           ++ + A  AL N++   +E    ++  G +   + LL  P+  I +  +  L N+ 
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 2   ANELEELLGFLCSPSPSVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLL-SENK 59
           A  L  L+  L SP+  + + A+  +  +  G  + +Q++      ALP+L +LL S N+
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSSPNE 194

Query: 60  EVSEPATEALVNLSQNS-ELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLT 114
           ++ + A  AL N++    E    + + G ++    L    +  I +     L  L 
Sbjct: 195 QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 2   ANELEELLGFLCSPSPSVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLL-SENK 59
           A  L  L+  L SP+  + + A+  +  +  G  + +Q++      ALP+L +LL S N+
Sbjct: 95  AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSSPNE 152

Query: 60  EVSEPATEALVNLSQNSELAGKMV-QMGMIKTAMDLLYKPDSSITRLLVMLLVNLT 114
           ++ + A  AL N++       + V + G ++    L    +  I +     L  L 
Sbjct: 153 QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 15/134 (11%)

Query: 2   ANELEELLGFLCSPSPSVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLL-SENK 59
            +EL +++  L SP     ++A+  +  +  G  + +Q++      ALP+L +LL S N+
Sbjct: 11  GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAG--ALPALVQLLSSPNE 68

Query: 60  EVSEPATEALVNLS-QNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY 118
           ++ + A  AL N++   +E    ++  G +   + LL  P+  I +  +  L N+     
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA---- 124

Query: 119 GISSLLQVEDEQIQ 132
                    +EQIQ
Sbjct: 125 ------SGGNEQIQ 132

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 43.4 bits (101), Expect = 6e-05
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL--SENKEVS 62
           +  L+G L  P   V   A   ++ ++   D    ++  +   +P+L RLL  + + +++
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151

Query: 63  EPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITR 104
           E  T  L NLS +  +  ++V    +    D +  P S   R
Sbjct: 152 EVITGTLWNLSSHDSIKMEIVDHA-LHALTDEVIIPHSGWER 192

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 28/198 (14%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 35  DGLQSLSKYSKIALPSLARLL-SENKEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMD 93
           +      +  +  +      + +  +    PA   L+ LS + E    M ++G ++    
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQ---- 76

Query: 94  LLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDD 153
                  +I  LL +        +   S  L+                            
Sbjct: 77  -------AIAELLQVDCEMYGLTNDHYSITLR---------------------------- 101

Query: 154 PFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAE 213
              + G  L N++  +   K  L   +G ++ +V Q  S +   ++ ++  +RN  + A+
Sbjct: 102 --RYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159

Query: 214 HQLQNLLLISEFLWPALL 231
              +  L     +  AL+
Sbjct: 160 VNSKKTLREVGSV-KALM 176

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 45/330 (13%), Positives = 91/330 (27%), Gaps = 100/330 (30%)

Query: 12  LCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIAL--------PSLARLLSENKEVSE 63
           L + +    K  V  ++        L  L     + +          +            
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV------------ 166

Query: 64  PATEALVNLSQNSELAGKM--VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGIS 121
            A +  ++     ++  K+  + +    +   +L                          
Sbjct: 167 -ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-------------------------- 199

Query: 122 SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDP--K 179
                  E +Q L   ++  ++  S S+ S +    + SI      +   R++L     +
Sbjct: 200 -------EMLQKLL-YQIDPNWT-SRSDHSSNIKLRIHSI------QAELRRLLKSKPYE 244

Query: 180 RGLL-------KQIVRQFD-SSNYL---RKKGVS---GTIRNCCFEAEHQLQNLLLISEF 225
             LL        +    F+ S   L   R K V+             +H    L    E 
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEV 303

Query: 226 LWPALLLPVAGNKVYK--EEDTSKIPLELASALRIEREPVDDPE----IRIQALESI--- 276
              +LLL     +      E  +  P  L+      R+ +   +    +    L +I   
Sbjct: 304 K--SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 277 YLITLQEAGLRA-FW-------SVNGPRLV 298
            L  L+ A  R  F        S + P ++
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 45/340 (13%), Positives = 96/340 (28%), Gaps = 127/340 (37%)

Query: 3   NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVS 62
             L EL      P+ +V      ++ G+ GS  G   +                      
Sbjct: 142 QALLEL-----RPAKNV------LIDGVLGS--GKTWV---------------------- 166

Query: 63  EPATEALVNLSQNSELAGKM--VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQL-DYG 119
             A +  ++     ++  K+  + +    +   +L      + +LL  +  N T   D+ 
Sbjct: 167 --ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM----LQKLLYQIDPNWTSRSDHS 220

Query: 120 ISSLLQVEDEQI------------QGLYVM------KLVRSF---CR------------- 145
            +  L++   Q               L V+      K   +F   C+             
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 146 -SSSEASDDPFEHVGSILVNISKKEAGRKILLD---------PKR---------GLLKQI 186
            S++  +    +H    L   +  E  + +LL          P+           ++ + 
Sbjct: 281 LSAATTTHISLDHHSMTL---TPDEV-KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 187 VRQF-DSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLIS-EFLWPALLLPVAGNKVYKE-- 242
           +R    + +  +                 +L  ++  S   L PA        K++    
Sbjct: 337 IRDGLATWDNWKHVNCD------------KLTTIIESSLNVLEPAEY-----RKMFDRLS 379

Query: 243 ---EDTSKIPLELASALRIEREPVDDPEIRIQALESIYLI 279
                   IP  L S +  +     D  + +  L    L+
Sbjct: 380 VFPPSA-HIPTILLSLIWFDVIK-SDVMVVVNKLHKYSLV 417

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 39.6 bits (92), Expect = 9e-04
 Identities = 29/212 (13%), Positives = 69/212 (32%), Gaps = 45/212 (21%)

Query: 13  CSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSL----ARLLSENKEVSEPATEA 68
             P     +  + ++  L       ++  ++ +   P +      + +  +    PA   
Sbjct: 112 SQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCV 171

Query: 69  LVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVED 128
           L+ LS + E    M ++G ++           +I  LL +        +   S  L+   
Sbjct: 172 LMKLSFDEEHRHAMNELGGLQ-----------AIAELLQVDCEMYGLTNDHYSITLR--- 217

Query: 129 EQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVR 188
                                       + G  L N++  +   K  L   +G ++ +V 
Sbjct: 218 ---------------------------RYAGMALTNLTFGDVANKATLCSMKGCMRALVA 250

Query: 189 QFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLL 220
           Q  S +   ++ ++  +RN  + A+   +  L
Sbjct: 251 QLKSESEDLQQVIASVLRNLSWRADVNSKKTL 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.66
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.58
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.53
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.53
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.53
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.51
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.5
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.49
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.48
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.47
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.47
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.44
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.44
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.43
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.39
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.37
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.37
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.36
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.36
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.34
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.34
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.34
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.32
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.31
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.3
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.28
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.28
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.27
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.27
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.23
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.23
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.18
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.15
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.06
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.89
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.85
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.74
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.72
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.17
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.66
3grl_A	651	General vesicular transport factor P115; vesicle t	97.54
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.34
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.32
3grl_A	651	General vesicular transport factor P115; vesicle t	97.29
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	96.79
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	96.69
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.67
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	96.58
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	96.48
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	96.46
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	96.41
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	96.34
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	96.33
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.2
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	95.74
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.6
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	94.1
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	93.98
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	93.91
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	93.7
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	93.66
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	93.08
1qgr_A	876	Protein (importin beta subunit); transport recepto	92.47
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	92.33
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	92.25
1qgr_A	876	Protein (importin beta subunit); transport recepto	91.56
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	91.39
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	90.87
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	89.76
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	89.3
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	88.89
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	88.46
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	87.61
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	85.56
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	84.66

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.66  E-value=8e-15  Score=129.10  Aligned_cols=239  Identities=20%  Similarity=0.245  Sum_probs=185.9

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCc-cchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSE-DGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA   79 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~-~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~   79 (312)
                      +.++.|+++|+++++++|..|+..|..++... +++..+.+.  ++++.|+.++.+. ..+...|+.+|-|++.+ +..+
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDA--GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence            56899999999999999999999999998664 477776653  6899999999888 88999999999999987 8889


Q ss_pred             HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC-CccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhH
Q 048744           80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ-LDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHV  158 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~-~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~l  158 (312)
                      ..+.+.|+++.++..+.++++.....++..|.||+. .+.....+.+.+       .+..|++++..++.    .-....
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-------~i~~L~~~l~~~~~----~~~~~a  148 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG-------GVEVLVKLLTSTDS----EVQKEA  148 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-------HHHHHHHHTTCSCH----HHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-------CHHHHHHHHcCCCH----HHHHHH
Confidence            999989999999999999988999999999999995 455554444421       37788888765532    234667


Q ss_pred             HHHHHhhcCChhh-hhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744          159 GSILVNISKKEAG-RKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN  237 (312)
Q Consensus       159 a~vl~NlS~~~~g-R~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~  237 (312)
                      +.++.|++...+. ++.+.+.  |.++.|+..+.+++..-|..++.+|.|+|.....+...+..  ...+|.++--    
T Consensus       149 ~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~~~i~~L~~l----  220 (252)
T 4hxt_A          149 ARALANIASGPDEAIKAIVDA--GGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD--AGGVEVLQKL----  220 (252)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH--TTHHHHHHHG----
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--cCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHH----
Confidence            8999999985544 4677764  47888888878888888999999999999966655322222  2344433211    


Q ss_pred             CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhH
Q 048744          238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAG  285 (312)
Q Consensus       238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~g  285 (312)
                                        +.   .  +++++|...+.+|..|+....+
T Consensus       221 ------------------l~---~--~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          221 ------------------LT---S--TDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             ------------------GG---C--SCHHHHHHHHHHHHHHHHTCBC
T ss_pred             ------------------HC---C--CcHHHHHHHHHHHHHHHcCCCc
Confidence                              21   1  2789999999999999876544

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.58  E-value=9.4e-14  Score=136.15  Aligned_cols=284  Identities=15%  Similarity=0.142  Sum_probs=200.5

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCcc-chhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSED-GLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA   79 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~-~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~   79 (312)
                      ..++.||.+|+++++++|..|+..|..++...+ .+..+.+.  +.|+.|+.+++.+ +.+...|+.+|-||+.+ +..+
T Consensus         2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~--g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k   79 (457)
T 1xm9_A            2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL--GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHT--THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            358999999999999999999999999986654 45566654  6899999999887 78899999999999976 8999


Q ss_pred             HHhhhhhHHHHHHHHHc-CCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhc-------CCC-CC
Q 048744           80 GKMVQMGMIKTAMDLLY-KPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCR-------SSS-EA  150 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~-~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~-------~~~-~~  150 (312)
                      ..+++.|.|+.++..+. +++......++..|.||+..+++...+.+ +       .++.|++++..       +.. +.
T Consensus        80 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g-------~i~~Lv~ll~~~~s~~~~~~~~~~  151 (457)
T 1xm9_A           80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-D-------ALPVLADRVIIPFSGWCDGNSNMS  151 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-H-------HHHHHHHHTTHHHHTCC-------
T ss_pred             HHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-c-------cHHHHHHHHhccccccccCccchh
Confidence            99999999999999999 77788889999999999999877666665 3       37888888842       111 10


Q ss_pred             ----CCCchhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccC------CchhhHhhHHHHHHhhhccchhh-----
Q 048744          151 ----SDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDS------SNYLRKKGVSGTIRNCCFEAEHQ-----  215 (312)
Q Consensus       151 ----~~~~~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~------~s~iRR~gva~~ikNccF~~~~H-----  215 (312)
                          ...-+...+.+|.|++..++.|+.+.+. .|.+..|+..+.+      .+..-.+.++.+++|+|+-.+..     
T Consensus       152 ~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~  230 (457)
T 1xm9_A          152 REVVDPEVFFNATGCLRNLSSADAGRQTMRNY-SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY  230 (457)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTSHHHHHHHTTS-TTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHH
T ss_pred             cccccHHHHHHHHHHHHHHccCHHHHHHHHHc-CCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchh
Confidence                0111336789999999999999999875 1356666654432      23334556677889987521100     


Q ss_pred             --------------------------------------------h-HHH------------hhhcc--Chh---hhhhhc
Q 048744          216 --------------------------------------------L-QNL------------LLISE--FLW---PALLLP  233 (312)
Q Consensus       216 --------------------------------------------~-~~l------------l~~~~--~~l---p~lLlP  233 (312)
                                                                  . +.+            |....  .+.   -..|.-
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~n  310 (457)
T 1xm9_A          231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN  310 (457)
T ss_dssp             HHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence                                                        0 000            11000  000   133444


Q ss_pred             ccC-CCCCChh-------hhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHHHHHhCCcchhcccccc
Q 048744          234 VAG-NKVYKEE-------DTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHGSGT  303 (312)
Q Consensus       234 laG-~ee~~~e-------e~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~~lr~~~vy~vlr~~~~  303 (312)
                      ++. ...+..+       +...+|.-+++ +..     .+.++++..+-+|-.|+.....++.+.+.++.++++-...
T Consensus       311 l~~~~~~~~~~~~~~~v~~~~~l~~Lv~L-L~~-----~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~  382 (457)
T 1xm9_A          311 LTASKGLMSSGMSQLIGLKEKGLPQIARL-LQS-----GNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTS  382 (457)
T ss_dssp             HTTCSSSHHHHHHHHHHTTSCCHHHHHHH-TTC-----SCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTS
T ss_pred             hccCcCcchHHHHHHHHHHcCCchHHHHH-HhC-----CCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccC
Confidence            553 3333211       22446666663 422     2688999999999999999999999998888777665544

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.53  E-value=1.7e-13  Score=118.51  Aligned_cols=190  Identities=18%  Similarity=0.259  Sum_probs=157.3

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcC-CCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHHH
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAGK   81 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls-~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~~   81 (312)
                      .+-|+.+|+++++++|..|+..|..++ ++++++..+.+.  ++++.|+.++.+. +.+...|+.+|-|++ .++..+..
T Consensus        14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (210)
T 4db6_A           14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (210)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            567999999999999999999999999 557777777654  6899999999888 889999999999999 56788888


Q ss_pred             hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccch-HHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH
Q 048744           82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI-SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS  160 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~-~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~  160 (312)
                      +++.|.++.++..+.++++.....++..|+||+...... ..+++.      | .+..|++++..++.    .-..+.+.
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~-~i~~L~~ll~~~~~----~v~~~a~~  160 (210)
T 4db6_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA------G-ALPALVQLLSSPNE----QILQEALW  160 (210)
T ss_dssp             HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------T-HHHHHHHHTTCSCH----HHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHc------C-cHHHHHHHHcCCCH----HHHHHHHH
Confidence            888899999999999999899999999999999765433 333332      1 47788888876522    23566789


Q ss_pred             HHHhhcCC-hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhh
Q 048744          161 ILVNISKK-EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCC  209 (312)
Q Consensus       161 vl~NlS~~-~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNcc  209 (312)
                      +|.|++.. ++.+..+.+.+  .++.|+..+.+++..-|+.++.+|+|+|
T Consensus       161 aL~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          161 ALSNIASGGNEQKQAVKEAG--ALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHHHHTSCHHHHHHHHHTT--HHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCcHHHHHHHHCC--CHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            99999988 88888887764  7788888777788888899999999987

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.53  E-value=2.1e-14  Score=129.97  Aligned_cols=197  Identities=18%  Similarity=0.210  Sum_probs=155.5

Q ss_pred             hHHHHHhccCCCCH--HHHHHHHHHHHhcC-CCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhH
Q 048744            4 ELEELLGFLCSPSP--SVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSEL   78 (312)
Q Consensus         4 ~l~ELv~FL~~~~~--~vR~~Al~~llgls-~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~   78 (312)
                      .++.||++|+++++  +++..|+..|..++ ++++++..|...  +.|+.|+.+++.+ ..+...|+.+|-|||. +++.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~--G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQL--RGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT--THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            58999999998887  99999999999888 457788888764  6899999999887 8899999999999997 5888


Q ss_pred             HHHhhhhhHHHHHHHHHc-CCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHh---cCCC---CCC
Q 048744           79 AGKMVQMGMIKTAMDLLY-KPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFC---RSSS---EAS  151 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~-~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~---~~~~---~~~  151 (312)
                      +..+++.|.|+.++..+. .++......++..|-||+..+.+...+.+.        .++.|++.+.   .|..   ..|
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~--------~i~~Lv~ll~~p~sG~~~~~~~~  158 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE--------ALLTLTENIIIPFSGWPEGDYPK  158 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH--------HHHHHCCCCCHHHHCCCGGGCCC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc--------cHHHHHHHHhccccCCccccccc
Confidence            999999999999999998 467778889999999999999887665441        2667776543   2321   011


Q ss_pred             ------CCchhhHHHHHHhhcC-Chhhhhhhcccccchhhhhhhccc------CCchhhHhhHHHHHHhhhcc
Q 048744          152 ------DDPFEHVGSILVNISK-KEAGRKILLDPKRGLLKQIVRQFD------SSNYLRKKGVSGTIRNCCFE  211 (312)
Q Consensus       152 ------~~~~~~la~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~------~~s~iRR~gva~~ikNccF~  211 (312)
                            ..-+...+.+|.|+|. -+++|+.|.+.+ |++..|+..+.      ..+..-++.++.+++|+||-
T Consensus       159 ~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~-Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCD-GLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTST-THHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCC-CcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence                  1235678899999998 569999998753 56666665432      13455689999999999984

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.53  E-value=1.5e-13  Score=121.88  Aligned_cols=234  Identities=19%  Similarity=0.204  Sum_probs=179.6

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHh-cCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRG-LTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAG   80 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llg-ls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~   80 (312)
                      .+++++..|+++++++|..|+..|.. ++.+.+++..+.+.  ++++.|+.++.+. ..+...|+.+|-|++. ++..+.
T Consensus        13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHc--CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            57899999999999999999999965 44456677766654  6899999999887 8899999999999997 688899


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccch-HHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI-SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG  159 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~-~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la  159 (312)
                      .+++.|+++.++..+.++++.....++..|.||+..+... ..+.+.+       .++.|++++..++.    .-....+
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-------~i~~L~~lL~~~~~----~v~~~a~  159 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG-------ALPALVQLLSSPNE----QILQEAL  159 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-------HHHHHHHGGGCSCH----HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCC-------CHHHHHHHHhCCCH----HHHHHHH
Confidence            9999999999999999998899999999999999998766 4444422       37788888855421    1245678


Q ss_pred             HHHHhhcCC-hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCC
Q 048744          160 SILVNISKK-EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNK  238 (312)
Q Consensus       160 ~vl~NlS~~-~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~e  238 (312)
                      .+|.|++.. ++.+..+.+.  |.+..|+..+.++++.-|..++.+|.|+|...+.+...+.  +.+.+|.|+--+.   
T Consensus       160 ~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~L~~ll~---  232 (252)
T 4db8_A          160 WALSNIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK--EAGALEKLEQLQS---  232 (252)
T ss_dssp             HHHHHHTTSCHHHHHHHHHT--TCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHH--HTTHHHHHHTTTT---
T ss_pred             HHHHHHHcCChHHHHHHHHC--CCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH--HCCcHHHHHHHhC---
Confidence            999999984 5666677665  4788888877777888899999999999976655532222  2234444422111   


Q ss_pred             CCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc
Q 048744          239 VYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL  281 (312)
Q Consensus       239 e~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~  281 (312)
                                            .  .++++|...+.+|..||+
T Consensus       233 ----------------------~--~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          233 ----------------------H--ENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             ----------------------C--SSSHHHHTHHHHHHTTC-
T ss_pred             ----------------------C--CCHHHHHHHHHHHHHHhc
Confidence                                  1  267899999999888764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.51  E-value=5.3e-13  Score=127.53  Aligned_cols=242  Identities=18%  Similarity=0.175  Sum_probs=179.6

Q ss_pred             hHHHHHhccC-----------CCCHHHHHHHHHHHHhcCCCcc-chhhhhhcccchHHHHHHhhccC-ccchhhHHHHHH
Q 048744            4 ELEELLGFLC-----------SPSPSVKKAAVDIVRGLTGSED-GLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALV   70 (312)
Q Consensus         4 ~l~ELv~FL~-----------~~~~~vR~~Al~~llgls~~~~-~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~Li   70 (312)
                      .++-|+.+|.           +.++++|..|+..|..++...+ ++..|.... ++|+.|+.+++.+ ..+..+|+.+|-
T Consensus        74 ~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~-GaIp~LV~LL~s~~~~v~~~A~~aL~  152 (354)
T 3nmw_A           74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK-GCMRALVAQLKSESEDLQQVIASVLR  152 (354)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH-HHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC-CcHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            3667888883           2468999999999999997654 666664443 6899999999877 889999999999


Q ss_pred             hcCC--ChhHHHHhhhhhHHHHHHHHH-cCCCChhHHHHHHHHHhhcC-CccchHHHhhhhhhhhhhhhHHHHHHHHhcC
Q 048744           71 NLSQ--NSELAGKMVQMGMIKTAMDLL-YKPDSSITRLLVMLLVNLTQ-LDYGISSLLQVEDEQIQGLYVMKLVRSFCRS  146 (312)
Q Consensus        71 NLS~--d~~~~~~l~~~~~i~~lv~~i-~~~~~~~ad~a~mLLsNLT~-~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~  146 (312)
                      |||.  ++..+..+++.|.|+.|+..+ ..++......++..|.||+. .+.+...+...     .| .++.|++++..+
T Consensus       153 nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~-----~G-ai~~Lv~lL~~~  226 (354)
T 3nmw_A          153 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV-----DG-ALAFLVGTLTYR  226 (354)
T ss_dssp             HHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHS-----TT-HHHHHHHHTTCC
T ss_pred             HHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHh-----cC-cHHHHHHHhccC
Confidence            9996  467888999889999999975 45566777889999999998 55655554421     12 488999998765


Q ss_pred             CCCCCCCchhhHHHHHHhhcC----ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhh
Q 048744          147 SSEASDDPFEHVGSILVNISK----KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLI  222 (312)
Q Consensus       147 ~~~~~~~~~~~la~vl~NlS~----~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~  222 (312)
                      .......-....+.+|.|+|.    .+++|+.+.+.+  .+..|+..+.+++..-++.++++|.|+|...+.....+.. 
T Consensus       227 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-  303 (354)
T 3nmw_A          227 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN--CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD-  303 (354)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHH-
T ss_pred             CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC--CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHH-
Confidence            432111124567899999995    899999998864  6888888778888888999999999999754444223322 


Q ss_pred             ccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCH
Q 048744          223 SEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQE  283 (312)
Q Consensus       223 ~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~  283 (312)
                       ...+|.|.--                      +.   .  .++.+|...+.+|..|++.+
T Consensus       304 -~G~i~~Lv~L----------------------L~---s--~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          304 -MGAVSMLKNL----------------------IH---S--KHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             -TTHHHHHHTT----------------------TT---C--SSHHHHHHHHHHHHHHHTTC
T ss_pred             -CCCHHHHHHH----------------------Hh---C--CCHHHHHHHHHHHHHHHcCC
Confidence             3444444211                      11   1  27889999999999998763

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.50  E-value=3.5e-13  Score=136.83  Aligned_cols=249  Identities=15%  Similarity=0.091  Sum_probs=191.5

Q ss_pred             hHHHHHhccCC-CCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHH
Q 048744            4 ELEELLGFLCS-PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAG   80 (312)
Q Consensus         4 ~l~ELv~FL~~-~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~   80 (312)
                      .++.|+.+|.+ .++++|..|+..|..++...+++..+.+.  +.++.|+.++++. ..+...|+.+|.|++.+ +....
T Consensus        57 ~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~  134 (644)
T 2z6h_A           57 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM  134 (644)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTT--THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHc--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence            47889999985 59999999999999999998898888764  6899999999888 88999999999999865 46667


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC-CccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ-LDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG  159 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~-~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la  159 (312)
                      .+.+.|+|+.++..+.++++.....++..|.||+. .+++...+.+.+       .+..|++++..+..   .......+
T Consensus       135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g-------~v~~Lv~lL~~~~~---~~~~~~a~  204 (644)
T 2z6h_A          135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-------GPQALVNIMRTYTY---EKLLWTTS  204 (644)
T ss_dssp             HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-------HHHHHHHHHTTCCC---HHHHHHHH
T ss_pred             HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcC-------ChHHHHHHHHcCCh---HHHHHHHH
Confidence            77788999999999999877766677889999996 555555554432       37788888866532   12245578


Q ss_pred             HHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCC
Q 048744          160 SILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKV  239 (312)
Q Consensus       160 ~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee  239 (312)
                      .+|.|++..+++|..+++.+  .+..++..+.+.+..-|+.++.+++|+|.+.....  .   ...+             
T Consensus       205 ~~L~nLs~~~~~~~~l~~~g--~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~--~---~~~~-------------  264 (644)
T 2z6h_A          205 RVLKVLSVCSSNKPAIVEAG--GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--G---MEGL-------------  264 (644)
T ss_dssp             HHHHHHTTCTTHHHHHHHTT--HHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCC--S---CHHH-------------
T ss_pred             HHHHHHhcCcccHHHHHHCC--CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhh--h---hhhH-------------
Confidence            99999999999999999864  78888888777777788899999999997542210  0   0012             


