Citrus Sinensis ID: 048751
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1004 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9U0 | 991 | Pentatricopeptide repeat- | yes | no | 0.909 | 0.921 | 0.651 | 0.0 | |
| Q9LS88 | 842 | Pentatricopeptide repeat- | no | no | 0.712 | 0.849 | 0.378 | 1e-154 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.532 | 0.653 | 0.273 | 1e-53 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.794 | 0.717 | 0.230 | 1e-46 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.561 | 0.741 | 0.243 | 8e-46 | |
| Q8RWS8 | 822 | Pentatricopeptide repeat- | no | no | 0.555 | 0.678 | 0.239 | 3e-45 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.657 | 0.865 | 0.232 | 6e-44 | |
| Q940A6 | 838 | Pentatricopeptide repeat- | no | no | 0.514 | 0.616 | 0.251 | 8e-43 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.611 | 0.776 | 0.242 | 1e-42 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.523 | 0.704 | 0.237 | 2e-42 |
| >sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1233 bits (3190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/927 (65%), Positives = 731/927 (78%), Gaps = 14/927 (1%)
Query: 70 PNRRGPRVSGGFKLQCNSKSTIS--PTKSSLVN--SRRKKYGGILPSLLRSFESNDDIDN 125
P RVS +L C + S+ S P + S N SR++KYGG++PS+LRS +S+ DI+
Sbjct: 42 PCNFSSRVSFKLQLHCAASSSSSVSPPRCSKPNPSSRKRKYGGVIPSILRSLDSSTDIET 101
Query: 126 TLNSFCENLSPKEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKW 185
TL S C NLSPKEQTV+LKEQ WERV+RVF FF+S + YVPNVIHYNIVLRALGRA KW
Sbjct: 102 TLASLCLNLSPKEQTVLLKEQTRWERVLRVFRFFQSHQSYVPNVIHYNIVLRALGRAGKW 161
Query: 186 DELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTV 245
DELRL WIEMA NGVLPTNNTYGMLVDVYGKAGL+KEALLWIKHM R FPDEVTM TV
Sbjct: 162 DELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLVKEALLWIKHMGQRMHFPDEVTMATV 221
Query: 246 VRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDL-----GSMPVSFKHFLSTELFR 300
VRV K GEFD ADRF+K WC G+++LD LDS DD PV+ K FLS ELF+
Sbjct: 222 VRVFKNSGEFDRADRFFKGWCAGKVDLD---LDSIDDFPKNGSAQSPVNLKQFLSMELFK 278
Query: 301 TGGRNPISRNMGLLDMGNSV-RKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAV 359
G RNPI +++ +S RKPRLTST+NTLIDLYGKAGRL DAAN+F+EMLKSGV +
Sbjct: 279 VGARNPIEKSLHFASGSDSSPRKPRLTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPI 338
Query: 360 DTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYY 419
DT+TFNTMI+TCG+HG+LSEAE+L MEE ISPDTKTYNILLSL+AD G+I AAL YY
Sbjct: 339 DTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYY 398
Query: 420 WKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINE 479
KIR+VGLFPD+VT RA+LHILCQR MV E EAVI EM++ + IDEHSVP +M+MY+NE
Sbjct: 399 RKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNE 458
Query: 480 GLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEY 539
GL+ QAK +F++ QLD LSS TLAA+IDVYAEKGLW EAETVFYGKR++ GQ+ V+EY
Sbjct: 459 GLVVQAKALFERFQLDCVLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEY 518
Query: 540 NVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQG 599
NVMIKAYGK+KL++KA SLFK MKN GTWPDECTYNSL QM AG DL+ +A +LAEM
Sbjct: 519 NVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLD 578
Query: 600 AGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEE 659
+G KP C T++++IA+Y RLG LS+AVDL+ M + GV+PNEVVYGSLINGFA +G VEE
Sbjct: 579 SGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEE 638
Query: 660 ALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719
A+QYFRMM E G+ +N IVLTSLIKAYSK+GCLE A++VY+KMK+ EGGPD ASN+M+S
Sbjct: 639 AIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAASNSMLS 698
Query: 720 LYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD 779
L A+LG+V+EAES+FN +REKG D +SFA MMYLYK MGMLDEAI+ AEEM+ SGLL D
Sbjct: 699 LCADLGIVSEAESIFNALREKGTCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLSD 758
Query: 780 VISYNQVMACFATNGQLRQCGELLHEMLTQ-KLLPDNGTFKVLFTILKKGGFPIEAVKQL 838
S+NQVMAC+A +GQL +C EL HEML + KLL D GTFK LFT+LKKGG P EAV QL
Sbjct: 759 CTSFNQVMACYAADGQLSECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAVSQL 818
Query: 839 QSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGK 898
Q++Y E KP A+ AI +++S +GL A AL +C+ L E + F YN IY + +SG
Sbjct: 819 QTAYNEAKPLATPAITATLFSAMGLYAYALESCQELTSGEIPREHFAYNAVIYTYSASGD 878
Query: 899 NDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKA 958
D AL +M+M ++GLEPDIVT LVG YGKAG+VEGVKR+HS+L +G++EP+++LFKA
Sbjct: 879 IDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRLTFGELEPSQSLFKA 938
Query: 959 VIDAYRNANREDLADLACQEMRTAFES 985
V DAY +ANR+DLAD+ +EM AFE+
Sbjct: 939 VRDAYVSANRQDLADVVKKEMSIAFEA 965
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1408), Expect = e-154, Method: Compositional matrix adjust.
Identities = 290/767 (37%), Positives = 463/767 (60%), Gaps = 52/767 (6%)
Query: 100 NSRRKKYGGILPSLLRSFESNDDIDNTLNSFCENLSPKEQTVVLKEQKSWERVIRVFEFF 159
+++R YGG +P++L + +S +D+++ L+ + E LS KE+T++LKEQ WER + +FE+F
Sbjct: 118 STKRLSYGGCIPAILEALDSIEDVEDALSPWAERLSNKERTIILKEQIHWERAVEIFEWF 177
Query: 160 KSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGL 219
KS+ Y NVIHYNI+LR LG+A KW ++ W EM + G+ P N+TYG L+DVY K GL
Sbjct: 178 KSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYSKGGL 237
Query: 220 IKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDS 279
AL W+ M G+ PDEVT V+++ K+ EF A+ F+K W D+ + DS
Sbjct: 238 KVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKW-----SCDENKADS 292
Query: 280 TDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKA 339
L S TYNT+ID YGK+
Sbjct: 293 HVCLSSY-----------------------------------------TYNTMIDTYGKS 311
Query: 340 GRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTY 399
G++++A+ F ML+ G+ T+TFNTMI+ G++G L E +L M+ +PDT+TY
Sbjct: 312 GQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMK-LHCAPDTRTY 370
Query: 400 NILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEK 459
NIL+SL+ +I A Y+ ++++ GL PD V+ R +L+ R+MV+EAE +I EM+
Sbjct: 371 NILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDD 430
Query: 460 CGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEA 519
+ IDE++ + +MY+ +L ++ FK+ + G +SS+ +A ID Y E+G +EA
Sbjct: 431 DNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGNMSSEGYSANIDAYGERGYLSEA 490
Query: 520 ETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQ 579
E VF +++ K++V+EYNVMIKAYG SK +KA LF+ M + G PD+CTYN+LVQ
Sbjct: 491 ERVFICCQEV--NKRTVIEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQ 548
Query: 580 MFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEP 639
+ A D+ + L +M+ G+ C+ + +VI+++ +LGQL+ A +++ EM +EP
Sbjct: 549 ILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEP 608
Query: 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVY 699
+ VVYG LIN FA TG V++A+ Y M+E G+ N ++ SLIK Y+K+G L+ A+ +Y
Sbjct: 609 DVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIY 668
Query: 700 EKMKEMEGG---PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756
K+ + PD SN MI+LY+E MV +AE++F+ ++++G+ + +FA M+ +YK
Sbjct: 669 RKLLQSCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQRGEANEFTFAMMLCMYK 728
Query: 757 TMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG 816
G +EA A++M+ +L D +SYN V+ FA +G+ ++ E EM++ + PD+
Sbjct: 729 KNGRFEEATQIAKQMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDS 788
Query: 817 TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGL 863
TFK L TIL K G +AV++++ ++ E I+++ S+VG+
Sbjct: 789 TFKSLGTILMKLGMSKKAVRKIEEIRKKEIKRGLELWISTLSSLVGI 835
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 154/563 (27%), Positives = 264/563 (46%), Gaps = 28/563 (4%)
Query: 149 WERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYG 208
W ++ + E KS P+ YN ++ R E + EM G TY
Sbjct: 260 WNKITSLVEKMKSD-GIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYN 318
Query: 209 MLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLG 268
L+DVYGK+ KEA+ + M L G P VT N+++ G D A
Sbjct: 319 ALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEA---------- 368
Query: 269 RLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLD-MGNSVRKPRLTS 327
+EL + + G+ P F + F G+ + M + + M N+ KP +
Sbjct: 369 -MELKN----QMAEKGTKPDVFTYTTLLSGFERAGK--VESAMSIFEEMRNAGCKPNIC- 420
Query: 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMM 387
T+N I +YG G+ + +F E+ G++ D +T+NT++ G +G SE +F M
Sbjct: 421 TFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480
Query: 388 EESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMV 447
+ + P+ +T+N L+S Y+ G+ A+ Y ++ + G+ PD T +L L + M
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMW 540
Query: 448 QEAEAVIIEMEKCGLHIDEHSVPGVMKMYINE---GLLHQ-AKIIFKKCQLDGGLSSKTL 503
+++E V+ EME +E + ++ Y N GL+H A+ ++ + KTL
Sbjct: 541 EQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTL 600
Query: 504 AAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMK 563
+ V ++ L EAE F ++ G + N M+ YG+ ++ KA + MK
Sbjct: 601 ---VLVCSKCDLLPEAERAFSELKER-GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMK 656
Query: 564 NLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLS 623
G P TYNSL+ M + G++ ++L E+ G KP +++++VI AY R ++
Sbjct: 657 ERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMR 716
Query: 624 NAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLI 683
+A +F EMR +G+ P+ + Y + I +AA EEA+ R M + G NQ S++
Sbjct: 717 DASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIV 776
Query: 684 KAYSKIGCLEGAKQVYEKMKEME 706
Y K+ + AK E ++ ++
Sbjct: 777 DGYCKLNRKDEAKLFVEDLRNLD 799
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 209/906 (23%), Positives = 379/906 (41%), Gaps = 108/906 (11%)
Query: 165 YVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEAL 224
+ P++ Y+ ++ LG+ + D + EM G+ P T+ + + V G+AG I EA
Sbjct: 219 FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAY 278
Query: 225 LWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLE----LDST 280
+K M G PD VT ++ L + D A ++ GR + D + LD
Sbjct: 279 EILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRF 338
Query: 281 DDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAG 340
D + S K F S +M P + T+ L+D KAG
Sbjct: 339 SDNRDLD-SVKQFWS-------------------EMEKDGHVPDVV-TFTILVDALCKAG 377
Query: 341 RLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYN 400
+A + M G+ + T+NT+I L +A LF ME + P TY
Sbjct: 378 NFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYI 437
Query: 401 ILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKC 460
+ + Y G+ +AL + K++ G+ P+ V A L+ L + +EA+ + ++
Sbjct: 438 VFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDI 497
Query: 461 GLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLA--AIIDVYAEKGLWAE 518
GL D + +MK Y G + +A + + ++ G + ++I+ + E
Sbjct: 498 GLVPDSVTYNMMMKCYSKVGEIDEAIKLLSE-MMENGCEPDVIVVNSLINTLYKADRVDE 556
Query: 519 AETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLV 578
A +F +++ K +VV YN ++ GK+ +A LF+ M G P+ T+N+L
Sbjct: 557 AWKMFMRMKEM-KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLF 615
Query: 579 QMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVE 638
D + A+ +L +M G P T++++I + GQ+ A+ FH+M++ V
Sbjct: 616 DCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VY 674
Query: 639 PNEVVYGSLINGFAATGKVEEALQYF---------------------RMMRECG------ 671
P+ V +L+ G +E+A + ++ E G
Sbjct: 675 PDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVS 734
Query: 672 ----LWANQI------VLTSLIKAYSKIGCLEGAKQVYEKM-KEMEGGPDTVASNTMISL 720
L AN I +L +I+ K + GA+ ++EK K++ P N +I
Sbjct: 735 FSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGG 794
Query: 721 YAELGMVTEAESMFNDIREKGQV-DAVSFAAMMYLYKTMGMLDEAIDAAEEMK------- 772
E M+ A+ +F ++ G + D ++ ++ Y G +DE + +EM
Sbjct: 795 LLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEAN 854
Query: 773 -------LSGLLR------------DVIS----------YNQVMACFATNGQLRQCGELL 803
+SGL++ D++S Y ++ + +G+L + +L
Sbjct: 855 TITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLF 914
Query: 804 HEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQE-VKP-YASEAIITSVYSVV 861
ML P+ + +L K G A + +E V+P + +++ +V
Sbjct: 915 EGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMV 974
Query: 862 GLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKM-LDQGLEPDIVT 920
G L + L ++ D YN+ I S + ++AL F +M +G+ PD+ T
Sbjct: 975 GRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYT 1034
Query: 921 CINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMR 980
+L+ G AG+VE +I+++++ +EPN F A+I Y + + + A Q M
Sbjct: 1035 YNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1094
Query: 981 TAFESP 986
T SP
Sbjct: 1095 TGGFSP 1100
|
Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 151/620 (24%), Positives = 274/620 (44%), Gaps = 56/620 (9%)
Query: 196 AKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEF 255
+N +P + L V G+++EA+ MK +FP + N ++ ++G+
Sbjct: 184 TRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKT 243
Query: 256 DSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLD 315
D RF+KD +G G+ P F
Sbjct: 244 DDVKRFFKDM-IGA--------------GARPTVF------------------------- 263
Query: 316 MGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHG 375
TYN +ID K G ++ A +F EM G+ DT+T+N+MI G G
Sbjct: 264 ------------TYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG 311
Query: 376 NLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQR 435
L + F M++ PD TYN L++ + G + L +Y +++ GL P+ V+
Sbjct: 312 RLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYS 371
Query: 436 AILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQA-KIIFKKCQL 494
++ C+ M+Q+A ++M + GL +E++ ++ G L A ++ + Q+
Sbjct: 372 TLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQV 431
Query: 495 DGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDK 554
+ T A+ID + EAE +F GK D G ++ YN +I + K+K D+
Sbjct: 432 GVEWNVVTYTALIDGLCDAERMKEAEELF-GKMDTAGVIPNLASYNALIHGFVKAKNMDR 490
Query: 555 AFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIA 614
A L +K G PD Y + + + + A ++ EM+ G K L +++++
Sbjct: 491 ALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMD 550
Query: 615 AYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYF-RMMRECGLW 673
AY + G + + L EM+ +E V + LI+G V +A+ YF R+ + GL
Sbjct: 551 AYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQ 610
Query: 674 ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESM 733
AN + T++I K +E A ++E+M + PD A +++ + G V EA ++
Sbjct: 611 ANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALAL 670
Query: 734 FNDIREKG-QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT 792
+ + E G ++D +++ ++++ L +A EEM G+ D + V+
Sbjct: 671 RDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYE 730
Query: 793 NGQLRQCGELLHEMLTQKLL 812
G + + EL ++ +LL
Sbjct: 731 LGCIDEAVELQSYLMKHQLL 750
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 143/598 (23%), Positives = 283/598 (47%), Gaps = 40/598 (6%)
Query: 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMM 387
TY+ LI+ +G+AG+ + A N+ +ML++ +A T+N +I CGS GN EA + M
Sbjct: 180 TYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKM 239
Query: 388 EESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMV 447
++ + PD T+NI+LS Y + AL Y+ ++ + PD+ T I++ L +
Sbjct: 240 TDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQS 299
Query: 448 QEAEAVIIEM--EKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLA- 504
+A + M ++ D + +M +Y +G + + +F+ + GL ++
Sbjct: 300 SQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFE-AMVAEGLKPNIVSY 358
Query: 505 -AIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMK 563
A++ YA G+ A +V G G VV Y ++ +YG+S+ KA +F +M+
Sbjct: 359 NALMGAYAVHGMSGTALSVL-GDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMR 417
Query: 564 NLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLS 623
P+ TYN+L+ + + +AV++ +M+ G KP ++ +++AA +R +
Sbjct: 418 KERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKV 477
Query: 624 NAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLI 683
N + + G+ N Y S I + ++E+A+ ++ MR+ + A+ + T LI
Sbjct: 478 NVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILI 537
Query: 684 KAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG-Q 742
++ A ++M+++ ++++ Y++ G VTEAES+FN ++ G +
Sbjct: 538 SGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCE 597
Query: 743 VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGEL 802
D +++ +M++ Y +A + EM+ +G+ D I+ + +M F GQ +
Sbjct: 598 PDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVF-V 656
Query: 803 LHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVG 862
L +++ +K +P G V F I ++ K+ Q + PY
Sbjct: 657 LMDLMREKEIPFTGA--VFFEIFSACN-TLQEWKRAIDLIQMMDPY-------------- 699
Query: 863 LNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVT 920
L +L++G + N ++ F SGK + + F K++ G+ ++ T
Sbjct: 700 LPSLSIG---------------LTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKT 742
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 168/723 (23%), Positives = 308/723 (42%), Gaps = 63/723 (8%)
Query: 134 LSPKEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWI 193
L PK T V+K QK + + +F + + + + Y V+ LG K++ + +
Sbjct: 5 LLPKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLV 64
Query: 194 EMAKN-GVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEV 252
+M +N G Y + YG+ G ++EA+ + M P + N ++ VL +
Sbjct: 65 DMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDS 124
Query: 253 GEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMG 312
G FD A + Y + + D + T D+ S + K F T R
Sbjct: 125 GYFDQAHKVY-------MRMRDRGI--TPDVYSFTIRMKSFCKTSRPHAALR-------- 167
Query: 313 LLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCG 372
LL+ +S Y T++ + + + +F +ML SGV++ TFN ++
Sbjct: 168 LLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLC 227
Query: 373 SHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSV 432
G++ E E L + + + P+ TYN+ + G ++ A+R + E G PD +
Sbjct: 228 KKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVI 287
Query: 433 TQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKC 492
T +++ LC+ + QEAE + +M GL D ++ ++ Y G++ A+ I
Sbjct: 288 TYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDA 347
Query: 493 QLDGGLSSK-TLAAIIDVYAEKGLWAEAETVF---YGKRDLVGQKKSVVEYNVMIKAYGK 548
+G + + T ++ID +G A +F GK G K +V+ YN +IK
Sbjct: 348 VFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGK----GIKPNVILYNTLIKGLSN 403
Query: 549 SKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLT 608
+ +A L M G P+ T+N LV + A L+ M G+ P T
Sbjct: 404 QGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFT 463
Query: 609 FSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMR 668
F+ +I Y+ ++ NA+++ M GV+P+ Y SL+NG T K E+ ++ ++ M
Sbjct: 464 FNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMV 523
Query: 669 ECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVT 728
E G N L+++ + L+ A + E+MK PD V T+I + + G +
Sbjct: 524 EKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLD 583
Query: 729 EAESMFNDIREKGQVDAVS----------------------FAAMM--------YLYKTM 758
A ++F + E +V + + F M+ Y Y+ M
Sbjct: 584 GAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLM 643
Query: 759 -------GMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKL 811
G ++ EM +G + + + +V+ C ++ + ++H M+ + L
Sbjct: 644 VDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGL 703
Query: 812 LPD 814
+P+
Sbjct: 704 VPE 706
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 176 bits (446), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 152/605 (25%), Positives = 250/605 (41%), Gaps = 88/605 (14%)
Query: 167 PNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLW 226
PNV+ +N V+ LG ++DE + +M + G+ PT TY +LV +A I +A
Sbjct: 306 PNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFV 365
Query: 227 IKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSM 286
+K M +G P+ + N ++ E G + A +E+ DL
Sbjct: 366 LKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKA-----------IEIKDLM---------- 404
Query: 287 PVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAA 346
+S+ + L +STYNTLI Y K G+ +A
Sbjct: 405 --------------------VSKGLSLT-----------SSTYNTLIKGYCKNGQADNAE 433
Query: 347 NVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLY 406
+ EML G V+ +F ++I SH A M +SP L+S
Sbjct: 434 RLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGL 493
Query: 407 ADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDE 466
G + AL +++ G D+ T A+LH LC+ + EA + E+ G +D
Sbjct: 494 CKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDR 553
Query: 467 HSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGK 526
S ++ + L +A + +D ++GL + T
Sbjct: 554 VSYNTLISGCCGKKKLDEAFMF------------------LDEMVKRGLKPDNYT----- 590
Query: 527 RDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDL 586
Y+++I ++A + K G PD TY+ ++ +
Sbjct: 591 ------------YSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 638
Query: 587 MGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGS 646
+ + EM +P + ++ +I AY R G+LS A++L +M+ G+ PN Y S
Sbjct: 639 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTS 698
Query: 647 LINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEME 706
LI G + +VEEA F MR GL N T+LI Y K+G + + + +M
Sbjct: 699 LIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKN 758
Query: 707 GGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV-DAVSFAAMMYLYKTMGMLDEAI 765
P+ + MI YA G VTEA + N++REKG V D++++ +Y Y G + EA
Sbjct: 759 VHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAF 818
Query: 766 DAAEE 770
++E
Sbjct: 819 KGSDE 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 155/639 (24%), Positives = 286/639 (44%), Gaps = 25/639 (3%)
Query: 191 RWIEMAKNG---VLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVR 247
R+ MA+ G V P TYG+L+ +AG + + ++ +G D + +++
Sbjct: 71 RYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLK 130
Query: 248 VLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPI 307
L AD+ D D+ L +LG +P F + + L N
Sbjct: 131 GL-------CADKRTSDAM-------DIVLRRMTELGCIPNVFSY--NILLKGLCDENRS 174
Query: 308 SRNMGLLDMGNSVR---KPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITF 364
+ LL M R P +Y T+I+ + K G A + + EML G+ D +T+
Sbjct: 175 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 234
Query: 365 NTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIRE 424
N++I + +A + M ++ + PD TYN +L Y G A+ + K+R
Sbjct: 235 NSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS 294
Query: 425 VGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQ 484
G+ PD VT ++ LC+ EA + M K GL + + +++ Y +G L +
Sbjct: 295 DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVE 354
Query: 485 AKIIFKKCQLDGGLSSKTLAAI-IDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMI 543
+ +G + +I I YA++G +A VF R G + V Y +I
Sbjct: 355 MHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQ-QGLNPNAVTYGAVI 413
Query: 544 KAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFK 603
KS + A F+ M + G P YNSL+ + +A +L+ EM G
Sbjct: 414 GILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGIC 473
Query: 604 PQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQY 663
+ F+S+I ++ + G++ + LF M R GV+PN + Y +LING+ GK++EA++
Sbjct: 474 LNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKL 533
Query: 664 FRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE 723
M GL N + ++LI Y KI +E A ++++M+ PD + N ++ +
Sbjct: 534 LSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593
Query: 724 LGMVTEAESMFNDIREKG-QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVIS 782
A+ ++ I E G Q++ ++ +++ + D+A+ + + L L + +
Sbjct: 594 TRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEART 653
Query: 783 YNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVL 821
+N ++ G+ + +L + L+P+ T++++
Sbjct: 654 FNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLM 692
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 146/614 (23%), Positives = 265/614 (43%), Gaps = 88/614 (14%)
Query: 328 TYNTLIDLYGKAGR-LQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCM 386
+YN ++D ++ R + A NVF EML+S V+ + T+N +I GN+ A LF
Sbjct: 171 SYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDK 230
Query: 387 MEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNM 446
ME P+ TYN L+ Y + I+ + + GL P+ ++ +++ LC+
Sbjct: 231 METKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGR 290
Query: 447 VQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAI 506
++E V+ EM + G +DE + ++K Y EG HQA
Sbjct: 291 MKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA--------------------- 329
Query: 507 IDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLG 566
L AE + + G SV+ Y +I + K+ ++A M+ G
Sbjct: 330 --------LVMHAEMLRH------GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 567 TWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAV 626
P+E TY +LV F+ M +A +L EM GF P +T++++I + G++ +A+
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435
Query: 627 DLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAY 686
+ +M+ G+ P+ V Y ++++GF + V+EAL+ R M E G+ + I +SLI+ +
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 687 SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAV 746
+ + A +YE+M + PD +I+ Y G + +A + N++ EK
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK------ 549
Query: 747 SFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEM 806
G+L DV++Y+ ++ + R+ LL ++
Sbjct: 550 ----------------------------GVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581
Query: 807 LTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNAL 866
++ +P + T+ L IE ++ + S + + + G+
Sbjct: 582 FYEESVPSDVTYHTL----------IENCSNIE--------FKSVVSLIKGFCMKGMMTE 623
Query: 867 ALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVG 926
A E+++ D YN+ I+ +G KA + +M+ G VT I LV
Sbjct: 624 ADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVK 683
Query: 927 CYGKAGLVEGVKRI 940
K G V + +
Sbjct: 684 ALHKEGKVNELNSV 697
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1004 | ||||||
| 225447241 | 1008 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.971 | 0.685 | 0.0 | |
| 147771903 | 1313 | hypothetical protein VITISV_031421 [Viti | 0.975 | 0.745 | 0.685 | 0.0 | |
| 255553861 | 1029 | pentatricopeptide repeat-containing prot | 0.983 | 0.959 | 0.673 | 0.0 | |
| 449447783 | 1020 | PREDICTED: pentatricopeptide repeat-cont | 0.984 | 0.968 | 0.622 | 0.0 | |
| 449525162 | 1026 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.984 | 0.962 | 0.620 | 0.0 | |
| 15219527 | 991 | pentatricopeptide repeat-containing prot | 0.909 | 0.921 | 0.651 | 0.0 | |
| 224124604 | 810 | predicted protein [Populus trichocarpa] | 0.800 | 0.992 | 0.729 | 0.0 | |
| 297839237 | 989 | pentatricopeptide repeat-containing prot | 0.882 | 0.895 | 0.660 | 0.0 | |
| 356528730 | 963 | PREDICTED: pentatricopeptide repeat-cont | 0.911 | 0.950 | 0.609 | 0.0 | |
| 357491817 | 981 | Pentatricopeptide repeat-containing prot | 0.883 | 0.904 | 0.578 | 0.0 |
| >gi|225447241|ref|XP_002272784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1392 bits (3604), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/1003 (68%), Positives = 815/1003 (81%), Gaps = 24/1003 (2%)
Query: 3 HCYSSRELGHESLQHHF----FSPSKLHILHSPFKAGVFAGSINLHHKTCAKRQNVDPGL 58
+ YSSRELG E LQ F FSP KL L S + F G N H + AK N L
Sbjct: 5 YSYSSRELGREKLQSPFQSLLFSPCKLQTLQSSYGNRDFWG-FNFHSQNLAKSLNCTFRL 63
Query: 59 DI--------IVKN--SHTQKP--NRRGPRVSGGFKLQCNSKSTISPTKSSLVNSRRKKY 106
+ + +N SHTQK N RG RV GFKLQC+S++ PTK+S ++ R+KKY
Sbjct: 64 TLSSSKIDKSLGRNAYSHTQKQRLNPRGARVFPGFKLQCHSRTVALPTKTS-ISRRKKKY 122
Query: 107 GGILPSLLRSFESNDDIDNTLNSFCENLSPKEQTVVLKEQKSWERVIRVFEFFKSQKDYV 166
G+LPS+LR+ ES ++I++TL+S C LSPKEQTV+LKEQ SWERV+RVFE+ KSQ+DYV
Sbjct: 123 SGVLPSILRALESENNIEDTLSS-CGKLSPKEQTVILKEQSSWERVLRVFEWIKSQEDYV 181
Query: 167 PNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLW 226
PNVIHYN+VLR LGRAQKWDELRL WIEMAKNGVLPTNNTYGMLVDVYGKAGL+KEALLW
Sbjct: 182 PNVIHYNVVLRVLGRAQKWDELRLCWIEMAKNGVLPTNNTYGMLVDVYGKAGLVKEALLW 241
Query: 227 IKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLEL----DSTDD 282
IKHMKLRG+FPDEV MNTVVRVLK+ GEFD ADRFY+DWC+G++EL D +L DS D+
Sbjct: 242 IKHMKLRGVFPDEVAMNTVVRVLKDAGEFDWADRFYRDWCVGKVELGDFDLESVADSDDE 301
Query: 283 LGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRL 342
+GS PVS KHFLSTELF+ GGR PIS M + S RKPRLT+TYNTLIDLYGKAGRL
Sbjct: 302 IGSAPVSLKHFLSTELFKIGGRRPISNIMDSSNTDGSRRKPRLTATYNTLIDLYGKAGRL 361
Query: 343 QDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNIL 402
+DAA+VFAEMLK GVA+DTITFNTMIYTCGSHG+LSEAE L MEE ISPDTKTYNI
Sbjct: 362 KDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLTEMEERGISPDTKTYNIF 421
Query: 403 LSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGL 462
LSLYAD GNI+AAL+ Y KIREVGLFPD VT RA+LH+LC+RNMV E E VI EM++ +
Sbjct: 422 LSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLHVLCERNMVGEVETVIAEMKRSRV 481
Query: 463 HIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETV 522
+DEHS+P V+KMY+NEGLL +AKI ++ L+ LSS+T AIID YAEKGLWAEAE V
Sbjct: 482 RVDEHSIPVVIKMYVNEGLLDKAKIFLEEHLLEDELSSRTRVAIIDAYAEKGLWAEAENV 541
Query: 523 FYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFA 582
F GKRDL GQKK VVEYNVM+KAYGK+KLYDKAFSLFK M+N GTWP+E TYNSL+QMF+
Sbjct: 542 FIGKRDL-GQKKDVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNESTYNSLIQMFS 600
Query: 583 GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEV 642
GGDL+ +A +LAEMQ GFKPQCLTFS+VIA YARLG+L +AV ++ EM R GV+PNEV
Sbjct: 601 GGDLVDEARGILAEMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEV 660
Query: 643 VYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKM 702
VYGSLINGF+ TG VEEAL YFR M E G+ ANQIVLTSLIKAYSK+GCLEGAK +YE M
Sbjct: 661 VYGSLINGFSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGM 720
Query: 703 KEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD 762
K++EGGPD VASN+MI+LYA+LG+V+EA+ +F+D+R+KG D VSFA MMYLYK +GMLD
Sbjct: 721 KDLEGGPDIVASNSMINLYADLGLVSEAKLIFDDLRQKGSADGVSFATMMYLYKNLGMLD 780
Query: 763 EAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLF 822
EAID A+EMK SGLLRD S+N+VMAC+ATNGQL CGELLHEM+++++LPD GTFKV+F
Sbjct: 781 EAIDVADEMKQSGLLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMF 840
Query: 823 TILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLD 882
T+LKKGG P EAV QL+SSYQE KPYA +A+ITSV+S VGL+A AL +CET + AE LD
Sbjct: 841 TVLKKGGLPTEAVTQLESSYQEGKPYARQAVITSVFSTVGLHAFALESCETFLNAEVDLD 900
Query: 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHS 942
S YNVAIYA+ +SG DKAL FMKM D+GLEPD+VT INL GCYGKAG++EG+KRI+S
Sbjct: 901 SSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGLKRIYS 960
Query: 943 QLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTAFES 985
QLKY ++EPNE+LFKA+IDAYR+A R DLA+L QEM+ AF++
Sbjct: 961 QLKYREIEPNESLFKAIIDAYRSAKRHDLAELVSQEMKFAFDT 1003
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771903|emb|CAN75708.1| hypothetical protein VITISV_031421 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1389 bits (3594), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/1003 (68%), Positives = 814/1003 (81%), Gaps = 24/1003 (2%)
Query: 3 HCYSSRELGHESLQHHF----FSPSKLHILHSPFKAGVFAGSINLHHKTCAKRQNVDPGL 58
+ YSSRELG E LQ F FSP KL L S + F G N H + AK N L
Sbjct: 310 YSYSSRELGREKLQSPFQSLLFSPCKLQTLQSSYGNRDFWG-FNFHSQNLAKSLNCTFRL 368
Query: 59 DI--------IVKN--SHTQKP--NRRGPRVSGGFKLQCNSKSTISPTKSSLVNSRRKKY 106
+ + +N SHTQK N RG RV GFKLQC+S++ PTK+S ++ R+KKY
Sbjct: 369 TLSSXKIDKSLGRNAYSHTQKQRLNPRGARVFPGFKLQCHSRTVALPTKTS-ISRRKKKY 427
Query: 107 GGILPSLLRSFESNDDIDNTLNSFCENLSPKEQTVVLKEQKSWERVIRVFEFFKSQKDYV 166
G+LPS+LR+ ES +I++TL+S C LSPKEQTV+LKEQ SWERV+RVFE+ KSQ+DYV
Sbjct: 428 SGVLPSILRALESEXNIEDTLSS-CGKLSPKEQTVILKEQSSWERVLRVFEWIKSQEDYV 486
Query: 167 PNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLW 226
PNVIHYN+VLR LGRAQKWDELRL WIEMAKNGVLPTNNTYGMLVDVYGKAGL+KEALLW
Sbjct: 487 PNVIHYNVVLRVLGRAQKWDELRLCWIEMAKNGVLPTNNTYGMLVDVYGKAGLVKEALLW 546
Query: 227 IKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLEL----DSTDD 282
IKHMKLRG+FPDEVTMNTVVRVLK+ GEFD ADRFY+DWC+G++EL D +L DS D+
Sbjct: 547 IKHMKLRGVFPDEVTMNTVVRVLKDAGEFDWADRFYRDWCVGKVELGDFDLESVADSDDE 606
Query: 283 LGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRL 342
+GS PVS KHFLSTELF+ GGR PIS M + S KPRLT+TYNTLIDLYGKAGRL
Sbjct: 607 IGSAPVSLKHFLSTELFKIGGRRPISNIMDSSNTDGSRHKPRLTATYNTLIDLYGKAGRL 666
Query: 343 QDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNIL 402
+DAA+VFAEMLK GVA+DTITFNTMIYTCGSHG+LSEAE L MEE ISPDTKTYNI
Sbjct: 667 KDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLTEMEERGISPDTKTYNIF 726
Query: 403 LSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGL 462
LSLYAD GNI+AAL+ Y KIREVGLFPD VT RA+LH+LC+RNMV E E VI EM++ +
Sbjct: 727 LSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLHVLCERNMVGEVETVIAEMKRSRV 786
Query: 463 HIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETV 522
+DEHS+P V+KMY+NEGLL +AKI ++ L+ LSS+T AIID YAEKGLWAEAE V
Sbjct: 787 RVDEHSIPVVIKMYVNEGLLDKAKIFLEEHLLEDELSSRTRVAIIDAYAEKGLWAEAENV 846
Query: 523 FYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFA 582
F GKRDL GQKK VVEYNVM+KAYGK+KLYDKAFSLFK M+N GTWP+E TYNSL+QMF+
Sbjct: 847 FIGKRDL-GQKKDVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNESTYNSLIQMFS 905
Query: 583 GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEV 642
GGDL+ +A D+LAEMQ GFKPQCLTFS+VIA YARLG+L +AV ++ EM R GV+PNEV
Sbjct: 906 GGDLVDEARDILAEMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEV 965
Query: 643 VYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKM 702
VYGSLINGF+ TG VEEAL YFR M E G+ ANQIVLTSLIKAYSK+GCLEGAK +YE M
Sbjct: 966 VYGSLINGFSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGM 1025
Query: 703 KEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD 762
K++EGGPD VASN+MI+LYA+LG+V+EA+ +F+D+R+KG D VSFA MMYLYK +GMLD
Sbjct: 1026 KDLEGGPDIVASNSMINLYADLGLVSEAKLIFDDLRQKGSADGVSFATMMYLYKNLGMLD 1085
Query: 763 EAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLF 822
EAID A+EMK SG LRD S+N+VMAC+ATNGQL CGELLHEM+++++LPD GTFKV+F
Sbjct: 1086 EAIDVADEMKQSGFLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMF 1145
Query: 823 TILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLD 882
T+LKKGG P EAV QL+SSYQE KPYA +A+ITSV+S VGL+A AL +CET + AE LD
Sbjct: 1146 TVLKKGGLPTEAVTQLESSYQEGKPYARQAVITSVFSTVGLHAFALESCETFLNAEVDLD 1205
Query: 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHS 942
S YNVAIYA+ +SG DKAL FMKM D+GLEPD+VT INL GCYGKAG++EG+KRI+S
Sbjct: 1206 SSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGLKRIYS 1265
Query: 943 QLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTAFES 985
QLKY ++EPNE+LFKA+IDAYR+A R DLA+L QEM+ AF++
Sbjct: 1266 QLKYREIEPNESLFKAIIDAYRSAKRHDLAELVSQEMKFAFDT 1308
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553861|ref|XP_002517971.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223542953|gb|EEF44489.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1386 bits (3588), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 670/995 (67%), Positives = 810/995 (81%), Gaps = 8/995 (0%)
Query: 6 SSRELGHESLQHHFFSPSKLHILHSPFKAGVFAGSINLHHKTCAKRQNVDPGLDIIVKNS 65
SSR+L HE+L HH SPSK L SP KA F G H+ K Q+ + +
Sbjct: 14 SSRKLKHETLHHHISSPSKHLSLKSPSKASTFTGFNQSHNHNFDKSQHFPCNPTVYRRVG 73
Query: 66 HTQKPNRRGP----RVSGGFKLQCNSKSTISPTKSSLVNSRRKKYGGILPSLLRSFESND 121
+ P +R P RVS GFKL C+SK+ PT++S N ++K+YGG+LPS+LRS S++
Sbjct: 74 CSLSPKQRTPQEKNRVSLGFKLHCHSKTLTLPTRNSSFNGKKKRYGGVLPSILRSLNSDN 133
Query: 122 DIDNTLNSFCENLSPKEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGR 181
DI+ TLNSF +NL+PKEQTV+LKEQ++WER++RVFEFFKS+KDYVPNVIHYNIVLRALGR
Sbjct: 134 DIEKTLNSFGDNLNPKEQTVILKEQRNWERMVRVFEFFKSRKDYVPNVIHYNIVLRALGR 193
Query: 182 AQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVT 241
AQKWD+LR WIEMAK+GVLPTNNTYGMLVDVYGKAGL+ EALLWIKHMKLRG+FPDEVT
Sbjct: 194 AQKWDDLRRCWIEMAKSGVLPTNNTYGMLVDVYGKAGLVTEALLWIKHMKLRGLFPDEVT 253
Query: 242 MNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDL----GSMPVSFKHFLSTE 297
MNTVV+VLK+ GEFD A FYKDWC+G++ELDDLEL+S D+ GS PVSFKHFLSTE
Sbjct: 254 MNTVVKVLKDAGEFDRAHSFYKDWCIGKIELDDLELNSMGDIEHGSGSGPVSFKHFLSTE 313
Query: 298 LFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGV 357
LF+ GGR + +G D VRKPRLTSTYNTLIDLYGKAGRL DAA++F++M+KSGV
Sbjct: 314 LFKIGGRIRTPKIVGSSDAEKIVRKPRLTSTYNTLIDLYGKAGRLGDAADIFSDMMKSGV 373
Query: 358 AVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALR 417
A+DTITFNTMIYTCGSHG+LSEAE L ME+ +SPDT+TYNI LSLYAD GNI+AA++
Sbjct: 374 AMDTITFNTMIYTCGSHGHLSEAETLLNKMEDRGVSPDTRTYNIFLSLYADEGNIDAAIK 433
Query: 418 YYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYI 477
Y KIREVGL PD+V+ RAILH LC+RNMV+EAEA+I E+EK +DEHS+PG++KMYI
Sbjct: 434 CYKKIREVGLLPDTVSHRAILHELCERNMVKEAEAIIEEIEKSSKQVDEHSLPGLVKMYI 493
Query: 478 NEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVV 537
N+GL +A + KCQ GGLS+KT AAIID YAE GLWAEAE VFY KRDLVGQK ++
Sbjct: 494 NKGLFDRANDLLNKCQFGGGLSAKTNAAIIDAYAENGLWAEAEAVFYRKRDLVGQKTDIL 553
Query: 538 EYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEM 597
EYNVMIKAYGK KLY+KAF+LF+ M++ GTWPDECTYNSL+QMF+G DLM QA DLL EM
Sbjct: 554 EYNVMIKAYGKGKLYEKAFTLFRSMRHHGTWPDECTYNSLIQMFSGADLMDQARDLLTEM 613
Query: 598 QGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKV 657
QG GFKPQC TFSS+IA YARLGQLS+A ++ EM + GV+PNEVVYG++ING+A G V
Sbjct: 614 QGVGFKPQCATFSSIIACYARLGQLSDAAGVYQEMVKVGVKPNEVVYGAIINGYAEEGNV 673
Query: 658 EEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTM 717
+EAL+YF MM E G+ ANQIVLTSLIK YSK+GC + AKQ+Y+KM +EGGPD +ASN+M
Sbjct: 674 KEALKYFHMMEEYGISANQIVLTSLIKVYSKLGCFDSAKQLYQKMMCLEGGPDIIASNSM 733
Query: 718 ISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL 777
ISLYA+LGM++EAE +FN++REKG D VS+A MMYLYK MGMLDEAID AEEMKLSGLL
Sbjct: 734 ISLYADLGMISEAELVFNNLREKGSADGVSYATMMYLYKGMGMLDEAIDVAEEMKLSGLL 793
Query: 778 RDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQ 837
RD +SYN+VM C+ATNGQL +CGELLHEM+ +KL PD GTFK+LFT+LKKGG P EAV Q
Sbjct: 794 RDSVSYNKVMTCYATNGQLLECGELLHEMIKKKLFPDGGTFKILFTVLKKGGLPTEAVMQ 853
Query: 838 LQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSG 897
L+SSY E KPYA +A+ITSV+S+VGL+ALA+ +C+ KA+ LD F YNVAI+A+ SSG
Sbjct: 854 LESSYHEGKPYARQAVITSVFSLVGLHALAMESCKIFTKADIALDLFAYNVAIFAYGSSG 913
Query: 898 KNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFK 957
+ DKALNTFMKM D+GLEPD+VT I LV CYGKAG+VEGVKRI+SQLKY ++P+++ FK
Sbjct: 914 EIDKALNTFMKMQDEGLEPDLVTSICLVYCYGKAGMVEGVKRIYSQLKYRDIKPSDSAFK 973
Query: 958 AVIDAYRNANREDLADLACQEMRTAFESPEHDDSE 992
AV+DAY +ANR DLA+L QE+R F+SP DS+
Sbjct: 974 AVVDAYEDANRHDLAELVNQELRLGFDSPRFSDSD 1008
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447783|ref|XP_004141647.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1278 bits (3307), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/1004 (62%), Positives = 782/1004 (77%), Gaps = 16/1004 (1%)
Query: 1 MLHCYSSRELGHESLQHHFFSPSKLHILHSPFKAGVFAGSINLHHKTCAKRQNVDPGLDI 60
MLH + RELG +S F + SP F +N + C ++
Sbjct: 2 MLHVGNCRELGQDSFTARLFQTN-----FSP----SFMDCVNAKGQRCLFLYTSLTSREL 52
Query: 61 IVKNSHTQKPNRRGPRVSGGFKLQCNSKSTISPTKSSLVNSRRKKYGGILPSLLRSFESN 120
N ++QK R +VS GFKLQC+S++ ++ N ++K YGGILPS+LRS +S
Sbjct: 53 NFVNLNSQKHVNRDLKVSLGFKLQCHSRTLSMASQRLSTNGKKKSYGGILPSILRSLKSA 112
Query: 121 DDIDNTLNSFCENLSPKEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALG 180
DI N L+S C+NLSPKEQTV+LKEQ WERVI+VF++FKSQKDYVPNVIHYNIVLR LG
Sbjct: 113 SDIGNILSSSCQNLSPKEQTVILKEQSRWERVIQVFQWFKSQKDYVPNVIHYNIVLRTLG 172
Query: 181 RAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEV 240
+AQKWDELRL W EMA+NGV+PTNNTYGML+DVYGK GL+KEALLWIKHM +RGIFPDEV
Sbjct: 173 QAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVYGKVGLVKEALLWIKHMTVRGIFPDEV 232
Query: 241 TMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDS-TDDLGS----MPVSFKHFLS 295
TMNTVVRVLK+ GEFDSAD+FYKDWC G +EL+D +L+S +D G P++ KHFL
Sbjct: 233 TMNTVVRVLKDAGEFDSADKFYKDWCRGLVELNDFDLNSRVEDFGVNSAVEPITPKHFLL 292
Query: 296 TELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKS 355
TELFR G R P + +D N VRKPRLTSTYNTLIDLYGKAGRL+DAANVF EML +
Sbjct: 293 TELFRIGTRIPNRKVSPEVD--NCVRKPRLTSTYNTLIDLYGKAGRLKDAANVFGEMLTT 350
Query: 356 GVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAA 415
G+++DTITFNTMIYTCGSHG+L+EAE L MEE +SPDTKTYNI LSLYA+ GNI+ A
Sbjct: 351 GISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFLSLYANNGNIDGA 410
Query: 416 LRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKM 475
L+ Y +IREVGLFPD VT RA+LH+L +RNMV++ E VI EMEK + +DEHS+P V+KM
Sbjct: 411 LKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKM 470
Query: 476 YINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKS 535
YINEGLL +AKI+ +K +LD LS + AAIID YAEKGLW EAE++F KRDL G+K
Sbjct: 471 YINEGLLDRAKILLEKYRLDTELSPRISAAIIDAYAEKGLWFEAESIFLWKRDLSGKKMD 530
Query: 536 VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLA 595
V+EYNVMIKAYGK++LY+KAF LFK MKN GTWPDECTYNSL+QMF+GGDL+ +A LL
Sbjct: 531 VMEYNVMIKAYGKAELYEKAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLT 590
Query: 596 EMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG 655
EMQ GFKP C TFS+VIA+YARLG +S+AV+++ M A VEPNE++YG L+NGFA G
Sbjct: 591 EMQRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIG 650
Query: 656 KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASN 715
+ EEAL+YFR+M + G+ NQIVLTSLIKA+SK+G LE A+++Y +MK ME G DT+ASN
Sbjct: 651 QAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASN 710
Query: 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775
+MI+LYA+LGMV+EA+ +F D+RE+G D VSFA M+YLYK +GMLDEAI+ AEEMK SG
Sbjct: 711 SMINLYADLGMVSEAKQVFEDLRERGYADGVSFATMIYLYKNIGMLDEAIEVAEEMKESG 770
Query: 776 LLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAV 835
LLRD S+ +V+ C+A NGQ+R+CGELLHEM+T+KLLPDN TF VLFTILKKG P+EAV
Sbjct: 771 LLRDATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKGVIPLEAV 830
Query: 836 KQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKS 895
QL+S++ E K YA +AII +V+S +GL+A AL +C+T +KAE LDSF YNVAIYA+ +
Sbjct: 831 SQLESAFHEEKTYARQAIIAAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIYAYGA 890
Query: 896 SGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENL 955
+ K DKALN FMKM DQ L+PD+VT INLVGCYGKAG++EGVK+I+SQLKYG++E N++L
Sbjct: 891 AEKIDKALNIFMKMKDQNLKPDLVTYINLVGCYGKAGMIEGVKQIYSQLKYGEIELNKSL 950
Query: 956 FKAVIDAYRNANREDLADLACQEMRTAFESPEHDDSEFEENSEE 999
F A+I+ +R+A+R DL + QEM+ + +S H +SE + S+E
Sbjct: 951 FFAIINTFRSAHRYDLVQMVKQEMKFSLDSEVHSESELDNLSDE 994
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449525162|ref|XP_004169587.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g73710-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1275 bits (3298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/1004 (62%), Positives = 781/1004 (77%), Gaps = 16/1004 (1%)
Query: 1 MLHCYSSRELGHESLQHHFFSPSKLHILHSPFKAGVFAGSINLHHKTCAKRQNVDPGLDI 60
MLH + RELG +S F + SP F +N + C ++
Sbjct: 2 MLHVGNCRELGQDSFTARLFQTN-----FSP----SFMDCVNAKGQRCLFLYTSLTSREL 52
Query: 61 IVKNSHTQKPNRRGPRVSGGFKLQCNSKSTISPTKSSLVNSRRKKYGGILPSLLRSFESN 120
N ++QK R +VS GFKLQC+S++ ++ N ++K YGGILPS+LRS +S
Sbjct: 53 NFVNLNSQKHVNRDLKVSLGFKLQCHSRTLSMASQRLSTNGKKKSYGGILPSILRSLKSA 112
Query: 121 DDIDNTLNSFCENLSPKEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALG 180
DI + L+S C+NLSPKEQTV+LKEQ WERVI+VF++FKSQKDYVPNVIHYNIVLR LG
Sbjct: 113 SDIGSILSSSCQNLSPKEQTVILKEQSRWERVIQVFQWFKSQKDYVPNVIHYNIVLRTLG 172
Query: 181 RAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEV 240
+AQKWDELRL W EMA+NGV+PTNNTYGML+DVYGK GL+KEALLWIKHM +RGIFPDEV
Sbjct: 173 QAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVYGKVGLVKEALLWIKHMTVRGIFPDEV 232
Query: 241 TMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDS-TDDLGS----MPVSFKHFLS 295
TMNTVVRVLK+ GEFDSAD+FYKDWC G +EL+D +L+S +D G P++ KHF
Sbjct: 233 TMNTVVRVLKDAGEFDSADKFYKDWCRGLVELNDFDLNSRVEDFGVNSAVEPITPKHFCX 292
Query: 296 TELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKS 355
TELFR G R P + +D N VRKPRLTSTYNTLIDLYGKAGRL+DAANVF EML +
Sbjct: 293 TELFRIGTRIPNRKVSPEVD--NCVRKPRLTSTYNTLIDLYGKAGRLKDAANVFGEMLTT 350
Query: 356 GVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAA 415
G+++DTITFNTMIYTCGSHG+L+EAE L MEE +SPDTKTYNI LSLYA+ GNI+ A
Sbjct: 351 GISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFLSLYANDGNIDGA 410
Query: 416 LRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKM 475
L+ Y +IREVGLFPD VT RA+LH+L +RNMV++ E VI EMEK + +DEHS+P V+KM
Sbjct: 411 LKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKM 470
Query: 476 YINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKS 535
YINEGLL +AKI+ +K +LD LS + AAIID YAEKGLW EAE++F KRDL G+K
Sbjct: 471 YINEGLLDRAKILLEKYRLDTELSPRISAAIIDAYAEKGLWFEAESIFLWKRDLAGKKXD 530
Query: 536 VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLA 595
V+EYNVMIKAYGK++LY+KAF LFK MKN GTWPDECTYNSL+QMF+GGDL+ +A LL
Sbjct: 531 VMEYNVMIKAYGKAELYEKAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLT 590
Query: 596 EMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG 655
EMQ GFKP C TFS+VIA+YARLG +S+AV+++ M A VEPNE++YG L+NGFA G
Sbjct: 591 EMQRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIG 650
Query: 656 KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASN 715
+ EEAL+YFR+M + G+ NQIVLTSLIKA+SK+G LE A+++Y +MK ME G DT+ASN
Sbjct: 651 QAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASN 710
Query: 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775
+MI+LYA+LGMV+EA+ +F D+RE+G D VSFA M+YLYK +GMLDEAI+ AEEMK SG
Sbjct: 711 SMINLYADLGMVSEAKQVFEDLRERGYADGVSFATMIYLYKNIGMLDEAIEVAEEMKESG 770
Query: 776 LLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAV 835
LLRD S+ +V+ C+A NGQ+R+CGELLHEM+T+KLLPDN TF VLFTILKKG P+EAV
Sbjct: 771 LLRDATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKGVIPLEAV 830
Query: 836 KQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKS 895
QL+S++ E K YA +AII +V+S +GL+A AL +C+T +KAE LDSF YNVAIYA+ +
Sbjct: 831 SQLESAFHEEKTYARQAIIAAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIYAYGA 890
Query: 896 SGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENL 955
+ K DKALN FMKM DQ L+PD+VT INLVGCYGKAG++EGVK+I+SQLKYG++E N++L
Sbjct: 891 AEKIDKALNIFMKMKDQNLKPDLVTYINLVGCYGKAGMIEGVKQIYSQLKYGEIELNKSL 950
Query: 956 FKAVIDAYRNANREDLADLACQEMRTAFESPEHDDSEFEENSEE 999
F A+I+ +R+A+R DL + QEM+ + +S H +SE + S+E
Sbjct: 951 FFAIINTFRSADRYDLVQMVKQEMKFSLDSEVHSESELDNLSDE 994
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15219527|ref|NP_177512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75169780|sp|Q9C9U0.1|PP118_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g73710 gi|12324197|gb|AAG52063.1|AC012679_1 hypothetical protein; 49134-52109 [Arabidopsis thaliana] gi|332197379|gb|AEE35500.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1233 bits (3190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/927 (65%), Positives = 731/927 (78%), Gaps = 14/927 (1%)
Query: 70 PNRRGPRVSGGFKLQCNSKSTIS--PTKSSLVN--SRRKKYGGILPSLLRSFESNDDIDN 125
P RVS +L C + S+ S P + S N SR++KYGG++PS+LRS +S+ DI+
Sbjct: 42 PCNFSSRVSFKLQLHCAASSSSSVSPPRCSKPNPSSRKRKYGGVIPSILRSLDSSTDIET 101
Query: 126 TLNSFCENLSPKEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKW 185
TL S C NLSPKEQTV+LKEQ WERV+RVF FF+S + YVPNVIHYNIVLRALGRA KW
Sbjct: 102 TLASLCLNLSPKEQTVLLKEQTRWERVLRVFRFFQSHQSYVPNVIHYNIVLRALGRAGKW 161
Query: 186 DELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTV 245
DELRL WIEMA NGVLPTNNTYGMLVDVYGKAGL+KEALLWIKHM R FPDEVTM TV
Sbjct: 162 DELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLVKEALLWIKHMGQRMHFPDEVTMATV 221
Query: 246 VRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDL-----GSMPVSFKHFLSTELFR 300
VRV K GEFD ADRF+K WC G+++LD LDS DD PV+ K FLS ELF+
Sbjct: 222 VRVFKNSGEFDRADRFFKGWCAGKVDLD---LDSIDDFPKNGSAQSPVNLKQFLSMELFK 278
Query: 301 TGGRNPISRNMGLLDMGNSV-RKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAV 359
G RNPI +++ +S RKPRLTST+NTLIDLYGKAGRL DAAN+F+EMLKSGV +
Sbjct: 279 VGARNPIEKSLHFASGSDSSPRKPRLTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPI 338
Query: 360 DTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYY 419
DT+TFNTMI+TCG+HG+LSEAE+L MEE ISPDTKTYNILLSL+AD G+I AAL YY
Sbjct: 339 DTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYY 398
Query: 420 WKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINE 479
KIR+VGLFPD+VT RA+LHILCQR MV E EAVI EM++ + IDEHSVP +M+MY+NE
Sbjct: 399 RKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNE 458
Query: 480 GLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEY 539
GL+ QAK +F++ QLD LSS TLAA+IDVYAEKGLW EAETVFYGKR++ GQ+ V+EY
Sbjct: 459 GLVVQAKALFERFQLDCVLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEY 518
Query: 540 NVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQG 599
NVMIKAYGK+KL++KA SLFK MKN GTWPDECTYNSL QM AG DL+ +A +LAEM
Sbjct: 519 NVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLD 578
Query: 600 AGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEE 659
+G KP C T++++IA+Y RLG LS+AVDL+ M + GV+PNEVVYGSLINGFA +G VEE
Sbjct: 579 SGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEE 638
Query: 660 ALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719
A+QYFRMM E G+ +N IVLTSLIKAYSK+GCLE A++VY+KMK+ EGGPD ASN+M+S
Sbjct: 639 AIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAASNSMLS 698
Query: 720 LYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD 779
L A+LG+V+EAES+FN +REKG D +SFA MMYLYK MGMLDEAI+ AEEM+ SGLL D
Sbjct: 699 LCADLGIVSEAESIFNALREKGTCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLSD 758
Query: 780 VISYNQVMACFATNGQLRQCGELLHEMLTQ-KLLPDNGTFKVLFTILKKGGFPIEAVKQL 838
S+NQVMAC+A +GQL +C EL HEML + KLL D GTFK LFT+LKKGG P EAV QL
Sbjct: 759 CTSFNQVMACYAADGQLSECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAVSQL 818
Query: 839 QSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGK 898
Q++Y E KP A+ AI +++S +GL A AL +C+ L E + F YN IY + +SG
Sbjct: 819 QTAYNEAKPLATPAITATLFSAMGLYAYALESCQELTSGEIPREHFAYNAVIYTYSASGD 878
Query: 899 NDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKA 958
D AL +M+M ++GLEPDIVT LVG YGKAG+VEGVKR+HS+L +G++EP+++LFKA
Sbjct: 879 IDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRLTFGELEPSQSLFKA 938
Query: 959 VIDAYRNANREDLADLACQEMRTAFES 985
V DAY +ANR+DLAD+ +EM AFE+
Sbjct: 939 VRDAYVSANRQDLADVVKKEMSIAFEA 965
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124604|ref|XP_002319373.1| predicted protein [Populus trichocarpa] gi|222857749|gb|EEE95296.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1217 bits (3150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/812 (72%), Positives = 683/812 (84%), Gaps = 8/812 (0%)
Query: 195 MAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGE 254
MAKNGVLPTNNTYGMLVDVY KAGL+ EALLWIKHM+LRG+FPDEVTMNTVV+VLK+VGE
Sbjct: 1 MAKNGVLPTNNTYGMLVDVYAKAGLV-EALLWIKHMRLRGLFPDEVTMNTVVKVLKDVGE 59
Query: 255 FDSADRFYKDWCLGRLELDDLELDSTDDLG----SMPVSFKHFLSTELFRTGGRNPISRN 310
FD A+RFYKDWC GR+ELD LELDS D S PVSFKHFL TELF+TGGR I
Sbjct: 60 FDKAERFYKDWCAGRVELDGLELDSMLDSENGSRSEPVSFKHFLLTELFKTGGRVKIG-- 117
Query: 311 MGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYT 370
G D VRKP LTSTYNTLIDLYGKAGRL+DAA VF+EMLKSGVA+DTITFNTMI+T
Sbjct: 118 -GSSDEETLVRKPCLTSTYNTLIDLYGKAGRLKDAAEVFSEMLKSGVAMDTITFNTMIFT 176
Query: 371 CGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPD 430
CGSHG LSEAE+L MEE RISPDT+TYNI LSLYAD GNINAAL YWKIR VGL PD
Sbjct: 177 CGSHGLLSEAESLLDKMEERRISPDTRTYNIFLSLYADAGNINAALECYWKIRNVGLVPD 236
Query: 431 SVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFK 490
V+ R ILHILC RNMV+E EAVI EM+K ID HSVPG++KMYINEGL +A +
Sbjct: 237 IVSHRTILHILCGRNMVREVEAVIEEMKKSSQKIDVHSVPGIIKMYINEGLHDRANNLLD 296
Query: 491 KCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSK 550
KCQ D G SSK AAIID YAE+GLWAEAE VFYGKRDL+G +K V+EYNVM+KAYGK+K
Sbjct: 297 KCQFDVGFSSKVRAAIIDAYAERGLWAEAEAVFYGKRDLLGPEKGVLEYNVMVKAYGKAK 356
Query: 551 LYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFS 610
LYDKAFSLFK M+N GTWPDE TYNSL+QMF+GGDLM QA DLL EMQ AGFKPQCLTFS
Sbjct: 357 LYDKAFSLFKGMRNHGTWPDEVTYNSLIQMFSGGDLMDQARDLLDEMQEAGFKPQCLTFS 416
Query: 611 SVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMREC 670
+V+A YARLGQLS+AVD++ EM +AGV+PNEVVYGSLINGFA G VEEAL+YFRMM E
Sbjct: 417 AVMACYARLGQLSDAVDVYQEMVKAGVKPNEVVYGSLINGFAEVGNVEEALKYFRMMEES 476
Query: 671 GLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEA 730
G+ ANQIVLTSLIK YSK+GC +GAK +Y+KMK++EGGPD +ASN+MISLYA+LGM++EA
Sbjct: 477 GIPANQIVLTSLIKVYSKLGCFDGAKHLYKKMKDLEGGPDIIASNSMISLYADLGMISEA 536
Query: 731 ESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACF 790
E +F ++RE GQ D VSFA MMYLYK+MGMLDEAID AEEMK SGLLRD +SYN+VMAC+
Sbjct: 537 ELVFKNLRENGQADGVSFATMMYLYKSMGMLDEAIDIAEEMKQSGLLRDCVSYNKVMACY 596
Query: 791 ATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS 850
ATNGQLR+C ELLHEM+ QKLLPD GTFK+LFT+LKKGGFP E + QL+S+Y E KPYA
Sbjct: 597 ATNGQLRECAELLHEMIGQKLLPDGGTFKILFTVLKKGGFPSEGIAQLESAYLEGKPYAR 656
Query: 851 EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKML 910
+A+ITS++SVVGL+ALAL +CE+ KAE LDSF YNVAIYA+ SSG+ DKAL TFMK
Sbjct: 657 QAVITSIFSVVGLHALALESCESFTKAEVALDSFAYNVAIYAYGSSGEIDKALKTFMKRQ 716
Query: 911 DQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANRED 970
D+GLEPD+VT INLV CYGKAG+VEGVKRI+SQLKYG+++PN++L KAV+DAY+NANR D
Sbjct: 717 DEGLEPDLVTSINLVHCYGKAGMVEGVKRIYSQLKYGEIKPNDSLVKAVVDAYKNANRHD 776
Query: 971 LADLACQEMRTAFESPEHDDSEFEENSEESYL 1002
LA+L Q++R F+S ++ DSE E S+ES L
Sbjct: 777 LAELVNQDIRFGFDSQQYSDSEIEAGSDESSL 808
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839237|ref|XP_002887500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333341|gb|EFH63759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1215 bits (3144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 590/893 (66%), Positives = 725/893 (81%), Gaps = 7/893 (0%)
Query: 100 NSRRKKYGGILPSLLRSFESNDDIDNTLNSFCENLSPKEQTVVLKEQKSWERVIRVFEFF 159
+SR++KYGG++PS+LRS +S+ DI+ TL S C NLSPKEQTV+LKEQ W+RV+RVF FF
Sbjct: 70 SSRKRKYGGVIPSILRSLDSSTDIETTLASLCLNLSPKEQTVLLKEQTRWDRVLRVFRFF 129
Query: 160 KSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGL 219
+S + YVPNVIHYNIVLRALGRA KWDELRL WIEMA NGVLPTNNTYGMLVDVYGKAGL
Sbjct: 130 QSHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGL 189
Query: 220 IKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDS 279
+KEALLWIKHM R FPDEVTM TVVRV K GEFD ADRF+K WC G++ LDDL+LDS
Sbjct: 190 VKEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGWCAGKVNLDDLDLDS 249
Query: 280 TDDL-----GSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSV-RKPRLTSTYNTLI 333
DD PV+ K FLS ELF+ G RNPI +++ +S RKPRLTST+NTLI
Sbjct: 250 IDDFPKNGSAQSPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPRLTSTFNTLI 309
Query: 334 DLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRIS 393
DLYGKAGRL DAAN+F+EMLKSGV +DT+TFNTMI+TCG+HG+LSEAE+L MEE IS
Sbjct: 310 DLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGIS 369
Query: 394 PDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAV 453
PDTKTYNILLSL+AD G+I AAL+YY IR+VGLFPD+VT RA+LHILCQR MV EAEAV
Sbjct: 370 PDTKTYNILLSLHADAGDIEAALKYYRNIRKVGLFPDTVTHRAVLHILCQRKMVAEAEAV 429
Query: 454 IIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEK 513
+ EM++ + IDEHSVP +M+MY+NEGL+ QAK +F++ QLD LSS TLAA++DVYAEK
Sbjct: 430 MAEMDRNSIRIDEHSVPVIMQMYVNEGLVGQAKALFERFQLDCVLSSTTLAAVMDVYAEK 489
Query: 514 GLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECT 573
GLW EAETVFYGKR++ GQ+ V+EYNVMIKAYGK+KL++KA S+FK MKN GTWPDECT
Sbjct: 490 GLWVEAETVFYGKRNMTGQRNDVLEYNVMIKAYGKAKLHEKALSIFKGMKNQGTWPDECT 549
Query: 574 YNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMR 633
YNSL+QM AG DL+ A +LAEM +G KP C T++++IA+Y RLG LS+AVDL+ M+
Sbjct: 550 YNSLIQMLAGVDLVDDAQRILAEMLDSGCKPGCKTYAALIASYVRLGLLSDAVDLYEAMK 609
Query: 634 RAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLE 693
+ GV+PNEVVYGSLINGFA +G VEEA+QYF++M E G+ +N IVLTSLIKAYSK+GCLE
Sbjct: 610 KTGVKPNEVVYGSLINGFAESGMVEEAIQYFKLMEEHGVQSNHIVLTSLIKAYSKVGCLE 669
Query: 694 GAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMY 753
A++VY+KMK+ GGPD ASN+M+SL A+LG+V+EAES+FND+REKG D +SFA MMY
Sbjct: 670 EARRVYDKMKDSGGGPDVAASNSMLSLCADLGIVSEAESIFNDLREKGTCDVISFATMMY 729
Query: 754 LYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ-KLL 812
LYK MGMLDEAI+ AEEM+ SGLLRD S+NQV+AC+A +GQLR+C EL HEML + KLL
Sbjct: 730 LYKGMGMLDEAIEVAEEMRESGLLRDCTSFNQVLACYAADGQLRECCELFHEMLVERKLL 789
Query: 813 PDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCE 872
D GTFK LFT+LKKGG P EAV QLQ++Y E KP A+ AI +++S +GL A AL +C+
Sbjct: 790 LDWGTFKTLFTLLKKGGVPSEAVAQLQTAYNEAKPLATPAITATLFSAMGLYAYALESCQ 849
Query: 873 TLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAG 932
L + E + + YN IY + +SG D AL T+M+M ++GLEPD+VT LVG YGKAG
Sbjct: 850 ELTRDEIPREHYAYNAVIYTYSASGDIDMALKTYMRMQEKGLEPDVVTQAYLVGIYGKAG 909
Query: 933 LVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTAFES 985
+VEGVKR+HS+L +G++EPN++LFKAV DAY +ANR+DLAD+ +EM AFE+
Sbjct: 910 MVEGVKRVHSRLTFGELEPNQSLFKAVRDAYVSANRQDLADVVKKEMSIAFEA 962
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528730|ref|XP_003532952.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1169 bits (3024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/931 (60%), Positives = 729/931 (78%), Gaps = 16/931 (1%)
Query: 87 SKSTISPTKSSLVN---SRRKKYGGILPSLLRSFESNDDIDNTLNSFCENLSPKEQTVVL 143
+ S+++P + + N ++K YGG LPSLLR+ + D++ L++ LSPKE TV+L
Sbjct: 20 TSSSLNPYRCTRPNPKKKKKKPYGGALPSLLRTLSTAADLETALSTLPSPLSPKEITVLL 79
Query: 144 KEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPT 203
KEQ +W+R R+FE+FKSQ Y PN IHYN+VLRALG+AQ+WD+LRL W++MAKNGVLPT
Sbjct: 80 KEQSTWQRAARIFEWFKSQTWYTPNAIHYNVVLRALGKAQQWDQLRLCWLDMAKNGVLPT 139
Query: 204 NNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYK 263
NNTY MLVDVYGKAGL++EALLWI+HM++RG FPDEVTM TVV+VLK+VG+FD A RFYK
Sbjct: 140 NNTYSMLVDVYGKAGLVQEALLWIRHMRVRGFFPDEVTMCTVVKVLKDVGDFDRAHRFYK 199
Query: 264 DWCLGRLELDDLELD-------STDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDM 316
WC G++EL+DLEL+ S++ SM +SFK FLSTELF+ GGR P+S +
Sbjct: 200 GWCEGKVELNDLELEDSLGINNSSNGSASMGISFKQFLSTELFKIGGRAPVSGEARSTNS 259
Query: 317 G--NSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSH 374
N +KPRL++TYN LIDLYGKAGRL +AA VFAEMLK+GVAVD TFNTMI+ CGS
Sbjct: 260 SSLNGPQKPRLSNTYNVLIDLYGKAGRLSEAAEVFAEMLKAGVAVDVWTFNTMIFVCGSQ 319
Query: 375 GNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQ 434
G+L+EAEAL MMEE ++PDTKT+NI LSLYA+ +I AA+ Y +IRE GL PD VT
Sbjct: 320 GDLAEAEALLGMMEEKGVAPDTKTFNIFLSLYAEARDIGAAVLCYKRIREAGLCPDEVTY 379
Query: 435 RAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQL 494
RA+L +LC++NMV+E E +I EME+ + +DEH VPG+++MY+ EG + +A + KK Q+
Sbjct: 380 RALLGVLCRKNMVREVEDLIDEMERAFVSVDEHCVPGIVEMYVGEGDVDKAFDLLKKFQV 439
Query: 495 DGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDK 554
+G +SS +AI+DV+AEKGLW EAE VFY R+L G+K+ V+E NVMIKAYGK+KLYDK
Sbjct: 440 NGEMSSNIRSAIMDVFAEKGLWEEAEDVFYRGRNLAGRKRDVLECNVMIKAYGKAKLYDK 499
Query: 555 AFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIA 614
A SLFK MKN GTWP+E TYNSLVQM +G DL+ QA+DL+ EMQ GFKP C TFS+VI
Sbjct: 500 AISLFKGMKNHGTWPNESTYNSLVQMLSGADLVDQAMDLVDEMQEVGFKPPCQTFSAVIG 559
Query: 615 AYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWA 674
YARLGQLS+AV +F EM R GV+PNEVVYGSLINGFA G +EEAL+YF MM E GL +
Sbjct: 560 CYARLGQLSDAVSVFKEMVRTGVKPNEVVYGSLINGFAEHGSLEEALKYFHMMEESGLSS 619
Query: 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMF 734
N +VLTSL+K+Y K+G LEGAK +YE+MK MEGG D VA N+MI L+A+LG+V+EA+ F
Sbjct: 620 NLVVLTSLLKSYCKVGNLEGAKAIYERMKNMEGGLDLVACNSMIGLFADLGLVSEAKLAF 679
Query: 735 NDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNG 794
++RE G+ DA+S+A +MYLYK +G++DEAI+ AEEMKLSGLLRD +SYN+V+ C+A NG
Sbjct: 680 ENLREMGRADAISYATIMYLYKGVGLIDEAIEIAEEMKLSGLLRDCVSYNKVLVCYAANG 739
Query: 795 QLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAII 854
Q +CGEL+HEM++QKLLP++GTFKVLFTILKKGG P EAV QL+SSYQE KPYA +
Sbjct: 740 QFYECGELIHEMISQKLLPNDGTFKVLFTILKKGGIPTEAVAQLESSYQEGKPYARQTTF 799
Query: 855 TSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGL 914
T++YS+VG++ LAL + +T I++E LDS +NVAIYA+ S+G +KALN +MKM D+ L
Sbjct: 800 TALYSLVGMHNLALESAQTFIESEVDLDSSAFNVAIYAYGSAGDINKALNIYMKMRDEHL 859
Query: 915 EPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADL 974
PD+VT I LVGCYGKAG+VEGVK+I+SQL+YG++E NE+LFKA+IDAY+ NR+DLA+L
Sbjct: 860 GPDLVTYIYLVGCYGKAGMVEGVKQIYSQLEYGEIESNESLFKAIIDAYKICNRKDLAEL 919
Query: 975 ACQEMRTAFESPEH----DDSEFEENSEESY 1001
QEM+ F S EH ++E+ SE Y
Sbjct: 920 VSQEMKFTFNSKEHSEIESETEYATGSEAEY 950
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357491817|ref|XP_003616196.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355517531|gb|AES99154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1023 bits (2644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/910 (57%), Positives = 680/910 (74%), Gaps = 23/910 (2%)
Query: 83 LQC-NSKSTISPTKSSLVNSRRKKYGGILPSLLRSFESNDDIDNTLNSFCENLSPKEQTV 141
L C SK+ PT V+S +L S+L+ E+++D+++TL+SF E +SPKE T+
Sbjct: 46 LTCFRSKTLPLPTN---VSSTENDSDNVLDSVLKLLETSNDVEDTLDSFGEIISPKEITM 102
Query: 142 VLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVL 201
+LK+ ++WE V+RVF++F+SQ +YV NVIHYN+VLR LGRA++WD+LRL WIEMAKN VL
Sbjct: 103 ILKKLRNWEIVVRVFKWFRSQNNYVHNVIHYNVVLRTLGRAKQWDQLRLCWIEMAKNNVL 162
Query: 202 PTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRF 261
PTNNTY MLV YGK GL KEALLW+KHM +RG FPDEVTM+TVV+VLK+VGEFD ADRF
Sbjct: 163 PTNNTYSMLVHCYGKGGLGKEALLWVKHMMVRGFFPDEVTMSTVVKVLKDVGEFDRADRF 222
Query: 262 YKDWCLGRLELDDLELD------STDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLD 315
YK+WC G+++LDDL+ D + S+P+SFK FLSTELF+TGG S NM +D
Sbjct: 223 YKNWCGGKVDLDDLDFDSSDCAIADGSRSSVPISFKQFLSTELFKTGGGIRDS-NMLSMD 281
Query: 316 MGN-SVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSH 374
M + KPRL++TYNTLIDLYGKAGRL+DAA+VFA+M+KSGVA+DT TFNT+I+ GSH
Sbjct: 282 MEEIAPLKPRLSTTYNTLIDLYGKAGRLKDAADVFADMMKSGVAMDTCTFNTLIFISGSH 341
Query: 375 GNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQ 434
GNL EAE+L MEE IS +T+TYNI LSLYA G+I+AAL YY +IREVGLFPD+VT
Sbjct: 342 GNLLEAESLLDKMEERGISSNTRTYNIFLSLYATAGSIDAALSYYRRIREVGLFPDTVTY 401
Query: 435 RAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQL 494
RA+L LC NMVQ E VI EMEK + +D S+ G++KMYINEG + +A + +K
Sbjct: 402 RALLGALCTENMVQAVEGVIDEMEKNSVSLDALSLSGIVKMYINEGDVDKANDLLQKY-- 459
Query: 495 DGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDK 554
G S AAIID +AEKG WAEAE +FY KRD Q + ++E+NVMIKAYGK+ YDK
Sbjct: 460 -GEPPSFICAAIIDAFAEKGFWAEAENIFYRKRDKARQARDILEFNVMIKAYGKANHYDK 518
Query: 555 AFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIA 614
A LF+ MK G P + TYNS++QM +G DL+ QA DL EMQ GFKP C TFS+VI
Sbjct: 519 AVLLFEEMKYQGISPADSTYNSIIQMLSGADLVDQARDLTVEMQEMGFKPHCQTFSAVIG 578
Query: 615 AYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWA 674
YARLGQLS+AV ++ EM AGV+PNE VYG+LINGFA G+++EALQYF +M+E GL A
Sbjct: 579 CYARLGQLSDAVIVYQEMISAGVKPNETVYGALINGFAEHGRLDEALQYFHLMQESGLSA 638
Query: 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMF 734
N +VLT+L+K+YSK G L+G K +Y++M+ MEG D A ++MI+ +AELG+V+EA+ F
Sbjct: 639 NLVVLTTLMKSYSKAGDLKGVKSIYKQMQNMEGVLDLAARSSMITAFAELGLVSEAKLTF 698
Query: 735 NDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNG 794
+E GQ D+ S+ MMY+YK +GM+DEAI AEEMK+SGLLRD +SYN+V+ C+A N
Sbjct: 699 EKFKETGQADSTSYGIMMYVYKDIGMIDEAIKIAEEMKISGLLRDCVSYNRVLTCYAINR 758
Query: 795 QLRQCGELLHEML-TQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAI 853
Q +CGELL+EM+ ++KLLPD+GT VLFTILKK FP+EA +QL+ YQE KPYAS+A
Sbjct: 759 QFHKCGELLYEMIVSKKLLPDDGTLIVLFTILKKAEFPVEAAEQLELCYQEGKPYASQAT 818
Query: 854 ITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQG 913
T++YS++G++ LAL +T++ E S YNVAIYA+ S+G +KALN MKM D+
Sbjct: 819 YTALYSLLGMHTLALKFAQTVL--ENLDSSAAYNVAIYAYASAGDVEKALNIHMKMRDKH 876
Query: 914 LEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLAD 973
+EPDIVT INLVGCYGKAG+VEGVK+IHS +YG++E +E+LFKA+ DAY+ N +
Sbjct: 877 VEPDIVTYINLVGCYGKAGMVEGVKKIHSLFEYGEIERSESLFKAIKDAYKICNID---- 932
Query: 974 LACQEMRTAF 983
Q MR F
Sbjct: 933 -PSQHMRFKF 941
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1004 | ||||||
| TAIR|locus:2027744 | 991 | AT1G73710 "AT1G73710" [Arabido | 0.906 | 0.918 | 0.652 | 0.0 | |
| TAIR|locus:2094573 | 842 | AT3G23020 [Arabidopsis thalian | 0.529 | 0.631 | 0.390 | 4.1e-104 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.618 | 0.758 | 0.256 | 6.3e-49 | |
| TAIR|locus:2177028 | 816 | AT5G12100 [Arabidopsis thalian | 0.486 | 0.598 | 0.269 | 7.6e-48 | |
| TAIR|locus:2054331 | 822 | EMB2654 "EMBRYO DEFECTIVE 2654 | 0.561 | 0.686 | 0.249 | 1.7e-44 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.787 | 0.711 | 0.228 | 9.4e-44 | |
| TAIR|locus:2178037 | 678 | AT5G39980 [Arabidopsis thalian | 0.506 | 0.750 | 0.248 | 1.3e-38 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.525 | 0.723 | 0.247 | 1.4e-41 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.635 | 0.732 | 0.222 | 3.1e-40 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.498 | 0.669 | 0.262 | 1.4e-39 |
| TAIR|locus:2027744 AT1G73710 "AT1G73710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3057 (1081.2 bits), Expect = 0., P = 0.