Q ss_pred             CChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcC-HhHHHHHHhCCcchhc
Q 048744          240 YKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQ-EAGLRAFWSVNGPRLV  298 (312)
Q Consensus       240 ~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t-~~gR~~lr~~~vy~vl  298 (312)
                              +|.-+++ +.   .  +|+++|...+.+|..||.. ...|+.+.+.|+.+.|
T Consensus       265 --------i~~Lv~l-L~---~--~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~L  310 (644)
T 2z6h_A          265 --------LGTLVQL-LG---S--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL  310 (644)
T ss_dssp             --------HHHHHHH-TT---C--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             --------HHHHHHH-Hc---C--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHH
Confidence                    2222332 22   1  2789999999999999875 4678888887766643

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.49  E-value=6.3e-13  Score=116.88  Aligned_cols=197  Identities=20%  Similarity=0.275  Sum_probs=163.2

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAG   80 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~   80 (312)
                      -++.|+++|+++++++|..|+..|..++.. ++++..+.+.  +.++.|+.++.++ ..+...|+.+|-||+ .++..+.
T Consensus        45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  122 (252)
T 4hxt_A           45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA--GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK  122 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            478899999999999999999999999988 7777777654  6899999999888 889999999999999 6788899


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccch-HHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI-SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG  159 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~-~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la  159 (312)
                      .+.+.|+++.++..+.++++.....++..|.||+...... ..+.+.      | .+..|++++..++.    .-..+.+
T Consensus       123 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~-~i~~L~~ll~~~~~----~v~~~a~  191 (252)
T 4hxt_A          123 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA------G-GVEVLVKLLTSTDS----EVQKEAA  191 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------T-HHHHHHHHTTCSCH----HHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC------c-CHHHHHHHHCCCCH----HHHHHHH
Confidence            9999999999999999999899999999999999866544 333332      1 37788888875432    2346678


Q ss_pred             HHHHhhcC-ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhh
Q 048744          160 SILVNISK-KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ  215 (312)
Q Consensus       160 ~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H  215 (312)
                      .++.|++. .++.++.+.+.  |.++.++..+.++++.-|+.++.+|.|++.....+
T Consensus       192 ~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  246 (252)
T 4hxt_A          192 RALANIASGPTSAIKAIVDA--GGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE  246 (252)
T ss_dssp             HHHHHHTTSBHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred             HHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence            99999997 77778888875  47888888777788888999999999999865544

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.48  E-value=6.8e-13  Score=117.67  Aligned_cols=192  Identities=18%  Similarity=0.261  Sum_probs=157.4

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCC-CccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHH-H
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTG-SEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELA-G   80 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~-~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~-~   80 (312)
                      .++.|+++|+++++++|..|+..|..++. +++++..+.+.  +.++.|+.++.++ ..+...|+.+|-||+.++... .
T Consensus        55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  132 (252)
T 4db8_A           55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ  132 (252)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence            46789999999999999999999999997 57788777664  6899999999888 889999999999999998877 8


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccch-HHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI-SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG  159 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~-~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la  159 (312)
                      .+.+.|+++.++..+.++++.....++..|.||+...... ..+.+.      | .+..|++++..++.    .-....+
T Consensus       133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~-~i~~L~~ll~~~~~----~v~~~a~  201 (252)
T 4db8_A          133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA------G-ALPALVQLLSSPNE----QILQEAL  201 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------T-CHHHHHHGGGCSSH----HHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC------C-CHHHHHHHHCCCCH----HHHHHHH
Confidence            8888899999999999998889999999999999866433 333332      1 47888888865521    1246678


Q ss_pred             HHHHhhc-CChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhc
Q 048744          160 SILVNIS-KKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCF  210 (312)
Q Consensus       160 ~vl~NlS-~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF  210 (312)
                      .+|.|++ ..++.+..+++.  |.+..++..+.++++.-|+.++.+|.|+|-
T Consensus       202 ~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          202 WALSNIASGGNEQKQAVKEA--GALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHTTSCHHHHHHHHHT--THHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHhcCCHHHHHHHHHC--CcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            9999998 467778888765  478888887777788888999999999983

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.47  E-value=5.8e-13  Score=127.25  Aligned_cols=197  Identities=16%  Similarity=0.155  Sum_probs=159.9

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCC--ccchhhhhhcccchHHHHHHhh-ccC-ccchhhHHHHHHhcCC-ChhH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS--EDGLQSLSKYSKIALPSLARLL-SEN-KEVSEPATEALVNLSQ-NSEL   78 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~--~~~~~~i~~~~~~~i~~L~~L~-~d~-~~~~~~Al~~LiNLS~-d~~~   78 (312)
                      .++.||++|+++++++|..|+..|..++..  +++|..|...  +.|+.|+.++ +.+ ..+.+.|+.+|-|||. ++..
T Consensus       128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~--G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n  205 (354)
T 3nmw_A          128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV--GSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  205 (354)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT--THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHC--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence            388999999999999999999999999874  5677777653  6899999974 444 6788999999999998 6777


Q ss_pred             HHHhh-hhhHHHHHHHHHcCCCC----hhHHHHHHHHHhhcC----CccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCC
Q 048744           79 AGKMV-QMGMIKTAMDLLYKPDS----SITRLLVMLLVNLTQ----LDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSE  149 (312)
Q Consensus        79 ~~~l~-~~~~i~~lv~~i~~~~~----~~ad~a~mLLsNLT~----~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~  149 (312)
                      +..++ ..|+|+.|+..+.++..    .....++..|.||+.    .+++...+.+.+       .++.|++.+..++..
T Consensus       206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g-------~i~~Lv~lL~~~~~~  278 (354)
T 3nmw_A          206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN-------CLQTLLQHLKSHSLT  278 (354)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT-------HHHHHHHHTTCSCHH
T ss_pred             hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC-------CHHHHHHHHcCCChH
Confidence            88888 56999999999987654    377889999999995    677666655532       378999998766432


Q ss_pred             CCCCchhhHHHHHHhhc-CChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhh
Q 048744          150 ASDDPFEHVGSILVNIS-KKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ  215 (312)
Q Consensus       150 ~~~~~~~~la~vl~NlS-~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H  215 (312)
                          -....+.++.|++ ..++.|+.+++.  |.+..|+..+.+++..-|+.++.+|+|++.+....
T Consensus       279 ----v~~~A~~aL~nLa~~~~~~~~~i~~~--G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          279 ----IVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             ----HHHHHHHHHHHHTSSCHHHHHHHHHT--THHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             ----HHHHHHHHHHHHhCCCHHHHHHHHHC--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence                2455789999999 589999999876  47788887777777777999999999999876554

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.47  E-value=6.3e-13  Score=129.74  Aligned_cols=248  Identities=15%  Similarity=0.088  Sum_probs=190.1

Q ss_pred             hHHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHH
Q 048744            4 ELEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAG   80 (312)
Q Consensus         4 ~l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~   80 (312)
                      .++.|+++|+ ++++++|..|+..|..++..++++..+.+.  +.++.|+.+++++ +.+...|+.+|.|++.+ +....
T Consensus        60 ~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  137 (529)
T 1jdh_A           60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM  137 (529)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHH
Confidence            5788999997 459999999999999999998898888764  6899999999887 78999999999999976 56677


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCC-ccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQL-DYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG  159 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~-~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la  159 (312)
                      .+.+.|+++.+++.+.+++......++..|.|++.. +++...+.+.+       .+..|++++..+...   ......+
T Consensus       138 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~-------~i~~L~~ll~~~~~~---~~~~~a~  207 (529)
T 1jdh_A          138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-------GPQALVNIMRTYTYE---KLLWTTS  207 (529)
T ss_dssp             HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-------HHHHHHHHHHHCCCH---HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC-------CHHHHHHHHHhCChH---HHHHHHH
Confidence            777889999999999998877777888899999985 34444444421       367888877665321   2234567


Q ss_pred             HHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCC
Q 048744          160 SILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKV  239 (312)
Q Consensus       160 ~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee  239 (312)
                      .++.|++..+++|..+++.+  .+..++..+.+.+..-|+.++.++.|+|.+.....     ...               
T Consensus       208 ~~L~~l~~~~~~~~~~~~~g--~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~---------------  265 (529)
T 1jdh_A          208 RVLKVLSVCSSNKPAIVEAG--GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE-----GME---------------  265 (529)
T ss_dssp             HHHHHHTTSTTHHHHHHHTT--HHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS-----CCH---------------
T ss_pred             HHHHHHhcCcccHHHHHHCC--CHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH-----HHH---------------
Confidence            89999999999999999864  78888887776677677889999999997542210     000               


Q ss_pred             CChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcC-HhHHHHHHhCCcchh
Q 048744          240 YKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQ-EAGLRAFWSVNGPRL  297 (312)
Q Consensus       240 ~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t-~~gR~~lr~~~vy~v  297 (312)
                            ..+|.-+++ +.   .  +|+++|...+.+|..||.. ...++.+.+.|+.+.
T Consensus       266 ------~~i~~L~~l-l~---~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~  312 (529)
T 1jdh_A          266 ------GLLGTLVQL-LG---S--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA  312 (529)
T ss_dssp             ------HHHHHHHHH-TT---C--SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHH
T ss_pred             ------hHHHHHHHH-Hc---C--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Confidence                  123333332 31   1  3899999999999999885 468888888877653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.44  E-value=3.8e-12  Score=133.17  Aligned_cols=258  Identities=14%  Similarity=0.137  Sum_probs=193.4

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC--ChhHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ--NSELAG   80 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~--d~~~~~   80 (312)
                      .++-|+++|+++++++|..|+..|..+++++++|..+.+.  ++++.|+.++..+ ....+.|..+|-||+.  ++...-
T Consensus       496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~--Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~  573 (810)
T 3now_A          496 ITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQE--GGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF  573 (810)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHT--THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence            4788999999999999999999999999998999888775  7899999999887 7789999999999974  443221


Q ss_pred             Hh-hhhhHHHHHHHHHcCCCChh-HHHHHHHHHhhcCCc-cchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744           81 KM-VQMGMIKTAMDLLYKPDSSI-TRLLVMLLVNLTQLD-YGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH  157 (312)
Q Consensus        81 ~l-~~~~~i~~lv~~i~~~~~~~-ad~a~mLLsNLT~~~-~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~  157 (312)
                      .. ...++|+.|+..+..+.... .-.+++.|+||+... +.+.++++.+       ++++|++++..+..    .-+..
T Consensus       574 ~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG-------~l~~Lv~LL~s~~~----~Vq~~  642 (810)
T 3now_A          574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ-------GVSKIEYYLMEDHL----YLTRA  642 (810)
T ss_dssp             TTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-------HHHHHHHHHHSCCT----THHHH
T ss_pred             cchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-------CHHHHHHHHcCCCH----HHHHH
Confidence            00 01368999999887543433 236999999999985 4455555532       47899998876532    23556


Q ss_pred             HHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744          158 VGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN  237 (312)
Q Consensus       158 la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~  237 (312)
                      .+..++|++..++.+..|.. +.+.++.|+..+.+++..=|+-++++|.|++-..+.....++.. .+.+|.|.      
T Consensus       643 A~~~L~NLa~~~~~~~~~v~-~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~-~g~I~~Lv------  714 (810)
T 3now_A          643 AAQCLCNLVMSEDVIKMFEG-NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI-ASWLDILH------  714 (810)
T ss_dssp             HHHHHHHHTTSHHHHHHHHS-SSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS-TTHHHHHH------
T ss_pred             HHHHHHHHhCChHHHHHHHh-ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH-cCCHHHHH------
Confidence            78999999999999999984 34678888887777777677778899999998433333244442 34444442      


Q ss_pred             CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhcccccc
Q 048744          238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVHGSGT  303 (312)
Q Consensus       238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr~~~~  303 (312)
                                     ++ +.   .  .|..+|...+.+|..|++ +.+-++++.+.|+.+.|.+...
T Consensus       715 ---------------~L-L~---s--~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~  760 (810)
T 3now_A          715 ---------------TL-IA---N--PSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQ  760 (810)
T ss_dssp             ---------------HH-HT---C--SSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCC
T ss_pred             ---------------HH-HC---C--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHh
Confidence                           21 22   1  389999999999999975 5677889999999998877653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.44  E-value=5.8e-12  Score=124.84  Aligned_cols=255  Identities=18%  Similarity=0.207  Sum_probs=188.3

Q ss_pred             hHHHHHhccC-CCCHHHHHHHHHHHHhc-CCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744            4 ELEELLGFLC-SPSPSVKKAAVDIVRGL-TGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA   79 (312)
Q Consensus         4 ~l~ELv~FL~-~~~~~vR~~Al~~llgl-s~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~   79 (312)
                      -++-||+||+ +.++++|..|+..|..+ +++++++..+...  ++|+.|+.++.++ ..+...|+.+|-|++.| +..+
T Consensus       101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~--GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r  178 (510)
T 3ul1_B          101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  178 (510)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            3788999998 56899999999999988 5678888877764  7899999999888 88999999999999976 6778


Q ss_pred             HHhhhhhHHHHHHHHHcCCCCh-----hHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCc
Q 048744           80 GKMVQMGMIKTAMDLLYKPDSS-----ITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDP  154 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~~~~~-----~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~  154 (312)
                      ..+.+.|++..++..+.+++..     ....++..|+|+++.......+...     .+ .++.|+.++..+..    .-
T Consensus       179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~-----~~-~lp~L~~LL~~~~~----~v  248 (510)
T 3ul1_B          179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV-----EQ-ILPTLVRLLHHNDP----EV  248 (510)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHH-----HH-HHHHHHHHTTCSCH----HH
T ss_pred             HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHH-----Hh-HHHHHHHHHhcCCH----HH
Confidence            8888889999999999876532     4557889999999987544432221     11 35667766654422    12


Q ss_pred             hhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcc
Q 048744          155 FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPV  234 (312)
Q Consensus       155 ~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPl  234 (312)
                      ....+..|+|++..+..+..++.. .|.+..|+..+.+.+..-+..++.+|.|+|...+.....++.  ...+|.+.-- 
T Consensus       249 ~~~A~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~--~g~l~~L~~L-  324 (510)
T 3ul1_B          249 LADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID--AGALAVFPSL-  324 (510)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTGGGGCC-C-
T ss_pred             HHHHHHHHHHHhhchhhhHHHHHh-cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh--ccchHHHHHH-
Confidence            456789999999987776554432 257788888777788878889999999999876665323332  2334433211 


Q ss_pred             cCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhccc
Q 048744          235 AGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVHG  300 (312)
Q Consensus       235 aG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr~  300 (312)
                                           +.   .  +++.||...+-+|-.||+ +...++.+.+.|+.+.|-.
T Consensus       325 ---------------------L~---~--~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~  365 (510)
T 3ul1_B          325 ---------------------LT---N--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG  365 (510)
T ss_dssp             ---------------------TT---C--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred             ---------------------hc---C--CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHH
Confidence                                 11   1  278899999999999986 6777888888888876544

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.43  E-value=2.3e-12  Score=130.48  Aligned_cols=274  Identities=17%  Similarity=0.172  Sum_probs=186.8

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCC-CccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC--ChhHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTG-SEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ--NSELA   79 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~-~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~--d~~~~   79 (312)
                      .++.||++|.+++++++..|+..|..++. +.+++..|...  +.|+.|+.++..+ ..+...|+.+|-|||.  ++..+
T Consensus        49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~--G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk  126 (584)
T 3l6x_A           49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKL--KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK  126 (584)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred             cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc--CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence            58999999999999999999999999985 68888888764  6899999999888 8899999999999997  48899


Q ss_pred             HHhhhhhHHHHHHHHHcCC-CChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhc---CCCC-----C
Q 048744           80 GKMVQMGMIKTAMDLLYKP-DSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCR---SSSE-----A  150 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~~-~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~---~~~~-----~  150 (312)
                      ..+++.|.|+.|+..+.+. .......++..|.||+.++++...+..   +     .++.|++++..   |...     .
T Consensus       127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~---~-----alp~Lv~LL~~p~sg~~~~~~~~~  198 (584)
T 3l6x_A          127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD---H-----ALHALTDEVIIPHSGWEREPNEDC  198 (584)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH---H-----THHHHHHHTHHHHHCCC-------
T ss_pred             HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh---c-----cHHHHHHHHhcccccccccccccc
Confidence            9999999999999999874 455678899999999999987776653   1     26777776531   2110     0


Q ss_pred             C------CCchhhHHHHHHhhcCCh-hhhhhhcccccchhhhhhhccc------CCchhhHhhHHHHHHhhhccchhhhH
Q 048744          151 S------DDPFEHVGSILVNISKKE-AGRKILLDPKRGLLKQIVRQFD------SSNYLRKKGVSGTIRNCCFEAEHQLQ  217 (312)
Q Consensus       151 ~------~~~~~~la~vl~NlS~~~-~gR~~~l~~~~~~l~~ll~~~~------~~s~iRR~gva~~ikNccF~~~~H~~  217 (312)
                      |      ..-+...+.+|.|||... ++|+.+.+.+ |++..|+..+.      ..+..-.+.++.+|+|+||......+
T Consensus       199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~-Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~  277 (584)
T 3l6x_A          199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECD-GLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIP  277 (584)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHST-THHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHST
T ss_pred             cccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-CcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccccc
Confidence            1      112456789999999875 6799998753 56666666443      14455678899999999996322100


Q ss_pred             ---HHhhhccChhhhhhhcccCCCCCChhhhcc------CcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCH-----
Q 048744          218 ---NLLLISEFLWPALLLPVAGNKVYKEEDTSK------IPLELASALRIEREPVDDPEIRIQALESIYLITLQE-----  283 (312)
Q Consensus       218 ---~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~------lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~-----  283 (312)
                         .+...    .+.   --.|+...+.+-.+.      ++.-+.+ +.. .   ..+.++...+-||..||+.+     
T Consensus       278 ~~~~~~~~----~~~---~~~~~~~~~~~Gve~L~~~~~v~~Ll~L-L~~-s---~~~~v~E~Aa~AL~nL~ag~~~~~~  345 (584)
T 3l6x_A          278 QAERYQEA----APN---VANNTGTSPARGYELLFQPEVVRIYISL-LKE-S---KTPAILEASAGAIQNLCAGRWTYGR  345 (584)
T ss_dssp             TCCC---------------------CCCCGGGGGGSHHHHHHHHHH-HHH-C---CCHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred             chhhhhhh----ccc---ccccccccCchhHHHHhcccHHHHHHHH-Hcc-C---CCHHHHHHHHHHHHHHHcCCccccH
Confidence               01000    000   001221111111111      1111211 211 1   25899999999999999754     


Q ss_pred             hHHHHHHhCCcchhccc
Q 048744          284 AGLRAFWSVNGPRLVHG  300 (312)
Q Consensus       284 ~gR~~lr~~~vy~vlr~  300 (312)
                      .-|..+|+.++.++|-+
T Consensus       346 ~~~~~v~~~~glp~Lv~  362 (584)
T 3l6x_A          346 YIRSALRQEKALSAIAD  362 (584)
T ss_dssp             HHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHH
Confidence            23557777777765544

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.39  E-value=9.7e-12  Score=122.68  Aligned_cols=242  Identities=18%  Similarity=0.187  Sum_probs=178.3

Q ss_pred             hHHHHHhccC-----------CCCHHHHHHHHHHHHhcCCCcc-chhhhhhcccchHHHHHHhhccC-ccchhhHHHHHH
Q 048744            4 ELEELLGFLC-----------SPSPSVKKAAVDIVRGLTGSED-GLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALV   70 (312)
Q Consensus         4 ~l~ELv~FL~-----------~~~~~vR~~Al~~llgls~~~~-~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~Li   70 (312)
                      .++-|+.+|.           +.++.++..|+..|..++...+ ++..+.... ++|+.|+.++..+ ..+..+|+.+|-
T Consensus       190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~-GaIp~LV~LL~s~~~~v~~~A~~aL~  268 (458)
T 3nmz_A          190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK-GCMRALVAQLKSESEDLQQVIASVLR  268 (458)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCH-HHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcC-CcHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3667888883           2468899999999999997654 665564433 6899999999877 889999999999


Q ss_pred             hcCC--ChhHHHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcC-CccchHHHhhhhhhhhhhhhHHHHHHHHhcC
Q 048744           71 NLSQ--NSELAGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQ-LDYGISSLLQVEDEQIQGLYVMKLVRSFCRS  146 (312)
Q Consensus        71 NLS~--d~~~~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~-~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~  146 (312)
                      |||.  ++..+..+++.|.|+.|+..+.. ++......++..|.||+. .+.+..++...     .| .++.|++++..+
T Consensus       269 nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~-----~G-al~~Lv~LL~~~  342 (458)
T 3nmz_A          269 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV-----DG-ALAFLVGTLTYR  342 (458)
T ss_dssp             HHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHS-----TT-HHHHHHHHTTCC
T ss_pred             HHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHh-----cC-cHHHHHHHhcCC
Confidence            9997  46788889988999999998654 555677788999999998 66665555421     12 488899998766


Q ss_pred             CCCCCCCchhhHHHHHHhhcC----ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhh
Q 048744          147 SSEASDDPFEHVGSILVNISK----KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLI  222 (312)
Q Consensus       147 ~~~~~~~~~~~la~vl~NlS~----~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~  222 (312)
                      .....-.-....+.+|.|||.    .+++|+.+.+.+  .+..|+..+.+++..-++.++++|.|+|.....+...+.. 
T Consensus       343 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G--~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-  419 (458)
T 3nmz_A          343 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN--CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD-  419 (458)
T ss_dssp             CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHH-
T ss_pred             CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc--cHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence            432110124557889999994    899999998864  6888888777788888999999999999644444223332 


Q ss_pred             ccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCH
Q 048744          223 SEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQE  283 (312)
Q Consensus       223 ~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~  283 (312)
                       ...+|.|                     +++ +.   .  .++.++...+.+|..|++.+
T Consensus       420 -~G~I~~L---------------------v~L-L~---s--~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          420 -MGAVSML---------------------KNL-IH---S--KHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             -HTHHHHH---------------------HTT-TT---C--SSHHHHHHHHHHHHHHHTCC
T ss_pred             -CCCHHHH---------------------HHH-Hh---C--CCHHHHHHHHHHHHHHHcCC
Confidence             2334443                     221 21   1  27889999999999998753

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.37  E-value=1.3e-11  Score=120.97  Aligned_cols=119  Identities=21%  Similarity=0.237  Sum_probs=100.3

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhc-cC-ccchhhHHHHHHhcCCChhHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLS-EN-KEVSEPATEALVNLSQNSELAG   80 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~-d~-~~~~~~Al~~LiNLS~d~~~~~   80 (312)
                      .++.||++|++++++++..|+..|..++.. ++++..|...  +.|+.|+.+++ .+ ..+...|+.+|-|||.++..+.
T Consensus        45 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~--G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~  122 (457)
T 1xm9_A           45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ--NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE  122 (457)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT--TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence            478899999999999999999999999976 8888888764  68999999998 55 7899999999999999988999


Q ss_pred             HhhhhhHHHHHHHHHc--------CCC--------ChhHHHHHHHHHhhcCCccchHHHhh
Q 048744           81 KMVQMGMIKTAMDLLY--------KPD--------SSITRLLVMLLVNLTQLDYGISSLLQ  125 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~--------~~~--------~~~ad~a~mLLsNLT~~~~~~~~ll~  125 (312)
                      .+++ |+|+.++..+.        ++.        ......++..|+||++.+++...+.+
T Consensus       123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~  182 (457)
T 1xm9_A          123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN  182 (457)
T ss_dssp             HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT
T ss_pred             HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            9999 99999999993        221        23444899999999998766555554

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.37  E-value=6.1e-12  Score=124.10  Aligned_cols=195  Identities=16%  Similarity=0.156  Sum_probs=158.2

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCC--ccchhhhhhcccchHHHHHHhh-ccC-ccchhhHHHHHHhcCC-ChhH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS--EDGLQSLSKYSKIALPSLARLL-SEN-KEVSEPATEALVNLSQ-NSEL   78 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~--~~~~~~i~~~~~~~i~~L~~L~-~d~-~~~~~~Al~~LiNLS~-d~~~   78 (312)
                      .++.|+++|++++++++..|+..|..++..  +++|..|...  +.|+.|+.++ +.+ ..+.+.|+.+|-|||. ++..
T Consensus       244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~--GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n  321 (458)
T 3nmz_A          244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV--GSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  321 (458)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT--THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH
Confidence            388999999999999999999999999974  5677777653  6899999974 444 6788999999999998 7788


Q ss_pred             HHHhh-hhhHHHHHHHHHcCCCCh----hHHHHHHHHHhhcC----CccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCC
Q 048744           79 AGKMV-QMGMIKTAMDLLYKPDSS----ITRLLVMLLVNLTQ----LDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSE  149 (312)
Q Consensus        79 ~~~l~-~~~~i~~lv~~i~~~~~~----~ad~a~mLLsNLT~----~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~  149 (312)
                      +..++ ..|+|+.|+..+..+...    ....++..|+||+.    .+++...+.+.+       .++.|++++..+...
T Consensus       322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G-------~i~~Lv~LL~~~~~~  394 (458)
T 3nmz_A          322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN-------CLQTLLQHLKSHSLT  394 (458)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-------HHHHHHHHSSCSCHH
T ss_pred             HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc-------cHHHHHHHHcCCChH
Confidence            88888 569999999999876653    78889999999994    666665555532       378999998766432


Q ss_pred             CCCCchhhHHHHHHhhc-CChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccch
Q 048744          150 ASDDPFEHVGSILVNIS-KKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAE  213 (312)
Q Consensus       150 ~~~~~~~~la~vl~NlS-~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~  213 (312)
                          -....+.++.|++ ..++.|..+++.  |.+..|+..+.+++..-|+.++.+|+|++....
T Consensus       395 ----v~~~A~~aL~nLa~~~~~~~~~i~~~--G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          395 ----IVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             ----HHHHHHHHHHHHHSSCHHHHHHHHHH--THHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence                2456789999999 689999999886  467777777777777778999999999997643

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.36  E-value=1.9e-11  Score=123.91  Aligned_cols=260  Identities=18%  Similarity=0.202  Sum_probs=177.6

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCC--CccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCCChhHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTG--SEDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQNSELA   79 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~--~~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~d~~~~   79 (312)
                      .++.||++|++++++||..|+..|..++.  +.+++..|.+.  +.|+.|+.+++..  ..+.+.|..+|.|||.++..+
T Consensus        91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~--GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k  168 (584)
T 3l6x_A           91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC--DGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK  168 (584)
T ss_dssp             HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHT--THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred             CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHc--CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence            58899999999999999999999999997  48899988765  6899999999863  567899999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHcC------------------CCChhHHHHHHHHHhhcCCccc-hHHHhhhhhhhhhhhhHHHHH
Q 048744           80 GKMVQMGMIKTAMDLLYK------------------PDSSITRLLVMLLVNLTQLDYG-ISSLLQVEDEQIQGLYVMKLV  140 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~------------------~~~~~ad~a~mLLsNLT~~~~~-~~~ll~~~~e~~~~~~l~~Ll  140 (312)
                      ..|++ +.|+.|+..+..                  +.......++..|.||+...+. ...+.+..     | .+..|+
T Consensus       169 ~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~-----G-li~~LV  241 (584)
T 3l6x_A          169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECD-----G-LVDALI  241 (584)
T ss_dssp             HHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHST-----T-HHHHHH
T ss_pred             HHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-----C-cHHHHH
Confidence            99995 568999887621                  1235566799999999998754 44554432     2 245777


Q ss_pred             HHHhcCC--CCCCCCchhhHHHHHHhhcCChh--------------------------hhhhhcccccchhhhhhhccc-
Q 048744          141 RSFCRSS--SEASDDPFEHVGSILVNISKKEA--------------------------GRKILLDPKRGLLKQIVRQFD-  191 (312)
Q Consensus       141 ~~f~~~~--~~~~~~~~~~la~vl~NlS~~~~--------------------------gR~~~l~~~~~~l~~ll~~~~-  191 (312)
                      ..+-...  .............+|.|||...+                          |-.++.+++  .++.++..+. 
T Consensus       242 ~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~--~v~~Ll~LL~~  319 (584)
T 3l6x_A          242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPE--VVRIYISLLKE  319 (584)
T ss_dssp             HHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHH--HHHHHHHHHHH
T ss_pred             HHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhccc--HHHHHHHHHcc
Confidence            7665321  11111235667788999886532                          222222221  2344455443 


Q ss_pred             CCchhhHhhHHHHHHhhhccchhhhH---HHhhhccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHH
Q 048744          192 SSNYLRKKGVSGTIRNCCFEAEHQLQ---NLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEI  268 (312)
Q Consensus       192 ~~s~iRR~gva~~ikNccF~~~~H~~---~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~I  268 (312)
                      +.+.--++.++++|.|+|.....+..   ..+. ....+|.|.--|..                           .++.+
T Consensus       320 s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~-~~~glp~Lv~LL~s---------------------------~~~~v  371 (584)
T 3l6x_A          320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALR-QEKALSAIADLLTN---------------------------EHERV  371 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT-SHHHHHHHHHGGGC---------------------------SCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH-HcCcHHHHHHHHcC---------------------------CCHHH
Confidence            45677789999999999986533210   1121 22334544322222                           15678


Q ss_pred             HHHHHHHHHHHhcCHhHHHHHHhCCcchhccccc
Q 048744          269 RIQALESIYLITLQEAGLRAFWSVNGPRLVHGSG  302 (312)
Q Consensus       269 r~~llE~Ll~L~~t~~gR~~lr~~~vy~vlr~~~  302 (312)
                      +...+-+|-.|+.-..-++.+...+++++++-..
T Consensus       372 ~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~  405 (584)
T 3l6x_A          372 VKAASGALRNLAVDARNKELIGKHAIPNLVKNLP  405 (584)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhc
Confidence            8888888888888777778887777776665433

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.36  E-value=2.9e-11  Score=120.17  Aligned_cols=255  Identities=17%  Similarity=0.198  Sum_probs=186.5

Q ss_pred             hHHHHHhccC-CCCHHHHHHHHHHHHhcCC-CccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744            4 ELEELLGFLC-SPSPSVKKAAVDIVRGLTG-SEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA   79 (312)
Q Consensus         4 ~l~ELv~FL~-~~~~~vR~~Al~~llgls~-~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~   79 (312)
                      -++-||+||+ +.+++++..|+..|..++. +.+....+...  ++|+.|+.++.+. ..+...|+.+|-|++.+ +..+
T Consensus       120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~--Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r  197 (529)
T 3tpo_A          120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR  197 (529)
T ss_dssp             HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence            3678999997 5789999999999999865 45565666653  7899999999888 88999999999999975 7888


Q ss_pred             HHhhhhhHHHHHHHHHcCCCCh-----hHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCc
Q 048744           80 GKMVQMGMIKTAMDLLYKPDSS-----ITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDP  154 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~~~~~-----~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~  154 (312)
                      ..+++.|++..++..+.++...     ....++..|+|+++.......+...     .+ .++.|+.++..+..    .-
T Consensus       198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~-----~~-~lp~L~~LL~~~~~----~v  267 (529)
T 3tpo_A          198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV-----EQ-ILPTLVRLLHHNDP----EV  267 (529)
T ss_dssp             HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHH-----HH-HHHHHHHHTTSSCH----HH
T ss_pred             HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHH-----hh-HHHHHHHHhcCCcH----HH
Confidence            8888889999999999876532     4567889999999987544332221     11 36677777655432    12


Q ss_pred             hhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcc
Q 048744          155 FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPV  234 (312)
Q Consensus       155 ~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPl  234 (312)
                      ....+..|+|++..+..+..++.. .|.+..|+..+.+++..-+.-++.+|.|++-..+.+...++.  ...+|.|    
T Consensus       268 ~~~a~~aL~~l~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~--~g~l~~L----  340 (529)
T 3tpo_A          268 LADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID--AGALAVF----  340 (529)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTGGGGH----
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHh-ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh--cccHHHH----
Confidence            445778999999988776554432 257788888778888888889999999998766655323332  2333333    


Q ss_pred             cCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhccc
Q 048744          235 AGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVHG  300 (312)
Q Consensus       235 aG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr~  300 (312)
                                       +++ +.   .  +++.||...+-+|-.||+ +...+..+.+.|+.+.|-.
T Consensus       341 -----------------~~L-L~---~--~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~  384 (529)
T 3tpo_A          341 -----------------PSL-LT---N--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG  384 (529)
T ss_dssp             -----------------HHH-TT---C--SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred             -----------------HHH-Hc---C--CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence                             221 21   1  278899999999999987 6677788888888775433

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.34  E-value=4.9e-11  Score=117.73  Aligned_cols=251  Identities=16%  Similarity=0.142  Sum_probs=185.3

Q ss_pred             hHHHHHhccCCC-CHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744            4 ELEELLGFLCSP-SPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA   79 (312)
Q Consensus         4 ~l~ELv~FL~~~-~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~   79 (312)
                      .++.|+++|.++ +++||..|+..|..++.. .+.+..+...  ++++.|+.++.+. ..+...|+.+|-|++.+ +..+
T Consensus       131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~--g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~  208 (530)
T 1wa5_B          131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA--DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  208 (530)
T ss_dssp             CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence            478899999987 999999999999999875 4555555543  6899999999877 88999999999999976 6778


Q ss_pred             HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc-cchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhH
Q 048744           80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD-YGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHV  158 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~-~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~l  158 (312)
                      ..++..|+++.++..+.+++......++..|+||++.. ........      .+ .++.|+.++..++    ..-....
T Consensus       209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~------~~-~l~~L~~lL~~~d----~~v~~~a  277 (530)
T 1wa5_B          209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV------SQ-ALPTLAKLIYSMD----TETLVDA  277 (530)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH------GG-GHHHHHHHTTCCC----HHHHHHH
T ss_pred             HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHH------Hh-HHHHHHHHHcCCC----HHHHHHH
Confidence            88888899999999999977788889999999999876 32222111      11 4677888775442    1224557


Q ss_pred             HHHHHhhcCC-hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744          159 GSILVNISKK-EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN  237 (312)
Q Consensus       159 a~vl~NlS~~-~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~  237 (312)
                      +.+|.|++.. ++.+..+++.  +.+..|+..+.+++..-|..++.+|.|+|...+.....++.  ..++|.|+      
T Consensus       278 ~~~L~~L~~~~~~~~~~~~~~--~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~------  347 (530)
T 1wa5_B          278 CWAISYLSDGPQEAIQAVIDV--RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN--AGVLPALR------  347 (530)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHT--TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHH------
T ss_pred             HHHHHHHhCCCHHHHHHHHhc--CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH--cchHHHHH------
Confidence            8999999975 5667777764  47888888877788888899999999999876655322322  24555442      


Q ss_pred             CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhc
Q 048744          238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLV  298 (312)
Q Consensus       238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vl  298 (312)
                                     + .+..     +++.+|...+.+|-.|+. +...++.+-+.|+.+.|
T Consensus       348 ---------------~-lL~~-----~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L  388 (530)
T 1wa5_B          348 ---------------L-LLSS-----PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL  388 (530)
T ss_dssp             ---------------H-HTTC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred             ---------------H-HHcC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence                           2 1211     168899999999999985 45555555556665544

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.34  E-value=6.8e-11  Score=117.14  Aligned_cols=262  Identities=15%  Similarity=0.150  Sum_probs=188.4

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcC-CC-ccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcC-CChhH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLT-GS-EDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLS-QNSEL   78 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls-~~-~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS-~d~~~   78 (312)
                      .++|+|.-|.+.+++++..|+..+..+. .. .+.++.|.+.  ++||.|+.+++..  +.+...|+.+|-|++ .+++.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~--G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~  135 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRA--GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ  135 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHT--THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC--CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence            4899999999999999999999988753 32 3345566553  7999999998644  678889999999995 57788


Q ss_pred             HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHH-HhhhhhhhhhhhhHHHHHHHHhcCCCCCCC-Cchh
Q 048744           79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISS-LLQVEDEQIQGLYVMKLVRSFCRSSSEASD-DPFE  156 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~-ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~-~~~~  156 (312)
                      ...+++.|+|+.++..+.+++......|+..|.||+........ +++.+       .+..|+.++......... ....
T Consensus       136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G-------~i~~Ll~lL~~~~~~~~~~~~~~  208 (510)
T 3ul1_B          136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHG-------AIDPLLALLAVPDLSTLACGYLR  208 (510)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-------CHHHHHHHTCSSCGGGSCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcC-------ChHHHHHHHHhccchhhhHHHHH
Confidence            88999999999999999999999999999999999987644443 33322       377888888765432211 1234


Q ss_pred             hHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccC
Q 048744          157 HVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAG  236 (312)
Q Consensus       157 ~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG  236 (312)
                      .++..++|+++....+..+... .+.+..|+..+.+.+..-+..++.+|.|+|.....+. ..+. +..++|.|.     
T Consensus       209 ~a~~~L~nl~~~~~~~~~~~~~-~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~-~~i~-~~g~i~~Lv-----  280 (510)
T 3ul1_B          209 NLTWTLSNLCRNKNPAPPLDAV-EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI-EMVV-KKGVVPQLV-----  280 (510)
T ss_dssp             HHHHHHHHHHCCCSSCCCHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH-HHHH-TTTCHHHHH-----
T ss_pred             HHHHHHHHHhhcccchhHHHHH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhH-HHHH-hcccchhhh-----
Confidence            5678888888766544433221 1355556666677777788889999999998776663 2332 223444442     


Q ss_pred             CCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhccccccC
Q 048744          237 NKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVHGSGTE  304 (312)
Q Consensus       237 ~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr~~~~~  304 (312)
                                      + .+.   .  +++.++...+.+|-.+++ +...+..+.+.|+.+.|-..-.+
T Consensus       281 ----------------~-lL~---~--~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~  327 (510)
T 3ul1_B          281 ----------------K-LLG---A--TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN  327 (510)
T ss_dssp             ----------------H-HHT---C--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC
T ss_pred             ----------------h-hhc---C--CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC
Confidence                            2 121   1  268899999999999865 45667788888988877765543

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.34  E-value=4.5e-11  Score=125.06  Aligned_cols=257  Identities=12%  Similarity=0.071  Sum_probs=186.3

Q ss_pred             HHHHHhccCCC--CHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCCh-----
Q 048744            5 LEELLGFLCSP--SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNS-----   76 (312)
Q Consensus         5 l~ELv~FL~~~--~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~-----   76 (312)
                      ++-++.||+++  ++++|+.|++.|.-+|..++.++.+.... ++|+.|+.+++.. ..+...|+.+|.||+.+.     
T Consensus       379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~-g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~  457 (810)
T 3now_A          379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDK-ASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM  457 (810)
T ss_dssp             HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCC
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHcc-chHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhh
Confidence            44588889987  89999999999999999999998887643 7999999999876 889999999999999742     


Q ss_pred             -------------------------hHH---HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhh
Q 048744           77 -------------------------ELA---GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVED  128 (312)
Q Consensus        77 -------------------------~~~---~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~  128 (312)
                                               .+.   +.+++.|+|+.++..+.++++.....|+..|.||+..+++...+++.+.
T Consensus       458 ~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Ga  537 (810)
T 3now_A          458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGG  537 (810)
T ss_dssp             CCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred             hHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence                                     233   6778889999999999999999999999999999988776666655431


Q ss_pred             h---------h---hhhh-------------------------hHHHHHHHHhcCCCCCCCCch--hhHHHHHHhhcCCh
Q 048744          129 E---------Q---IQGL-------------------------YVMKLVRSFCRSSSEASDDPF--EHVGSILVNISKKE  169 (312)
Q Consensus       129 e---------~---~~~~-------------------------~l~~Ll~~f~~~~~~~~~~~~--~~la~vl~NlS~~~  169 (312)
                      -         +   ....                         .+++|++++..+     ....  ......|.||+..+
T Consensus       538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~-----~~~l~~~eAl~AL~NLa~~~  612 (810)
T 3now_A          538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD-----CTALENFESLMALTNLASMN  612 (810)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT-----SCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC-----CcHHHHHHHHHHHHHHhcCC
Confidence            0         0   0000                         133444443211     0111  12467899999985


Q ss_pred             -hhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCCCChhhhccC
Q 048744          170 -AGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKI  248 (312)
Q Consensus       170 -~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~l  248 (312)
                       +.|..+++.  |.+..|+..+.|++..-|+-++.+|.|.+.+.+... .+. .+.+.+|.|+..+..            
T Consensus       613 d~~~~~Ii~a--G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~-~~v-~~~g~l~~Lv~LL~s------------  676 (810)
T 3now_A          613 ESVRQRIIKE--QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK-MFE-GNNDRVKFLALLCED------------  676 (810)
T ss_dssp             HHHHHHHHHT--THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH-HHH-SSSSHHHHHHHGGGC------------
T ss_pred             HHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH-HHH-hccCcHHHHHHHhcC------------
Confidence             678888875  467888877677777778999999999999877652 333 333455544332221            


Q ss_pred             cHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHh-CCcchhc
Q 048744          249 PLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWS-VNGPRLV  298 (312)
Q Consensus       249 p~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~-~~vy~vl  298 (312)
                                     +|..+|...+-||-.|++ +....+.+-+ .|+.+.|
T Consensus       677 ---------------~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~L  713 (810)
T 3now_A          677 ---------------EDEETATACAGALAIITSVSVKCCEKILAIASWLDIL  713 (810)
T ss_dssp             ---------------SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHH
T ss_pred             ---------------CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHH
Confidence                           267888888999999988 6665554444 5555533

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.32  E-value=4.1e-11  Score=117.98  Aligned_cols=253  Identities=16%  Similarity=0.139  Sum_probs=186.9

Q ss_pred             hHHHHHhccCCCC-HHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744            4 ELEELLGFLCSPS-PSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA   79 (312)
Q Consensus         4 ~l~ELv~FL~~~~-~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~   79 (312)
                      .++.|+++|++++ +++|..|+..|..++.. .+.+..+...  ++++.|+.++.+. ..+...|+.+|-|++.+ +..+
T Consensus       118 ~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~  195 (528)
T 4b8j_A          118 VVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH--GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR  195 (528)
T ss_dssp             CHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC--CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence            4788999999876 99999999999998875 6677666653  6899999999887 88999999999999966 6678


Q ss_pred             HHhhhhhHHHHHHHHH-cCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhH
Q 048744           80 GKMVQMGMIKTAMDLL-YKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHV  158 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i-~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~l  158 (312)
                      ..+.+.|+++.++..+ .+++......++..|+||+...........      .+ .++.|+.++..++.    .-....
T Consensus       196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~------~~-~l~~L~~lL~~~~~----~v~~~a  264 (528)
T 4b8j_A          196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT------RP-ALPALARLIHSNDE----EVLTDA  264 (528)
T ss_dssp             HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH------TT-HHHHHHHHTTCCCH----HHHHHH
T ss_pred             HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH------HH-HHHHHHHHHCCCCH----HHHHHH
Confidence            8888889999999999 556677888999999999988633322111      11 46777777754421    124557


Q ss_pred             HHHHHhhcCChhhh-hhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744          159 GSILVNISKKEAGR-KILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN  237 (312)
Q Consensus       159 a~vl~NlS~~~~gR-~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~  237 (312)
                      ..+|.|++..+..+ +.+++.  |.+..|+..+.+++..-|..++.+|.|+|...+.....++.  ..++|.|+      
T Consensus       265 ~~aL~~l~~~~~~~~~~~~~~--g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~~~l~~L~------  334 (528)
T 4b8j_A          265 CWALSYLSDGTNDKIQAVIEA--GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID--HQALPCLL------  334 (528)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHT--TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT--TTHHHHHH------
T ss_pred             HHHHHHHHcCCHHHHHHHHHc--CHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH--hhhHHHHH------
Confidence            78999999887776 455554  47888888777777778899999999999866555323332  34555542      


Q ss_pred             CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhcc
Q 048744          238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVH  299 (312)
Q Consensus       238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr  299 (312)
                                     + .+...    .++.+|...+-+|-.||. +......+...|+.+.|-
T Consensus       335 ---------------~-lL~~~----~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~  377 (528)
T 4b8j_A          335 ---------------S-LLTQN----LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLV  377 (528)
T ss_dssp             ---------------H-HHHSC----CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHH
T ss_pred             ---------------H-HHcCC----CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
Confidence                           2 12210    168899999999999986 555666777767766443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.31  E-value=6.1e-11  Score=116.76  Aligned_cols=255  Identities=15%  Similarity=0.153  Sum_probs=186.3

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhc-CCCc-cchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCCC-hhH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGL-TGSE-DGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQN-SEL   78 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgl-s~~~-~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~d-~~~   78 (312)
                      .+++|+++|.++++++|..|+..+..+ ++.. +++..+...  ++++.|+.++.+.  +.+...|+.+|-|++.+ +..
T Consensus        75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~--g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  152 (528)
T 4b8j_A           75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQS--GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN  152 (528)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHT--TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC--CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            489999999999999999999999887 3333 555556543  6899999999765  67889999999999986 788


Q ss_pred             HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchH-HHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744           79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGIS-SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH  157 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~-~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~  157 (312)
                      ...+++.|+|+.++..+.+++......|+..|.||+....... .+++.      | .+..|+.++....   ...-...
T Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~------g-~l~~Ll~lL~~~~---~~~v~~~  222 (528)
T 4b8j_A          153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLAN------G-ALLPLLAQLNEHT---KLSMLRN  222 (528)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHT------T-CHHHHHHTCCTTC---CHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHC------C-cHHHHHHHHhcCC---CHHHHHH
Confidence            8888888999999999999888899999999999997654333 33332      1 4778888874432   1123566


Q ss_pred             HHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744          158 VGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN  237 (312)
Q Consensus       158 la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~  237 (312)
                      .+.+|.|++.....+.....  .+.+..|+..+.+.+..-|..++.+|.|+|...+.....++.  ..++|.|+--    
T Consensus       223 a~~~L~~L~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~--~g~v~~Lv~l----  294 (528)
T 4b8j_A          223 ATWTLSNFCRGKPQPSFEQT--RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVEL----  294 (528)
T ss_dssp             HHHHHHHHHCSSSCCCHHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH--TTCHHHHHHH----
T ss_pred             HHHHHHHHHcCCCCCcHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--cCHHHHHHHH----
Confidence            78999999988543333332  246777777777778888899999999999765554212222  2344444221    


Q ss_pred             CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhcccc
Q 048744          238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVHGS  301 (312)
Q Consensus       238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr~~  301 (312)
                                        +..     +++.++...+.+|-.||+ +...++.+...|+.+.|-..
T Consensus       295 ------------------L~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  336 (528)
T 4b8j_A          295 ------------------LLH-----PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSL  336 (528)
T ss_dssp             ------------------TTC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred             ------------------HcC-----CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHH
Confidence                              211     157889999999999987 56677777777777755443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.30  E-value=2.8e-11  Score=126.16  Aligned_cols=248  Identities=15%  Similarity=0.084  Sum_probs=185.6

Q ss_pred             chHHHHHhccCC-CCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744            3 NELEELLGFLCS-PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA   79 (312)
Q Consensus         3 ~~l~ELv~FL~~-~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~   79 (312)
                      ..++.|+.+|++ .++++|..|+..|..++...+++..|...  ++|+.|+.++.+. ..+...|+.+|.||+.+ +...
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~--g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~  269 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKS--GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK  269 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence            357889999984 59999999999999999998888888764  7899999999888 88999999999999965 5667


Q ss_pred             HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCC-ccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhH
Q 048744           80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQL-DYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHV  158 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~-~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~l  158 (312)
                      ..+.+.|+|+.++..+.+++......++..|.||+.. +++...+.+.+       .+..|+.++-.+...   ....+.
T Consensus       270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~-------~i~~Lv~lL~~~~~~---~~~~~a  339 (780)
T 2z6g_A          270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-------GPQALVNIMRTYTYE---KLLWTT  339 (780)
T ss_dssp             HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTT-------HHHHHHHHHTTCCCH---HHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC-------CHHHHHHHHhcCCHH---HHHHHH
Confidence            7777789999999999988777778888999999964 45555444421       367888877554321   223456


Q ss_pred             HHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCC
Q 048744          159 GSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNK  238 (312)
Q Consensus       159 a~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~e  238 (312)
                      +.++.|++..++.|..+++.+  .+..|+..+.+.+..-++.++++++|+|-......     ....++|          
T Consensus       340 ~~aL~~Ls~~~~~~~~i~~~g--~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~-----~~~~~i~----------  402 (780)
T 2z6g_A          340 SRVLKVLSVCSSNKPAIVEAG--GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE-----GMEGLLG----------  402 (780)
T ss_dssp             HHHHHHHHTSTTHHHHHHHTT--HHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS-----CCHHHHH----------
T ss_pred             HHHHHHhhcChHHHHHHHHhc--hHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh-----hhhhHHH----------
Confidence            899999999999999998864  77888887776666667778999999996542210     0011222          


Q ss_pred             CCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcC-HhHHHHHHhCCcch
Q 048744          239 VYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQ-EAGLRAFWSVNGPR  296 (312)
Q Consensus       239 e~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t-~~gR~~lr~~~vy~  296 (312)
                                 .-+++ +.   .  +++.+|...+.+|..|+.. ...++.+.+.|+.+
T Consensus       403 -----------~Lv~l-L~---~--~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~  444 (780)
T 2z6g_A          403 -----------TLVQL-LG---S--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE  444 (780)
T ss_dssp             -----------HHHHH-TT---C--SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHH
T ss_pred             -----------HHHHH-Hc---C--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence                       22331 21   1  2789999999999999875 35677777666554

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.28  E-value=1.1e-10  Score=115.91  Aligned_cols=254  Identities=17%  Similarity=0.108  Sum_probs=185.8

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-c-----cchhhHHHHHHhcCCCh
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-K-----EVSEPATEALVNLSQNS   76 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~-----~~~~~Al~~LiNLS~d~   76 (312)
                      .++-|+.+|.+++++||..|+..|..+++. ++.+..+...  ++++.|+.++... .     ...+.|..+|-|++.+.
T Consensus       163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~--g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  240 (529)
T 3tpo_A          163 AIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKH--GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  240 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHc--CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence            578899999999999999999999999986 6677777654  6899999998764 2     23567889999998764