Identities = 599/918 (65%), Positives = 725/918 (78%)
Query: 76 RVSGGFKLQC--NSKSTISPTKSSLVN--SRRKKYGGILPSLLRSFESNDDIDNTLNSFC 131
RVS +L C +S S++SP + S N SR++KYGG++PS+LRS +S+ DI+ TL S C
Sbjct: 48 RVSFKLQLHCAASSSSSVSPPRCSKPNPSSRKRKYGGVIPSILRSLDSSTDIETTLASLC 107
Query: 132 ENLSPKEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLR 191
NLSPKEQTV+LKEQ WERV+RVF FF+S + YVPNVIHYNIVLRALGRA KWDELRL
Sbjct: 108 LNLSPKEQTVLLKEQTRWERVLRVFRFFQSHQSYVPNVIHYNIVLRALGRAGKWDELRLC 167
Query: 192 WIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKE 251
WIEMA NGVLPTNNTYGMLVDVYGKAGL+KEALLWIKHM R FPDEVTM TVVRV K
Sbjct: 168 WIEMAHNGVLPTNNTYGMLVDVYGKAGLVKEALLWIKHMGQRMHFPDEVTMATVVRVFKN 227
Query: 252 VGEFDSADRFYKDWCLGRXXXXXXXXXXXXXXGSM--PVSFKHFLSTELFRTGGRNPISR 309
GEFD ADRF+K WC G+ GS PV+ K FLS ELF+ G RNPI +
Sbjct: 228 SGEFDRADRFFKGWCAGKVDLDLDSIDDFPKNGSAQSPVNLKQFLSMELFKVGARNPIEK 287
Query: 310 NMGLLD-MGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMI 368
++ +S RKPRLTST+NTLIDLYGKAGRL DAAN+F+EMLKSGV +DT+TFNTMI
Sbjct: 288 SLHFASGSDSSPRKPRLTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMI 347
Query: 369 YTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLF 428
+TCG+HG+LSEAE+L MEE ISPDTKTYNILLSL+AD G+I AAL YY KIR+VGLF
Sbjct: 348 HTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLF 407
Query: 429 PDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKII 488
PD+VT RA+LHILCQR MV E EAVI EM++ + IDEHSVP +M+MY+NEGL+ QAK +
Sbjct: 408 PDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKAL 467
Query: 489 FKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGK 548
F++ QLD LSS TLAA+IDVYAEKGLW EAETVFYGKR++ GQ+ V+EYNVMIKAYGK
Sbjct: 468 FERFQLDCVLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGK 527
Query: 549 SKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLT 608
+KL++KA SLFK MKN GTWPDECTYNSL QM AG DL+ +A +LAEM +G KP C T
Sbjct: 528 AKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKT 587
Query: 609 FSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMR 668
++++IA+Y RLG LS+AVDL+ M + GV+PNEVVYGSLINGFA +G VEEA+QYFRMM
Sbjct: 588 YAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMME 647
Query: 669 ECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVT 728
E G+ +N IVLTSLIKAYSK+GCLE A++VY+KMK+ EGGPD ASN+M+SL A+LG+V+
Sbjct: 648 EHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAASNSMLSLCADLGIVS 707
Query: 729 EAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMA 788
EAES+FN +REKG D +SFA MMYLYK MGMLDEAI+ AEEM+ SGLL D S+NQVMA
Sbjct: 708 EAESIFNALREKGTCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLSDCTSFNQVMA 767
Query: 789 CFATNGQLRQCGELLHEMLTQ-KLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKP 847
C+A +GQL +C EL HEML + KLL D GTFK LFT+LKKGG P EAV QLQ++Y E KP
Sbjct: 768 CYAADGQLSECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAVSQLQTAYNEAKP 827
Query: 848 YASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFM 907
A+ AI +++S +GL A AL +C+ L E + F YN IY + +SG D AL +M
Sbjct: 828 LATPAITATLFSAMGLYAYALESCQELTSGEIPREHFAYNAVIYTYSASGDIDMALKAYM 887
Query: 908 KMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNAN 967
+M ++GLEPDIVT LVG YGKAG+VEGVKR+HS+L +G++EP+++LFKAV DAY +AN
Sbjct: 888 RMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRLTFGELEPSQSLFKAVRDAYVSAN 947
Query: 968 REDLADLACQEMRTAFES 985
R+DLAD+ +EM AFE+
Sbjct: 948 RQDLADVVKKEMSIAFEA 965
|
|
| TAIR|locus:2094573 AT3G23020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
Identities = 211/540 (39%), Positives = 345/540 (63%)
Query: 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMM 387
TYNT+ID YGK+G++++A+ F ML+ G+ T+TFNTMI+ G++G L E +L M
Sbjct: 300 TYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTM 359
Query: 388 EESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMV 447
+ +PDT+TYNIL+SL+ +I A Y+ ++++ GL PD V+ R +L+ R+MV
Sbjct: 360 K-LHCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMV 418
Query: 448 QEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAII 507
+EAE +I EM+ + IDE++ + +MY+ +L ++ FK+ + G +SS+ +A I
Sbjct: 419 EEAEGLIAEMDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGNMSSEGYSANI 478
Query: 508 DVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGT 567
D Y E+G +EAE VF +++ K++V+EYNVMIKAYG SK +KA LF+ M + G
Sbjct: 479 DAYGERGYLSEAERVFICCQEV--NKRTVIEYNVMIKAYGISKSCEKACELFESMMSYGV 536
Query: 568 WPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVD 627
PD+CTYN+LVQ+ A D+ + L +M+ G+ C+ + +VI+++ +LGQL+ A +
Sbjct: 537 TPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEE 596
Query: 628 LFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYS 687
++ EM +EP+ VVYG LIN FA TG V++A+ Y M+E G+ N ++ SLIK Y+
Sbjct: 597 VYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYT 656
Query: 688 KIGCLEGAKQVYEKMKEMEGG---PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD 744
K+G L+ A+ +Y K+ + PD SN MI+LY+E MV +AE++F+ ++++G+ +
Sbjct: 657 KVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQRGEAN 716
Query: 745 AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804
+FA M+ +YK G +EA A++M+ +L D +SYN V+ FA +G+ ++ E
Sbjct: 717 EFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLFALDGRFKEAVETFK 776
Query: 805 EMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQS-SYQEVKPYASEAIITSVYSVVGL 863
EM++ + PD+ TFK L TIL K G +AV++++ +E+K E I+++ S+VG+
Sbjct: 777 EMVSSGIQPDDSTFKSLGTILMKLGMSKKAVRKIEEIRKKEIKR-GLELWISTLSSLVGI 835
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 6.3e-49, P = 6.3e-49
Identities = 166/648 (25%), Positives = 300/648 (46%)
Query: 359 VDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRY 418
+D +I G G +S A +F ++E S D +Y L+S +A+ G A+
Sbjct: 171 LDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNV 230
Query: 419 YWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIE-MEKCGLHIDEHSVPGVMKMYI 477
+ K+ E G P +T IL++ + ++E M+ G+ D ++ ++
Sbjct: 231 FKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITC-C 289
Query: 478 NEGLLHQ-AKIIFKKCQLDGGLSSK-TLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKS 535
G LHQ A +F++ + G K T A++DVY + EA V + L G S
Sbjct: 290 KRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVL-NEMVLNGFSPS 348
Query: 536 VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLA 595
+V YN +I AY + + D+A L M GT PD TY +L+ F + A+ +
Sbjct: 349 IVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFE 408
Query: 596 EMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG 655
EM+ AG KP TF++ I Y G+ + + +F E+ G+ P+ V + +L+ F G
Sbjct: 409 EMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNG 468
Query: 656 KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASN 715
E F+ M+ G + +LI AYS+ G E A VY +M + PD N
Sbjct: 469 MDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYN 528
Query: 716 TMISLYAELGMVTEAESMFNDIRE-KGQVDAVSFAAMMYLY---KTMGMLDEAIDAAEEM 771
T+++ A GM ++E + ++ + + + + +++ ++++ Y K +G++ AEE+
Sbjct: 529 TVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSL---AEEV 585
Query: 772 KLSGLL--RDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGG 829
SG++ R V+ V+ C + L + E+ + PD T + +I +
Sbjct: 586 -YSGVIEPRAVLLKTLVLVCSKCD-LLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQ 643
Query: 830 FPIEAVKQLQSSYQEVKPYA-SEAIITSVYSVVGLNALALGTCETLIK---AEAYLDSFI 885
+A L Y + + + S A S+ + +A G E +++ A+ I
Sbjct: 644 MVAKANGVLD--YMKERGFTPSMATYNSLMYMHSRSA-DFGKSEEILREILAKGIKPDII 700
Query: 886 -YNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVE-GVKRIHSQ 943
YN IYA+ + + A F +M + G+ PD++T +G Y + E + +
Sbjct: 701 SYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYM 760
Query: 944 LKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTAF-ESPEHDD 990
+K+G PN+N + +++D Y NR+D A L +++R +P+ +D
Sbjct: 761 IKHG-CRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAPKGED 807
|
|
| TAIR|locus:2177028 AT5G12100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 455 (165.2 bits), Expect = 7.6e-48, Sum P(2) = 7.6e-48
Identities = 134/497 (26%), Positives = 237/497 (47%)
Query: 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMM 387
TYNTLID Y KAG + + V M + ITFNT++ G + +AE + M
Sbjct: 251 TYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEM 310
Query: 388 EESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMV 447
++ PD T++IL Y+ AAL Y + G+ ++ T +L+ LC+ +
Sbjct: 311 KDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKI 370
Query: 448 QEAEAVI-IEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLA-- 504
++AE ++ EM K GL +E ++ Y +G L A++ + + G + LA
Sbjct: 371 EKAEEILGREMAK-GLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQG-MKPDHLAYN 428
Query: 505 AIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564
+I + E G AE K L G SV YN++I YG+ +DK F + K M++
Sbjct: 429 CLIRRFCELGEMENAEKEV-NKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMED 487
Query: 565 LGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSN 624
GT P+ +Y +L+ G + +A + +M+ G P+ ++ +I G++ +
Sbjct: 488 NGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIED 547
Query: 625 AVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684
A EM + G+E N V Y +LI+G + TGK+ EA + GL + SLI
Sbjct: 548 AFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLIS 607
Query: 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD 744
Y G ++ +YE+MK P + +ISL + G + E +F ++ K D
Sbjct: 608 GYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEG-IELTERLFGEMSLKP--D 664
Query: 745 AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804
+ + +++ Y G +++A + ++M + D +YN ++ G+L + L+
Sbjct: 665 LLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLID 724
Query: 805 EMLTQKLLPDNGTFKVL 821
EM +++ P+ T+ ++
Sbjct: 725 EMNAREMEPEADTYNII 741
|
|
| TAIR|locus:2054331 EMB2654 "EMBRYO DEFECTIVE 2654" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 1.7e-44, P = 1.7e-44
Identities = 144/578 (24%), Positives = 277/578 (47%)
Query: 305 NPISRNMGLL-DMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTIT 363
N + + GL +M KP TY+ LI+ +G+AG+ + A N+ +ML++ +A T
Sbjct: 157 NWVDQARGLFFEMQKWSCKPD-AETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRST 215
Query: 364 FNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIR 423
+N +I CGS GN EA + M ++ + PD T+NI+LS Y + AL Y+ ++
Sbjct: 216 YNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMK 275
Query: 424 EVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEM-EK-CGLHIDEHSVPGVMKMYINEGL 481
+ PD+ T I++ L + +A + M EK D + +M +Y +G
Sbjct: 276 GAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGE 335
Query: 482 LHQAKIIFKKCQLDGGLSSKTLA--AIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEY 539
+ + +F+ +G L ++ A++ YA G+ A +V G G VV Y
Sbjct: 336 IENCRAVFEAMVAEG-LKPNIVSYNALMGAYAVHGMSGTALSVL-GDIKQNGIIPDVVSY 393
Query: 540 NVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQG 599
++ +YG+S+ KA +F +M+ P+ TYN+L+ + + +AV++ +M+
Sbjct: 394 TCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQ 453
Query: 600 AGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEE 659
G KP ++ +++AA +R + N + + G+ N Y S I + ++E+
Sbjct: 454 DGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEK 513
Query: 660 ALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719
A+ ++ MR+ + A+ + T LI ++ A ++M+++ ++++
Sbjct: 514 AIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLC 573
Query: 720 LYAELGMVTEAESMFNDIREKG-QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR 778
Y++ G VTEAES+FN ++ G + D +++ +M++ Y +A + EM+ +G+
Sbjct: 574 AYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEP 633
Query: 779 DVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQL 838
D I+ + +M F GQ L+ +++ +K +P G V F I ++ K+
Sbjct: 634 DSIACSALMRAFNKGGQPSNVFVLM-DLMREKEIPFTGA--VFFEIFSACN-TLQEWKRA 689
Query: 839 QSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIK 876
Q + PY I ++ L + G E ++K
Sbjct: 690 IDLIQMMDPYLPSLSIGLTNQMLHLFGKS-GKVEAMMK 726
|
|
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 9.4e-44, Sum P(2) = 9.4e-44
Identities = 190/830 (22%), Positives = 359/830 (43%)
Query: 167 PNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLW 226
P++ Y+ ++ LG+ + D + EM G+ P T+ + + V G+AG I EA
Sbjct: 221 PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEI 280
Query: 227 IKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRXXXXXXXXXXXXXXGSM 286
+K M G PD VT ++ L + D A ++ GR
Sbjct: 281 LKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHK--------------- 325
Query: 287 PVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAA 346
P + + F + R+ S +M P + T+ L+D KAG +A
Sbjct: 326 PDRVTYITLLDRF-SDNRDLDSVKQFWSEMEKDGHVPDVV-TFTILVDALCKAGNFGEAF 383
Query: 347 NVFAEMLKSGVAVDTITFNTMIYTCGS---HGNLSEAEALFCMMEESRISPDTKTYNILL 403
+ M G+ + T+NT+I CG H L +A LF ME + P TY + +
Sbjct: 384 DTLDVMRDQGILPNLHTYNTLI--CGLLRVH-RLDDALELFGNMESLGVKPTAYTYIVFI 440
Query: 404 SLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLH 463
Y G+ +AL + K++ G+ P+ V A L+ L + +EA+ + ++ GL
Sbjct: 441 DYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLV 500
Query: 464 IDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLA--AIIDVYAEKGLWAEAET 521
D + +MK Y G + +A + + ++ G + ++I+ + EA
Sbjct: 501 PDSVTYNMMMKCYSKVGEIDEAIKLLSE-MMENGCEPDVIVVNSLINTLYKADRVDEAWK 559
Query: 522 VFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMF 581
+F +++ K +VV YN ++ GK+ +A LF+ M G P+ T+N+L
Sbjct: 560 MFMRMKEMK-LKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCL 618
Query: 582 AGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE 641
D + A+ +L +M G P T++++I + GQ+ A+ FH+M++ V P+
Sbjct: 619 CKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDF 677
Query: 642 VVYGSLINGFAATGKVEEALQYF-RMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYE 700
V +L+ G +E+A + + C + LI + ++ A E
Sbjct: 678 VTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSE 737
Query: 701 KMKEMEGGPDTVASNTMISL--YA-ELGMVTEAESMFNDI-REKG-QVDAVSFAAMMYLY 755
++ + G + ++ + Y+ + V+ A ++F ++ G Q ++ ++
Sbjct: 738 RL--VANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGL 795
Query: 756 KTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDN 815
M++ A D ++K +G + DV +YN ++ + +G++ + EL EM T + +
Sbjct: 796 LEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANT 855
Query: 816 GTFKVLFTILKKGGFPIEAVKQLQS--SYQEVKPYA-SEAIITSVYSVVGLNALALGTCE 872
T ++ + L K G +A+ S ++ P A + + S G A E
Sbjct: 856 ITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFE 915
Query: 873 TLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAG 932
++ + IYN+ I F +G+ D A F +M+ +G+ PD+ T LV C G
Sbjct: 916 GMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVG 975
Query: 933 LVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTA 982
V+ +LK + P+ + +I+ ++R + A + EM+T+
Sbjct: 976 RVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTS 1025
|
|
| TAIR|locus:2178037 AT5G39980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 131/527 (24%), Positives = 261/527 (49%)
Query: 305 NPISRNMGLLDMGNSVRK--PRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTI 362
N R++ LLD + K P + + YN ++ +A + A +F EM + +A D
Sbjct: 133 NDWQRSLALLDWVHEEAKYTPSVFA-YNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRY 191
Query: 363 TFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKI 422
T++T+I + G G A + ME+ R+S D Y+ L+ L + + + A+ + ++
Sbjct: 192 TYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRL 251
Query: 423 REVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYI-NEGL 481
+ G+ PD V +++++ + + +EA +I EM + G+ + S ++ +Y+ N
Sbjct: 252 KRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKF 311
Query: 482 LHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNV 541
L + + +++ L T +IDVY + + EA+ +F+ R + + +VV YN
Sbjct: 312 LEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKM-DIEPNVVSYNT 370
Query: 542 MIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAG 601
+++ YG+++L+ +A LF++M+ + TYN++++++ +A +L+ EMQ G
Sbjct: 371 ILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRG 430
Query: 602 FKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEAL 661
+P +T+S++I+ + + G+L A LF ++R +GVE ++V+Y ++I + G + A
Sbjct: 431 IEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAK 490
Query: 662 QYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLY 721
R++ E L N I + I +K G E A V+ + E D MI+LY
Sbjct: 491 ---RLLHELKLPDN-IPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLY 546
Query: 722 AELGMVTEAESMFNDIREKGQV-DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG-LLRD 779
+ +F +R G D+ A ++ Y ++A EM+ G + D
Sbjct: 547 SRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPD 606
Query: 780 VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPD-NGTFKVLFTIL 825
+ + Q+++ +++ E++ E L Q+L D N K L ++
Sbjct: 607 EVHF-QMLSLYSSKKDF----EMV-ESLFQRLESDPNVNSKELHLVV 647
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 444 (161.4 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 132/534 (24%), Positives = 245/534 (45%)
Query: 313 LLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCG 372
+L+M N +YN ++++ + AANVF +ML + TF ++
Sbjct: 169 MLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFC 228
Query: 373 SHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSV 432
+ + A +L M + P++ Y L+ + +N AL+ ++ +G PD+
Sbjct: 229 AVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAE 288
Query: 433 TQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKC 492
T ++ LC+ + + EA ++ M G D+ + +M G + AK +F +
Sbjct: 289 TFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRI 348
Query: 493 QLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLY 552
+ TL I + G +A+ V G V YN +I Y K L
Sbjct: 349 PKPEIVIFNTL---IHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLV 405
Query: 553 DKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSV 612
A + M+N G P+ +Y LV F + +A ++L EM G KP + F+ +
Sbjct: 406 GLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCL 465
Query: 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGL 672
I+A+ + ++ AV++F EM R G +P+ + SLI+G +++ AL R M G+
Sbjct: 466 ISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV 525
Query: 673 WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGP-DTVASNTMISLYAELGMVTEAE 731
AN + +LI A+ + G ++ A+++ +M +G P D + N++I G V +A
Sbjct: 526 VANTVTYNTLINAFLRRGEIKEARKLVNEMV-FQGSPLDEITYNSLIKGLCRAGEVDKAR 584
Query: 732 SMFNDIREKGQVDA-VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACF 790
S+F + G + +S ++ GM++EA++ +EM L G D++++N ++
Sbjct: 585 SLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGL 644
Query: 791 ATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQE 844
G++ + ++ + + PD TF L + L KGGF +A L ++
Sbjct: 645 CRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIED 698
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 434 (157.8 bits), Expect = 3.1e-40, Sum P(2) = 3.1e-40
Identities = 144/648 (22%), Positives = 282/648 (43%)
Query: 327 STYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCM 386
S Y TLI + +F +M + G F T+I G + A +L
Sbjct: 169 SAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDE 228
Query: 387 MEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNM 446
M+ S + D YN+ + + VG ++ A +++ +I GL PD VT +++ +LC+ N
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANR 288
Query: 447 VQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSK-TLAA 505
+ EA + +EK ++ ++ Y + G +A + ++ + G + S
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNC 348
Query: 506 IIDVYAEKGLWAEAETVFYG-KRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564
I+ + G EA VF K+D ++ YN++I ++ D AF L M+
Sbjct: 349 ILTCLRKMGKVDEALKVFEEMKKDAA---PNLSTYNILIDMLCRAGKLDTAFELRDSMQK 405
Query: 565 LGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSN 624
G +P+ T N +V + +A + EM P +TF S+I ++G++ +
Sbjct: 406 AGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDD 465
Query: 625 AVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684
A ++ +M + N +VY SLI F G+ E+ + ++ M + +L + +
Sbjct: 466 AYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMD 525
Query: 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV- 743
K G E + ++E++K PD + + +I + G E +F ++E+G V
Sbjct: 526 CMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVL 585
Query: 744 DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELL 803
D ++ ++ + G +++A EEMK G V++Y V+ A +L + L
Sbjct: 586 DTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF 645
Query: 804 HEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQE-VKP--YASEAIITSVYSV 860
E ++++ + + L K G EA L+ Q+ + P Y +++ ++
Sbjct: 646 EEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKA 705
Query: 861 VGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVT 920
+N AL +++ + + + Y + I K +KA + +M QG++P ++
Sbjct: 706 EEINE-ALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTIS 764
Query: 921 CINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANR 968
++ KAG + + + K P+ + A+I+ N NR
Sbjct: 765 YTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNR 812
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 137/521 (26%), Positives = 238/521 (45%)
Query: 328 TYNTLIDLYGKAGR-LQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCM 386
+YN ++D ++ R + A NVF EML+S V+ + T+N +I GN+ A LF
Sbjct: 171 SYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDK 230
Query: 387 MEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNM 446
ME P+ TYN L+ Y + I+ + + GL P+ ++ +++ LC+
Sbjct: 231 METKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGR 290
Query: 447 VQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSK--TLA 504
++E V+ EM + G +DE + ++K Y EG HQA ++ + L GL+ T
Sbjct: 291 MKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAE-MLRHGLTPSVITYT 349
Query: 505 AIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564
++I + G A F + + G + Y ++ + + ++A+ + + M +
Sbjct: 350 SLIHSMCKAGNMNRAME-FLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMND 408
Query: 565 LGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSN 624
G P TYN+L+ M A+ +L +M+ G P +++S+V++ + R +
Sbjct: 409 NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDE 468
Query: 625 AVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684
A+ + EM G++P+ + Y SLI GF + +EA + M GL ++ T+LI
Sbjct: 469 ALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALIN 528
Query: 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEA----------ESMF 734
AY G LE A Q++ +M E PD V + +I+ + EA ES+
Sbjct: 529 AYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVP 588
Query: 735 NDIREKGQVDAVS---FAAMMYLYKTM---GMLDEAIDAAEEMKLSGLLRDVISYNQVMA 788
+D+ ++ S F +++ L K GM+ EA E M D +YN ++
Sbjct: 589 SDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIH 648
Query: 789 CFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGG 829
G +R+ L EM+ L T L L K G
Sbjct: 649 GHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEG 689
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C9U0 | PP118_ARATH | No assigned EC number | 0.6515 | 0.9093 | 0.9212 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1004 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-29 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-23 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-29
Identities = 114/484 (23%), Positives = 204/484 (42%), Gaps = 27/484 (5%)
Query: 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMM 387
++N L+ Y KAG +A ++ ML +GV D TF ++ TCG +L+ + +
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213
Query: 388 EESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMV 447
D N L+++Y G++ +A + ++ D ++ A++ +
Sbjct: 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGEC 269
Query: 448 QEAEAVIIEMEKCGLHIDEH-----SVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKT 502
E + M L +D SV ++ +E L + K +S
Sbjct: 270 LEGLELFFTMR--ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS--V 325
Query: 503 LAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVM 562
++I +Y G W EAE VF + K V + MI Y K+ L DKA + +M
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRM-----ETKDAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 563 KNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQL 622
+ PDE T S++ A + V L + G + +++I Y++ +
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
Query: 623 SNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSL 682
A+++FH + V + + S+I G + EAL +FR M L N + L +
Sbjct: 441 DKALEVFHNIPEKDV----ISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAA 495
Query: 683 IKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQ 742
+ A ++IG L K+++ + G D N ++ LY G + A + FN EK
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEK-- 552
Query: 743 VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGEL 802
D VS+ ++ Y G A++ M SG+ D +++ ++ + +G + Q E
Sbjct: 553 -DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611
Query: 803 LHEM 806
H M
Sbjct: 612 FHSM 615
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 1e-23
Identities = 106/446 (23%), Positives = 195/446 (43%), Gaps = 91/446 (20%)
Query: 526 KRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGD 585
KR L+ K + + KA K + +AF K+++N P T+N L+ + A
Sbjct: 398 KRGLLDMDK--IYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQ 451
Query: 586 LMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYG 645
+ A+ +L +Q AG K C ++++I+ A+ G++ ++FHEM AGVE N +G
Sbjct: 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511
Query: 646 SLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIG--------------- 690
+LI+G A G+V +A + +MR + +++V +LI A + G
Sbjct: 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571
Query: 691 -----------------CLEG-----AKQVYEKMKE--MEGGPD--TVASNTMISLYAEL 724
C AK+VY+ + E ++G P+ T+A N+ ++
Sbjct: 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS----CSQK 627
Query: 725 GMVTEAESMFNDIREKG-QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISY 783
G A S+++D+++KG + D V F+A++ + G LD+A + ++ + G+ +SY
Sbjct: 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 784 NQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSY- 842
+ +M + ++ EL ++ + KL P T L T L +G QL +
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG-------NQLPKALE 740
Query: 843 --QEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKND 900
E+K LG C I Y++ + A + D
Sbjct: 741 VLSEMK--------------------RLGLCPNTIT---------YSILLVASERKDDAD 771
Query: 901 KALNTFMKMLDQGLEPDIVTCINLVG 926
L+ + + G++P++V C + G
Sbjct: 772 VGLDLLSQAKEDGIKPNLVMCRCITG 797
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-23
Identities = 83/387 (21%), Positives = 157/387 (40%), Gaps = 78/387 (20%)
Query: 533 KKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWP-DECTYNSLVQMFAGGDLMGQAV 591
+KS V I+ + +A LF++++ + TY++LV+ +
Sbjct: 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVK 143
Query: 592 DLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGF 651
+ ++ +GF+P + V+ + + G L +A LF EM E N +G++I G
Sbjct: 144 AVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGL 199
Query: 652 AATGKVEEALQYFRMMRE-----------------CGLWA------------------NQ 676
G EA FR M E GL + +
Sbjct: 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259
Query: 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFND 736
V +LI YSK G +E A+ V++ M E TVA N+M++ YA G EA ++ +
Sbjct: 260 FVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315
Query: 737 IREKG-QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL------------------- 776
+R+ G +D +F+ M+ ++ + +L+ A A + +G
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375
Query: 777 ------------LRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTI 824
+++IS+N ++A + +G+ + E+ M+ + + P++ TF + +
Sbjct: 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 825 LKKGGFPIEA--VKQLQSSYQEVKPYA 849
+ G + + Q S +KP A
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRA 462
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 6e-21
Identities = 73/276 (26%), Positives = 137/276 (49%), Gaps = 12/276 (4%)
Query: 533 KKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAG-GDL-MGQA 590
++ + +NV++ Y K+ +D+A L+ M G PD T+ +++ G DL G+
Sbjct: 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208
Query: 591 VDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLING 650
V A + GF+ +++I Y + G + +A +F M R + + + ++I+G
Sbjct: 209 VH--AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISG 262
Query: 651 FAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD 710
+ G+ E L+ F MRE + + + +TS+I A +G ++++ + + D
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEE 770
N++I +Y LG EAE +F+ + K DAVS+ AM+ Y+ G+ D+A++
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETK---DAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 771 MKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEM 806
M+ + D I+ V++ A G L G LHE+
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDL-DVGVKLHEL 414
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 6e-21
Identities = 103/494 (20%), Positives = 201/494 (40%), Gaps = 64/494 (12%)
Query: 303 GRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSG-VAVDT 361
N ++ G + P YN L+ + GR++D ++ +M K G + +D
Sbjct: 353 EENSLAAYNGGVSGKRKS--PEYIDAYNRLL----RDGRIKDCIDLLEDMEKRGLLDMDK 406
Query: 362 ITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWK 421
I C + EA ++ +S T+N+L+S+ A +I+ ALR
Sbjct: 407 IYHAKFFKACKKQRAVKEAFRFAKLIRNPTLS----TFNMLMSVCASSQDIDGALRVLRL 462
Query: 422 IREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGL 481
++E GL D ++ + V V EM G+ + H
Sbjct: 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH-------------- 508
Query: 482 LHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKK---SVVE 538
T A+ID A G A+A +G ++ K V
Sbjct: 509 --------------------TFGALIDGCARAGQVAKA----FGAYGIMRSKNVKPDRVV 544
Query: 539 YNVMIKAYGKSKLYDKAFSLFKVMKNLGT--WPDECTYNSLVQMFAGGDLMGQAVDLLAE 596
+N +I A G+S D+AF + MK PD T +L++ A + +A ++
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 597 MQGAGFK--PQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAAT 654
+ K P+ T + + ++ G A+ ++ +M++ GV+P+EV + +L++
Sbjct: 605 IHEYNIKGTPEVYTI--AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 655 GKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVAS 714
G +++A + + R+ G+ + +SL+ A S + A ++YE +K ++ P
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722
Query: 715 NTMISLYAELGMVTEAESMFNDIREKGQV-DAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773
N +I+ E + +A + ++++ G + ++++ ++ + D +D L
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL-----L 777
Query: 774 SGLLRDVISYNQVM 787
S D I N VM
Sbjct: 778 SQAKEDGIKPNLVM 791
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 1e-19
Identities = 78/325 (24%), Positives = 139/325 (42%), Gaps = 41/325 (12%)
Query: 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEA-EALFCM 386
T+ LID +AG++ A + M V D + FN +I CG G + A + L M
Sbjct: 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568
Query: 387 MEESR-ISPDTKTYNILLSLYADVGNINAALRYYWKIREVGL--FPDSVTQRAILHILCQ 443
E+ I PD T L+ A+ G ++ A Y I E + P+ T ++ Q
Sbjct: 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT--IAVNSCSQ 626
Query: 444 RNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTL 503
+ A ++ +M+K G+ DE +F
Sbjct: 627 KGDWDFALSIYDDMKKKGVKPDE---------------------VF-------------F 652
Query: 504 AAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMK 563
+A++DV G +A + R G K V Y+ ++ A +K + KA L++ +K
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 564 NLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLS 623
++ P T N+L+ G+ + +A+++L+EM+ G P +T+S ++ A R
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 624 NAVDLFHEMRRAGVEPNEVVYGSLI 648
+DL + + G++PN V+ +
Sbjct: 772 VGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 3e-18
Identities = 87/373 (23%), Positives = 168/373 (45%), Gaps = 17/373 (4%)
Query: 320 VRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSE 379
+R P L ST+N L+ + + + A V + ++G+ D + T+I TC G +
Sbjct: 432 IRNPTL-STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 380 AEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILH 439
+F M + + + T+ L+ A G + A Y +R + PD V A++
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 440 ILCQRNMVQEAEAVIIEMEKCGLHID-EH-SVPGVMKMYINEGLLHQAKIIFK---KCQL 494
Q V A V+ EM+ ID +H +V +MK N G + +AK +++ + +
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 495 DGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSV----VEYNVMIKAYGKSK 550
G T+A ++ ++KG W A +++ D+ +KK V V ++ ++ G +
Sbjct: 611 KGTPEVYTIA--VNSCSQKGDWDFALSIY---DDM--KKKGVKPDEVFFSALVDVAGHAG 663
Query: 551 LYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFS 610
DKAF + + + G +Y+SL+ + +A++L +++ +P T +
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723
Query: 611 SVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMREC 670
++I A QL A+++ EM+R G+ PN + Y L+ + L +E
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783
Query: 671 GLWANQIVLTSLI 683
G+ N ++ +
Sbjct: 784 GIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 5e-18
Identities = 68/308 (22%), Positives = 139/308 (45%), Gaps = 26/308 (8%)
Query: 506 IIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNL 565
++ ++ + G+ +A +F + +++ + +I + Y +AF+LF+ M
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWED 218
Query: 566 GTWPDECTYNSLVQMF-----AGGDLMGQAVDLLAEMQGAGFKPQCLTFSS--VIAAYAR 618
G + + V M G GQ + G TF S +I Y++
Sbjct: 219 G---SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD----TFVSCALIDMYSK 271
Query: 619 LGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIV 678
G + +A +F M V + S++ G+A G EEAL + MR+ G+ +Q
Sbjct: 272 CGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIR 738
+ +I+ +S++ LE AKQ + + D VA+ ++ LY++ G + +A ++F+ +
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 739 EKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQ 798
K + +S+ A++ Y G +A++ E M G+ + +++ V++ +G Q
Sbjct: 388 RK---NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444
Query: 799 CGELLHEM 806
E+ M
Sbjct: 445 GWEIFQSM 452
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 2e-16
Identities = 122/592 (20%), Positives = 239/592 (40%), Gaps = 66/592 (11%)
Query: 289 SFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANV 348
S H +++L + + + LL+ +R P Y L L +++ + V
Sbjct: 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRV 108
Query: 349 FAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYAD 408
+ L S ++ N M+ G L A +F M E D ++N+L+ YA
Sbjct: 109 CSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAK 164
Query: 409 VGNINAALRYYWKIREVGLFPDSVTQRAILHI---LCQRNMVQEAEAVIIEMEKCGLHID 465
G + AL Y ++ G+ PD T +L + +E A ++ + G +D
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV---RFGFELD 221
Query: 466 EHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYG 525
V ++ MY+ G + A+++F + +S A+I Y E G E +F+
Sbjct: 222 VDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWN---AMISGYFENGECLEGLELFFT 278
Query: 526 KRDLVGQKKSVVEYNVM-----IKAYGKSKLYDKAFS--LFKVMKNLGTWPDECTYNSLV 578
R+L V+ ++M I A L D+ + + G D NSL+
Sbjct: 279 MREL------SVDPDLMTITSVISACE--LLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330
Query: 579 QMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVE 638
QM+ G+A + + M+ ++++++I+ Y + G A++ + M + V
Sbjct: 331 QMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386
Query: 639 PNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQV 698
P+E+ S+++ A G ++ ++ + GL + +V +LI+ YSK C++ A +V
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446
Query: 699 YEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758
+ + E D ++ ++I+ EA F + + ++V+ A + +
Sbjct: 447 FHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI 502
Query: 759 GML--DEAIDA---AEEMKLSGLL-------------------------RDVISYNQVMA 788
G L + I A + G L +DV+S+N ++
Sbjct: 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLT 562
Query: 789 CFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQS 840
+ +G+ EL + M+ + PD TF L + G + ++ S
Sbjct: 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 2e-15
Identities = 100/479 (20%), Positives = 188/479 (39%), Gaps = 92/479 (19%)
Query: 371 CGSHGNLSEAEALFCMME-ESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFP 429
CG H EA LF ++E + TY+ L+ + +I YW + G P
Sbjct: 100 CGRH---REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156
Query: 430 DSVTQRAIL--HILCQRNMVQEAEAVIIEM-EKCGLHIDEHSVPGVMKMYINEGLLHQAK 486
D +L H+ C M+ +A + EM E+ S ++ ++ G +A
Sbjct: 157 DQYMMNRVLLMHVKC--GMLIDARRLFDEMPERNLA-----SWGTIIGGLVDAGNYREAF 209
Query: 487 IIFKK----------------------------------CQLDGGLSSKTL--AAIIDVY 510
+F++ C L G+ T A+ID+Y
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269
Query: 511 AEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPD 570
++ G +A VF G +K+ V +N M+ Y ++A L+ M++ G D
Sbjct: 270 SKCGDIEDARCVFDGM-----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
Query: 571 ECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFH 630
+ T++ ++++F+ L+ A A + GF + ++++ Y++ G++ +A ++F
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384
Query: 631 EMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIG 690
M R N + + +LI G+ G+ +A++ F M G+ N + +++ A G
Sbjct: 385 RMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440
Query: 691 CLEGAKQVYEKMKEMEG-GPDTVASNTMISLYAELGMVTEAESMFNDI------------ 737
E ++++ M E P + MI L G++ EA +M
Sbjct: 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAAL 500
Query: 738 ---------REKGQVDAV-----------SFAAMMYLYKTMGMLDEAIDAAEEMKLSGL 776
E G++ A ++ ++ LY + G EA E +K GL
Sbjct: 501 LTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 3e-15
Identities = 136/653 (20%), Positives = 266/653 (40%), Gaps = 82/653 (12%)
Query: 373 SHGNLSEAEALFCMMEESRISPDTKTY--------------------------------- 399
SHG L +A L M+E R+ D Y
Sbjct: 63 SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR 122
Query: 400 --NILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEM 457
N +LS++ G + A + K+ E LF +V ++ + EA + M
Sbjct: 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNV----LVGGYAKAGYFDEALCLYHRM 178
Query: 458 EKCGLHIDEHSVPGVMK-----MYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAE 512
G+ D ++ P V++ + G A ++ + L + A+I +Y +
Sbjct: 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV----RFGFELDVDVVNALITMYVK 234
Query: 513 KGLWAEAETVFYG--KRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPD 570
G A VF +RD + +N MI Y ++ + LF M+ L PD
Sbjct: 235 CGDVVSARLVFDRMPRRD-------CISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 571 ECTYNSLVQMFAGGDLMGQAVDLLAEMQG----AGFKPQCLTFSSVIAAYARLGQLSNAV 626
T S++ + +L+G L EM G GF +S+I Y LG A
Sbjct: 288 LMTITSVI---SACELLGD-ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 627 DLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAY 686
+F M V + ++I+G+ G ++AL+ + +M + + ++I + S++ A
Sbjct: 344 KVFSRMETKDA----VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 687 SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAV 746
+ +G L+ +++E + V +N +I +Y++ + +A +F++I EK D +
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK---DVI 456
Query: 747 SFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH-E 805
S+ +++ + EA+ +M L+ L + ++ ++ A G L CG+ +H
Sbjct: 457 SWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALM-CGKEIHAH 514
Query: 806 MLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNA 865
+L + D L + + G A Q S ++V S I+ + Y G +
Sbjct: 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDV---VSWNILLTGYVAHGKGS 571
Query: 866 LALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ-GLEPDIVTCINL 924
+A+ ++++ D + + A SG + L F M ++ + P++ +
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631
Query: 925 VGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQ 977
V G+AG + ++ + + P+ ++ A+++A R +L +LA Q
Sbjct: 632 VDLLGRAGKLT---EAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 4e-14
Identities = 90/419 (21%), Positives = 150/419 (35%), Gaps = 93/419 (22%)
Query: 327 STYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCM 386
S N+LI +Y G +A VF+ M D +++ MI +G +A + +
Sbjct: 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 387 MEESRISPDTKTY-----------------------------------NILLSLYADVGN 411
ME+ +SPD T N L+ +Y+
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 412 INAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVP- 470
I+ AL + I E D ++ +I+ L N EA +I + L + +SV
Sbjct: 440 IDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEA---LIFFRQMLLTLKPNSVTL 492
Query: 471 -GVMKMYINEGLLHQAKIIFKKCQLDG-GLSSKTLAAIIDVYAEKGLWAEAETVFYGKRD 528
+ G L K I G G A++D+Y G A F
Sbjct: 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS--- 549
Query: 529 LVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMG 588
+K VV +N+++ Y A LF M G PDE T+ SL+ + ++
Sbjct: 550 ---HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606
Query: 589 QAVDLLAEMQGA-GFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSL 647
Q ++ M+ P ++ V+ R G+L+ A + ++M + P+ V+G+L
Sbjct: 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGAL 663
Query: 648 ING----------------------------------FAATGKVEEALQYFRMMRECGL 672
+N +A GK +E + + MRE GL
Sbjct: 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-13
Identities = 138/631 (21%), Positives = 249/631 (39%), Gaps = 71/631 (11%)
Query: 340 GRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTY 399
G+L+ A + M + V VD + + C + E + S S +
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124
Query: 400 NILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEK 459
N +LS++ G + A + K+ E LF +V ++ + EA + M
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNV----LVGGYAKAGYFDEALCLYHRMLW 180
Query: 460 CGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEA 519
G+ D ++ P V++ T I D+ +G A
Sbjct: 181 AGVRPDVYTFPCVLR---------------------------TCGGIPDL--ARGREVHA 211
Query: 520 ETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQ 579
V +G V VV N +I Y K A +F M D ++N+++
Sbjct: 212 HVVRFGFELDV----DVV--NALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMIS 261
Query: 580 MFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEP 639
+ + ++L M+ P +T +SVI+A LG ++ + + G
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321
Query: 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVY 699
+ V SLI + + G EA + F M E + + T++I Y K G + A + Y
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRM-ET---KDAVSWTAMISGYEKNGLPDKALETY 377
Query: 700 EKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFA-AMMYLYKTM 758
M++ PD + +++S A LG + + KG + V A A++ +Y
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 759 GMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTF 818
+D+A++ + +DVIS+ ++A N + + +ML L P++ T
Sbjct: 438 KCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL 492
Query: 819 -KVLFTILKKG----GFPIEA-VKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCE 872
L + G G I A V + + P A + +Y G A
Sbjct: 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA----LLDLYVRCGRMNYAWNQFN 548
Query: 873 TLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAG 932
+ K D +N+ + + + GK A+ F +M++ G+ PD VT I+L+ ++G
Sbjct: 549 SHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603
Query: 933 LV-EGVKRIHS-QLKYGKMEPNENLFKAVID 961
+V +G++ HS + KY + PN + V+D
Sbjct: 604 MVTQGLEYFHSMEEKYS-ITPNLKHYACVVD 633
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 7e-13
Identities = 144/606 (23%), Positives = 241/606 (39%), Gaps = 99/606 (16%)
Query: 206 TYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDW 265
++ +LV Y KAG EAL M G+ PD T V+R + D
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI----------PDL 203
Query: 266 CLGR------LELD-DLELDSTDDLGSMPVSFKHFLSTELF--RTGGRNPISRNM----- 311
GR + +L++D + L +M V +S L R R+ IS N
Sbjct: 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY 263
Query: 312 --------GL---LDM-GNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAV 359
GL M SV +T T ++I G + + ++K+G AV
Sbjct: 264 FENGECLEGLELFFTMRELSVDPDLMTIT--SVISACELLGDERLGREMHGYVVKTGFAV 321
Query: 360 DTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYY 419
D N++I S G+ EAE +F ME + D ++ ++S Y G + AL Y
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETY 377
Query: 420 WKIREVGLFPDSVTQRAI---------------LHILCQR----NMVQEAEAVIIEMEKC 460
+ + + PD +T ++ LH L +R + V A A+I KC
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 461 GLHIDE-----HSVPG---VMKMYINEGLL-----HQAKIIFKKCQLDGGLSSKTLAAII 507
ID+ H++P + I GL +A I F++ L +S TL A +
Sbjct: 438 K-CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAAL 496
Query: 508 DVYAEKG-LWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVM-KNL 565
A G L E + R +G + N ++ Y + + A++ F K++
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLP--NALLDLYVRCGRMNYAWNQFNSHEKDV 554
Query: 566 GTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNA 625
+W N L+ + AV+L M +G P +TF S++ A +R G ++
Sbjct: 555 VSW------NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608
Query: 626 VDLFHEMR-RAGVEPNEVVYGSLINGFAATGKVEEALQYFRMM---RECGLWANQIVLTS 681
++ FH M + + PN Y +++ GK+ EA + M + +W L +
Sbjct: 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG---ALLN 665
Query: 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMI-SLYAELGMVTEAESMFNDIREK 740
+ + + E A Q ++ P++V ++ +LYA+ G E + +RE
Sbjct: 666 ACRIHRHVELGELAAQHIFELD-----PNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720
Query: 741 G-QVDA 745
G VD
Sbjct: 721 GLTVDP 726
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 9e-13
Identities = 119/517 (23%), Positives = 191/517 (36%), Gaps = 84/517 (16%)
Query: 330 NTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEE 389
N LI +Y K G + A VF M + D I++N MI +G E LF M E
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRE 281
Query: 390 SRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQE 449
+ PD T ++S +G+ + + + G D +++ + E
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341
Query: 450 AEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSK-TLAAIID 508
AE V ME D S ++ Y GL +A + + D + T+A+++
Sbjct: 342 AEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
Query: 509 VYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVM--KNLG 566
A G + + + G VV N +I+ Y K K DKA +F + K++
Sbjct: 398 ACACLGD-LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456
Query: 567 TW----------------------------PDECTYNSLVQMFAG-GDLMG----QAVDL 593
+W P+ T + + A G LM A L
Sbjct: 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516
Query: 594 LAEMQGAGFKPQCL---------------TFSS----------VIAAYARLGQLSNAVDL 628
+ GF P L F+S ++ Y G+ S AV+L
Sbjct: 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVEL 576
Query: 629 FHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRE-CGLWANQIVLTSLIKAYS 687
F+ M +GV P+EV + SL+ + +G V + L+YF M E + N ++
Sbjct: 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636
Query: 688 KIGCLEGAKQVYEKMKEMEGGPDTVASNTM-----ISLYAELGMVTEAESMFNDIREKGQ 742
+ G L A Y + +M PD + I + ELG + A+ +F E
Sbjct: 637 RAGKLTEA---YNFINKMPITPDPAVWGALLNACRIHRHVELGELA-AQHIF----ELDP 688
Query: 743 VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD 779
+ + LY G DE + M+ +GL D
Sbjct: 689 NSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 2e-11
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 608 TFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFA 652
T++++I Y + G++ A+ LF+EM++ G++PN Y LI+G
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 4e-11
Identities = 54/230 (23%), Positives = 106/230 (46%), Gaps = 9/230 (3%)
Query: 332 LIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESR 391
LID+Y K G ++DA VF M + T+ +N+M+ HG EA L+ M +S
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 392 ISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAE 451
+S D T++I++ +++ + + A + + + G D V A++ + + +++A
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 452 AVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSK-TLAAIIDVY 510
V M + L S ++ Y N G +A +F++ +G + T A++
Sbjct: 381 NVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
Query: 511 AEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFK 560
GL + +F + K + Y MI+ G+ L D+A+++ +
Sbjct: 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 5e-11
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMI 368
TYNTLID Y K G++++A +F EM K G+ + T++ +I
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 7e-11
Identities = 66/303 (21%), Positives = 126/303 (41%), Gaps = 39/303 (12%)
Query: 172 YNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMK 231
Y ++ ++ K D + + EM GV +T+G L+D +AG + +A M+
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 232 LRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLG--SMPVS 289
+ + PD V N ++ + G D A D ++ + P+
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRA------------------FDVLAEMKAETHPID 576
Query: 290 FKHFLSTELFRTGGRNPISRNMGLLDMG----NSVRKPRLTST---YNTLIDLYGKAGRL 342
H L + N G +D + + + T Y ++ + G
Sbjct: 577 PDHITVGALMKA------CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630
Query: 343 QDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRIS---PDTKTY 399
A +++ +M K GV D + F+ ++ G G+L +A F +++++R T +Y
Sbjct: 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA---FEILQDARKQGIKLGTVSY 687
Query: 400 NILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEK 459
+ L+ ++ N AL Y I+ + L P T A++ LC+ N + +A V+ EM++
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
Query: 460 CGL 462
GL
Sbjct: 748 LGL 750
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 534 KSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFA 582
VV YN +I Y K ++A LF MK G P+ TY+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 3e-10
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 360 DTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLS 404
D +T+NT+I G + EA LF M++ I P+ TY+IL+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 639 PNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK 688
P+ V Y +LI+G+ GKVEEAL+ F M++ G+ N + LI K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 9e-07
Identities = 76/358 (21%), Positives = 138/358 (38%), Gaps = 38/358 (10%)
Query: 646 SLINGFAATGKVEEALQYFRMMR-ECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKE 704
S I A G+ EAL+ F ++ C +L++A + + K VY ++
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151
Query: 705 MEGGPDTVASNTMISLYAELGMVTEAESMFNDIREK----------GQVDAVSFAAMMYL 754
PD N ++ ++ + GM+ +A +F+++ E+ G VDA ++ L
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFAL 211
Query: 755 YKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPD 814
++ + E AE +LR A G+ LH + + +
Sbjct: 212 FR---EMWEDGSDAEPRTFVVMLRASAGLGSARA-----------GQQLHCCVLKTGVVG 257
Query: 815 NGTFK--VLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCE 872
+ TF L + K G IE + + E A +++ Y++ G + AL
Sbjct: 258 D-TFVSCALIDMYSKCG-DIEDARCVFDGMPEKTTVAWNSMLAG-YALHGYSEEALCLYY 314
Query: 873 TLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAG 932
+ + +D F +++ I F + A ++ G DIV LV Y K G
Sbjct: 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374
Query: 933 LVEGVKRIHSQLKYGKMEPNENL--FKAVIDAYRNANREDLADLACQEMRTAFESPEH 988
+E + + ++ P +NL + A+I Y N R A + M +P H
Sbjct: 375 RMEDARNVFDRM------PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 1e-06
Identities = 79/383 (20%), Positives = 159/383 (41%), Gaps = 21/383 (5%)
Query: 613 IAAYARL---GQLSNAVDLFHEMRRAG-VEPNEVVYGSLINGFAATGKVEEALQYFRMMR 668
I AY RL G++ + +DL +M + G ++ +++ + V+EA ++ +++R
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433
Query: 669 ECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVT 728
L ++++ + A S+ ++GA +V ++E D T+IS A+ G V
Sbjct: 434 NPTLSTFNMLMS--VCASSQD--IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489
Query: 729 EAESMFNDIREKG-QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVM 787
+F+++ G + + +F A++ G + +A A M+ + D + +N ++
Sbjct: 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549
Query: 788 ACFATNGQLRQCGELLHEML--TQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEV 845
+ +G + + ++L EM T + PD+ T L G V + + YQ +
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG----QVDRAKEVYQMI 605
Query: 846 KPY------ASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKN 899
Y I + S G AL + + K D ++ + +G
Sbjct: 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665
Query: 900 DKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAV 959
DKA QG++ V+ +L+G A + ++ +K K+ P + A+
Sbjct: 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725
Query: 960 IDAYRNANREDLADLACQEMRTA 982
I A N+ A EM+
Sbjct: 726 ITALCEGNQLPKALEVLSEMKRL 748
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 2e-06
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 167 PNVIHYNIVLRALGRAQKWDE-LRLRWIEMAKNGVLPTNNTYGMLVDVYGK 216
P+V+ YN ++ + K +E L+L + EM K G+ P TY +L+D K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKL-FNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-06
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 362 ITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDT 396
+T+NT+I G + EA LF M+E I PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDT 361
TYNTLID KAGR+++A +F EM + G+ D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 5e-06
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 709 PDTVASNTMISLYAELGMVTEAESMFNDIREKGQV-DAVSFAAMM 752
PD V NT+I Y + G V EA +FN+++++G + +++ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 7e-06
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 206 TYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVL 249
TY L+D Y K G ++EAL MK RGI P+ T + ++ L
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 8e-06
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 394 PDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQ 443
PD TYN L+ Y G + AL+ + ++++ G+ P+ T ++ LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 8e-06
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 636 GVEPNEVVYGSLINGFAATGKVEEALQYFRMMR 668
G++P+ V Y +LI+G G+V+EA++ M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 608 TFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE 641
T++++I + G++ A++LF EM+ G+EP+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 327 STYNTLIDLYGKAGRLQDAANVFAEMLKSGV 357
TYN+LI Y KAG+L++A +F EM + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 5e-05
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 642 VVYGSLINGFAATGKVEEALQYFRMMRECGL 672
V Y SLI+G+ GK+EEAL+ F+ M+E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 608 TFSSVIAAYARLGQLSNAVDLFHEMRRAGV 637
T++S+I+ Y + G+L A++LF EM+ GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 7e-05
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 539 YNVMIKAYGKSKLYDKAFSLFKVMKNLG 566
YN +I Y K+ ++A LFK MK G
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 52/258 (20%), Positives = 90/258 (34%), Gaps = 58/258 (22%)
Query: 152 VIRVFEFFKSQKDY----VPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTY 207
V R E ++ +Y P V Y I + + + WD + +M K GV P +
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 208 GMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCL 267
LVDV G AG + +A ++ + +GI V+ ++++ + A
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA--------- 703
Query: 268 GRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTS 327
LEL ++ S +L T S
Sbjct: 704 -------LEL------------YEDIKSIKLRPT------------------------VS 720
Query: 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMM 387
T N LI + +L A V +EM + G+ +TIT++ ++ + L
Sbjct: 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780
Query: 388 EESRISPDTKTYNILLSL 405
+E I P+ + L
Sbjct: 781 KEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 9e-05
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 779 DVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLF 822
DV++YN ++ + G++ + +L +EM + + P+ T+ +L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 9e-05
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 328 TYNTLIDLYGKAGRLQDAANVFAEM 352
TYNTLID +AGR+ +A + EM
Sbjct: 9 TYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVA 358
TYN L+ KAG A V EM SG+
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 882 DSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVT 920
D YN I + GK ++AL F +M +G++P++ T
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 2e-04
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 608 TFSSVIAAYARLGQLSNAVDLFHEMRRAGVEP 639
T+++++ A A+ G A+ + EM+ +G++P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 5e-04
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 642 VVYGSLINGFAATGKVEEALQYFRMMRECGL 672
V Y +LI+G G+VEEAL+ F+ M+E G+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 539 YNVMIKAYGKSKLYDKAFSLFKVMKNLG 566
YN +I K+ ++A LFK MK G
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 6e-04
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 206 TYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDE 239
TY L+D KAG ++EAL K MK RGI PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 8e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 362 ITFNTMIYTCGSHGNLSEAEALFCMMEESRI 392
+T+N++I G L EA LF M+E +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 8e-04
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 361 TITFNTMIYTCGSHGNLSEAEALFCMMEESRISP 394
T+N ++ G+ A A+ M+ S + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 680 TSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719
+LI Y K G +E A +++ +MK+ P+ + +I
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.002
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 429 PDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHS 468
PD VT ++ C++ V+EA + EM+K G+ + ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 601 GFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMR 633
G KP +T++++I R G++ AV+L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 355 SGVAVDTITFNTMIYTCGSHGNLSEAEALFCMME 388
G+ D +T+NT+I G + EA L ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 715 NTMISLYAELGMVTEAESMFNDIREKG 741
N++IS Y + G + EA +F +++EKG
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1004 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.83 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.83 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.72 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.6 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.58 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.58 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.57 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.5 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.47 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.46 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.45 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.44 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.42 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.4 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.4 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.34 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.32 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.29 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.29 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.29 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.27 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.21 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.17 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.13 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.08 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.06 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.98 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.97 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.94 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.94 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.91 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.86 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.74 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.73 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.73 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.72 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.69 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.66 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.61 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.55 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.54 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.46 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.41 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.37 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.36 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.35 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.35 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.27 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.16 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.13 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.0 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.98 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.94 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.89 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.88 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.86 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.86 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.83 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.82 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.8 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.8 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.76 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.76 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.74 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.73 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.71 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.65 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.64 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.63 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.61 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.57 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.57 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.56 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.54 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.52 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.51 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.51 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.5 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.49 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.48 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.46 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.45 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.44 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.44 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.41 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.36 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.34 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.33 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.31 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.31 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.31 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.3 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.29 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.25 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.25 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.24 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.24 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.2 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.19 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.16 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.14 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.13 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.1 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.09 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.06 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.06 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.06 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.02 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.0 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.98 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.96 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.96 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.93 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.89 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.81 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.8 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.74 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.66 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.6 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.57 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.57 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.55 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.55 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.53 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.52 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.5 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.32 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.31 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.3 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.27 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.24 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.21 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.16 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.1 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.07 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.89 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.81 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.81 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.79 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.73 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.66 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.62 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.51 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.5 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.43 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.36 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.25 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.12 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.98 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.96 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.96 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.94 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.94 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.88 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.76 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.55 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.55 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.54 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.53 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.44 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.41 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.35 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.34 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.33 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.32 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.26 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.24 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.14 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.06 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.03 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.9 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.8 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.79 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.73 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.49 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.47 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.3 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.29 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.07 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 92.99 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.88 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.86 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 92.66 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.5 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.21 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.13 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.91 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.78 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.91 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.79 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.45 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.32 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.18 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.16 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.15 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.89 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.77 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.64 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.3 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.29 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.14 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.13 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.84 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.77 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.73 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.59 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.55 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.38 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.03 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.94 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.32 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.96 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 86.93 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.9 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.69 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 86.42 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 86.37 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.94 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 85.93 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 85.31 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.98 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.84 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 84.73 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.41 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.0 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.62 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.54 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.54 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.22 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.08 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.48 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 81.2 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 81.16 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.66 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.21 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-80 Score=756.30 Aligned_cols=677 Identities=21% Similarity=0.282 Sum_probs=641.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 048751 166 VPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTV 245 (1004)
Q Consensus 166 ~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 245 (1004)
.++..++|.++.+|++.|++++|..+|++|.+.|++|+..+|..++..|.+.+.++.|..++..+.+.|..++...++++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCc
Q 048751 246 VRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRL 325 (1004)
Q Consensus 246 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 325 (1004)
+.+|++.|+++.|.++|++|. +++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~--------------------------------------------------------~~d 151 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP--------------------------------------------------------ERD 151 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC--------------------------------------------------------CCC
Confidence 999999999999999998762 234
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSL 405 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 405 (1004)
..+||.||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.+++..+.+++..|.+.|+.||..+||+||.+
T Consensus 152 ~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~ 231 (857)
T PLN03077 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231 (857)
T ss_pred eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHH
Q 048751 406 YADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQA 485 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 485 (1004)
|++.|++++|.++|++|.+ ||.++|+++|.+|++.|++++|+++|.+|.+.|+.||..+|..++.+|++.|+.+.|
T Consensus 232 y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 9999999999999999964 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048751 486 KIIFKKCQLDG-GLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564 (1004)
Q Consensus 486 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 564 (1004)
.+++..+...+ .++..+++.++.+|++.|++++|.++|++| ..||+.+||.+|.+|++.|++++|+++|++|.+
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-----~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-----ETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC-----CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999997655 678899999999999999999999999997 467899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 048751 565 LGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY 644 (1004)
Q Consensus 565 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 644 (1004)
.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|. .+|..+|
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~ 458 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISW 458 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 4788999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
+.+|.+|++.|+.++|+++|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|++.