Q ss_pred             hHHHHhhh-hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCch
Q 048744           77 ELAGKMVQ-MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPF  155 (312)
Q Consensus        77 ~~~~~l~~-~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~  155 (312)
                      .-...+.. .++++.|+..+.++++.....+|..|+|++........++..     .| .++.|++++..+..    .-.
T Consensus       241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~-----~g-~i~~Lv~lL~~~~~----~v~  310 (529)
T 3tpo_A          241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK-----KG-VVPQLVKLLGATEL----PIV  310 (529)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT-----TT-CHHHHHHHHTCSCH----HHH
T ss_pred             cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh-----cc-chHHHHHHhcCCCh----hHH
Confidence            33333333 488999999999988888889999999999887654443221     12 47788888865532    123


Q ss_pred             hhHHHHHHhhcC-ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcc
Q 048744          156 EHVGSILVNISK-KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPV  234 (312)
Q Consensus       156 ~~la~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPl  234 (312)
                      ...+.++.|++. .++.+..+++.+  .+..|+..+.+++..-|..++.+|.|+|.....|...+.  +.+++|.++--+
T Consensus       311 ~~a~~aL~nl~~~~~~~~~~i~~~g--~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~--~~g~i~~Lv~lL  386 (529)
T 3tpo_A          311 TPALRAIGNIVTGTDEQTQKVIDAG--ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV--NHGLVPFLVGVL  386 (529)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTT--GGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHH--HTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHhhcc--cHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHH--hcCcHHHHHHHh
Confidence            456788999876 456677777654  666666666777777778899999999998888753232  234555542211


Q ss_pred             cCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc--CHhHHHHHHhCCcchhccc
Q 048744          235 AGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL--QEAGLRAFWSVNGPRLVHG  300 (312)
Q Consensus       235 aG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~--t~~gR~~lr~~~vy~vlr~  300 (312)
                                        +       .  .++++|...+-||..||.  +.+-+.+|.+.|+.+.|-+
T Consensus       387 ------------------~-------~--~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~  427 (529)
T 3tpo_A          387 ------------------S-------K--ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN  427 (529)
T ss_dssp             ------------------H-------S--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred             ------------------c-------C--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHH
Confidence                              1       1  278899999999999875  6777888999998875544

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.28  E-value=2.8e-10  Score=108.39  Aligned_cols=251  Identities=18%  Similarity=0.154  Sum_probs=183.5

Q ss_pred             chHHHHHhccCCC-CHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhH
Q 048744            3 NELEELLGFLCSP-SPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SEL   78 (312)
Q Consensus         3 ~~l~ELv~FL~~~-~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~   78 (312)
                      .-++.|+++|+++ ++++|..|+..|..++.. .+....+...  ++++.|+.++.++ +.+...|+.+|-|++.+ +..
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA--GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHH
Confidence            3478899999987 999999999999998764 4555555442  6899999999887 88999999999999976 567


Q ss_pred             HHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcCCc-cchH-HHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCch
Q 048744           79 AGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQLD-YGIS-SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPF  155 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~~~-~~~~-~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~  155 (312)
                      +..+++.|+++.++..+.+ ++......++..|+|+++.. .... .+.       .+ .++.|++.+..++.    .-.
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-------~~-~l~~L~~~l~~~~~----~v~  209 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-------SP-CLNVLSWLLFVSDT----DVL  209 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-------GG-GHHHHHHHTTCCCH----HHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-------HH-HHHHHHHHHccCCH----HHH
Confidence            7888888999999999985 66788889999999999875 2111 111       11 46778877754321    224


Q ss_pred             hhHHHHHHhhcCC-hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcc
Q 048744          156 EHVGSILVNISKK-EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPV  234 (312)
Q Consensus       156 ~~la~vl~NlS~~-~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPl  234 (312)
                      ...+.+|.|++.. ++.+..+...  +.+..++..+.+++..-|..++.+|.|+|...+.....++.  ..++|.|    
T Consensus       210 ~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L----  281 (450)
T 2jdq_A          210 ADACWALSYLSDGPNDKIQAVIDA--GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN--CSALQSL----  281 (450)
T ss_dssp             HHHHHHHHHHTSSSHHHHHHHHHT--TTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT--TTHHHHH----
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHc--CcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH--CccHHHH----
Confidence            5677899999985 4566666654  46778887777788888999999999999876554322222  1344443    


Q ss_pred             cCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhc
Q 048744          235 AGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLV  298 (312)
Q Consensus       235 aG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vl  298 (312)
                                       ++ .+..     +++.+|...+.+|-.|+. +...++.+.+.|+.+.|
T Consensus       282 -----------------~~-ll~~-----~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  323 (450)
T 2jdq_A          282 -----------------LH-LLSS-----PKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL  323 (450)
T ss_dssp             -----------------HH-HTTC-----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred             -----------------HH-HHcC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence                             22 1221     268899999999999986 66677766666666644

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.27  E-value=1.2e-10  Score=111.10  Aligned_cols=252  Identities=19%  Similarity=0.182  Sum_probs=181.7

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCc-cchhhhhhcccchHHHHHHhhcc-C-ccchhhHHHHHHhcCCC--hhH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSE-DGLQSLSKYSKIALPSLARLLSE-N-KEVSEPATEALVNLSQN--SEL   78 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~-~~~~~i~~~~~~~i~~L~~L~~d-~-~~~~~~Al~~LiNLS~d--~~~   78 (312)
                      -++-|+++|++++++||..|+..|..++... +.+..+...  ++++.|+.++.+ . ..+...|+.+|.|++.+  +..
T Consensus       108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~  185 (450)
T 2jdq_A          108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDC--NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP  185 (450)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHC--CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            4788999999999999999999999998774 566666543  689999999985 4 78899999999999965  332


Q ss_pred             HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccc-hHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744           79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYG-ISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH  157 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~-~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~  157 (312)
                      ...+. .++++.++..+.++++.....++..|+||+..... ...+...      + .++.|++++..++.    .-...
T Consensus       186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~-~i~~L~~ll~~~~~----~v~~~  253 (450)
T 2jdq_A          186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDA------G-VCRRLVELLMHNDY----KVVSP  253 (450)
T ss_dssp             CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHT------T-THHHHHHHTTCSCH----HHHHH
T ss_pred             CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHc------C-cHHHHHHHHCCCch----hHHHH
Confidence            22333 58899999999988888889999999999987532 2222221      1 47788888754321    12355


Q ss_pred             HHHHHHhhcCChh-hhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccC
Q 048744          158 VGSILVNISKKEA-GRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAG  236 (312)
Q Consensus       158 la~vl~NlS~~~~-gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG  236 (312)
                      .+..|.|++.... .++.+++.  |.+..++..+.+++..-|..++.+|.|+|.....+...++.  .+++|.++     
T Consensus       254 a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~-----  324 (450)
T 2jdq_A          254 ALRAVGNIVTGDDIQTQVILNC--SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID--ANIFPALI-----  324 (450)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHTT--THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHH-----
T ss_pred             HHHHHHHHhhCChHHHHHHHHC--ccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHH-----
Confidence            6789999987644 45566665  47888888877777888889999999999765555323332  24555542     


Q ss_pred             CCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc--CHhHHHHHHhCCcchhccc
Q 048744          237 NKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL--QEAGLRAFWSVNGPRLVHG  300 (312)
Q Consensus       237 ~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~--t~~gR~~lr~~~vy~vlr~  300 (312)
                                      +. +..     +++++|...+.+|-.||.  +....+++.+.|+.+.|-+
T Consensus       325 ----------------~~-l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~  368 (450)
T 2jdq_A          325 ----------------SI-LQT-----AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD  368 (450)
T ss_dssp             ----------------HH-HHH-----SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHH
T ss_pred             ----------------HH-Hhc-----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence                            21 211     278999999999999986  5566676767666664443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.27  E-value=7.5e-11  Score=114.94  Aligned_cols=212  Identities=17%  Similarity=0.134  Sum_probs=162.6

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhcc--CccchhhHHHHHHhcCCChhHHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSE--NKEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d--~~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      .++.|+.+|+++++++|..|+..|..++...+++..++... +.++.|+.++..  ...+...|+.+|-|||.++..+..
T Consensus        18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~-~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~   96 (529)
T 1jdh_A           18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP-QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA   96 (529)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCc-chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence            48899999999999999999999999999888887777543 689999998853  367889999999999999999999


Q ss_pred             hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHH-HhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH
Q 048744           82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISS-LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS  160 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~-ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~  160 (312)
                      +++.|.|+.++..+.++++.....++..|.||+..+..... +.+.      | .++.|++++..+..    .-....+.
T Consensus        97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~------g-~i~~L~~ll~~~~~----~~~~~~~~  165 (529)
T 1jdh_A           97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA------G-GLQKMVALLNKTNV----KFLAITTD  165 (529)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHH------T-HHHHHHHGGGCCCH----HHHHHHHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHc------C-CHHHHHHHHhcCCH----HHHHHHHH
Confidence            99999999999999998888889999999999987544333 2222      1 47788888865421    11233456


Q ss_pred             HHHhhcC-Chhhhhhhcccccchhhhhhhccc-CCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhh
Q 048744          161 ILVNISK-KEAGRKILLDPKRGLLKQIVRQFD-SSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLL  232 (312)
Q Consensus       161 vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~-~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLl  232 (312)
                      +|.|++. .+++|..+.+.+  .+..++..+. .....++..++.+++|+|.+.+... .+..  ...+|.++-
T Consensus       166 ~L~~la~~~~~~~~~i~~~~--~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~--~g~~~~L~~  234 (529)
T 1jdh_A          166 CLQILAYGNQESKLIILASG--GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVE--AGGMQALGL  234 (529)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT--HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHH-HHHH--TTHHHHHHT
T ss_pred             HHHHHHhCCHHHHHHHHHCC--CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHH-HHHH--CCCHHHHHH
Confidence            8999987 489999888764  4555555443 3556788899999999998766542 3433  245665543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.23  E-value=8.3e-11  Score=116.11  Aligned_cols=253  Identities=18%  Similarity=0.156  Sum_probs=183.6

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCCh-hHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNS-ELAG   80 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~-~~~~   80 (312)
                      .++-|+.+|++++++||..|+..|..++.. ++.+..+...  ++++.|+.++.+. ..+...|+.+|.||+.+. ....
T Consensus       174 ~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~  251 (530)
T 1wa5_B          174 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC--NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD  251 (530)
T ss_dssp             CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHc--CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence            478899999999999999999999999877 5566666553  6899999999887 788999999999999653 2233


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCcc-chHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY-GISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG  159 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~-~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la  159 (312)
                      .....++++.++..+.++++.....++..|+||+.... .+..+++.      + .++.|+.++..+..    .-.....
T Consensus       252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~------~-~v~~Lv~lL~~~~~----~v~~~a~  320 (530)
T 1wa5_B          252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV------R-IPKRLVELLSHEST----LVQTPAL  320 (530)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT------T-CHHHHHHGGGCSCH----HHHHHHH
T ss_pred             HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhc------C-cHHHHHHHHCCCCh----hhHHHHH
Confidence            44446899999999999888888899999999997653 23333321      1 36788888764421    1234567


Q ss_pred             HHHHhhcCC-hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCC
Q 048744          160 SILVNISKK-EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNK  238 (312)
Q Consensus       160 ~vl~NlS~~-~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~e  238 (312)
                      .++.|++.. +..++.+++.  +.+..++..+.+++..-|..++.+|.|+|.....+...++.  .+++|.|+       
T Consensus       321 ~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~--~~~l~~L~-------  389 (530)
T 1wa5_B          321 RAVGNIVTGNDLQTQVVINA--GVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID--ANLIPPLV-------  389 (530)
T ss_dssp             HHHHHHTTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHH-------
T ss_pred             HHHHHHHcCCHHHHHHHHHc--chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHH-------
Confidence            899999864 6666777665  47888888777777778889999999999865555323332  34445442       


Q ss_pred             CCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcC--H--hHHHHHHhCCcchhccc
Q 048744          239 VYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQ--E--AGLRAFWSVNGPRLVHG  300 (312)
Q Consensus       239 e~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t--~--~gR~~lr~~~vy~vlr~  300 (312)
                                    +. +..     +++.+|...+.+|-.||..  .  ...+++.+.|+.+.|-.
T Consensus       390 --------------~l-L~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~  435 (530)
T 1wa5_B          390 --------------KL-LEV-----AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD  435 (530)
T ss_dssp             --------------HH-HHH-----SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHH
T ss_pred             --------------HH-Hhc-----CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHH
Confidence                          21 211     2789999999999999863  3  45566667676664433

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.23  E-value=2.2e-10  Score=116.22  Aligned_cols=210  Identities=17%  Similarity=0.139  Sum_probs=162.4

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCCChhHHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      .++.|+++|+++++.||..|+..|..++...+++..++... ++++.|+.++...  ..+...|+.+|.|||.++..+..
T Consensus        15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~-~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~   93 (644)
T 2z6h_A           15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP-QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA   93 (644)
T ss_dssp             THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhcc-ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence            48899999999999999999999999998888877776543 6899999998653  67889999999999999989999


Q ss_pred             hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHH-HhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchh-hHH
Q 048744           82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISS-LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFE-HVG  159 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~-ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~-~la  159 (312)
                      +.+.|.|+.++..+.++++.....++..|.||+........ +.+.      | .++.|++++..+..     ... ..+
T Consensus        94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~------g-~i~~Lv~lL~~~~~-----~~~~~a~  161 (644)
T 2z6h_A           94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA------G-GLQKMVALLNKTNV-----KFLAITT  161 (644)
T ss_dssp             HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHT------T-HHHHHHHGGGCCCH-----HHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHC------C-ChHHHHHHHCcCCH-----HHHHHHH
Confidence            99999999999999998888889999999999987543333 3232      1 37788888866521     222 234


Q ss_pred             HHHHhhcC-ChhhhhhhcccccchhhhhhhcccC-CchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhh
Q 048744          160 SILVNISK-KEAGRKILLDPKRGLLKQIVRQFDS-SNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALL  231 (312)
Q Consensus       160 ~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~-~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lL  231 (312)
                      .+|.|++. .+++|..+.+.+  .+..|+..+.+ .....++.++.+++|+|++..... .++.  ...+|.|+
T Consensus       162 ~~L~~La~~~~~~~~~i~~~g--~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~-~l~~--~g~l~~L~  230 (644)
T 2z6h_A          162 DCLQILAYGNQESKLIILASG--GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVE--AGGMQALG  230 (644)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT--HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHH-HHHH--TTHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHcC--ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHH-HHHH--CCCHHHHH
Confidence            58999996 899999998764  56666665543 345677899999999999766652 4443  24555543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.18  E-value=7.7e-10  Score=95.29  Aligned_cols=194  Identities=16%  Similarity=0.189  Sum_probs=146.6

Q ss_pred             chHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc-cchHH
Q 048744           46 IALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD-YGISS  122 (312)
Q Consensus        46 ~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~-~~~~~  122 (312)
                      +..+.|+.++.+. ..+...|+.+|-|++ .++.....+.+.|+|+.++..+.++++.....++..|.|++..+ .....
T Consensus        12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (210)
T 4db6_A           12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (210)
T ss_dssp             -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            5678999999887 889999999999999 57888888999999999999999998889999999999999654 44444


Q ss_pred             HhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcC-ChhhhhhhcccccchhhhhhhcccCCchhhHhhH
Q 048744          123 LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISK-KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGV  201 (312)
Q Consensus       123 ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gv  201 (312)
                      +++.+       .++.|++++..++.    .-....+.++.|++. .++.++.+++.  |.+..|+..+.+++..-|..+
T Consensus        92 i~~~g-------~i~~L~~lL~~~~~----~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a  158 (210)
T 4db6_A           92 VIDAG-------ALPALVQLLSSPNE----QILQEALWALSNIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEA  158 (210)
T ss_dssp             HHHTT-------CHHHHHHHTTCSCH----HHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHCC-------CHHHHHHHHcCCcH----HHHHHHHHHHHHHHcCCHHHHHHHHHc--CcHHHHHHHHcCCCHHHHHHH
Confidence            44422       37888888866632    124567899999995 55666677765  478888888787888889999


Q ss_pred             HHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc
Q 048744          202 SGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL  281 (312)
Q Consensus       202 a~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~  281 (312)
                      +.+|.|+|...+... ..+. +...+|.|.                     ++ +.   .  +++.+|...+.+|-.||+
T Consensus       159 ~~aL~~l~~~~~~~~-~~~~-~~g~i~~L~---------------------~l-l~---~--~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          159 LWALSNIASGGNEQK-QAVK-EAGALEKLE---------------------QL-QS---H--ENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHTSCHHHH-HHHH-HTTHHHHHH---------------------HG-GG---C--SCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCcHHH-HHHH-HCCCHHHHH---------------------HH-Hh---C--CCHHHHHHHHHHHHHHhc
Confidence            999999999855553 2222 123444432                     21 21   1  289999999999999875

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.15  E-value=6.2e-10  Score=116.04  Aligned_cols=214  Identities=16%  Similarity=0.145  Sum_probs=162.4

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhcc--CccchhhHHHHHHhcCCChhHHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSE--NKEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d--~~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      .++.|+.+|+++++.||..|+..|..++...+++..+...+ ++++.|+.++..  ...+...|+.+|-|||.++.....
T Consensus       151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~-~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~  229 (780)
T 2z6g_A          151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP-QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA  229 (780)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhcc-ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence            57899999999999999999999999998877777776543 689999998864  367899999999999999888888


Q ss_pred             hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHh-hhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH
Q 048744           82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLL-QVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS  160 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll-~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~  160 (312)
                      +++.|+|+.++..+.++++.....|+..|.||+.........+ +.      | .+..|++++..+..    .-....+.
T Consensus       230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~------g-~v~~Lv~lL~~~~~----~v~~~a~~  298 (780)
T 2z6g_A          230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLA------G-GLQKMVALLNKTNV----KFLAITTD  298 (780)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHT------T-HHHHHHHGGGCCCH----HHHHHHHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHc------C-CHHHHHHHHhcCCH----HHHHHHHH
Confidence            8888999999999999888888999999999998754444333 22      1 37788888865321    11334567


Q ss_pred             HHHhhcC-ChhhhhhhcccccchhhhhhhcccC-CchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcc
Q 048744          161 ILVNISK-KEAGRKILLDPKRGLLKQIVRQFDS-SNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPV  234 (312)
Q Consensus       161 vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~-~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPl  234 (312)
                      ++.|++. .+++|..+.+.+  .+..|+..+.. ....++..++++++|+|.+.... ..++.  ...+|.|+--+
T Consensus       299 aL~~La~~~~e~~~~i~~~~--~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~-~~i~~--~g~l~~Ll~lL  369 (780)
T 2z6g_A          299 CLQILAYGNQESKLIILASG--GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVE--AGGMQALGLHL  369 (780)
T ss_dssp             HHHHHHTTCHHHHHHHHTTT--HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHH-HHHHH--TTHHHHHGGGT
T ss_pred             HHHHHhcCChHHHHHHHHcC--CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHH-HHHHH--hchHHHHHHHH
Confidence            8889885 689999998764  45555554443 45567788999999999876554 23433  24556554433

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.06  E-value=8.3e-10  Score=102.87  Aligned_cols=194  Identities=14%  Similarity=0.230  Sum_probs=154.8

Q ss_pred             chHHHHHhccCCCCH------------HHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHH-hhccC-ccchhhHHHH
Q 048744            3 NELEELLGFLCSPSP------------SVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLAR-LLSEN-KEVSEPATEA   68 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~------------~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~-L~~d~-~~~~~~Al~~   68 (312)
                      +.+++.++.|.++.|            +-|..|++.|..+..+.++...+.+.  +.++.|+. ++..+ +.+...|+.+
T Consensus        28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~--G~l~~Lv~~lL~s~~~~vr~~Aa~~  105 (296)
T 1xqr_A           28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQL--SGMHLLVGRYLEAGAAGLRWRAAQL  105 (296)
T ss_dssp             HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHT--THHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHc--CCHHHHHHHHHcCCCHHHHHHHHHH
Confidence            458899999998632            57999999999999987777766654  57899999 98887 8899999999


Q ss_pred             HHhcCCC-hhHHHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcCCccc-hHHHhhhhhhhhhhhhHHHHHHHHhc
Q 048744           69 LVNLSQN-SELAGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQLDYG-ISSLLQVEDEQIQGLYVMKLVRSFCR  145 (312)
Q Consensus        69 LiNLS~d-~~~~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~~~~~-~~~ll~~~~e~~~~~~l~~Ll~~f~~  145 (312)
                      |-|++++ +..+..+++.|+++.|+..+.+ ++......|+-.|||+++.... ...+.+.+       .++.|+.++..
T Consensus       106 Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~g-------gi~~L~~lL~~  178 (296)
T 1xqr_A          106 IGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLD-------GFSVLMRAMQQ  178 (296)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-------HHHHHHHHHHS
T ss_pred             HHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC-------CHHHHHHHHcC
Confidence            9999865 7788889989999999999984 5667888999999999987643 34454421       37788888876


Q ss_pred             CCCCCCCCchhhHHHHHHhhcC-ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhcc
Q 048744          146 SSSEASDDPFEHVGSILVNISK-KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFE  211 (312)
Q Consensus       146 ~~~~~~~~~~~~la~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~  211 (312)
                      ++..    -....+.+++|++. .++.++.+++.  |.++.|+..+.+++..-|.-++.+|.|++-+
T Consensus       179 ~d~~----v~~~A~~aLs~L~~~~~~~~~~vv~~--g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          179 QVQK----LKVKSAFLLQNLLVGHPEHKGTLCSM--GMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             SCHH----HHHHHHHHHHHHHHHCGGGHHHHHHT--THHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             CCHH----HHHHHHHHHHHHHhCChHHHHHHHHc--CCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            5322    23457889999865 47788888876  4788888877877888899999999999976

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.89  E-value=1.2e-08  Score=91.93  Aligned_cols=205  Identities=15%  Similarity=0.145  Sum_probs=143.4

Q ss_pred             chHHHHHHhhccC-c--cchhhHHHHHHhcC-CChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC-Cccch
Q 048744           46 IALPSLARLLSEN-K--EVSEPATEALVNLS-QNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ-LDYGI  120 (312)
Q Consensus        46 ~~i~~L~~L~~d~-~--~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~-~~~~~  120 (312)
                      -.++.|+.++..+ .  .....|..+|-||+ .++..+..+.+.|.|+.|+..+.+++......|+..|.||+. ++++.
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            3588999998776 5  66778999999999 578889999999999999999999888899999999999998 46666


Q ss_pred             HHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhhhhcccccchhhh-h-hhcc--------
Q 048744          121 SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQ-I-VRQF--------  190 (312)
Q Consensus       121 ~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~-l-l~~~--------  190 (312)
                      ..+.+.+       .++.|++++..+.+   .......+.+|.|||..+++|..+.+..-..+-. + .|..        
T Consensus        88 ~~I~~~G-------aI~~Lv~lL~~~~~---~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~  157 (233)
T 3tt9_A           88 LEVAELN-------GVPRLLQVLKQTRD---LETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYP  157 (233)
T ss_dssp             HHHHHTT-------HHHHHHHHHHHCCC---HHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCC
T ss_pred             HHHHHcC-------CHHHHHHHHccCCC---HHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccc
Confidence            6666543       48899999975321   1234567889999999999999888643112222 2 1221        


Q ss_pred             ---cCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChH
Q 048744          191 ---DSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPE  267 (312)
Q Consensus       191 ---~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~  267 (312)
                         .+.+..-++.++++|||++...+... ..+-....+.+.|+.++-+.                  ..+ .+  .|..
T Consensus       158 ~~~~~~~~~v~~na~~~L~nLss~~~~~R-~~~r~~~Gli~~Lv~~l~~~------------------~~~-~~--~~~k  215 (233)
T 3tt9_A          158 KANGLLDFDIFYNVTGCLRNMSSAGADGR-KAMRRCDGLIDSLVHYVRGT------------------IAD-YQ--PDDK  215 (233)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTTSCHHHH-HHHHTSTTHHHHHHHHHHHH------------------HHT-TC--TTCH
T ss_pred             cccccchHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCCcHHHHHHHHHhh------------------hhc-cc--chhH
Confidence               11245678899999999998654443 44544444555554433321                  111 11  2566


Q ss_pred             HHHHHHHHHHHHhcC
Q 048744          268 IRIQALESIYLITLQ  282 (312)
Q Consensus       268 Ir~~llE~Ll~L~~t  282 (312)
                      .+...+-+|..||-.
T Consensus       216 ~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          216 ATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            677788888888753

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.85  E-value=6.4e-08  Score=90.08  Aligned_cols=159  Identities=18%  Similarity=0.147  Sum_probs=124.0

Q ss_pred             hHHHHHh-ccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhcc-C-ccchhhHHHHHHhcCC-ChhH
Q 048744            4 ELEELLG-FLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSE-N-KEVSEPATEALVNLSQ-NSEL   78 (312)
Q Consensus         4 ~l~ELv~-FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d-~-~~~~~~Al~~LiNLS~-d~~~   78 (312)
                      .++.|++ +|++++++||..|+..|-.++++ +..++.+.+.  ++++.|+.++.. . ..+.+.|+.+|-|++. ++..
T Consensus        82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~--g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~  159 (296)
T 1xqr_A           82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL--GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAG  159 (296)
T ss_dssp             HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC--CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHH
Confidence            4678999 99999999999999999998776 5566666654  689999999974 3 6789999999999986 4666


Q ss_pred             HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc-cchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744           79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD-YGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH  157 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~-~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~  157 (312)
                      .+.+.+.|.++.|+..+.+++......+|.+|+||+..+ +.+..+.+.+       .+..|++++..++.    .-...
T Consensus       160 ~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g-------~i~~Lv~LL~~~d~----~v~~~  228 (296)
T 1xqr_A          160 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG-------MVQQLVALVRTEHS----PFHEH  228 (296)
T ss_dssp             HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT-------HHHHHHHHHTSCCS----THHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC-------CHHHHHHHHcCCCh----hHHHH
Confidence            677777899999999999998889999999999998764 3344444432       47899998876632    23466


Q ss_pred             HHHHHHhhcCC-hhhhhhh
Q 048744          158 VGSILVNISKK-EAGRKIL  175 (312)
Q Consensus       158 la~vl~NlS~~-~~gR~~~  175 (312)
                      .+..+.|+.+. +..+..+
T Consensus       229 al~aL~~l~~~~~~~~~~~  247 (296)
T 1xqr_A          229 VLGALCSLVTDFPQGVREC  247 (296)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCChhHHHHH
Confidence            78889998776 4444433

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.74  E-value=1.7e-08  Score=104.76  Aligned_cols=205  Identities=19%  Similarity=0.204  Sum_probs=143.3

Q ss_pred             hHHHHHhccCCCCHH---HHHHHHHHHHhcCCCccchhhhhh-cc-cchHHHHHHhhccC--ccc-------------hh
Q 048744            4 ELEELLGFLCSPSPS---VKKAAVDIVRGLTGSEDGLQSLSK-YS-KIALPSLARLLSEN--KEV-------------SE   63 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~---vR~~Al~~llgls~~~~~~~~i~~-~~-~~~i~~L~~L~~d~--~~~-------------~~   63 (312)
                      .++-|+++|.+....   +|..|+..|..++.+.++.. +|. .. -++|+.|+.|++.+  ...             ..
T Consensus       499 al~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~f  577 (778)
T 3opb_A          499 AVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNY  577 (778)
T ss_dssp             HHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHH
T ss_pred             CHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHH
Confidence            478899999976544   89999999998886655443 342 11 26899999999832  211             56


Q ss_pred             hHHHHHHhcCCCh-----hHHHHhhhh-hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccch-HHHhhhhhhhhhhhhH
Q 048744           64 PATEALVNLSQNS-----ELAGKMVQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI-SSLLQVEDEQIQGLYV  136 (312)
Q Consensus        64 ~Al~~LiNLS~d~-----~~~~~l~~~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~-~~ll~~~~e~~~~~~l  136 (312)
                      .|+.||.||+..+     +++..|++. |+++.+.+++.+++......|+.+++||+.+++++ .++++.......+ .+
T Consensus       578 eAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~-rL  656 (778)
T 3opb_A          578 EALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR-NF  656 (778)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH-HH
T ss_pred             HHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc-cH
Confidence            9999999999764     578889985 99999999999988888899999999999998875 4666543211111 26


Q ss_pred             HHHHHHHhcCCCCCCCCchhhHHHHHHhhc-CChhhhhhhcccccchhhhhhhcccC--CchhhHhhHHHHHHhhh-ccc
Q 048744          137 MKLVRSFCRSSSEASDDPFEHVGSILVNIS-KKEAGRKILLDPKRGLLKQIVRQFDS--SNYLRKKGVSGTIRNCC-FEA  212 (312)
Q Consensus       137 ~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS-~~~~gR~~~l~~~~~~l~~ll~~~~~--~s~iRR~gva~~ikNcc-F~~  212 (312)
                      ..|+.+.-.++.+    .-...+.+|+|+| ..|...+.+++..+ .++.++..++.  ++.--|.-++-++.|.. ...
T Consensus       657 ~lLV~Ll~s~D~~----~r~AAagALAnLts~~~~ia~~ll~~~~-gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~  731 (778)
T 3opb_A          657 NILVKLLQLSDVE----SQRAVAAIFANIATTIPLIAKELLTKKE-LIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP  731 (778)
T ss_dssp             HHHHHGGGCSCHH----HHHHHHHHHHHHHHHCHHHHHHHTTCHH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCCHH----HHHHHHHHHHHhcCCChHHHHHHHHccc-cHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence            6777777443322    2345789999995 79999999988743 45555554332  45555555666788887 443


Q ss_pred             hhh
Q 048744          213 EHQ  215 (312)
Q Consensus       213 ~~H  215 (312)
                      ..+
T Consensus       732 ~~~  734 (778)
T 3opb_A          732 DNG  734 (778)
T ss_dssp             STT
T ss_pred             cCC
Confidence            333

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.72  E-value=1.6e-07  Score=97.37  Aligned_cols=192  Identities=15%  Similarity=0.144  Sum_probs=140.4

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-cc---chhhHHHHHHhcC--CChh
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KE---VSEPATEALVNLS--QNSE   77 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~---~~~~Al~~LiNLS--~d~~   77 (312)
                      .++-|+..++++.+.+|..|+..|..+|..+++|..+.+.  ++++.|+.++..+ ..   ....|+.+|-|++  .+|.
T Consensus       458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqq--Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~  535 (778)
T 3opb_A          458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQ--GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG  535 (778)
T ss_dssp             HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHT--THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence            4778999999999999999999999999999999998875  7899999998777 33   5779999999996  4555


Q ss_pred             HHHHhh--h-hhHHHHHHHHHcC-CCCh------------h-HHHHHHHHHhhcCCcc-----chHHHhhhhhhhhhhhh
Q 048744           78 LAGKMV--Q-MGMIKTAMDLLYK-PDSS------------I-TRLLVMLLVNLTQLDY-----GISSLLQVEDEQIQGLY  135 (312)
Q Consensus        78 ~~~~l~--~-~~~i~~lv~~i~~-~~~~------------~-ad~a~mLLsNLT~~~~-----~~~~ll~~~~e~~~~~~  135 (312)
                      ..  +.  . .+.|+.|+..+.. +...            . .-.|.|.|.||+..+.     .+.+++..     .| +
T Consensus       536 ~~--f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-----~g-a  607 (778)
T 3opb_A          536 LI--FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-----KV-Y  607 (778)
T ss_dssp             HH--SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-----HH-H
T ss_pred             HH--cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-----cC-H
Confidence            42  21  1 2899999999872 3321            1 3378999999998862     23445442     12 4


Q ss_pred             HHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhh--hhhccccc---chhhhhhhcccCCchhhHhhHHHHHHhhh
Q 048744          136 VMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGR--KILLDPKR---GLLKQIVRQFDSSNYLRKKGVSGTIRNCC  209 (312)
Q Consensus       136 l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR--~~~l~~~~---~~l~~ll~~~~~~s~iRR~gva~~ikNcc  209 (312)
                      +..|.+++..+...    -....+-+++|++..|+++  +++-..+.   +-++.|+-...+.+.-=|+.++++|.|++
T Consensus       608 ~~~L~~LL~s~n~~----VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt  682 (778)
T 3opb_A          608 WSTIENLMLDENVP----LQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA  682 (778)
T ss_dssp             HHHHHHGGGCSSHH----HHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHH----HHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            67787777654211    1234678999999999997  44433221   23667777667778888888999999996

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.17  E-value=2.4e-06  Score=87.74  Aligned_cols=197  Identities=15%  Similarity=0.161  Sum_probs=133.6

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHH-HHHhhccC-ccchhhHHHHHHhcCCC--hhH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPS-LARLLSEN-KEVSEPATEALVNLSQN--SEL   78 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~-L~~L~~d~-~~~~~~Al~~LiNLS~d--~~~   78 (312)
                      +++..+++-|+++.++.|..|+..|..+..+++.+..+.+.  +.|.. |-.++.|. ..++..|+.+|-||+.+  ..+
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~--~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLRE--QVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHT--THHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHc--CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            35678999999999999999999999999888877776654  45554 56678887 88999999999999965  688


Q ss_pred             HHHhhhhhHHHHHHHHHcCC-------C--------------ChhHHHHHHHHHhhcCCcc-chHHHhhhhhhhhhhhhH
Q 048744           79 AGKMVQMGMIKTAMDLLYKP-------D--------------SSITRLLVMLLVNLTQLDY-GISSLLQVEDEQIQGLYV  136 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~~~-------~--------------~~~ad~a~mLLsNLT~~~~-~~~~ll~~~~e~~~~~~l  136 (312)
                      +..+.+.|++..+...+...       .              +..++.++.+|.||+-... ....+.+.     .  .+
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~-----~--~l  184 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK-----Q--TI  184 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC-----H--HH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc-----c--cH
Confidence            99999988888777765320       0              1245567788888874432 22233221     1  37


Q ss_pred             HHHHHHHhcCCCCCCCCchhhHHHHHHhhcCC-hhhhhhhcccccc-hhhhhhhcccCCchhhHhhHHHHHHhhhc
Q 048744          137 MKLVRSFCRSSSEASDDPFEHVGSILVNISKK-EAGRKILLDPKRG-LLKQIVRQFDSSNYLRKKGVSGTIRNCCF  210 (312)
Q Consensus       137 ~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~-~~gR~~~l~~~~~-~l~~ll~~~~~~s~iRR~gva~~ikNccF  210 (312)
                      ..|+..+......+. .-....+..|.++|.- ++.-+.+.+.+.. ....++.... .+..+|.-+++++.|..+
T Consensus       185 ~~l~~~L~~~~~~~~-~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~  258 (684)
T 4gmo_A          185 LRLLFRLISADIAPQ-DIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT  258 (684)
T ss_dssp             HHHHHHHHHHCCSCH-HHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcH-HHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence            788888766532211 1234466777787763 4555555554332 3344444323 445567889999999876

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.66  E-value=0.00033  Score=59.93  Aligned_cols=103  Identities=17%  Similarity=0.196  Sum_probs=76.5

Q ss_pred             cchHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHH
Q 048744            2 ANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAG   80 (312)
Q Consensus         2 ~~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~   80 (312)
                      +..++.|+..|+++++.+|..|+..|..+..            +..++.|+.++.+. ..+...|+.+|-++..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            3568999999999999999999999876532            14677888888887 7788888888887753      


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhh
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVE  127 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~  127 (312)
                          .+.++.++..+.++++.....++..|.++...+ .+..+....
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l  121 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-AVEPLIKAL  121 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHT
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-HHHHHHHHH
Confidence                246677777788877777778888888876432 344444433

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=97.54  E-value=0.00012  Score=74.40  Aligned_cols=122  Identities=16%  Similarity=0.213  Sum_probs=99.0

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCcc--chhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSED--GLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELA   79 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~--~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~   79 (312)
                      +.+.-|+++|.+....+|-.|++.|..+..+.+  .++.|...+ ..|+.|+.+++|. ..++..|+..|.+|+.+....
T Consensus       122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p-~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i  200 (651)
T 3grl_A          122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSP-MGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI  200 (651)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHST-THHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCc-ccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence            447789999999999999999999988876633  466677654 6799999999998 788899999999999776556


Q ss_pred             HHhhhh-hHHHHHHHHHcCCCC----hhHHHHHHHHHhhcCCccchHHHhh
Q 048744           80 GKMVQM-GMIKTAMDLLYKPDS----SITRLLVMLLVNLTQLDYGISSLLQ  125 (312)
Q Consensus        80 ~~l~~~-~~i~~lv~~i~~~~~----~~ad~a~mLLsNLT~~~~~~~~ll~  125 (312)
                      .+|+.. |+++++++.|..+..    .....|..+|.||.+....-..++.
T Consensus       201 QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr  251 (651)
T 3grl_A          201 QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK  251 (651)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence            666655 999999999987654    6888999999999998743334443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.34  E-value=0.017  Score=48.68  Aligned_cols=152  Identities=13%  Similarity=0.136  Sum_probs=104.6

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      ...+.+++.|+++++.+|..|+..|..+..            +..++.|+.++.+. ..+...|+.+|-++..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            346889999999999999999999876531            14578888888887 7889999999987753       


Q ss_pred             hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHH
Q 048744           82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSI  161 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~v  161 (312)
                         .+.++.++..+.++++.....++..|.++...+                 .+..|+.++...+..    --...+..
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-----------------~~~~L~~~l~d~~~~----vr~~a~~a  130 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-----------------AVEPLIKALKDEDWF----VRIAAAFA  130 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-----------------GHHHHHHHTTCSSHH----HHHHHHHH
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-----------------HHHHHHHHHcCCCHH----HHHHHHHH
Confidence               256778888888988888888888888875321                 234455544222100    01234455


Q ss_pred             HHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhh
Q 048744          162 LVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCC  209 (312)
Q Consensus       162 l~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNcc  209 (312)
                      +.++..            ...+..|+..+.+++..-|..++.++.+..
T Consensus       131 L~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~  166 (201)
T 3ltj_A          131 LGEIGD------------ERAVEPLIKALKDEDGWVRQSAADALGEIG  166 (201)
T ss_dssp             HHHHTC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHhCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            555532            124555666666677777888888888773

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.32  E-value=0.0052  Score=63.65  Aligned_cols=195  Identities=15%  Similarity=0.130  Sum_probs=117.0

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHHHh
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAGKM   82 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~~l   82 (312)
                      ++.+++++++++++||..|+..+..+.....+  .+...-+.+++.|..++.++ ..+++.|+.+|.++... +.....-
T Consensus       176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~--~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~  253 (852)
T 4fdd_A          176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ--ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH  253 (852)
T ss_dssp             HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH--HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            45677888999999999999999887654322  12222235889999998887 78999999999999753 2221111


Q ss_pred             hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHh---------cCC---CCC
Q 048744           83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFC---------RSS---SEA  150 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~---------~~~---~~~  150 (312)
                      + .++++.++..+.++++..+..++..+.+++.... +...+.   ..... .++.|+..+.         +++   +..
T Consensus       254 l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~~~~---~~~~~-l~p~ll~~l~~~e~d~~~~~~d~~ed~~  327 (852)
T 4fdd_A          254 M-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLV---RHLPK-LIPVLVNGMKYSDIDIILLKGDVEGGSG  327 (852)
T ss_dssp             H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHHHHT---TTHHH-HHHHHHHHTSCCHHHHHHHHC-------
T ss_pred             H-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHHHHH---HHHHH-HHHHHHHHcCCcHhHHHHhcCCcccccc
Confidence            1 2578888888888888888899999999987652 222221   10011 1333434332         121   000


Q ss_pred             -----CCCc-hhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccc
Q 048744          151 -----SDDP-FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEA  212 (312)
Q Consensus       151 -----~~~~-~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~  212 (312)
                           ..-. ..-.+..+..++... | ..++.   .++..+...+.+++...|.+++.++-+++-..
T Consensus       328 ~dd~~~~~~vr~~a~~~L~~la~~~-~-~~~~~---~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~  390 (852)
T 4fdd_A          328 GDDTISDWNLRKCSAAALDVLANVY-R-DELLP---HILPLLKELLFHHEWVVKESGILVLGAIAEGC  390 (852)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHH-G-GGGHH---HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT
T ss_pred             cccccccchHHHHHHHHHHHHHHhc-c-HHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence                 0001 112334444444322 1 22222   13344444456678888999999999988543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=97.29  E-value=0.0014  Score=66.70  Aligned_cols=197  Identities=17%  Similarity=0.190  Sum_probs=136.4

Q ss_pred             hHHHHHhccCC--CCHHHHHHHHHHHHhcCCC-ccc-----------------hhhhhhcccchHHHHHHhhccC-ccch
Q 048744            4 ELEELLGFLCS--PSPSVKKAAVDIVRGLTGS-EDG-----------------LQSLSKYSKIALPSLARLLSEN-KEVS   62 (312)
Q Consensus         4 ~l~ELv~FL~~--~~~~vR~~Al~~llgls~~-~~~-----------------~~~i~~~~~~~i~~L~~L~~d~-~~~~   62 (312)
                      .++-|++-|+.  .+.|+=+.+++.|+.+... ++.                 -+.+.+.. +.|..|+.++... -.+.
T Consensus        61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~-~~i~~Ll~lL~~~df~vR  139 (651)
T 3grl_A           61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQ-ENVTLLLSLLEEFDFHVR  139 (651)
T ss_dssp             THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHST-HHHHHHHHHTTCCCHHHH
T ss_pred             hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCC-ccHHHHHHHhcCccHHHH
Confidence            47789999984  4788888999999775433 221                 01222333 5688999999777 7888


Q ss_pred             hhHHHHHHhcCC-Chh-HHHHhhhh-hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHH
Q 048744           63 EPATEALVNLSQ-NSE-LAGKMVQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKL  139 (312)
Q Consensus        63 ~~Al~~LiNLS~-d~~-~~~~l~~~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~L  139 (312)
                      -.|+.+|-.|+. .+. +.+.++.. +.|..+|+.+.|+.....+.+..+|++||+....+.+++...     | .+.+|
T Consensus       140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFE-----n-aFe~L  213 (651)
T 3grl_A          140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFE-----N-AFERL  213 (651)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----T-HHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHh-----c-cHHHH
Confidence            899999999984 454 88888876 999999999999999999999999999999998887776642     2 47788


Q ss_pred             HHHHhcCCCCCCCCc--hhhHHHHHHhhcCCh-hhhhhhcccccchhhhhhhcccCC------chhhHh---hHHHHHHh
Q 048744          140 VRSFCRSSSEASDDP--FEHVGSILVNISKKE-AGRKILLDPKRGLLKQIVRQFDSS------NYLRKK---GVSGTIRN  207 (312)
Q Consensus       140 l~~f~~~~~~~~~~~--~~~la~vl~NlS~~~-~gR~~~l~~~~~~l~~ll~~~~~~------s~iRR~---gva~~ikN  207 (312)
                      ++.+..... .+++.  -|-+ .++.||-+.- ....+|.+.+  .+++|.+.++.+      +.-|-.   |+..+||=
T Consensus       214 f~Ii~~Eg~-~~Ggivv~DCL-~ll~nLLr~N~sNQ~~FrEt~--~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrl  289 (651)
T 3grl_A          214 LDIITEEGN-SDGGIVVEDCL-ILLQNLLKNNNSNQNFFKEGS--YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRV  289 (651)
T ss_dssp             HHHHHHHTG-GGSHHHHHHHH-HHHHHHHTTCHHHHHHHHHTT--CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC-CccchhHHHHH-HHHHHHHhcCHHHHHHHHHcC--CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHH
Confidence            888866432 11111  1333 7788877654 4777777654  566666644322      211322   35666666


Q ss_pred             hhcc
Q 048744          208 CCFE  211 (312)
Q Consensus       208 ccF~  211 (312)
                      .|-.
T Consensus       290 Lv~~  293 (651)
T 3grl_A          290 LVSP  293 (651)
T ss_dssp             HTCT
T ss_pred             HhCC
Confidence            6654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=96.79  E-value=0.0077  Score=50.77  Aligned_cols=91  Identities=19%  Similarity=0.206  Sum_probs=74.0

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      ..++.|+++|.++++.||..|+..|..+. .           +..++.|+.++.+. +.+...|+.+|-++..       
T Consensus        45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------  105 (201)
T 3ltj_A           45 RAVEPLIKALKDEDAWVRRAAADALGQIG-D-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------  105 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHhhC-C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------
Confidence            46889999999999999999999886552 1           14678888888888 7899999999988754       


Q ss_pred             hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744           82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ  115 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~  115 (312)
                         .++++.++..+.++++.....++..|.++..
T Consensus       106 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~  136 (201)
T 3ltj_A          106 ---ERAVEPLIKALKDEDWFVRIAAAFALGEIGD  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence               2467778888888888888889999998853

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=96.69  E-value=0.18  Score=44.44  Aligned_cols=94  Identities=9%  Similarity=0.038  Sum_probs=70.0

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      .++.|+..|.++++.+|..|+..|..+..            +..++.|+.++.+. +.+...|+.+|-++...+....  
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~--   89 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED--   89 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch--
Confidence            47899999999999999999999876641            14678888888888 7889999999999875433211  


Q ss_pred             hhhhHHHHHHH-HHcCCCChhHHHHHHHHHhhc
Q 048744           83 VQMGMIKTAMD-LLYKPDSSITRLLVMLLVNLT  114 (312)
Q Consensus        83 ~~~~~i~~lv~-~i~~~~~~~ad~a~mLLsNLT  114 (312)
                         ..++.+.+ ...++++.....++..|.++.
T Consensus        90 ---~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~  119 (280)
T 1oyz_A           90 ---NVFNILNNMALNDKSACVRATAIESTAQRC  119 (280)
T ss_dssp             ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence               23344443 345677777777888888875

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=96.67  E-value=0.017  Score=57.69  Aligned_cols=174  Identities=14%  Similarity=0.236  Sum_probs=105.3

Q ss_pred             HHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHHHhhh
Q 048744            7 ELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAGKMVQ   84 (312)
Q Consensus         7 ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~~l~~   84 (312)
                      .+..-|.++|+.+|..|+..+..+. +++    +..   .+++.+++++.|. +.+++.|+.||.++.. +++..   -+
T Consensus        90 ~l~kdL~~~n~~ir~~AL~~L~~i~-~~~----~~~---~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~  158 (591)
T 2vgl_B           90 SFVKDCEDPNPLIRALAVRTMGCIR-VDK----ITE---YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---ED  158 (591)
T ss_dssp             HHGGGSSSSSHHHHHHHHHHHHTCC-SGG----GHH---HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHcCC-hHH----HHH---HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---cc
Confidence            3455577888888888888887764 221    221   4677888888888 8899999999999864 34322   12


Q ss_pred             hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCch--hhHHHHH
Q 048744           85 MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPF--EHVGSIL  162 (312)
Q Consensus        85 ~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~--~~la~vl  162 (312)
                      .++++.+...+.|+++.....|.++|.++........ .+....    + .+.+|+..+...+      ++  -++..++
T Consensus       159 ~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~-~~~l~~----~-~~~~Ll~~l~~~~------~~~q~~il~~l  226 (591)
T 2vgl_B          159 QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN-LLDLNP----Q-NINKLLTALNECT------EWGQIFILDCL  226 (591)
T ss_dssp             HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC-SCCCHH----H-HHHHHHHHHHHCC------HHHHHHHHHHH
T ss_pred             ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc-chhccH----H-HHHHHHHcCCCCC------chHHHHHHHHH
Confidence            3788999999998888888889999999987664220 111100    0 2344444443321      11  1122333


Q ss_pred             HhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhh
Q 048744          163 VNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCC  209 (312)
Q Consensus       163 ~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNcc  209 (312)
                      +++..... +.     ...++..+++.+.+.+..-+-.++.+|-++.
T Consensus       227 ~~l~~~~~-~~-----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~  267 (591)
T 2vgl_B          227 SNYNPKDD-RE-----AQSICERVTPRLSHANSAVVLSAVKVLMKFL  267 (591)
T ss_dssp             HTSCCCSH-HH-----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred             HHhCCCCh-HH-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence            33321110 00     0125566666667766666777788887765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=96.58  E-value=0.0062  Score=61.42  Aligned_cols=99  Identities=14%  Similarity=0.171  Sum_probs=72.7

Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHHHhh
Q 048744            6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAGKMV   83 (312)
Q Consensus         6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~~l~   83 (312)
                      .-+..-|.++|+-+|..|+..+..+.. ++    +..   .+++.+.+++.+. +.+++.|+.||.++.. +++..+   
T Consensus       110 n~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~~---~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~---  178 (618)
T 1w63_A          110 NCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MCR---DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME---  178 (618)
T ss_dssp             HHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HHH---HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG---
T ss_pred             HHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH---
Confidence            345667788899999999998888752 21    221   4678888888888 8899999999999974 443222   


Q ss_pred             hhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744           84 QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD  117 (312)
Q Consensus        84 ~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~  117 (312)
                        ++++.+.+.+.|+++...-.|+.+|.-+...+
T Consensus       179 --~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~  210 (618)
T 1w63_A          179 --MFLPATKNLLNEKNHGVLHTSVVLLTEMCERS  210 (618)
T ss_dssp             --GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred             --HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence              56666777777777777777888888887665

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=96.48  E-value=0.0094  Score=47.36  Aligned_cols=89  Identities=12%  Similarity=0.081  Sum_probs=49.7

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      .++.|+.+|+++++.||..|+..|..+..             ..++.|+.++.|. +.++..|+.+|-++..        
T Consensus        13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A           13 GLVPRGSHMADENKWVRRDVSTALSRMGD-------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             --------CCSSCCCSSSSCCSSTTSCSS-------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhCc-------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence            35567777777777777777665543310             1135666666665 6677777777776653        


Q ss_pred             hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744           83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ  115 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~  115 (312)
                        ...++.++..+.|+++.....++..|.++..
T Consensus        72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~  102 (131)
T 1te4_A           72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG  102 (131)
T ss_dssp             --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence              1345556666666666666667777777763

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=96.46  E-value=0.011  Score=50.29  Aligned_cols=102  Identities=15%  Similarity=0.127  Sum_probs=78.9

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      ..++.|+.+|+++++.||..|+..|-.+..            +..++.|+.++.|. +.+...|+.+|-++...      
T Consensus        81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------  142 (211)
T 3ltm_A           81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE------  142 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------
Confidence            457889999999999999999999876631            14678888888888 78999999999888532      


Q ss_pred             hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhh
Q 048744           82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVE  127 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~  127 (312)
                          ..+..+...+.++++.....++..|.++.. +.....+.+..
T Consensus       143 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l  183 (211)
T 3ltm_A          143 ----RAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA  183 (211)
T ss_dssp             ----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence                467778888888888888888999999864 33344454444