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~ 537 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence 9999999999999999999999986 589999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|++++|.++|+.+ .+|..+|++|+.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 9999999999987 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCc
Q 048751 805 EML-TQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDS 883 (1004)
Q Consensus 805 ~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~ 883 (1004)
+|. +.|+.|+..+|..++++|.+.|+.++|.++++++. ..||.
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~------------------------------------~~pd~ 657 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP------------------------------------ITPDP 657 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC------------------------------------CCCCH
Confidence 998 67999999999999999999999999988887652 24678
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHH
Q 048751 884 FIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNEN 954 (1004)
Q Consensus 884 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 954 (1004)
.+|++|+.+|...|+.+.|....+++.+ ++| +...|..|.+.|...|++++|.++.+.|...|+.+++.
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 8899999999888999888888888877 677 46678888888999999999999999998888887764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-76 Score=716.89 Aligned_cols=671 Identities=17% Similarity=0.224 Sum_probs=627.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048751 137 KEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGK 216 (1004)
Q Consensus 137 ~~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 216 (1004)
......+-+.++++.|+.+|+.+.. .|..|+..+|..++..+.+.+.++.+..++..+.+.+..++..++|+|+.+|++
T Consensus 55 n~~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~ 133 (857)
T PLN03077 55 NSQLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Confidence 3334455567899999999999985 578999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhH
Q 048751 217 AGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLST 296 (1004)
Q Consensus 217 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1004)
.|+++.|.++|++|. .||.++|+++|.+|++.|++++|.++|++|...++
T Consensus 134 ~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~-------------------------- 183 (857)
T PLN03077 134 FGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV-------------------------- 183 (857)
T ss_pred CCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------------------------
Confidence 999999999999997 47999999999999999999999999998743221
Q ss_pred HHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 048751 297 ELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGN 376 (1004)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 376 (1004)
.+|..||+.++++|++.++++.+.+++..|.+.|+.||..+||.|+.+|++.|+
T Consensus 184 --------------------------~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 184 --------------------------RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred --------------------------CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 345889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 377 LSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIE 456 (1004)
Q Consensus 377 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (1004)
+++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.++++.|+.+.|.+++..
T Consensus 238 ~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 238 VVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred HHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999999997 4789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCH
Q 048751 457 MEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSV 536 (1004)
Q Consensus 457 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 536 (1004)
|.+.|+.||..+++.++.+|++.|++++|.++|+++.. .+..+|+.++.+|++.|++++|..+|.+|.+ .|..||.
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~Pd~ 389 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQ-DNVSPDE 389 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCCc
Confidence 99999999999999999999999999999999999864 4667899999999999999999999999977 5899999
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048751 537 VEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAY 616 (1004)
Q Consensus 537 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 616 (1004)
.+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~ 465 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGL 465 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999974 6889999999999
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 617 ARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAK 696 (1004)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 696 (1004)
++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.|+.++..+++.|+++|++.|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999986 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HC
Q 048751 697 QVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG-QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK-LS 774 (1004)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 774 (1004)
++|+.+ .+|..+||+++.+|++.|+.++|.++|++|.+.+ .||..+|+.++.+|.+.|++++|.++|++|. +.
T Consensus 545 ~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 545 NQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 999987 5799999999999999999999999999999988 7899999999999999999999999999999 67
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHH
Q 048751 775 GLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAII 854 (1004)
Q Consensus 775 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 854 (1004)
|+.|+..+|+.++.+|++.|++++|.+++++| .+.||..+|..++.+|...|+.+.+....+
T Consensus 620 gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~--------------- 681 (857)
T PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQ--------------- 681 (857)
T ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHH---------------
Confidence 99999999999999999999999999999998 478999999999999988887766654433
Q ss_pred HHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048751 855 TSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIV 919 (1004)
Q Consensus 855 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 919 (1004)
++++.. |.+...|..|.+.|+..|+|++|.++.+.|.+.|+++++-
T Consensus 682 ------------------~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 682 ------------------HIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred ------------------HHHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 334443 4578889999999999999999999999999999998753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-66 Score=612.02 Aligned_cols=471 Identities=19% Similarity=0.271 Sum_probs=235.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSL 405 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 405 (1004)
..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCCCCcHHHHHHHHHhcCCHH
Q 048751 406 YADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEK--CGLHIDEHSVPGVMKMYINEGLLH 483 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~l~~~~~~~g~~~ 483 (1004)
|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 444444444444444444444444444444444444444444444444444443 233333333333333333333333
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 048751 484 QAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMK 563 (1004)
Q Consensus 484 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 563 (1004)
+|.++|+.+.. .+..|+..+||.+|.+|++.|++++|.++|++|.
T Consensus 597 eA~elf~~M~e-----------------------------------~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 597 RAKEVYQMIHE-----------------------------------YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHHH-----------------------------------cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33333322221 2244455555556666666666666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHH
Q 048751 564 NLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVV 643 (1004)
Q Consensus 564 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 643 (1004)
+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+
T Consensus 642 ~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 55555665566666666666666666666666665555556666666666666666666666666666555555566666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048751 644 YGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE 723 (1004)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (1004)
|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~ 801 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 66666666666666666666666655555566666666666666666666666666666555555565555555544321
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 724 LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELL 803 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 803 (1004)
++++|..+.+.+...+. +......+..++|+.+|++|++.|+.||..||+.++.+++..+..+.+..++
T Consensus 802 --~y~ka~~l~~~v~~f~~---------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~ 870 (1060)
T PLN03218 802 --RFEKACALGEPVVSFDS---------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLI 870 (1060)
T ss_pred --HHHHHhhhhhhhhhhhc---------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHH
Confidence 23333333222221110 0001111122345555555555555555555555554444444455554444
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhc
Q 048751 804 HEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQE 844 (1004)
Q Consensus 804 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 844 (1004)
+.|...+..|+..+|..+++++.+. .++|..+++++...
T Consensus 871 ~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 871 ENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 4444444444555555555544221 23455555555443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-65 Score=603.11 Aligned_cols=548 Identities=18% Similarity=0.273 Sum_probs=464.5
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048751 321 RKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGV-AVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTY 399 (1004)
Q Consensus 321 ~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 399 (1004)
..+++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|.+++|..+|+.|.. ||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 3345567788889999999999999999999999885 56777888899999999999999999998874 899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhc
Q 048751 400 NILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINE 479 (1004)
Q Consensus 400 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 479 (1004)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------------------ 502 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------------------ 502 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------------------
Confidence 99999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 048751 480 GLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLF 559 (1004)
Q Consensus 480 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 559 (1004)
..||..+|+.||.+|++.|++++|+++|
T Consensus 503 ----------------------------------------------------v~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 503 ----------------------------------------------------VEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred ----------------------------------------------------CCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 5667888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 048751 560 KVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQG--AGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGV 637 (1004)
Q Consensus 560 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 637 (1004)
++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999976 57889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048751 638 EPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTM 717 (1004)
Q Consensus 638 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 717 (1004)
.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.|
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 718 ISLYAELGMVTEAESMFNDIREKG-QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQL 796 (1004)
Q Consensus 718 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 796 (1004)
+.+|++.|++++|.++|++|.+.+ .+|..+|+.|+.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 999999999999999999998876 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHh
Q 048751 797 RQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIK 876 (1004)
Q Consensus 797 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~ 876 (1004)
++|.+++.+|.+.|+.||..+|..++..|.+ ..++|.+..+.. ..++
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v---------------------------~~f~---- 817 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPV---------------------------VSFD---- 817 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhh---------------------------hhhh----
Confidence 9999999999999999999999998865431 223332221111 0010
Q ss_pred hhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHH
Q 048751 877 AEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLF 956 (1004)
Q Consensus 877 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 956 (1004)
. +......+..++|+.+|++|++.|+.||..||..++.++++.+..+.+..+++.+...+..|+..+|
T Consensus 818 ~------------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y 885 (1060)
T PLN03218 818 S------------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNL 885 (1060)
T ss_pred c------------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhh
Confidence 0 0111112234567778888877788888778877777777777777777777777555666667777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCC
Q 048751 957 KAVIDAYRNANREDLADLACQEMRTAFESPEHD 989 (1004)
Q Consensus 957 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 989 (1004)
+++++++.+ ..++|..++++|...+-.|+..
T Consensus 886 ~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 886 STLVDGFGE--YDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence 777777632 1357788888877777666554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=567.35 Aligned_cols=515 Identities=19% Similarity=0.269 Sum_probs=467.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 048751 166 VPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNG-VLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNT 244 (1004)
Q Consensus 166 ~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 244 (1004)
..+...|+.+|.+|.+.|++++|..+|+.|...+ +.|+..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4456789999999999999999999999999864 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCC
Q 048751 245 VVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPR 324 (1004)
Q Consensus 245 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 324 (1004)
++++|++.|+++.|.++|++|.+ +
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~--------------------------------------------------------~ 187 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE--------------------------------------------------------R 187 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC--------------------------------------------------------C
Confidence 99999999999999999987521 2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 325 LTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLS 404 (1004)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 404 (1004)
+..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.++++.|+.+.+.+++..+.+.|+.||..+||+||.
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~ 267 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHH
Q 048751 405 LYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQ 484 (1004)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 484 (1004)
+|++.|++++|.++|++|.+ +|.++|+++|.+|++.|++++|.++|++|.+.|
T Consensus 268 ~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g----------------------- 320 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG----------------------- 320 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------------------
Confidence 99999999999999999964 799999999999999999999999999998876
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048751 485 AKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564 (1004)
Q Consensus 485 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 564 (1004)
..||..+|+.++.+|++.|++++|.+++.+|.+
T Consensus 321 -----------------------------------------------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 321 -----------------------------------------------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred -----------------------------------------------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 556677899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 048751 565 LGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY 644 (1004)
Q Consensus 565 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 644 (1004)
.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|+++|++|.+.|+.||..||
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999964 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRE-CGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE 723 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (1004)
+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|++|+.+|..
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999975 699999999999999999999999999998765 678999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH---HHH--------
Q 048751 724 LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMA---CFA-------- 791 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~---~~~-------- 791 (1004)
.|+++.|..+++++.+..|.+..+|..|+++|++.|++++|.+++++|.+.|+.+. ..+|..+.. .+.
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~ 586 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQ 586 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCcc
Confidence 99999999999999988888899999999999999999999999999999997643 333322110 000
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChhh
Q 048751 792 TNGQLRQCGELLHEMLTQKLLPDNGT 817 (1004)
Q Consensus 792 ~~g~~~~A~~~~~~~~~~~~~p~~~~ 817 (1004)
...-++...++..+|.+.|..|+...
T Consensus 587 ~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 587 SREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 01113445567778888899998543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=549.93 Aligned_cols=465 Identities=18% Similarity=0.280 Sum_probs=424.3
Q ss_pred HHHHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 048751 141 VVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLI 220 (1004)
Q Consensus 141 ~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 220 (1004)
..+...++++.|+++|+|+....++.|+..+|+.++.+|++.++++.+..++..|.+.|+.||..+|+.|+.+|++.|++
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 34556788999999999999877789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHh
Q 048751 221 KEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFR 300 (1004)
Q Consensus 221 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1004)
++|.++|++|. .||.++|++++.+|++.|++++|.++|++|.+.++
T Consensus 175 ~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~------------------------------ 220 (697)
T PLN03081 175 IDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS------------------------------ 220 (697)
T ss_pred HHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC------------------------------
Confidence 99999999996 48999999999999999999999999999753321
Q ss_pred cCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHH
Q 048751 301 TGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEA 380 (1004)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 380 (1004)
.++..+|+.++.++++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++|
T Consensus 221 ----------------------~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 221 ----------------------DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred ----------------------CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 2347899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048751 381 EALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKC 460 (1004)
Q Consensus 381 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (1004)
.++|++|. .+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.
T Consensus 279 ~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 279 RCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99999996 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHH
Q 048751 461 GLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYN 540 (1004)
Q Consensus 461 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 540 (1004)
|+.+|..+++.++.+|++.|++++|.++|+++ ..+|+.+||
T Consensus 355 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m---------------------------------------~~~d~~t~n 395 (697)
T PLN03081 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRM---------------------------------------PRKNLISWN 395 (697)
T ss_pred CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC---------------------------------------CCCCeeeHH
Confidence 99998888877777776666666666666554 557889999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHc
Q 048751 541 VMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQG-AGFKPQCLTFSSVIAAYARL 619 (1004)
Q Consensus 541 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~ 619 (1004)
+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999976 58999999999999999999
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 620 GQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVY 699 (1004)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 699 (1004)
|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.++ .+..+|..|++.|++.|++++|.+++
T Consensus 476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998876 4689999999999999999999999999998876542 24678999999999999999999999
Q ss_pred HHHHhCCCC
Q 048751 700 EKMKEMEGG 708 (1004)
Q Consensus 700 ~~~~~~~~~ 708 (1004)
+.|.+.|+.
T Consensus 552 ~~m~~~g~~ 560 (697)
T PLN03081 552 ETLKRKGLS 560 (697)
T ss_pred HHHHHcCCc
Confidence 999988875
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=454.84 Aligned_cols=795 Identities=12% Similarity=0.032 Sum_probs=608.1
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 048751 143 LKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKE 222 (1004)
Q Consensus 143 l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 222 (1004)
+...|+++.|+..|..... .........+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 100 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~ 177 (899)
T TIGR02917 100 YLLQGKFQQVLDELPGKTL-LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDE 177 (899)
T ss_pred HHHCCCHHHHHHhhccccc-CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHH
Confidence 3344555555555543221 1112233444555555555555555555555555433 2233445555555555555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhh--HHHhHHHHh
Q 048751 223 ALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFK--HFLSTELFR 300 (1004)
Q Consensus 223 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 300 (1004)
|..+++++.+.. .++...+..+...+...|++++|...|++..... |.... ..+...++.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-----------------p~~~~~~~~~~~~~~~ 239 (899)
T TIGR02917 178 ARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-----------------PNNPAVLLALATILIE 239 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----------------CCCHHHHHHHHHHHHH
Confidence 555555554431 2233445555555555555555555555432211 00000 000111111
Q ss_pred cCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHH
Q 048751 301 TGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEA 380 (1004)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 380 (1004)
.|........+. .. ....|.+...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|
T Consensus 240 ~g~~~~A~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A 314 (899)
T TIGR02917 240 AGEFEEAEKHAD--AL--LKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQA 314 (899)
T ss_pred cCCHHHHHHHHH--HH--HHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHH
Confidence 111000000000 00 0012333445555566677889999999999999876422 233444556677889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048751 381 EALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKC 460 (1004)
Q Consensus 381 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 460 (1004)
...|+.+.+.. +.+...+..+...+.+.|++++|...++++.+.. ..+...+..+...+.+.|++++|.+.|+++.+.
T Consensus 315 ~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 392 (899)
T TIGR02917 315 YQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATEL 392 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999998764 3356778888899999999999999999998764 245778888999999999999999999999876
Q ss_pred CCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHH
Q 048751 461 GLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYN 540 (1004)
Q Consensus 461 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 540 (1004)
... +...+..+...+...|++++|...++.+....+........++..+.+.|++++|..++..+... .+.+...|+
T Consensus 393 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 469 (899)
T TIGR02917 393 DPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK--QPDNASLHN 469 (899)
T ss_pred CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCcHHHH
Confidence 432 45567788888999999999999999998888888888888999999999999999999988764 566778899
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 541 VMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLG 620 (1004)
Q Consensus 541 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 620 (1004)
.+...+...|++++|...|+++.+... .+...+..+...+...|++++|.++++.+.+.. +.+..++..+...+.+.|
T Consensus 470 ~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTG 547 (899)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcC
Confidence 999999999999999999999988653 356677888899999999999999999998764 557788899999999999
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 621 QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYE 700 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 700 (1004)
+.++|..+++++...+ +.+...+..++..|...|++++|.++++.+.+.. +.+...|..+...+...|++++|...++
T Consensus 548 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 548 NEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred CHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998764 4567788889999999999999999999998764 3677889999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048751 701 KMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV 780 (1004)
Q Consensus 701 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 780 (1004)
.+.+... .+...+..++.++.+.|++++|...|+++.+..|.+..++..++..+...|++++|..+++.+.+.+. .+.
T Consensus 626 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 703 (899)
T TIGR02917 626 KLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAA 703 (899)
T ss_pred HHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCh
Confidence 9987654 36778889999999999999999999999999999999999999999999999999999999998763 567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHHH
Q 048751 781 ISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYS 859 (1004)
Q Consensus 781 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~ 859 (1004)
..+..+...+...|++++|...++++... .|+..++..+..++.+.|+.++|.+.+++.++..+.... ...++.++.
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 78888999999999999999999999865 455577788889999999999999999999988877654 455567788
Q ss_pred HHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHH
Q 048751 860 VVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVK 938 (1004)
Q Consensus 860 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~ 938 (1004)
..|+.++|++.++++++.. |.++.+++.++..+...|+ ++|+.+++++.+ ..| ++.++..+..++...|++++|.
T Consensus 782 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~ 857 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRAL 857 (899)
T ss_pred HCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999987 4588999999999999999 889999999987 456 5677888999999999999999
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 939 RIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMR 980 (1004)
Q Consensus 939 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 980 (1004)
++++++...+- .++.++..++.+|.+.|+.++|.+++++|.
T Consensus 858 ~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 858 PLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999975432 268899999999999999999999999885
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=442.19 Aligned_cols=803 Identities=13% Similarity=0.057 Sum_probs=662.8
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 048751 139 QTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAG 218 (1004)
Q Consensus 139 ~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 218 (1004)
...++...|+++.|...|+.+.... +++......+..++.+.|++++|...+.+......+.....+..+..+|...|
T Consensus 62 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (899)
T TIGR02917 62 LGKIYLALGDYAAAEKELRKALSLG--YPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLG 139 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcC
Confidence 3456667899999999999988643 34556677789999999999999999987754444556677899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhH--HHhH
Q 048751 219 LIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKH--FLST 296 (1004)
Q Consensus 219 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 296 (1004)
++++|...|+++.+... .+..++..+...+...|++++|..+++++.... |..... .+..
T Consensus 140 ~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~~~~ 201 (899)
T TIGR02917 140 QLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTAD-----------------PGNVDALLLKGD 201 (899)
T ss_pred CHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCChHHHHHHHH
Confidence 99999999999987642 345578889999999999999999999874422 111111 1111
Q ss_pred HHHhcCCCCccccchh-hcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccC
Q 048751 297 ELFRTGGRNPISRNMG-LLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHG 375 (1004)
Q Consensus 297 ~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 375 (1004)
-.+..|.. ..+.. +... ....|.+..++..++..+...|++++|...++.+.+.... +...+......+...|
T Consensus 202 ~~~~~g~~---~~A~~~~~~a--~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 275 (899)
T TIGR02917 202 LLLSLGNI---ELALAAYRKA--IALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKK 275 (899)
T ss_pred HHHhcCCH---HHHHHHHHHH--HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhc
Confidence 11222211 11111 1111 1234777888999999999999999999999999886432 3333334445566789
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 376 NLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVII 455 (1004)
Q Consensus 376 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 455 (1004)
++++|...|+.+.+.+.. +...+..+...+...|++++|...|+++.+.. ..+...+..+...+.+.|++++|...++
T Consensus 276 ~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (899)
T TIGR02917 276 NYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLS 353 (899)
T ss_pred CHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999876422 23455566777889999999999999998753 2346677888889999999999999999
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCC
Q 048751 456 EMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKS 535 (1004)
Q Consensus 456 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 535 (1004)
++..... .+...+..+...+...|++++|.+.|+++....+.....+..++..+...|++++|...|..+.+. .+..
T Consensus 354 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 430 (899)
T TIGR02917 354 PALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL--DPEL 430 (899)
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh--CCcc
Confidence 9987653 356678888999999999999999999999888889999999999999999999999999998774 3334
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 536 VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAA 615 (1004)
Q Consensus 536 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 615 (1004)
...+..++..+.+.|++++|..+++++..... ++..++..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 431 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 508 (899)
T TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARI 508 (899)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHH
Confidence 45667788899999999999999999987643 467889999999999999999999999998754 4566778889999
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 616 YARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGA 695 (1004)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 695 (1004)
+...|++++|.+.|+++...+ +.+..++..+...+.+.|+.++|..+++++...+. .+...+..++..+...|++++|
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998764 55788999999999999999999999999988753 5667888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 696 KQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
..+++.+.+.. +.+...|..++.++.+.|++++|...|+++.+..|.++..+..++.++...|++++|+..++++.+..
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999998754 44788999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHH
Q 048751 776 LLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIIT 855 (1004)
Q Consensus 776 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 855 (1004)
. .+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++.++...+.......++
T Consensus 666 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 743 (899)
T TIGR02917 666 P-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH 743 (899)
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHH
Confidence 2 347899999999999999999999999998764 45666778888899999999999999999999887765555667
Q ss_pred HHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 048751 856 SVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLV 934 (1004)
Q Consensus 856 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~ 934 (1004)
..+...|+.++|.+.++++++.. |.+..+++.++..|...|++++|.+.|+++++. .| +..++..+.+.+...|+
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-
Confidence 78899999999999999999986 558899999999999999999999999999984 45 68899999999999999
Q ss_pred hHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCC
Q 048751 935 EGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRNANREDLADLACQEMRTAFES 985 (1004)
Q Consensus 935 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 985 (1004)
++|..+++++.. ..|+ +..+..++.+|...|++++|...++++....+.
T Consensus 820 ~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 820 PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 889999998864 3555 667889999999999999999999999976644
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-27 Score=299.50 Aligned_cols=674 Identities=12% Similarity=0.057 Sum_probs=346.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048751 172 YNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKE 251 (1004)
Q Consensus 172 ~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 251 (1004)
.-..++.+...++.+.|.+.+.++.... +.++.++..++..+.+.|+.++|.+.++++.+. .|+...+..+-..+..
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHh
Confidence 3445666677788888888888877654 446677777888888888888888888888776 3443332111100000
Q ss_pred cCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHH
Q 048751 252 VGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNT 331 (1004)
Q Consensus 252 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 331 (1004)
.+++......
T Consensus 108 ----------------------------------------------------------------------~~~~~~~~l~ 117 (1157)
T PRK11447 108 ----------------------------------------------------------------------STPEGRQALQ 117 (1157)
T ss_pred ----------------------------------------------------------------------cCCchhhHHH
Confidence 0011122333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048751 332 LIDLYGKAGRLQDAANVFAEMLKSGVAVDTI-TFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVG 410 (1004)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 410 (1004)
+...+.+.|++++|++.|+.+.+.+. |+.. ............|+.++|++.|+++.+.. +-+...+..+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 44455555666666666665554321 1211 11111111123455666666666655542 113444555555555556
Q ss_pred CHHHHHHHHHHHHHcC------------------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHH
Q 048751 411 NINAALRYYWKIREVG------------------LFPDS-VTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPG 471 (1004)
Q Consensus 411 ~~~~A~~~~~~m~~~g------------------~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 471 (1004)
+.++|+..++++.... ..++. ..+...+..+-.....+.|...+.++......|... ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~ 274 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARA 274 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHH
Confidence 6666666665554421 00100 011111111111112223333333332221111110 012
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCC
Q 048751 472 VMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKL 551 (1004)
Q Consensus 472 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 551 (1004)
....+...|++++|...|++++...|.+..++..++.+|.+.|++++|+..|++..+.....+....|..++..
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~------ 348 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV------ 348 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh------
Confidence 23334444555555555555444444444444444444444444444444444443321111111111111100
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 048751 552 YDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHE 631 (1004)
Q Consensus 552 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 631 (1004)
............+.+.|++++|...|+++++.. +.+...+..+...+...|++++|++.|++
T Consensus 349 -----------------~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 349 -----------------NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred -----------------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 000001112334455666666666666666542 33444555566666666666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 632 MRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLW--------ANQIVLTSLIKAYSKIGCLEGAKQVYEKMK 703 (1004)
Q Consensus 632 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 703 (1004)
+.+.. +.+...+..+...|. .++.++|+.+++.+...... .....+..+...+...|++++|++.+++..
T Consensus 411 aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al 488 (1157)
T PRK11447 411 ALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL 488 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66542 223444555555543 34556666655543221000 001122233344444455555555555544
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048751 704 EMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISY 783 (1004)
Q Consensus 704 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 783 (1004)
+..+. +...+..+...|.+.|++++|...++++.+..|.++..+..++..+...|+.++|+..++++......++...+
T Consensus 489 ~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l 567 (1157)
T PRK11447 489 ALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQEL 567 (1157)
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHH
Confidence 43322 33344444444555555555555555554444444444444444444445555555444443221111110000
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCch-hhhHHHHHHHHHh
Q 048751 784 NQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYA-SEAIITSVYSVVG 862 (1004)
Q Consensus 784 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~~~~l~~~~~ 862 (1004)
.. ++ ....+......+...|+.++|++.++. .|..+ ....++.++...|
T Consensus 568 ~~-------------------~l-------~~~~~l~~a~~l~~~G~~~eA~~~l~~----~p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 568 AQ-------------------RL-------QSDQVLETANRLRDSGKEAEAEALLRQ----QPPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred HH-------------------HH-------hhhHHHHHHHHHHHCCCHHHHHHHHHh----CCCCchHHHHHHHHHHHcC
Confidence 00 00 001122344556677777777777662 22222 2445566778888
Q ss_pred hhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 048751 863 LNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIH 941 (1004)
Q Consensus 863 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~ 941 (1004)
++++|++.|+++++.. |.+..++..++.+|...|++++|++.++++.+ ..| +..++..+..++...|++++|.+++
T Consensus 618 ~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 618 DYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8888888888888876 45788999999999999999999999998876 456 4567777888888999999999999
Q ss_pred HHHHcCC-CCC----cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048751 942 SQLKYGK-MEP----NENLFKAVIDAYRNANREDLADLACQEMRT 981 (1004)
Q Consensus 942 ~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 981 (1004)
+.+.... -.| ++.++..++.++...|++++|...+++...
T Consensus 695 ~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 695 NRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9886432 112 234677788999999999999999988763
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-27 Score=298.47 Aligned_cols=628 Identities=13% Similarity=0.069 Sum_probs=456.7
Q ss_pred hhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH----------------H
Q 048751 145 EQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTY----------------G 208 (1004)
Q Consensus 145 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~----------------~ 208 (1004)
..++.+.|.+.++.+.... +-++.++..++..+.+.|+.++|...+++..+.. |.+.... .
T Consensus 40 ~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l 116 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQAL 116 (1157)
T ss_pred hhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHH
Confidence 4677888888888777432 3367788889999999999999999999998866 3333322 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCc
Q 048751 209 MLVDVYGKAGLIKEALLWIKHMKLRGIFPDEV-TMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMP 287 (1004)
Q Consensus 209 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1004)
.+.+.+.+.|++++|+..|+++.+.+ .|+.. ....+.......|+.++|.+.|+++.+
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~-------------------- 175 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA-------------------- 175 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH--------------------
Confidence 34557889999999999999998763 22322 111112222345899999999987532
Q ss_pred chhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC--H----
Q 048751 288 VSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVD--T---- 361 (1004)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~---- 361 (1004)
..|.+...+..+...+...|+.++|+..|+++.+...... .
T Consensus 176 ---------------------------------~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~ 222 (1157)
T PRK11447 176 ---------------------------------DYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWY 222 (1157)
T ss_pred ---------------------------------hCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 1366778899999999999999999999999876421100 0
Q ss_pred -------------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048751 362 -------------ITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLF 428 (1004)
Q Consensus 362 -------------~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 428 (1004)
..+...+..+-.......|...+..+......|+... ......+...|++++|+..|++..+...
T Consensus 223 ~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P- 300 (1157)
T PRK11447 223 GQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP- 300 (1157)
T ss_pred HHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 0111112222222334556666666554433344322 2345677889999999999999998532
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-Cc------------HHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 048751 429 PDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDE-HS------------VPGVMKMYINEGLLHQAKIIFKKCQLD 495 (1004)
Q Consensus 429 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 495 (1004)
.+...+..+...+.+.|++++|+..|++..+....... .. .......+.+.|++++|...|++++..
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 25778889999999999999999999999876543221 11 122345678899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC-------
Q 048751 496 GGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTW------- 568 (1004)
Q Consensus 496 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~------- 568 (1004)
.|.+..++..++.++...|++++|++.|+++.+. .+.+...+..+...|. .++.++|..+++.+......
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998874 4455666777777774 46789999888765432100
Q ss_pred -CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048751 569 -PDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSL 647 (1004)
Q Consensus 569 -p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 647 (1004)
.....+..+...+...|++++|.+.|++.++.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~ 535 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAY 535 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 012234556677888999999999999998764 4456677888889999999999999999988653 3345555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048751 648 INGFAATGKVEEALQYFRMMRECGLWANQI---------VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMI 718 (1004)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (1004)
...+...++.++|+..++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+.
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La 610 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHH
Confidence 666778899999999988765432222211 223456677888999999988872 234556677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 048751 719 SLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLR 797 (1004)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 797 (1004)
..+.+.|++++|+..|+++.+..|.++.++..++.+|...|++++|++.++.+.+.. |+ ..++..+..++...|+++
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHhCCCHH
Confidence 889999999999999999999989999999999999999999999999999887643 44 566777888888999999
Q ss_pred HHHHHHHHHHHCCC--CC---ChhhHHHHHHHHHcCCCcHHHHHHHHhHhh
Q 048751 798 QCGELLHEMLTQKL--LP---DNGTFKVLFTILKKGGFPIEAVKQLQSSYQ 843 (1004)
Q Consensus 798 ~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 843 (1004)
+|.+++++++.... .| +...+..+...+...|++++|+..+++++.
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999876422 12 123455567777888888888888887764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-24 Score=252.03 Aligned_cols=679 Identities=10% Similarity=-0.014 Sum_probs=393.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHH
Q 048751 183 QKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFY 262 (1004)
Q Consensus 183 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 262 (1004)
|++++|...|+...+.. |-+..++..|...|...|++++|+..+++..+. .|+...|..++..+ +++++|..+|
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHH
Confidence 67777777777776655 334556677777777777777777777777665 44444444333222 6777777777
Q ss_pred HHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHH-------
Q 048751 263 KDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDL------- 335 (1004)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~------- 335 (1004)
+++.. ..|.+..++..+...
T Consensus 132 e~l~~-----------------------------------------------------~~P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 132 EELLA-----------------------------------------------------QQKACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHHHH-----------------------------------------------------hCCCChhHHHHHHHHhhccchh
Confidence 66521 124445555555554
Q ss_pred -HHhcCChHHHHHHHHHHHHCCCCcCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCH
Q 048751 336 -YGKAGRLQDAANVFAEMLKSGVAVDTITFNTM-IYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYAD-VGNI 412 (1004)
Q Consensus 336 -~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~ 412 (1004)
|.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++++.++.+.+.. +..-...|..+|.. .++
T Consensus 159 ~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~- 232 (987)
T PRK09782 159 RLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD- 232 (987)
T ss_pred hhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-
Confidence 5444 44444444 3333334444444444 67777788888888888888776533 34445566666666 355
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHhcCCHH-HHHHHHH
Q 048751 413 NAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLH-IDEHSVPGVMKMYINEGLLH-QAKIIFK 490 (1004)
Q Consensus 413 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~-~A~~~~~ 490 (1004)
+++..+++. .++-+...+..+...+.+.|+.++|.++++++...-.. |+..++. ..+.+.+... .|..-|.
T Consensus 233 ~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~---~~l~r~~~~~~~~~~~~~ 305 (987)
T PRK09782 233 DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL---YLLSKYSANPVQALANYT 305 (987)
T ss_pred HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH---HHHHhccCchhhhccchh
Confidence 666666543 23356777777788888888888888888776654332 3333322 2233333322 1111111
Q ss_pred HhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 048751 491 KCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPD 570 (1004)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 570 (1004)
+ ...+.-......++..+.+.+.++.++++.. ..|.....-.-..+....+...++...+..|.+.... +
T Consensus 306 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~ 375 (987)
T PRK09782 306 V--QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA-N 375 (987)
T ss_pred h--hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC-C
Confidence 1 1111122344455788888888887776632 2222222111111222346667777777777665321 4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048751 571 ECTYNSLVQMFAGGDLMGQAVDLLAEMQGA--GFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLI 648 (1004)
Q Consensus 571 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 648 (1004)
.....-+.-...+.|+.++|..+|...... +-..+....+.++..|.+.+.+....++..-.. +++...-..+
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~- 450 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK----PLPLAEQRQW- 450 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc----ccccchhHHH-
Confidence 444444444456778888888888887762 122344555677888888777443333322211 1111111111
Q ss_pred HHHHhcCCHH---HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048751 649 NGFAATGKVE---EALQYFRMMRECGLWA--NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE 723 (1004)
Q Consensus 649 ~~~~~~g~~~---~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (1004)
.|+.. .+...+....... ++ +...|..+..++.. ++.++|...+.+..... |+......+...+.+
T Consensus 451 -----~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~ 521 (987)
T PRK09782 451 -----QSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQ 521 (987)
T ss_pred -----HhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHH
Confidence 22222 2333333333321 23 55566666666655 67777777666665543 343333334444557
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 048751 724 LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGEL 802 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 802 (1004)
.|++++|...|+++... +++...+..++.++.+.|++++|...+++.++.+ |+ ...+..+...+...|++++|...
T Consensus 522 ~Gr~eeAi~~~rka~~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 522 VEDYATALAAWQKISLH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77788887777776554 3333445666777777778887887777777654 33 33333344444555788888877
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccC
Q 048751 803 LHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYL 881 (1004)
Q Consensus 803 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~ 881 (1004)
+++.++. .|+...+..+..++.+.|+.++|+..+++++...|.... ...++..+...|++++|++.++++++.. |.
T Consensus 599 ~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~ 675 (987)
T PRK09782 599 LTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PD 675 (987)
T ss_pred HHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 7777643 455666777777777777777777777777777666554 3445556667777777777777777775 34
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHH
Q 048751 882 DSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDI-VTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVI 960 (1004)
Q Consensus 882 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 960 (1004)
++.++..++.++...|++++|+..|++.++ +.|+. .+.....+...+..+++.|.+-+++.- .+.|+..+.-...
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~--~~~~~~~a~~~~g 751 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW--TFSFDSSIGLRSG 751 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh--hcCccchhccccc
Confidence 677788888888888888888888888876 56753 455556666666667777777666554 2344433333333
Q ss_pred HHHHhcC
Q 048751 961 DAYRNAN 967 (1004)
Q Consensus 961 ~~~~~~g 967 (1004)
+++...+
T Consensus 752 ~~~~~~~ 758 (987)
T PRK09782 752 AMSTANN 758 (987)
T ss_pred hHhhhcc
Confidence 4444333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-24 Score=251.18 Aligned_cols=659 Identities=13% Similarity=0.030 Sum_probs=388.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHh
Q 048751 217 AGLIKEALLWIKHMKLRGIFPD-EVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLS 295 (1004)
Q Consensus 217 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1004)
.|++++|+..|++..+. .|+ ..++..|..+|...|+.++|+..+++..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~---------------------------- 106 (987)
T PRK09782 57 NNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK---------------------------- 106 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----------------------------
Confidence 37777777777777666 333 44666666677777777777776665311
Q ss_pred HHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH-----
Q 048751 296 TELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYT----- 370 (1004)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~----- 370 (1004)
..|.|...+..+... +++++|..+++++.+.... +..++..+...
T Consensus 107 -------------------------ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~ 156 (987)
T PRK09782 107 -------------------------RHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQN 156 (987)
T ss_pred -------------------------cCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccc
Confidence 124444444444221 6666777777777665321 23333333333
Q ss_pred ---HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cC
Q 048751 371 ---CGSHGNLSEAEALFCMMEESRISPDTKTYNIL-LSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQ-RN 445 (1004)
Q Consensus 371 ---~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g 445 (1004)
|.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+.++.++.+.+.. +..-...|-.+|.+ .+
T Consensus 157 ~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~ 231 (987)
T PRK09782 157 ALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQL 231 (987)
T ss_pred hhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhC
Confidence 3333 44444444 2222223333333333 66677777777777777777765432 23334445555555 24
Q ss_pred CHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC--CHHHHHHHHHHHHhcCCHH-HHHHH
Q 048751 446 MVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGL--SSKTLAAIIDVYAEKGLWA-EAETV 522 (1004)
Q Consensus 446 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~-~A~~~ 522 (1004)
+ +++..+++. ...-+......++..+.+.|+.++|.++++++....+. ....+..+ +.+.+... .|..-
T Consensus 232 ~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~ 303 (987)
T PRK09782 232 D-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALAN 303 (987)
T ss_pred H-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccc
Confidence 4 555555332 22235555566666666666666666666665433211 11222221 22222211 11111
Q ss_pred HhhhhhhcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 048751 523 FYGKRDLVGQKKS-VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAG 601 (1004)
Q Consensus 523 ~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 601 (1004)
|.. . ..++ ....-.++..+.+.++++.+.++.. +.|.......-..+....+...++...+..|.+..
T Consensus 304 ~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~ 372 (987)
T PRK09782 304 YTV--Q---FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE 372 (987)
T ss_pred hhh--h---hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC
Confidence 110 0 0000 0011222445556666664444311 22222221111111123355555555555555431
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048751 602 FKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA--GVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVL 679 (1004)
Q Consensus 602 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 679 (1004)
+-+....--+.-...+.|+.++|..+|+..... +..++....+.++..|.+.+......++..... +++...-
T Consensus 373 -~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~ 447 (987)
T PRK09782 373 -PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK----PLPLAEQ 447 (987)
T ss_pred -CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc----ccccchh
Confidence 223344434444455666666677666666541 112233344456666666655322222211111 1111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC-C-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 680 TSLIKAYSKIGCLEGAKQVYEKMKEME-G-GP--DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 680 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
+.-.|+..++...++.....- . ++ +...|..+..++.. ++.++|...+.+.....|.+. ....++..+
T Consensus 448 ------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al 519 (987)
T PRK09782 448 ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQA 519 (987)
T ss_pred ------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHH
Confidence 111233333333333322211 1 23 56778888888877 899999999988888776543 345556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHH
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAV 835 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 835 (1004)
...|++++|+..++++... .|+...+..+..++.+.|++++|..++++.++.. +++...+..+...+...|++++|+
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 7999999999999998664 3555567777888899999999999999998653 222333334444555679999999
Q ss_pred HHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 048751 836 KQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLE 915 (1004)
Q Consensus 836 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 915 (1004)
..++++++..|.......++.++...|++++|++.++++++.. |.+..+++.++.++...|+.++|++.|++.++ ..
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~ 673 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK--GL 673 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 9999999888753334556777899999999999999999997 45888999999999999999999999999998 57
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 916 P-DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRNANREDLADLACQEMR 980 (1004)
Q Consensus 916 p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 980 (1004)
| +...+..+..++...|++++|...++++. .+.|+ +.+....+.++.+..+++.|.+.+++.-
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al--~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVI--DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 8 57789999999999999999999999887 45787 5678888899999999999988666544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-23 Score=218.31 Aligned_cols=453 Identities=16% Similarity=0.152 Sum_probs=312.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 503 LAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFA 582 (1004)
Q Consensus 503 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 582 (1004)
...|+.-..+.|++.+|++.-..+-.. .+.+....-.+-..+.+..++++...--....+... --..+|..+...+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHH
Confidence 455566666667777776655443321 122222222233345555555555444333333221 13456777777777
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 048751 583 GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY-GSLINGFAATGKVEEAL 661 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~ 661 (1004)
..|++.+|+.+++.+++.. +.....|..+..++...|+.+.|...|.+..+. .|+.... +.+.+.+-..|++.+|.
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 7777777777777777643 334566777777777777777777777777663 4554333 33444444567777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048751 662 QYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG 741 (1004)
Q Consensus 662 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (1004)
..+.+.++... -=.+.|+.|...+-.+|+...|+..|++..+.++. -...|-.|...|...+.+++|...|.+.....
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 77777766432 22356777777777777777787777777765432 23466677777777778888888888777777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 048751 742 QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKV 820 (1004)
Q Consensus 742 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 820 (1004)
|....++..|+..|..+|.+|-|+..+++.++ +.|+ ...|+.|..++-..|++.+|.+.|++.+.. .+........
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHH
Confidence 77777788888888888888888888888777 3466 567778888887778888888888777653 2333456677
Q ss_pred HHHHHHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCCh
Q 048751 821 LFTILKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKN 899 (1004)
Q Consensus 821 l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 899 (1004)
+...+...|..++|..++..+++-.|.... ...++.+|-.+|++++|+..|++++... |.-.-+|+.++..|...|+.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhH
Confidence 777777788888888888887777776655 4566777888888888888888888775 23456788999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhH
Q 048751 900 DKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRNANREDL 971 (1004)
Q Consensus 900 ~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 971 (1004)
+.|++.|.+++. +.|. ...+.+|..++..+|+..+|+.-++... .++|| +..|..++.++---.+|.+
T Consensus 439 ~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999998887 6775 5688889999999999999999888876 56888 5678877777655555554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=219.23 Aligned_cols=451 Identities=16% Similarity=0.167 Sum_probs=328.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 048751 434 QRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEK 513 (1004)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 513 (1004)
...|..-..+.|++++|++--...-... ..+...+..+...+.+..+++...+.-...++..+.-.+++..+++.+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 5566677778889888887655443332 224445555666777777888777777777777788888888888888888
Q ss_pred CCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcCCChHHHHH
Q 048751 514 GLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTY-NSLVQMFAGGDLMGQAVD 592 (1004)
Q Consensus 514 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~ 592 (1004)
|++++|...++.+.+. .+..+..|..+..++...|+.+.|.+.|.+.++. .|+.... ..+...+...|++.+|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 8888888888888774 5556778888888888888888888888888774 3554433 333444445688888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 593 LLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN-EVVYGSLINGFAATGKVEEALQYFRMMRECG 671 (1004)
Q Consensus 593 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 671 (1004)
.|.+.++.. +-=...|+.|...+...|+...|+..|++..+. .|+ ...|-.|.+.|-..+.++.|+..+.+.....
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 887777642 222456778888888888888888888887764 465 6778888888888888888888887777643
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 048751 672 LWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAM 751 (1004)
Q Consensus 672 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 751 (1004)
. -....+..+...|-.+|.++.|+..+++.++..+. =...|+.|..++-..|++.+|...|.+.....|....+.+.|
T Consensus 283 p-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 283 P-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred C-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 2 24556777777777888888888888888775432 345778888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHcCC
Q 048751 752 MYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG-TFKVLFTILKKGG 829 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g 829 (1004)
+.+|...|++++|..+|....+ +.|. ....+.|...|-++|++++|+..|++.++ +.|+.. .+..+..
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGn------ 430 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGN------ 430 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcch------
Confidence 8888888888888888888877 4466 55677788888888888888888887763 455422 2333333
Q ss_pred CcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 048751 830 FPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKM 909 (1004)
Q Consensus 830 ~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 909 (1004)
.|...|+.+.|++.+.+++...+ --..+.+.|+..|..+|+..+|++-|++.
T Consensus 431 ---------------------------t~ke~g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 431 ---------------------------TYKEMGDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred ---------------------------HHHHhhhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 34455566666666666666542 23457899999999999999999999999
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCh
Q 048751 910 LDQGLEPD-IVTCINLVGCYGKAGLV 934 (1004)
Q Consensus 910 ~~~g~~pd-~~t~~~l~~~~~~~g~~ 934 (1004)
++ ++|| +..+.+++.++.-..++
T Consensus 483 Lk--lkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 483 LK--LKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred Hc--cCCCCchhhhHHHHHHHHHhcc
Confidence 97 7897 56788887776544333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-20 Score=204.95 Aligned_cols=648 Identities=13% Similarity=0.074 Sum_probs=456.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CcCHH---HHHHHHHHHHcc-----------CCHHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGV----AVDTI---TFNTMIYTCGSH-----------GNLSEAEALFCMM 387 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~---t~~~ll~~~~~~-----------g~~~~A~~l~~~m 387 (1004)
..+|..+...|++.|..++.+.+++.-....- .++.. .++.+...+... .-+..|.-+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 46799999999999999999999987662110 11111 112222212111 1123344444443
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048751 388 EESRISPDTKTYNILLSLYADVGN--INAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHID 465 (1004)
Q Consensus 388 ~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 465 (1004)
-+....-+. ++..-...|...|+ ++.|...|....+.. .+++...---.......|++..|+.+|..........-
T Consensus 121 ~ki~m~~~~-~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 121 DKIDMYEDS-HLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HHhhccCcc-hhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 322111111 11111122333444 589999999998853 23333333333344567899999999999776654444
Q ss_pred CCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC---HHHHHHHHhhhhhhcCCCCCHHHHHHH
Q 048751 466 EHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGL---WAEAETVFYGKRDLVGQKKSVVEYNVM 542 (1004)
Q Consensus 466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l 542 (1004)
+.....+..++.+.|+.+.|+..|.+++.-+|.++.++..|+.+-....+ +..+...+...-.. .+.+++..+.|
T Consensus 199 aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~L 276 (1018)
T KOG2002|consen 199 ADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHL 276 (1018)
T ss_pred CCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHH
Confidence 44555667888899999999999999999999888888888777666554 45566666666554 55566778889
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHH
Q 048751 543 IKAYGKSKLYDKAFSLFKVMKNLGTW--PDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQC--LTFSSVIAAYAR 618 (1004)
Q Consensus 543 i~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~ 618 (1004)
...|.-.|++..+..+...+...... .-...|..+.++|...|++++|..+|.+..+.. ++. ..+..+...|.+
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHH
Confidence 99999999999999999988775421 123457789999999999999999998887643 443 445678899999
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048751 619 LGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG----KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEG 694 (1004)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 694 (1004)
.|+++.+...|+...+.. +-+..+...|...|...+ ..+.|..++....+.- +.|...|..+...+-.. +...
T Consensus 355 ~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~ 431 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWA 431 (1018)
T ss_pred hchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHH
Confidence 999999999999998863 445778888888887765 5677888887777654 35677787777776554 4444
Q ss_pred HHHHHHHH----HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C------CCHHHHHHHHHHHHhcCC
Q 048751 695 AKQVYEKM----KEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG----Q------VDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 695 A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~------~~~~~~~~l~~~~~~~g~ 760 (1004)
++..+..+ ...+..+.+...|.+.......|++.+|...|......- . .+..+-..++.++-..++
T Consensus 432 sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 432 SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHD 511 (1018)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhh
Confidence 46666544 345556888999999999999999999999999987761 1 233346678888889999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHH
Q 048751 761 LDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQ 839 (1004)
Q Consensus 761 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~ 839 (1004)
++.|.+.|..+.+.. |. +..|..++......+...+|...++..+.. ...++.....+...+.+...+..|.+-+.
T Consensus 512 ~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 512 TEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred hhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence 999999999999854 66 445555553334457888999999998653 23344445555556666666666766555
Q ss_pred hHhhccCCc---hhhhHHHHHH------------HHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHH
Q 048751 840 SSYQEVKPY---ASEAIITSVY------------SVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALN 904 (1004)
Q Consensus 840 ~~~~~~~~~---~~~~~~~~l~------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 904 (1004)
......... -+...++.++ ...+.+++|++.|.+++..+ |.|..+-|.++-.++..|++.+|.+
T Consensus 589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHH
Confidence 555543222 1111222221 13445567999999999987 5599999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 048751 905 TFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQL-KYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTAF 983 (1004)
Q Consensus 905 ~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 983 (1004)
+|.+..+... -+..+|.++.++|...|++..|+++++.. .+..-.-+..+...|+.++.++|.+.+|.+.+.+.....
T Consensus 668 IFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 668 IFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999998533 35678999999999999999999999875 444444457899999999999999999988877766555
Q ss_pred CCCC
Q 048751 984 ESPE 987 (1004)
Q Consensus 984 ~~~~ 987 (1004)
++.+
T Consensus 747 p~~~ 750 (1018)
T KOG2002|consen 747 PSNT 750 (1018)
T ss_pred Cccc
Confidence 4443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-19 Score=197.98 Aligned_cols=600 Identities=11% Similarity=0.052 Sum_probs=346.3
Q ss_pred hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 342 LQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESR--ISPDTKTYNILLSLYADVGNINAALRYY 419 (1004)
Q Consensus 342 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~ 419 (1004)
++.|...|....+.. ++|+-.+---.......|++..|+.+|...+... +.||+. -.+..++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 488888888888763 2343333222233446778899999998876543 345543 23345667888888988888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 048751 420 WKIREVGLFPDSVTQRAILHILC-QRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGL 498 (1004)
Q Consensus 420 ~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 498 (1004)
.+..+. .|+.+.-...+..+- ...+ ...+..+..++...-..++.
T Consensus 223 ~ralqL--dp~~v~alv~L~~~~l~~~d--------------------------------~~s~~~~~~ll~~ay~~n~~ 268 (1018)
T KOG2002|consen 223 ERALQL--DPTCVSALVALGEVDLNFND--------------------------------SDSYKKGVQLLQRAYKENNE 268 (1018)
T ss_pred HHHHhc--ChhhHHHHHHHHHHHHHccc--------------------------------hHHHHHHHHHHHHHHhhcCC
Confidence 888873 443222111111111 1111 12233444444444445555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 499 SSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQ-KKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSL 577 (1004)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 577 (1004)
+|.+.+.|++.|...|++..++.+...+....-. ..-..+|.-+.++|-..|++++|...|.+..+....--...+.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 5555566666666666666555555544331100 011223555566666666666666666555543221112233445
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048751 578 VQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLG----QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAA 653 (1004)
Q Consensus 578 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 653 (1004)
.+.+.+.|+++.+...|+...+.. +.+..+...|...|...+ ..+.|..++.+..+.. +.|...|-.+...+..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 556666666666666666665542 334445555555555443 3455555555555432 3445566555555554
Q ss_pred cCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHH
Q 048751 654 TGKVEEALQYFRMMR----ECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM---EGGPDT------VASNTMISL 720 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~ 720 (1004)
..-+. ++.+|..+. ..+-.+.+...|.+.......|++..|...|...... ...++. .+-..+..+
T Consensus 427 ~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 33332 244444332 3333355566666666666667777776666665543 111222 222335555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCG 800 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 800 (1004)
+-..++.+.|.+.|..+.+..|.-+..|..++.+....+...+|...+......+ ..++..+.-+...+.+...+..|.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccc
Confidence 6666677777777777777777777777777666666667777777777766532 244555555666666666666666
Q ss_pred HHHHHHHHCC-CCCChhhHHHHHHHHHc------------CCCcHHHHHHHHhHhhccCCchh-hhHHHHHHHHHhhhHh
Q 048751 801 ELLHEMLTQK-LLPDNGTFKVLFTILKK------------GGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYSVVGLNAL 866 (1004)
Q Consensus 801 ~~~~~~~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 866 (1004)
+-|....+.- ..+|......|...+.. .+..++|+..+.++++..|.... ..-++.+++..|++++
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH
Confidence 6555554331 22444444444443321 12345666677777766654433 4455677888888888
Q ss_pred hhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 867 ALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ-GLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 867 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
|..+|.++.+... ....+|-.++++|...|++-.|+++|+...+. +..-++.....|..++.+.|.+.+|.+.+....
T Consensus 665 A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 665 ARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8888888877753 35667888888888888888888888887764 333467788888888888888888888876654
Q ss_pred cCCCCCc--HHHHHHHH------------------HHHHhcCChhHHHHHHHHHHhhcCC
Q 048751 946 YGKMEPN--ENLFKAVI------------------DAYRNANREDLADLACQEMRTAFES 985 (1004)
Q Consensus 946 ~~~~~p~--~~~~~~l~------------------~~~~~~g~~~~A~~~~~~m~~~~~~ 985 (1004)
. +.|. ...++..+ .+....+..++|.++|..|....+.
T Consensus 744 ~--~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 744 H--LAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred H--hCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2 2343 22233221 1222334578888999988876665
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-17 Score=196.98 Aligned_cols=433 Identities=12% Similarity=0.038 Sum_probs=223.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 327 STYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLY 406 (1004)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 406 (1004)
..+..+...+.+.|++++|+..|++.++. .|+...|..+..++.+.|++++|++.++..++... .+..+|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 45667788899999999999999998875 57778888899999999999999999999988642 2567888899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHH
Q 048751 407 ADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAK 486 (1004)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 486 (1004)
...|++++|+..|..+...+...+. ....++..+.. ..+.....+..+... .+......+.. +........+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcch
Confidence 9999999999888776654221121 11122221111 122233333332211 12222222222 11111111111
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 048751 487 IIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLG 566 (1004)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 566 (1004)
.-+.......+.....+..+...+.. ....+++++|.+.|++..+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~e---------------------------------~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 278 AGLEDSNELDEETGNGQLQLGLKSPE---------------------------------SKADESYEEAARAFEKALDLG 324 (615)
T ss_pred hhhhcccccccccccchHHHHHHHHH---------------------------------hhhhhhHHHHHHHHHHHHhcC
Confidence 11111111111100111111111000 012344555555555554432
Q ss_pred -CCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 048751 567 -TWP-DECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY 644 (1004)
Q Consensus 567 -~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 644 (1004)
..| ....+..+...+...|++++|...++..++.. +.....|..+...+...|++++|+..|++..+.. +.+...|
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~ 402 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIY 402 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 112 22334444444555555555555555555431 1223344555555555555555555555554432 2234555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
..+...+...|++++|+..|++..+... .+...+..+...+.+.|++++|+..+++..+..+ .+...++.+..++...
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHc
Confidence 5555555555555555555555555432 2344455555555555566666665555554322 2344555555555556
Q ss_pred CCHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCH
Q 048751 725 GMVTEAESMFNDIREKGQVDAV-------SFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQL 796 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 796 (1004)
|++++|++.|++..+..|.+.. .++.....+...|++++|+.++++..+.. |+ ...+..+...+.+.|++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCH
Confidence 6666666666655554432111 11111222333466666666666655533 32 34555566666666666
Q ss_pred HHHHHHHHHHHH
Q 048751 797 RQCGELLHEMLT 808 (1004)
Q Consensus 797 ~~A~~~~~~~~~ 808 (1004)
++|+.+|++..+
T Consensus 559 ~eAi~~~e~A~~ 570 (615)
T TIGR00990 559 DEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-17 Score=197.65 Aligned_cols=433 Identities=11% Similarity=0.023 Sum_probs=297.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048751 362 ITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPD-SVTQRAILHI 440 (1004)
Q Consensus 362 ~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~ 440 (1004)
..+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|+..++..++. .|+ ...|..+..+
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a 203 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 34566778888999999999999998875 577788888889999999999999999998874 354 5677888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048751 441 LCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAE 520 (1004)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 520 (1004)
+...|++++|+..+..+...+...+ .....++..+.. ..+... +.
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~a~~~------------------------------~~ 248 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRN-EQSAQAVERLLK----KFAESK------------------------------AK 248 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHH----HHHHHH------------------------------HH
Confidence 8888888888887766554321111 111111111111 111111 11
Q ss_pred HHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHH---HHcCCChHHHHHHHHH
Q 048751 521 TVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDE-CTYNSLVQM---FAGGDLMGQAVDLLAE 596 (1004)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~ 596 (1004)
..+.. .+.+...+..+.. |......+.+..-+.+..+ ..+.. ..+..+... ....+++++|.+.|+.
T Consensus 249 ~~l~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~ 319 (615)
T TIGR00990 249 EILET------KPENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEK 319 (615)
T ss_pred HHHhc------CCCCCCCHHHHHH-HHHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 11111 1111111111111 1111111111111111111 01110 011111111 1235788999999999
Q ss_pred HHhCC-C-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048751 597 MQGAG-F-KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN-EVVYGSLINGFAATGKVEEALQYFRMMRECGLW 673 (1004)
Q Consensus 597 m~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 673 (1004)
..+.+ . +.....+..+...+...|++++|+..|++.... .|+ ...|..+...+...|++++|+..|+.+.+...
T Consensus 320 al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p- 396 (615)
T TIGR00990 320 ALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS- 396 (615)
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 98764 2 334567788888889999999999999998875 454 66888899999999999999999999988643
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 048751 674 ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMY 753 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 753 (1004)
.+..+|..+...+...|++++|...|++..+..+. +...+..+..++.+.|++++|+..|++..+..|.++..|+.++.
T Consensus 397 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE 475 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 46788889999999999999999999999886543 66778888999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 048751 754 LYKTMGMLDEAIDAAEEMKLSGLLRDVI------SYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKK 827 (1004)
Q Consensus 754 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 827 (1004)
++...|++++|++.|++..+.....+.. .++..+..+...|++++|..++++.+... +.+...+..+...+..
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQ 554 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 9999999999999999998754221111 12222233445699999999999987653 2233467778889999
Q ss_pred CCCcHHHHHHHHhHhhccCC
Q 048751 828 GGFPIEAVKQLQSSYQEVKP 847 (1004)
Q Consensus 828 ~g~~~~A~~~l~~~~~~~~~ 847 (1004)
.|+.++|+..++++.+..+.
T Consensus 555 ~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 555 QGDVDEALKLFERAAELART 574 (615)
T ss_pred ccCHHHHHHHHHHHHHHhcc
Confidence 99999999999988766543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-19 Score=197.81 Aligned_cols=309 Identities=15% Similarity=0.142 Sum_probs=188.4
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCH
Q 048751 581 FAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN---EVVYGSLINGFAATGKV 657 (1004)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~ 657 (1004)
+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555555666666655542 23344555666666666666666666666655321111 23455666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHH
Q 048751 658 EEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDT----VASNTMISLYAELGMVTEAESM 733 (1004)
Q Consensus 658 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 733 (1004)
++|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666666542 234556666666666667777776666666654433221 1344566667777888888888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048751 734 FNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLP 813 (1004)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 813 (1004)
|+++.+..|.+...+..++..+.+.|++++|+++++++.+.+......+++.++.+|...|++++|...++++.+. .|
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 8887777777777777778888888888888888888776542222456677777788888888888888777654 34
Q ss_pred ChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHH
Q 048751 814 DNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAF 893 (1004)
Q Consensus 814 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 893 (1004)
+...+..+...+.+.|+.++|...+++++ +. .|+...++.++..+
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l---------------------------------~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQL---------------------------------RR--HPSLRGFHRLLDYH 325 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHH---------------------------------Hh--CcCHHHHHHHHHHh
Confidence 44444445555555555555544444433 32 22444555555554
Q ss_pred Hh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 048751 894 KS---SGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLV 934 (1004)
Q Consensus 894 ~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~ 934 (1004)
.. .|+.++|+.++++|.+++++|++. +.|.+.|.+
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 43 457788888888888777776655 335555554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-18 Score=195.58 Aligned_cols=304 Identities=13% Similarity=0.101 Sum_probs=222.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 048751 506 IIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPD---ECTYNSLVQMFA 582 (1004)
Q Consensus 506 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~ 582 (1004)
.+..+...|++++|...|.++.+. .+.+..++..+...+...|++++|..+++.+...+..++ ..++..+...+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 344556667777777777777663 334455677777777777888888877777776532221 245667777777
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHH
Q 048751 583 GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN----EVVYGSLINGFAATGKVE 658 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~ 658 (1004)
..|++++|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888877642 45566778888888888888888888888876542222 123556677778888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 659 EALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIR 738 (1004)
Q Consensus 659 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (1004)
+|..+|+++.+... .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888877542 34556777788888888888888888888875443334567788888888899999999998888
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCh
Q 048751 739 EKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT---NGQLRQCGELLHEMLTQKLLPDN 815 (1004)
Q Consensus 739 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~ 815 (1004)
+..|.+ ..+..++..+.+.|++++|+.+++++.+. .|+..+++.++..+.. .|+.++++.++++|.+.++.|++
T Consensus 277 ~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 277 EEYPGA-DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HhCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 876654 44578888888999999999999888875 4888888887777664 45888899999988877777766
Q ss_pred h
Q 048751 816 G 816 (1004)
Q Consensus 816 ~ 816 (1004)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 5
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-17 Score=192.25 Aligned_cols=331 Identities=10% Similarity=-0.008 Sum_probs=183.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcC
Q 048751 435 RAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKG 514 (1004)
Q Consensus 435 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 514 (1004)
..++..+.+.|++++|..+++........ +...+..++.+....|++++|...++++....|.+..++..++..+...|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 33455555666666666666666655333 33445555555556666666666666666666666666666666666666
Q ss_pred CHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 048751 515 LWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLL 594 (1004)
Q Consensus 515 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 594 (1004)
++++|...+.++... .+.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...+
T Consensus 125 ~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 125 QYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHH
Confidence 666666666666553 33445555666666666666666666666555443221 2222222 2345556666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHC
Q 048751 595 AEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEE----ALQYFRMMREC 670 (1004)
Q Consensus 595 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 670 (1004)
+.+.+....++...+..+...+.+.|++++|+..++++.... +.+...+..+...|...|++++ |+..|+...+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 665544222233333344455556666666666666655542 2334555555666666666553 55556655554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 048751 671 GLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAA 750 (1004)
Q Consensus 671 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 750 (1004)
.+ .+...+..+...+...|++++|...+++..+..+. +...+..+..++.+.|++++|+..|+++.+..|.+...+..
T Consensus 280 ~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 280 NS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 32 24445555555566666666666666655554332 33444455555666666666666666665555554444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048751 751 MMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
++.++...|++++|+..|+++.+
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555566666666666666555
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-17 Score=191.54 Aligned_cols=355 Identities=10% Similarity=0.015 Sum_probs=269.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHh
Q 048751 399 YNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYIN 478 (1004)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 478 (1004)
...++..+.+.|++++|..+++........+ ...+..++.+....|++++|...++++...... +...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 3445667778899999999998888864433 344555556667789999999999998876433 45677888888899
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 048751 479 EGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSL 558 (1004)
Q Consensus 479 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 558 (1004)
.|++++|...+++++...|.+..++..++..+...|++++|...+..+... .+.+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998888888889999999999999999999988877653 23333444333 347788999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHHH
Q 048751 559 FKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSN----AVDLFHEMRR 634 (1004)
Q Consensus 559 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 634 (1004)
++.+.+....++...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++ |...|++...
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9988776544455555666777888899999999999988764 4567778888888999999885 7888888887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048751 635 AGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVAS 714 (1004)
Q Consensus 635 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 714 (1004)
.. +.+...+..+...+...|++++|+..+++..+..+ .+...+..+...+.+.|++++|...++.+.+..+. +...+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~ 355 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWN 355 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHH
Confidence 53 34577888888999999999999999998887653 35667777888888999999999999988875433 22334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
..+..++...|+.++|...|+++.+..|.+. ...+++|...+.+..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 4456778889999999999999888876543 23445566655555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-17 Score=193.58 Aligned_cols=418 Identities=11% Similarity=0.052 Sum_probs=196.4
Q ss_pred CcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHH
Q 048751 467 HSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAY 546 (1004)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (1004)
.-+...+......|+.++|++++.++....+.+..++..++..+...|++++|..+|++.... .+.+...+..++..+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l 93 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 334444445555555555555555555444455555555566666666666666666555542 333444455555556
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 048751 547 GKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAV 626 (1004)
Q Consensus 547 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 626 (1004)
...|++++|+..++++.+.... +.. +..+...+...|+.++|...++++.+.. +.+...+..+...+...|..+.|+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 6666666666666666554221 233 5555555556666666666666665542 233344444555555556666666
Q ss_pred HHHHHHHHcCCCCCH------HHHHHHHHHH-----HhcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHH
Q 048751 627 DLFHEMRRAGVEPNE------VVYGSLINGF-----AATGKV---EEALQYFRMMREC-GLWANQI-VL----TSLIKAY 686 (1004)
Q Consensus 627 ~~~~~m~~~g~~p~~------~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~----~~li~~~ 686 (1004)
..++.... .|+. .....++... ...+++ ++|++.++.+.+. ...|+.. .+ ...+.++
T Consensus 171 ~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 171 GAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 65554432 1221 0001111111 111122 4555555555532 1112111 10 0012233
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCH
Q 048751 687 SKIGCLEGAKQVYEKMKEMEGG-PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD----AVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 761 (1004)
...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+++.+..|.+ ...+..+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4445666666666665554321 221 11123455666666666666666655544322 23344455555566666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHcCCCcHHHHHHH
Q 048751 762 DEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDN---GTFKVLFTILKKGGFPIEAVKQL 838 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~l 838 (1004)
++|+.+++++.+... +....+. ...-.|+. ..+..+...+...|+.++|++.+
T Consensus 327 ~eA~~~l~~~~~~~P-~~~~~~~-----------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 327 PGALTVTAHTINNSP-PFLRLYG-----------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred HHHHHHHHHHhhcCC-ceEeecC-----------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666665554321 0000000 00001121 12223333444455555555555
Q ss_pred HhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 839 QSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 839 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
+++....|.... ...++.++...|+.++|++.++++++.. |.+...+..++..+...|++++|..+++++++ ..|+
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd 459 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQ 459 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCC
Confidence 555444333221 1122233334444444455555555544 33455666666666677777777777777766 4565
Q ss_pred HHH
Q 048751 918 IVT 920 (1004)
Q Consensus 918 ~~t 920 (1004)
...
T Consensus 460 ~~~ 462 (765)
T PRK10049 460 DPG 462 (765)
T ss_pred CHH
Confidence 443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-16 Score=189.69 Aligned_cols=398 Identities=12% Similarity=0.068 Sum_probs=202.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Q 048751 365 NTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPD-SVTQRAILHILCQ 443 (1004)
Q Consensus 365 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 443 (1004)
.-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|..+|++..+. .|+ ...+..+...+..
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 334444455666666666666665421 233445666666666666666666666666653 232 4445555566666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 444 RNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVF 523 (1004)
Q Consensus 444 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 523 (1004)
.|++++|+..++++.+.... +.. +..+..++...|+.++|...+++++...|.+..++..++.++...|..++|...+
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 66666666666666655222 333 5566666667777777777777777777777777777777777777777777777
Q ss_pred hhhhhhcCCCCCH------HHHHHHHHHHH-----cCCCh---hHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHc
Q 048751 524 YGKRDLVGQKKSV------VEYNVMIKAYG-----KSKLY---DKAFSLFKVMKNL-GTWPDEC-TY----NSLVQMFAG 583 (1004)
Q Consensus 524 ~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~-t~----~~ll~~~~~ 583 (1004)
+.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...+..+..
T Consensus 174 ~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 174 DDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 65432 1110 01111222221 11223 5566666666543 1122211 11 111223345
Q ss_pred CCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHH
Q 048751 584 GDLMGQAVDLLAEMQGAGFK-PQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEP---NEVVYGSLINGFAATGKVEE 659 (1004)
Q Consensus 584 ~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~ 659 (1004)
.|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++....... ....+..+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 56666677666666655421 221 11223556666666777776666665432100 12334445555666666666
Q ss_pred HHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 660 ALQYFRMMRECGL-----------WAN---QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG 725 (1004)
Q Consensus 660 A~~~~~~m~~~g~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (1004)
|.++++.+..... .|+ ...+..+...+...|+.++|+++++++....+. +...+..++..+...|
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 6666666655321 011 112223333344444444444444444433222 2334444444444444
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 726 MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 726 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
++++|++.++++.+..|.+...+..++..+...|++++|..+++++++
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-14 Score=159.01 Aligned_cols=642 Identities=13% Similarity=0.110 Sum_probs=364.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048751 332 LIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGN 411 (1004)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 411 (1004)
....+...|++++|..++.+.++... -+...|.+|...|-..|+.+++...+-.+...+ +-|...|..+.....+.|+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 33444455888888888888888753 366778888888888888888887776665543 2356788888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCC----cHHHHHHHHHhcCCHHHHHH
Q 048751 412 INAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEH----SVPGVMKMYINEGLLHQAKI 487 (1004)
Q Consensus 412 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~l~~~~~~~g~~~~A~~ 487 (1004)
++.|.-+|.+.++... ++...+-.-...|-+.|+...|.+.+.++.......|.. ....+++.+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888887532 233344445566777888888888888887764422221 22233444555555566666
Q ss_pred HHHHhhh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH-
Q 048751 488 IFKKCQL--DGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN- 564 (1004)
Q Consensus 488 ~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~- 564 (1004)
.++.... ....+...++.++.+|.+...++.|.......... ...+|..-|.+- ..++ .-+.-...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r-~~e~d~~e~~~~-----~~~~-----~~~~~~~~~ 370 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR-ESEKDDSEWDTD-----ERRR-----EEPNALCEV 370 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc-ccCCChhhhhhh-----hhcc-----ccccccccC
Confidence 6655544 22233334445555555555555554444333220 011111111000 0000 00000000
Q ss_pred -CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH
Q 048751 565 -LGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAG--FKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE 641 (1004)
Q Consensus 565 -~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 641 (1004)
.+..++... --+.-++.+.+..+....+.....+.. +.-+...|.-+..+|...|++..|+.+|..+......-+.
T Consensus 371 ~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 371 GKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 011122222 112233344444444445555555544 3334556777777777778888888887777765444456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------CCCCCCHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKE--------MEGGPDTVA 713 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~ 713 (1004)
..|-.+..+|...|.+++|++.|+..+...+ -+...-.+|...+.+.|+.++|.+.+..+.. ....|+...
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 6777777777777788888888777776532 3445566666677777888877777777432 223444445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------CCCHHHHHHHHHHHHhcCCHHHHHHHH--
Q 048751 714 SNTMISLYAELGMVTEAESMFNDIREKG-----------------------QVDAVSFAAMMYLYKTMGMLDEAIDAA-- 768 (1004)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~-- 768 (1004)
.....+.+.+.|+.++-..+-..|.... +-.......++.+-.+.++.....+..
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d 608 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSD 608 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccc
Confidence 5555667777777666555444443321 011111222333333333322221111
Q ss_pred ----HHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChh---hHH-HHHHHHHcCCCcHHHHHH
Q 048751 769 ----EEMKLSGLLRD-V-ISYNQVMACFATNGQLRQCGELLHEMLTQKL-LPDNG---TFK-VLFTILKKGGFPIEAVKQ 837 (1004)
Q Consensus 769 ----~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~---~~~-~l~~~~~~~g~~~~A~~~ 837 (1004)
.-....|+.-+ . ..+.-++.++++.+++.+|+.+...++.... .-+.. .+. ..+.+....+++.+|...
T Consensus 609 ~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 609 GTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSY 688 (895)
T ss_pred hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 11111222122 1 2345677789999999999999999976532 22333 233 334456688999999999
Q ss_pred HHhHhhccCCc--h-hhhHHH---HHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 838 LQSSYQEVKPY--A-SEAIIT---SVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 838 l~~~~~~~~~~--~-~~~~~~---~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
++.++....-. + -...|. ..+...++...-.+.+..+.......++..+...+.-+...+.+.-|+..|.++..
T Consensus 689 lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 689 LRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 99988763211 1 122232 12223333322333344444443333355555566677788999999999988876
Q ss_pred CCCCCC-HHHHHHHHHHHHh--------cCC--hhHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 912 QGLEPD-IVTCINLVGCYGK--------AGL--VEGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRNANREDLADLACQEM 979 (1004)
Q Consensus 912 ~g~~pd-~~t~~~l~~~~~~--------~g~--~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 979 (1004)
..|| +.+-.+|.-++.. .++ .-.+..++++-.+.....+ -.++..++.+|--.|-...|..++++.
T Consensus 769 --~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 769 --QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKV 846 (895)
T ss_pred --hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4676 4333333333321 111 1245555544432211112 467778999999999999999999999
Q ss_pred HhhcCCCCCCch
Q 048751 980 RTAFESPEHDDS 991 (1004)
Q Consensus 980 ~~~~~~~~~~~~ 991 (1004)
...++...++..
T Consensus 847 L~~~p~~~~~~~ 858 (895)
T KOG2076|consen 847 LEVSPKDVTDPK 858 (895)
T ss_pred hCCCcccccccc
Confidence 988765555544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-13 Score=144.49 Aligned_cols=499 Identities=12% Similarity=0.064 Sum_probs=395.5
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 322 KPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNI 401 (1004)
Q Consensus 322 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 401 (1004)
.|++...|-.. ......+.|.-++.+..+. ++.+.. |.-++.+..-|+.|.++++...+. ++-+...|.+
T Consensus 376 iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWit 445 (913)
T KOG0495|consen 376 IPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWIT 445 (913)
T ss_pred CCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHH
Confidence 36767667544 3456677788888888874 232333 334556677899999999999875 5667788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--CCcHHHHHHH
Q 048751 402 LLSLYADVGNINAALRYYWKI----REVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHID--EHSVPGVMKM 475 (1004)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~ 475 (1004)
-...--..|+.+...+++.+- ...|+.-+...|-.=...+-..|.+-.+..++...+.-|++-. ..++..-.+.
T Consensus 446 aa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 446 AAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHH
Confidence 888888889999888887654 4568888888888888888888999999999998888887643 3578888889
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHH
Q 048751 476 YINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKA 555 (1004)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 555 (1004)
|.+.+.++-|..+|..++...+.....|...+..--..|..++-..+|+++... .+.....|-...+.+-..|++..|
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHH
Confidence 999999999999999999999999999999999989999999999999988875 556666787778888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 048751 556 FSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA 635 (1004)
Q Consensus 556 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 635 (1004)
..++.+..+.... +...|..-+.....+..++.|..+|.+.... .|+..+|..-+...--.++.++|++++++..+.
T Consensus 604 r~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 604 RVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999998886543 6677888888888999999999999888764 577778877777777788999999999888875
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048751 636 GVEPN-EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVAS 714 (1004)
Q Consensus 636 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 714 (1004)
-|+ ...|..+...+.+.++++.|.+.|..=.+. ++-....|..|.+.--+.|..-.|..++++..-.++. +...|
T Consensus 681 --fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lw 756 (913)
T KOG0495|consen 681 --FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLW 756 (913)
T ss_pred --CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhH
Confidence 455 567888888888888888888887765543 3344556777777777888999999999988876655 77888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNG 794 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 794 (1004)
-..|.+-.+.|+.++|..+..+..+..|.+...|..-|.+..+.++-..++..+++. +-|+.....+...|....
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999888888888766666555543 367777888888888899
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhcc
Q 048751 795 QLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEV 845 (1004)
Q Consensus 795 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 845 (1004)
++++|.+.|.+.++.+ +-...++..++.-+...|..++-.+++.......
T Consensus 832 k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 9999999999987642 2234567777777778887777666666554433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-14 Score=155.03 Aligned_cols=629 Identities=12% Similarity=0.052 Sum_probs=312.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhH
Q 048751 217 AGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLST 296 (1004)
Q Consensus 217 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1004)
.|++++|.+++.+.++.. +.....|.+|...|-..|+.+++..++--.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llA------------------------------- 199 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLA------------------------------- 199 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHH-------------------------------
Confidence 377777777777766652 234446777777777777776666554221
Q ss_pred HHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 048751 297 ELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGN 376 (1004)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 376 (1004)
.-..|.|...|-.+.....+.|+++.|.-.|.+.++... ++...+---...|-+.|+
T Consensus 200 ----------------------AHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~ 256 (895)
T KOG2076|consen 200 ----------------------AHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGD 256 (895)
T ss_pred ----------------------HhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhCh
Confidence 112355556677777777777777777777777776632 233333334455667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 377 LSEAEALFCMMEESRISPDTKTY----NILLSLYADVGNINAALRYYWKIREVG-LFPDSVTQRAILHILCQRNMVQEAE 451 (1004)
Q Consensus 377 ~~~A~~l~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~ 451 (1004)
...|.+-|.++.....+-|..-. -..+..+...++.+.|++.++.....+ -..+...++.++..+.+...++.|.
T Consensus 257 ~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~ 336 (895)
T KOG2076|consen 257 LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKAL 336 (895)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhh
Confidence 77777777777765322122212 223445556666677777776666521 2234456677777777777777777
Q ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHhcCCHHHHHHHHhhhhhhc
Q 048751 452 AVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKT-LAAIIDVYAEKGLWAEAETVFYGKRDLV 530 (1004)
Q Consensus 452 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 530 (1004)
..+..+.....++|..-+.+-- .++. -...+-....+-+.+..+ ...+.-.-.+.+...+++.-|..... .
T Consensus 337 ~~i~~~~~r~~e~d~~e~~~~~-----~~~~--~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n-~ 408 (895)
T KOG2076|consen 337 MKIVDDRNRESEKDDSEWDTDE-----RRRE--EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN-V 408 (895)
T ss_pred HHHHHHhccccCCChhhhhhhh-----hccc--cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc-C
Confidence 7777666532222221110000 0000 000000000000111111 11111122222223333322222111 0
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 048751 531 GQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFS 610 (1004)
Q Consensus 531 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 610 (1004)
.+..++..|..+..+|...|++.+|+.+|..+......-+...|..+..+|...|.+++|.+.|+..+... +.+..+-.
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri 487 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARI 487 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhh
Confidence 12222333444555555555555555555555544333344445555555555555555555555554431 22233333
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------
Q 048751 611 SVIAAYARLGQLSNAVDLFHEMR--------RAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECG----------- 671 (1004)
Q Consensus 611 ~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----------- 671 (1004)
.|...+-+.|+.++|.+.+..+. ..+..|+..........+.+.|+.++-+.+...|+...
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~ 567 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNK 567 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 44444555555555555555432 11223333333334444555555554443333332210
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHH
Q 048751 672 -----------LWANQIVLTSLIKAYSKIGCLEGAKQVYE------KMKEMEGGPDT--VASNTMISLYAELGMVTEAES 732 (1004)
Q Consensus 672 -----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~ 732 (1004)
...........+.+-.+.++......-.. .....+...+. ..+.-++..+++.+++.+|+.
T Consensus 568 k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~ 647 (895)
T KOG2076|consen 568 KKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALS 647 (895)
T ss_pred HHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11111222223333333333211111111 11111221111 134556778889999999999
Q ss_pred HHHHHHHcC--CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC--CC-HHHHHHHHHHHHHcCCHHHHHHH
Q 048751 733 MFNDIREKG--QVDA----VSFAAMMYLYKTMGMLDEAIDAAEEMKLS-GLL--RD-VISYNQVMACFATNGQLRQCGEL 802 (1004)
Q Consensus 733 ~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~ 802 (1004)
+...+.+.. -.+. ..-..++.+.+..+++..|...++.|... +.. |. ...|+...+.+.+.++-.--.++
T Consensus 648 vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~ 727 (895)
T KOG2076|consen 648 VVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRL 727 (895)
T ss_pred HHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887765 1222 23445666777888999999998888865 111 22 34566555666665554333333
Q ss_pred HHHHHHCCCCCChhh--HHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHH---HHHhhhH-------hhhh
Q 048751 803 LHEMLTQKLLPDNGT--FKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVY---SVVGLNA-------LALG 869 (1004)
Q Consensus 803 ~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~---~~~~~~~-------~A~~ 869 (1004)
+..+... .|+... .......+..++.+..|+..+-.+....|..|. +.+++..+ +.+++.. .++.
T Consensus 728 ~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~a 805 (895)
T KOG2076|consen 728 IMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFA 805 (895)
T ss_pred HHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333222 222211 122222345677788888888888888877655 34444332 2222221 2444
Q ss_pred HHHHHHhhhcc-CCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 870 TCETLIKAEAY-LDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 870 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
++++..+...+ .-..++..++++|...|-..-|..+|++.++
T Consensus 806 fL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 806 FLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 45444444221 1345666788888888888888888888875
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-15 Score=175.74 Aligned_cols=441 Identities=10% Similarity=0.036 Sum_probs=285.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048751 323 PRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDT--ITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYN 400 (1004)
Q Consensus 323 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 400 (1004)
|..+.+.-.-+-...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++..... ........
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ll 106 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLA 106 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHH
Confidence 4334444444556779999999999999999874 443 234 78888888899999999999998321 12233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcC
Q 048751 401 ILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEG 480 (1004)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 480 (1004)
.+...|...|++++|+++|+++.+.... +...+..++..+.+.++.++|++.++++.+.. |+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcc
Confidence 4466888999999999999999986432 35666777888899999999999999998764 33444444555555567
Q ss_pred CHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHH--HHHHHHHH---------cC
Q 048751 481 LLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEY--NVMIKAYG---------KS 549 (1004)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~li~~~~---------~~ 549 (1004)
+..+|.+.++++....|.+...+..+...+.+.|-...|.++..+-.+. ..+....+ ...+.-.+ ..
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 7767999999999999999999999999999999999999887653321 11111111 00011111 11
Q ss_pred CC---hhHHHHHHHHHHHC-CCCCCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 550 KL---YDKAFSLFKVMKNL-GTWPDEC-----TYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLG 620 (1004)
Q Consensus 550 g~---~~~A~~l~~~m~~~-g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 620 (1004)
.+ .+.|+.-++.+... +..|... +..-.+-++...+++.++++.|+.+...+.+....+-..+.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 12 23444455554432 2223211 222344556677777777777777777665544456667777777777
Q ss_pred CHhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHH
Q 048751 621 QLSNAVDLFHEMRRAG-----VEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGL-----------WANQ---IVLTS 681 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~~~~---~~~~~ 681 (1004)
++++|..+|+++.... .+++......|..+|...+++++|..+++.+.+.-+ .|++ ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 7888877777775532 122344456677777777777777777777765311 0111 12233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
++..+...|++.+|.+.++++....+. |......+.+.+...|.+.+|++.++.+....|.+..+....+..+...|++
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhH
Confidence 444555666666666666666554332 5555566666666666666666666555555566666666666666666666
Q ss_pred HHHHHHHHHHHH
Q 048751 762 DEAIDAAEEMKL 773 (1004)
Q Consensus 762 ~~A~~~~~~~~~ 773 (1004)
++|..+.+.+.+
T Consensus 501 ~~A~~~~~~l~~ 512 (822)
T PRK14574 501 HQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHh
Confidence 666666666655
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-13 Score=142.84 Aligned_cols=589 Identities=12% Similarity=0.027 Sum_probs=420.0
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 048751 322 KPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDT-KTYN 400 (1004)
Q Consensus 322 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~ 400 (1004)
.|.++..|.+-.+.--..|++..|..+..+=-+. ++-+...| +.+ ++....+.|..+.....+. -|+. ..|-
T Consensus 281 nP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvW---Lea-iRLhp~d~aK~vvA~Avr~--~P~Sv~lW~ 353 (913)
T KOG0495|consen 281 NPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVW---LEA-IRLHPPDVAKTVVANAVRF--LPTSVRLWL 353 (913)
T ss_pred CCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHH---HHH-HhcCChHHHHHHHHHHHHh--CCCChhhhh
Confidence 3666778877777777888888888876544433 22233344 332 2556777788888888775 3443 3332
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhc
Q 048751 401 ILLSLYADVGNINAALRYYWKIREVGLFPD-SVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINE 479 (1004)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 479 (1004)
-.+. -..+...=.+++++.++. .|+ +..|... ......++|.-++.+..+.-. +-..+..++.+.
T Consensus 354 kA~d---LE~~~~~K~RVlRKALe~--iP~sv~LWKaA----VelE~~~darilL~rAveccp-----~s~dLwlAlarL 419 (913)
T KOG0495|consen 354 KAAD---LESDTKNKKRVLRKALEH--IPRSVRLWKAA----VELEEPEDARILLERAVECCP-----QSMDLWLALARL 419 (913)
T ss_pred hHHh---hhhHHHHHHHHHHHHHHh--CCchHHHHHHH----HhccChHHHHHHHHHHHHhcc-----chHHHHHHHHHH
Confidence 2222 223444555677777764 344 4455543 345666778888888877532 123456678888
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh---hcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 048751 480 GLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRD---LVGQKKSVVEYNVMIKAYGKSKLYDKAF 556 (1004)
Q Consensus 480 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~ 556 (1004)
.-++.|..++.+..+.-|.++.+|..-+..--..|..+...++..+... ..|...+...|-.=...+-..|-.-.+.
T Consensus 420 etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 8999999999999999999999999999999999999888888776432 2456666777777777777888888888
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 048751 557 SLFKVMKNLGTWPD--ECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRR 634 (1004)
Q Consensus 557 ~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 634 (1004)
.+....+..|+.-. ..||+.-...|.+.+.++-|..+|...++- ++-+...|...+..--..|..+.-..+|++...
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88888877776432 357888888899999999999999988874 355666777777666678889999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048751 635 AGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVAS 714 (1004)
Q Consensus 635 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 714 (1004)
. ++-....|......+-..|++..|..++....+... -+...|...+.......+++.|..+|.+... ..|+..+|
T Consensus 579 ~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~ 654 (913)
T KOG0495|consen 579 Q-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVW 654 (913)
T ss_pred h-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhh
Confidence 6 344566777778888888999999999999988754 3677888888888899999999999998876 45677778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATN 793 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 793 (1004)
.--+....-.++.++|.++++...+..|.-...|..++..+-+.++++.|...|..-.+.. |+ ...|..|...=.+.
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--P~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--PNSIPLWLLLAKLEEKD 732 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--CCCchHHHHHHHHHHHh
Confidence 7777777788999999999999999988888999999999999999999999888877643 65 55777777777888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHH
Q 048751 794 GQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCET 873 (1004)
Q Consensus 794 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~ 873 (1004)
|.+-+|..++++..-++ +-+...|...+..=.+.|..++|...+-+++++.|.. ..+|..-....+...+--.. ..
T Consensus 733 ~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s--g~LWaEaI~le~~~~rkTks-~D 808 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS--GLLWAEAIWLEPRPQRKTKS-ID 808 (913)
T ss_pred cchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc--chhHHHHHHhccCcccchHH-HH
Confidence 89999999999886553 3455567778888888999999998888888887763 23343222222221111111 11
Q ss_pred HHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 874 LIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 874 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
++++. ..|+...-.++..+....++++|.+.|.+.++ ..|| ..+|..+..-..+.|.-++-.+++....
T Consensus 809 ALkkc-e~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 809 ALKKC-EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHhc-cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 11211 23555666666666666677777777777665 3443 4456656666666666666666666554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-16 Score=159.94 Aligned_cols=479 Identities=14% Similarity=0.101 Sum_probs=286.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcH-HHHHHHHHhcCCHHHHHHHHHHhhhcCCC-----CHHHHHH
Q 048751 432 VTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSV-PGVMKMYINEGLLHQAKIIFKKCQLDGGL-----SSKTLAA 505 (1004)
Q Consensus 432 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~ 505 (1004)
.+...|.+-|..+....+|+..++-+++....|+...+ ..+...+.+...+.+|+++++-.+..-|. ...+.+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34445566677777888899999888888888887655 45667788888899999998877654432 2346677
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHH--------HHH
Q 048751 506 IIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTY--------NSL 577 (1004)
Q Consensus 506 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--------~~l 577 (1004)
++-.+.+.|+++.|+..|+...+ ..|+..+--.|+-++..-|+.++..+.|.+|......||..-| ..|
T Consensus 282 igvtfiq~gqy~dainsfdh~m~---~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCME---EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHH---hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 77788888999999988888766 5666665444555666678888888888888765443433322 112
Q ss_pred HHHHHcCCC--------hHHHHHHH---HHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 048751 578 VQMFAGGDL--------MGQAVDLL---AEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGS 646 (1004)
Q Consensus 578 l~~~~~~~~--------~~~a~~~~---~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 646 (1004)
+.--.+... -..|.+.. .+++.--+.|+.. . -.+..++.++.-....+..+.. ..
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~-g~dwcle~lk~s~~~~la~dle--i~ 424 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------A-GCDWCLESLKASQHAELAIDLE--IN 424 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------c-ccHHHHHHHHHhhhhhhhhhhh--hh
Confidence 211111110 01111111 1111111111110 1 1233344443332211111111 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 647 LINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK--IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
-...|.++|+++.|+++++-+...+-+.-...-+.|...+.- -.++..|.+..+....... -+......-.+.-...
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeec
Confidence 234577899999999999888765443333333333333322 3467777777766654322 1333333333445567
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|++++|.+.|.+....+.....+...+...+...|++++|++.|-++... +..+..+...+...|....+..+|++++.
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 89999999999998877666777777788888999999999999887652 22456777888888999999999999998
Q ss_pred HHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHH-HHHHHHHhhhHhhhhHHHHHHhhhccCCc
Q 048751 805 EMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAII-TSVYSVVGLNALALGTCETLIKAEAYLDS 883 (1004)
Q Consensus 805 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~~A~~~~~~~~~~~~~~~~ 883 (1004)
+.... ++.|+..+..+...|-+.|+..+|....-..++-.|......-| +..|....-.++|+..|+++.-. .|+.
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~ 659 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQ 659 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccH
Confidence 77543 55677788889999999999888887777666655544333222 23333334444455555544333 2344
Q ss_pred hhHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048751 884 FIYNVAIY-AFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGL 933 (1004)
Q Consensus 884 ~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~ 933 (1004)
.-|..++. ++.+.|++++|+++|+...++ +.-|..++..|++.|...|.
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 44544443 223445555555555554432 21144455555555444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-14 Score=169.69 Aligned_cols=445 Identities=10% Similarity=0.005 Sum_probs=254.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 502 TLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSV-VEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQM 580 (1004)
Q Consensus 502 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 580 (1004)
+...-+-...+.|+++.|+..|.++.+ ..|+. .....++..+...|+.++|+..+++..... .........+...
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~l 111 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESK---AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh---hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHH
Confidence 333344444555555555555555544 22221 111144455555555555555555554210 1112222222334
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 581 FAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEA 660 (1004)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 660 (1004)
+...|++++|.++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 455555555555555555542 233444445555555555555555555555543 34433333333333333444445
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHH---------HcC---C
Q 048751 661 LQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVAS--NTMISLYA---------ELG---M 726 (1004)
Q Consensus 661 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~---------~~g---~ 726 (1004)
++.++++.+..+ .+...+..+..++.+.|-...|.++..+-... +.+....+ ...+.-.+ ... -
T Consensus 189 L~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 189 LQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 555555555432 23444455555555555555555444331100 01010000 00000000 011 2
Q ss_pred HHHHHHHHHHHHHcC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 727 VTEAESMFNDIREKG---QVD----AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQC 799 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 799 (1004)
.+.|+.-++.+.... |+. ..+..-.+-++...|++.++++.|+.+...+......+-..+.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 455666666666533 322 1233455667788888888888888888777543455667788888888888888
Q ss_pred HHHHHHHHHCCC-----CCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCC------------chh----hhHHHHHH
Q 048751 800 GELLHEMLTQKL-----LPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKP------------YAS----EAIITSVY 858 (1004)
Q Consensus 800 ~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~------------~~~----~~~~~~l~ 858 (1004)
..+|+++..... .++......|+-++...++.++|..+++++.+..|. .+. ....+..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 888888855421 222333466788888888888888888888774441 111 11234456
Q ss_pred HHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHH
Q 048751 859 SVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGV 937 (1004)
Q Consensus 859 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A 937 (1004)
...|++.+|.+.+++++... |-|......++..+...|+..+|.+.++.+.. +.| |..+....+.++...|++++|
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHH
Confidence 78889999999999998776 55889999999999999999999999977765 578 466778888888899999999
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHH
Q 048751 938 KRIHSQLKYGKMEPNENLFKAVI 960 (1004)
Q Consensus 938 ~~~~~~~~~~~~~p~~~~~~~l~ 960 (1004)
..+.+.+. ...|+......|-
T Consensus 504 ~~~~~~l~--~~~Pe~~~~~~l~ 524 (822)
T PRK14574 504 ELLTDDVI--SRSPEDIPSQELD 524 (822)
T ss_pred HHHHHHHH--hhCCCchhHHHHH
Confidence 99988775 3466654444433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-13 Score=138.67 Aligned_cols=133 Identities=23% Similarity=0.301 Sum_probs=113.2
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 322 KPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNI 401 (1004)
Q Consensus 322 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 401 (1004)
.|....+|..||.++||-...+.|.+++++-.....+.+..+||.+|.+-. +....+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHH
Confidence 366778999999999999999999999999988877899999999997643 3333899999999999999999999
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 048751 402 LLSLYADVGNINA----ALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQE-AEAVIIEME 458 (1004)
Q Consensus 402 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~ 458 (1004)
++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 9999999998765 56778999999999999999999999998887644 445555554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-13 Score=149.15 Aligned_cols=683 Identities=12% Similarity=0.072 Sum_probs=370.4
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh
Q 048751 162 QKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVT 241 (1004)
Q Consensus 162 ~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 241 (1004)
..|..||..+|..+|.-||..|+.+.|- +|.-|.-...+.+...|+.++.+...+++.+.+. .|...|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 4688999999999999999999999998 8888888888888899999999999999887775 788899
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhccccccccccc--------ccccccC-CCCcchhhHH-------HhHHHHhcCCCC
Q 048751 242 MNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLE--------LDSTDDL-GSMPVSFKHF-------LSTELFRTGGRN 305 (1004)
Q Consensus 242 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~ 305 (1004)
|..|..+|...|+...-..+=+.+........+.. +-.+.+. +..|...... +...+.+.+...
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999987663333222322111111110 0010011 1111111110 111112222111
Q ss_pred ccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHccCCHHHHHHHH
Q 048751 306 PISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGV-AVDTITFNTMIYTCGSHGNLSEAEALF 384 (1004)
Q Consensus 306 ~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~A~~l~ 384 (1004)
|.... ..| ....++-+... ..-..++.+..++ +. .|+..+|..++.+-...|+.+.|..++
T Consensus 166 Pvsa~----------~~p-----~~vfLrqnv~~--ntpvekLl~~cks-l~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 166 PVSAW----------NAP-----FQVFLRQNVVD--NTPVEKLLNMCKS-LVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred Ccccc----------cch-----HHHHHHHhccC--CchHHHHHHHHHH-hhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 11000 001 00012221111 1122222222222 22 489999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048751 385 CMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHI 464 (1004)
Q Consensus 385 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 464 (1004)
.+|+++|++.+..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+-.+..+|....+.+. ..
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~--------sq- 295 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG--------SQ- 295 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc--------cc-
Confidence 999999988777656566555 788888999999999999999999988777666665543222111 11
Q ss_pred CCCcHHHHHHHHHhcC-----CHH-----HHHHHHHHh-hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhh--cC
Q 048751 465 DEHSVPGVMKMYINEG-----LLH-----QAKIIFKKC-QLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDL--VG 531 (1004)
Q Consensus 465 ~~~~~~~l~~~~~~~g-----~~~-----~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 531 (1004)
....++.-+..-.-.| +++ -....+++. +........+|..... ...+|+-++.+++-..+..- .-
T Consensus 296 ~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~ 374 (1088)
T KOG4318|consen 296 LAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRD 374 (1088)
T ss_pred hhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCcccc
Confidence 1111111111111111 000 011111111 1111111122211111 11133322222222111100 00
Q ss_pred CCCCHHHHHHHHHHHHc----------------------CCChhHHHHHHHHHHH----------------CCCCC----
Q 048751 532 QKKSVVEYNVMIKAYGK----------------------SKLYDKAFSLFKVMKN----------------LGTWP---- 569 (1004)
Q Consensus 532 ~~~~~~~~~~li~~~~~----------------------~g~~~~A~~l~~~m~~----------------~g~~p---- 569 (1004)
...++..|..++.-|.+ .....+..+++..... +...|
T Consensus 375 s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 375 SGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred CcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhh
Confidence 01111112111111111 1111111111111100 00000
Q ss_pred ---CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--CCCCHHHH
Q 048751 570 ---DECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAG--VEPNEVVY 644 (1004)
Q Consensus 570 ---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~ 644 (1004)
-...-+.++..++..-+..+++..-+.....-+ + ..|..||+-++.....+.|..+.++..... +.-|..-+
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 111224445555555555555544333333211 1 468889999999999999999988876422 23345567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWAN--QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYA 722 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1004)
..+.+.+.+.+....+..++.++.+.-...+ ..++--+++.....|+.+...++++-+...|..-+ .-++....
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhL 607 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHL 607 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEe
Confidence 8888888999999999999988876422222 34555667777888888888888888776665331 11222233
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHH---HHHHH------------------HHHHHhcCCHHHHHHHHHHH----------
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAV---SFAAM------------------MYLYKTMGMLDEAIDAAEEM---------- 771 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l------------------~~~~~~~g~~~~A~~~~~~~---------- 771 (1004)
+.++...|.++++...+...+.+. .+..+ +..|.+.|++.+|.++.+--
T Consensus 608 rkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr 687 (1088)
T KOG4318|consen 608 RKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDR 687 (1088)
T ss_pred eccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCcc
Confidence 344444455444444433322221 11111 12355666666655443210
Q ss_pred -HHCC-CCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCC---cHHHHHH
Q 048751 772 -KLSG-LLR---------DVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGF---PIEAVKQ 837 (1004)
Q Consensus 772 -~~~~-~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~ 837 (1004)
...| +.| +......|+..|.+.|+++.|..+|.++. +.|...+...+...+.+... ..++...
T Consensus 688 ~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e 764 (1088)
T KOG4318|consen 688 DTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAE 764 (1088)
T ss_pred ccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHH
Confidence 0000 000 11223457888999999999999999986 78888888888888776543 3444444
Q ss_pred HHhHhhccCCchh--hhHHH-HHHHHHhhhH-hhhhHHHHHHhhhccCCchhHHHHHHHHHhcC
Q 048751 838 LQSSYQEVKPYAS--EAIIT-SVYSVVGLNA-LALGTCETLIKAEAYLDSFIYNVAIYAFKSSG 897 (1004)
Q Consensus 838 l~~~~~~~~~~~~--~~~~~-~l~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 897 (1004)
.+.+....+.++. ..... ..+..+++.. .|.+.+++..++..+.+...+...++++....
T Consensus 765 ~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 765 TEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred HHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 4454444433333 22222 2444455554 68888888888876767777777777776654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-14 Score=145.44 Aligned_cols=481 Identities=14% Similarity=0.151 Sum_probs=325.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 048751 329 YNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFN-TMIYTCGSHGNLSEAEALFCMMEESRISPD----TKTYNILL 403 (1004)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li 403 (1004)
...|..-|..+..+.+|+..++-+.+...-|+.-... .+.+.+.+...+.+|++.|+..+..-+..+ +...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3445666777788999999999999887778766543 345678889999999999998887532222 23566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcH--------HHHHHH
Q 048751 404 SLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSV--------PGVMKM 475 (1004)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--------~~l~~~ 475 (1004)
-.+.+.|++++|+..|+...+. .|+..+--.|+-++...|+.++..+.|..|+.....+|..-| ..++.-
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 7788999999999999998884 588877666777777889999999999999876555544322 122222
Q ss_pred HHhcCCH--------HHHHHHHHHh-hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHH
Q 048751 476 YINEGLL--------HQAKIIFKKC-QLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAY 546 (1004)
Q Consensus 476 ~~~~g~~--------~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (1004)
..+...+ ..|.+..-.. ....|.-...+. .| .+...+.+..... .+.-...--.-...+
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa--------~g-~dwcle~lk~s~~---~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA--------AG-CDWCLESLKASQH---AELAIDLEINKAGEL 429 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh--------cc-cHHHHHHHHHhhh---hhhhhhhhhhHHHHH
Confidence 2211111 1111111000 000000000000 00 0111111111000 000000001112347
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 048751 547 GKSKLYDKAFSLFKVMKNLGTWPDECTYNSL--VQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSN 624 (1004)
Q Consensus 547 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 624 (1004)
.+.|+++.|+++++-+.+..-+..+..-+.| +..+....++..|.++-+..+... .-+....+.-.+.-...|++++
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHH
Confidence 8999999999999988776433233333322 233333456778887777766532 2233333333333445799999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 625 AVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKE 704 (1004)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 704 (1004)
|.+.|++....+.......|| +.-.+...|+.++|++.|-.+..- +.-+..++..+.+.|--..+...|++++.+...
T Consensus 509 a~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 999999998654322233333 333567789999999999887643 234667788888889999999999999988776
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048751 705 MEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYN 784 (1004)
Q Consensus 705 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 784 (1004)
. ++.|+.+...|.+.|-+.|+-.+|.+.+-..-.-.|.+..+...|..-|....-+++|+.+|++..- +.|+..-|.
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwq 663 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ 663 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH
Confidence 4 4558889999999999999999999998888888899999999999999999999999999999876 569999998
Q ss_pred HHHHH-HHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCC
Q 048751 785 QVMAC-FATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGF 830 (1004)
Q Consensus 785 ~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 830 (1004)
.++.. +.+.|++.+|+++|+.... .++.|..++..+++.+...|.
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 77664 5678999999999999854 478889999999998887774
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-13 Score=135.28 Aligned_cols=365 Identities=15% Similarity=0.156 Sum_probs=218.0
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 048751 532 QKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSS 611 (1004)
Q Consensus 532 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 611 (1004)
.+.+..+|..||.+.|+--..+.|.+++++......+.+..+||.+|.+-+- ....+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHH
Confidence 4555667778888888877788888888877776666777777777765432 223667777777777777777777
Q ss_pred HHHHHHHcCCHhHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 612 VIAAYARLGQLSNA----VDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEE-ALQYFRMMRECGLWANQIVLTSLIKAY 686 (1004)
Q Consensus 612 li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~~~~~~~~~li~~~ 686 (1004)
++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~---------------- 342 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS---------------- 342 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh----------------
Confidence 77777777766544 3455666666777777777666666666655433 22233332211
Q ss_pred HHcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHH
Q 048751 687 SKIGCLEGAKQVYEKMKEMEG----GPDTVASNTMISLYAELGMVTEAESMFNDIREKG-----QVD---AVSFAAMMYL 754 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~ 754 (1004)
+.-+.+ +-+...+..-++.|.+..+.+-|.++..-+.... +++ ...|..+..+
T Consensus 343 ---------------ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~l 407 (625)
T KOG4422|consen 343 ---------------LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDL 407 (625)
T ss_pred ---------------hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHH
Confidence 000001 1122233333444444444444444443332221 111 2235566667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCC-Cc-H
Q 048751 755 YKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGG-FP-I 832 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~-~ 832 (1004)
.|+....+.-...|+.|.-.-+.|+..+...++++..-.|+++-.-++|..++..|..-+......++..+++.. .+ .
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~t 487 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLT 487 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCC
Confidence 777778888888888888776668888888888888888888888888888877765544444444444444333 11 0
Q ss_pred HHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHH-HHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 833 EAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTC-ETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 833 ~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
-+.+.+..... -..-+..++.+.. +++.+ ...++...+..+-.+.+.|+.++|.+++.-+.+
T Consensus 488 p~r~Ql~~~~a---------------k~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~ 550 (625)
T KOG4422|consen 488 PEREQLQVAFA---------------KCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLR 550 (625)
T ss_pred hHHHHHHHHHH---------------HHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHh
Confidence 11222221111 0111122222222 22222 244666788888899999999999999999976
Q ss_pred CCC-CC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 048751 912 QGL-EP---DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGK 948 (1004)
Q Consensus 912 ~g~-~p---d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 948 (1004)
.|- -| -..+..-+++.-........|...++.+...+
T Consensus 551 ~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 551 KHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 543 23 33334456666667777788888887775443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-13 Score=148.55 Aligned_cols=688 Identities=13% Similarity=0.084 Sum_probs=370.8
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccc
Q 048751 190 LRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGR 269 (1004)
Q Consensus 190 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 269 (1004)
.+|-.+...|+.|+-+||..||.-||..|+.+.|- +|.-|.......+...++.++.+...+++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35666778899999999999999999999999888 8998888877778888888888777666654432
Q ss_pred cccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHH---HH
Q 048751 270 LELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQD---AA 346 (1004)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~---A~ 346 (1004)
.+.+.+|+.|..+|...||+.. +.
T Consensus 80 -----------------------------------------------------ep~aDtyt~Ll~ayr~hGDli~fe~ve 106 (1088)
T KOG4318|consen 80 -----------------------------------------------------EPLADTYTNLLKAYRIHGDLILFEVVE 106 (1088)
T ss_pred -----------------------------------------------------CCchhHHHHHHHHHHhccchHHHHHHH
Confidence 1226789999999999998654 33
Q ss_pred HHHHHHH----HCCC-----------------CcCHHHHHHHHHHHHccCCHHHHHHHH----------------HHHH-
Q 048751 347 NVFAEML----KSGV-----------------AVDTITFNTMIYTCGSHGNLSEAEALF----------------CMME- 388 (1004)
Q Consensus 347 ~~~~~m~----~~g~-----------------~p~~~t~~~ll~~~~~~g~~~~A~~l~----------------~~m~- 388 (1004)
+.+..+. ..|+ -||..+. +....-.|-++.+++++ +++.
T Consensus 107 qdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~ 183 (1088)
T KOG4318|consen 107 QDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVV 183 (1088)
T ss_pred HHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhcc
Confidence 3222211 1121 1232221 11111223333333332 2221
Q ss_pred ------------HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 389 ------------ESRI-SPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVII 455 (1004)
Q Consensus 389 ------------~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 455 (1004)
+.+. .|+..+|.+++..-..+|+++.|..++.+|++.|+.-+..-|-.|+-+ .++..-+..++.
T Consensus 184 ~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlr 260 (1088)
T KOG4318|consen 184 DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLR 260 (1088)
T ss_pred CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHH
Confidence 1111 488889999999999999999999999999999988777655555544 788888899999
Q ss_pred HHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHH-----HHHHhhhhhhc
Q 048751 456 EMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEA-----ETVFYGKRDLV 530 (1004)
Q Consensus 456 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~~~~~~ 530 (1004)
-|.+.|+.|+..|+...+..+...|....+.+...- ........+..+.+......+.+.- ...+.+.. ..
T Consensus 261 gmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~---~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~f-Ll 336 (1088)
T KOG4318|consen 261 GMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL---AHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLF-LL 336 (1088)
T ss_pred HHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch---hhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHH-Hh
Confidence 999999999999998888877775553222221110 0111122223332221111111111 11111110 01
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHcCCChHHHHHHHH--HHHhCCCCCC
Q 048751 531 GQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLG--TWP-DECTYNSLVQMFAGGDLMGQAVDLLA--EMQGAGFKPQ 605 (1004)
Q Consensus 531 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~--~m~~~g~~~~ 605 (1004)
|.......|...+.. ...|+-++..++-..|..-. ..+ ++..|..++.-|.+.-..-....++. ..+.. ..+
T Consensus 337 g~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~ 413 (1088)
T KOG4318|consen 337 GTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL--NLN 413 (1088)
T ss_pred ccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhc
Confidence 222233445443333 23677777777766664321 111 23344444433332111111111111 00000 000
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHH----cCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRR----AGV-------EPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWA 674 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 674 (1004)
....-.++....+. +...+.+-+..+.. .-. .+-...-+.++..++..-+..+++..-+.....-+ +
T Consensus 414 se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~ 491 (1088)
T KOG4318|consen 414 SEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A 491 (1088)
T ss_pred hhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence 00001111111111 11112111111110 000 11123445666667766666666655444433211 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHH
Q 048751 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG--GPDTVASNTMISLYAELGMVTEAESMFNDIREKG---QVDAVSFA 749 (1004)
Q Consensus 675 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 749 (1004)
..|..||+-++...+.+.|..+.++...... ..+..-+..+.+.+.+.+....+.+++..+.+.- +....+..
T Consensus 492 --g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f 569 (1088)
T KOG4318|consen 492 --GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILF 569 (1088)
T ss_pred --hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHH
Confidence 5688888888888888888888888765332 3455567778888888888888888888887643 22234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-----
Q 048751 750 AMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTI----- 824 (1004)
Q Consensus 750 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~----- 824 (1004)
.+.+.....|+.+.-.++++-+...|+... --++....+.++...|.+..+..... ..|.+.....+.+.
T Consensus 570 ~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~ 644 (1088)
T KOG4318|consen 570 PLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKET 644 (1088)
T ss_pred HHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhc
Confidence 666777778888877777777776655332 12223334455555555554443221 23333333322222
Q ss_pred ----------------HHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhh---hHh-hhhHHHHHHhhhccCCch
Q 048751 825 ----------------LKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGL---NAL-ALGTCETLIKAEAYLDSF 884 (1004)
Q Consensus 825 ----------------~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-A~~~~~~~~~~~~~~~~~ 884 (1004)
+.++|+..+|.+..+..-- .++.++ .++ -+...+..++.. .+..
T Consensus 645 td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~--------------r~r~~RDr~~de~e~~~lEll~elt--~~lg 708 (1088)
T KOG4318|consen 645 TDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGV--------------RCRNGRDRDTDEGEIVPLELLLELT--HELG 708 (1088)
T ss_pred cccHHHHHhhcchhHHHHhcccccchhhccccCcc--------------cccCCCccccccCccccHHHHHHHH--hHhH
Confidence 2333333333332221110 010000 000 011122222221 1223
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHH-cCCCCCcHHH-HHHH
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAG---LVEGVKRIHSQLK-YGKMEPNENL-FKAV 959 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g---~~~~A~~~~~~~~-~~~~~p~~~~-~~~l 959 (1004)
...-|+..|..+|+++.|..+|.++. +.|+..+...|+..+.+.. ++.++..-.+++. .....|.++. |.-.
T Consensus 709 ~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~ 785 (1088)
T KOG4318|consen 709 KNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGY 785 (1088)
T ss_pred HHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhh
Confidence 33448889999999999999999997 7899999999988887543 3344544444442 2233344333 2333
Q ss_pred HHHHHhcCChhHHHHHHHHHHhh
Q 048751 960 IDAYRNANREDLADLACQEMRTA 982 (1004)
Q Consensus 960 ~~~~~~~g~~~~A~~~~~~m~~~ 982 (1004)
+-....-...+-|.+++++...+
T Consensus 786 a~~a~q~~qkkaAkk~f~r~eeq 808 (1088)
T KOG4318|consen 786 AFFATQTEQKKAAKKCFERLEEQ 808 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHc
Confidence 33333333445678888877765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-11 Score=123.13 Aligned_cols=459 Identities=11% Similarity=0.042 Sum_probs=279.2
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 048751 490 KKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWP 569 (1004)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 569 (1004)
+..+..+..+...|...+..-..++++..|..+|+++++. ...++..|-..+.+-.++..+..|..+++.....=+..
T Consensus 63 Ed~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 63 EDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 3333344444555666666666677777777777777663 56666677777777777777778888877776643222
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048751 570 DECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLIN 649 (1004)
Q Consensus 570 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 649 (1004)
|. .|-..+.+--..|++..|.++|+.-.+ ..|+...|.+.|+.-.+-..++.|..++++..-. .|++.+|--...
T Consensus 141 dq-lWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyar 215 (677)
T KOG1915|consen 141 DQ-LWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYAR 215 (677)
T ss_pred HH-HHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHH
Confidence 22 233334444456778888888877765 3678888888888878888888888888877653 578888777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 048751 650 GFAATGKVEEALQYFRMMRECGL--WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD-TVASNTMISLYAELGM 726 (1004)
Q Consensus 650 ~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 726 (1004)
-=.+.|+...|..+|...++.-- ..+...+.++..--.++..++.|.-+|+-.+..-+... ...|..+...--+-|+
T Consensus 216 FE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 216 FEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 77777888888888777665310 01122333444333456677777777777766433211 2344444444444455
Q ss_pred H---HHHHH-----HHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-----HH-
Q 048751 727 V---TEAES-----MFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV--ISYNQVMA-----CF- 790 (1004)
Q Consensus 727 ~---~~A~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-----~~- 790 (1004)
. ++++- -|+.+...+|.|..+|...+......|+.+...++|++++.. ++|-. ..|...|. +|
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHH
Confidence 3 33322 255666777778888888888888888888888888888764 33321 12222111 11
Q ss_pred --HHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH----HcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhh
Q 048751 791 --ATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTIL----KKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLN 864 (1004)
Q Consensus 791 --~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 864 (1004)
....+.+.+.++|+..++. ++....|+..+--.| .++.++..|.+.+..++-..|..-.---+..+=...+++
T Consensus 375 eEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF 453 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH
Confidence 3456777788888887762 333344554433333 255667777777777766665544333334445566777
Q ss_pred HhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 048751 865 ALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGL-EPDIVTCINLVGCYGKAGLVEGVKRIHSQ 943 (1004)
Q Consensus 865 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~l~~~~~~~g~~~~A~~~~~~ 943 (1004)
+....+|++.++-+ |.+..+|...+..=...|++|.|..+|+-++.+.. .--...|-.-|+--...|.++.|..++++
T Consensus 454 DRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 454 DRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence 77777777777765 34667777777666777777777777777765311 11122344444444466777777777776
Q ss_pred HHcCCCCCcHHHHHHHH
Q 048751 944 LKYGKMEPNENLFKAVI 960 (1004)
Q Consensus 944 ~~~~~~~p~~~~~~~l~ 960 (1004)
+... .+-..+|-.++
T Consensus 533 lL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 533 LLDR--TQHVKVWISFA 547 (677)
T ss_pred HHHh--cccchHHHhHH
Confidence 6432 23333444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-10 Score=117.75 Aligned_cols=444 Identities=10% Similarity=0.072 Sum_probs=286.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 048751 329 YNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDT-KTYNILLSLYA 407 (1004)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~ 407 (1004)
|.--..--..++++..|..+|++.+... .-+...|..-+..-.+...+..|..+++..... -|-+ ..|--.+..--
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHH
Confidence 4444444455778889999999998765 346667777788888999999999999999875 3443 45666666777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHH
Q 048751 408 DVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKI 487 (1004)
Q Consensus 408 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 487 (1004)
..|++..|.++|++-.+ ..|+.-.|.+.|..-.+-+..+.|..++++.+-. .|+..++...+.--.+.|....|..
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 78999999999999887 6799999999999999999999999999998864 4788888888888888999999999
Q ss_pred HHHHhhhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCC---hhHHHH----
Q 048751 488 IFKKCQLDGGLS---SKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKL---YDKAFS---- 557 (1004)
Q Consensus 488 ~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~---- 557 (1004)
+++.+......+ ...+.+.+..-.++..++.|..+|.-..+..........|..+...--+-|+ +++++-
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 999887644333 3466667777777888888888888877743222224445554444334444 333332
Q ss_pred -HHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH--------HHcCCHhHHH
Q 048751 558 -LFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCL--TFSSVIAAY--------ARLGQLSNAV 626 (1004)
Q Consensus 558 -l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~--------~~~g~~~~A~ 626 (1004)
-++++...+. -|-.+|-..+......|+.+...++|+.++.. ++|-.. .|...|-.. ....+.+.+.