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=96.41  E-value=0.027  Score=54.61  Aligned_cols=67  Identities=16%  Similarity=0.265  Sum_probs=43.7

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccc--hhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDG--LQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS   73 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~--~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS   73 (312)
                      ++-+++++++++++||..|+..+-.+...-..  +...+  .+.+++.+..++.|. ..+++.|+.+|-+++
T Consensus       283 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~  352 (588)
T 1b3u_A          283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI--MSQILPCIKELVSDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH--HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            55677888899999999998877665433111  10001  124777888888877 666777776666664

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=96.34  E-value=0.038  Score=57.10  Aligned_cols=188  Identities=14%  Similarity=0.085  Sum_probs=109.0

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      -++.|+.++.+++++||+.|++.+..+......  .+..+-+.+++.+..++.+. ..++..|+..+.+++..+...+.+
T Consensus       216 ~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~--~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~  293 (852)
T 4fdd_A          216 FIENLFALAGDEEPEVRKNVCRALVMLLEVRMD--RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL  293 (852)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH--HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHH
Confidence            356688888899999999999999888654322  12222225778888888887 789999999999999876555433


Q ss_pred             hhh--hHHHHHHHHH-----------cC-----------CCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHH
Q 048744           83 VQM--GMIKTAMDLL-----------YK-----------PDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMK  138 (312)
Q Consensus        83 ~~~--~~i~~lv~~i-----------~~-----------~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~  138 (312)
                      ...  ..++.++..+           .|           ..+.....++..|..|+..-.  ..++.       . .+..
T Consensus       294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~-------~-l~~~  363 (852)
T 4fdd_A          294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP-------H-ILPL  363 (852)
T ss_dssp             TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH-------H-HHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH-------H-HHHH
Confidence            221  4566666665           23           222334445555554443221  11111       0 1233


Q ss_pred             HHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhhhhcccc-cchhhhhhhcccCCchhhHhhHHHHHHhhhc
Q 048744          139 LVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPK-RGLLKQIVRQFDSSNYLRKKGVSGTIRNCCF  210 (312)
Q Consensus       139 Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~~-~~~l~~ll~~~~~~s~iRR~gva~~ikNccF  210 (312)
                      +.+.+......    .-+-.+..|.+++.....   .+.+. ..++..+++.+.++++.-|..++.++-+.|=
T Consensus       364 l~~~l~~~~~~----~R~aa~~alg~i~~~~~~---~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~  429 (852)
T 4fdd_A          364 LKELLFHHEWV----VKESGILVLGAIAEGCMQ---GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH  429 (852)
T ss_dssp             HHHHHTCSSHH----HHHHHHHHHHHTTTTTHH---HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred             HHHHhcCCCHH----HHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            33333222111    112234556666654321   22221 1355666666677888889999999999883

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=96.33  E-value=0.036  Score=51.97  Aligned_cols=241  Identities=11%  Similarity=0.092  Sum_probs=127.3

Q ss_pred             HHHHHhccCCC--CHHHHHHHHHHHHhcCCC-ccchh-hhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhH
Q 048744            5 LEELLGFLCSP--SPSVKKAAVDIVRGLTGS-EDGLQ-SLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SEL   78 (312)
Q Consensus         5 l~ELv~FL~~~--~~~vR~~Al~~llgls~~-~~~~~-~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~   78 (312)
                      ++-++++|.++  +++||..|+..+..+... .++.. ..+.  +.+++.|..++.+. ..+++.|+.+|.++... +..
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~  251 (462)
T 1ibr_B          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY  251 (462)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            45577888876  899999999998775432 11100 0111  12567777777766 77888899999988742 211


Q ss_pred             HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHh---------------hhhhhhhhhhhHHHHHHHH
Q 048744           79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLL---------------QVEDEQIQGLYVMKLVRSF  143 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll---------------~~~~e~~~~~~l~~Ll~~f  143 (312)
                      ....+..++++.++..+.+.++.....++..+++++.........-               ....... ...++.+++.+
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l  330 (462)
T 1ibr_B          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTL  330 (462)
T ss_dssp             CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHH
Confidence            1111111566777777778777778888888888875431110000               0000000 11244555666


Q ss_pred             hcCCCCCCCCc---hhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHh
Q 048744          144 CRSSSEASDDP---FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLL  220 (312)
Q Consensus       144 ~~~~~~~~~~~---~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll  220 (312)
                      ...+.+...+.   -.-.+..|..++..-.  +.++.   .++..+...+.+++...|.+++.+|-++|-.....   -+
T Consensus       331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~~---~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~---~~  402 (462)
T 1ibr_B          331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP---HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS---QL  402 (462)
T ss_dssp             TCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHHH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT---TT
T ss_pred             HhcccccccccchHHHHHHHHHHHHHHhcc--HHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH---HH
Confidence            54322111111   1122333333332211  11221   13344444456678888999999999988532110   00


Q ss_pred             hhc-cChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCH
Q 048744          221 LIS-EFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQE  283 (312)
Q Consensus       221 ~~~-~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~  283 (312)
                      .+. ..++|.+                     ++ .+   +++  ++.||...+.+|-.+|..-
T Consensus       403 ~~~l~~~~~~l---------------------~~-~l---~d~--~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          403 KPLVIQAMPTL---------------------IE-LM---KDP--SVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             CTTTTTHHHHH---------------------HH-GG---GCS--CHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHH---------------------HH-Hh---cCC--CHHHHHHHHHHHHHHHHhc
Confidence            000 1222222                     11 12   122  7999999999999998543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=96.20  E-value=0.12  Score=51.48  Aligned_cols=67  Identities=27%  Similarity=0.254  Sum_probs=52.6

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN   75 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d   75 (312)
                      ++.+...|.+++|.||+.|+..+..+....+.   +... .++++.|..++.|. +.+...|+.+|.+++.+
T Consensus       123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVED-QGFLDSLRDLIADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence            45588999999999999999999876543221   1221 25789999999988 88999999999999865

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=96.11  E-value=0.0063  Score=61.65  Aligned_cols=97  Identities=15%  Similarity=0.260  Sum_probs=72.1

Q ss_pred             HhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhh--ccC-ccchhhHHHHHHhcCC-ChhHHHHhhh
Q 048744            9 LGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL--SEN-KEVSEPATEALVNLSQ-NSELAGKMVQ   84 (312)
Q Consensus         9 v~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~--~d~-~~~~~~Al~~LiNLS~-d~~~~~~l~~   84 (312)
                      ..-|.++|+-+|..|+..+..+.. ++    +..   .+++.+++++  .|. +.++|.|+.|+.++.. +|+    ++.
T Consensus       117 ~kDl~~~n~~ir~lALr~L~~i~~-~e----~~~---~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~----~~~  184 (621)
T 2vgl_A          117 KNDLASRNPTFMGLALHCIANVGS-RE----MAE---AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD----LVP  184 (621)
T ss_dssp             HHHHHSCCHHHHHHHHHHHHHHCC-HH----HHH---HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG----GCC
T ss_pred             HHhcCCCCHHHHHHHHHHhhccCC-HH----HHH---HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh----hcC
Confidence            344567888888888888888742 22    222   4667888888  777 8899999999999874 332    333


Q ss_pred             -hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744           85 -MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD  117 (312)
Q Consensus        85 -~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~  117 (312)
                       .++++.+.+.+.|+++.....|+.+|..+...+
T Consensus       185 ~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~  218 (621)
T 2vgl_A          185 MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN  218 (621)
T ss_dssp             CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence             378899999998888888888888888887644

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=95.74  E-value=0.061  Score=47.58  Aligned_cols=88  Identities=13%  Similarity=0.101  Sum_probs=56.0

Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhhhHHH
Q 048744           11 FLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQMGMIK   89 (312)
Q Consensus        11 FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~   89 (312)
                      +++++++.||..|+..|-.+......    +  .+.+++.|..++.+. +.+...|+.+|-++...          ++++
T Consensus        99 ~~~d~~~~vr~~a~~aL~~l~~~~~~----~--~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~----------~~~~  162 (280)
T 1oyz_A           99 ALNDKSACVRATAIESTAQRCKKNPI----Y--SPKIVEQSQITAFDKSTNVRRATAFAISVINDK----------ATIP  162 (280)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHHHCGG----G--HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHhccCCc----c--cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH----------HHHH
Confidence            56677888888888877666421110    0  114567777777776 67777788888776532          3566


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHhhc
Q 048744           90 TAMDLLYKPDSSITRLLVMLLVNLT  114 (312)
Q Consensus        90 ~lv~~i~~~~~~~ad~a~mLLsNLT  114 (312)
                      .++..+.++++.....++..|.++.
T Consensus       163 ~L~~~l~d~~~~vr~~a~~aL~~~~  187 (280)
T 1oyz_A          163 LLINLLKDPNGDVRNWAAFAININK  187 (280)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhhc
Confidence            6667777776666666777777774

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=95.60  E-value=0.017  Score=50.54  Aligned_cols=183  Identities=9%  Similarity=0.145  Sum_probs=109.0

Q ss_pred             HHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhc-cC-ccchhhHHHHHHhcCCChhHHHHhhh
Q 048744            7 ELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLS-EN-KEVSEPATEALVNLSQNSELAGKMVQ   84 (312)
Q Consensus         7 ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~-d~-~~~~~~Al~~LiNLS~d~~~~~~l~~   84 (312)
                      .+.+.+++.+...|+.|+..|..+....+.  .....-..+++.|..++. |. ..+...|+.+|--|+..  ....+-.
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~--~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~--l~~~~~~   94 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPK--LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG--LAKRFSN   94 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSS--BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--HGGGGHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCC--CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--HhhhHHH
Confidence            477888999999999999999888643111  111111257888888885 77 77888999999888832  1111111


Q ss_pred             --hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHH
Q 048744           85 --MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSIL  162 (312)
Q Consensus        85 --~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl  162 (312)
                        ..+++.+++.+.|++....+.++..|.++...-. ...            .++.|...+.......+.....+++.++
T Consensus        95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~~------------ll~~l~~~l~~~~~~vr~~~l~~l~~~l  161 (242)
T 2qk2_A           95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LEA------------QQESIVESLSNKNPSVKSETALFIARAL  161 (242)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HHH------------HHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HHH------------HHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence              1467788888999988888899999998865431 111            2334444443221111223345555554


Q ss_pred             HhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhc
Q 048744          163 VNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCF  210 (312)
Q Consensus       163 ~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF  210 (312)
                      .+...-..+..++ .   .++..++..++..+..=|..+..++-.++-
T Consensus       162 ~~~~~~~~~~~~l-~---~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          162 TRTQPTALNKKLL-K---LLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             TTCCGGGCCHHHH-H---HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCccHHHH-H---HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            4432100111222 1   245555555665666667777777777663

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=94.10  E-value=0.074  Score=50.40  Aligned_cols=98  Identities=14%  Similarity=0.119  Sum_probs=74.6

Q ss_pred             HHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHHHhhh
Q 048744            7 ELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAGKMVQ   84 (312)
Q Consensus         7 ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~~l~~   84 (312)
                      -|...+.++||-+|..|+..+..+...+     +..   .+.+.+++.+.|. +.+++.|+.|...|..+ |++.+    
T Consensus       108 sl~kDl~~~N~~iR~lALRtL~~I~~~~-----m~~---~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~----  175 (355)
T 3tjz_B          108 SLTKDMTGKEDSYRGPAVRALCQITDST-----MLQ---AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK----  175 (355)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCCTT-----THH---HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH----
T ss_pred             HHHhhcCCCcHhHHHHHHHHHhcCCCHH-----HHH---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH----
Confidence            3556777899999999999998886433     222   4677888889888 89999999999999854 44332    


Q ss_pred             hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744           85 MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD  117 (312)
Q Consensus        85 ~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~  117 (312)
                       +|++.+-+.+.+.++...-.|..+|..+...+
T Consensus       176 -~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          176 -RWVNEAQEAASSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             -TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence             58888888898877766667778888887655

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=93.98  E-value=0.22  Score=50.00  Aligned_cols=99  Identities=12%  Similarity=0.131  Sum_probs=66.1

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhh
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMV   83 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~   83 (312)
                      +.-|..||.+++++||..|+..+..+....+.   +++   .....++.++.|. ..+++.|+.+|..++....+.    
T Consensus       315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~---~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~----  384 (618)
T 1w63_A          315 INILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQ---RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIR----  384 (618)
T ss_dssp             HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHG---GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTH----
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHH---HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHH----
Confidence            45677888888888888888888766543221   222   2355777777776 788888888888887654432    


Q ss_pred             hhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744           84 QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ  115 (312)
Q Consensus        84 ~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~  115 (312)
                        ..+..++.++.+.+......++..+.+++.
T Consensus       385 --~iv~eL~~~l~~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          385 --GMMKELLYFLDSCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             --HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence              234556666666666677777777777754

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=93.91  E-value=0.086  Score=50.99  Aligned_cols=102  Identities=16%  Similarity=0.156  Sum_probs=68.8

Q ss_pred             HHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhhh
Q 048744            8 LLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQMG   86 (312)
Q Consensus         8 Lv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~~   86 (312)
                      +...++++++.||..|++.+-.+...-.+. ...   +.+++.+..++.|. ..+++.|+.+|..++..-.  ..-....
T Consensus       169 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~-~~~---~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~  242 (588)
T 1b3u_A          169 FRNLCSDDTPMVRRAAASKLGEFAKVLELD-NVK---SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP--QEDLEAL  242 (588)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-HHH---HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC--HHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHhcHH-hHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC--HHHHHHH
Confidence            345557889999999999887775432211 111   25788888888887 7788888888887763210  0111124


Q ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744           87 MIKTAMDLLYKPDSSITRLLVMLLVNLTQ  115 (312)
Q Consensus        87 ~i~~lv~~i~~~~~~~ad~a~mLLsNLT~  115 (312)
                      +++.+...+.++++.....++..|.++..
T Consensus       243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~  271 (588)
T 1b3u_A          243 VMPTLRQAAEDKSWRVRYMVADKFTELQK  271 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            56677777888888777788888887764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=93.70  E-value=0.018  Score=45.61  Aligned_cols=87  Identities=20%  Similarity=0.182  Sum_probs=67.8

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      .++.|+..|+++++.||..|+..|-.+..            +..++.|..++.|. +.++..|+.+|-++..        
T Consensus        43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------  102 (131)
T 1te4_A           43 AFEPLLESLSNEDWRIRGAAAWIIGNFQD------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------  102 (131)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCS------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------
Confidence            46889999999999999999998765531            13577888888887 8899999999998862        


Q ss_pred             hhhhHHHHHHHHHcCCCChhHHHHHHHHHh
Q 048744           83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVN  112 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsN  112 (312)
                        .+.++.+...+.++++.....++..|.+
T Consensus       103 --~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A          103 --ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             --HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             --HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence              3567778888888887777777766654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=93.66  E-value=1.1  Score=45.33  Aligned_cols=192  Identities=13%  Similarity=0.186  Sum_probs=105.0

Q ss_pred             HHhccCCC--CHHHHHHHHHHHHhcCCC-ccchh-hhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hh-HHH
Q 048744            8 LLGFLCSP--SPSVKKAAVDIVRGLTGS-EDGLQ-SLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SE-LAG   80 (312)
Q Consensus         8 Lv~FL~~~--~~~vR~~Al~~llgls~~-~~~~~-~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~-~~~   80 (312)
                      +++.+.++  +++||..|+..+..+... .++-. ... . +.+++.|..++.+. ..+++.|+.+|..+... +. +..
T Consensus       184 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~-~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~  261 (861)
T 2bpt_A          184 IVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGE-R-NYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKP  261 (861)
T ss_dssp             HHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHH-H-HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhH-H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566766  899999999998775422 11100 000 1 13677777777776 77888899999888642 11 122


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchH--------------HHhhhhhhhhhhhhHHHHHHHHhcC
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGIS--------------SLLQVEDEQIQGLYVMKLVRSFCRS  146 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~--------------~ll~~~~e~~~~~~l~~Ll~~f~~~  146 (312)
                      .+ ...++..++..+.+++......++..++++........              .++.   ... ...++.++..+...
T Consensus       262 ~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~il~~ll~~l~~~  336 (861)
T 2bpt_A          262 YM-EQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL---SSI-KDVVPNLLNLLTRQ  336 (861)
T ss_dssp             HH-HHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH---HHH-HHHHHHHHHHTTCC
T ss_pred             HH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH---HHH-HHHHHHHHHHHHhc
Confidence            22 11566667777788877888888888888865431100              0000   000 11245666666654


Q ss_pred             CCCCCCCch---hhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhcc
Q 048744          147 SSEASDDPF---EHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFE  211 (312)
Q Consensus       147 ~~~~~~~~~---~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~  211 (312)
                      ..+...+.+   ...+..|.+++..- | ..++.   .++..+...+.+.+...|.+++.++-+++-.
T Consensus       337 ~~d~~d~~~~~r~~a~~~L~~l~~~~-~-~~~~~---~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~  399 (861)
T 2bpt_A          337 NEDPEDDDWNVSMSAGACLQLFAQNC-G-NHILE---PVLEFVEQNITADNWRNREAAVMAFGSIMDG  399 (861)
T ss_dssp             CCC-CCCCCHHHHHHHHHHHHHHHHH-G-GGGHH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred             ccccccccCcHHHHHHHHHHHHHHHc-c-HhHHH---HHHHHHHHHcCCCChhHHHHHHHHHHHHHcC
Confidence            321111111   12334444444321 1 11111   1233333344566777889999999988843

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=93.08  E-value=0.19  Score=43.67  Aligned_cols=104  Identities=15%  Similarity=0.207  Sum_probs=75.1

Q ss_pred             HHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            5 LEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         5 l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      +.-|...|. ++++.||+.|+..+-.+...- + ..+..+-..+++.|+..++|. ..++..|..+|-++.....+    
T Consensus        58 ~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l-~-~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----  131 (242)
T 2qk2_A           58 VSALKKVITKDSNVVLVAMAGKCLALLAKGL-A-KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----  131 (242)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH-G-GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----
Confidence            344566674 899999999999998887431 1 122222235899999999998 67888888888888764322    


Q ss_pred             hhhhHHHHHHHHHcCCCChhHHHHHHHHHhh-cCC
Q 048744           83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNL-TQL  116 (312)
Q Consensus        83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNL-T~~  116 (312)
                        ..+++.+...+.+.++.....++..|..+ ++.
T Consensus       132 --~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~  164 (242)
T 2qk2_A          132 --EAQQESIVESLSNKNPSVKSETALFIARALTRT  164 (242)
T ss_dssp             --HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             --HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence              24677888888888877777888888884 444

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=92.47  E-value=1.6  Score=44.30  Aligned_cols=110  Identities=10%  Similarity=0.089  Sum_probs=71.2

Q ss_pred             HHHHHhccCCC--CHHHHHHHHHHHHhcCCC-ccch-hhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhH
Q 048744            5 LEELLGFLCSP--SPSVKKAAVDIVRGLTGS-EDGL-QSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSEL   78 (312)
Q Consensus         5 l~ELv~FL~~~--~~~vR~~Al~~llgls~~-~~~~-~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~   78 (312)
                      ++-+.+.+.++  +++||..|+..+..+... .++. ...+.  +.+++.+..++.+. ..++..|+.+|..+.. .+..
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            34466677765  799999999988765432 1110 00111  13677777777766 6778889999998864 2222


Q ss_pred             HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCC
Q 048744           79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQL  116 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~  116 (312)
                      ....+...+++.++..+.+++......++..++++.+.
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~  289 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            12222235677777777777777788888888888754

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=92.33  E-value=0.52  Score=48.00  Aligned_cols=161  Identities=9%  Similarity=0.037  Sum_probs=98.8

Q ss_pred             chHHHHHHhhccCccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHHH-HHcCCCChhHHHHHHHHHhhcCCc--cchHH
Q 048744           46 IALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMD-LLYKPDSSITRLLVMLLVNLTQLD--YGISS  122 (312)
Q Consensus        46 ~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv~-~i~~~~~~~ad~a~mLLsNLT~~~--~~~~~  122 (312)
                      .++|-|-.|-+..+..+.-|+.+|-||+.++..+..+.+.+.|..++. .+.|++......|+..|.||+..+  ..|..
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~  114 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH  114 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence            466655554444488999999999999999999999998888887665 588899999999999999999764  23344


Q ss_pred             HhhhhhhhhhhhhHHHHHHHHhc-------CCCC-CCC------CchhhH---HHHHHhhcC-Chhhhhhhcccccchhh
Q 048744          123 LLQVEDEQIQGLYVMKLVRSFCR-------SSSE-ASD------DPFEHV---GSILVNISK-KEAGRKILLDPKRGLLK  184 (312)
Q Consensus       123 ll~~~~e~~~~~~l~~Ll~~f~~-------~~~~-~~~------~~~~~l---a~vl~NlS~-~~~gR~~~l~~~~~~l~  184 (312)
                      ++..+       .+..|..+|-+       .... .+.      --+++.   .++|.|++. ..+....+...  +.+.
T Consensus       115 l~~~~-------il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~--~~l~  185 (684)
T 4gmo_A          115 LYRLD-------VLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK--QTIL  185 (684)
T ss_dssp             HHHTT-------HHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC--HHHH
T ss_pred             HHHcC-------hHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc--ccHH
Confidence            44432       13344444322       1110 000      012333   344555442 23334444443  3455


Q ss_pred             hhhhccc---CCchhhHhhHHHHHHhhhccchhh
Q 048744          185 QIVRQFD---SSNYLRKKGVSGTIRNCCFEAEHQ  215 (312)
Q Consensus       185 ~ll~~~~---~~s~iRR~gva~~ikNccF~~~~H  215 (312)
                      .++..+.   ..+.--+..++.+|.+++=|....
T Consensus       186 ~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~  219 (684)
T 4gmo_A          186 RLLFRLISADIAPQDIYEEAISCLTTLSEDNLKV  219 (684)
T ss_dssp             HHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHH
Confidence            5555432   123445778888998888765443

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=92.25  E-value=0.71  Score=49.60  Aligned_cols=107  Identities=14%  Similarity=0.139  Sum_probs=74.8

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhh-hcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLS-KYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA   79 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~-~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~   79 (312)
                      .++..|++=+.++++++|..|++.|......+...  +- ...+.+++.|+..+.+. ..+++.|+.+|-++... +.  
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~--~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--   81 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIK--LDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--   81 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCS--CCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccC--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--
Confidence            45888888899999999999999887664332110  00 01124778888888877 78889999999888643 11  


Q ss_pred             HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744           80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ  115 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~  115 (312)
                      ..+  ..++..++..+.++++.....++..|+.++.
T Consensus        82 ~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~  115 (1230)
T 1u6g_C           82 YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIG  115 (1230)
T ss_dssp             HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            111  2456778888888888777778887777653

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=91.56  E-value=1.5  Score=44.41  Aligned_cols=183  Identities=15%  Similarity=0.103  Sum_probs=100.0

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC---ccchhhHHHHHHhc-CCChhHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN---KEVSEPATEALVNL-SQNSELA   79 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~---~~~~~~Al~~LiNL-S~d~~~~   79 (312)
                      ++.+++.-+.++++++|+.|.+.|-.+..+         +.++++..|+..+.+.   ..++.-|..+|-|. ..+...+
T Consensus         2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~---------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~   72 (876)
T 1qgr_A            2 ELITILEKTVSPDRLELEAAQKFLERAAVE---------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDI   72 (876)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHHhc---------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHh
Confidence            577888888899999999999999775321         0124666777776552   46677888888874 3331111


Q ss_pred             --------HHhhh--h-hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcC--
Q 048744           80 --------GKMVQ--M-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRS--  146 (312)
Q Consensus        80 --------~~l~~--~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~--  146 (312)
                              ..+-.  . .+-..++..+.++++.. ..++.+++.+.+.+..        ...++. .++.|+..+..+  
T Consensus        73 ~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--------~~~w~~-ll~~l~~~l~~~~~  142 (876)
T 1qgr_A           73 KAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--------VNQWPE-LIPQLVANVTNPNS  142 (876)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--------GTCCTT-HHHHHHHHHHCTTC
T ss_pred             HHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc--------ccccHH-HHHHHHHHHhCCCC
Confidence                    11111  1 22335777777777666 7888888888765421        012332 355666666544  


Q ss_pred             CCCCCCCchhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCC--chhhHhhHHHHHHhhhc
Q 048744          147 SSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSS--NYLRKKGVSGTIRNCCF  210 (312)
Q Consensus       147 ~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~--s~iRR~gva~~ikNccF  210 (312)
                      +...+...+.-++.++..+.  ++   .+-..-..++..++..+.++  +..-|..++.++.+++-
T Consensus       143 ~~~~r~~al~~l~~l~~~~~--~~---~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~  203 (876)
T 1qgr_A          143 TEHMKESTLEAIGYICQDID--PE---QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHHSC--HH---HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred             CHHHHHHHHHHHHHHHHhcC--Hh---hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence            11111112233333333221  11   12111112334444334433  56667788899988873

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=91.39  E-value=5.4  Score=42.73  Aligned_cols=104  Identities=13%  Similarity=0.170  Sum_probs=69.6

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC--hh----
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN--SE----   77 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d--~~----   77 (312)
                      +..|++.|.++++.||+.|+..+..+...-.. ..+    +.+++.|+..+.+. ..++..|..+|-.++..  +.    
T Consensus        50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~----~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~  124 (1230)
T 1u6g_C           50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGS  124 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----C
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccccc
Confidence            56788999999999999999998777644221 111    14677888888776 66666677777665421  11    


Q ss_pred             -HHHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhc
Q 048744           78 -LAGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLT  114 (312)
Q Consensus        78 -~~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT  114 (312)
                       ..... -..+++.++..+.+ +++.....++..|+++.
T Consensus       125 ~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~  162 (1230)
T 1u6g_C          125 ALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADML  162 (1230)
T ss_dssp             CTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             chHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence             00101 12567888888874 66677778888888876

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=90.87  E-value=2.3  Score=38.21  Aligned_cols=65  Identities=17%  Similarity=0.112  Sum_probs=38.7

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEAL   69 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~L   69 (312)
                      .+..|+.||++.++.+|..|+..|=-+....++.-...... ..++.++.++.+. ..++-.|+.||
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L   99 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRAL   99 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHH
Confidence            46789999999999999999988866654422221111111 3455555555444 44555555544

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=89.76  E-value=0.57  Score=47.57  Aligned_cols=106  Identities=13%  Similarity=0.120  Sum_probs=67.0

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCcc----chhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCC-----
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSED----GLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQN-----   75 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~----~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d-----   75 (312)
                      ++.|+..+.++++.||..|+..+-.++..-.    +... +   +.+++.|+..+++.+.++..|..+|.+++..     
T Consensus       413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~---~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~  488 (861)
T 2bpt_A          413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-L---PGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEAT  488 (861)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-H---HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-H---HHHHHHHHHHhccChHHHHHHHHHHHHHHHhccccc
Confidence            5667888899999999999876655543211    1111 1   2578888888888777788888888887642     


Q ss_pred             -hhHHHHhhhhhHHHHHHHHHcCCC--ChhHHHHHHHHHhhcCC
Q 048744           76 -SELAGKMVQMGMIKTAMDLLYKPD--SSITRLLVMLLVNLTQL  116 (312)
Q Consensus        76 -~~~~~~l~~~~~i~~lv~~i~~~~--~~~ad~a~mLLsNLT~~  116 (312)
                       ..+..++  ..++..++..+.+++  +.....++..+.++...
T Consensus       489 ~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~  530 (861)
T 2bpt_A          489 PSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEY  530 (861)
T ss_dssp             SCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred             chhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence             1111111  245667777776433  44444566666666543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=89.30  E-value=1.1  Score=42.06  Aligned_cols=112  Identities=14%  Similarity=0.071  Sum_probs=84.1

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHh-cCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRG-LTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llg-ls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      ..++++-|.+.+...++.|+-.|-. ++...+--....+++ | +..|++.+.+. ......|++||.+|-.....-+-+
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~-G-L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv  197 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSE-G-LSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV  197 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTT-H-HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhc-c-HHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence            5567777777777778888888887 665444333322332 3 78888888776 778999999999999887777777


Q ss_pred             hhh-hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCcc
Q 048744           83 VQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY  118 (312)
Q Consensus        83 ~~~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~  118 (312)
                      ++. .+|.+++.++.+........+..||-++.-..+
T Consensus       198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se  234 (339)
T 3dad_A          198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE  234 (339)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG
T ss_pred             hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc
Confidence            754 899999999997666778888999988866554

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=88.89  E-value=1.5  Score=38.23  Aligned_cols=75  Identities=25%  Similarity=0.397  Sum_probs=58.3

Q ss_pred             CcchHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhH
Q 048744            1 MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSEL   78 (312)
Q Consensus         1 m~~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~   78 (312)
                      |+.-++|+.+.|++++..=|-.|+..+-++..+.  -+.+   . -++|-|..|+.|. .-+...|+.+|+|+.. ++.+
T Consensus       142 ~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--~~yv---~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl  215 (253)
T 2db0_A          142 MASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--FKYV---N-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL  215 (253)
T ss_dssp             HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--HHHH---G-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--cccc---C-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH
Confidence            3566889999999999888999999998885433  1121   1 4799999999999 7788899999999985 4554


Q ss_pred             HHH
Q 048744           79 AGK   81 (312)
Q Consensus        79 ~~~   81 (312)
                      +..
T Consensus       216 Rki  218 (253)
T 2db0_A          216 RKV  218 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=88.46  E-value=4.1  Score=37.63  Aligned_cols=190  Identities=10%  Similarity=0.044  Sum_probs=103.0

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhccc-chHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHH--
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSK-IALPSLARLLSEN-KEVSEPATEALVNLSQNSELAG--   80 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~-~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~--   80 (312)
                      ++.|.+.+.++.++||+.|++.+..+......  .+...-. .+++.+...+.+. ..++..|+..+.+++.......  
T Consensus       219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~  296 (462)
T 1ibr_B          219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ--YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE  296 (462)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG--GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455667788999999999999887654321  1212222 4677777777776 7788889998888864421000  


Q ss_pred             ----------------Hhhh---hhHHHHHHHHHcCC-------CChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhh
Q 048744           81 ----------------KMVQ---MGMIKTAMDLLYKP-------DSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGL  134 (312)
Q Consensus        81 ----------------~l~~---~~~i~~lv~~i~~~-------~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~  134 (312)
                                      .+++   ..+++.++..+.+.       ++.....++..|..++..-.  ..++.       . 
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~~-------~-  366 (462)
T 1ibr_B          297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP-------H-  366 (462)
T ss_dssp             HCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHHH-------H-
T ss_pred             cccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHHH-------H-
Confidence                            0111   23455666666532       23455566677766654321  11111       0 


Q ss_pred             hHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhhhhcccc-cchhhhhhhcccCCchhhHhhHHHHHHhhhccc
Q 048744          135 YVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPK-RGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEA  212 (312)
Q Consensus       135 ~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~~-~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~  212 (312)
                      .++.+...+.......+    +-....|.+++.-... .. +.+. ..++..+++.+.++++.-|..++.++-++|-..
T Consensus       367 ~~~~l~~~l~~~~~~~r----~aal~~l~~l~~~~~~-~~-~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          367 VLPFIKEHIKNPDWRYR----DAAVMAFGCILEGPEP-SQ-LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             HHHHHHHHTTCSSHHHH----HHHHHHHHHTSSSSCT-TT-TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHhcCCChHHH----HHHHHHHHHHhcCCcH-HH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            12233333322211111    1123455555542110 11 1111 135566666677788888999999999999543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=87.61  E-value=0.5  Score=41.87  Aligned_cols=71  Identities=13%  Similarity=0.299  Sum_probs=52.3

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccch-hhhhhcc-cchHHHHHHhhccC-ccchhhHHHHHHhcC
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGL-QSLSKYS-KIALPSLARLLSEN-KEVSEPATEALVNLS   73 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~-~~i~~~~-~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS   73 (312)
                      .-++.|+.+|.++++.+|..|+..|..+....... ..+...- +.+++.|..++.|. +.++..|..+|.-+.
T Consensus       146 ~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          146 DMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            34778999999999999999999987776442210 2222222 46899999999998 778888888777654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=85.56  E-value=1.5  Score=38.80  Aligned_cols=191  Identities=5%  Similarity=0.009  Sum_probs=101.7

Q ss_pred             HHhccCCCCHHHHHHHHHHHHh-cC-CCccchhhhhhcccchHHHHHHhh-ccC-ccchhhHHHHHHhcCCChhHH-HHh
Q 048744            8 LLGFLCSPSPSVKKAAVDIVRG-LT-GSEDGLQSLSKYSKIALPSLARLL-SEN-KEVSEPATEALVNLSQNSELA-GKM   82 (312)
Q Consensus         8 Lv~FL~~~~~~vR~~Al~~llg-ls-~~~~~~~~i~~~~~~~i~~L~~L~-~d~-~~~~~~Al~~LiNLS~d~~~~-~~l   82 (312)
                      ..+.+.+++..-|+.|++.|.. +. +...-... ...-..+++.|+..+ .|. ..++..|+.||-.++.  ... ..+
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~-~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~--~l~~~~f   97 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKST-SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD--KLKTPGF   97 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCT-TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH--HHCTTTS
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccC-cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH--hcccccc
Confidence            3455689999999999999999 75 32221100 011125788888888 576 6678888888888872  112 112


Q ss_pred             h-hh--hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744           83 V-QM--GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG  159 (312)
Q Consensus        83 ~-~~--~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la  159 (312)
                      . ..  .+++.+++.+.+.+....+.+...|.++..+-... ......    +. .+..|+..+-......+...+.+++
T Consensus        98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~-~~~~~l----~~-ll~~l~~~l~~k~~~vk~~al~~l~  171 (249)
T 2qk1_A           98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL-ASSGRN----ED-MLKDILEHMKHKTPQIRMECTQLFN  171 (249)
T ss_dssp             CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT-CTTCTT----HH-HHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc-ccCCcH----HH-HHHHHHHHHcCCChHHHHHHHHHHH
Confidence            1 11  35778888888887776666666666554321100 000000    00 2334444443321112234467777


Q ss_pred             HHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhh
Q 048744          160 SILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCC  209 (312)
Q Consensus       160 ~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNcc  209 (312)
                      .++.+-...|.-=...+.+  .++..+...+...+..-|..+..++--+|
T Consensus       172 ~~~~~~~~~~~~l~~~l~~--~iip~l~~~l~D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          172 ASMKEEKDGYSTLQRYLKD--EVVPIVIQIVNDTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             HHHHHCCSCSHHHHHHHTT--THHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcchhHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            7776543321210001111  14455555555555555666666666655

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=84.66  E-value=3  Score=41.90  Aligned_cols=94  Identities=21%  Similarity=0.275  Sum_probs=63.2

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhc-cC-ccchhhHHHHHHhcCCChhHHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLS-EN-KEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~-d~-~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      .+.-|..||.++++++|-.|+..+..+....+....+ +   .....++.++. |. ..++..|+.+|..++.... .+.
T Consensus       330 ~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~---~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N-v~~  404 (621)
T 2vgl_A          330 ACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K---THIETVINALKTERDVSVRQRAVDLLYAMCDRSN-AQQ  404 (621)
T ss_dssp             HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH-HHH
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H---HHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh-HHH
Confidence            3567889999999999999999999988664322222 2   23557777776 66 8899999999999986543 333


Q ss_pred             hhhhhHHHHHHHHHcCCCChhHHHHH
Q 048744           82 MVQMGMIKTAMDLLYKPDSSITRLLV  107 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~~~ad~a~  107 (312)
                           ++..+..++.+.+......+.
T Consensus       405 -----Iv~eL~~yl~~~d~~~~~~~v  425 (621)
T 2vgl_A          405 -----IVAEMLSYLETADYSIREEIV  425 (621)
T ss_dssp             -----HHHHHHHHHHHCCHHHHHHHH
T ss_pred             -----HHHHHHHHHHhcCHHHHHHHH
Confidence                 334455555544444443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-05

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 2e-09
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 3/116 (2%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL--SENKEVS 62
           + EL   L      V   A  +V  L+  E    ++ +  ++ + ++ R +  + + E +
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM-VSAIVRTMQNTNDVETA 77

Query: 63  EPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY 118
                 L NLS + E    + + G I   + +L  P  S+    +  L NL     
Sbjct: 78  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 16  SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL-SENKEVSEPATEALVNLSQ 74
              + +     +  L         +   +   +P   +LL S  + +   A   L  L+Q
Sbjct: 432 MEEIVEGCTGALHILARDVHNRIVIRGLN--TIPLFVQLLYSPIENIQRVAAGVLCELAQ 489

Query: 75  NSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNL 113
           + E A  +   G      +LL+  +  +      +L  +
Sbjct: 490 DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 2   ANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL-SENKE 60
            N +   +  L SP  ++++ A  ++  L   ++  +++      A   L  LL S N+ 
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEG--ATAPLTELLHSRNEG 516

Query: 61  VSEPATEALVNLS 73
           V+  A   L  +S
Sbjct: 517 VATYAAAVLFRMS 529

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 33/218 (15%), Positives = 82/218 (37%), Gaps = 10/218 (4%)

Query: 5   LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL-SENKEVSE 63
           + + + +L S     +      ++     ++  +         +  L  LL S N+ V +
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLG-GICKLVDLLRSPNQNVQQ 62

Query: 64  PATEALVNLS-QNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVM-LLVNLTQLDYGIS 121
            A  AL NL  +++    +  +   I+ A+ LL +  ++  +  +  LL NL+  D    
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 122 SLLQVEDEQIQGLYVMKLVRSFCRSSSEASD----DPFEHVGSILVNISKKEAGRKILLD 177
            L+      +    ++        +S+ + +    + F +    L N+S  +AGR+ + +
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 178 PKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ 215
               +    +  +  +     +    ++ NC     + 
Sbjct: 183 YSGLI--DSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.31
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.24
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.18
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.9
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.86
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.73
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.47
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	96.66
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.38
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	96.13
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	95.6
d1b3ua_	588	Constant regulatory domain of protein phosphatase	95.24
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	95.19
d1b3ua_	588	Constant regulatory domain of protein phosphatase	93.84
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	90.2
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	90.05
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	89.67
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	89.15
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	87.65
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	84.45
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	82.81
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	81.89
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	81.07

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=4.8e-11  Score=110.16  Aligned_cols=262  Identities=16%  Similarity=0.162  Sum_probs=181.5

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCcc--chhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCC-ChhH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSED--GLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQ-NSEL   78 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~--~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~-d~~~   78 (312)
                      .++++|.-|.+++++++..|+..+..+.....  .++.+.+.  ++++.|++++++.  +.+...|+.+|-|++. ++..
T Consensus        14 ~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRA--GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHT--TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC--CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            48999999999999999999999987643322  24455553  6899999999654  5678899999999964 5677


Q ss_pred             HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCC-Cchhh
Q 048744           79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASD-DPFEH  157 (312)
Q Consensus        79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~-~~~~~  157 (312)
                      ...+++.|+++.++..+.+++......++..|+|++.........+...     + .+..|+..+......... .....
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-----~-~~~~l~~~l~~~~~~~~~~~~~~~  165 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH-----G-AIDPLLALLAVPDLSTLACGYLRN  165 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----T-CHHHHHHHTCSSCGGGSCHHHHHH
T ss_pred             hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHh-----h-hhhHHHHHHHhcccccchHHHHHH
Confidence            8888888999999999999888899999999999998765544433211     1 367888887766543221 11344


Q ss_pred             HHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744          158 VGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN  237 (312)
Q Consensus       158 la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~  237 (312)
                      ++..++|+.+.......+.. ..+.+..++..+.+.+.--+..++.++.|+|....... ..+. ..+++|.+.      
T Consensus       166 ~~~~l~~~~~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~-~~~~~~~Lv------  236 (434)
T d1q1sc_         166 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI-EMVV-KKGVVPQLV------  236 (434)
T ss_dssp             HHHHHHHHTCCCTTCCCHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH-HHHH-TTTCHHHHH------
T ss_pred             HHHHHHHHhhcccccchhhh-hhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhH-HHHh-hcccchhcc------
Confidence            56677777665432221111 11345555555666777778889999999998765542 2222 223444431      


Q ss_pred             CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhcccccc
Q 048744          238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVHGSGT  303 (312)
Q Consensus       238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr~~~~  303 (312)
                                     ++ +   +.  .++.++...+.+|..|++ +...+..+.+.|+.+.+..+-.
T Consensus       237 ---------------~l-l---~~--~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~  282 (434)
T d1q1sc_         237 ---------------KL-L---GA--TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT  282 (434)
T ss_dssp             ---------------HH-H---TC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT
T ss_pred             ---------------cc-c---cc--chhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhc
Confidence                           11 1   11  278899999999998876 5567778888888877665543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=2e-10  Score=109.18  Aligned_cols=252  Identities=16%  Similarity=0.178  Sum_probs=183.9

Q ss_pred             hHHHHHhccC-CCCHHHHHHHHHHHHhcCCCcc-chhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744            4 ELEELLGFLC-SPSPSVKKAAVDIVRGLTGSED-GLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA   79 (312)
Q Consensus         4 ~l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~-~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~   79 (312)
                      -++.|+++|+ +.+++++..|+..|..++...+ ....+.. . ++++.++.++.+. ..+...|+.+|-|++.+ +..+
T Consensus       120 ~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~-~-g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r  197 (503)
T d1wa5b_         120 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD-A-DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  197 (503)
T ss_dssp             CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-T-TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHh-C-CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHH
Confidence            3678999998 4688999999999998875543 3333433 3 6899999998776 78999999999999865 6888


Q ss_pred             HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744           80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG  159 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la  159 (312)
                      ..+.+.|+++.++..+.+........++.+|+|+++.......+...     .+ .++.|+..+..++.    ....+.+
T Consensus       198 ~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~-----~~-~l~~l~~~l~~~d~----~~~~~~~  267 (503)
T d1wa5b_         198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV-----SQ-ALPTLAKLIYSMDT----ETLVDAC  267 (503)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH-----GG-GHHHHHHHTTCCCH----HHHHHHH
T ss_pred             HHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHH-----HH-HHHHHHHHhccccH----HHHHHHH
Confidence            88888899999999999888888889999999999876543322111     11 25566665544321    2345677


Q ss_pred             HHHHhhcC-ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCC
Q 048744          160 SILVNISK-KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNK  238 (312)
Q Consensus       160 ~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~e  238 (312)
                      ..+.+++. .++....+++.+  .++.++..+.+++..-+.-++.+|.|+|...+... ..+. +.+++|++..-+-   
T Consensus       268 ~~l~~l~~~~~~~~~~~~~~~--~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~-~~~~-~~~~l~~l~~ll~---  340 (503)
T d1wa5b_         268 WAISYLSDGPQEAIQAVIDVR--IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT-QVVI-NAGVLPALRLLLS---  340 (503)
T ss_dssp             HHHHHHHSSCHHHHHHHHHTT--CHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH-HHHH-HTTHHHHHHHHTT---
T ss_pred             HHHHhhccCCchhhhhhhhhh--hhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHH-Hhhh-ccchHHHHHHHhc---
Confidence            88999875 455667777754  67888888788888888999999999998777663 2222 2345555422111   


Q ss_pred             CCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhc
Q 048744          239 VYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLV  298 (312)
Q Consensus       239 e~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vl  298 (312)
                                            .  +++.||...+-+|-.+++ +...+..+.+.|+.+.+
T Consensus       341 ----------------------~--~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~l  377 (503)
T d1wa5b_         341 ----------------------S--PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL  377 (503)
T ss_dssp             ----------------------C--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred             ----------------------C--CCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchh
Confidence                                  1  278899999999998876 55677777777776643

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.9e-11  Score=112.29  Aligned_cols=248  Identities=16%  Similarity=0.104  Sum_probs=182.2

Q ss_pred             hHHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChh-HHH
Q 048744            4 ELEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSE-LAG   80 (312)
Q Consensus         4 ~l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~-~~~   80 (312)
                      -++.|+..|. ..+++++..|+..|..++.+++++..+++.  +.++.|+.+++++ +.+...|+.+|-|++.+.. .+.
T Consensus        60 ~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~  137 (529)
T d1jdha_          60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM  137 (529)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHC--CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhh
Confidence            3678889997 468999999999999999999999988875  6899999999888 8899999999999986644 455


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS  160 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~  160 (312)
                      .+.+.|+|+.++..+.+++......++..|.|++..+......+..     .| .+..|+..+..+...   .-....+.
T Consensus       138 ~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-----~~-~~~~L~~ll~~~~~~---~~~~~~~~  208 (529)
T d1jdha_         138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-----SG-GPQALVNIMRTYTYE---KLLWTTSR  208 (529)
T ss_dssp             HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-----TT-HHHHHHHHHHHCCCH---HHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHh-----cc-cchHHHHHHHhhhhH---HHHHHHHH
Confidence            5667799999999999988888899999999999776433322211     11 367888888665431   23456788


Q ss_pred             HHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCCC
Q 048744          161 ILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVY  240 (312)
Q Consensus       161 vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~  240 (312)
                      ++.|++..++.|..+++.+  .++.++....+++..-+..+++++.|+.-+....    .. ....+|            
T Consensus       209 ~l~~ls~~~~~~~~~~~~g--~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~----~~-~~~~i~------------  269 (529)
T d1jdha_         209 VLKVLSVCSSNKPAIVEAG--GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EG-MEGLLG------------  269 (529)
T ss_dssp             HHHHHTTSTTHHHHHHHTT--HHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC----SC-CHHHHH------------
T ss_pred             HHhhhhccccccchhhhhh--hhhhHHHHhcccchhhhhhhhhHHHhccccccch----hh-hhhcch------------
Confidence            9999999999999998864  6778887777788877888999999986322211    00 001122            


Q ss_pred             ChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcch
Q 048744          241 KEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPR  296 (312)
Q Consensus       241 ~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~  296 (312)
                               .-+++ +.   .  +|+.++...+.+|..||+ +...+..+.+.|+.+
T Consensus       270 ---------~Lv~l-l~---~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  311 (529)
T d1jdha_         270 ---------TLVQL-LG---S--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE  311 (529)
T ss_dssp             ---------HHHHH-TT---C--SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHH
T ss_pred             ---------hhhhh-cc---c--ccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHH
Confidence                     22221 21   1  278888888889988875 445555555555443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.9e-10  Score=101.08  Aligned_cols=114  Identities=21%  Similarity=0.213  Sum_probs=98.1

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCC-CccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTG-SEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAG   80 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~-~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~   80 (312)
                      .++.||++|++++|+||..|+..|..++. +++++..+.+.  +.|+.|+.+++++ +.+...|+.+|-||+ .++..+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL--GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHT--THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            47899999999999999999999999985 57888888764  6899999999887 889999999999999 5678888


Q ss_pred             HhhhhhHHHHHHHHHcCCCC-hhHHHHHHHHHhhcCCccc
Q 048744           81 KMVQMGMIKTAMDLLYKPDS-SITRLLVMLLVNLTQLDYG  119 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~-~~ad~a~mLLsNLT~~~~~  119 (312)
                      .+.+.|.|+.++..+.+... .....++.+|.|++..+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~  120 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL  120 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh
Confidence            89988999999998876444 4667888999999887643

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=7.5e-10  Score=101.95  Aligned_cols=254  Identities=17%  Similarity=0.201  Sum_probs=175.1

Q ss_pred             hHHHHHhccCC-CCHHHHHHHHHHHHhcCC-CccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744            4 ELEELLGFLCS-PSPSVKKAAVDIVRGLTG-SEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA   79 (312)
Q Consensus         4 ~l~ELv~FL~~-~~~~vR~~Al~~llgls~-~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~   79 (312)
                      -++.|+++|++ ++++||..|+..|..++. +++.+..+...  ++++.|+.++..+ ..+...|+.+|-|++.+ +..+
T Consensus        57 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~--~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~  134 (434)
T d1q1sc_          57 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  134 (434)
T ss_dssp             CHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhc--cchhhhhhccccCCHHHHHHHHHHHHHHhccchHHH
Confidence            36789999974 688999999999999854 46666666553  6899999999887 78999999999999875 5666


Q ss_pred             HHhhhhhHHHHHHHHHcCCCCh-----hHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCc
Q 048744           80 GKMVQMGMIKTAMDLLYKPDSS-----ITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDP  154 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~~~~~-----~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~  154 (312)
                      ..+.+.+.+..++..+..+...     ....++..++|++........+...     .+ .++.|+..+..++    ..-
T Consensus       135 ~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~-~l~~l~~ll~~~~----~~~  204 (434)
T d1q1sc_         135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV-----EQ-ILPTLVRLLHHND----PEV  204 (434)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHH-----HH-HHHHHHHHTTCSC----HHH
T ss_pred             HHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhh-----hh-HHHHHHHHHhccc----cch
Confidence            7777779999999998765542     3345677899998876433221111     11 2344444443322    122


Q ss_pred             hhhHHHHHHhhcCChhhhhhh-cccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhc
Q 048744          155 FEHVGSILVNISKKEAGRKIL-LDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLP  233 (312)
Q Consensus       155 ~~~la~vl~NlS~~~~gR~~~-l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlP  233 (312)
                      ....+..+.|+++.+..+..+ ...  |.++.++....+++..-+..++.+|.|+|...+.....++.  .++++.+.  
T Consensus       205 ~~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~--~~~~~~l~--  278 (434)
T d1q1sc_         205 LADSCWAISYLTDGPNERIEMVVKK--GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID--AGALAVFP--  278 (434)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHTT--TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTGGGGHH--
T ss_pred             hhhHHhhhcccchhhhhhHHHHhhc--ccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHh--ccccchHH--
Confidence            456778999999877655544 443  46788887777788888899999999999865554222332  22333321  


Q ss_pred             ccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhccc
Q 048744          234 VAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVHG  300 (312)
Q Consensus       234 laG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr~  300 (312)
                                         + .+.   .  ++++||...+.+|..||. +...++.+.+.|+.+.+-.
T Consensus       279 -------------------~-ll~---~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~  321 (434)
T d1q1sc_         279 -------------------S-LLT---N--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG  321 (434)
T ss_dssp             -------------------H-HTT---C--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred             -------------------H-hhc---c--cchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHH
Confidence                               1 111   1  378899999999999986 5666778888887774433

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.2e-10  Score=108.31  Aligned_cols=212  Identities=16%  Similarity=0.133  Sum_probs=163.9