T Consensus 309 ~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2334444443 36667777777777778888888888887764 344211 122222111 2345666666
Q ss_pred HHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 627 DLFHEMRRAGVEPNEVVYGS----LINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKM 702 (1004)
Q Consensus 627 ~~~~~m~~~g~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 702 (1004)
++|+...+. ++....||.- ...--.++.++..|.+++-..+. .-|...+|...|..-.+.++++.+..++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666552 2223333332 22333345556666666655543 2355556666666666666666666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048751 703 KEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQ--VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV 780 (1004)
Q Consensus 703 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 780 (1004)
++.++. +..+|......-...|+.+.|..+|+-+..... .....|-+.|.--...|.++.|..+++++++.. +..
T Consensus 464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~ 540 (677)
T KOG1915|consen 464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHV 540 (677)
T ss_pred HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccc
Confidence 665443 455555555555566666666666666655542 233455555666666666666666666666533 333
Q ss_pred HHHHHHH
Q 048751 781 ISYNQVM 787 (1004)
Q Consensus 781 ~~~~~l~ 787 (1004)
.+|.+..
T Consensus 541 kvWisFA 547 (677)
T KOG1915|consen 541 KVWISFA 547 (677)
T ss_pred hHHHhHH
Confidence 3444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-12 Score=133.85 Aligned_cols=414 Identities=13% Similarity=-0.007 Sum_probs=229.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC-CCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCH
Q 048751 438 LHILCQRNMVQEAEAVIIEMEKCGLHID-EHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLW 516 (1004)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 516 (1004)
.+-+.++|.+++|++.+.+.++.. |+ +.-|.....+|...|++++..+.-.+.++-+|.-+.++..-+.++-..|++
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence 344666777777777777776643 34 566677777778888888888888888888888888888888889999998
Q ss_pred HHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHH--------HHHHH-CC--CCCCHHHHHHHHHHHHcCC
Q 048751 517 AEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLF--------KVMKN-LG--TWPDECTYNSLVQMFAGGD 585 (1004)
Q Consensus 517 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~--------~~m~~-~g--~~p~~~t~~~ll~~~~~~~ 585 (1004)
++|..-.. -.++...+....-.-.+.+++ ++-.+ .+ +.|......+....+...-
T Consensus 200 ~eal~D~t--------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 200 DEALFDVT--------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred HHHHHhhh--------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 88865322 122222222222222222222 22222 22 3355544444444332110
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC---CHhHHHHHHHHHHHc-CCC-----CCH------HHHHHHH
Q 048751 586 LMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYAR--LG---QLSNAVDLFHEMRRA-GVE-----PNE------VVYGSLI 648 (1004)
Q Consensus 586 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~-g~~-----p~~------~~~~~li 648 (1004)
......+.......+..++.. .+ .+..|...+.+-... -.. .|. .+.....
T Consensus 266 ------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 266 ------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred ------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 000000000111111111110 01 122232222221110 000 011 1111111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048751 649 NGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVT 728 (1004)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 728 (1004)
.-+.-.|+...|.+-|+..+.....++. .|..+...|....+.++....|+...+.++. ++.+|..-..++.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 1122346666777777777765543332 2555666677777777777777777666554 4555656666666667777
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 729 EAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 729 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
+|..-|++.....|.++..|..+..+..+.++++++...|++.+++- |+ +..|+.....+..++++++|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777642 44 5667777777777777777777777765
Q ss_pred HCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHH
Q 048751 808 TQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYN 887 (1004)
Q Consensus 808 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 887 (1004)
+. .|+......=+.-+. .+|+ .++.-.+++.+|++++.++++.++. .-.+|.
T Consensus 490 ~L--E~~~~~~~v~~~plV-----~Ka~--------------------l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~ 541 (606)
T KOG0547|consen 490 EL--EPREHLIIVNAAPLV-----HKAL--------------------LVLQWKEDINQAENLLRKAIELDPK-CEQAYE 541 (606)
T ss_pred hh--ccccccccccchhhh-----hhhH--------------------hhhchhhhHHHHHHHHHHHHccCch-HHHHHH
Confidence 42 332110000000000 0010 0111236777788888888887643 557888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 048751 888 VAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 888 ~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
.|+..-.+.|+.++|+++|++...
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888888887764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-12 Score=144.88 Aligned_cols=284 Identities=10% Similarity=-0.004 Sum_probs=184.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 654 TGKVEEALQYFRMMRECGLWANQI-VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAES 732 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (1004)
.|+++.|.+.+....+.. +++. .|.....+..+.|+++.|.+.+.++.+....+...........+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 577777776666654432 1222 2333344446778888888888777664333222222233567777888888888
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 733 MFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV-------ISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
.++++.+..|.++.++..+...|.+.|++++|++++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 888888888888888888888888888888888888888776553222 1223333333334444555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchh
Q 048751 806 MLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFI 885 (1004)
Q Consensus 806 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 885 (1004)
+.+. .+.+......+...+...|+.++|.+.+++.++..+.......++. ...++.+++++.+++.++.. |.|+..
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~-P~~~~l 330 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQH-GDTPLL 330 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhC-CCCHHH
Confidence 4222 3445666677777788888888888888777763322111111111 22366667777777777665 457777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 886 YNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 886 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
+..++..+.+.|++++|.+.|+++.+ ..|+..++..+..++.+.|+.++|...+++..
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 78888888888888888888888877 57888887888888888888888888777653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-11 Score=128.41 Aligned_cols=503 Identities=12% Similarity=-0.006 Sum_probs=280.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 048751 430 DSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDV 509 (1004)
Q Consensus 430 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 509 (1004)
+..-+..+++-+....++.-|.-+-++....+ -|+.....+++++.-.|+++.|..+...- .....+..+....+.+
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKC 91 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHH
Confidence 34445555555555666666666666665544 45555666777777777777777666554 2223445556666666
Q ss_pred HHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHH
Q 048751 510 YAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQ 589 (1004)
Q Consensus 510 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 589 (1004)
+.+..++++|..++.... +..+...|..--. ...-..+.+. ++.. .......+-.-...|....+.++
T Consensus 92 l~~lk~~~~al~vl~~~~----~~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGH----VETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHhcccc----hhhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHH
Confidence 777777777776665320 1111111100000 0000000000 0000 00000011111122334455666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 590 AVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAG----VEPNEVVYGSLINGFAATGKVEEALQYFR 665 (1004)
Q Consensus 590 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 665 (1004)
|...|.+.+.. |...+.++...-.. .+-.+.+.|+.+.... ..-+......+.........-++....-.
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~ 233 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNE 233 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence 66666665542 33333222211110 1111111121111100 01111111111111100000000000001
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 048751 666 MMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDA 745 (1004)
Q Consensus 666 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (1004)
+..-.+..-+......-.+-+...+++.+..++.+.+.+..+ ++...+-.-|.++...|+-.+-..+=.++.+..|..+
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a 312 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA 312 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC
Confidence 011112334555556666667777888888888888777543 3444455555677788887777777778888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTI 824 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 824 (1004)
.+|.+++.-|.-.|++++|.+.|.+... +.|. ...|......|+..|..++|+..+...-+. ++....-+..+.--
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGME 389 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHH
Confidence 8888888888888888888888888765 3344 567888888888888888888888777432 11111122333344
Q ss_pred HHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCC------chhHHHHHHHHHhcC
Q 048751 825 LKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLD------SFIYNVAIYAFKSSG 897 (1004)
Q Consensus 825 ~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 897 (1004)
|.+.+...-|.+++.+++...|.++. ...++-+....+.+.+|...|++.+......+ ..+++.|+.+|.+.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 66677888888888888888777665 23344455667777888888877763321111 234788888888888
Q ss_pred ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 048751 898 KNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVID 961 (1004)
Q Consensus 898 ~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 961 (1004)
++++|+..|++.+. ..| |..|+..+.-++...|+++.|...+.+.. .+.|+...-..++.
T Consensus 470 ~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 470 KYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred hHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 88888888888887 455 77788888888888888888888887765 56787654444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.1e-09 Score=113.66 Aligned_cols=524 Identities=13% Similarity=0.088 Sum_probs=279.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCH
Q 048751 406 YADVGNINAALRYYWKIREVGLFPDSVTQRAILHI---LCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLL 482 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 482 (1004)
+-+.+..++++.-+......+..-+..++..+-.+ |+..++.+++ ++-.......-|.. +.
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re--------------~~ 300 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRE--------------NI 300 (799)
T ss_pred hcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccc--------------cH
Confidence 33456666777777777666665555555554332 3345555555 33333322222221 11
Q ss_pred HHHHHHH----HHhh-hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 048751 483 HQAKIIF----KKCQ-LDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFS 557 (1004)
Q Consensus 483 ~~A~~~~----~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 557 (1004)
+++.-.. +++. .....++.++..+.-.+...|+++.+.+.|++.... .-.....|+.+...|...|.-..|+.
T Consensus 301 ~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ 378 (799)
T KOG4162|consen 301 EDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVN 378 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHH
Confidence 2221111 1111 111234455556666667777777777777665432 33344557777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-HHHH-cCCChHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 048751 558 LFKVMKNLGTWPDECTYNSLV-QMFA-GGDLMGQAVDLLAEMQGA--GF--KPQCLTFSSVIAAYARLGQLSNAVDLFHE 631 (1004)
Q Consensus 558 l~~~m~~~g~~p~~~t~~~ll-~~~~-~~~~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 631 (1004)
++++-......|+..+--.++ ..|. +.+.++++..+-.++++. +. ......|-.+.-+|...
T Consensus 379 ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~------------ 446 (799)
T KOG4162|consen 379 LLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQ------------ 446 (799)
T ss_pred HHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhH------------
Confidence 776655543333333222222 2222 334555555554444431 00 01111222222222110
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 048751 632 MRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDT 711 (1004)
Q Consensus 632 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 711 (1004)
... ++..+ .+.....++++.+++..+.+. .|+.+.-.+.--|...++++.|.+..++..+.+..-+.
T Consensus 447 A~~----a~~~s--------eR~~~h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~ 513 (799)
T KOG4162|consen 447 ARQ----ANLKS--------ERDALHKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSA 513 (799)
T ss_pred hhc----CCChH--------HHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH
Confidence 000 00000 001123456677777766554 23333333444566677778888888777777666677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFA 791 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 791 (1004)
..|..++-.+...+++.+|+.+.+...+..+.|......-+..-..-++.++|+.....++.. -.+.....
T Consensus 514 ~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q------- 584 (799)
T KOG4162|consen 514 KAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQ------- 584 (799)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHh-------
Confidence 777777777777788888888888777776666555555555555566777776665555431 00000000
Q ss_pred HcCCHHHHHHHHHHHHH-CC-CCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh----h---hHHHHHHHHHh
Q 048751 792 TNGQLRQCGELLHEMLT-QK-LLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS----E---AIITSVYSVVG 862 (1004)
Q Consensus 792 ~~g~~~~A~~~~~~~~~-~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~----~---~~~~~l~~~~~ 862 (1004)
..++-....+....+.- .. ..-...++..+.......+....-...+........+... . ...+.++...+
T Consensus 585 ~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~ 664 (799)
T KOG4162|consen 585 QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSG 664 (799)
T ss_pred hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 00111111111111100 00 0011112322222221111100000001111111111110 1 12233456666
Q ss_pred hhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHH--
Q 048751 863 LNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKR-- 939 (1004)
Q Consensus 863 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~-- 939 (1004)
..++|...+.++-+.. +..+..|+..+..+...|.+.+|.+.|...+. +.|| +.....+..++.+.|+..-|..
T Consensus 665 ~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~ 741 (799)
T KOG4162|consen 665 NDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRS 741 (799)
T ss_pred CchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHH
Confidence 7777777777776664 55778899999999999999999999999887 7896 5577888889999998876666
Q ss_pred HHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCC
Q 048751 940 IHSQLKYGKMEPN-ENLFKAVIDAYRNANREDLADLACQEMRTAFESP 986 (1004)
Q Consensus 940 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 986 (1004)
++..+.. +.|+ ...|..++.++.+.|+.+.|.+.++......++.
T Consensus 742 ~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 742 LLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 8777763 4676 7899999999999999999999998776555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-12 Score=144.84 Aligned_cols=291 Identities=13% Similarity=0.031 Sum_probs=171.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 652 AATGKVEEALQYFRMMRECGLWAN-QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEA 730 (1004)
Q Consensus 652 ~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 730 (1004)
...|+++.|.+.+....+.. |+ ...+-....+..+.|+.+.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 34678888888887766643 33 2334445566777788888888888876654333333444457777788888888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHH
Q 048751 731 ESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYN----QVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
...++.+.+..|.++.++..++.++...|++++|.+.+.++.+.+.. +...+. .........+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888888888888888888888888888888888888877653 332221 1111123333333334455555
Q ss_pred HHCCC---CCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCc
Q 048751 807 LTQKL---LPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDS 883 (1004)
Q Consensus 807 ~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~ 883 (1004)
.+... ..+...+..+...+...|+.++|.+.+++.+++.++.....
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~------------------------------- 300 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS------------------------------- 300 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-------------------------------
Confidence 43311 12556666666777777777777777777766555432110
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H--HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHH
Q 048751 884 FIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-I--VTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVI 960 (1004)
Q Consensus 884 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~--~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 960 (1004)
............++.+++++.+++..+ ..|+ + ....++.+.+.+.|++++|.++++........|+...+.+++
T Consensus 301 -~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 301 -LPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred -hHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 001111111223444555555555554 2442 3 344455666666666666666666433334455555555666
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 048751 961 DAYRNANREDLADLACQEM 979 (1004)
Q Consensus 961 ~~~~~~g~~~~A~~~~~~m 979 (1004)
.++.+.|+.++|.+++++-
T Consensus 378 ~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 6666666666666666553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-11 Score=124.60 Aligned_cols=419 Identities=13% Similarity=0.049 Sum_probs=255.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVD-TITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDT-KTYNILL 403 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li 403 (1004)
...+-....-+.++|++++|+++|.+.++. .|| .+-|.....+|...|+|+++.+--...++. .|+. ..+.--.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA 190 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRA 190 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHH
Confidence 445666777888899999999999988875 577 677788888888889999888877777765 5553 4566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHh-CC--CCCCCCcHHHH
Q 048751 404 SLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIE--------MEK-CG--LHIDEHSVPGV 472 (1004)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~-~g--~~~~~~~~~~l 472 (1004)
+++-..|++++|+.= +|-.+++.++-...-.--+.++++. -.+ .+ +.|......+.
T Consensus 191 ~A~E~lg~~~eal~D-------------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy 257 (606)
T KOG0547|consen 191 SAHEQLGKFDEALFD-------------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY 257 (606)
T ss_pred HHHHhhccHHHHHHh-------------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 777777887777541 2222233333222222233333332 222 11 12222222222
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhcCCCC-----C------HHHHH
Q 048751 473 MKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAE-KGLWAEAETVFYGKRDLVGQKK-----S------VVEYN 540 (1004)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~-----~------~~~~~ 540 (1004)
...+...-.. .-.......+...-..+-..+.. ...+..|...+.+.....-..+ | ..+..
T Consensus 258 f~sF~~~~~~-------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 258 FGSFHADPKP-------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred Hhhccccccc-------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 2211110000 00000000000011111111111 1123444444333221111111 1 11222
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 541 VMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLG 620 (1004)
Q Consensus 541 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 620 (1004)
.....+.-.|+.-.|...|+..+.....++.. |--+..+|...++.++....|+...+.+ +-++.+|.--...+.-.+
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 22233455678888888888888876554432 6667777888888888888888888764 455666777777777778
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 621 QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYE 700 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 700 (1004)
++++|..-|++....+ +.++..|-.+.-+..+.+++++++..|++.++. .+.-+.+|+.....+...++++.|.+.|+
T Consensus 409 q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 8888888888887753 334677777777777888888888888888876 44556788888888888888888888888
Q ss_pred HHHhCCCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 701 KMKEMEGG-------PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 701 ~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
..++.... +.+.+-.+++..-.+ +++..|..++++..+.+|....+|..|+....++|+.++|+++|++...
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 87765432 111122222222222 7888888888888888888888888888888888888888888887654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.2e-11 Score=121.07 Aligned_cols=253 Identities=12% Similarity=0.053 Sum_probs=132.5
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHH
Q 048751 583 GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVE--PNEVVYGSLINGFAATGKVEEA 660 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A 660 (1004)
...+.+++..-.......|++-+...-+....+.....++++|+.+|+++.+.+.- .|..+|..++-. ++.+...+
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~skLs 316 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHHHH
Confidence 33345555555555555555444444444444455555666666666666654200 134555544422 22211111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048751 661 LQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREK 740 (1004)
Q Consensus 661 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (1004)
.-.-.-..-... -+.|...+.+-|.-.++.++|...|++..+.++. ...+|+.+..-|....+...|++-++.+.+.
T Consensus 317 ~LA~~v~~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 317 YLAQNVSNIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 000000000111 2234455555556666666666666666655443 4455666666666666666666666666666
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 048751 741 GQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKV 820 (1004)
Q Consensus 741 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 820 (1004)
+|.|-.+|..|+++|.-.+...-|+-.|++..+..+ -|...|.+|..+|.+.++.++|+..|.+....|-. +...+..
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~ 471 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVR 471 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHH
Confidence 666666666666666666666666666666665221 23556666666666666666666666666544322 3345555
Q ss_pred HHHHHHcCCCcHHHHHHHHhHh
Q 048751 821 LFTILKKGGFPIEAVKQLQSSY 842 (1004)
Q Consensus 821 l~~~~~~~g~~~~A~~~l~~~~ 842 (1004)
+.+.+.+.++..+|..+++..+
T Consensus 472 LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 5555665566666555555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-08 Score=110.99 Aligned_cols=124 Identities=14% Similarity=0.104 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHH
Q 048751 399 YNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAI-----LHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVM 473 (1004)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 473 (1004)
+-.+...|.++|-...|++.|.++..- +. .++...+ +-.+.-.-.++++.++++.|....+..+..+...+.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DI--KR-~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDI--KR-VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHH--HH-HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344556677778777787777665431 11 1111111 223444556788888888888888877777777777
Q ss_pred HHHHhcCCHHHHHHHHHHhhh------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048751 474 KMYINEGLLHQAKIIFKKCQL------------DGGLSSKTLAAIIDVYAEKGLWAEAETVFYG 525 (1004)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 525 (1004)
.-|+..=..+.-.++|+.... ....++.+....+.+.++.|++.+.+++.++
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 777776666666666665432 3356778888899999999999888887644
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-08 Score=106.91 Aligned_cols=531 Identities=11% Similarity=0.101 Sum_probs=305.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHH
Q 048751 397 KTYNILLSLYADVGNINAALRYYWKIREV-GLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKM 475 (1004)
Q Consensus 397 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 475 (1004)
..|...+....++|++-.-...|++.+.. -+.--...|...+.-....|-++-+..++++.++. ++......+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 45666666667777777777777766543 11122345666666666777777777777777654 33445666677
Q ss_pred HHhcCCHHHHHHHHHHhhh-------cCCCCHHHHHHHHHHHHhcCCHHHH---HHHHhhhhhhcCCCCCH--HHHHHHH
Q 048751 476 YINEGLLHQAKIIFKKCQL-------DGGLSSKTLAAIIDVYAEKGLWAEA---ETVFYGKRDLVGQKKSV--VEYNVMI 543 (1004)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~--~~~~~li 543 (1004)
++..+++++|.+.+..++. .++.+-..|..+.+...+.-+.-.. ..+++... +.-+|. ..|..|.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi---~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI---RRFTDQLGFLWCSLA 255 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc---ccCcHHHHHHHHHHH
Confidence 7777777777777766543 2234445666666666655443322 22232222 233333 3577777
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----------------CC------ChHHHHHHHHHHHhCC
Q 048751 544 KAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAG----------------GD------LMGQAVDLLAEMQGAG 601 (1004)
Q Consensus 544 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----------------~~------~~~~a~~~~~~m~~~g 601 (1004)
+.|.+.|.+++|..+|++....-. ...-|..+.+.|.. .+ +++-...-|+.+....
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 778888888888888777665422 22223333333321 11 1222333333333321
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 602 -----------FKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN------EVVYGSLINGFAATGKVEEALQYF 664 (1004)
Q Consensus 602 -----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~ 664 (1004)
-+-++..|..-+.. ..|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 02223333333322 246677777777777653 3332 245788888888999999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------------CHHHHHHHHHHHHHc
Q 048751 665 RMMRECGLWAN---QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGP-----------------DTVASNTMISLYAEL 724 (1004)
Q Consensus 665 ~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~ 724 (1004)
++..+...+.- ..+|..-...-.+..+++.|.++++........| +..+|...++..-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 98877544221 2355555566667788888888888765432211 334566667777778
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHH---cCCHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV-ISYNQVMACFAT---NGQLRQCG 800 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~ 800 (1004)
|-++....+|+++.+..-..+......+..+-...-++++.+++++-+..-..|+. ..|+..+..+.+ ..+.+.|.
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 88888999999998887777777777777777888888999999888776555663 467777666543 34788899
Q ss_pred HHHHHHHHCCCCCChhhHHHHH-HHH-HcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHh-hh--HhhhhHHHHHH
Q 048751 801 ELLHEMLTQKLLPDNGTFKVLF-TIL-KKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVG-LN--ALALGTCETLI 875 (1004)
Q Consensus 801 ~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~--~~A~~~~~~~~ 875 (1004)
.+|++.++ |++|...-+..++ ..+ .+-|.-..|+..++++-...++......+.....+.. .+ ..-.++|++++
T Consensus 571 dLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 99999887 6776544222222 111 2346666677777766555444333333332222111 11 12345566666
Q ss_pred hhhccCCch-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHH
Q 048751 876 KAEAYLDSF-IYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP--DIVTCINLVGCYGKAGLVEGVKRIH 941 (1004)
Q Consensus 876 ~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~l~~~~~~~g~~~~A~~~~ 941 (1004)
+.-+..+.. ..--....=++.|..+.|..+|.--.+. +.| +..-|...=.==.+.|+-+-.++++
T Consensus 650 e~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 650 ESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 553221111 1122223335566666666666544332 334 3444544444444666644444444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-11 Score=124.75 Aligned_cols=511 Identities=11% Similarity=0.021 Sum_probs=298.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 327 STYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLY 406 (1004)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 406 (1004)
.-+..+++-+..+.++..|.-+-++....+..|+. --.+.+++.-.|++..|..++..-.-. .-|..+.......+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHH
Confidence 44666777777788889998888888766544444 445778888888999888877654322 34777888888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHH
Q 048751 407 ADVGNINAALRYYWKIREVGLFPDSVTQRAI--LHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQ 484 (1004)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 484 (1004)
.+..++++|+.++..-.. .-+...|-.- ...+ ..+.+. ++ .+..........-...|......++
T Consensus 93 ~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~~~~l----~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHV---ETNPFSYYEKDAANTL----ELNSAG----ED--LMINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHhcccch---hhcchhhcchhhhcee----ccCccc----cc--ccccchhceeeeeeehhhhhccHHH
Confidence 888899999888763310 0011111000 0000 000000 00 0011111111222233444555666
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048751 485 AKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564 (1004)
Q Consensus 485 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 564 (1004)
|...+.+.+..+.....++..++....-.. ++-..+|... |... -.+
T Consensus 160 ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~--~Ee~~ll~~l--------~~a~---------~~~-------------- 206 (611)
T KOG1173|consen 160 ARDKYKEALLADAKCFEAFEKLVSAHMLTA--QEEFELLESL--------DLAM---------LTK-------------- 206 (611)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHhcch--hHHHHHHhcc--------cHHh---------hhh--------------
Confidence 666666654443333332222222111000 0001111000 0000 000
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 048751 565 LGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY 644 (1004)
Q Consensus 565 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 644 (1004)
-+......+.........-+.....-....-.+..-+......-.+-+...+++.+..++++...+.. +++...+
T Consensus 207 ----ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~ 281 (611)
T KOG1173|consen 207 ----EDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCL 281 (611)
T ss_pred ----hHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchH
Confidence 01111111111110000000000000001111234455555666667777888888888888887764 5666677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
..-|.++...|+..+-..+=..+.+.- +..+.+|-++.--|...|+..+|.+.|.+....+.. -...|-.++..|.-.
T Consensus 282 ~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 282 PLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhc
Confidence 777778888888777777777777653 345677888887777788888888888887765443 334677788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|..|+|...+..+.+..+.....+.-++.-|.+.++++-|.+.|.+.....+ .|+..++-+.-.....+.+.+|..+|+
T Consensus 360 ~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHH
Confidence 8888888888888777766655566666777788888888888888776432 356777777777777788888888887
Q ss_pred HHHHC--CCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCC
Q 048751 805 EMLTQ--KLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLD 882 (1004)
Q Consensus 805 ~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~ 882 (1004)
..+.. .+.+...++. +....++-.+.+++++++|+..+++.+... |.|
T Consensus 439 ~~l~~ik~~~~e~~~w~-----------------------------p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~ 488 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWE-----------------------------PTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKD 488 (611)
T ss_pred HHHHHhhhccccccchh-----------------------------HHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCc
Confidence 76421 0111110111 112233444566667777777777777775 458
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGC 927 (1004)
Q Consensus 883 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~ 927 (1004)
..++.+++..|...|+.+.|++.|.+.+. +.||..+...++..
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 89999999999999999999999999886 78987666666643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.6e-11 Score=120.52 Aligned_cols=355 Identities=14% Similarity=0.061 Sum_probs=241.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCC--CHHHHHHHHHHHH
Q 048751 470 PGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKK--SVVEYNVMIKAYG 547 (1004)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~ 547 (1004)
......+.+.|....|...|.......|-...+|..|...... .+.+..+-. +.+. ....---+..++-
T Consensus 168 YL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e~~~~l~~------~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 168 YLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IEILSILVV------GLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HHHHHHHHh------cCcccchHHHHHHHHHHHH
Confidence 3333444555666666666666666666666666665554432 111111110 0111 1111112344555
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHhHH
Q 048751 548 KSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGF--KPQCLTFSSVIAAYARLGQLSNA 625 (1004)
Q Consensus 548 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A 625 (1004)
...+.++++.-.+.....|..-+...-+....+.....++++|+.+|+++.+... -.|..+|+.++ |.+..+- .
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s--k 314 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS--K 314 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH--H
Confidence 5567788888888888877754444444445555677899999999999988631 13566777665 4433321 1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048751 626 VDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM 705 (1004)
Q Consensus 626 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 705 (1004)
+.++.+-.-.--+-...|..++.+-|.-.++.++|..+|++..+.+. .....|+.+..-|....+...|++-++.+++.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 22222211110123456777788888888999999999999988653 34567888888899999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 706 EGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQ 785 (1004)
Q Consensus 706 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 785 (1004)
.+. |-..|-.|.++|.-.+...-|+-+|++..+..|.|...|.+|+.+|.+.++.++|++.|.+....|- .+...+..
T Consensus 394 ~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~ 471 (559)
T KOG1155|consen 394 NPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVR 471 (559)
T ss_pred Cch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHH
Confidence 554 7789999999999999999999999999999999999999999999999999999999999988654 45688999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCCChh--hHHHHHHHHHcCCCcHHHHHHHHh
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQ----KLLPDNG--TFKVLFTILKKGGFPIEAVKQLQS 840 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~--~~~~l~~~~~~~g~~~~A~~~l~~ 840 (1004)
|...|-+.++..+|...|.+.++. |...+.. ....|..-+.+.++.++|..+...
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 999999999999999999887552 3332222 223344445667777776555444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-11 Score=135.05 Aligned_cols=283 Identities=13% Similarity=0.091 Sum_probs=198.5
Q ss_pred cCCHHHHHHHHhhhhhhcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHcCCChHH
Q 048751 513 KGLWAEAETVFYGKRDLVGQKKS-VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYN--SLVQMFAGGDLMGQ 589 (1004)
Q Consensus 513 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~ 589 (1004)
.|+++.|++......+ ..+. ...|-....+..+.|+++.|...+.++.+.. |+...+. .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~---~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD---HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHH
Confidence 5777777766665433 1112 2223333444477888888888888887643 4443222 33566778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 048751 590 AVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE-------VVYGSLINGFAATGKVEEALQ 662 (1004)
Q Consensus 590 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~ 662 (1004)
|...++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..+.. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888887765 556677788888888888888888888888876544322 123333443344445566666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048751 663 YFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQ 742 (1004)
Q Consensus 663 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (1004)
+++.+.+. .+.++.....+...+...|+.++|.+++++..+.. ++.... ++.+....++.+++.+..+...+..|
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 66665433 23567777888888888899999988888887743 344322 23333455888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 743 VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 743 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
.|+..+..++..+...|++++|.+.|+++.+. .|+..++..+...+.+.|+.++|.+++++...
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888888888999999999888888874 48888888888888888888888888887643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-11 Score=134.63 Aligned_cols=291 Identities=12% Similarity=0.064 Sum_probs=161.0
Q ss_pred HhcCCHHHHHHHHhhhhhhcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHH
Q 048751 511 AEKGLWAEAETVFYGKRDLVGQKKS-VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQ 589 (1004)
Q Consensus 511 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 589 (1004)
...|+++.|.+.+....+ ..|+ ...+-....++.+.|+++.|...+.+..+....+...........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 445666666666655443 2222 223333445556666677777766666553322222223333555566677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHH
Q 048751 590 AVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYG-SLIN---GFAATGKVEEALQYFR 665 (1004)
Q Consensus 590 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~---~~~~~g~~~~A~~~~~ 665 (1004)
|...++.+.+.. +-+..++..+...+.+.|++++|.++++.+.+.++. +...+. .-.. ++...+..+.+.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777666653 345556666666777777777777777777666532 222221 1111 1122222222333444
Q ss_pred HHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048751 666 MMRECGL---WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVAS-NTMISLYAELGMVTEAESMFNDIREKG 741 (1004)
Q Consensus 666 ~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 741 (1004)
.+.+... +.+...+..+...+...|+.++|.+++++..+..++.....+ ..........++.+.+.+.+++..+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4433221 125566666667777777777777777776665433221111 111112223456667777777777777
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 742 QVDA--VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 742 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
|.|+ ....+++..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776 6666777777777777777777774333223467666667777777777777777777765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-08 Score=108.99 Aligned_cols=580 Identities=17% Similarity=0.176 Sum_probs=314.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048751 332 LIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGN 411 (1004)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 411 (1004)
-|.+-..+..+.+|+.+++.+..+. .-..-|..+..-|...|+++.|.++|-+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3455666788999999999888763 233446777788999999999999997642 35567889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 412 INAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKK 491 (1004)
Q Consensus 412 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 491 (1004)
+++|.++-++.. |.......|-+-..-+-+.|++.+|.+++-.+.. | ...+.+|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p-----~~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----P-----DKAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----c-----hHHHHHHHhhCcchHHHHHHHH
Confidence 999998876653 3444566777777778889999999888754322 1 2457788888888888877766
Q ss_pred hhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH---------
Q 048751 492 CQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVM--------- 562 (1004)
Q Consensus 492 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m--------- 562 (1004)
... ..-..+...++.-|...|++..|+..|-+..+ |..-+.+|-..+.|++|.++-+.-
T Consensus 876 ~h~--d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v 943 (1636)
T KOG3616|consen 876 HHG--DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHV 943 (1636)
T ss_pred hCh--hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHH
Confidence 532 22345677788888889999999988876544 666677777777777777664321
Q ss_pred -----HHCCCCCCHHH------HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 048751 563 -----KNLGTWPDECT------YNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHE 631 (1004)
Q Consensus 563 -----~~~g~~p~~~t------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 631 (1004)
...|-..-... ...-+...+..+.++-|..+-+...+.. .|.+ ...+...+-..|++++|-+.|-+
T Consensus 944 ~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyve 1020 (1636)
T KOG3616|consen 944 AFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYVE 1020 (1636)
T ss_pred HHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhHH
Confidence 01110000000 1112233345556666666555544432 1222 22233345667888888877777
Q ss_pred HHHcCCCCCHHHHHHHH-----HHHHhcC-CHHHHHHHHHH---------HHHCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 048751 632 MRRAGVEPNEVVYGSLI-----NGFAATG-KVEEALQYFRM---------MRECGLWAN--QIVLTSLIKAYSKIGCLEG 694 (1004)
Q Consensus 632 m~~~g~~p~~~~~~~li-----~~~~~~g-~~~~A~~~~~~---------m~~~g~~~~--~~~~~~li~~~~~~g~~~~ 694 (1004)
..+.+ .-..||..-+ .-+.+.| ++++|.++|-. ..+... |+ +.++.--.......|++.+
T Consensus 1021 aikln--tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~-~~~l~dv~tgqar~aiee~d~~k 1097 (1636)
T KOG3616|consen 1021 AIKLN--TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC-EDLLADVLTGQARGAIEEGDFLK 1097 (1636)
T ss_pred Hhhcc--cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC-hhhhHHHHhhhhhccccccchhh
Confidence 66532 1112222111 1123333 45555544411 111111 12 1233333444455677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HHcCCCCHHHHHHHHHHHHhc
Q 048751 695 AKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDI----------------REKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
|..++-+.. +|+. .++.|...+.|..|+++.+.. .++|.--+..+..-+.-+-+.
T Consensus 1098 ae~fllran----kp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~ 1168 (1636)
T KOG3616|consen 1098 AEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQA 1168 (1636)
T ss_pred hhhheeecC----CCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhc
Confidence 766654433 3443 344556666777766665432 222333455566667777888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHcCCCcHHHHH
Q 048751 759 GMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDN--GTFKVLFTILKKGGFPIEAVK 836 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 836 (1004)
|+|.+|...+-+..+..- --..|+..| +++|-++.-+. +.|+. ........++...|..+.|.+
T Consensus 1169 gd~rkav~~~lkinrdst-----~nd~l~e~~-----~~kaadl~ikf----l~~d~nme~i~aa~~al~~~~~~e~aae 1234 (1636)
T KOG3616|consen 1169 GDWRKAVDALLKINRDST-----DNDALAEHC-----TEKAADLSIKF----LMGDENMEVIGAAGGALDEAGCHEAAAE 1234 (1636)
T ss_pred ccHHHHHHHHhhhccCCC-----CcHHHHHHH-----HHHHHhhhhhh----cCCccchhhHHhcchhhhcccccHHHHH
Confidence 888888877766533211 111222221 11222222111 12222 122222223333333333333
Q ss_pred HHHhHhhccCCchhhhHHHHHHHHH---------hhhHhhhhHHHHHHhhhccCCch---hHHHHHHHHHhcCChHHHHH
Q 048751 837 QLQSSYQEVKPYASEAIITSVYSVV---------GLNALALGTCETLIKAEAYLDSF---IYNVAIYAFKSSGKNDKALN 904 (1004)
Q Consensus 837 ~l~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~ 904 (1004)
++-..-. .+.-....+-+.-+.+. ...++..+.|++.++.....+.. -.-..+..+...++||+|++
T Consensus 1235 l~l~f~~-~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~id 1313 (1636)
T KOG3616|consen 1235 LLLLFDL-SKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAID 1313 (1636)
T ss_pred HHHHhhh-HHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHH
Confidence 3211000 00000000000000111 11223455666666654443332 24456788899999999987
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHcCCCCCc-HHHHHHH-HHHHHhcC-ChhHHHHHHHHH
Q 048751 905 TFMKMLDQGLEPDIVTCINLVGC-YGKAGLVEGVKRIHSQLKYGKMEPN-ENLFKAV-IDAYRNAN-REDLADLACQEM 979 (1004)
Q Consensus 905 ~~~~m~~~g~~pd~~t~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l-~~~~~~~g-~~~~A~~~~~~m 979 (1004)
... +++++|=..-|..+-.+ +.+.|+...|..++.+-- .+-+|. -.+|..+ -+.+.+-| +.++|..-+.++
T Consensus 1314 tak---~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~g-a~anpanfniyk~i~ed~lakpgt~~~eay~e~a~l 1388 (1636)
T KOG3616|consen 1314 TAK---KQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHG-APANPANFNIYKLIFEDMLAKPGTNCAEAYHEIADL 1388 (1636)
T ss_pred HHH---hcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhC-CCCCcccccHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 654 45678855555555433 568889888888877641 122332 3455533 34555554 445554433333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-14 Score=148.63 Aligned_cols=258 Identities=18% Similarity=0.177 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 048751 681 SLIKAYSKIGCLEGAKQVYEKMKEME-GGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG 759 (1004)
Q Consensus 681 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 759 (1004)
.+...+.+.|++++|.++++...... ...+...|..+.......++++.|+..++++...++.++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44566667777777777775443333 233445555566666677777777777777777766666666666666 5777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHcCCCcHHHHHHH
Q 048751 760 MLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQK-LLPDNGTFKVLFTILKKGGFPIEAVKQL 838 (1004)
Q Consensus 760 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~l 838 (1004)
++++|.+++++..+.. ++...+..++..+...++++++.++++++.... ..++...+......+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777665543 455556667777777777777777777765432 2344555556666666666666666666
Q ss_pred HhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-
Q 048751 839 QSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP- 916 (1004)
Q Consensus 839 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p- 916 (1004)
+++++..|.... ...++.++...|+.+++.+.++...+.. +.|+..|..++.+|...|+.++|+..|++..+ ..|
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~ 246 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPD 246 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc--cccc
Confidence 666665554332 2233334444455555445554444443 33555556666666666666666666666554 234
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 917 DIVTCINLVGCYGKAGLVEGVKRIHSQL 944 (1004)
Q Consensus 917 d~~t~~~l~~~~~~~g~~~~A~~~~~~~ 944 (1004)
|+.....+.+++...|+.++|.++.+++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4555555666666666666666555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-12 Score=139.08 Aligned_cols=283 Identities=15% Similarity=0.094 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048751 656 KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG--GPDTVASNTMISLYAELGMVTEAESM 733 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 733 (1004)
+..+|+..|..+... +.-+..+...+..+|...+++++|.++|+.+.+..+ --+..+|.+.+.-+-+ .-+---+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence 356788888775544 323446777788888888888888888888876543 2255667666654432 2222334
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048751 734 FNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR-DVISYNQVMACFATNGQLRQCGELLHEMLTQKLL 812 (1004)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 812 (1004)
-+.+.+..|..+.+|.+++++|.-+++.+.|++.|++.++. .| ...+|+-+..=+.....+|.|...|+..+ .
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~ 483 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----G 483 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh----c
Confidence 45566777888999999999999999999999999998873 46 47788888777888888999999998875 3
Q ss_pred CChhhHHH---HHHHHHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHH
Q 048751 813 PDNGTFKV---LFTILKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNV 888 (1004)
Q Consensus 813 p~~~~~~~---l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 888 (1004)
.|+..|++ +...|.+.++.+.|.-.++.+++..|.... ...++..+.+.|+.++|+.++++++..++ .|+-.-..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~ 562 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYH 562 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHH
Confidence 44444444 445678888888888888888887766544 34456778888888888888888888874 46666667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcH
Q 048751 889 AIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNE 953 (1004)
Q Consensus 889 l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 953 (1004)
.+..+...+++++|+..++++.+ +.|+ ...|..++..|.+.|+.+.|..-|..+. +++|-.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~--~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL--DLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh--cCCCcc
Confidence 78888888899999999998887 6784 5677778888888899988888887775 445543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=145.65 Aligned_cols=260 Identities=15% Similarity=0.180 Sum_probs=65.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 048751 506 IIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGD 585 (1004)
Q Consensus 506 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 585 (1004)
++.++.+.|++++|.+++.........+.+...|..+.......++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 344445555555555555332211101223333334444444455555555555555544322 23333344433 3455
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 586 LMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAG-VEPNEVVYGSLINGFAATGKVEEALQYF 664 (1004)
Q Consensus 586 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~ 664 (1004)
++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555444332 1333444444555555555555555555544321 1234444555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 048751 665 RMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD 744 (1004)
Q Consensus 665 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 744 (1004)
++..+..+ .|......++..+...|+.+++.+++....+.. +.+...+..+..+|...|+.++|..+|++.....|.|
T Consensus 170 ~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 170 RKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 55555421 134444455555555555555555554444432 1233344455555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 745 AVSFAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 745 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
+.....++.++...|+.++|..+.+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 555555555555555555555554443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.4e-08 Score=106.96 Aligned_cols=247 Identities=13% Similarity=0.169 Sum_probs=155.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 048751 173 NIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEV 252 (1004)
Q Consensus 173 ~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 252 (1004)
+.++.+++..|+++++.-+.. +.|..|| |-.+++...+ -..+.|.+....|.+. .|.....+.+++.+...
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~k---KvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~--~~~~~die~I~DlFme~ 555 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYAK---KVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQD--EEPLADIEQIVDLFMEL 555 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHHH---HcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhcc--CCCcccHHHHHHHHHHH
Confidence 346666777777777665533 3466665 4456666666 6788888888777765 44556677888888888
Q ss_pred CChhHHHHHHHHhcccccccccccccccc--cCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHH
Q 048751 253 GEFDSADRFYKDWCLGRLELDDLELDSTD--DLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYN 330 (1004)
Q Consensus 253 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 330 (1004)
.....+..++-+.+...-...+.....+. .+-..|......+.+.||-. .-+-
T Consensus 556 N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtH-------------------------yDra 610 (1666)
T KOG0985|consen 556 NLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTH-------------------------YDRA 610 (1666)
T ss_pred HhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhcccccc-------------------------ccHH
Confidence 88888888776654332111100000000 01112222222222222211 1267
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHH-----HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 331 TLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTM-----IYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSL 405 (1004)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-----l~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 405 (1004)
.+...|.++|-++.|++.+.++.+. + ..+..+.+ +..+...-.++.+.+.++.|+..++..|..+...+..-
T Consensus 611 ~IAqLCEKAGL~qraLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 611 EIAQLCEKAGLLQRALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHhcchHHHHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 7888999999999999988887542 1 11111111 22334455789999999999998888888877777777
Q ss_pred HHhcCCHHHHHHHHHHHHHc-----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 406 YADVGNINAALRYYWKIREV-----------GLFPDSVTQRAILHILCQRNMVQEAEAVIIE 456 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~-----------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (1004)
|+..=-.+.-+++|+..+.. ++.-|..+.-..|++-|+.|.+.+..++.++
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 77766667777777766542 2445666666788999999999988887654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-08 Score=105.50 Aligned_cols=603 Identities=12% Similarity=0.071 Sum_probs=304.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYA 407 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 407 (1004)
.|..++..| ..+++...++..+.+++. ..-...|.....-.+...|+-++|....+......+. +.++|..+.-.+-
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHh
Confidence 344444443 455666666666666653 1112233333333344566777777766666654333 4566666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHH
Q 048751 408 DVGNINAALRYYWKIREVGLFPD-SVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAK 486 (1004)
Q Consensus 408 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 486 (1004)
...++++|+++|+..... .|| ...|.-+.-.-.+.++++.. .
T Consensus 87 ~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~-----------------------------------~ 129 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGY-----------------------------------L 129 (700)
T ss_pred hhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhH-----------------------------------H
Confidence 666677777777666653 233 23344333333344444444 4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHH------HHHHcCCChhHHHHHHH
Q 048751 487 IIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMI------KAYGKSKLYDKAFSLFK 560 (1004)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li------~~~~~~g~~~~A~~l~~ 560 (1004)
....+.+...+.....|..++..+.-.|....|..+.+.........++...|.... ....+.|..++|++.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 444444444444444555555555555666666655555444322234444433222 22445677777777665
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHhHHH-HHHHHHHHcCC
Q 048751 561 VMKNLGTWPDECTY-NSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVI-AAYARLGQLSNAV-DLFHEMRRAGV 637 (1004)
Q Consensus 561 ~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~ 637 (1004)
.-... + .|...+ ..-...+.+.+++++|..++..++.. .||...|.... .++.+-.+.-+++ .+|....+.
T Consensus 210 ~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-- 283 (700)
T KOG1156|consen 210 DNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-- 283 (700)
T ss_pred hhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--
Confidence 54432 1 122222 23344556777788888888777765 35555554433 3333333333333 555555442
Q ss_pred CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCC------
Q 048751 638 EPNEVVYGSL-INGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMK----EME------ 706 (1004)
Q Consensus 638 ~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~------ 706 (1004)
.|....-..+ ++.+....-.+..-+++..+.+.|+++- +..+...|-.....+-..++.-.+. ..+
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 1211111111 1111112223344456666677776432 3333333322211111111111111 110
Q ss_pred ----CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048751 707 ----GGPDTVAS--NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV 780 (1004)
Q Consensus 707 ----~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 780 (1004)
-+|....| ..++..+-..|+++.|..+++......|.-+..|..-+.++...|++++|..++++..+.+. +|.
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR 439 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADR 439 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhH
Confidence 13444444 34566677888888888888888887777777888888888888888888888888877554 555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CChhh----HHH--HHHHHHcCCCcHHHHHHHHhHhhccCCchhhh
Q 048751 781 ISYNQVMACFATNGQLRQCGELLHEMLTQKLL--PDNGT----FKV--LFTILKKGGFPIEAVKQLQSSYQEVKPYASEA 852 (1004)
Q Consensus 781 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~----~~~--l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 852 (1004)
..-...+.-..++++.++|.++.....+.|.. .+..- |-. -..+|.+.|++.+|++-+..+..-...+....
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dq 519 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQ 519 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Confidence 54445666667788888888888887666541 11111 111 12356677777777766655544332222111
Q ss_pred H--------------HHHHHHHHhh----------hHhhhhHHHHHHhhhccCC---chhHHHH----HHHHHhc-CChH
Q 048751 853 I--------------ITSVYSVVGL----------NALALGTCETLIKAEAYLD---SFIYNVA----IYAFKSS-GKND 900 (1004)
Q Consensus 853 ~--------------~~~l~~~~~~----------~~~A~~~~~~~~~~~~~~~---~~~~~~l----~~~~~~~-g~~~ 900 (1004)
. +..++...+. ...|+++|-++.+.- ... ..-...+ -....+. ....
T Consensus 520 fDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p-~~~~~~~~~~~~ms~e~kk~~~k~rk~~k 598 (700)
T KOG1156|consen 520 FDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSP-NMYTNKADEIEKMSDEEKKIKKKQRKAKK 598 (700)
T ss_pred hhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCc-ccccccchhhhhccHHHHHHHHHHHHHHH
Confidence 0 0001100000 012555555555441 000 0001111 1111111 1122
Q ss_pred HHHHHHHHHHH---------CC--CCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 048751 901 KALNTFMKMLD---------QG--LEPDIVTCINLVGCYGKAGL-VEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANR 968 (1004)
Q Consensus 901 ~A~~~~~~m~~---------~g--~~pd~~t~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 968 (1004)
+|...-..+.+ .| ++||.. .+...+.+..+ .++|.+++..+... ..-...+|-.-...|.+.|.
T Consensus 599 k~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~-~~~~~~~~iL~~ely~rk~k 674 (700)
T KOG1156|consen 599 KAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHK-GKEKGETYILSFELYYRKGK 674 (700)
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHh-cccchhhhhhhHHHHHHHHH
Confidence 22222222221 12 234444 33344444444 47888888777533 23335556555678899999
Q ss_pred hhHHHHHHHHHHhhcCC
Q 048751 969 EDLADLACQEMRTAFES 985 (1004)
Q Consensus 969 ~~~A~~~~~~m~~~~~~ 985 (1004)
...|....++......+
T Consensus 675 ~~l~~~~~~~~~~~~~~ 691 (700)
T KOG1156|consen 675 FLLALACLNNAEGIHGT 691 (700)
T ss_pred HHHHHHHHHhhhhhcCC
Confidence 99999998888765544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-10 Score=113.88 Aligned_cols=291 Identities=13% Similarity=0.132 Sum_probs=233.4
Q ss_pred cCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 048751 513 KGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVD 592 (1004)
Q Consensus 513 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 592 (1004)
.|++..|++...+..+. .+.....|-.-..+..+.|+.+.+-.++.+.-+.-..++...+-+........|++..|..
T Consensus 97 eG~~~qAEkl~~rnae~--~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH--GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhc--CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 68888888888776552 3333555666677788889999999999998886445666677777888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 593 LLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE-------VVYGSLINGFAATGKVEEALQYFR 665 (1004)
Q Consensus 593 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~ 665 (1004)
-+..+.+.+ +-..........+|.+.|++.....++..+.+.|+-.+. .+|+.++.-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999988875 556777888899999999999999999999998876654 356777776666666666666777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 048751 666 MMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDA 745 (1004)
Q Consensus 666 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (1004)
..... .+.++..-..++.-+.+.|+.++|.++..+..+.+.+|... ..-.+.+-++...-++..++.....|.++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 66543 44567777888889999999999999999999888776622 22235567888888888888888889999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLP 813 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 813 (1004)
..+.+|+..|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++....-..|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999988884 4999999999999999999999999998876443333
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=133.15 Aligned_cols=203 Identities=15% Similarity=0.109 Sum_probs=161.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 603 KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEP-NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTS 681 (1004)
Q Consensus 603 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 681 (1004)
+-.+.+|.++.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+.... -+-..|.-
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYG 494 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYG 494 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHh
Confidence 456778888888888888888888888888875 45 577888888888888888888888888876422 23335556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
+...|.+.++++.|.-.|+++.+.++. +.+....+...+.+.|+.|+|+.+++++...+|.|+..-...+..+...+++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 677788888888898888888876654 5556667778888889999999999998888888888888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048751 762 DEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKL 811 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 811 (1004)
++|+..++++++ +.|+ ...+..+...|-+.|+.+.|+.-|.-+.+...
T Consensus 574 ~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 574 VEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 999999999888 4465 66778888888889999988888888765433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-10 Score=113.89 Aligned_cols=253 Identities=15% Similarity=0.141 Sum_probs=176.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHH
Q 048751 585 DLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE------VVYGSLINGFAATGKVE 658 (1004)
Q Consensus 585 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~ 658 (1004)
++.++|.++|-+|.+.. +.+..+--+|.+.|.+.|..+.|+++.+.+.+. ||. .....|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 45556666666665532 333444456667777777777777777776652 432 23445666777788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHH
Q 048751 659 EALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTV----ASNTMISLYAELGMVTEAESMF 734 (1004)
Q Consensus 659 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~ 734 (1004)
.|+++|..+.+.+. --......|+..|-...+|++|+++-+++.+.+..+... .|.-|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 88888888877543 344567778888888888888888888887776654432 3445556666678899999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 048751 735 NDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPD 814 (1004)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 814 (1004)
.+..+.+|.++.+-..++..+...|+++.|++.++...+.+..--..+...|..+|.+.|+.++...++.++++... .
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g 281 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G 281 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence 99999999999888999999999999999999999999876333366788899999999999999999999876533 3
Q ss_pred hhhHHHHHHHHHcCCCcHHHHHHHHhHhhc
Q 048751 815 NGTFKVLFTILKKGGFPIEAVKQLQSSYQE 844 (1004)
Q Consensus 815 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 844 (1004)
...-..+........-.+.|..++.+.+..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 333333333333333345555555444443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-07 Score=97.63 Aligned_cols=272 Identities=10% Similarity=0.124 Sum_probs=145.6
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 048751 532 QKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWP------DECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQ 605 (1004)
Q Consensus 532 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 605 (1004)
.+.++..|..-+.. ..|+..+-+..|.+..+. +.| -...|..+.+.|-..|+++.|..+|++..+...+--
T Consensus 345 n~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 345 NPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred CCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 44455556554443 345566666666666543 112 123456666777777788888888877776432211
Q ss_pred ---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 606 ---CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVE-----------------PNEVVYGSLINGFAATGKVEEALQYFR 665 (1004)
Q Consensus 606 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------------p~~~~~~~li~~~~~~g~~~~A~~~~~ 665 (1004)
..+|..-...-.+..+++.|+++++.....--. .+...|..+++.....|-++....+++
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 234444444455566777777777665432100 122345555665566667777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHc---CCHHHHHHHHHHHHHcC
Q 048751 666 MMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTV-ASNTMISLYAEL---GMVTEAESMFNDIREKG 741 (1004)
Q Consensus 666 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 741 (1004)
.+++..+ .++.........+-....++++.+++++-+..-..|++. .|+..+.-+.+. ...+.|+.+|++..+..
T Consensus 502 riidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C 580 (835)
T KOG2047|consen 502 RIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC 580 (835)
T ss_pred HHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 7777655 344333333344445556677777777655543344443 555555544432 24677777777777754
Q ss_pred CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 742 QVDAV--SFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 742 ~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
||... .|...+..--+.|-...|+.+++++-.. +.+. ...||..|.--+..=-+.....+|++.++
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 43222 2333333344456667777777775442 2232 34556555433322222233444444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-09 Score=115.48 Aligned_cols=466 Identities=13% Similarity=0.065 Sum_probs=260.3
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHH
Q 048751 476 YINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKA 555 (1004)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 555 (1004)
+...+++..++++.+.++...+....+....+-.+...|+.++|......... +...+.+.|..+.-.+....++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHH
Confidence 34566777777777777777777777777777777777777777776655443 2555566677766666666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 048751 556 FSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA 635 (1004)
Q Consensus 556 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 635 (1004)
++.|......+.. |...+.-+.-.-++.++ ++.......+..+.
T Consensus 95 iKcy~nAl~~~~d-N~qilrDlslLQ~QmRd-----------------------------------~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 95 IKCYRNALKIEKD-NLQILRDLSLLQIQMRD-----------------------------------YEGYLETRNQLLQL 138 (700)
T ss_pred HHHHHHHHhcCCC-cHHHHHHHHHHHHHHHh-----------------------------------hhhHHHHHHHHHHh
Confidence 7777776664422 33333333322233333 33333333333322
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhCCCC
Q 048751 636 GVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECG-LWANQIVLTSLI------KAYSKIGCLEGAKQVYEKMKEMEGG 708 (1004)
Q Consensus 636 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~ 708 (1004)
. +.....|..++.++.-.|+...|..+++...+.. -.|+...+.... ....+.|..++|.+.+..-... +.
T Consensus 139 ~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~ 216 (700)
T KOG1156|consen 139 R-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV 216 (700)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH
Confidence 1 1223444445555555555555555555544332 123333322211 2234556666666655543321 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHH
Q 048751 709 PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAI-DAAEEMKLSGLLRDVISYNQVM 787 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~l~ 787 (1004)
-....-..-.+.+.+.+++++|..++..+...+|.+...|..+..++.+-.+.-+++ .+|....+.- |-...-..+-
T Consensus 217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlp 294 (700)
T KOG1156|consen 217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLP 294 (700)
T ss_pred HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhcc
Confidence 122222344566777888888888888888888888777777777776333333444 5555554421 2111111111
Q ss_pred HHHHH-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhcc----------CCchhhhHHHH
Q 048751 788 ACFAT-NGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEV----------KPYASEAIITS 856 (1004)
Q Consensus 788 ~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----------~~~~~~~~~~~ 856 (1004)
-.... ..-.+..-.++..+++.|+++-...+..+..-=.+..-.++-+.-+...+... .+++...+|..
T Consensus 295 lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 295 LSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred HHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 11111 12222334455666777776654444444322111111111111222222111 12344455544
Q ss_pred H-----HHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048751 857 V-----YSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKA 931 (1004)
Q Consensus 857 l-----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~ 931 (1004)
. +...|+++.|.+..+.++...|. -+.-|..-++.+.+.|..++|...+++..+.. .||...-..-+.-..++
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 3 46788888899999888877421 23345666789999999999999999988732 24655555666667789
Q ss_pred CChhHHHHHHHHHHcCCCCC--c----HHHHHHH--HHHHHhcCChhHHHHHHHHHHhhcCC
Q 048751 932 GLVEGVKRIHSQLKYGKMEP--N----ENLFKAV--IDAYRNANREDLADLACQEMRTAFES 985 (1004)
Q Consensus 932 g~~~~A~~~~~~~~~~~~~p--~----~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~~~~~ 985 (1004)
.+.++|.+++......+... + .-+|-.+ +.+|.+.|++-+|.+=+..+...+..
T Consensus 453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~ 514 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKT 514 (700)
T ss_pred cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999998887655311 1 1234333 56888999998888887777766643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-10 Score=113.35 Aligned_cols=286 Identities=16% Similarity=0.182 Sum_probs=194.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHH
Q 048751 654 TGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD---TVASNTMISLYAELGMVTEA 730 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 730 (1004)
.++.++|..+|-+|.+... .+..+--+|.+.|.+.|..+.|+++.+.+.+..--+. ..+...|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4677889999998887532 3444566788888889999999999888876422111 12344566777888888888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 731 ESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVI----SYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
+.+|..+.+.+..-..+...|+..|....+|++|++..+++.+.+..+..+ -|.-|...+....+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~---------- 196 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV---------- 196 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH----------
Confidence 888888887766677778888888888888888888888888766444322 223333333333344
Q ss_pred HHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchh
Q 048751 807 LTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFI 885 (1004)
Q Consensus 807 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 885 (1004)
+.|...+.++++..|.-.. ..+++.+....|++..|++.++.+++.++.--+.+
T Consensus 197 -------------------------d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 197 -------------------------DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred -------------------------HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 4455555555555544433 34556777788888888888888888876656677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 048751 886 YNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYG-KAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYR 964 (1004)
Q Consensus 886 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 964 (1004)
...|..+|.+.|+.++.+..+.++.+. .++......+..... ..|.-+....+.+++. -.|+...+..|++.-.
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhh
Confidence 889999999999999999999999874 444444444444433 3444444444456664 3699988888887654
Q ss_pred h---cCChhHHHHHHHHHH
Q 048751 965 N---ANREDLADLACQEMR 980 (1004)
Q Consensus 965 ~---~g~~~~A~~~~~~m~ 980 (1004)
. .|+..+-..++++|.
T Consensus 327 ~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred ccccccchhhhHHHHHHHH
Confidence 3 345566666666665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-08 Score=109.80 Aligned_cols=633 Identities=12% Similarity=0.030 Sum_probs=368.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 048751 323 PRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRIS-PDTKTYNI 401 (1004)
Q Consensus 323 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~ 401 (1004)
|.-...|..|...|+...+...|.+.|+..-+.+. .|..........|+...+++.|..+.-..-+.... .-...|.-
T Consensus 489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~ 567 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ 567 (1238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh
Confidence 34456788899999888888899999988877642 25556777888899999999998884333222100 01123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCC
Q 048751 402 LLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGL 481 (1004)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 481 (1004)
..-.|.+.++..+|+.-|+...+..+ .|...|..+..+|...|++..|.++|.+....... +.........+.+..|.
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGK 645 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhh
Confidence 55567788889999998888887543 36778889999999999999999999887654321 22223344456678899
Q ss_pred HHHHHHHHHHhhhcCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCC----
Q 048751 482 LHQAKIIFKKCQLDGGLS-------SKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSK---- 550 (1004)
Q Consensus 482 ~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 550 (1004)
+.+|...+.........- ..++..++..+...|-...|...|+...+. ..+.++...+...
T Consensus 646 Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~--------f~~~l~h~~~~~~~~Wi 717 (1238)
T KOG1127|consen 646 YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES--------FIVSLIHSLQSDRLQWI 717 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH--------HHHHHHHhhhhhHHHHH
Confidence 999988888776544332 334445555555556556666666554331 0111111111000
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh---H---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c-
Q 048751 551 LYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLM---G---QAVDLLAEMQGAGFKPQCLTFSSVIAAYAR----L- 619 (1004)
Q Consensus 551 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~- 619 (1004)
-...|..+|-+.. .. .|+.....++..-.-..+.. + -+.+.+-.-++ +..+..+|..++..|.+ .
T Consensus 718 ~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 718 VASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred HHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcC
Confidence 0123444444433 11 24443333333323333322 1 12222222221 12334556666555554 1
Q ss_pred ---CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 620 ---GQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAK 696 (1004)
Q Consensus 620 ---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 696 (1004)
.+...|+..++...+.. ..+..+|+.|.-. ...|++.-|...|-....... ....+|..+.-.+.+..+++.|.
T Consensus 794 et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred CcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHHhh
Confidence 22346777777776642 4467788877655 666888888888877766533 46678888888889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 697 QVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIRE--KG---QVDAVSFAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
..|...+...+. +...|-.........|+.-++..+|..-.+ .+ -+....|.+........|++++-+...+++
T Consensus 871 ~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 871 PAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 999998876543 556666666666678888899998887332 22 345556666666677777777666554443
Q ss_pred HH---------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCChhhHH----HHHHHHHcCCCcHHHHHH
Q 048751 772 KL---------SGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ-KLLPDNGTFK----VLFTILKKGGFPIEAVKQ 837 (1004)
Q Consensus 772 ~~---------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~A~~~ 837 (1004)
-. .+.+.+...|...+....+.+.+.+|..+..+.+.- -..-+..+|+ .+.+.+...|..+.|...
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 21 123234678888888888889998888888876321 0112222333 333344555666655433
Q ss_pred HHhHhhccCCchhhhHHHHHH--HHHhhhHhhhhHHHHHHhhhc-cCC-chhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048751 838 LQSSYQEVKPYASEAIITSVY--SVVGLNALALGTCETLIKAEA-YLD-SFIYNVAIYAFKSSGKNDKALNTFMKMLDQG 913 (1004)
Q Consensus 838 l~~~~~~~~~~~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 913 (1004)
......+ ....+.+.-+ ...++++++++.|++++...- ..| ++....++.+...++..+.|...+-+....
T Consensus 1030 ~~~~~~e----vdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l- 1104 (1238)
T KOG1127|consen 1030 SWKEWME----VDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL- 1104 (1238)
T ss_pred hcccchh----HHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-
Confidence 3221111 1112222222 347888999999999987632 222 244566677777888888998877666653
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHH---HHHHHHHhcCChhHHHHHHHHHH
Q 048751 914 LEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFK---AVIDAYRNANREDLADLACQEMR 980 (1004)
Q Consensus 914 ~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~ 980 (1004)
-.|+......|...+.-..+-..-..+.+.+.+.. ......|. ..-.+|.+.||-......+++..
T Consensus 1105 s~~~~~sll~L~A~~ild~da~~ssaileel~kl~-k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~ 1173 (1238)
T KOG1127|consen 1105 SKVQASSLLPLPAVYILDADAHGSSAILEELEKLL-KLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAV 1173 (1238)
T ss_pred CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhh-hhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 23343333333322222222121122222222110 01111221 11235677888888888877754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-08 Score=100.81 Aligned_cols=448 Identities=11% Similarity=0.055 Sum_probs=265.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048751 333 IDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNI 412 (1004)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 412 (1004)
+.-+....++..|+.+++--...+-+-...+-..+..++.+.|++++|...+..+.+.. .|+...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 45566678999999988776644333223344456678889999999999999887643 56667777777777778999
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 413 NAALRYYWKIREVGLFPDSV-TQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKK 491 (1004)
Q Consensus 413 ~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 491 (1004)
.+|..+-... |+.. .-..|...--+.|+-++-..+.+.+...- .--.++.......-.+.+|+.++++
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9998876554 3433 34445555557777777776666655321 1122344444455578888888888
Q ss_pred hhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 048751 492 CQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDE 571 (1004)
Q Consensus 492 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 571 (1004)
++.+++.-...-..++-+|.+..-++-+.+++.--... .+.+....|.......+.=.-..|..-.+++.+.+-..