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCCChhHHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      .+++|+..|.+.+..+|..|+..+..++..+..+..+.+.. ++++.|+++++..  ....+.|..+|-|||.++..+..
T Consensus        18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~-~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (529)
T d1jdha_          18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP-QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA   96 (529)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence            48999999999999999999999999998887777776643 6899999998654  57899999999999999999999


Q ss_pred             hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHH
Q 048744           82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSI  161 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~v  161 (312)
                      +++.|.|+.++..+.++++.....++..|.||+...+...+.+..     .| .+..|++++..+..    .-..+.+..
T Consensus        97 i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-----~g-~i~~Lv~lL~~~~~----~~~~~a~~~  166 (529)
T d1jdha_          97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-----AG-GLQKMVALLNKTNV----KFLAITTDC  166 (529)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH-----HT-HHHHHHHGGGCCCH----HHHHHHHHH
T ss_pred             HHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHh-----cC-CchHHHHHHHccCh----HHHHHHHHH
Confidence            999999999999999999999999999999999887766654431     12 47888888755422    234667888


Q ss_pred             HHhhcC-Chhhhhhhcccccchhhhhhhccc-CCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhh
Q 048744          162 LVNISK-KEAGRKILLDPKRGLLKQIVRQFD-SSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALL  231 (312)
Q Consensus       162 l~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~-~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lL  231 (312)
                      +.|++. .++.|..+.+.+  .+..++..+. +.....+..++.++.|++.+.+... .+...  ..++.|.
T Consensus       167 L~~l~~~~~~~~~~~~~~~--~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~-~~~~~--g~~~~L~  233 (529)
T d1jdha_         167 LQILAYGNQESKLIILASG--GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVEA--GGMQALG  233 (529)
T ss_dssp             HHHHHTTCHHHHHHHHHTT--HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHH-HHHHT--THHHHHH
T ss_pred             HHHHhhhhhHHHHHHHhcc--cchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccc-hhhhh--hhhhhHH
Confidence            999985 466777776654  4555554432 3455677889999999999877752 34332  3444443

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=6.4e-09  Score=98.55  Aligned_cols=252  Identities=17%  Similarity=0.129  Sum_probs=177.0

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCCh-hHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNS-ELAG   80 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~-~~~~   80 (312)
                      -++-|+++|.+++++++..|+..+..+++. .+.+..+...  ++++.|+.++.+. ..+.+.|..+|.|++... ....
T Consensus       163 ~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~--~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         163 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC--NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             ChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhh--cccccchhhcccCCHHHHHHHHHHHHHHhcCCccchH
Confidence            367789999999999999999999999876 6677777664  6799999999887 788999999999998643 2233


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccch-HHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI-SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG  159 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~-~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la  159 (312)
                      .....++++.++..+..++......+|..|++|+...... ..+++.      + .+..|+.++..+...    -.....
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~------~-~~~~l~~ll~~~~~~----v~~~al  309 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV------R-IPKRLVELLSHESTL----VQTPAL  309 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT------T-CHHHHHHGGGCSCHH----HHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhh------h-hhhhhhhcccCCchh----hhhhHH
Confidence            3333488999999998888888889999999999766433 233332      1 366777777655321    234567


Q ss_pred             HHHHhhcCChhh-hhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCC
Q 048744          160 SILVNISKKEAG-RKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNK  238 (312)
Q Consensus       160 ~vl~NlS~~~~g-R~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~e  238 (312)
                      .++.|+++.... ...+++.  |++..+...+.++++.-|..++.+|.|+|.....+. ..+. +.+++|.++-.+-.  
T Consensus       310 ~~l~nl~~~~~~~~~~~~~~--~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~-~~i~-~~~~l~~li~~l~~--  383 (503)
T d1wa5b_         310 RAVGNIVTGNDLQTQVVINA--GVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI-QAVI-DANLIPPLVKLLEV--  383 (503)
T ss_dssp             HHHHHHTTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH-HHHH-HTTCHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHhhhcc--chHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHH-HHHH-HccccchhHHhccc--
Confidence            889998876543 3345543  466666666676676677889999999998777764 2332 33455554322211  


Q ss_pred             CCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcC----HhHHHHHHhCCcchhcc
Q 048744          239 VYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQ----EAGLRAFWSVNGPRLVH  299 (312)
Q Consensus       239 e~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t----~~gR~~lr~~~vy~vlr  299 (312)
                                               .+++|+...+.+|..++..    .....+|.+.|+.+.+-
T Consensus       384 -------------------------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~  423 (503)
T d1wa5b_         384 -------------------------AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC  423 (503)
T ss_dssp             -------------------------SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHH
T ss_pred             -------------------------CChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHH
Confidence                                     2678888888888887642    23456777777766443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.1e-08  Score=89.88  Aligned_cols=199  Identities=13%  Similarity=0.163  Sum_probs=149.6

Q ss_pred             hHHHHHhccCCC------------CHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHH-HhhccC-ccchhhHHHHH
Q 048744            4 ELEELLGFLCSP------------SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLA-RLLSEN-KEVSEPATEAL   69 (312)
Q Consensus         4 ~l~ELv~FL~~~------------~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~-~L~~d~-~~~~~~Al~~L   69 (312)
                      ++++.+..++.+            ..+.|..|++.|..+..+.+++..+.+.  +.++.|+ .++.+. +.+...|+.+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~--gg~~~ll~~ll~s~~~~vr~~A~~~L   83 (264)
T d1xqra1           6 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQL--SGMHLLVGRYLEAGAAGLRWRAAQLI   83 (264)
T ss_dssp             HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHT--THHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccCcchHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHc--CCHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            355666666644            4588999999999999888887777765  4566665 466666 78999999999


Q ss_pred             HhcCC-ChhHHHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCC
Q 048744           70 VNLSQ-NSELAGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSS  147 (312)
Q Consensus        70 iNLS~-d~~~~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~  147 (312)
                      -|++. ++.+...+++.|.++.++..+.+ +.+.....++..|+|+++........+..    ..  .+..|++.+..+.
T Consensus        84 ~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~----~~--gi~~L~~lL~~~~  157 (264)
T d1xqra1          84 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR----LD--GFSVLMRAMQQQV  157 (264)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH----TT--HHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHH----hh--hhhHHHHHHhcCc
Confidence            99997 47778888888999999999964 44556778999999999887654433321    11  3678888876653


Q ss_pred             CCCCCCchhhHHHHHHhhc-CChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhh
Q 048744          148 SEASDDPFEHVGSILVNIS-KKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQL  216 (312)
Q Consensus       148 ~~~~~~~~~~la~vl~NlS-~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~  216 (312)
                      .    .-..+.+..+.|++ ..++.+..+.+.+  .++.|+..++++++.=|+.++.+|.|++.+.....
T Consensus       158 ~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~  221 (264)
T d1xqra1         158 Q----KLKVKSAFLLQNLLVGHPEHKGTLCSMG--MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV  221 (264)
T ss_dssp             H----HHHHHHHHHHHHHHHHCGGGHHHHHHTT--HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred             h----HHHHHHHHHHHHHHhccHHHHHHHHHhh--hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence            2    12455788999976 4688888888764  67888887777777778899999999998776653

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.3e-07  Score=82.97  Aligned_cols=194  Identities=19%  Similarity=0.204  Sum_probs=139.4

Q ss_pred             HHHHHh-ccCCCCHHHHHHHHHHHHhcCCCc-cchhhhhhcccchHHHHHHhhc-cC-ccchhhHHHHHHhcCCC-hhHH
Q 048744            5 LEELLG-FLCSPSPSVKKAAVDIVRGLTGSE-DGLQSLSKYSKIALPSLARLLS-EN-KEVSEPATEALVNLSQN-SELA   79 (312)
Q Consensus         5 l~ELv~-FL~~~~~~vR~~Al~~llgls~~~-~~~~~i~~~~~~~i~~L~~L~~-d~-~~~~~~Al~~LiNLS~d-~~~~   79 (312)
                      ++.|+. +|++++++||..|+..|-.++.+. ..+..+...  +.++.|+.++. +. +.+...|+.+|.|++.+ +...
T Consensus        60 ~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~--~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~  137 (264)
T d1xqra1          60 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL--GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL  137 (264)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhH
Confidence            556664 788999999999999999999864 445455443  68999999985 44 66889999999999854 6667


Q ss_pred             HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc-cchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhH
Q 048744           80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD-YGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHV  158 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~-~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~l  158 (312)
                      ..+.+.|.+..++..+.+++......++.+|.|++... .....+...+       .++.|+..+..++.    .--.+.
T Consensus       138 ~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-------~v~~L~~lL~~~~~----~~~~~a  206 (264)
T d1xqra1         138 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG-------MVQQLVALVRTEHS----PFHEHV  206 (264)
T ss_dssp             HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT-------HHHHHHHHHTSCCS----THHHHH
T ss_pred             HHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh-------hHHHHHHHHcCCCH----HHHHHH
Confidence            77778899999999999999888889999999997654 4444444322       36788888765533    234667


Q ss_pred             HHHHHhhcC-Chhhhhhhcccccc---hhhhhhhccc-CCchhhHhhHHHHHHhhhcc
Q 048744          159 GSILVNISK-KEAGRKILLDPKRG---LLKQIVRQFD-SSNYLRKKGVSGTIRNCCFE  211 (312)
Q Consensus       159 a~vl~NlS~-~~~gR~~~l~~~~~---~l~~ll~~~~-~~s~iRR~gva~~ikNccF~  211 (312)
                      ...|.|++. .|+++.-+...+-+   .+..+....+ ..+.......+.-|-+.||.
T Consensus       207 ~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~~~ll~~~~~  264 (264)
T d1xqra1         207 LGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC
Confidence            788999775 66777766554422   2232222222 24455566788888888884

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.1e-07  Score=81.36  Aligned_cols=159  Identities=14%  Similarity=0.154  Sum_probs=117.8

Q ss_pred             hHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc-cchHHH
Q 048744           47 ALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD-YGISSL  123 (312)
Q Consensus        47 ~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~-~~~~~l  123 (312)
                      .||.|+.+++++ +.+...|+.+|-|||. ++..++.+.+.|.|+.|++.+.++++.....++..|.||+..+ ++...+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            589999999888 8999999999999995 6889999999999999999999999999999999999999554 444444


Q ss_pred             hhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhhhhcccccc-hhhhhh------------hcc
Q 048744          124 LQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRG-LLKQIV------------RQF  190 (312)
Q Consensus       124 l~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~~~~-~l~~ll------------~~~  190 (312)
                      .+.+       .+..|+..+....+.   .-......++.|++..+..+..+...+-. ++..++            ...
T Consensus        83 ~~~g-------~v~~li~~l~~~~~~---~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  152 (457)
T d1xm9a1          83 RRQN-------GIREAVSLLRRTGNA---EIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSR  152 (457)
T ss_dssp             HHTT-------CHHHHHHHHTTCCCH---HHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC--------
T ss_pred             HHCC-------ChHHHHHHHhccCcH---HHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhc
Confidence            4432       367888877554221   12456788999999988887776654311 111111            112


Q ss_pred             cCCchhhHhhHHHHHHhhhccchhh
Q 048744          191 DSSNYLRKKGVSGTIRNCCFEAEHQ  215 (312)
Q Consensus       191 ~~~s~iRR~gva~~ikNccF~~~~H  215 (312)
                      .+.+...+..+++++.+++.+.+.+
T Consensus       153 ~~~~~~v~~~a~~~l~~~~~~~~~~  177 (457)
T d1xm9a1         153 EVVDPEVFFNATGCLRNLSSADAGR  177 (457)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhcCchHH
Confidence            3456667888999999999876665

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.38  E-value=0.0067  Score=44.88  Aligned_cols=86  Identities=20%  Similarity=0.182  Sum_probs=56.4

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      ..++.|+..|.++++.||..|+..|-.+.           . ...++.|..++.|. +.+...|+.+|-.+.        
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~-----------~-~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~--------   81 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQ-----------D-ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--------   81 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGC-----------S-HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcc-----------h-hhhHHHHHhhhccchhHHHHHHHHHHHHhC--------
Confidence            34677888888888888888887663221           1 14567777777777 777777888776553        


Q ss_pred             hhhhhHHHHHHHHHcCCCChhHHHHHHHH
Q 048744           82 MVQMGMIKTAMDLLYKPDSSITRLLVMLL  110 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLL  110 (312)
                        +.+.++.+...+.++++.....|...|
T Consensus        82 --~~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          82 --GERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             --SHHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             --ccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence              234566666677777766655555443

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.012  Score=48.89  Aligned_cols=96  Identities=7%  Similarity=0.015  Sum_probs=69.5

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM   82 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l   82 (312)
                      ..++|+.+|++++|.||..|+..|..+. +           +.+++.|..++.|. ..++..|+.+|.++......... 
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~-~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~-   86 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRG-G-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-   86 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHC-C-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhC-C-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc-
Confidence            4678999999999999999999886542 1           14678899999998 88899999999999765433222 


Q ss_pred             hhhhHHHHHHH-HHcCCCChhHHHHHHHHHhhcCC
Q 048744           83 VQMGMIKTAMD-LLYKPDSSITRLLVMLLVNLTQL  116 (312)
Q Consensus        83 ~~~~~i~~lv~-~i~~~~~~~ad~a~mLLsNLT~~  116 (312)
                          .+..+.. .+.++++.....++..|.++...
T Consensus        87 ----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~  117 (276)
T d1oyza_          87 ----VFNILNNMALNDKSACVRATAIESTAQRCKK  117 (276)
T ss_dssp             ----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHhcCCChhHHHHHHHHHHHHccc
Confidence                2233333 35567776777777777776543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.09  Score=48.68  Aligned_cols=95  Identities=15%  Similarity=0.196  Sum_probs=51.2

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCC--ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGS--EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~--~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      ++-+..++.++.++||..|+..+..+...  .+.....+-  +.+++.+..++.|. ..+...+..++..++..  +.+.
T Consensus       283 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~--~~~~  358 (588)
T d1b3ua_         283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM--SQILPCIKELVSDANQHVKSALASVIMGLSPI--LGKD  358 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH--HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH--HCHH
T ss_pred             hHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhH--HHHHHHHHHhhcCCChHHHHHHHHHHhhhhhc--cchh
Confidence            45567778888889999888887665433  111111111  14677788888777 55555555555444311  0000


Q ss_pred             hhhhhHHHHHHHHHcCCCChhH
Q 048744           82 MVQMGMIKTAMDLLYKPDSSIT  103 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~~~a  103 (312)
                      -....+++.+...+.++++...
T Consensus       359 ~~~~~l~p~l~~~l~d~~~~v~  380 (588)
T d1b3ua_         359 NTIEHLLPLFLAQLKDECPEVR  380 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhh
Confidence            0111344556666666555433

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.064  Score=54.00  Aligned_cols=105  Identities=14%  Similarity=0.142  Sum_probs=72.8

Q ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhh-hcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744            4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLS-KYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK   81 (312)
Q Consensus         4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~-~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~   81 (312)
                      ++-.|++=+.++.||+|..|+.-|...-..+...  +- ...+.+++.|++++.|. +.++..|+.||--+...-.  +.
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~--~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~--~~   79 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIK--LDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK--EY   79 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCS--CCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC--HH
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccc--cChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc--Hh
Confidence            4667888889999999999998777643221110  00 00124789999999999 8899999999977653311  11


Q ss_pred             hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhh
Q 048744           82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNL  113 (312)
Q Consensus        82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNL  113 (312)
                      .+ ..+++.++..+.++++...+.+++.|.++
T Consensus        80 ~~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i  110 (1207)
T d1u6gc_          80 QV-ETIVDTLCTNMLSDKEQLRDISSIGLKTV  110 (1207)
T ss_dssp             HH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHH
T ss_pred             hH-HHHHHHHHHHhcCCchhhhHHHHHHHHHH
Confidence            11 24677788888888888888888877654

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.047  Score=50.69  Aligned_cols=104  Identities=16%  Similarity=0.176  Sum_probs=70.0

Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhh
Q 048744            6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQ   84 (312)
Q Consensus         6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~   84 (312)
                      +.+.+++.++++.||+.|+..+..+...-.. +.+ .  +.+++.+..++.|. ..++..|+.+|.+++..-.  ..-..
T Consensus       167 ~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~-~~~-~--~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~--~~~~~  240 (588)
T d1b3ua_         167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLEL-DNV-K--SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP--QEDLE  240 (588)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH-HHH-H--HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC--HHHHH
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHHHhcH-HHH-H--HHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCC--HHHHH
Confidence            4466677899999999999998877654222 111 1  25778888899888 7888899999988863210  00011


Q ss_pred             hhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744           85 MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ  115 (312)
Q Consensus        85 ~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~  115 (312)
                      ...++.+...+.|+.+.....++..|.++..
T Consensus       241 ~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~  271 (588)
T d1b3ua_         241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQK  271 (588)
T ss_dssp             HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Confidence            2345667777778877766677777777653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=90.20  E-value=0.28  Score=40.04  Aligned_cols=101  Identities=8%  Similarity=0.095  Sum_probs=63.9

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHH-HHhhccC-ccchhhHHHHHHhcCCChhHHH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSL-ARLLSEN-KEVSEPATEALVNLSQNSELAG   80 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L-~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~   80 (312)
                      +.++.|+.+|++++++||..|+..|..+........       ..++.| ..++.+. +.+...|+.+|-++......  
T Consensus        50 ~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~-------~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~--  120 (276)
T d1oyza_          50 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI--  120 (276)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc-------chHHHHHHHHhcCCChhHHHHHHHHHHHHccccch--
Confidence            357889999999999999999999977754432211       223333 3345566 77889999999887643211  


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhc
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLT  114 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT  114 (312)
                        .....++.+...+.++.+.....++..+.+..
T Consensus       121 --~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~  152 (276)
T d1oyza_         121 --YSPKIVEQSQITAFDKSTNVRRATAFAISVIN  152 (276)
T ss_dssp             --GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             --hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc
Confidence              11245566666666666555545555555543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.05  E-value=0.091  Score=38.27  Aligned_cols=55  Identities=16%  Similarity=0.173  Sum_probs=43.8

Q ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHH
Q 048744            3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEAL   69 (312)
Q Consensus         3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~L   69 (312)
                      +.++.|+.+|+++++.||..|+..|-.+.            .+..++.|..++.|. +.+++.|+.+|
T Consensus        53 ~~~~~L~~~l~d~~~~VR~~a~~aL~~i~------------~~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          53 RAVEPLIKLLEDDSGFVRSGAARSLEQIG------------GERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHHHHHHHHHCCTHHHHHHHHHHHHHC------------SHHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             hhHHHHHhhhccchhHHHHHHHHHHHHhC------------ccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            45788999999999999999999885442            124677888888888 78888888776

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.15  E-value=1.3  Score=41.26  Aligned_cols=106  Identities=15%  Similarity=0.161  Sum_probs=65.4

Q ss_pred             chHHHHH-hccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC---ccchhhHHHHHHhcCCC--h
Q 048744            3 NELEELL-GFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN---KEVSEPATEALVNLSQN--S   76 (312)
Q Consensus         3 ~~l~ELv-~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~---~~~~~~Al~~LiNLS~d--~   76 (312)
                      .++.+++ .-+.++++++|+.|-+.|..+..+.         ..+++..|...+.+.   ..++.-|...|-|.-..  .
T Consensus         4 ~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~   74 (861)
T d2bpta1           4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDN---------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDS   74 (861)
T ss_dssp             HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC---------chHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccc
Confidence            3455554 3456889999999999997764221         124666777777554   34566777778787432  1


Q ss_pred             hHHHH--------hhh--hh-HHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744           77 ELAGK--------MVQ--MG-MIKTAMDLLYKPDSSITRLLVMLLVNLTQLD  117 (312)
Q Consensus        77 ~~~~~--------l~~--~~-~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~  117 (312)
                      .....        +-.  .. +-..++..+.++++.....++.+++.+.+.+
T Consensus        75 ~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~  126 (861)
T d2bpta1          75 VKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIE  126 (861)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            11111        111  12 2345677778888888888888888776543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.65  E-value=7.2  Score=32.91  Aligned_cols=112  Identities=11%  Similarity=0.063  Sum_probs=65.8

Q ss_pred             HHHHHhccC--CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHH
Q 048744            5 LEELLGFLC--SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAG   80 (312)
Q Consensus         5 l~ELv~FL~--~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~   80 (312)
                      ++.+++.+.  +++.+||..|+..+..+................+.+.+..++.+. ..++..|+.+|.++... +....
T Consensus       173 l~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  252 (458)
T d1ibrb_         173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME  252 (458)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT
T ss_pred             HHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            556677776  357899999999998876543221110011113566777777777 77888999999887532 22111


Q ss_pred             HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCC
Q 048744           81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQL  116 (312)
Q Consensus        81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~  116 (312)
                      .-+...+...+.....+........++..+..++..
T Consensus       253 ~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~  288 (458)
T d1ibrb_         253 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  288 (458)
T ss_dssp             TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            111122233444555566666666777777776543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.45  E-value=3.2  Score=36.49  Aligned_cols=182  Identities=13%  Similarity=0.078  Sum_probs=118.4

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCcc-----chhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhHH
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSED-----GLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELA   79 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~-----~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~   79 (312)
                      +..||.-|+.=.-+.|+.+..+..++-.-..     ..++|.+++ .++..|++-. +.+.++-.+=.+|-.....+.++
T Consensus        71 l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~-eil~~L~~gy-e~~eiAl~~G~mLREcik~e~la  148 (330)
T d1upka_          71 LSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ-NILFMLLKGY-ESPEIALNCGIMLRECIRHEPLA  148 (330)
T ss_dssp             HHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCT-HHHHHHHHGG-GSTTTHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCH-HHHHHHHhhc-CCcchhhhhhHHHHHHHhhHHHH
Confidence            5567777887778888888877766543322     224566654 5565555543 34677888888999999999999


Q ss_pred             HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHH-hhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhH
Q 048744           80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLV-NLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHV  158 (312)
Q Consensus        80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLs-NLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~l  158 (312)
                      ..++....+..+++++..|+-..|-.|...+- =||+++.-+..++..--   .. .....-.++.++.|-.+--++-.|
T Consensus       149 k~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Ny---d~-Ff~~~~~LL~s~NYVtrRqSlKLL  224 (330)
T d1upka_         149 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHY---DR-FFSEYEKLLHSENYVTKRQSLKLL  224 (330)
T ss_dssp             HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTH---HH-HHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhH---HH-HHHHHHHHhcCCchHHHHHHHHHH
Confidence            99999888889999999999776666655544 45888876666665321   11 233333444444443222235667


Q ss_pred             HHHHHhhcCChhhhhhhcccccchhhhhhhcccCCc
Q 048744          159 GSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSN  194 (312)
Q Consensus       159 a~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s  194 (312)
                      +.++.|=+-..--.+|+-++.  -++.++..+.++|
T Consensus       225 gelLldr~N~~vm~~Yvs~~~--nLkl~M~LLrd~s  258 (330)
T d1upka_         225 GELLLDRHNFTIMTKYISKPE--NLKLMMNLLRDKS  258 (330)
T ss_dssp             HHHHHSGGGHHHHHHHTTCHH--HHHHHHHHTTCSC
T ss_pred             HHHHhhhhHHHHHHHHhCCHH--HHHHHHHHhcCch
Confidence            777777666666666666665  3555555555555

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.81  E-value=9.1  Score=35.18  Aligned_cols=110  Identities=10%  Similarity=0.066  Sum_probs=64.0

Q ss_pred             HHHHhccC--CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hh-HHH
Q 048744            6 EELLGFLC--SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SE-LAG   80 (312)
Q Consensus         6 ~ELv~FL~--~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~-~~~   80 (312)
                      ..+++.+.  +++.+||..|+..+..+...-..........+.+++.|...+.+. ..+.+.|+.+|..+... +. +..
T Consensus       182 ~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  261 (861)
T d2bpta1         182 IAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKP  261 (861)
T ss_dssp             HHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444  468999999999887765442211100001113567777888777 77888999999888632 11 111


Q ss_pred             HhhhhhHHH-HHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744           81 KMVQMGMIK-TAMDLLYKPDSSITRLLVMLLVNLTQLD  117 (312)
Q Consensus        81 ~l~~~~~i~-~lv~~i~~~~~~~ad~a~mLLsNLT~~~  117 (312)
                      .+.  .++. .+.....+.++..+..++.+++.+....
T Consensus       262 ~l~--~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~  297 (861)
T d2bpta1         262 YME--QALYALTIATMKSPNDKVASMTVEFWSTICEEE  297 (861)
T ss_dssp             HHH--HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence            111  2222 2333445566677888888888876544

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.89  E-value=25  Score=34.19  Aligned_cols=60  Identities=13%  Similarity=0.188  Sum_probs=37.8

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHH
Q 048744            5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEAL   69 (312)
Q Consensus         5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~L   69 (312)
                      ++-|+..|++++++||..|+..+-.+...-...  ..   ..+++.|+..+.+. ......+..+|
T Consensus        47 ~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~--~~---~~l~~~L~~~l~~~~~~~r~~~~~~L  107 (1207)
T d1u6gc_          47 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV---ETIVDTLCTNMLSDKEQLRDISSIGL  107 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH---HHHHHHHHHHTTCSSSHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh--hH---HHHHHHHHHHhcCCchhhhHHHHHHH
Confidence            566888999999999999999887775442211  11   14677777665444 33333333333