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 88877766666667777888888888777777665552 33344455544444333222223333344444432211
Q ss_pred HHHHHHHHHHHcC-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 048751 572 CTYNSLVQMFAGG-----DLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGS 646 (1004)
Q Consensus 572 ~t~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 646 (1004)
| ..+.-+++. .+-+.|++++-.+.+. .|. .--.|+--|.+.+++++|..+.+++.-. .|-......
T Consensus 253 --~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKg 323 (557)
T KOG3785|consen 253 --Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKG 323 (557)
T ss_pred --c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHH
Confidence 1 112222222 3445666666655542 232 2334555677888888888887766421 232222222
Q ss_pred HHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 647 LING-----FAATGKVEEALQYFRMMRECGLWANQI-VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 647 li~~-----~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
+..+ ........-|.+.|+..-+.+..-|.. .-.++...+.-..++++.+..+..+..--...|...+ .+..+
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHH
Confidence 2221 111122455666666554444333322 2334455555566777877777776654333344444 46778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSF-AAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYN-QVMACFATNGQLRQ 798 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~ 798 (1004)
++..|.+.+|+++|-++....-.|..+| ..|+.+|...++.+-|+.++-++.. ..+..+.. .+..-|.+.+++--
T Consensus 403 k~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877765553344444 5567788888888888776655432 12333333 34456777787777
Q ss_pred HHHHHHHHHHC
Q 048751 799 CGELLHEMLTQ 809 (1004)
Q Consensus 799 A~~~~~~~~~~ 809 (1004)
|.+.|+.+...
T Consensus 480 aaKAFd~lE~l 490 (557)
T KOG3785|consen 480 AAKAFDELEIL 490 (557)
T ss_pred HHHhhhHHHcc
Confidence 77777776543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.5e-10 Score=112.87 Aligned_cols=284 Identities=15% Similarity=0.108 Sum_probs=163.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048751 654 TGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESM 733 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 733 (1004)
.|++..|+++..+..+.+-.| ...|..-+.+--+.|+.+.+-..+.++.+...+++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577888888887777665432 3345556666777888888888888887765566666777777778888888888888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 734 FNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVI-------SYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
.+++.+..|.++........+|.+.|++.+...++.++.+.|...|.. +|..+++-....+..+.-...|++.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 888888888888888888888888888888888888888877655532 3444444333333333333344433
Q ss_pred HHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhH
Q 048751 807 LTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIY 886 (1004)
Q Consensus 807 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 886 (1004)
... ...++.....++.-+..+|..++|.+.+++ .++...++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~---------------------------------~Lk~~~D~~---- 297 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIED---------------------------------ALKRQWDPR---- 297 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHH---------------------------------HHHhccChh----
Confidence 211 222333333333334444444444444444 444432222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 048751 887 NVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRN 965 (1004)
Q Consensus 887 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 965 (1004)
-.....+.+-++...=++..+.-.+. .| ++-.+.+|...|.+.+.+.+|..+++... ...|+...|..+.+++.+
T Consensus 298 L~~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~ 373 (400)
T COG3071 298 LCRLIPRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQ 373 (400)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHH
Confidence 11111223334444444444433331 22 23445555555555555555555555443 334555555555555555
Q ss_pred cCChhHHHHHHHHHH
Q 048751 966 ANREDLADLACQEMR 980 (1004)
Q Consensus 966 ~g~~~~A~~~~~~m~ 980 (1004)
.|+.++|.++.++..
T Consensus 374 ~g~~~~A~~~r~e~L 388 (400)
T COG3071 374 LGEPEEAEQVRREAL 388 (400)
T ss_pred cCChHHHHHHHHHHH
Confidence 555555555555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-07 Score=99.90 Aligned_cols=375 Identities=13% Similarity=0.154 Sum_probs=197.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHH
Q 048751 405 LYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQ 484 (1004)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 484 (1004)
.+...|+++.|+.-|-+... .-..|.+-.....+.+|+.+++.+..... ...-|..+.+.|...|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence 34455666666555533321 12234445566778888888887776543 23456677788888888888
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048751 485 AKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564 (1004)
Q Consensus 485 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 564 (1004)
|.++|.+. ..++..+.+|.+.|+|++|.++-.+. .|+...+..|-+-..-+-+.|++.+|.++|-....
T Consensus 784 ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~ 852 (1636)
T KOG3616|consen 784 AEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE 852 (1636)
T ss_pred HHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC
Confidence 88888664 23566778888888888888776654 23555556666666667777777777777644332
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 048751 565 LGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY 644 (1004)
Q Consensus 565 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 644 (1004)
|+ ..|.+|-+.|..+..+++.++--.. .-..|...+..-|-..|++..|...|-+..+ |
T Consensus 853 ----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~ 911 (1636)
T KOG3616|consen 853 ----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------F 911 (1636)
T ss_pred ----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------H
Confidence 33 2456666677776666665543211 1112334445555666666666665544332 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH------------HHCCCCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 645 GSLINGFAATGKVEEALQYFRMM------------RECGLWANQI--------VLTSLIKAYSKIGCLEGAKQVYEKMKE 704 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m------------~~~g~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~~~~ 704 (1004)
..-++.|-..+-+++|..+-+.- -...+.-+.. .+..-++..+..+.++-|.++-+...+
T Consensus 912 kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k 991 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK 991 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh
Confidence 33344444444444444332210 0000000100 111222333445555666655554443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH------------------HHHHHHHhcCCHHHHHH
Q 048751 705 MEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFA------------------AMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 705 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------~l~~~~~~~g~~~~A~~ 766 (1004)
.. .+.+. ..+...+-..|++++|.+.|-...+.+..++.-.. ..+.++...++|..|.+
T Consensus 992 ~k-~~~vh--lk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aer 1068 (1636)
T KOG3616|consen 992 DK-MGEVH--LKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAER 1068 (1636)
T ss_pred cc-Cccch--hHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHH
Confidence 22 12222 23444566778888888888777776532221100 11223444444444444
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHH
Q 048751 767 AAEEMKLSGLLRD--VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQ 839 (1004)
Q Consensus 767 ~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~ 839 (1004)
+.+.- .|| +..|..-.+.....|++.+|..++-+.. .|+. .+.-+..++.+.+|++..+
T Consensus 1069 vae~h-----~~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~i-----~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1069 VAEAH-----CEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred HHHhh-----ChhhhHHHHhhhhhccccccchhhhhhheeecC----CCch-----HHHHHHHhccChHHHHHHH
Confidence 33321 133 2344455555566677777666554432 3432 2333445555666555444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-09 Score=118.12 Aligned_cols=581 Identities=14% Similarity=0.012 Sum_probs=339.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048751 375 GNLSEAEALFCMMEESRISPD-TKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAV 453 (1004)
Q Consensus 375 g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 453 (1004)
.+...|...|-+..+. .|+ ...|..|...|+..-+...|.++|+...+... -|...+......|....+++.|..+
T Consensus 472 K~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHH
Confidence 3466677776666654 333 36789999999998899999999999988432 2466788899999999999999988
Q ss_pred HHHHHhCC-CCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCC
Q 048751 454 IIEMEKCG-LHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQ 532 (1004)
Q Consensus 454 ~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 532 (1004)
.-..-+.. ...-...+....-.|.+.++..+|...|+..+...|.+...|..++.+|.++|++..|.++|.++... .
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 44332221 11112233345556788899999999999999999999999999999999999999999999887663 2
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh-------
Q 048751 533 KKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLG------TWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQG------- 599 (1004)
Q Consensus 533 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~------- 599 (1004)
+.+...-.-.....+..|++.+|+..+....... ..--..++..+...+...|-...+..+++.-++
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 2222222223344678899999999988775431 111122333333333344444445444444332
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCC
Q 048751 600 AGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKV---E---EALQYFRMMRECGLW 673 (1004)
Q Consensus 600 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~~g~~ 673 (1004)
.....+...|-.+ .+|..+|-... .. .|+......+..-+...+.. + -+.+.+-.-.. ..
T Consensus 707 h~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~ 772 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LA 772 (1238)
T ss_pred HhhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hh
Confidence 1111222222222 22333333333 11 23333333333322222222 1 11111111111 11
Q ss_pred CCHHHHHHHHHHHHH-------cC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 048751 674 ANQIVLTSLIKAYSK-------IG-CLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDA 745 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~-------~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (1004)
.+..+|..++..|.+ .+ +...|+..+...++..- .+...|++|.-. ...|++.-|.-.|-+.....|.+.
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~ 850 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCH 850 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccch
Confidence 224445555544433 12 22467777777766443 366777777655 666788888888888887778888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCCChhhHHHH
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEM----LTQKLLPDNGTFKVL 821 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~~~l 821 (1004)
.+|..+.-.+.+..+++-|...|.......+ .|...|..........|+.-++..+|..- ...|-.|+..-+...
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 8999999999999999999999988887442 34667776666667788888888888762 223444554444444
Q ss_pred HHHHHcCCCcHHHHHHHH----------hHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhh-hccCCchhHH--
Q 048751 822 FTILKKGGFPIEAVKQLQ----------SSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKA-EAYLDSFIYN-- 887 (1004)
Q Consensus 822 ~~~~~~~g~~~~A~~~l~----------~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~-- 887 (1004)
......+|+.++-+...+ ..+.+.|.... ....+.+....+.+.+|.+.+.+++.. ....+...||
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 444455565544433222 22223333322 233345566677777777777665432 1123444455
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcC-CCCCc-HHHHHHHHHHH
Q 048751 888 --VAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYG-KMEPN-ENLFKAVIDAY 963 (1004)
Q Consensus 888 --~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~ 963 (1004)
.+++.++..|+++.|...+...-. +-|...-..-+.. .-.++++++.+.|+++... +-+.+ +.....++.+.
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~ 1085 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCM 1085 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHH
Confidence 344556666777655444432211 1122222222222 2356777788888776532 11222 23445555566
Q ss_pred HhcCChhHHHHHHHHHHh
Q 048751 964 RNANREDLADLACQEMRT 981 (1004)
Q Consensus 964 ~~~g~~~~A~~~~~~m~~ 981 (1004)
...|..+.|...+-+...
T Consensus 1086 g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1086 GLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hhcccchHHHHHHHHHHH
Confidence 666777777665554443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-08 Score=110.96 Aligned_cols=438 Identities=14% Similarity=0.046 Sum_probs=199.8
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 324 RLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILL 403 (1004)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 403 (1004)
+++..|..|.-++...|+++.+.+.|++....- .-....|+.+...+...|.-..|..+++.-.....+|+..+--.++
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 346677777777888888888888888776532 2245567777777777777778888887766543334433322222
Q ss_pred -HHHH-hcCCHHHHHHHHHHHHHc--CCC--CCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhCCCCCCC
Q 048751 404 -SLYA-DVGNINAALRYYWKIREV--GLF--PDSVTQRAILHILCQR-----------NMVQEAEAVIIEMEKCGLHIDE 466 (1004)
Q Consensus 404 -~~~~-~~g~~~~A~~~~~~m~~~--g~~--p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~ 466 (1004)
..|. +.|.+++++++..++... +.. .....|..+.-+|... ....++++.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 2222 346677777766666552 111 1122233222222211 1122344444444443322 33
Q ss_pred CcHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHH
Q 048751 467 HSVPGVMKMYINEGLLHQAKIIFKKCQLD-GGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKA 545 (1004)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 545 (1004)
.....+.--|...++++.|....++.+.. ...+..+|.-++-++...+++.+|+.+.+...+..|. |-.....-+..
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhh
Confidence 34444444445555555555555555444 3444445555555555555555555554444332111 11111111111
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHh
Q 048751 546 YGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGA--GFKPQCLTFSSVIAAYARLGQLS 623 (1004)
Q Consensus 546 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~ 623 (1004)
-...++.++|+.....+... .-+.... ...++-....+....+.-. .......++..+.......+...
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~--we~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLAL--WEAEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhhcccHHHHHHHHHHHHHH--HHhhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 22234444444433333221 0000000 0000001111111111000 00001111111111110000000
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 624 NAVDLFHEMRRAGVEPNE-VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKM 702 (1004)
Q Consensus 624 ~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 702 (1004)
.-... +...-+.|.. .+|..+ ...|......+.+.+..++|...+.+.
T Consensus 628 ~se~~---Lp~s~~~~~~~~~~~~~----------------------------~~lwllaa~~~~~~~~~~~a~~CL~Ea 676 (799)
T KOG4162|consen 628 GSELK---LPSSTVLPGPDSLWYLL----------------------------QKLWLLAADLFLLSGNDDEARSCLLEA 676 (799)
T ss_pred ccccc---cCcccccCCCCchHHHH----------------------------HHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 00000 0000001110 000000 223444555556666666666665555
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCH
Q 048751 703 KEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID--AAEEMKLSGLLRDV 780 (1004)
Q Consensus 703 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~ 780 (1004)
....+ .....|......+...|.+++|.+.|......+|.++.+..+++.++.+.|+..-|.. ++..+.+.++ .+.
T Consensus 677 ~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~ 754 (799)
T KOG4162|consen 677 SKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNH 754 (799)
T ss_pred Hhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCH
Confidence 54332 2444555555666666666666666666666666666666666666666666555555 6666666442 345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 781 ISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 781 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
..|..+...+-+.|+.++|.+.|....
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 666666666666666666666666654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-08 Score=101.36 Aligned_cols=287 Identities=12% Similarity=0.069 Sum_probs=183.1
Q ss_pred HHcCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHH
Q 048751 617 ARLGQLSNAVDLFHEMRRA-GVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQI-VLTSLIKAYSKIGCLEG 694 (1004)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~ 694 (1004)
+-.++...|...+-.+... -++.|+.....+..++...|+.++|+..|+...-.+ |+.. ......-.+.+.|+++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhh
Confidence 3345555565555444432 345678888999999999999999999999887643 3322 22233334567888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 695 AKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
...+...+.... +-....|-.-+..+....+++.|+.+-++.++.++.+...|..-+.++...|+.++|.-.|+....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~- 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM- 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh-
Confidence 888877776532 123344444455666778899999999999999899999999999999999999999999999887
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-cCCCcHHHHHHHHhHhhccCCchhh
Q 048751 775 GLLR-DVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLF-TILK-KGGFPIEAVKQLQSSYQEVKPYASE 851 (1004)
Q Consensus 775 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~ 851 (1004)
+.| +...|..|+.+|...|++.+|...-+..... +..+..++..+. ..+. ...--++|.+++++.+...|.....
T Consensus 363 -Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 363 -LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred -cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 344 5789999999999999999998888776543 333344444331 2222 1122355666666665555543332
Q ss_pred -hHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 852 -AIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 852 -~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
..+..+....|.+++++..+++.+.. .+|....+.|+..+...+.+++|++.|..++.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22334444444555555555544444 22444444455555555555555555544443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.6e-08 Score=95.22 Aligned_cols=412 Identities=14% Similarity=0.071 Sum_probs=255.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 048751 368 IYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMV 447 (1004)
Q Consensus 368 l~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 447 (1004)
+.-+....++..|+.+++.-...+-+-...+-.-+..++.+.|++++|+..|..+... -.|+...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 6666778899999999987765432222233344566778899999999999888774 456777777787777788999
Q ss_pred HHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 048751 448 QEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKR 527 (1004)
Q Consensus 448 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 527 (1004)
.+|..+.....+ ++-....+.....+.++-.+-..+...+.. ..+-...|+.+......+.+|++++.++.
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887655432 233345556666677777777666665533 22445666777677778889999998886
Q ss_pred hhcCCCCCHHHHHHHHH-HHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 048751 528 DLVGQKKSVVEYNVMIK-AYGKSKLYDKAFSLFKVMKNLGTWPD-ECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQ 605 (1004)
Q Consensus 528 ~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 605 (1004)
. ..|.-...|..+. +|.+..-++-+.++++-..+.- || ....|.......+.=+-..|..-...+.+.+-..
T Consensus 179 ~---dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 179 Q---DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred h---cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 5 5666666665443 4667777888888887776642 44 3444544444444333334444444444432111
Q ss_pred HHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048751 606 CLTFSSVIAAYARL-----GQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLT 680 (1004)
Q Consensus 606 ~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 680 (1004)
-..+.-+++. .+-+.|++++-.+.+. .|. .--.|+--|.+++++.+|..+.+++.- ..|-.....
T Consensus 253 ----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilK 322 (557)
T KOG3785|consen 253 ----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILK 322 (557)
T ss_pred ----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHH
Confidence 1223334443 3457788877766653 333 233455567888888888887766532 122222222
Q ss_pred HHHHHH-----HHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 681 SLIKAY-----SKIGCLEGAKQVYEKMKEMEGGPDTV-ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 681 ~li~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
.+..+- .......-|.+.|+..-..+...|.. --..+...+.-.-++++.+.+++.+..-...|...-..++.+
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQA 402 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQA 402 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHH
Confidence 222221 11123445666666555544443332 234566666667778888888888877776666666678888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHH
Q 048751 755 YKTMGMLDEAIDAAEEMKLSGLLRDVISY-NQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
++..|++.+|.++|-++....+ .|..+| ..|.++|.+.++++-|++++-++
T Consensus 403 k~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 8888888888888877655333 344455 44566778888888877766544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.3e-07 Score=98.49 Aligned_cols=412 Identities=15% Similarity=0.176 Sum_probs=194.2
Q ss_pred hhHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-C-------C-CC
Q 048751 326 TSTYNTLID--LYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEES-R-------I-SP 394 (1004)
Q Consensus 326 ~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~-g-------~-~p 394 (1004)
..|-..+++ .|...|+.+.|.+-.+-++ +...|..|...|.+..++|-|.-.+-.|... | . .|
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 345555554 3556677777777665554 3355777777777777777776666655432 1 0 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHH
Q 048751 395 DTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMK 474 (1004)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 474 (1004)
+ .+-.-..-.....|.+++|..+|++-++. ..|=..|-..|++++|.++-+.=.+-. -..||.....
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAK 866 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHH
Confidence 1 12222223344567777777777776652 223333445677777777655322211 1245555555
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhH
Q 048751 475 MYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDK 554 (1004)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 554 (1004)
-+-..++.+.|++.|++..... ..+...| .....+++.|-+ ...|...|.-....+-..|+.+.
T Consensus 867 ~Lear~Di~~AleyyEK~~~ha---fev~rmL-------~e~p~~~e~Yv~------~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHA---FEVFRML-------KEYPKQIEQYVR------RKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChH---HHHHHHH-------HhChHHHHHHHH------hccchHHHHHHHHHHhcccchHH
Confidence 5666677777777776542100 0000000 000011111100 11122222223333344555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 048751 555 AFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRR 634 (1004)
Q Consensus 555 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 634 (1004)
|+.+|..... |.++++..|-.|+.++|-++-++ .-|.....-|.+.|-..|++.+|..+|-+...
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 6555554433 34455555556666666555443 12444444556666666666666666655432
Q ss_pred cC--C----CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----
Q 048751 635 AG--V----EPNEVVYGSLINGFAATG--KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEK----- 701 (1004)
Q Consensus 635 ~g--~----~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----- 701 (1004)
.. + ..| .-..|.+.....| +.-.|-.+|++. |.. +...+..|-++|.+.+|+++.=+
T Consensus 996 fsnAIRlcKEnd--~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 996 FSNAIRLCKEND--MKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence 10 0 000 0001111111111 122223333322 111 12233345566666665554211
Q ss_pred ---HH--hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCC
Q 048751 702 ---MK--EMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK-LSG 775 (1004)
Q Consensus 702 ---~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 775 (1004)
++ ......|+...+.-.+.++...++++|..++-...+. ..-+. +|+..+..-..++-+.|- .++
T Consensus 1066 aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~--------~~Alq-lC~~~nv~vtee~aE~mTp~Kd 1136 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF--------SGALQ-LCKNRNVRVTEEFAELMTPTKD 1136 (1416)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHH-HHhcCCCchhHHHHHhcCcCcC
Confidence 11 1233446666777777777777777777776655442 11122 222222222223333332 111
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 776 LLRD----VISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 776 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
-.|+ ......+...|.++|.+..|-+-|.+.
T Consensus 1137 ~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1137 DMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 1233 234566677788888887777666554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-08 Score=104.96 Aligned_cols=449 Identities=12% Similarity=0.076 Sum_probs=241.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048751 332 LIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGN 411 (1004)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 411 (1004)
=++.+.+.|++++|.+..++++..+ +-|...+..-+-++.+.++|++|+.+.+.-.... .-+...|. -..+..+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fE-KAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFE-KAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHH-HHHHHHHccc
Confidence 3577888999999999999998876 3355667777778889999999996665432110 01111111 2333447899
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHH-HHhcCCHHHHHHHH
Q 048751 412 INAALRYYWKIREVGLFPDS-VTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKM-YINEGLLHQAKIIF 489 (1004)
Q Consensus 412 ~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~~~g~~~~A~~~~ 489 (1004)
.++|+..++ |+.++. .+...-.+.+.+.|++++|+.+|+.+.+++..- +..-+.+ +...+....+. +.
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd----~d~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD----QDEERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHhhhHH-HH
Confidence 999999888 344443 466677788889999999999999998875431 1111111 11111111111 23
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhc-----CCCCC---HH-----HHHHHHHHHHcCCChhHHH
Q 048751 490 KKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLV-----GQKKS---VV-----EYNVMIKAYGKSKLYDKAF 556 (1004)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~---~~-----~~~~li~~~~~~g~~~~A~ 556 (1004)
+........+-..+...+-.+...|++.+|++++....+.. ....+ .. .--.|.-.+...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 33333333455666777888889999999999998873211 01111 11 1122334466789999999
Q ss_pred HHHHHHHHCCCCCCHHHH----HHHHHHHHcCCChHH--HHHHHHHHHh-----------CCCCCCHHHHHHHHHHHHHc
Q 048751 557 SLFKVMKNLGTWPDECTY----NSLVQMFAGGDLMGQ--AVDLLAEMQG-----------AGFKPQCLTFSSVIAAYARL 619 (1004)
Q Consensus 557 ~l~~~m~~~g~~p~~~t~----~~ll~~~~~~~~~~~--a~~~~~~m~~-----------~g~~~~~~~~~~li~~~~~~ 619 (1004)
.++...++..+ +|.... |.|+.. ..-.++-. ++..++.... ..-......-+.++..|.
T Consensus 245 ~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 245 SIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99999888765 344222 223222 21111111 1111111110 000000001112222222
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 620 GQLSNAVDLFHEMRRAGVEPNEVVYGSLIN-GFA-ATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQ 697 (1004)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~-~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 697 (1004)
+..+.+.++...... ..|... +.+++. +.- +......|.+++...-+....-...+.-.++......|+++.|.+
T Consensus 321 nk~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 NKMDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhHHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 233334333333221 123322 222322 222 222456666666666554332234455556666677777877777
Q ss_pred HHH--------HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHH----HHHHHHHHHHhcCCHH
Q 048751 698 VYE--------KMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG---QVDAV----SFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 698 ~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~----~~~~l~~~~~~~g~~~ 762 (1004)
++. .+.+.+..|. +..++...+.+.++.+.|..++....... ..... .+..++..-.+.|+.+
T Consensus 398 il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 777 4444444333 33456666667666666666666654432 11111 2223333344557777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 763 EAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 763 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
+|..+++++.+.+. +|..+...++.+|++. +++.|..+-.
T Consensus 476 ea~s~leel~k~n~-~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 476 EASSLLEELVKFNP-NDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHhCC-chHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 77777777776442 5566666666666653 4455554433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-08 Score=99.86 Aligned_cols=308 Identities=13% Similarity=0.041 Sum_probs=232.9
Q ss_pred CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048751 637 VEPNEVVYGSLING--FAATGKVEEALQYFRMMREC-GLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVA 713 (1004)
Q Consensus 637 ~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 713 (1004)
++|+..+....+.+ .+..++...|...+-.+... -++-|......+.+.+...|+.++|+..|+.....++. +...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhh
Confidence 34444444444443 34456656666655544433 25567788899999999999999999999998764432 2222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 714 SNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATN 793 (1004)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 793 (1004)
.....-.+.+.|++++-..+...+..........|..-+..+...++++.|+.+-++.++.+. .+...|..-...+...
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhc
Confidence 333345567889999999999888877666666777777788889999999999999998542 3466777777888999
Q ss_pred CCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhh-HHHHH--HHHHhhhHhhhh
Q 048751 794 GQLRQCGELLHEMLTQKLL-PDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEA-IITSV--YSVVGLNALALG 869 (1004)
Q Consensus 794 g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~A~~ 869 (1004)
|++++|.-.|+..+. +. -+...|.-++..|...|+..||.-.-+..++..+...... ++++. +..-..-++|..
T Consensus 348 ~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 999999999999864 45 4677999999999999999999998888888776655433 23222 223344567899
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCC
Q 048751 870 TCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKM 949 (1004)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 949 (1004)
++++.+... |.-..+.+.++..+...|+.++++.++++.+. ..||....+.|.+.+.....+++|...+..+. .+
T Consensus 426 f~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL--r~ 500 (564)
T KOG1174|consen 426 FAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL--RQ 500 (564)
T ss_pred HHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH--hc
Confidence 999998885 33556788899999999999999999999887 68999999999999999999999999888775 34
Q ss_pred CCcH
Q 048751 950 EPNE 953 (1004)
Q Consensus 950 ~p~~ 953 (1004)
+|..
T Consensus 501 dP~~ 504 (564)
T KOG1174|consen 501 DPKS 504 (564)
T ss_pred Cccc
Confidence 5654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-09 Score=123.69 Aligned_cols=213 Identities=14% Similarity=0.033 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 691 CLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEE 770 (1004)
Q Consensus 691 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 770 (1004)
++++|...++++.+.++. +..++..+..++...|++++|...|+++.+.+|.+..++..++.++...|++++|+..+++
T Consensus 319 ~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 319 AMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 356666666666665433 4555666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCch
Q 048751 771 MKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYA 849 (1004)
Q Consensus 771 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 849 (1004)
+.+.. |+ ...+..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+++.
T Consensus 398 Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~-------- 467 (553)
T PRK12370 398 CLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI-------- 467 (553)
T ss_pred HHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh--------
Confidence 66644 33 22222333345556666666666666554321112223344444444555555555444432
Q ss_pred hhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 048751 850 SEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ-GLEPDIVTCINLVGCY 928 (1004)
Q Consensus 850 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~l~~~~ 928 (1004)
... .+.+....+.+...|...| ++|...++++.+. +..|+...+..++ +
T Consensus 468 -------------------------~~~-~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~ 517 (553)
T PRK12370 468 -------------------------STQ-EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--L 517 (553)
T ss_pred -------------------------hhc-cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--H
Confidence 222 1223445555556666666 4666666666542 2334333333333 3
Q ss_pred HhcCChhHHHHHHHHHH
Q 048751 929 GKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 929 ~~~g~~~~A~~~~~~~~ 945 (1004)
.-.|+.+.+..+ +++.
T Consensus 518 ~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 518 VAHGEAIAEKMW-NKFK 533 (553)
T ss_pred HHHhhhHHHHHH-HHhh
Confidence 344555555555 5553
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-10 Score=128.89 Aligned_cols=248 Identities=10% Similarity=-0.021 Sum_probs=164.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 690 GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL---------GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
+.+++|...+++..+..+. +...|..+..++... +++++|...++++.+.+|.+..++..++.++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4567888888888776543 445566665554422 347788888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHcCCCcHHHHHHH
Q 048751 761 LDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG-TFKVLFTILKKGGFPIEAVKQL 838 (1004)
Q Consensus 761 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~l 838 (1004)
+++|+..++++++.+ |+ ...+..+...+...|++++|...+++.++. .|+.. .+..+...+.
T Consensus 354 ~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~------------ 417 (553)
T PRK12370 354 YIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITY------------ 417 (553)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHH------------
Confidence 888888888888755 44 566777778888888888888888887654 33322 1112222222
Q ss_pred HhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 048751 839 QSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDI 918 (1004)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 918 (1004)
..|++++|++.++++++..+|.++..+..++.+|...|+.++|.+.+.++.. ..|+.
T Consensus 418 ---------------------~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~ 474 (553)
T PRK12370 418 ---------------------YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITG 474 (553)
T ss_pred ---------------------hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchh
Confidence 3345555666666666654455667788899999999999999999999865 35654
Q ss_pred H-HHHHHHHHHHhcCChhHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 048751 919 V-TCINLVGCYGKAGLVEGVKRIHSQLKY-GKMEPNENLFKAVIDAYRNANREDLADLACQEMRTA 982 (1004)
Q Consensus 919 ~-t~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 982 (1004)
. ....+...+...| +.|...++.+.. ....|....+ +-.+|.-.|+.+.+..+ +++...
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4 4445555666767 477777766642 1222222222 33455556777777666 666654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-06 Score=95.69 Aligned_cols=267 Identities=17% Similarity=0.246 Sum_probs=150.9
Q ss_pred HHHHHhhhc--cCCChHHHHHHHH-----hhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 123 IDNTLNSFC--ENLSPKEQTVVLK-----EQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEM 195 (1004)
Q Consensus 123 ~~~~l~~~~--~~~~~~~~~~~l~-----~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m 195 (1004)
+.+.|+.|. ..+++.....+|. ..|+-+.|.+..+.+++ -.+|..|.+++.+.++++-|.-++-.|
T Consensus 711 ~~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm 783 (1416)
T KOG3617|consen 711 VAKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHM 783 (1416)
T ss_pred hhhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhh
Confidence 345566664 4466666666666 35788888877777664 457999999999999999988888777
Q ss_pred HhC-CC--------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhc
Q 048751 196 AKN-GV--------LPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWC 266 (1004)
Q Consensus 196 ~~~-~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 266 (1004)
... |. .|+ .+=-.........|..++|+.+|++-+.. ..|=..|...|.|++|.++-+.-
T Consensus 784 ~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~- 852 (1416)
T KOG3617|consen 784 KNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETK- 852 (1416)
T ss_pred hhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhc-
Confidence 642 11 121 22112222334678999999999988765 23445677889999999886531
Q ss_pred ccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHH
Q 048751 267 LGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAA 346 (1004)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~ 346 (1004)
| . -.-..||..-..-+-..++.+.|+
T Consensus 853 ------D------------------------------------R------------iHLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 853 ------D------------------------------------R------------IHLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred ------c------------------------------------c------------eehhhhHHHHHHHHHhhccHHHHH
Confidence 0 0 011346766677777778888888
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048751 347 NVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVG 426 (1004)
Q Consensus 347 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 426 (1004)
+.|++.-- |--..+. |+. .+........+.+. |...|.-.....-..|+.+.|+.+|...++
T Consensus 879 eyyEK~~~----hafev~r-mL~-----e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 879 EYYEKAGV----HAFEVFR-MLK-----EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHhcCC----hHHHHHH-HHH-----hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 88865321 1111111 111 11112222222222 223333333334445566666655554433
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHh
Q 048751 427 LFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKC 492 (1004)
Q Consensus 427 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 492 (1004)
|-++++..|-.|+.++|.++-++-- |..+-..+.+.|-..|++.+|..+|.++
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3445555555555555555544321 3333445555555555555555555444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-07 Score=100.49 Aligned_cols=423 Identities=15% Similarity=0.100 Sum_probs=250.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048751 323 PRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPD-TKTYNI 401 (1004)
Q Consensus 323 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ 401 (1004)
|++..++..-+-++.+.+++++|+.+.+.-... ..+.+-+---..+..+.+..++|+..++ |+.++ ..+...
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L 115 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLEL 115 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHH
Confidence 666777888888999999999999554322110 1111111122445568999999999998 33333 335666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCCCcH---HHHHHHHH
Q 048751 402 LLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILC-QRNMVQEAEAVIIEMEKCGLHIDEHSV---PGVMKMYI 477 (1004)
Q Consensus 402 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~l~~~~~ 477 (1004)
-...+.+.|++++|+++|+.+.+.+.. | +...+.+=+ ..+..-.+ ..+......| ..+| ......+.
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~----~~~q~v~~v~-e~syel~yN~Ac~~i 186 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQV----QLLQSVPEVP-EDSYELLYNTACILI 186 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhH----HHHHhccCCC-cchHHHHHHHHHHHH
Confidence 667788999999999999999886542 2 222221111 11111111 1222222222 3344 34455667
Q ss_pred hcCCHHHHHHHHHHhhh--------cCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHH----H
Q 048751 478 NEGLLHQAKIIFKKCQL--------DGGLS-------SKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVV----E 538 (1004)
Q Consensus 478 ~~g~~~~A~~~~~~~~~--------~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~ 538 (1004)
..|++.+|+++++.... ++..+ ..+...++-++...|+.++|..++...... .++|.. .
T Consensus 187 ~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~ 264 (652)
T KOG2376|consen 187 ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR--NPADEPSLAVA 264 (652)
T ss_pred hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--cCCCchHHHHH
Confidence 78999999999988822 11111 125567788889999999999999888764 455542 3
Q ss_pred HHHHHHHHHcCCChh-HHHHHHHHHHHCC-----------CCCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 048751 539 YNVMIKAYGKSKLYD-KAFSLFKVMKNLG-----------TWPDECTY-NSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQ 605 (1004)
Q Consensus 539 ~~~li~~~~~~g~~~-~A~~l~~~m~~~g-----------~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 605 (1004)
-|.++..-....-.+ .++..++...... .+ ..+.. +.++..+ .+..+.+.++...... ..|.
T Consensus 265 ~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk-~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~ 339 (652)
T KOG2376|consen 265 VNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQK-QAIYRNNALLALF--TNKMDQVRELSASLPG--MSPE 339 (652)
T ss_pred hcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCch
Confidence 444443322222122 1222222221110 00 11111 2222222 3444555554443322 2344
Q ss_pred HHHHHHHHHHHH-HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCH
Q 048751 606 CLTFSSVIAAYA-RLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFR--------MMRECGLWANQ 676 (1004)
Q Consensus 606 ~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~~~~ 676 (1004)
...-+.+..++. +...+..|..++....+....-.....-.++......|+++.|++++. .+.+.+..|.
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~- 418 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG- 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh-
Confidence 333333333332 233577788888877765322224566667778889999999999999 5555554444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG--GPD----TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAA 750 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 750 (1004)
+..++...+.+.++-+.|..++...+..-. .+. ..++..++..-.+.|+-++|..+++++.+.+|+|..+...
T Consensus 419 -~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~ 497 (652)
T KOG2376|consen 419 -TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQ 497 (652)
T ss_pred -HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHH
Confidence 455666677777777777777776543210 111 1233334444557799999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 048751 751 MMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
++.+|+.. +.+.|..+-..+
T Consensus 498 lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 498 LVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhc-CHHHHHHHhhcC
Confidence 99999988 677777665544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-09 Score=109.07 Aligned_cols=200 Identities=16% Similarity=0.068 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 34556667777777888888888888776653 33466777777778888888888888887776543 35566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEG-GPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
.+...|++++|.+.++....... ......+..+..++...|++++|...+++..+..|.+...+..++..+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 77888888888888888776432 22344566677788888888888888888888887778888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 764 AIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
|...+++..+.. ..+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888887752 2345666677777778888888888777664
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-07 Score=106.24 Aligned_cols=264 Identities=12% Similarity=0.067 Sum_probs=159.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHcc-----CCHHHHHHHHHHHHHCCCCCCHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFN-TMIYTCGSH-----GNLSEAEALFCMMEESRISPDTKTY 399 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~~~ 399 (1004)
..........+.+.|+.++|..+|..+++++ |+...|- .+..+.... .+.+...++++++...- |...+.
T Consensus 38 ~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~ 113 (517)
T PF12569_consen 38 LAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAP 113 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccch
Confidence 4567778888999999999999999999885 5555554 444444222 25677788888887653 433333
Q ss_pred HHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC----------CC
Q 048751 400 NILLSLYADVGNIN-AALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKC----GL----------HI 464 (1004)
Q Consensus 400 ~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~----------~~ 464 (1004)
..+.-.+..-..+. .+..++..+...|++ .+++.|-..|......+-..+++...... +. .|
T Consensus 114 ~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p 190 (517)
T PF12569_consen 114 RRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPP 190 (517)
T ss_pred hHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCc
Confidence 22222222212232 344556666777753 34455555555444555555555555432 11 11
Q ss_pred CC--CcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHH
Q 048751 465 DE--HSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVM 542 (1004)
Q Consensus 465 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 542 (1004)
.. +++.-+.+.|...|++++|.+++++++...|..+..+..-+..|-..|++.+|...++..+.+ ...|-..=+..
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~ 268 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--DLADRYINSKC 268 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--ChhhHHHHHHH
Confidence 11 244555666777788888888888877777777777777777777788887777777777664 55555555666
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHcCCChHHHHHHHHHHH
Q 048751 543 IKAYGKSKLYDKAFSLFKVMKNLGTWPDECT--------YNSLVQMFAGGDLMGQAVDLLAEMQ 598 (1004)
Q Consensus 543 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--------~~~ll~~~~~~~~~~~a~~~~~~m~ 598 (1004)
+..+.++|++++|.+++....+.+..|-... ..-...+|.+.|++..|++.|..+.
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6777777777777777777766553222111 1223344555566555555544443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-10 Score=109.90 Aligned_cols=231 Identities=13% Similarity=0.081 Sum_probs=185.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 540 NVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARL 619 (1004)
Q Consensus 540 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 619 (1004)
+.|.++|.+.|.+.+|.+-|+.-.... |-+.||..|-+.|.+..+...|+.++.+-++. ++-++.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 567777788888888887777776643 55567777778888888888888888777764 344444445677778888
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 620 GQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVY 699 (1004)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 699 (1004)
++.++|.++|+...+.. +.++.....+...|.-.++++.|+.+++++.+.|+ -++..|+.+.-+|.-.++++.++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988763 45677777788888888999999999999999988 57788888888888899999999999
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 700 EKMKEMEGGPDT--VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 700 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
++....-..|+. .+|..+.......|++..|.+.|+-....++.+..+++.|+-.-.+.|++++|..++.......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 888765544443 4677788888888999999999999998888899999999999999999999999998887743
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-09 Score=109.64 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
....+..+...+...|++++|...++++.+..|.+...+..++..+...|++++|++.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3456667777788888888888888888777777777888888888888888888888888877543 345667777777
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 048751 790 FATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~ 808 (1004)
+...|++++|...+++..+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHcccHHHHHHHHHHHHh
Confidence 7888888888888887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.7e-09 Score=113.46 Aligned_cols=243 Identities=17% Similarity=0.185 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-C
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREK-------GQVDA-VSFAAMMYLYKTMGMLDEAIDAAEEMKLS-----GL-L 777 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~ 777 (1004)
.+...+...|...|+++.|+.+++...+. ..+.. ...+.++..|...+++++|+.+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555777888888888888888877665 12222 23445777888888888888888887642 21 1
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCChh-hHHHHHHHHHcCCCcHHHHHHHHhHhhccCCch
Q 048751 778 RD-VISYNQVMACFATNGQLRQCGELLHEMLTQ-----KL-LPDNG-TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYA 849 (1004)
Q Consensus 778 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~~-~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 849 (1004)
|. ..+++.|..+|.+.|++++|..++++.++- +. .|... .+..+...+...++.++|..+++..+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al------- 352 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL------- 352 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-------
Confidence 22 456777888888888888888888877431 11 11111 23344445556666666666665432
Q ss_pred hhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHHHH
Q 048751 850 SEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ-----G-LEPD-IVTCI 922 (1004)
Q Consensus 850 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~pd-~~t~~ 922 (1004)
+.+.+......+.-..+++.|+..|...|++++|.++|++++.. | ..+. ...++
T Consensus 353 -------------------~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 353 -------------------KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred -------------------HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 22222222211123457899999999999999999999998852 1 2332 45778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH----cC-CCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 923 NLVGCYGKAGLVEGVKRIHSQLK----YG-KMEPN-ENLFKAVIDAYRNANREDLADLACQEMR 980 (1004)
Q Consensus 923 ~l~~~~~~~g~~~~A~~~~~~~~----~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 980 (1004)
.|...|.+.+++++|.++|.+.. .. +..|+ ..+|..|+..|.+.|++|+|.++.+++.
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88888989999988888886542 22 23345 4578999999999999999999988776
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-07 Score=92.28 Aligned_cols=398 Identities=14% Similarity=0.112 Sum_probs=233.8
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHH-HHH
Q 048751 534 KSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTF-SSV 612 (1004)
Q Consensus 534 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~l 612 (1004)
.++.-.--+.+.+...|++..|+..|....+.++. +..++..-...|...|+...|+.-+...++. +||-..- ..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 34444556788888888888888888888774321 2334444455677778888888878777764 5664332 223
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCL 692 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 692 (1004)
...+.+.|.++.|..-|+...+.. |+..+ ..+|.+-+....+ .......+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~-------------~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGL-------------VLEAQSKLALIQE------HWVLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcch-------------hHHHHHHHHhHHH------HHHHHHHHHHHhcCCch
Confidence 445677888888888888887753 43211 1111111111111 11223344455677899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
..|+.....+++..+ -|...+..-..+|...|++..|+.-+....+....+......+...+...|+.+.++...++.+
T Consensus 172 ~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999998888544 3777777888999999999999999988888888888898999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhh-
Q 048751 773 LSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASE- 851 (1004)
Q Consensus 773 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~- 851 (1004)
+. .||...+... |-+. .+..+.+..|.+ ....+++.++++..+..++..|.....
T Consensus 251 Kl--dpdHK~Cf~~---YKkl---kKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 251 KL--DPDHKLCFPF---YKKL---KKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred cc--CcchhhHHHH---HHHH---HHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 84 4775432111 1111 111111111110 111233333333444444433332111
Q ss_pred ----hHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 048751 852 ----AIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDI-VTCINLVG 926 (1004)
Q Consensus 852 ----~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~l~~ 926 (1004)
-++...+...+...+|++.+.+++... |.|+.++.--+.+|.-...+|+|+.-|+++.+ +.++. ..-..+
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~sn~~~reGl-- 381 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNESNTRAREGL-- 381 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcccHHHHHHH--
Confidence 112223445556666777777777765 33677777777788888888888888888877 44432 222222
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCchhhhhcccccc
Q 048751 927 CYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTAFESPEHDDSEFEENSEESY 1001 (1004)
Q Consensus 927 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 1001 (1004)
+.|+++.++.-+. .-|..|+ -.+.-...+-.+.+++|..+--.-.|.+.+..--+|+++
T Consensus 382 --------e~Akrlkkqs~kR------DYYKILG--VkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKF 440 (504)
T KOG0624|consen 382 --------ERAKRLKKQSGKR------DYYKILG--VKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKF 440 (504)
T ss_pred --------HHHHHHHHHhccc------hHHHHhh--hcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhh
Confidence 3444443333111 1222221 123333455556666666555555555555555555544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=8e-09 Score=109.31 Aligned_cols=233 Identities=12% Similarity=-0.041 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 655 GKVEEALQYFRMMRECGL-WAN--QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAE 731 (1004)
Q Consensus 655 g~~~~A~~~~~~m~~~g~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 731 (1004)
+..+.++.-+.+++.... .|+ ...|..+...+...|++++|...|++..+..+. +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 445556666665554321 111 233555555566666666666666666654432 4556666666666666666666
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048751 732 SMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKL 811 (1004)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 811 (1004)
..|++..+..|.+..+|..++.++...|++++|++.+++..+.. |+..........+...+++++|...+.+.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 66666666666666666666666666666666666666666543 33221111111223345566666666554322 1
Q ss_pred CCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHH
Q 048751 812 LPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIY 891 (1004)
Q Consensus 812 ~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 891 (1004)
.|+... .. ......|+..++ +.++.+.+. ++...+.. +....+|..++.
T Consensus 196 ~~~~~~-~~--~~~~~lg~~~~~-~~~~~~~~~--------------------------~~~~~~l~-~~~~ea~~~Lg~ 244 (296)
T PRK11189 196 DKEQWG-WN--IVEFYLGKISEE-TLMERLKAG--------------------------ATDNTELA-ERLCETYFYLAK 244 (296)
T ss_pred CccccH-HH--HHHHHccCCCHH-HHHHHHHhc--------------------------CCCcHHHH-HHHHHHHHHHHH
Confidence 121111 11 111122333222 111111110 01111111 224567999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 892 AFKSSGKNDKALNTFMKMLDQGLEPDIVTCIN 923 (1004)
Q Consensus 892 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 923 (1004)
.+.+.|++++|+..|++.++.+ .||.+-+..
T Consensus 245 ~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 245 YYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 9999999999999999998732 235544443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-07 Score=102.88 Aligned_cols=181 Identities=17% Similarity=0.202 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHH
Q 048751 554 KAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGA----G----------FKPQCL--TFSSVIAAYA 617 (1004)
Q Consensus 554 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g----------~~~~~~--~~~~li~~~~ 617 (1004)
.+...+..+...|++ .+++.+-..|.......-...++...... + -+|+.. ++.-+...|.
T Consensus 129 ~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 344555666677753 23445555555455555555555554321 1 134443 3355567777
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 618 RLGQLSNAVDLFHEMRRAGVEPN-EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAK 696 (1004)
Q Consensus 618 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 696 (1004)
..|++++|++++++..++ .|+ +..|..-.+.|-+.|++.+|.+.++.....+. .|...-+-.+..+.+.|++++|.
T Consensus 206 ~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~ 282 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAE 282 (517)
T ss_pred HhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888888876 455 67788888888888888888888888888765 57777777888888888888888
Q ss_pred HHHHHHHhCCCCCCHH------HH--HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048751 697 QVYEKMKEMEGGPDTV------AS--NTMISLYAELGMVTEAESMFNDIREK 740 (1004)
Q Consensus 697 ~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (1004)
+++....+.+..|... .| ...+.+|.+.|++..|++.|..+.+.
T Consensus 283 ~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 283 KTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888887765433221 22 33456777888888888888777654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-09 Score=103.34 Aligned_cols=235 Identities=13% Similarity=0.032 Sum_probs=154.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
+.+..+|.+.|.+.+|.+.|+...+.. |-+.||..|.++|.+..+...|+.++.+-.+.- +.++.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 556677777777777777777666543 555566677777777777777777777666532 22443444556667777
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
++.++|.++|+...+..+.++.+..+++..|.-.++.+-|+.+++++++.|. -++..|+.+.-+|...++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7777777777777777777777777777777777777777777777777776 566677777777777777777766666
Q ss_pred HHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCch
Q 048751 805 EMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSF 884 (1004)
Q Consensus 805 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~ 884 (1004)
+.+...-.|+ +|.++|-. ++.+....|++..|.+.|+-.+..+ +.+..
T Consensus 383 RAlstat~~~------------------~aaDvWYN-------------lg~vaV~iGD~nlA~rcfrlaL~~d-~~h~e 430 (478)
T KOG1129|consen 383 RALSTATQPG------------------QAADVWYN-------------LGFVAVTIGDFNLAKRCFRLALTSD-AQHGE 430 (478)
T ss_pred HHHhhccCcc------------------hhhhhhhc-------------cceeEEeccchHHHHHHHHHHhccC-cchHH
Confidence 6654322222 12111110 1122345566666777777666665 34667
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
++|.|+..-.+.|+.++|..++..... +.|+
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhh--hCcc
Confidence 888888888888888888888887765 4554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.4e-09 Score=113.60 Aligned_cols=243 Identities=21% Similarity=0.230 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEM-----EG-GPDTV-ASNTMISLYAELGMVTEAESMFNDIREK-----GQV- 743 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~- 743 (1004)
.+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... |+.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555777777777777777777766543 11 22332 2344667888888888888888887543 233
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC
Q 048751 744 --DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS-----GL-LRDV-ISYNQVMACFATNGQLRQCGELLHEMLTQ---KL 811 (1004)
Q Consensus 744 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 811 (1004)
-..+++.|..+|.+.|++++|...+++..+- |. .|+. ..++.++..+...+++++|..++++..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 3346777888889999988888777766531 21 1332 34677778889999999999999877432 12
Q ss_pred CCC----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHH
Q 048751 812 LPD----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYN 887 (1004)
Q Consensus 812 ~p~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 887 (1004)
.++ ..++..+...|.+.|+..+|.+++++++.. .++.......-...++|
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~--------------------------~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI--------------------------LRELLGKKDYGVGKPLN 413 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH--------------------------HHhcccCcChhhhHHHH
Confidence 222 234555666666666666666655554332 11111111122345789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 888 VAIYAFKSSGKNDKALNTFMKMLD----QGL-EPD-IVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 888 ~l~~~~~~~g~~~~A~~~~~~m~~----~g~-~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
.|+..|.+.+++++|.++|.+... .|. .|+ ..+|.+|...|.+.|+++.|+++.+.+.
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999999988764 222 344 3489999999999999999999988764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-08 Score=94.19 Aligned_cols=207 Identities=13% Similarity=0.036 Sum_probs=154.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 714 SNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATN 793 (1004)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 793 (1004)
...|.-.|.+.|+...|.+-+++.++.+|.+..+|..++..|.+.|..+.|.+.|++.+.... .+..+.|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhC
Confidence 445677888999999999999999999999999999999999999999999999999988542 3467888899999999
Q ss_pred CCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHH
Q 048751 794 GQLRQCGELLHEMLTQKL-LPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCE 872 (1004)
Q Consensus 794 g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~ 872 (1004)
|++++|...|++.+..-. ..-..++..+.-+..+.|+.+.|.+.+++.++..+.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~------------------------- 171 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ------------------------- 171 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-------------------------
Confidence 999999999999876522 223446666666666777777777666666554433
Q ss_pred HHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc
Q 048751 873 TLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN 952 (1004)
Q Consensus 873 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 952 (1004)
.+.+.-.+.......|++-.|..++++....|. ++...+-..+..-...|+.+.+.++-.++.. .-|.
T Consensus 172 ---------~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~ 239 (250)
T COG3063 172 ---------FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPY 239 (250)
T ss_pred ---------CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC
Confidence 334455556666777888888888888776544 7777777777777778888888777766652 2455
Q ss_pred HHHHHH
Q 048751 953 ENLFKA 958 (1004)
Q Consensus 953 ~~~~~~ 958 (1004)
+.-|.+
T Consensus 240 s~e~q~ 245 (250)
T COG3063 240 SEEYQT 245 (250)
T ss_pred cHHHHh
Confidence 544443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-11 Score=87.14 Aligned_cols=50 Identities=44% Similarity=0.575 Sum_probs=39.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 048751 202 PTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKE 251 (1004)
Q Consensus 202 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 251 (1004)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777888888888888888888888888888888888888888877764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-07 Score=99.67 Aligned_cols=386 Identities=14% Similarity=0.098 Sum_probs=225.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-CCcHHHHHHHHHhcCC
Q 048751 403 LSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHID-EHSVPGVMKMYINEGL 481 (1004)
Q Consensus 403 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~ 481 (1004)
..+.+..|+++.|+.+|-+.+.... ++.+.|..-..+|...|++++|++=-.+-.+. .|+ +..|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 3556778999999999988887644 37788999999999999999988766665554 333 3567778888888899
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh---hhhcCCCC-----CHHHHHHHHHHHHc-----
Q 048751 482 LHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGK---RDLVGQKK-----SVVEYNVMIKAYGK----- 548 (1004)
Q Consensus 482 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~-----~~~~~~~li~~~~~----- 548 (1004)
+++|+..|.+-+...+.+......+.+++..... +.+.|..- ....+.+. ....|..++..+-+
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999999999998888888888822111 11111100 00000000 00112222222211
Q ss_pred -----CCChhHHHHHHHHH-----HHCC-------CCC---------C-------------HHHHHHHHHHHHcCCChHH
Q 048751 549 -----SKLYDKAFSLFKVM-----KNLG-------TWP---------D-------------ECTYNSLVQMFAGGDLMGQ 589 (1004)
Q Consensus 549 -----~g~~~~A~~l~~~m-----~~~g-------~~p---------~-------------~~t~~~ll~~~~~~~~~~~ 589 (1004)
..++..|...+... ...| ..| . ..-...+..+..+..++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 11111111111100 0000 001 0 0112344455555566666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCCHHHHHH
Q 048751 590 AVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGS-------LINGFAATGKVEEALQ 662 (1004)
Q Consensus 590 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------li~~~~~~g~~~~A~~ 662 (1004)
|.+-+....+.. .+..-++....+|...|.+......-....+.|- -...-|+. +..+|.+.++++.|+.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 666666665543 3444455555666666666655555555444331 11122222 2234444556666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048751 663 YFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQ 742 (1004)
Q Consensus 663 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 742 (1004)
.|.+....-..|+. ..+....+++....+...-.++.. ..-...-...+.+.|++..|...|.+++...|
T Consensus 320 ~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 320 YYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 66665443222221 112223334444333332222211 11122235677888999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 743 VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 743 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
.|...|...+.+|.+.|.+..|++-.+..++.. |+ ...|..-..++....+++.|++.|++.++.
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988888888753 55 556777777777888888888888888755
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-10 Score=85.18 Aligned_cols=43 Identities=47% Similarity=0.737 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYT 370 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 370 (1004)
+||+||++|++.|++++|.++|++|.+.|+.||..||+.||++
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-07 Score=91.61 Aligned_cols=318 Identities=13% Similarity=0.094 Sum_probs=175.8
Q ss_pred CCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHH-HH
Q 048751 465 DEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNV-MI 543 (1004)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-li 543 (1004)
...-+..++..+.+..++.+|++++....+..+.+......|+.+|....++..|...++++.. ..|...-|.. -.
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~A 85 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQA 85 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH
Confidence 3334555666666677777777777776666676777777777888888888888877777654 3333333321 23
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 544 KAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQM--FAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQ 621 (1004)
Q Consensus 544 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 621 (1004)
..+.+.+.+.+|+.+...|... |+...-..-+.+ ....+++..+..++++.... -+..+.+.......+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeecccc
Confidence 4566777888888888777653 222222222222 23567777777777665532 233444445555667888
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHHcCCHHHHHH
Q 048751 622 LSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTS----LIKAYSKIGCLEGAKQ 697 (1004)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~ 697 (1004)
++.|++-|+...+.+--.....|+.-+. ..+.|+++.|+++..+++++|++-.+..-.- .+++-. .|+ -..
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~ 234 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLV 234 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hHH
Confidence 8888888888777543334556665444 3456788888888888887775432211000 000000 000 000
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 698 VYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG--QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
+... --+..+|.-...+.+.|+++.|.+.+..|.-+. ..|+.+...++-.-. .+++-+..+-+.-++..+
T Consensus 235 lh~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 235 LHQS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN 306 (459)
T ss_pred HHHH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC
Confidence 0000 011233444445566677777776666665443 235555544433222 223333333344444433
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 776 LLRDVISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 776 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
+ -...|+..++-.||+..-++-|-+++.+
T Consensus 307 P-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 P-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred C-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3 2245666666667777666666666654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-08 Score=102.90 Aligned_cols=223 Identities=10% Similarity=-0.053 Sum_probs=156.2
Q ss_pred HHHcCCHhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 616 YARLGQLSNAVDLFHEMRRAG-VEPN--EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCL 692 (1004)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 692 (1004)
....+..+.++.-+.++.... ..|+ ...|..+...|...|+.++|...|+...+..+ .+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCH
Confidence 334567788888888887532 1222 46688888899999999999999999998754 4678999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
++|...++...+..+. +..+|..++.++...|++++|.+.|++..+..|.++.. ......+...++.++|+..+++..
T Consensus 115 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999999986654 56778889999999999999999999999999888731 122223456778999999997766
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CC----C-ChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccC
Q 048751 773 LSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQK-LL----P-DNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVK 846 (1004)
Q Consensus 773 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~----p-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 846 (1004)
... .|+...+ .......|+..++ +.+..+.+.. .. | ....|..+...+.+.|+.++|+..++.++...+
T Consensus 193 ~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 432 2332222 2233345665544 3455554321 11 1 123455566666666666666666666655443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.3e-07 Score=93.75 Aligned_cols=436 Identities=17% Similarity=0.084 Sum_probs=257.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHH
Q 048751 438 LHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWA 517 (1004)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 517 (1004)
-++.+..|+++.|+..|.+.+..... |...|..-..+|...|++++|.+=-.+.....|..+..|...+..+.-.|+++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 34567789999999999998877655 77778888888999999999998888888888888899999999999999999
Q ss_pred HHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHcCCChHHHHH
Q 048751 518 EAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLV-----QMFAGGDLMGQAVD 592 (1004)
Q Consensus 518 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-----~~~~~~~~~~~a~~ 592 (1004)
+|+..|.+-++. .+.+...++.+..++ ..+.+. +... -++..+..+. +.+.....+. .
T Consensus 88 eA~~ay~~GL~~--d~~n~~L~~gl~~a~----~~~~~~-----~~~~---~~p~~~~~l~~~p~t~~~~~~~~~~---~ 150 (539)
T KOG0548|consen 88 EAILAYSEGLEK--DPSNKQLKTGLAQAY----LEDYAA-----DQLF---TKPYFHEKLANLPLTNYSLSDPAYV---K 150 (539)
T ss_pred HHHHHHHHHhhc--CCchHHHHHhHHHhh----hHHHHh-----hhhc---cCcHHHHHhhcChhhhhhhccHHHH---H
Confidence 999998887763 455566666666666 111111 1110 1111121111 1111111111 1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH-----HHHc-------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 593 LLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHE-----MRRA-------GVEPNEVVYGSLINGFAATGKVEEA 660 (1004)
Q Consensus 593 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A 660 (1004)
++..... .|+. +..|..-..+..|.-.+.. +... +..|. .......-..++..+-
T Consensus 151 ~l~~~~~---~p~~------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~d~~ee 217 (539)
T KOG0548|consen 151 ILEIIQK---NPTS------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC----KQEHNGFPIIEDNTEE 217 (539)
T ss_pred HHHHhhc---CcHh------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc----cccCCCCCccchhHHH
Confidence 1111111 1111 1111110011111111110 0000 11111 0000000000000000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048751 661 LQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREK 740 (1004)
Q Consensus 661 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (1004)
.+ ...-..-...+.++.-+..+++.|++-+....+.. -+..-++....+|...|.+.+.........+.
T Consensus 218 ~~---------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 218 RR---------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred HH---------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 00 00011224456667777778888888888877755 35556677777888888888888888777777
Q ss_pred CCCCHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048751 741 GQVDAVSF-------AAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLP 813 (1004)
Q Consensus 741 ~~~~~~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 813 (1004)
+.....-| ..++.+|.+.++++.|+..|.+.+.....|+..+ +....+++........- +.|
T Consensus 287 gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~--~~p 355 (539)
T KOG0548|consen 287 GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY--INP 355 (539)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh--hCh
Confidence 64333323 2345567778889999999988776544333221 22334444444443321 233
Q ss_pred Chh-hHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhh-hHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHH
Q 048751 814 DNG-TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASE-AIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIY 891 (1004)
Q Consensus 814 ~~~-~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~-~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 891 (1004)
... -...-...+.+.|++..|+..|.+++...|.+... ...+..|.+++.+..|++.+++.++.+ |.....|.-=+.
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGA 434 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHH
Confidence 322 22333556778899999999999988888776653 334556888999999999999999886 345667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 048751 892 AFKSSGKNDKALNTFMKMLDQGLEPDIVTCI-NLVGCYG 929 (1004)
Q Consensus 892 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~l~~~~~ 929 (1004)
++....+|++|++.|++.++ ..|+..-+. .+.++..
T Consensus 435 al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHH
Confidence 88888899999999999887 467544333 3444433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-07 Score=88.74 Aligned_cols=244 Identities=13% Similarity=0.093 Sum_probs=127.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048751 334 DLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIY--TCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGN 411 (1004)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 411 (1004)
..+.+++.+.+|+.+...|... |+...-..-+. .....+++..+..+.++....| +..+.+.......+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 3445556666666666555432 22211111111 1234566666666666654322 33344444455556677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCc----HHHHHHHHHhcCCHHHHHH
Q 048751 412 INAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHS----VPGVMKMYINEGLLHQAKI 487 (1004)
Q Consensus 412 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~l~~~~~~~g~~~~A~~ 487 (1004)
++.|++-|+...+.+--.....|+..+ +..+.|+++.|++...++++.|++-.+.. ....+.. ..+..-..
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv----rsvgNt~~ 234 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV----RSVGNTLV 234 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch----hcccchHH
Confidence 777777776666543333344555433 33456666777777777766665432211 0101100 00000001
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 048751 488 IFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGT 567 (1004)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 567 (1004)
+.... -..+++.-...+.+.|+++.|.+.+..|.-......|+++...+.-. --.+++.+..+-+.-+...++
T Consensus 235 lh~Sa------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 235 LHQSA------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred HHHHH------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 11100 12345556667778888888888877765444445566665554322 123445555555555555554
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 048751 568 WPDECTYNSLVQMFAGGDLMGQAVDLLAE 596 (1004)
Q Consensus 568 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 596 (1004)
. ...||..++-.||++.-++.|..++.+
T Consensus 308 f-P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 308 F-PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred C-ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3 456788888888888888888887765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-07 Score=88.61 Aligned_cols=206 Identities=13% Similarity=0.017 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 608 TFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYS 687 (1004)
Q Consensus 608 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 687 (1004)
+...|.-+|...|+...|..-+++.++.+ +-+..+|..+...|.+.|..+.|.+.|+....... -+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 34456677888999999999999888864 34477888888899999999999999998887653 35567888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 688 KIGCLEGAKQVYEKMKEMEGGP-DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
..|++++|...|++......-+ ...+|..+.-+..+.|+.+.|...|++..+..|..+.+...+.....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 9999999999999888754432 334777788888888999999999999999998888888999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhH
Q 048751 767 AAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTF 818 (1004)
Q Consensus 767 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 818 (1004)
.++.....+. ++..+....|+.--..|+.+.+.++=.++... .|...-+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 9988887766 78888777788888888888877766666542 4544433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-06 Score=94.13 Aligned_cols=306 Identities=12% Similarity=-0.013 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGV-EPNE-VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLI 683 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 683 (1004)
...|..+...+...|+.+.+...+....+... .++. .........+...|++++|.++++...+..+ .+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-h
Confidence 34555666666667777777666666544321 1121 2222234455677888899888888877532 33334332 2
Q ss_pred HHHH----HcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 684 KAYS----KIGCLEGAKQVYEKMKEMEGGPD-TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 684 ~~~~----~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
..+. ..+..+.+.+.+... ....|+ ......+...+...|++++|...+++..+..|.+...+..++.++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 2222 234555555555441 122233 344456677888999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCC-CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChhhH-H--HHHHHHHcCCCc
Q 048751 759 GMLDEAIDAAEEMKLSGLL-RD--VISYNQVMACFATNGQLRQCGELLHEMLTQKL-LPDNGTF-K--VLFTILKKGGFP 831 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~ 831 (1004)
|++++|+..+++....... |+ ...|..+...+...|++++|..++++...... .+..... . .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 9999999999998875321 23 23566788889999999999999999853321 1111111 1 111122222222
Q ss_pred HHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhc-cCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048751 832 IEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEA-YLDSFIYNVAIYAFKSSGKNDKALNTFMKML 910 (1004)
Q Consensus 832 ~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 910 (1004)
..+..+ +.... ......+ ........+.+.++...|+.++|..+++.+.
T Consensus 242 ~~~~~w-~~~~~-----------------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 242 DVGDRW-EDLAD-----------------------------YAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred ChHHHH-HHHHH-----------------------------HHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 111111 11000 0000000 0111222356778888999999999999887
Q ss_pred HCCCC-------C-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 911 DQGLE-------P-DIVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 911 ~~g~~-------p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
..... . ..........++...|+.++|.+.+....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 63211 1 22333444556678899998888887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-06 Score=86.78 Aligned_cols=296 Identities=13% Similarity=0.041 Sum_probs=169.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHH-HHHHHHHHcCCC
Q 048751 473 MKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEY-NVMIKAYGKSKL 551 (1004)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~ 551 (1004)
...+...|.+.+|+..|..++..+|.+-.++..-+..|...|+...|+.-+.++.+ .+||-..- -.-...+.+.|.
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhccc
Confidence 33444445555555555555555555555555555555555555555555554444 34443221 111223445555
Q ss_pred hhHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048751 552 YDKAFSLFKVMKNLGTWPDE--------------CTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYA 617 (1004)
Q Consensus 552 ~~~A~~l~~~m~~~g~~p~~--------------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 617 (1004)
+++|..-|+..++....-+. ......+..+...|+...|+.....+++.. +.|...|..-..+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHH
Confidence 55555555555544321000 111233444556677777777777777753 567777777777888
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHH---------HH
Q 048751 618 RLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIV----LTSL---------IK 684 (1004)
Q Consensus 618 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~l---------i~ 684 (1004)
..|++..|+.-++...+.. ..+..++-.+-..+...|+.+.++...++..+.+ ||... |..| +.
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888877776665542 3345555556666777777777777777777643 44321 1111 11
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTV---ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
.....++|.++++..+...+..+..... .+..+-.++...|++.+|++...++.+..|.|..++..-+.+|.-...|
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 2244566666666666666554432222 2334455666667777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHCC
Q 048751 762 DEAIDAAEEMKLSG 775 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~ 775 (1004)
++|+.-|+...+.+
T Consensus 358 D~AI~dye~A~e~n 371 (504)
T KOG0624|consen 358 DDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHhcC
Confidence 77777777776643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-06 Score=91.75 Aligned_cols=205 Identities=11% Similarity=-0.003 Sum_probs=114.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048751 497 GLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVV-EYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYN 575 (1004)
Q Consensus 497 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 575 (1004)
|.....+..++..+...|+.+++...+...........+.. ........+...|++++|..++++..+..+. +...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHH
Confidence 34455566666666666766666666555444322222221 1222233455677788888877777665322 222333
Q ss_pred H---HHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048751 576 S---LVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFA 652 (1004)
Q Consensus 576 ~---ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (1004)
. ........+....+.+.+.. .....+........+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 82 LHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred HhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 1 11111123444444444443 111112223344455566777778888888887777653 334566677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 653 ATGKVEEALQYFRMMRECGLW-ANQ--IVLTSLIKAYSKIGCLEGAKQVYEKMKE 704 (1004)
Q Consensus 653 ~~g~~~~A~~~~~~m~~~g~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~ 704 (1004)
..|++++|+.+++........ ++. ..|..+...+...|++++|..++++...
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 778888888777777654321 222 2344566677777777777777777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.94 E-value=0.00025 Score=80.34 Aligned_cols=221 Identities=16% Similarity=0.162 Sum_probs=141.2
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 048751 146 QKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRAL--GRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEA 223 (1004)
Q Consensus 146 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 223 (1004)
.+++..|+.-.+.+.++.+-.+ |..++.+| .|.|+.++|..+++.....+.. |..|..++..+|...|+.++|
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 3567778777777766533232 34444444 5789999999888887766533 888999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCC
Q 048751 224 LLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGG 303 (1004)
Q Consensus 224 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1004)
..+|++..+. .|+..-...+..+|++.+.+.+-.+.-- +++|.-
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~---------------------------------~LyK~~- 140 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAAL---------------------------------QLYKNF- 140 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHhC-
Confidence 9999999876 7787778888889998876654333221 112211
Q ss_pred CCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcC----------ChHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHH
Q 048751 304 RNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAG----------RLQDAANVFAEMLKSG-VAVDTITFNTMIYTCG 372 (1004)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~ 372 (1004)
|.++..+-+++..+.+.- -..-|.+.++.+.+.+ -.-+..-...-+..+.
T Consensus 141 -------------------pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~ 201 (932)
T KOG2053|consen 141 -------------------PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILE 201 (932)
T ss_pred -------------------CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHH
Confidence 222222222333322211 1234556666666653 1112222222233445
Q ss_pred ccCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048751 373 SHGNLSEAEALFC-MMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVG 426 (1004)
Q Consensus 373 ~~g~~~~A~~l~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 426 (1004)
..|++++|.+++. ...+.-..-+...-+--+..+...+++.+-.++-.++...|
T Consensus 202 ~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 202 LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 6788999999984 44443333344555667788888899999999888888876
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=101.04 Aligned_cols=258 Identities=16% Similarity=0.174 Sum_probs=156.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 687 SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
.+.|++.+|.-.|+..++.++. +..+|..|.......++-..|+..+++..+..|.+..+...|+-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4455555555555555554433 445555555555555555555555555555555555555555555665555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccC
Q 048751 767 AAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVK 846 (1004)
Q Consensus 767 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 846 (1004)
+++.-+...+ | |..+..+ ...+++.. .+-.++...+..+. ++|-++....+
T Consensus 375 ~L~~Wi~~~p-~----y~~l~~a-~~~~~~~~----------~~s~~~~~~l~~i~-------------~~fLeaa~~~~ 425 (579)
T KOG1125|consen 375 MLDKWIRNKP-K----YVHLVSA-GENEDFEN----------TKSFLDSSHLAHIQ-------------ELFLEAARQLP 425 (579)
T ss_pred HHHHHHHhCc-c----chhcccc-CccccccC----------CcCCCCHHHHHHHH-------------HHHHHHHHhCC
Confidence 5555544221 0 0000000 00000000 00112222222222 22222222222
Q ss_pred --Cchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 048751 847 --PYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCI 922 (1004)
Q Consensus 847 --~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~ 922 (1004)
.++. ...++-+|...|.+++|+.+|+.++... |.|...||-|+..++...+.++|+..|.++++ +.|+ +...-
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~Ry 502 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRY 502 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeeh
Confidence 2222 4567778888899999999999998886 55899999999999999999999999999998 7997 44777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH---cC----CCC--CcHHHHHHHHHHHHhcCChhHHHHHHH
Q 048751 923 NLVGCYGKAGLVEGVKRIHSQLK---YG----KME--PNENLFKAVIDAYRNANREDLADLACQ 977 (1004)
Q Consensus 923 ~l~~~~~~~g~~~~A~~~~~~~~---~~----~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~ 977 (1004)
.|.-+|...|.+++|.+.+-.+. .. .-. ++..+|.+|-.++.-.++.|.+..+..
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 88889999999998888875443 21 111 234699999989988898886655543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.00029 Score=79.77 Aligned_cols=161 Identities=16% Similarity=0.080 Sum_probs=93.9
Q ss_pred HHHHHHHcCCCc---HHHHHHHHhHhhccCCchhh-hHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHh
Q 048751 820 VLFTILKKGGFP---IEAVKQLQSSYQEVKPYASE-AIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKS 895 (1004)
Q Consensus 820 ~l~~~~~~~g~~---~~A~~~l~~~~~~~~~~~~~-~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 895 (1004)
.+++.+.+.++. -+|+-+++..+...+...-. ..+..+|...|-...|.+.|+.+--+....|...|. +..-+..
T Consensus 441 ~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t 519 (932)
T KOG2053|consen 441 HLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAET 519 (932)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHh
Confidence 444555555543 35666666666665554443 333456777788888888888776665555555443 2345566
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHH---HHHHcCCCCCcHHHHHHHHHHHHhcCChhH
Q 048751 896 SGKNDKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKRIH---SQLKYGKMEPNENLFKAVIDAYRNANREDL 971 (1004)
Q Consensus 896 ~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 971 (1004)
.|++..|...++..... +.-+ ..+-..+.- ..+.|.+.+..++. +++..........+-+..++.+...++.++
T Consensus 520 ~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~-AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q 597 (932)
T KOG2053|consen 520 SGRSSFASNTFNEHLKF-YDSSLKETPEYIAL-AYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQ 597 (932)
T ss_pred cccchhHHHHHHHHHHH-HhhhhhhhHHHHHH-HHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 78888888877776652 1111 122233332 34667776665554 333221111223556677888888898888
Q ss_pred HHHHHHHHHhhc
Q 048751 972 ADLACQEMRTAF 983 (1004)
Q Consensus 972 A~~~~~~m~~~~ 983 (1004)
=...+..|...|
T Consensus 598 ~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 598 LLKLLESMKLPP 609 (932)
T ss_pred HHHHHhccccCc
Confidence 888888887433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.0003 Score=75.04 Aligned_cols=439 Identities=12% Similarity=0.127 Sum_probs=244.3
Q ss_pred CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 048751 319 SVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKT 398 (1004)
Q Consensus 319 ~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 398 (1004)
....|.|..+|+.||+-+... .++++.+.++++... ++-....|..-|....+..+++..+++|.+.+..- .+...
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDL 88 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDL 88 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhH
Confidence 455689999999999988777 999999999999864 22345677888888889999999999999988763 35666
Q ss_pred HHHHHHHHHhc-CCHHH----HHHHHHHHH-HcCCCCCH-HHHHHHHHHHH---HcC------CHHHHHHHHHHHHhCCC
Q 048751 399 YNILLSLYADV-GNINA----ALRYYWKIR-EVGLFPDS-VTQRAILHILC---QRN------MVQEAEAVIIEMEKCGL 462 (1004)
Q Consensus 399 ~~~li~~~~~~-g~~~~----A~~~~~~m~-~~g~~p~~-~~~~~li~~~~---~~g------~~~~A~~~~~~m~~~g~ 462 (1004)
|...++.--+. |+... -.+.|+-.. +.|+.+-. ..|+..+.-+- ..| +.+...++++++.....
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 66666543322 23222 223333333 33433322 23444443221 122 23333344444432211
Q ss_pred CCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHH
Q 048751 463 HIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVM 542 (1004)
Q Consensus 463 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 542 (1004)
. .+..+=+-| ..++..+... +...+ .--+...+..|.++++++ ..+
T Consensus 169 ~----nlEkLW~DY---~~fE~~IN~~------------tarK~--i~e~s~~Ym~AR~~~qel-------------~~l 214 (656)
T KOG1914|consen 169 H----NLEKLWKDY---EAFEQEINII------------TARKF--IGERSPEYMNARRVYQEL-------------QNL 214 (656)
T ss_pred c----cHHHHHHHH---HHHHHHHHHH------------HHHHH--HHhhCHHHHHHHHHHHHH-------------HHH
Confidence 0 000000000 0011110000 00000 000112233344444332 223
Q ss_pred HHHHHcC-------CChhH--HHHHHHHHHH---C-CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHH-HHhCCCCCCHH
Q 048751 543 IKAYGKS-------KLYDK--AFSLFKVMKN---L-GTW-PDECTYNSLVQMFAGGDLMGQAVDLLAE-MQGAGFKPQCL 607 (1004)
Q Consensus 543 i~~~~~~-------g~~~~--A~~l~~~m~~---~-g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~-m~~~g~~~~~~ 607 (1004)
+.++.+. |--++ +++++....+ . ++. -+..... ....-.++. |+-.+..|+..
T Consensus 215 t~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiW 282 (656)
T KOG1914|consen 215 TRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIW 282 (656)
T ss_pred HhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHH
Confidence 3333221 11111 1122211111 1 111 0000000 000011111 11112222221
Q ss_pred HH-----HHHHHHHHHcCC-------HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Q 048751 608 TF-----SSVIAAYARLGQ-------LSNAVDLFHEMRRAGVEPNEVVYGSLINGFAAT---GKVEEALQYFRMMRECGL 672 (1004)
Q Consensus 608 ~~-----~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~ 672 (1004)
.. ...-+.+.+.|+ .+++..+++.....-..-+..+|..+..-=... .+.+...++++++...-.
T Consensus 283 y~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~ 362 (656)
T KOG1914|consen 283 YDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIED 362 (656)
T ss_pred HHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhc
Confidence 11 011123334444 344555555544322222334444333221111 135566667776654322
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 048751 673 WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGP-DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAM 751 (1004)
Q Consensus 673 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 751 (1004)
.--..+|..+++.-.+..-++.|..+|.++.+.+..+ ++.++++++.-||. ++.+-|.++|+.-.+..+.++......
T Consensus 363 ~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~Y 441 (656)
T KOG1914|consen 363 IDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKY 441 (656)
T ss_pred cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHH
Confidence 2233578888888888899999999999999988877 77788888887765 789999999999999989999988999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 752 MYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+.-+...++-..|..+|++.+..++.+| ...|..++..=..-|+..-++++-+++..
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999999999866666 57899999988999999999998888754
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.2e-07 Score=94.99 Aligned_cols=218 Identities=13% Similarity=0.065 Sum_probs=138.9
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 583 GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQ 662 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 662 (1004)
+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.+ +-|......|.-.|...|.-..|+.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 3344444444444444432 3344455555555555555555555555555542 2234555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHH---------HHHHHcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 663 YFRMMRECGLWANQIVLTSLI---------KAYSKIGCLEGAKQVYEKM-KEMEGGPDTVASNTMISLYAELGMVTEAES 732 (1004)
Q Consensus 663 ~~~~m~~~g~~~~~~~~~~li---------~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (1004)
+++..+...++ . .|.... ..+.....+....++|-++ ...+..+|..+...|.-.|.-.|++++|..
T Consensus 375 ~L~~Wi~~~p~--y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 375 MLDKWIRNKPK--Y-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHhCcc--c-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 55555432210 0 000000 0111111233344444444 344445788888899999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 733 MFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
.|+.++...|.|...||.|+..+....+.++|+..|.++++ ++|+ +.+...|.-.|...|.+++|...|-+.+
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 5687 4566667788999999999999888764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.3e-05 Score=97.09 Aligned_cols=338 Identities=12% Similarity=-0.048 Sum_probs=176.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 503 LAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFA 582 (1004)
Q Consensus 503 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 582 (1004)
....+..+...|++.+|........+. ..-..............|+++.+..++..+.......+..........+.
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 344456677778888777665543220 00001111222334556777777776665421111111112223334445
Q ss_pred cCCChHHHHHHHHHHHhCC--C----CCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 048751 583 GGDLMGQAVDLLAEMQGAG--F----KPQC--LTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE----VVYGSLING 650 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~g--~----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~ 650 (1004)
..|+++++..++....+.- . .+.. .....+...+...|++++|...+++....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 6788888888887765421 0 1111 11222334455678888888888877653111121 234555666
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHH
Q 048751 651 FAATGKVEEALQYFRMMREC----GL-WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM----EGG--P-DTVASNTMI 718 (1004)
Q Consensus 651 ~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~ 718 (1004)
+...|++++|...+++.... |. .....++..+...+...|++++|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 77788888888888776532 11 011234455566677788888888877765442 111 1 122344555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHH
Q 048751 719 SLYAELGMVTEAESMFNDIREKG----QV-DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-RDVISY-----NQVM 787 (1004)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~-----~~l~ 787 (1004)
..+...|++++|...+++..... +. ....+..+...+...|++++|...++++...... .....+ ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 66667788888888877765532 11 2334555666777788888888777776542100 111111 1112
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHcCCCcHHHHHHHHhHhh
Q 048751 788 ACFATNGQLRQCGELLHEMLTQKLLPDNG---TFKVLFTILKKGGFPIEAVKQLQSSYQ 843 (1004)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~l~~~~~ 843 (1004)
..+...|+.+.|..++............. ....+..++...|+.++|...++++..
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445677777777766543211111100 122344445555666666655555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-05 Score=97.83 Aligned_cols=157 Identities=9% Similarity=-0.030 Sum_probs=70.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-----C----HHHHHHHHHHHH
Q 048751 441 LCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGL-----S----SKTLAAIIDVYA 511 (1004)
Q Consensus 441 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~----~~~~~~l~~~~~ 511 (1004)
+...|+++.+...+..+.......++.........+...|+++++...+......... + ......++..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3345666665555554421111122333334444555666777776666655321110 1 112223344455
Q ss_pred hcCCHHHHHHHHhhhhhhcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHH
Q 048751 512 EKGLWAEAETVFYGKRDLVGQKKS----VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTW---P--DECTYNSLVQMFA 582 (1004)
Q Consensus 512 ~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p--~~~t~~~ll~~~~ 582 (1004)
..|++++|...+++..... ...+ ...++.+...+...|++++|...+.+....... + ...++..+...+.
T Consensus 464 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5666666666665554321 1111 122344444455566666666665555432100 0 1122333344445
Q ss_pred cCCChHHHHHHHHHHH
Q 048751 583 GGDLMGQAVDLLAEMQ 598 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~ 598 (1004)
..|+++.|...+++..
T Consensus 543 ~~G~~~~A~~~~~~al 558 (903)
T PRK04841 543 AQGFLQAAYETQEKAF 558 (903)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.4e-06 Score=86.43 Aligned_cols=225 Identities=10% Similarity=0.085 Sum_probs=126.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH--HHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG-MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML--DEAI 765 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~ 765 (1004)
.++.++|+.+..++++..+. +..+|+.-..++...| .+++++..++++.+.+|.+..+|+....++.+.|+. ++++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 34556666666666654332 3334555555555555 456777777777777777766776666666666652 5566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhcc
Q 048751 766 DAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEV 845 (1004)
Q Consensus 766 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 845 (1004)
.+++++++... .|..+|+....++...|+++++++.+.++++.+... ...+.....++.+.|....
T Consensus 129 ~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-~sAW~~R~~vl~~~~~l~~------------ 194 (320)
T PLN02789 129 EFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-NSAWNQRYFVITRSPLLGG------------ 194 (320)
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-hhHHHHHHHHHHhcccccc------------
Confidence 66666666442 346666666666666677777777777776554332 2222222222222211000
Q ss_pred CCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCC-CHHH
Q 048751 846 KPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSS----GKNDKALNTFMKMLDQGLEP-DIVT 920 (1004)
Q Consensus 846 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~g~~p-d~~t 920 (1004)
.....++.++...+++... |.|..+|+.+...+... ++..+|.+.+.+..+ ..| ++..
T Consensus 195 --------------~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~a 257 (320)
T PLN02789 195 --------------LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFA 257 (320)
T ss_pred --------------ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHH
Confidence 0000123444555555554 44677777777777663 344567777777655 344 4556
Q ss_pred HHHHHHHHHhcC------------------ChhHHHHHHHHHH
Q 048751 921 CINLVGCYGKAG------------------LVEGVKRIHSQLK 945 (1004)
Q Consensus 921 ~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 945 (1004)
+..|++.++... ..++|.++++.+.
T Consensus 258 l~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 258 LSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 777777776532 2367888888773
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.9e-06 Score=86.21 Aligned_cols=223 Identities=14% Similarity=0.150 Sum_probs=155.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG-MLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQ 795 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 795 (1004)
+-..+...++.++|+.+.+++++..|.+..+|+....++...| ++++++..++++.+.+. .+..+|+.-...+.+.|+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCc
Confidence 3344556678889999999999999999999998888888888 57899999999888653 345567766555555554
Q ss_pred H--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHH
Q 048751 796 L--RQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCET 873 (1004)
Q Consensus 796 ~--~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~ 873 (1004)
. ++++.+++++++... -+...+. ..+.++...|+++++++.+++
T Consensus 122 ~~~~~el~~~~kal~~dp-kNy~AW~---------------------------------~R~w~l~~l~~~~eeL~~~~~ 167 (320)
T PLN02789 122 DAANKELEFTRKILSLDA-KNYHAWS---------------------------------HRQWVLRTLGGWEDELEYCHQ 167 (320)
T ss_pred hhhHHHHHHHHHHHHhCc-ccHHHHH---------------------------------HHHHHHHHhhhHHHHHHHHHH
Confidence 2 455555555543311 1111222 223445556677788888888
Q ss_pred HHhhhccCCchhHHHHHHHHHhc---CCh----HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc----CChhHHHHHH
Q 048751 874 LIKAEAYLDSFIYNVAIYAFKSS---GKN----DKALNTFMKMLDQGLEP-DIVTCINLVGCYGKA----GLVEGVKRIH 941 (1004)
Q Consensus 874 ~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~----g~~~~A~~~~ 941 (1004)
+++.++ .|..+|+....++.+. |.. ++++++..+++. ..| |...|..+...+... ++..+|.+++
T Consensus 168 ~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 168 LLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 888874 4788999998887765 323 578888878877 577 678899888888873 3456788888
Q ss_pred HHHHcCCCCCc-HHHHHHHHHHHHhcC------------------ChhHHHHHHHHH
Q 048751 942 SQLKYGKMEPN-ENLFKAVIDAYRNAN------------------REDLADLACQEM 979 (1004)
Q Consensus 942 ~~~~~~~~~p~-~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m 979 (1004)
..+.. ..|+ +.....|+++|.... ..++|.++++.|
T Consensus 245 ~~~~~--~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 245 LEVLS--KDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHhhc--ccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 87654 4565 557788999997642 236788888877
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.2e-07 Score=92.40 Aligned_cols=223 Identities=16% Similarity=0.165 Sum_probs=134.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 048751 538 EYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKP-QCLTFSSVIAAY 616 (1004)
Q Consensus 538 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~ 616 (1004)
...-+.+++...|+++.++ .++.... .|.......+...+...++-+.+..-+.......... +..........+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444556666677665433 2332222 4555555555444444344444444444433332222 222222223445
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCH
Q 048751 617 ARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK----IGCL 692 (1004)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~ 692 (1004)
...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+++
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence 5678888887777542 356666677788888888888888888887643 33 344455555432 2357
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML-DEAIDAAEEM 771 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 771 (1004)
.+|..+|+++.+ ...+++.+.+.++.+....|++++|.+++.+..+.+|.++.+...++.+....|+. +.+.+++.++
T Consensus 184 ~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 184 QDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 888888888765 34567778888888888888888888888888877788888888888888888877 5666777777
Q ss_pred HHC
Q 048751 772 KLS 774 (1004)
Q Consensus 772 ~~~ 774 (1004)
...
T Consensus 263 ~~~ 265 (290)
T PF04733_consen 263 KQS 265 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-06 Score=95.75 Aligned_cols=222 Identities=13% Similarity=0.073 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 603 KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSL 682 (1004)
Q Consensus 603 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 682 (1004)
+|--..-..+...+...|-...|..+|++.. .|...+.+|+..|+..+|..+..+..+. +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3444444455666666677777777776554 3555666677777777777666666652 3666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHH
Q 048751 683 IKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 683 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 762 (1004)
.+......-+++|.++.+.... .+-..+.....+.++++++.+.|+...+.+|....+|..+..+..+.++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 6666555556666666654322 122223333334567777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhH
Q 048751 763 EAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSS 841 (1004)
Q Consensus 763 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 841 (1004)
.|.+.|..... ..|| ...||.+-.+|.+.|+..+|...+.+..+.+ .-+...+........+-|..++|.+.+++.
T Consensus 537 ~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 77777777665 3355 4567777777777777777777777776665 444444444555556667777777766666
Q ss_pred hhcc
Q 048751 842 YQEV 845 (1004)
Q Consensus 842 ~~~~ 845 (1004)
....
T Consensus 614 l~~~ 617 (777)
T KOG1128|consen 614 LDLR 617 (777)
T ss_pred HHhh
Confidence 6543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.7e-07 Score=92.62 Aligned_cols=223 Identities=17% Similarity=0.151 Sum_probs=116.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 048751 609 FSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWA-NQIVLTSLIKAYS 687 (1004)
Q Consensus 609 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~ 687 (1004)
...+.+++...|+++.++ .++.... .|.......+...+...++-+.++.-+++.......+ +..........+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 344555666666655433 2332222 4554444444433333234444444443333222221 2222222223445
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--CCHHHHH
Q 048751 688 KIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM--GMLDEAI 765 (1004)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~ 765 (1004)
..|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+..++.+..+-.+..... +.+.+|.
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 567777777666532 24555556667777777777777777777766544444433333322223 3577788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcH-HHHHHHHhHhh
Q 048751 766 DAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPI-EAVKQLQSSYQ 843 (1004)
Q Consensus 766 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~l~~~~~ 843 (1004)
.+|+++.+. +.+++.+.+.+..++...|++++|.+++.+....+ +-+..++..++.+....|+.. .+.+++.+...
T Consensus 188 y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 188 YIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 888886654 34667777777777888888888888877765432 334556666666666677663 34444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8e-06 Score=89.87 Aligned_cols=216 Identities=14% Similarity=0.112 Sum_probs=179.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048751 573 TYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFA 652 (1004)
Q Consensus 573 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 652 (1004)
.-..+...+...|-...|..++++... |..+|.+|+..|+..+|..+..+..++ +|+...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 335566777888999999999988653 677899999999999999999888874 789999999998888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 653 ATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAES 732 (1004)
Q Consensus 653 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (1004)
...-+++|.++.+..... .-..+.......++++++.+.++.-.+... ....+|-.+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHH
Confidence 777789999988876442 112222223447899999999998777554 366788888888999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 733 MFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
.|.......|.+..+|+++..+|.+.|+-.+|...+.+..+.+ ..+...|...+-.....|.+++|++.++++.+
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999977 46666777777778899999999999999954
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0023 Score=68.60 Aligned_cols=212 Identities=12% Similarity=0.099 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 048751 552 YDKAFSLFKVMKNLGTWPDECTYNSLVQMFA---GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDL 628 (1004)
Q Consensus 552 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 628 (1004)
.+++..+++.....-..-+..+|..+...-- +.+..+....++++++..-...-..+|..+++.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3556666665544322234445554443222 2224666777777776643333335677888888888889999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 048751 629 FHEMRRAGVEP-NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG 707 (1004)
Q Consensus 629 ~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 707 (1004)
|.+..+.+..+ ++..+++++.-||. ++..-|.++|+.=... ..-++.--...++-+...++-..|..+|++....+.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999887777 78888999988875 6778899999865443 213344445667778888999999999999998755
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 048751 708 GPD--TVASNTMISLYAELGMVTEAESMFNDIREKGQVDA----VSFAAMMYLYKTMGMLDEAI 765 (1004)
Q Consensus 708 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 765 (1004)
.++ ..+|..+++--..-|+...+.++-++.....+.+. ..-..+++.|.-.+.+.--.
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 444 46899999999999999999999888877665221 23344556666666554333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.55 E-value=8e-06 Score=84.01 Aligned_cols=100 Identities=17% Similarity=0.101 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDA---VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV--ISYN 784 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~ 784 (1004)
....+..++..+.+.|++++|...|+++....|.++ .++..++.++...|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344555566666667777777777777666665543 35566666777777777777777777664321111 1344
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHC
Q 048751 785 QVMACFATN--------GQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 785 ~l~~~~~~~--------g~~~~A~~~~~~~~~~ 809 (1004)
.+..++... |++++|...++++.+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 444444433 5566666666666543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.2e-08 Score=62.55 Aligned_cols=32 Identities=41% Similarity=0.581 Sum_probs=21.5
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 199 GVLPTNNTYGMLVDVYGKAGLIKEALLWIKHM 230 (1004)
Q Consensus 199 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 230 (1004)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666666
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.2e-05 Score=78.37 Aligned_cols=157 Identities=12% Similarity=0.028 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 048751 674 ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMY 753 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 753 (1004)
|+...+...+.+......-..+..++.+..+ .-....+....-.+...|.+++|+..++.+....|.|+..+.....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~ 348 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGD 348 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4555555555544433333333333333222 1223334445556678899999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcH
Q 048751 754 LYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPI 832 (1004)
Q Consensus 754 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 832 (1004)
.+.+.++.++|.+.++++.... |+ ...+..+..++.+.|++.+|+.+++..... .+.|+..|..|..+|...|+..
T Consensus 349 i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 349 ILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchH
Confidence 9999999999999999999854 66 667788889999999999999999998654 5677888999999999888777
Q ss_pred HHHH
Q 048751 833 EAVK 836 (1004)
Q Consensus 833 ~A~~ 836 (1004)
+|..
T Consensus 426 ~a~~ 429 (484)
T COG4783 426 EALL 429 (484)
T ss_pred HHHH
Confidence 7654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.2e-05 Score=89.91 Aligned_cols=204 Identities=10% Similarity=0.050 Sum_probs=124.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhC-CC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048751 573 TYNSLVQMFAGGDLMGQAVDLLAEMQGA-GF---KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLI 648 (1004)
Q Consensus 573 t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 648 (1004)
.|-..+......++.+.|+++.++++.. ++ .--...|.++++.-..-|.-+...++|+++.+. .--...|..|.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHH
Confidence 4444555555555666666666555532 11 011234556666656666666666777776653 11234566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCH
Q 048751 649 NGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGG-PDTVASNTMISLYAELGMV 727 (1004)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 727 (1004)
..|.+.+++++|.++++.|.+. ..-...+|..++..+.+..+-+.|..++.++.+.-++ .........+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7777777777777777777654 2245566777777777777777777777766553322 1233444555566667777
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048751 728 TEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD 779 (1004)
Q Consensus 728 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 779 (1004)
+.++.+|+......|.-...|+..+..-.++|+.+.+..+|+++...++.|.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 7777777777777676777777777777777777777777777776665443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.1e-05 Score=80.85 Aligned_cols=185 Identities=9% Similarity=-0.017 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H
Q 048751 604 PQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN-E---VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQ--I 677 (1004)
Q Consensus 604 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~ 677 (1004)
.....+..+...+...|+++.|...|+++.... |+ . ..+..+..++...|++++|+..++.+.+....... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 344556666666777777777777777766542 32 1 35566666777777777777777777654321111 1
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 048751 678 VLTSLIKAYSKI--------GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFA 749 (1004)
Q Consensus 678 ~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 749 (1004)
++..+..++... |+.++|.+.++.+.+..+. +...+..+..... ..... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~-------------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRL-------------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHH-------------HHHHH
Confidence 333333444332 4455555555555543322 1111111111000 00000 00112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 750 AMMYLYKTMGMLDEAIDAAEEMKLSGL-LR-DVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 750 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
.++..|.+.|++++|+..+++..+... .| ....+..++.++...|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445566667777777777777665431 12 135666667777777777777776666643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.7e-05 Score=75.73 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=126.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
..+-..+...|+-+....+....... ...|......++....+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 56667777778877777777765543 22455666678888888999999999998888754 45888899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|+.++|..-|.+..+..+.++..++.|+..|.-.|+++.|..++......+. -|..+-..+.......|++++|.++..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999999999998888888899999999999999999999888887553 366667777778888889888887765
Q ss_pred HH
Q 048751 805 EM 806 (1004)
Q Consensus 805 ~~ 806 (1004)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 54
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-07 Score=61.08 Aligned_cols=32 Identities=38% Similarity=0.497 Sum_probs=14.9
Q ss_pred CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 048751 356 GVAVDTITFNTMIYTCGSHGNLSEAEALFCMM 387 (1004)
Q Consensus 356 g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m 387 (1004)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9e-05 Score=87.22 Aligned_cols=209 Identities=11% Similarity=0.055 Sum_probs=175.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048751 603 KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN-----EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQI 677 (1004)
Q Consensus 603 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 677 (1004)
+-+...|-..|.-....++.+.|.++.++.... +.+. ...|.++++.-..-|.-+...++|+++.+.. -...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 445667888888899999999999999998764 2222 3567888887777788888999999998852 2345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV--DAVSFAAMMYLY 755 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 755 (1004)
+|..|...|.+.+++++|.++++.|.+. +.....+|..+++.+.+.++-+.|..++.++.+.-|. ......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 7889999999999999999999999984 3467889999999999999999999999999988765 666777888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG 816 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 816 (1004)
.+.|+.+.+..+|+..+...+ .-...|+.+++.=.++|+.+.+..+|++.+..++.|...
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 999999999999999998542 346789999999999999999999999999988877543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4e-05 Score=75.29 Aligned_cols=150 Identities=11% Similarity=0.091 Sum_probs=104.1
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCL 692 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 692 (1004)
+..|...|+++.+....+.+.. |. ..+...++.++++..++...+... .+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCH
Confidence 3456777777765444322221 11 012235566777777777766543 5677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLY-AELGM--VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAE 769 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 769 (1004)
++|...+++..+..+. +...+..+..++ ...|+ .++|.+++++..+.+|.+..++..++..+...|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888776654 666677777653 56666 4888888888888888888888888888888888888888888
Q ss_pred HHHHCCC
Q 048751 770 EMKLSGL 776 (1004)
Q Consensus 770 ~~~~~~~ 776 (1004)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 8877543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.2e-05 Score=75.18 Aligned_cols=156 Identities=10% Similarity=0.047 Sum_probs=110.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 648 INGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMV 727 (1004)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 727 (1004)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+..+. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3467778887776444322221 10 0112255667777777777765543 777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 728 TEAESMFNDIREKGQVDAVSFAAMMYLY-KTMGM--LDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 728 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
++|...|++..+..|.+...+..++.++ ...|+ .++|..++++..+.+. .+..++..+...+...|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888888888888888888864 66676 4888888888888653 346778888888888888888888888
Q ss_pred HHHHCCCCCChhhH
Q 048751 805 EMLTQKLLPDNGTF 818 (1004)
Q Consensus 805 ~~~~~~~~p~~~~~ 818 (1004)
++++. .+|+...+
T Consensus 169 ~aL~l-~~~~~~r~ 181 (198)
T PRK10370 169 KVLDL-NSPRVNRT 181 (198)
T ss_pred HHHhh-CCCCccHH
Confidence 88764 34444333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.1e-05 Score=86.97 Aligned_cols=238 Identities=12% Similarity=0.083 Sum_probs=133.9
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 604 PQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE-VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSL 682 (1004)
Q Consensus 604 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 682 (1004)
.+...+..|+..|...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 34456677777777777777777777765554 4543 3333333355555554444333 22
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHH
Q 048751 683 IKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 683 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 762 (1004)
+.......++.-+..++..+...+ -+..++..++.+|-+.|+.++|..+++++.+.+|.|+.+.+.++..|... +++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 233333334433333444444322 23346667778888888888888888888888888888888888888887 888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHcCCCcHHHHHHHHhH
Q 048751 763 EAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPD-NGTFKVLFTILKKGGFPIEAVKQLQSS 841 (1004)
Q Consensus 763 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~l~~~ 841 (1004)
+|+.++.++... +...+++.++.++|.++... .|+ ...+..+.......-....+..++...
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 888877777652 45556777777777777654 222 222222222222221122222222221
Q ss_pred hhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHH
Q 048751 842 YQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFK 894 (1004)
Q Consensus 842 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 894 (1004)
. .-|...+++++++.+++.+++..+. |..+..-++.+|.
T Consensus 230 ~-------------~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 Y-------------EPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred H-------------HHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 1 1234445566666666666666533 5555555665554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.5e-05 Score=86.82 Aligned_cols=236 Identities=11% Similarity=0.089 Sum_probs=145.7
Q ss_pred CcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHH
Q 048751 467 HSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAY 546 (1004)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 546 (1004)
..+..++..+...+++++|.++.+......|.....+..++..+.+.++..++..+ .++...
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~~l~~~ 93 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL------------------NLIDSF 93 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh------------------hhhhhc
Confidence 34455555666666666666666666666666666666666677776665555443 233334
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 048751 547 GKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAV 626 (1004)
Q Consensus 547 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 626 (1004)
....++.-...+...|...+ -+...+..+..+|-+.|+.+++..+|+++++.. +-++.+.|.+...|... ++++|+
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 44444433333444444432 244567777788888888888888888888766 56677778888888777 888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Q 048751 627 DLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM- 705 (1004)
Q Consensus 627 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 705 (1004)
.++.+.... |...+++..+.++|.++....+ -+...+..+. +.+...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~----------------~ki~~~~ 217 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIE----------------RKVLGHR 217 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHH----------------HHHHhhh
Confidence 887776643 5556677777777777776532 1222222221 222111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 706 EGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 706 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
+..--..++.-+-..|....+|+++..+++.+.+..+.|..+...++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 112233344455566777777888888888888877777777777777766
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.9e-05 Score=72.97 Aligned_cols=161 Identities=15% Similarity=0.142 Sum_probs=131.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 610 SSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKI 689 (1004)
Q Consensus 610 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 689 (1004)
..+-..+...|+-+....+....... .+-|......++....+.|++..|+..+++...... +|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 55666777788888887777775543 234556666788888999999999999999987643 7888999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 690 GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAE 769 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 769 (1004)
|++++|..-|.+..+..+. ++...+.+.-.|.-.|+.+.|..++.......+.|..+-..+.......|++++|.++..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999999998886654 666777788888888999999999999998888899999999999999999999988776
Q ss_pred HHHH
Q 048751 770 EMKL 773 (1004)
Q Consensus 770 ~~~~ 773 (1004)
.-..
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 6543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00015 Score=84.53 Aligned_cols=132 Identities=11% Similarity=0.083 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1004)
+...+..|.....+.|.+++|..+++...+..+ -+......++..+.+.+++++|...+++.....+. +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 344445555555555555555555555554321 12333444444555555555555555555443332 3344444445
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 720 LYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
++.+.|++++|..+|+++...+|.+..++..++.++...|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555554444555555555555555555555555555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00019 Score=69.75 Aligned_cols=171 Identities=19% Similarity=0.212 Sum_probs=102.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 593 LLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGL 672 (1004)
Q Consensus 593 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 672 (1004)
+.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..+++.|.+.++.|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 33444443333333333333455777777887777766521 3333333344556667777777777777764
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 048751 673 WANQIVLTSLIKAYSK----IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSF 748 (1004)
Q Consensus 673 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 748 (1004)
.+..|.+.|..++.+ .+++.+|.-+|++|.+ ...|+..+.+..+.++...|++++|..+++....+.+.++.+.
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 355666666666643 3456777777777765 3456777777777777777777777777777777777777766
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHHHHH
Q 048751 749 AAMMYLYKTMGMLDEA-IDAAEEMKL 773 (1004)
Q Consensus 749 ~~l~~~~~~~g~~~~A-~~~~~~~~~ 773 (1004)
..++-+-...|.-.++ .+.+.+++.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 6666655555554333 344444444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0012 Score=67.56 Aligned_cols=307 Identities=18% Similarity=0.144 Sum_probs=171.7
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHH--HHH
Q 048751 643 VYGSLINGFAA--TGKVEEALQYFRMMRECGLWANQIVLTSLIKAY--SKIGCLEGAKQVYEKMKEMEGGPDTVA--SNT 716 (1004)
Q Consensus 643 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~ 716 (1004)
.|..|-.++.. .|+-..|.++-.+..+. +..|..-+..++.+- .-.|+++.|.+-|+.|.. .|.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHH
Confidence 35555555543 35555565555544322 233444444444332 345666777777766665 122211 112
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHHc
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG-LLRDVI--SYNQVMACFATN 793 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~--~~~~l~~~~~~~ 793 (1004)
|.-.-.+.|..+.|..+-+...+.-|.-.-.+...+...+..|+|+.|+++.+.-++.. +.++.. .-..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~- 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM- 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH-
Confidence 22222345666666666666666655555666666666666666666666665544321 222221 11111111100
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHH-HHHHHHHhhhHhhhhHHH
Q 048751 794 GQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAII-TSVYSVVGLNALALGTCE 872 (1004)
Q Consensus 794 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~~A~~~~~ 872 (1004)
-.-.-++..|.+.-.+..+..+......+. ...+...|+..++-.+++
T Consensus 239 -------------------------------s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 239 -------------------------------SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred -------------------------------HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 000122344444444555445554443333 345666667777777777
Q ss_pred HHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCC
Q 048751 873 TLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ-GLEPD-IVTCINLVGCYGKAGLVEGVKRIHSQLKYGKME 950 (1004)
Q Consensus 873 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 950 (1004)
.+.+..+-|+ . ...|....-.|.+++-+++..+. .++|| ......+..+-...|++..|..-.+.+. ...
T Consensus 288 ~aWK~ePHP~--i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--r~~ 359 (531)
T COG3898 288 TAWKAEPHPD--I----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA--REA 359 (531)
T ss_pred HHHhcCCChH--H----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh--hhC
Confidence 7777643332 2 23444444444555555555542 46774 6677788888888899988877776664 457
Q ss_pred CcHHHHHHHHHHHHhc-CChhHHHHHHHHHHhhcCCCCCCchhh
Q 048751 951 PNENLFKAVIDAYRNA-NREDLADLACQEMRTAFESPEHDDSEF 993 (1004)
Q Consensus 951 p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~ 993 (1004)
|....|..|.++=... |+..+++..+.+-...|.+|.-..|..
T Consensus 360 pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~adg~ 403 (531)
T COG3898 360 PRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTADGV 403 (531)
T ss_pred chhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccccCc
Confidence 8889998888887665 999999998888888888877766643
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00015 Score=84.64 Aligned_cols=135 Identities=10% Similarity=0.055 Sum_probs=122.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 048751 672 LWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAM 751 (1004)
Q Consensus 672 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 751 (1004)
...+...+..|.....+.|.+++|..+++.+.+..+. +......++.++.+.+++++|+..+++.....|.+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 4456888999999999999999999999999986544 556777889999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 752 MYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+.++.+.|++++|+.+|+++...+ |+ ..++..+..++-..|+.++|...|++..+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999844 55 789999999999999999999999999765
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00062 Score=66.30 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=89.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT- 757 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 757 (1004)
...-...|+..|++++|.+...... +......=+..+.+..+++-|++.+++|.+.. +..+.+.|+.++.+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~l 182 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKL 182 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHH
Confidence 3333445666777777776665411 22222233445556666777777777776542 33444444444433
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHH
Q 048751 758 ---MGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEA 834 (1004)
Q Consensus 758 ---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 834 (1004)
.+.+.+|.-+|++|-++- .|+..+.+....++...|++++|..++++.+.+ -..++.++..++..-...|...++
T Consensus 183 a~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-d~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-DAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCChHH
Confidence 345777777777776643 377777777777777777777777777777655 234566666666666666766665
Q ss_pred HHHH
Q 048751 835 VKQL 838 (1004)
Q Consensus 835 ~~~l 838 (1004)
..-+
T Consensus 261 ~~r~ 264 (299)
T KOG3081|consen 261 TERN 264 (299)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.7e-05 Score=71.34 Aligned_cols=95 Identities=13% Similarity=-0.076 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
+..+...+...|++++|...|+.+....+. +...|..+..++.+.|++++|...|+++.+..|.++.++..++.++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 334455555666666666666665554432 4555556666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHC
Q 048751 759 GMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~ 774 (1004)
|++++|+..|++.++.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00038 Score=73.87 Aligned_cols=111 Identities=11% Similarity=0.045 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAA 768 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 768 (1004)
.|++++|+..++.+++..+ -|+..+....+.+.+.++.++|.+.++++....|.....+..++.+|.+.|++.+|+.++
T Consensus 319 ~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L 397 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRIL 397 (484)
T ss_pred hcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHH
Confidence 3444444444444444222 233344444444444455555555555554444444444444445555555555555444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 769 EEMKLSGLLRDVISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 769 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
++...... .|+..|..|..+|...|+..+|..
T Consensus 398 ~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 398 NRYLFNDP-EDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHhhcCC-CCchHHHHHHHHHHHhCchHHHHH
Confidence 44444321 334445555555555544444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.6e-05 Score=70.14 Aligned_cols=124 Identities=10% Similarity=0.001 Sum_probs=94.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048751 627 DLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEME 706 (1004)
Q Consensus 627 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 706 (1004)
.+|++..+. .|+ .+..+...+...|++++|...|+......+ .+...+..+..++...|++++|...|+...+..
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455555543 343 345567777888888888888888887653 467788888888888888889998888888765
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 707 GGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 707 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
+. +...+..+..++.+.|++++|+..|+...+..|.++..|.....+..
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 43 77778888888888899999999999988888888888766655543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.001 Score=64.25 Aligned_cols=184 Identities=18% Similarity=0.190 Sum_probs=106.5
Q ss_pred CHhHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 621 QLSNAVDLFHEMRR---AG-VEPNEV-VYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGA 695 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~---~g-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 695 (1004)
+.++.++++.++.. .| ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-...+-..|.+++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 34455555544432 22 334432 34444455556666777777777766542 11222222222223445677777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 696 KQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
.++++.+.+.++ .|..++..-+.+.-..|+.-+|++-+....+..+.|..+|..+...|...|++++|.-.++++.-..
T Consensus 106 ~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 106 IEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 777777776553 3555666556666666777777777777777777777777777777777777777777777777643
Q ss_pred CCCC-HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 048751 776 LLRD-VISYNQVMACFATNG---QLRQCGELLHEMLT 808 (1004)
Q Consensus 776 ~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 808 (1004)
|- +..+..+...+.-.| +..-|.++|.+.++
T Consensus 185 --P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 185 --PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred --CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 43 334445555444333 34456666666654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00085 Score=64.83 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=132.3
Q ss_pred cCCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048751 654 TGKVEEALQYFRMMRE---CG-LWANQI-VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVT 728 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 728 (1004)
..+.++..+++..+.. .| ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 4567888888887753 33 445554 45666677788999999999999988754 334444444445567789999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 729 EAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 729 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+|+++++.+.+.+|.|..++-.-+.+...+|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988886 447899999999999999999999999999974
Q ss_pred CCCCC-ChhhHHHHHHHHHc
Q 048751 809 QKLLP-DNGTFKVLFTILKK 827 (1004)
Q Consensus 809 ~~~~p-~~~~~~~l~~~~~~ 827 (1004)
. .| ++..+..+...+..
T Consensus 183 ~--~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYT 200 (289)
T ss_pred c--CCCcHHHHHHHHHHHHH
Confidence 3 34 34445555555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.5e-05 Score=68.61 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
...+...+...|++++|.+.++.+...+.. +...+..+...+.+.|++++|...++...+.+|.+...+..++.+|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 333444444445555555555544443321 3444444445555555555555555555444444555555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 048751 759 GMLDEAIDAAEEMKL 773 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~ 773 (1004)
|++++|+..|++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00011 Score=67.85 Aligned_cols=118 Identities=13% Similarity=0.130 Sum_probs=93.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048751 698 VYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL 777 (1004)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 777 (1004)
.++.+...... +......++..+.+.|++++|...|+.+...+|.+...|..++.++...|++++|...+++..+.+.
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p- 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP- 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 34455544332 3455667778888999999999999999998899999999999999999999999999999887652
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 048751 778 RDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFK 819 (1004)
Q Consensus 778 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 819 (1004)
.+...+..+...+...|++++|...|++.++. .|+...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 45677888888999999999999999988764 45544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.032 Score=58.89 Aligned_cols=187 Identities=10% Similarity=0.111 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC---CCCCCHHHHHHH
Q 048751 540 NVMIKAYGKSKLYDKAFSLFKVMKNLG----TWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGA---GFKPQCLTFSSV 612 (1004)
Q Consensus 540 ~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~l 612 (1004)
+..+.++...|++.++..++++|...= ..-+..+|+.++-.+++ .+|-++.+. .+-|+ |.-+
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYem 200 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPD---YYEM 200 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChH---HHHH
Confidence 445566667777777777776665432 23566667665555443 233333221 22222 3333
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHc
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG--KVEEALQYFRMMRECGLWANQI-VLTSLIKAYSKI 689 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~ 689 (1004)
+-.|.+.=. .++.-.=..+.|......+++....-.. +..--+++++.....-+.|+.. +...|+..+..
T Consensus 201 ilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~- 273 (549)
T PF07079_consen 201 ILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS- 273 (549)
T ss_pred HHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc-
Confidence 444433211 1111000112344444444444333221 1122223333333333445432 33344444433
Q ss_pred CCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 048751 690 GCLEGAKQVYEKMKEMEGG----PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDA 745 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (1004)
+.+++..+.+.+....+. --..++..++....+.++...|-+.+..+.-.+|...
T Consensus 274 -~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~s 332 (549)
T PF07079_consen 274 -DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRIS 332 (549)
T ss_pred -ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcch
Confidence 445555555544332211 1223455666666777777777777776666555433
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0026 Score=65.93 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=89.0
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH------------
Q 048751 615 AYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLIN--GFAATGKVEEALQYFRMMRECGLWANQIVLT------------ 680 (1004)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~------------ 680 (1004)
++.-.|++++|...--...+.+ ..+. +..+++ ++--.++.+.|+..|++.+..+ |+.....
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 3344566666655554444422 1111 222222 2233455666666666665543 3322111
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 681 -SLIKAYSKIGCLEGAKQVYEKMKEMEG---GPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 681 -~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
.=.+-..+.|++..|.+.|.+.+...+ .++...|.....+..+.|+.++|+.-.+...+.++.-+..|..-+.++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 111233566777777777777765433 3444455555566667777777777777777776666666666777777
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 048751 757 TMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 757 ~~g~~~~A~~~~~~~~~~~ 775 (1004)
..++|++|++-+++..+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 7777777777777776643
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00048 Score=64.24 Aligned_cols=115 Identities=17% Similarity=0.061 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 048751 724 LGMVTEAESMFNDIREKGQVD---AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVMACFATNGQLRQ 798 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 798 (1004)
.++...+...++.+.+..|.+ ..+...++..+...|++++|...|+.+......|+ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 566666666666666665554 33444555666666666666666666666542222 2234445566666666666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHh
Q 048751 799 CGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQS 840 (1004)
Q Consensus 799 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~ 840 (1004)
|+..++..... ...........+++.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666543211 12222344455555555655555555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.021 Score=63.06 Aligned_cols=206 Identities=17% Similarity=0.208 Sum_probs=128.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 048751 393 SPDTKTYNILLSLYADVGNINAALRYYWKIREV-GLF--------PDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLH 463 (1004)
Q Consensus 393 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 463 (1004)
.|....|..|.......-.++-|...|-+.... |++ .+...-.+=|.+ --|++++|.+++-+|.+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 355566666665555555555555555443321 110 000111111222 2488999999998887653
Q ss_pred CCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHH
Q 048751 464 IDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDG--GLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNV 541 (1004)
Q Consensus 464 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 541 (1004)
..+..+.+.|++-...++++.-..+. .....++..++..+.....|++|.+.|..... -..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------~e~ 827 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----------TEN 827 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------hHh
Confidence 34667788888888888776543222 22245889999999999999999998876433 133
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 542 MIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQ 621 (1004)
Q Consensus 542 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 621 (1004)
.+.++.+...+++-..+...+. -+....-.+..++...|.-++|.+.|-+-.. | .+.+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHH
Confidence 5566666666665555544433 3555667788889999999988887644321 2 244667788888
Q ss_pred HhHHHHHHHHHH
Q 048751 622 LSNAVDLFHEMR 633 (1004)
Q Consensus 622 ~~~A~~~~~~m~ 633 (1004)
|.+|.++-++..
T Consensus 894 W~~avelaq~~~ 905 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHhcc
Confidence 988888876654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.1e-05 Score=52.47 Aligned_cols=33 Identities=52% Similarity=0.658 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 048751 206 TYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPD 238 (1004)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 238 (1004)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677777788888888888888888877777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.032 Score=61.64 Aligned_cols=154 Identities=16% Similarity=0.234 Sum_probs=91.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 048751 585 DLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN----EVVYGSLINGFAATGKVEEA 660 (1004)
Q Consensus 585 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A 660 (1004)
|.+++|+++|-+|-+.+ ..|..+.+.|+|-...++++.- |-..| ...|+.+...+.....+++|
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888877766542 2356667777776666655431 11111 35677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048751 661 LQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREK 740 (1004)
Q Consensus 661 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (1004)
.++|..-... ...+.++.+..++++-..+...+-+ +....-.+.+++.+.|.-++|.+.|-+-..
T Consensus 816 ~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~- 880 (1189)
T KOG2041|consen 816 AKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL- 880 (1189)
T ss_pred HHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC-
Confidence 7777654321 2345555555555555554443322 444555677777888887777776643221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 741 GQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 741 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
| ...+..|...++|.+|.++.++..
T Consensus 881 --p-----kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 881 --P-----KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred --c-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 123455666677777777666543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00062 Score=73.40 Aligned_cols=119 Identities=16% Similarity=0.223 Sum_probs=66.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
|+..+...++++.|..+++++.+.. |+. ...++..+...++-.+|.+++++.....|.+...+...+..+.+.+++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3344444555555555555555533 222 223455555555555666666666655555555555555666666666
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 762 DEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
+.|+.+.+++.+.. |+ ..+|..|..+|...|++++|+..++.+
T Consensus 251 ~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666666532 44 346666666666666666666666554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.1e-05 Score=52.42 Aligned_cols=33 Identities=55% Similarity=0.828 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVD 360 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 360 (1004)
+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.006 Score=63.35 Aligned_cols=290 Identities=16% Similarity=0.050 Sum_probs=141.1
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 048751 581 FAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN-EVVYGSLINGFAATGKVEE 659 (1004)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 659 (1004)
+.+..++..|+..+...++.. +.+...|..-...+...|++++|.--.+.-.+. .|. .......-.++...++..+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHHH
Confidence 334455566666666666653 333444555555555666666665555444332 222 2233333344444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 048751 660 ALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG-GPDTVASNTM-ISLYAELGMVTEAESMFNDI 737 (1004)
Q Consensus 660 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~ 737 (1004)
|.+.++ +...+ ....++..++....... +|.-..|..+ ..++.-.|++++|.+.--.+
T Consensus 136 A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 444444 11111 11122222222222222 1333333333 24556667777777777777
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHHHHcCCHHHHHHHHH
Q 048751 738 REKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYN-------------QVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 738 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------------~l~~~~~~~g~~~~A~~~~~ 804 (1004)
.+.++.+......-..++.-.++.+.|+..|++.+..+ |+...-. .=..-..+.|++.+|.+.|.
T Consensus 196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred HhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 77776666666555666667777777777777777644 5432211 11223345666666666666
Q ss_pred HHHHCCCCCC-----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhc
Q 048751 805 EMLTQKLLPD-----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEA 879 (1004)
Q Consensus 805 ~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~ 879 (1004)
+.+. +.|+ ...|.....+ ....|+..+|+..++.+++.++
T Consensus 274 eal~--idP~n~~~naklY~nra~v---------------------------------~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 274 EALN--IDPSNKKTNAKLYGNRALV---------------------------------NIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred Hhhc--CCccccchhHHHHHHhHhh---------------------------------hcccCCchhhhhhhhhhhhcCH
Confidence 6642 2232 2223222223 3344555555555555555531
Q ss_pred cCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 048751 880 YLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKA 931 (1004)
Q Consensus 880 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~ 931 (1004)
. -..+|..-+.++...++|++|.+-|++..+....+ +..++.-..-++-++
T Consensus 319 s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 319 S-YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS 370 (486)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 1 12233333445555566666666666665532223 233444444444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.057 Score=55.86 Aligned_cols=298 Identities=16% Similarity=0.111 Sum_probs=185.9
Q ss_pred HHHHHHHHHHH--cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHH
Q 048751 608 TFSSVIAAYAR--LGQLSNAVDLFHEMRRAGVEPNEVVYGSLING--FAATGKVEEALQYFRMMRECGLWANQI--VLTS 681 (1004)
Q Consensus 608 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~ 681 (1004)
.|..|-.++.. .|+-..|.++-.+..+. +..|....-.|+.+ -.-.|+++.|.+-|+.|... |... -+..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 47777777654 57888888877765432 23444444444443 33479999999999999873 3322 2333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHH--HHHHHHH--HH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQ--VDAV--SFAAMMY--LY 755 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~--~~~~l~~--~~ 755 (1004)
|.-.-.+.|..+.|...-+.....-.. -...+...+...+..|+|+.|+++++.-..... ++.. .-..|+. +.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333446789999999998887765443 456778899999999999999999998776542 2221 1111111 11
Q ss_pred H-hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHH
Q 048751 756 K-TMGMLDEAIDAAEEMKLSGLLRDV-ISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIE 833 (1004)
Q Consensus 756 ~-~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 833 (1004)
. -.-+...|...-.+..+ +.||. ..-..-..++.+.|+..++-.+++.+-+....|+ ... +....+.|+.
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gdt-- 310 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGDT-- 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCCc--
Confidence 1 12244455555555544 44663 2334455677778888888888877765533333 221 1122334432
Q ss_pred HHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048751 834 AVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQG 913 (1004)
Q Consensus 834 A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 913 (1004)
+++-+++ .+++.++ .+.+......+..+-...|++..|..--+...+
T Consensus 311 a~dRlkR------------------------------a~~L~sl-k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-- 357 (531)
T COG3898 311 ALDRLKR------------------------------AKKLESL-KPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-- 357 (531)
T ss_pred HHHHHHH------------------------------HHHHHhc-CccchHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence 2222222 1222222 244666777777888888999888888777766
Q ss_pred CCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHcCCCCC
Q 048751 914 LEPDIVTCINLVGCYGKA-GLVEGVKRIHSQLKYGKMEP 951 (1004)
Q Consensus 914 ~~pd~~t~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p 951 (1004)
..|-...|..|.+.-... |+-.++..++-+..+.+-+|
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 688888899998887655 99999999988776554444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00097 Score=62.18 Aligned_cols=115 Identities=11% Similarity=0.118 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPD--TVASNTMISLYAELGMVTEAESMFNDIREKGQVD---AVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 763 (1004)
.++...+...++.+.+....-. ....-.+...+...|++++|...|+.+....+.+ ..+...++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5556666666666555432210 1122234455666666666666666666655322 2244556666666677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 764 AIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
|+..++...... .....+......+.+.|++++|...|++
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 766665532211 2234555566666777777777766654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00068 Score=73.10 Aligned_cols=126 Identities=14% Similarity=0.149 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048751 643 VYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYA 722 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1004)
....|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++.+..+... .+......-+..|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34556677777899999999999999875 44 445578888888899999999999887543 36667777778899
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+.++++.|+++.+++.+..|.+..+|..|+.+|...|+++.|+..++.+..
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999999999999999999999999999999999998887754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0027 Score=58.23 Aligned_cols=137 Identities=8% Similarity=-0.035 Sum_probs=101.8
Q ss_pred hHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---
Q 048751 840 SSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP--- 916 (1004)
Q Consensus 840 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--- 916 (1004)
+.++..|...+...++.-+...|++.+|...|++.+.--...|....-.+..+....++...|...++.+-+. .|
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r 158 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFR 158 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccC
Confidence 3333334444455556667778888888888888877666678888888999999999999999999998874 24
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 917 DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMR 980 (1004)
Q Consensus 917 d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 980 (1004)
.+.+...+.+.+...|..++|+..|+.+.++ .|+...-..+...+.++|+.++|..-+..+.
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3445667778899999999999999988754 5776655556778889998888866555443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.7e-05 Score=50.29 Aligned_cols=33 Identities=36% Similarity=0.497 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048751 205 NTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFP 237 (1004)
Q Consensus 205 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 237 (1004)
.+|+.++.+|++.|+++.|.++|++|++.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0055 Score=64.52 Aligned_cols=92 Identities=11% Similarity=0.151 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHcC--CCCCc--HH
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLDQGLE-----PDIV-TCINLVGCYGKAGLVEGVKRIHSQLKYG--KMEPN--EN 954 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-----pd~~-t~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~ 954 (1004)
.+..++..+...|++++|+++|+++...-.. .+.. .+...+-++...|+...|.+.++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4566778889999999999999998864322 1221 3344444666788999999999887522 22222 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 048751 955 LFKAVIDAYRNANREDLADLACQ 977 (1004)
Q Consensus 955 ~~~~l~~~~~~~g~~~~A~~~~~ 977 (1004)
....|++++ +.|+.+...+.+.
T Consensus 237 ~~~~l~~A~-~~~D~e~f~~av~ 258 (282)
T PF14938_consen 237 FLEDLLEAY-EEGDVEAFTEAVA 258 (282)
T ss_dssp HHHHHHHHH-HTT-CCCHHHHCH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHH
Confidence 556667776 4466555544443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00092 Score=60.83 Aligned_cols=96 Identities=9% Similarity=-0.021 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT 792 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 792 (1004)
....+...+...|++++|.++|+.+...+|.+...|..|+.++...|++++|+..|.......+ .|+..+-.+..++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3445666777889999999999998888888899999999999999999999999998888663 457788888888899
Q ss_pred cCCHHHHHHHHHHHHHC
Q 048751 793 NGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 793 ~g~~~~A~~~~~~~~~~ 809 (1004)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999888887543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.8e-05 Score=49.85 Aligned_cols=33 Identities=39% Similarity=0.560 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 048751 327 STYNTLIDLYGKAGRLQDAANVFAEMLKSGVAV 359 (1004)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 359 (1004)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 357777777777777777777777777776665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=60.04 Aligned_cols=96 Identities=10% Similarity=-0.057 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
..-.+...+...|++++|..+|+.+....+. +..-|..|.-++-..|++++|+..|.......|.|+..+..++.++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3445556677889999999999988876654 556677788888899999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHC
Q 048751 758 MGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~~ 774 (1004)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00089 Score=56.95 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNG 794 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 794 (1004)
..++..+...|++++|...++.+.+..|.+...+..++.++...|++++|++.+++...... .+..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHH
Confidence 34445555566666666666666655555555556666666666666666666666555432 22345555555666666
Q ss_pred CHHHHHHHHHHHH
Q 048751 795 QLRQCGELLHEML 807 (1004)
Q Consensus 795 ~~~~A~~~~~~~~ 807 (1004)
++++|...+.+..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666665554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.13 Score=54.37 Aligned_cols=89 Identities=10% Similarity=0.177 Sum_probs=68.4
Q ss_pred CCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 048751 318 NSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTK 397 (1004)
Q Consensus 318 ~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 397 (1004)
+....|.|..+|-.||.-|...|.+++..+++++|..- ++-=...|..-+++-....++...+.+|.+.+...+ +..
T Consensus 34 rIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ld 110 (660)
T COG5107 34 RIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLD 110 (660)
T ss_pred HhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHh
Confidence 34567999999999999999999999999999999753 222334677777777778899999999999988744 456
Q ss_pred HHHHHHHHHHhc
Q 048751 398 TYNILLSLYADV 409 (1004)
Q Consensus 398 ~~~~li~~~~~~ 409 (1004)
.|...+..-.+.
T Consensus 111 LW~lYl~YIRr~ 122 (660)
T COG5107 111 LWMLYLEYIRRV 122 (660)
T ss_pred HHHHHHHHHHhh
Confidence 666666544443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0018 Score=57.99 Aligned_cols=95 Identities=12% Similarity=0.022 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVD---AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR--DVISYNQVMAC 789 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~ 789 (1004)
..++..+.+.|++++|.+.|+.+....|.+ ..++..++.++.+.|++++|+..++++....... ...++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 344445555555555555555555544332 2344455555555555555555555555432111 12344455555
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 048751 790 FATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+.+.|++++|...++++++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00016 Score=60.02 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 724 LGMVTEAESMFNDIREKGQV--DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
.|+++.|+.+++++.+..|. +...+..++.+|.+.|++++|+.++++ .+.+. .+......+..++.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666666666666666553 334455566666666666666666666 22111 122333344566666666666666
Q ss_pred HHHH
Q 048751 802 LLHE 805 (1004)
Q Consensus 802 ~~~~ 805 (1004)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00085 Score=66.90 Aligned_cols=95 Identities=20% Similarity=0.194 Sum_probs=51.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 687 SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
.+.+++.+|+..|.+.++..+. |.+.|..-..+|.+.|.++.|++-.+..+..+|....+|..|..+|...|++++|++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3445555555555555554332 444444445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHH
Q 048751 767 AAEEMKLSGLLRDVISYN 784 (1004)
Q Consensus 767 ~~~~~~~~~~~p~~~~~~ 784 (1004)
.|++.++ +.|+..+|.
T Consensus 171 aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHhhhc--cCCCcHHHH
Confidence 5555555 335544443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0013 Score=55.99 Aligned_cols=95 Identities=25% Similarity=0.313 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
+..+...+...|++++|...++.+.+.... +...+..+..++...|++++|.+.++......+.+..++..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 445556666777777777777777664432 3456666777777778888888888888877777777788888888888
Q ss_pred CCHHHHHHHHHHHHHC
Q 048751 759 GMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~ 774 (1004)
|++++|...+.+..+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 8888888888777653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0027 Score=56.93 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHH
Q 048751 681 SLIKAYSKIGCLEGAKQVYEKMKEMEGG--PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD---AVSFAAMMYLY 755 (1004)
Q Consensus 681 ~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 755 (1004)
.++..+.+.|++++|.+.+..+...... .....+..+..++.+.|++++|...|+.+....|.+ ..++..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444444555555544444432211 012233344445555555555555555554443321 33444455555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 048751 756 KTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~ 774 (1004)
.+.|++++|...++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0038 Score=60.22 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD--TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
.+..+...+...|++++|...+++..+....+. ...+..+..++.+.|++++|...+++.....|.+...+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445555556666666666666666655433222 245566666777777777777777777776666666676677777
Q ss_pred HhcCCHHHHH
Q 048751 756 KTMGMLDEAI 765 (1004)
Q Consensus 756 ~~~g~~~~A~ 765 (1004)
...|+...+.
T Consensus 117 ~~~g~~~~a~ 126 (172)
T PRK02603 117 HKRGEKAEEA 126 (172)
T ss_pred HHcCChHhHh
Confidence 6666644433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0023 Score=69.61 Aligned_cols=92 Identities=15% Similarity=-0.001 Sum_probs=66.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHH
Q 048751 683 IKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 683 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 762 (1004)
...+...|++++|++.|+++++.... +...|..+..+|.+.|++++|+..++++.+..|.+..+|..++.+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34455667777777777777765543 55666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHCC
Q 048751 763 EAIDAAEEMKLSG 775 (1004)
Q Consensus 763 ~A~~~~~~~~~~~ 775 (1004)
+|+..|++.++.+
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 7777777777643
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00012 Score=47.00 Aligned_cols=30 Identities=43% Similarity=0.613 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048751 206 TYGMLVDVYGKAGLIKEALLWIKHMKLRGI 235 (1004)
Q Consensus 206 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 235 (1004)
||++++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566777777777777777777777766653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.012 Score=59.79 Aligned_cols=198 Identities=10% Similarity=0.027 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSF---AAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVM 787 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 787 (1004)
...+-.....+.+.|++++|.+.|+.+....|.+.... ..++.++.+.+++++|+..+++..+..+.-...-|....
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 33333445556677888888888888888777665544 566778888888888888888888754322222333333
Q ss_pred HHHHH--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhH
Q 048751 788 ACFAT--NGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNA 865 (1004)
Q Consensus 788 ~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 865 (1004)
.+.+. .++ ..+.... .+.+. -.......+|++.+++.++..|...-. .
T Consensus 112 ~g~~~~~~~~-----~~~~~~~--~~~~~----------~rD~~~~~~A~~~~~~li~~yP~S~ya-------------~ 161 (243)
T PRK10866 112 RGLTNMALDD-----SALQGFF--GVDRS----------DRDPQHARAAFRDFSKLVRGYPNSQYT-------------T 161 (243)
T ss_pred HHHhhhhcch-----hhhhhcc--CCCcc----------ccCHHHHHHHHHHHHHHHHHCcCChhH-------------H
Confidence 33221 110 0000000 00000 000000123334444444444332110 0
Q ss_pred hhhh---HHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 048751 866 LALG---TCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ--GLEPDIVTCINLVGCYGKAGLVEGVKRI 940 (1004)
Q Consensus 866 ~A~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~l~~~~~~~g~~~~A~~~ 940 (1004)
+|.. .++..+.. --..++.-|.+.|++.-|+.-++.+++. +.......+..++.+|.+.|..++|..+
T Consensus 162 ~A~~rl~~l~~~la~-------~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 162 DATKRLVFLKDRLAK-------YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 1111 11111111 1124567788888888899988888874 2222466778888889899999988888
Q ss_pred HHHHH
Q 048751 941 HSQLK 945 (1004)
Q Consensus 941 ~~~~~ 945 (1004)
...+.
T Consensus 235 ~~~l~ 239 (243)
T PRK10866 235 AKIIA 239 (243)
T ss_pred HHHHh
Confidence 77663
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0015 Score=65.29 Aligned_cols=101 Identities=18% Similarity=0.231 Sum_probs=89.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 048751 719 SLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLR 797 (1004)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 797 (1004)
+-+.+.+++.+|+..|.++++..|.|++.|..-+.+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 34668899999999999999999999999999999999999999999999999884 366 679999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHH
Q 048751 798 QCGELLHEMLTQKLLPDNGTFKVLFT 823 (1004)
Q Consensus 798 ~A~~~~~~~~~~~~~p~~~~~~~l~~ 823 (1004)
+|.+.|++.++ +.|+..+|..-+.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 99999999874 6888887765443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0011 Score=68.26 Aligned_cols=270 Identities=17% Similarity=0.150 Sum_probs=143.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH--HHC--CC-CCCHHHHHHHH
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNE----VVYGSLINGFAATGKVEEALQYFRMM--REC--GL-WANQIVLTSLI 683 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m--~~~--g~-~~~~~~~~~li 683 (1004)
..-+|+.|+....+.+|+...+.| ..|. .+|..|.++|.-.+++++|+++...= ... |- .-....-..|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 345788999999999999998877 3343 45777888888888888888764321 111 10 01233445566
Q ss_pred HHHHHcCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKM----KEMEGG-PDTVASNTMISLYAELGM--------------------VTEAESMFNDIR 738 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~ 738 (1004)
+.+-..|.+++|.-...+- .+.|-. ....++..+...|...|+ ++.|.++|..=.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 6666777888877655432 222211 122344456666665542 122222222211
Q ss_pred Hc----C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 739 EK----G--QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK----LSGLLR-DVISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 739 ~~----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
+. + -....+|..|.+.|.-.|+++.|+...+.=+ +.|-+. ....+..+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 11 0 0122234455555555566666655443322 112111 12344555555555566666665555432
Q ss_pred HCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhcc-----CC
Q 048751 808 TQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAY-----LD 882 (1004)
Q Consensus 808 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~-----~~ 882 (1004)
...+.. ..+..+| .+...++..|.....+.+|+.++.+-++.... -.
T Consensus 263 ~LAiel--------------g~r~vEA--------------QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 263 NLAIEL--------------GNRTVEA--------------QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred HHHHHh--------------cchhHHH--------------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 110000 0000111 11223344455666666777766655443221 13
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 883 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
..++.+|+.+|...|..++|+.+.+.-++
T Consensus 315 ~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 315 LRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45789999999999999999988877765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0061 Score=53.66 Aligned_cols=90 Identities=19% Similarity=0.097 Sum_probs=48.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhc
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEMEGGPD--TVASNTMISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTM 758 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 758 (1004)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++......|. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455666666666666655554332 223444555566666666666666666655443 333444444555666
Q ss_pred CCHHHHHHHHHHHHH
Q 048751 759 GMLDEAIDAAEEMKL 773 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~ 773 (1004)
|+.++|+..+-....
T Consensus 89 gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 89 GRPKEALEWLLEALA 103 (120)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666555443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0029 Score=68.81 Aligned_cols=103 Identities=12% Similarity=0.034 Sum_probs=88.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQL 796 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 796 (1004)
-+..+...|++++|+..|+++.+..|.+...|..++.+|...|++++|+..++++++... .+...|..+..+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 356677889999999999999999999999999999999999999999999999998652 3477889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHH
Q 048751 797 RQCGELLHEMLTQKLLPDNGTFKVLF 822 (1004)
Q Consensus 797 ~~A~~~~~~~~~~~~~p~~~~~~~l~ 822 (1004)
++|+..|++.+.. .|+.......+
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 9999999999864 55555444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00035 Score=57.91 Aligned_cols=81 Identities=22% Similarity=0.287 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGG-PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDA 767 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 767 (1004)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.++.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777888888877765542 2344455577778888888888888877 444444555555667778888888888877
Q ss_pred HHH
Q 048751 768 AEE 770 (1004)
Q Consensus 768 ~~~ 770 (1004)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00016 Score=46.42 Aligned_cols=30 Identities=47% Similarity=0.790 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGV 357 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 357 (1004)
+||.|+++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0019 Score=54.29 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 048751 414 AALRYYWKIREVGLFPDSVTQRAILHILCQ 443 (1004)
Q Consensus 414 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 443 (1004)
..+.+|+.|...+++|+..+|+.++..+.+
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 445556666666666666666666665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.03 Score=57.00 Aligned_cols=204 Identities=13% Similarity=0.081 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh--hHH
Q 048751 744 DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV--ISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG--TFK 819 (1004)
Q Consensus 744 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~ 819 (1004)
++..+...+..+...|++++|++.|+++....+.+.. .....++.++.+.+++++|...+++.++. .|+.. -+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHH
Confidence 4555556677778899999999999999985532221 12345678889999999999999999765 33322 222
Q ss_pred HHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCCh
Q 048751 820 VLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKN 899 (1004)
Q Consensus 820 ~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 899 (1004)
....+++.... ....+......... ........+|++.++++++.-|. + .-.
T Consensus 109 ~Y~~g~~~~~~---~~~~~~~~~~~~~~----------~rD~~~~~~A~~~~~~li~~yP~-S--------------~ya 160 (243)
T PRK10866 109 LYMRGLTNMAL---DDSALQGFFGVDRS----------DRDPQHARAAFRDFSKLVRGYPN-S--------------QYT 160 (243)
T ss_pred HHHHHHhhhhc---chhhhhhccCCCcc----------ccCHHHHHHHHHHHHHHHHHCcC-C--------------hhH
Confidence 22222211000 00000000000000 00112233577777877777432 2 224
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-cCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHH
Q 048751 900 DKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLK-YGKMEPN-ENLFKAVIDAYRNANREDLADLACQ 977 (1004)
Q Consensus 900 ~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 977 (1004)
.+|...+..+.+. + ...-..+..-|.+.|.+..|..-++.+. .++-.|. .+....++++|.+.|..++|.+..+
T Consensus 161 ~~A~~rl~~l~~~-l---a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 161 TDATKRLVFLKDR-L---AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHH-H---HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4554444444321 0 0111255666888999988888887774 4444443 4567788999999999999999888
Q ss_pred HHHh
Q 048751 978 EMRT 981 (1004)
Q Consensus 978 ~m~~ 981 (1004)
.+..
T Consensus 237 ~l~~ 240 (243)
T PRK10866 237 IIAA 240 (243)
T ss_pred HHhc
Confidence 7654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.011 Score=62.26 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=51.6
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----CH
Q 048751 329 YNTLIDLYGKA-GRLQDAANVFAEMLKS----GVAVD--TITFNTMIYTCGSHGNLSEAEALFCMMEESRISP-----DT 396 (1004)
Q Consensus 329 ~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~ 396 (1004)
+..+...|-+. |++++|++.|++..+. | .+. ...+..+...+.+.|++++|.++|+++...-... ++
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 44455566666 7777777777766542 2 111 2244556666777777777777777776543221 11
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 397 K-TYNILLSLYADVGNINAALRYYWKIRE 424 (1004)
Q Consensus 397 ~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 424 (1004)
. .|...+-++...||...|...|++...
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 222333355556777777777777664
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0043 Score=59.62 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGP--DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
..+..+...+...|++++|...++........+ ...++..+..++...|++++|+..+++.....|.....+..++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 344555555566666677766666665543222 123566666777777777777777777776666666666666666
Q ss_pred HH-------hcCCHHHHHHHHH
Q 048751 755 YK-------TMGMLDEAIDAAE 769 (1004)
Q Consensus 755 ~~-------~~g~~~~A~~~~~ 769 (1004)
+. ..|++++|+..++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 66 5555554443333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.012 Score=66.88 Aligned_cols=66 Identities=8% Similarity=0.024 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCc
Q 048751 781 ISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPY 848 (1004)
Q Consensus 781 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 848 (1004)
..|..+.-.....|++++|...+++.+..+ |+...|..+...+...|++++|.+.++++++..|..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 344444334444455555555555554332 344444444445555555555555555554444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.054 Score=50.00 Aligned_cols=131 Identities=13% Similarity=0.036 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHH
Q 048751 674 ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV--DAVSFAAM 751 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l 751 (1004)
|+...-..|..++.+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+..|. .+.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 5555555666666666777777777766665444445555666666666666666666666666665531 33344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 752 MYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
...|...|++.+|...|+.....- |+...-......+.++|+.++|..-+..+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 566666666666666666666532 44443333344455666655555444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0009 Score=52.20 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=42.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
+...+.+.|++++|++.|+.+.+..|.+..++..++.++...|++++|+..|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45566777777777777777777777777777777777777777777777777776643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=52.38 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG-MLDEAIDAAEEMKLS 774 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 774 (1004)
+..+|..+...+...|++++|+..|++..+.+|.++.+|..++.+|...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45667778888888888888888888888888888888888888888888 688888888887763
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0039 Score=67.60 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=98.0
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 048751 567 TWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGA--GFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVY 644 (1004)
Q Consensus 567 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 644 (1004)
...+......+++.+....+++.+..++-+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3346677777888888888888888888887764 22233345568999999999999999999998999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKI 689 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 689 (1004)
|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999998888777767777777666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0011 Score=52.27 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=50.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQV 786 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 786 (1004)
.+.|++++|+++|+++....|.+..++..++.+|.+.|++++|..+++++.... |+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHH
Confidence 467888889999999888888888888888899999999999998888888754 664444444
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0042 Score=67.34 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=98.0
Q ss_pred CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048751 356 GVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEES--RISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVT 433 (1004)
Q Consensus 356 g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 433 (1004)
+...+......+++.+....+++++..++-..... ...--..|..++|+.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556777778888888888889999888887654 1212234567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhc
Q 048751 434 QRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINE 479 (1004)
Q Consensus 434 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 479 (1004)
++.|+..+.+.|++..|.++..+|...+...++.+....+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998877766666655555554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0034 Score=52.77 Aligned_cols=82 Identities=13% Similarity=0.242 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHCCCCCCHH
Q 048751 327 STYNTLIDLYGKAGRLQDAANVFAEMLKSGV-AVDTITFNTMIYTCGSHG--------NLSEAEALFCMMEESRISPDTK 397 (1004)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~ 397 (1004)
.+-...|.-+...+++...-.+|+.++..|+ -|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3445667777788999999999999999999 999999999998877543 3556788999999999999999
Q ss_pred HHHHHHHHHHh
Q 048751 398 TYNILLSLYAD 408 (1004)
Q Consensus 398 ~~~~li~~~~~ 408 (1004)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.2 Score=49.10 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----H
Q 048751 643 VYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNT-----M 717 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----l 717 (1004)
..+.+++++.-.|.+.-...++.+.++...+.++.....|...-.+.|+.+.|...|+...+.....+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34567777777888888888888888877777888888888888899999999999887665433334333333 3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 718 ISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQV 786 (1004)
Q Consensus 718 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 786 (1004)
...|.-.+++.+|...|.++...++.++...|.-+-++.-.|+..+|++.++.|++.- |...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhH
Confidence 3455666788888899999998888888888888888888899999999999998854 554444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0095 Score=57.45 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048751 322 KPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVD--TITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTY 399 (1004)
Q Consensus 322 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 399 (1004)
.|.....|..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+... -+...+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 109 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSAL 109 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHH
Confidence 455567788999999999999999999999987643332 35778888899999999999999999987632 245677
Q ss_pred HHHHHHHHhcCCHHHHH
Q 048751 400 NILLSLYADVGNINAAL 416 (1004)
Q Consensus 400 ~~li~~~~~~g~~~~A~ 416 (1004)
..+...+...|+...+.
T Consensus 110 ~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHHcCChHhHh
Confidence 77788888877754443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0099 Score=62.24 Aligned_cols=130 Identities=11% Similarity=0.066 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE-LGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
.+|..+++...+.+..+.|..+|.++.+.+. .+..+|...+..-.+ .++.+.|.++|+...+..+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4677788888888888888888888875432 244455555555344 45666689999988888888888888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDV----ISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
...|+.+.|..+|++.... + |.. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999888865 3 333 47888888888888888888888888653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0076 Score=57.92 Aligned_cols=94 Identities=7% Similarity=-0.062 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQV 786 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 786 (1004)
...|..++..+...|++++|+..|++.....+. ...+|..++.++...|++++|+..+++..... |+ ..++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 445677778888899999999999999876543 34578899999999999999999999988753 43 4556666
Q ss_pred HHHHH-------HcCCHHHHHHHHHHH
Q 048751 787 MACFA-------TNGQLRQCGELLHEM 806 (1004)
Q Consensus 787 ~~~~~-------~~g~~~~A~~~~~~~ 806 (1004)
...+. ..|++++|...+.+.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 66666 666766555555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.006 Score=63.85 Aligned_cols=132 Identities=13% Similarity=0.029 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHh-cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 048751 433 TQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYIN-EGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYA 511 (1004)
Q Consensus 433 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 511 (1004)
+|-.+++..-+.+..+.|..+|.+..+.+ ......|...+.+-.. .++.+.|..+|+..++..+.+...+...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555555555555666666666665322 2233444444444223 455556777777777777777788888888888
Q ss_pred hcCCHHHHHHHHhhhhhhcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 048751 512 EKGLWAEAETVFYGKRDLVGQKK-SVVEYNVMIKAYGKSKLYDKAFSLFKVMKNL 565 (1004)
Q Consensus 512 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 565 (1004)
+.|+.+.|..+|++......... ....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888766433333 3457888888888888888888888777763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.029 Score=63.82 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 728 TEAESMFNDIREK--GQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 728 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
..+.+..++.... .+.++.+|..++......|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443332 35566777777777777788888888888888754 6777788888888888888888888888
Q ss_pred HHHCCCCCChhhHH
Q 048751 806 MLTQKLLPDNGTFK 819 (1004)
Q Consensus 806 ~~~~~~~p~~~~~~ 819 (1004)
... +.|...||.
T Consensus 479 A~~--L~P~~pt~~ 490 (517)
T PRK10153 479 AFN--LRPGENTLY 490 (517)
T ss_pred HHh--cCCCCchHH
Confidence 764 455555544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.01 Score=61.42 Aligned_cols=133 Identities=17% Similarity=0.067 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH----cC-CCCCH
Q 048751 572 CTYNSLVQMFAGGDLMGQAVDLLAEMQ----GAGF-KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRR----AG-VEPNE 641 (1004)
Q Consensus 572 ~t~~~ll~~~~~~~~~~~a~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~ 641 (1004)
..|..|...|.-.|+++.|+...+.-+ +-|- ......+..+.+++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345556666666666666665544322 1221 12234566677777777777777776665422 11 11123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRE----C-GLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKE 704 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 704 (1004)
.+.-.|.+.|.-..+++.|+.++.+-.. . +..-....+.+|..++...|..++|..+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444566666666677777776654321 1 1112344666777777777777777766665443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.029 Score=56.73 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHH
Q 048751 674 ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG---MVTEAESMFNDIREKGQVDAVSFAA 750 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~ 750 (1004)
-|...|..|...|...|+.+.|...|.+..+...+ +...+..+..++.... +..++..+|+++...+|.|+.+...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 45666777777777777777777777766665432 5555555555444322 2556677777777777777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 751 MMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
|+..+...|++.+|...|+.|++..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7777777777777777777777654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.18 Score=57.60 Aligned_cols=148 Identities=15% Similarity=0.176 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 501 KTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQM 580 (1004)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 580 (1004)
.+....++-+.+.|++++|...|-+.... ..| ..+|.-|....+..+-..+++.+.+.|+. +...-..|+.+
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLnc 440 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNC 440 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHH
Confidence 34455567777888888888887665432 222 23566777888888888999999999985 77777889999
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 581 FAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEA 660 (1004)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 660 (1004)
|.+.++.+.-.++.+... .|.- ..-....+..+.+.+-.++|..+-..... +......+ +...+++++|
T Consensus 441 YiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eA 509 (933)
T KOG2114|consen 441 YIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEA 509 (933)
T ss_pred HHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHH
Confidence 999999998877766544 2211 11134456667777777777766554432 23333333 4557889999
Q ss_pred HHHHHHH
Q 048751 661 LQYFRMM 667 (1004)
Q Consensus 661 ~~~~~~m 667 (1004)
++++..+
T Consensus 510 l~yi~sl 516 (933)
T KOG2114|consen 510 LRYISSL 516 (933)
T ss_pred HHHHhcC
Confidence 9988776
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0067 Score=57.98 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 048751 341 RLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGN 376 (1004)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 376 (1004)
+-+-|++++++|...|+-||..|+..|++.+++.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456788899999999999999999999998866553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.023 Score=50.05 Aligned_cols=90 Identities=24% Similarity=0.258 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hh-hHHHHH
Q 048751 749 AAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPD---NG-TFKVLF 822 (1004)
Q Consensus 749 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~-~~~~l~ 822 (1004)
..+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++.... .|+ .. ....+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHH
Confidence 3455566666666666666666666654333 334555666666666666666666666543 122 11 111222
Q ss_pred HHHHcCCCcHHHHHHHHh
Q 048751 823 TILKKGGFPIEAVKQLQS 840 (1004)
Q Consensus 823 ~~~~~~g~~~~A~~~l~~ 840 (1004)
.++...|+.++|+..+-.
T Consensus 83 l~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 344455555555554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.03 Score=55.60 Aligned_cols=180 Identities=16% Similarity=0.089 Sum_probs=89.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT 792 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 792 (1004)
..+..+...|++++|.+.|+.+....|. -..+...++.++.+.|++++|+..+++.++.-+.-...-+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 4455566778888888888888777643 3445667777888888888888888887764321112222222222211
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhh---
Q 048751 793 NGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALG--- 869 (1004)
Q Consensus 793 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~--- 869 (1004)
........ .... ..+...+|...++..++..|...-. .+|..
T Consensus 90 ~~~~~~~~---------~~~~-------------D~~~~~~A~~~~~~li~~yP~S~y~-------------~~A~~~l~ 134 (203)
T PF13525_consen 90 YKQIPGIL---------RSDR-------------DQTSTRKAIEEFEELIKRYPNSEYA-------------EEAKKRLA 134 (203)
T ss_dssp HHHHHHHH----------TT----------------HHHHHHHHHHHHHHHH-TTSTTH-------------HHHHHHHH
T ss_pred HHhCccch---------hccc-------------ChHHHHHHHHHHHHHHHHCcCchHH-------------HHHHHHHH
Confidence 11110000 0001 1112234444555555444443211 01111
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHH
Q 048751 870 TCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD----IVTCINLVGCYGKAGLVEGVKR 939 (1004)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~l~~~~~~~g~~~~A~~ 939 (1004)
.+...+.. .-..++..|.+.|.+..|+.-++.+++. -|+ ...+..|+.++.+.|..+.+..
T Consensus 135 ~l~~~la~-------~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 135 ELRNRLAE-------HELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHH-------HHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHH-------HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 11111111 1223567788888888888888888873 343 3466777778888887774443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.047 Score=55.26 Aligned_cols=100 Identities=9% Similarity=0.043 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 709 PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG---MLDEAIDAAEEMKLSGLLRDVISYNQ 785 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ 785 (1004)
.|...|..|...|...|+++.|...|.+..+..++++..+..++.++..+. ...++..+|++++.... -|..+...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~l 232 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSL 232 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHH
Confidence 388899999999999999999999999999999999999988888776554 36688899999998652 34667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
|...+...|++.+|...|+.|++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 888899999999999999999865
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0038 Score=49.16 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=49.5
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHH
Q 048751 477 INEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVM 542 (1004)
Q Consensus 477 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 542 (1004)
...|++++|.+.|+++....|.+..+...++.+|.+.|++++|..++..+.. ..|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~---~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK---QDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG---GGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCcCHHHHHHH
Confidence 4678888888888888888888888999999999999999999999988876 45554444443
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.093 Score=57.68 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+...+..-+.+...+.-|.++|.+|-.. ..++......++|++|..+.++..+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCcc
Confidence 4444444455556666777777766543 3456667777777777777766554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0089 Score=57.16 Aligned_cols=102 Identities=17% Similarity=0.316 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048751 326 TSTYNTLIDLYGKA-----GRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYN 400 (1004)
Q Consensus 326 ~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 400 (1004)
-.+|..+++.|.+. |.++=....+..|.+.|+.-|..+|+.|+..+-+ |.+- -..+|+.+-
T Consensus 47 K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F------------ 112 (228)
T PF06239_consen 47 KATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF------------ 112 (228)
T ss_pred HHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh------------
Confidence 45677777777643 5566666667777777777777777777777654 3221 001111110
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 048751 401 ILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNM 446 (1004)
Q Consensus 401 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 446 (1004)
..| -.+-+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 113 ---~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ---MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 000 12345667777777777777777777777777765554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0042 Score=48.34 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=48.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDA 745 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 745 (1004)
+...+.+.|++++|...|+.+.+..+. +...+..+..++.+.|++++|...|+++.+..|.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677888888888888888876643 667778888888888888888888888888776653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.77 Score=49.00 Aligned_cols=122 Identities=18% Similarity=0.179 Sum_probs=70.7
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--
Q 048751 140 TVVLKEQKSWERVIRVFEFFKSQKDYVPN----VIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDV-- 213 (1004)
Q Consensus 140 ~~~l~~~~~~~~a~~~f~~~~~~~~~~~~----~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-- 213 (1004)
..+|..+++..+|..+|-.+-......|. ....+.+|+++.. .+.+.+...+.+..+.. | ...|-.|..+
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALV 88 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHH
Confidence 46788889999999988766533222221 2345566777664 46777777777766543 1 2234444443
Q ss_pred HHhcCCHHHHHHHHHHHHhc--CCC------------CChhhHHHHHHHHHHcCChhHHHHHHHHh
Q 048751 214 YGKAGLIKEALLWIKHMKLR--GIF------------PDEVTMNTVVRVLKEVGEFDSADRFYKDW 265 (1004)
Q Consensus 214 ~~~~g~~~~A~~~~~~m~~~--g~~------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 265 (1004)
+-+.|.+++|++.+..-... +.. +|-+.-+.....+.+.|++.++..+++++
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 34677788887776665544 222 12222344455666666666666666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.14 Score=56.36 Aligned_cols=100 Identities=19% Similarity=0.115 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1004)
+..+...+..-+.+...+..|-++|..|-+. ..+++.....++|++|..+.+..-+. .|+ +|.-...
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHH
Confidence 3444444445555566677777777776432 34566667778888888776654331 222 3333444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 720 LYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
-++...++++|.+.| .+.|+..+|..+++++..
T Consensus 813 wLAE~DrFeEAqkAf---------------------hkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAF---------------------HKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHHH---------------------HHhcchHHHHHHHHHhhh
Confidence 555556666665443 345666666666666653
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0075 Score=48.29 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=46.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 719 SLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
..|.+.+++++|.++++.+...+|.++..|...+.++...|++++|...+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467778888888888888888888888888888888888888888888888888755
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.028 Score=57.69 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVD---AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD----VISYNQ 785 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 785 (1004)
.|...+..+.+.|++++|...|+.+.+..|.+ +.++..++.+|...|++++|+..|+.+.+.. |+ ...+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHHHH
Confidence 34444444455566777777777776666554 3566666667777777777777777666532 22 334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
++..+...|++++|..+|+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555566666677777666666543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.081 Score=48.68 Aligned_cols=91 Identities=10% Similarity=-0.043 Sum_probs=73.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQL 796 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 796 (1004)
...-+...|++++|..+|+-+.-.++.+...|..|+.++...+++++|+..|......+. -|+..+-....++...|+.
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 344566789999999999988888888888888888888899999999988887766543 4455566677888889999
Q ss_pred HHHHHHHHHHHH
Q 048751 797 RQCGELLHEMLT 808 (1004)
Q Consensus 797 ~~A~~~~~~~~~ 808 (1004)
+.|...|...+.
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999998888876
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.034 Score=57.09 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD--TVASNTMISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMM 752 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~ 752 (1004)
.|...+..+.+.|++++|...|+.+++..+... ..++..++.+|...|++++|...|+.+.+..|. ...++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777777777777776544321 235556777777788888888888888776654 445566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 048751 753 YLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 753 ~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
.++...|++++|..+|+++++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777888888888888777743
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.49 Score=46.53 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 656 KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFN 735 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 735 (1004)
..+..++.|++-.. .+.+.++..+.-.|.+.-...++.+.++...+.++.....|++.-.+.|+.+.|...|+
T Consensus 164 ~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 164 AEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred chhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 33555556655433 34566777777788888889999999988877888889999999999999999999999
Q ss_pred HHHHcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 736 DIREKG------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 736 ~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+..+.. .........+...|.-++++..|...+.+....+. .|+..-|.-.-+..-.|+..+|++.++.|...
T Consensus 237 ~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 237 DVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 776543 23344455566677888899999999988887653 45555566555666778999999999998754
Q ss_pred CCCCChhhHHHH
Q 048751 810 KLLPDNGTFKVL 821 (1004)
Q Consensus 810 ~~~p~~~~~~~l 821 (1004)
.|...+...+
T Consensus 316 --~P~~~l~es~ 325 (366)
T KOG2796|consen 316 --DPRHYLHESV 325 (366)
T ss_pred --CCccchhhhH
Confidence 4555554443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.4 Score=47.02 Aligned_cols=79 Identities=6% Similarity=-0.012 Sum_probs=61.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 048751 166 VPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTV 245 (1004)
Q Consensus 166 ~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 245 (1004)
+-|...|-.||.-|+..|..++.++.+++|..-- +--..+|..-+++-....++.....+|.+.....+.. ..|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l--dLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL--DLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH--hHHHHH
Confidence 4577799999999999999999999999997532 4445668877887777889999999999988875543 444444
Q ss_pred HH
Q 048751 246 VR 247 (1004)
Q Consensus 246 ~~ 247 (1004)
+.
T Consensus 116 l~ 117 (660)
T COG5107 116 LE 117 (660)
T ss_pred HH
Confidence 43
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.3 Score=46.92 Aligned_cols=106 Identities=20% Similarity=0.238 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 610 SSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKI 689 (1004)
Q Consensus 610 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 689 (1004)
+..|.-+...|+...|.++-.+.. .|+..-|-..+.+|+..++|++-.++... +-+++.|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 334455556677666666655553 46666677777777777777665554321 12345677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 690 GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFN 735 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 735 (1004)
|+..+|..+...+ + + ..-+..|.+.|++.+|.+.--
T Consensus 251 ~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHH
Confidence 7777777666551 1 1 344566677777777766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.44 Score=50.93 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 887 NVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 887 ~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
-.++.++.-.|+.++|.+.+++|.+
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 3344445555555555555555554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.25 Score=50.78 Aligned_cols=221 Identities=10% Similarity=-0.015 Sum_probs=114.6
Q ss_pred cCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCC-CCCCHHHHHHHHHHHHHcCC
Q 048751 724 LGMVTEAESMFNDIREKG---QVDAVSFAAMMYLYKTMGMLDEAIDAAEEM----KLSG-LLRDVISYNQVMACFATNGQ 795 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~p~~~~~~~l~~~~~~~g~ 795 (1004)
..+.++|+..+.+..++- .....++..+..+.++.|++++++..---. .+.. -..-...|..+.+++.+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444443332 112334555556666666666555332111 1100 00112344555555555555
Q ss_pred HHHHHHHHHHHHHC-CCCCChh---hHHHHHHHHHcCCCcHHHHHHHHhHhhccCCc-------hhhhHHHHHHHHHhhh
Q 048751 796 LRQCGELLHEMLTQ-KLLPDNG---TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPY-------ASEAIITSVYSVVGLN 864 (1004)
Q Consensus 796 ~~~A~~~~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~-------~~~~~~~~l~~~~~~~ 864 (1004)
+.+++.+-..-... |..|... ....+..+..-.+.++++++.++.+++-.... .....++.+|...+++
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 55555554443321 2223111 12223344444555667777777666643221 1123456777888888
Q ss_pred HhhhhHHHHHHhhhccC---C------chhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHh
Q 048751 865 ALALGTCETLIKAEAYL---D------SFIYNVAIYAFKSSGKNDKALNTFMKMLD----QGLEP-DIVTCINLVGCYGK 930 (1004)
Q Consensus 865 ~~A~~~~~~~~~~~~~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p-d~~t~~~l~~~~~~ 930 (1004)
++|+-+..++.+.-... | ..+...+..+|...|+.-+|.+.-++..+ .|-.| -......+.+.|..
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 87777666665542111 1 12345566777788888888777776654 23333 23455677788888
Q ss_pred cCChhHHHHHHHHH
Q 048751 931 AGLVEGVKRIHSQL 944 (1004)
Q Consensus 931 ~g~~~~A~~~~~~~ 944 (1004)
.|+.|.|..-++.+
T Consensus 259 ~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 259 RGDLERAFRRYEQA 272 (518)
T ss_pred cccHhHHHHHHHHH
Confidence 88888877766543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.5 Score=46.88 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=26.1
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 614 AAYARLGQLSNAVDLFHEMRRAGVE--PNEVVYGSLINGFAATGKVEEALQYFRMMREC 670 (1004)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 670 (1004)
..+...|++.+|...|+.+...... --....-.++.++.+.|+++.|...++..++.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344555555555555555543100 01233334455555555555555555555543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.012 Score=46.42 Aligned_cols=65 Identities=23% Similarity=0.205 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcC
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG-MVTEAESMFNDIREKG 741 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 741 (1004)
..+|..+...+...|++++|+..|++.++.... +...|..+..++...| ++++|++.+++..+..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 445555666666666666666666666654432 4455566666666666 4666666666665543
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.6 Score=50.34 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHH----HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMI----YTCGSHGNLSEAEALFCMMEESRISPDTKTYNILL 403 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 403 (1004)
....-+..+++...++-|+.+-+ ..+. |..+...+. .-+.+.|++++|...|-+-... ++|. .+|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 45566777888888888877643 3333 333333333 3345788888888777665532 2332 345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 404 SLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIE 456 (1004)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (1004)
.-|.+...+.+-..+++.+.+.|+. +..--..|+.+|.+.++.++-.+..+.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 5666666777777777777777764 444456677788888887766655543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.11 Score=47.83 Aligned_cols=89 Identities=9% Similarity=-0.076 Sum_probs=77.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
.-+...|++++|..+|.-+...++. +..-|..|..++-..+++++|+..|.......+.|+..+...+.+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 3456789999999999988876664 566677888888899999999999999988888888889999999999999999
Q ss_pred HHHHHHHHHH
Q 048751 764 AIDAAEEMKL 773 (1004)
Q Consensus 764 A~~~~~~~~~ 773 (1004)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999999887
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.61 Score=49.88 Aligned_cols=176 Identities=15% Similarity=0.038 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCChhhHH
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSG---LLRDVISYNQVMACFAT---NGQLRQCGELLHEMLTQKLLPDNGTFK 819 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~ 819 (1004)
.+...++-+|....+|+..+++.+.+...- +......--..+-++.+ .|+.++|+.++..++...-.+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455555666666666666666665420 00112222233445555 677777777777755555556666666
Q ss_pred HHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCCh
Q 048751 820 VLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKN 899 (1004)
Q Consensus 820 ~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 899 (1004)
.+...|... ..+. ........++|++.|.+..+.. +|.++=-+++..+...|..
T Consensus 222 L~GRIyKD~-------------~~~s-----------~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 222 LLGRIYKDL-------------FLES-----------NFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHD 275 (374)
T ss_pred HHHHHHHHH-------------HHHc-----------CccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCc
Confidence 655544310 0000 0001111345566666666553 2333323333333334422
Q ss_pred HHH----HHHH----HHHHHCCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcC
Q 048751 900 DKA----LNTF----MKMLDQGL---EPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYG 947 (1004)
Q Consensus 900 ~~A----~~~~----~~m~~~g~---~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~ 947 (1004)
.+. .++- ..+.++|. ..|-+-+.+++.++.-.|+.++|.+..+++.+.
T Consensus 276 ~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 276 FETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 111 1111 11112332 247788889999999999999999999998643
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.32 Score=46.36 Aligned_cols=181 Identities=16% Similarity=0.115 Sum_probs=103.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCG 800 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 800 (1004)
|-..|-+.-|+--|.+.....|.-+.++|.++--+...|+++.|.+.|+...+.++.-+-...|.-| ++.-.|++.-|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhH
Confidence 4455667777777777777788888888888888888899999999888888754322222233322 334567888887
Q ss_pred HHHHHHHHCCCCCChhhHHHHHH-HHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHH--HHhhhHhhhhHHHHHHhh
Q 048751 801 ELLHEMLTQKLLPDNGTFKVLFT-ILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYS--VVGLNALALGTCETLIKA 877 (1004)
Q Consensus 801 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~--~~~~~~~A~~~~~~~~~~ 877 (1004)
+-+.+.-..+ |+. .|+.+-- .-...-++.+|...+.+-.+.... ..|++.+. ..|...+ ...++++..
T Consensus 154 ~d~~~fYQ~D--~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~----e~WG~~iV~~yLgkiS~-e~l~~~~~a- 224 (297)
T COG4785 154 DDLLAFYQDD--PND-PFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDK----EQWGWNIVEFYLGKISE-ETLMERLKA- 224 (297)
T ss_pred HHHHHHHhcC--CCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHHhccH----hhhhHHHHHHHHhhccH-HHHHHHHHh-
Confidence 7666664332 211 1222221 122334566776555443332221 22332211 1222211 011111111
Q ss_pred hccC-------CchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 878 EAYL-------DSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 878 ~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
+... -..+|..|+.-|...|+.++|..+|+-.+.
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1010 134688888899999999999999988775
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.17 Score=51.96 Aligned_cols=223 Identities=10% Similarity=-0.004 Sum_probs=141.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCC---ChhhHHHHHHHHHc
Q 048751 755 YKTMGMLDEAIDAAEEMKLSG--LLRDVISYNQVMACFATNGQLRQCGELLHEMLTQK--LLP---DNGTFKVLFTILKK 827 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p---~~~~~~~l~~~~~~ 827 (1004)
+....++++|+..+.+.+.+- ......+|..+..+.+..|.+++++.+--.-++.- ... --..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788887777666531 11124567788888999999988765443322211 111 12234555555555
Q ss_pred CCCcHHHHHHHHhHhhccC----Cchh--hhHHHHHHHHHhhhHhhhhHHHHHHhhhc-----cCCchhHHHHHHHHHhc
Q 048751 828 GGFPIEAVKQLQSSYQEVK----PYAS--EAIITSVYSVVGLNALALGTCETLIKAEA-----YLDSFIYNVAIYAFKSS 896 (1004)
Q Consensus 828 ~g~~~~A~~~l~~~~~~~~----~~~~--~~~~~~l~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 896 (1004)
..+..+++.+-...+.... .... ...++..+...+.++++++.|+++..... -....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 5555666655554444321 1112 23344456677788899999998877532 22345799999999999
Q ss_pred CChHHHHHHHHHHHH----CCCCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHc----CCCCCc-HHHHHHHHHH
Q 048751 897 GKNDKALNTFMKMLD----QGLEP-D----IVTCINLVGCYGKAGLVEGVKRIHSQLKY----GKMEPN-ENLFKAVIDA 962 (1004)
Q Consensus 897 g~~~~A~~~~~~m~~----~g~~p-d----~~t~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~ 962 (1004)
.++++|+-+..++.+ .|+.- + ....-.|.-++...|.+-+|.+..++..+ .|-.+. +.....++|+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999988777765 23321 1 12344566678889999888888876543 343443 5677899999
Q ss_pred HHhcCChhHHHHHHH
Q 048751 963 YRNANREDLADLACQ 977 (1004)
Q Consensus 963 ~~~~g~~~~A~~~~~ 977 (1004)
|...|+.|.|..-++
T Consensus 256 yR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYE 270 (518)
T ss_pred HHhcccHhHHHHHHH
Confidence 999999888755444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.1 Score=56.41 Aligned_cols=111 Identities=13% Similarity=-0.015 Sum_probs=87.8
Q ss_pred hhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 048751 862 GLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKRI 940 (1004)
Q Consensus 862 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~~ 940 (1004)
....+|.+..+++++.+ +.|+.+...++.++...|+.+.|...|++... +.|| ..+|....+.+.-+|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34456888888999887 55899999999999999999999999999987 7886 55788888888899999999999
Q ss_pred HHHHHcCCCCCc---HHHHHHHHHHHHhcCChhHHHHHHHH
Q 048751 941 HSQLKYGKMEPN---ENLFKAVIDAYRNANREDLADLACQE 978 (1004)
Q Consensus 941 ~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 978 (1004)
+++.. .++|. +.+.+..++.|...+ .++|.+++-+
T Consensus 395 i~~al--rLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSL--QLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHh--ccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 98853 34554 566777788887755 6677666543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.21 E-value=2.8 Score=46.82 Aligned_cols=336 Identities=10% Similarity=0.016 Sum_probs=171.7
Q ss_pred CHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHH-cCCChhHHHHHH
Q 048751 481 LLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYG-KSKLYDKAFSLF 559 (1004)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~ 559 (1004)
..+.+...+..++...|..-.-|...+..-.+.|..+.+.++|++... +.+.++..|.....-++ ..|+.+.....|
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 345555566666666666666777777777777777777777777654 35566666666555443 346666666777
Q ss_pred HHHHHC-CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---Hc------CCHhHHHHH
Q 048751 560 KVMKNL-GTW-PDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYA---RL------GQLSNAVDL 628 (1004)
Q Consensus 560 ~~m~~~-g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~---~~------g~~~~A~~~ 628 (1004)
+..... |.. -....|...|..-..++++.....+++..++. |. ..|+....-|. +. ...+++.++
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l 213 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQNEEKILLSIDELIQL 213 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence 766543 221 12334555666666777777777777777763 21 12222222221 11 112222222
Q ss_pred HHHHHHc----CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 629 FHEMRRA----GVEPNEVVYGSLINGFAA-TGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMK 703 (1004)
Q Consensus 629 ~~~m~~~----g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 703 (1004)
-...... -..+....+..-+.--.. .+..+++.....+.. ...-..+-......+....++.-+
T Consensus 214 ~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 214 RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHHHhhhhhc
Confidence 1111110 000001111111110000 001111111111110 011111222222333333344333
Q ss_pred hCCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 704 EMEG-------GPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 704 ~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 776 (1004)
+... .++..+|+..++--.+.|+.+...-+|++..-....-...|...+.-....|+.+-|-.++....+--.
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 3211 235567888888888999999999999988776555666777777777777888888777776665444
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHcCCCcHHHH
Q 048751 777 LRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGT-FKVLFTILKKGGFPIEAV 835 (1004)
Q Consensus 777 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~ 835 (1004)
+..+.+-..-....-..|++..|..+++...+. . |+... -..-+....+.|..+.+.
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhh
Confidence 222333222223345567888888888888655 3 44332 222233344555555544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.12 Score=48.23 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 048751 714 SNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL-----SGLLRDVI 781 (1004)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~ 781 (1004)
...++..+...|++++|..+.+.+....|.+...|..++.+|...|+..+|++.|+++.. .|+.|+..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 344556666677777777777777777777777777777777777777777777766542 35555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.17 Score=54.74 Aligned_cols=66 Identities=11% Similarity=-0.054 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 709 PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAV---SFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
.+...++.+..+|.+.|++++|+..|++..+.+|.+.. +|..++.+|...|++++|+..+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35667888899999999999999999999999888774 5999999999999999999999999884
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.043 Score=43.83 Aligned_cols=64 Identities=20% Similarity=0.098 Sum_probs=46.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSF 748 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 748 (1004)
..|.+.+++++|.++++.+...++. +...+.....++.+.|++++|.+.|+...+..|.+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4566777778888887777776544 666667777777888888888888888877776655543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.89 E-value=3 Score=44.31 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048751 643 VYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYA 722 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1004)
+.+..+.-+...|+...|.++-.+. ++ |+...|...+.+++..++|++-.++... .-++.-|.-++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444566667788888888776655 34 8888999999999999999988776432 124467888899999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
+.|...+|..+..++. +..-+..|.+.|++.+|.+..-+.
T Consensus 249 ~~~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999998888732 256778889999999998765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.5 Score=42.77 Aligned_cols=130 Identities=22% Similarity=0.125 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH-HH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEM-EGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMY-LY 755 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~-~~ 755 (1004)
.+......+...+.+..+...+...... ........+..+...+...+.+..+.+.+.......+.+......... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3344444444444444444444443321 111223333344444444444555555555544443332222222222 45
Q ss_pred HhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 756 KTMGMLDEAIDAAEEMKLSGL--LRDVISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
...|+++.|...+++...... ......+......+...++.+++...+.+..
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 555555555555555533111 0112222223333444455555555555554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.29 Score=45.54 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCChhhHH
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEML-----TQKLLPDNGTFK 819 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~ 819 (1004)
.+...++..+...|++++|+.+.+++....+ -|...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3556677888899999999999999998663 467899999999999999999999999983 248888876644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.029 Score=45.57 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C-C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKG---Q-V---DAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
+++.+...|...|++++|+..|++..+.. + . -..++..++.+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555666666666666666666554321 1 0 12334445555555555555555554443
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.1 Score=48.56 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG--L-LRDVISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
...+.|.++++.+.+..|........-+..+...|+.++|++.|++..... . +.....+--+..++.-..+|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 446666677777766666666666666666666777777777766544311 1 0112344455566666777777777
Q ss_pred HHHHHHHC
Q 048751 802 LLHEMLTQ 809 (1004)
Q Consensus 802 ~~~~~~~~ 809 (1004)
.|.++.+.
T Consensus 327 ~f~~L~~~ 334 (468)
T PF10300_consen 327 YFLRLLKE 334 (468)
T ss_pred HHHHHHhc
Confidence 77777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1 Score=43.92 Aligned_cols=202 Identities=15% Similarity=0.112 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFA 791 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 791 (1004)
.|..-..+|....++++|...+.+..+-...+...| -...-++.|.-+.+++.+ + +. ...|+.....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf-------hAAKayEqaamLake~~k--l-sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF-------HAAKAYEQAAMLAKELSK--L-SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHH--h-HHHHHHHHHHHHHHH
Confidence 344445667777777777776666655332222222 122334555555555554 1 22 334555666677
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh-------hhHHHHHHHHHhhh
Q 048751 792 TNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS-------EAIITSVYSVVGLN 864 (1004)
Q Consensus 792 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 864 (1004)
..|.++.|-..+++.-+ ..+.-++++|+.++++.+........ ..-.+.++.+..++
T Consensus 103 E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 77777766666665521 12233455555555555443222111 11123445566666
Q ss_pred HhhhhHHHHHHhhh----ccCCc-hhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHhcCChhH
Q 048751 865 ALALGTCETLIKAE----AYLDS-FIYNVAIYAFKSSGKNDKALNTFMKMLDQG--LEP-DIVTCINLVGCYGKAGLVEG 936 (1004)
Q Consensus 865 ~~A~~~~~~~~~~~----~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p-d~~t~~~l~~~~~~~g~~~~ 936 (1004)
.+|-..+.+..... .-++. ..|...|-.|....++..|...++.-...+ ..| |..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 66555554432221 11111 234555555666667777777777654421 122 456777777655 5566666
Q ss_pred HHHHH
Q 048751 937 VKRIH 941 (1004)
Q Consensus 937 A~~~~ 941 (1004)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 66654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=2.8 Score=42.32 Aligned_cols=200 Identities=21% Similarity=0.182 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRA-GVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
...+......+...+++..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 345555566666667777666666665531 123344555556666666666677777777666543322 112222222
Q ss_pred -HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCC
Q 048751 685 -AYSKIGCLEGAKQVYEKMKEMEG--GPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV-DAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 685 -~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 760 (1004)
.+...|+++.|...+.+...... ......+......+...++.+.|...+.......+. ....+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56666777777777776644221 112223333334455666777777777777766665 46666666677777777
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 761 LDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 761 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
++.|...+....... |+ ...+..+...+...+..+++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777776666633 33 23333333333355556666665555543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.022 Score=46.29 Aligned_cols=64 Identities=23% Similarity=0.339 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CcC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKS----GV-AVD-TITFNTMIYTCGSHGNLSEAEALFCMMEE 389 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~t~~~ll~~~~~~g~~~~A~~l~~~m~~ 389 (1004)
..+|+.+...|...|++++|++.|++..+. |- .|+ ..+++.+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567888888888888888888888887643 21 122 44666777777777888888777776653
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.16 Score=54.84 Aligned_cols=70 Identities=13% Similarity=0.030 Sum_probs=59.9
Q ss_pred CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 048751 319 SVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDT----ITFNTMIYTCGSHGNLSEAEALFCMMEES 390 (1004)
Q Consensus 319 ~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~l~~~m~~~ 390 (1004)
....|++...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|++++|++.+++..+.
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999998886 4553 35888889999999999999999998875
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.25 Score=52.10 Aligned_cols=139 Identities=14% Similarity=0.039 Sum_probs=94.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 647 LINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM 726 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (1004)
-.+.|.+.|++..|..-|++.+.. + . +...-+.++...... .-...++.+.-+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~-l-~-----------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF-L-E-----------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH-h-h-----------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhh
Confidence 456778888888888887776542 0 0 001111122211111 123345667788999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHH-HHHHHHH
Q 048751 727 VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVI-SYNQVMACFATNGQLR-QCGELLH 804 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~-~A~~~~~ 804 (1004)
+.+|+...++.++..+.|.-+...-+.+|...|+++.|+..|+++++. .|+.. +-+.|+.+--+..+.. ...++|.
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999984 46644 3444444444444333 3467777
Q ss_pred HHHH
Q 048751 805 EMLT 808 (1004)
Q Consensus 805 ~~~~ 808 (1004)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 7754
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=2 Score=42.86 Aligned_cols=183 Identities=15% Similarity=0.068 Sum_probs=103.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLR 797 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 797 (1004)
-.+.|++++|.+.|+.+....|. ...+...++.++.+.+++++|+..+++.....+.-...-|...+.+++.--.++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 44678899999999998887754 455677778888899999999999988887543333344555555444110000
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhh
Q 048751 798 QCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKA 877 (1004)
Q Consensus 798 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~ 877 (1004)
...-|.. -..+|..-+++.++..|...=. ..|......+...
T Consensus 124 ------------~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya-------------~dA~~~i~~~~d~ 165 (254)
T COG4105 124 ------------DVTRDQS-------------AARAAFAAFKELVQRYPNSRYA-------------PDAKARIVKLNDA 165 (254)
T ss_pred ------------ccccCHH-------------HHHHHHHHHHHHHHHCCCCcch-------------hhHHHHHHHHHHH
Confidence 0000000 0112233333333333322100 0000000000000
Q ss_pred hccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 878 EAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ-GLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 878 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
=..-=..+++-|.+.|.+-.|..-+++|++. .-.+ -...+..|..+|.+.|..++|.+.-+-+.
T Consensus 166 ----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 166 ----LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred ----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 0001123567888999999999999999885 1111 23466777788999999999988877664
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.21 Score=50.02 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-RD-VISYNQVM 787 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~l~ 787 (1004)
.|+.-++ +.+.|++.+|...|....+..|. .+.++..|+.++...|++++|..+|..+.+.-.. |- +.++-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4554444 34556677777777777777754 3456667777777777777777777777664211 11 45666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 048751 788 ACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.043 Score=38.46 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMY 753 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 753 (1004)
++..+...|.+.|++++|+++|+++.+..|.|+..|..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45667778888888888888888888888888777776653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.53 Score=42.44 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=51.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT 792 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 792 (1004)
-.....+.|++++|.+.|+.+....|. ...+...++.+|.+.|++++|+..+++.++..+.-..+-|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 344455678888888888888887753 4556777888888888888888888888875432223445444555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.4 Score=47.90 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
.+|.++.++..+.+.. |..+...+..++.-.++++.|..+|++....+|....+|...+....-.|+.++|.+.+++..
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444445544432 444444455545555555555555555555555555555555555555555555555555554
Q ss_pred H
Q 048751 773 L 773 (1004)
Q Consensus 773 ~ 773 (1004)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 4
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.44 Score=50.38 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=100.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048751 612 VIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGC 691 (1004)
Q Consensus 612 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 691 (1004)
-.+.|.+.|++..|...|++.... -. |...-+.++...... .-..++..+..++.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhh
Confidence 357899999999999999987652 00 111111122211111 122356777888899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 048751 692 LEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA-IDAAEE 770 (1004)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~ 770 (1004)
+..|++..+..+..+.. |......-..+|...|+++.|+..|+++.+..|.|-.+-..++.+-.+...+.+. .++|..
T Consensus 273 ~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887654 6766667788999999999999999999999999988888888777766665544 567777
Q ss_pred HHH
Q 048751 771 MKL 773 (1004)
Q Consensus 771 ~~~ 773 (1004)
|..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.96 E-value=2.8 Score=41.11 Aligned_cols=202 Identities=15% Similarity=0.077 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
..|.....+|....++++|...+.+..+ +.+.+...|. ...-++.|.-+.+++.+. +.-...|+.-..+|.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl-sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL-SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHH
Confidence 3466666777888888888887777664 2222322221 112234444444443332 112234455556777
Q ss_pred hcCCHHHHHHHHHHHHH--CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcH
Q 048751 757 TMGMLDEAIDAAEEMKL--SGLLRD--VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPI 832 (1004)
Q Consensus 757 ~~g~~~~A~~~~~~~~~--~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 832 (1004)
..|..+.|-..+++.-+ .+..|+ ...|..-+......++...|.+++.+ +...+.+..+..
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk---------------~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK---------------CSRVLVRLEKFT 167 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH---------------hhhHhhhhHHhh
Confidence 88877777666665432 123344 22344444444444444444444433 334455556666
Q ss_pred HHHHHHHhHhhcc---CCc--hhhhHHHH--HHHHHhhhHhhhhHHHHHHhh---hccCCchhHHHHHHHHHhcCChHHH
Q 048751 833 EAVKQLQSSYQEV---KPY--ASEAIITS--VYSVVGLNALALGTCETLIKA---EAYLDSFIYNVAIYAFKSSGKNDKA 902 (1004)
Q Consensus 833 ~A~~~l~~~~~~~---~~~--~~~~~~~~--l~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 902 (1004)
+|...+.+-..-. ... .--.+++. ++....++..|...++.--+. ..+.+..+...|+.+|-. |+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHH
Confidence 6655544332211 111 11122232 233445666677776653322 223355566666666643 555544
Q ss_pred H
Q 048751 903 L 903 (1004)
Q Consensus 903 ~ 903 (1004)
-
T Consensus 247 ~ 247 (308)
T KOG1585|consen 247 K 247 (308)
T ss_pred H
Confidence 3
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.52 Score=48.02 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=98.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHH
Q 048751 653 ATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDT----VASNTMISLYAELGMVT 728 (1004)
Q Consensus 653 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 728 (1004)
..|+..+|...++++.+. .+.|...+..--.+|...|+.+.-...++++... ..++. ++-..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 356667777777777664 4456666666667777777777777777776643 12232 22233444556778888
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 729 EAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS---GLLRDVISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 729 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
+|++.-++..+.++.|.-+-.+....+.-.|++.++.++..+-... +.-.-...|-...-.+...+.++.|+++|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 8888888888887777777777888888888888887776654321 1101123344445556667888888888876
Q ss_pred HH
Q 048751 806 ML 807 (1004)
Q Consensus 806 ~~ 807 (1004)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 53
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.94 E-value=9 Score=44.66 Aligned_cols=146 Identities=22% Similarity=0.228 Sum_probs=73.1
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHH
Q 048751 621 QLSNAVDLFHEMRRAGVEPNEVVYGSLIN----G-FAATGKVEEALQYFRMMRE-------CGLWANQIVLTSLIKAYSK 688 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~ 688 (1004)
+...|.++++...+.| +...-..+.. + +....+.+.|+.+|+.+.+ .|. .....-+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhc
Confidence 3567888888777765 3322222222 2 3455678888888887766 332 2233444555544
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--hc
Q 048751 689 IG-----CLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL---GMVTEAESMFNDIREKGQVDAVSFAAMMYLYK--TM 758 (1004)
Q Consensus 689 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~ 758 (1004)
.. +.+.|..++....+.|.. +... .+...+..- .+...|.++|......|......+..+..... ..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcC
Confidence 22 445566666666555432 2222 222222221 23556666666666655443333333322222 22
Q ss_pred CCHHHHHHHHHHHHHCC
Q 048751 759 GMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~~ 775 (1004)
-+.+.|..++.+.-+.|
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 34555666666655555
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.94 E-value=5.7 Score=41.62 Aligned_cols=101 Identities=11% Similarity=0.025 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGM---VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
+...++.+|...+. .++|..+++.+....+..+..+..-+..+.+.++.+++.+.+.+|...-..+ ...+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~-e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS-ESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc-cchHHHHHHH
Confidence 45566777776665 4456666666666666666677666666767778888888888887652212 2233333332
Q ss_pred H---HHcCCHHHHHHHHHHHHHCCCCCCh
Q 048751 790 F---ATNGQLRQCGELLHEMLTQKLLPDN 815 (1004)
Q Consensus 790 ~---~~~g~~~~A~~~~~~~~~~~~~p~~ 815 (1004)
+ ... ....|...+..++...+.|..
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 2 332 234555555555444444443
|
It is also involved in sporulation []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.88 E-value=9.5 Score=43.88 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=56.9
Q ss_pred cCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcC---CHHHHHHHHHHhhhcC
Q 048751 425 VGLFPDSVTQRA-----ILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEG---LLHQAKIIFKKCQLDG 496 (1004)
Q Consensus 425 ~g~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 496 (1004)
.|+..+..-|.. +|.-+...+.+..|+++-+.+...-..- ...+.....-+.+.. +.+.+..+-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 455555555543 5666777788888888776664332222 455666666665542 222333333333222
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048751 497 GLSSKTLAAIIDVYAEKGLWAEAETVFYG 525 (1004)
Q Consensus 497 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 525 (1004)
-.+...+..++.....+|+.+-|..+.+.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 23344566777777778888888887754
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.76 E-value=3 Score=42.48 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=24.2
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 617 ARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMM 667 (1004)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 667 (1004)
...|+..+|..+|+...... +-+...--.++.+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455555555555554432 222333444555555555555555555544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=5.7 Score=39.76 Aligned_cols=202 Identities=12% Similarity=0.094 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048751 746 VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR--DVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFT 823 (1004)
Q Consensus 746 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 823 (1004)
..+..-+..-.+.|++++|.+.|+.+....+.- ...+...++.++.+.+++++|+..+++.+..-......-|...+.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 344444555678899999999999998754211 145666777888899999999999998876522212223333333
Q ss_pred HHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHH
Q 048751 824 ILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKAL 903 (1004)
Q Consensus 824 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 903 (1004)
++.. +... ..... ...-..+|...+++++..- |.+..+ .+|.
T Consensus 115 gLs~----------~~~i-~~~~r------------Dq~~~~~A~~~f~~~i~ry-PnS~Ya--------------~dA~ 156 (254)
T COG4105 115 GLSY----------FFQI-DDVTR------------DQSAARAAFAAFKELVQRY-PNSRYA--------------PDAK 156 (254)
T ss_pred HHHH----------hccC-Ccccc------------CHHHHHHHHHHHHHHHHHC-CCCcch--------------hhHH
Confidence 3321 0000 00000 0111124666677777664 333332 2233
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc-H---HHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 904 NTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN-E---NLFKAVIDAYRNANREDLADLACQEM 979 (1004)
Q Consensus 904 ~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~m 979 (1004)
.....+... + ...=..+.+-|.+.|.+..|..-++.+... -|+ . ...-.+..+|...|-.++|.+..+-+
T Consensus 157 ~~i~~~~d~-L---A~~Em~IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 157 ARIVKLNDA-L---AGHEMAIARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHH-H---HHHHHHHHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 322222210 0 011134566788999999888888888643 233 2 35567788999999999999999999
Q ss_pred HhhcCCCCCCch
Q 048751 980 RTAFESPEHDDS 991 (1004)
Q Consensus 980 ~~~~~~~~~~~~ 991 (1004)
..+++..++-.+
T Consensus 231 ~~N~p~s~~~~~ 242 (254)
T COG4105 231 GANYPDSQWYKD 242 (254)
T ss_pred HhcCCCCcchhh
Confidence 988776655443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.55 E-value=1.7 Score=49.37 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=79.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHhcCCHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPDTVASNT-MISLYAELGMVTEAESMFNDIREKG----QVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
....+.|.++++.+.+.- |+...|.. -...+...|++++|++.|++..... ......+-.++..+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 456788888888888753 45544433 3466777899999999999765422 2344567778888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCH-------HHHHHHHHHH
Q 048751 764 AIDAAEEMKLSGLLRDVISYNQVM-ACFATNGQL-------RQCGELLHEM 806 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~ 806 (1004)
|...|.++.+..- -....|..+. .++...|+. ++|.++|.+.
T Consensus 324 A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 324 AAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 9999999998542 2333443333 344567777 7777887776
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.73 Score=40.09 Aligned_cols=89 Identities=13% Similarity=0.022 Sum_probs=60.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCC
Q 048751 719 SLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV---ISYNQVMACFATNGQ 795 (1004)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~ 795 (1004)
-++...|+.+.|++.|.+.....|..+.+||.-..++.-+|+.++|++=+++.++..-.... ..|..-...|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 35677888888888888888888888888888888888888888888888887764211121 122233334455566
Q ss_pred HHHHHHHHHHHH
Q 048751 796 LRQCGELLHEML 807 (1004)
Q Consensus 796 ~~~A~~~~~~~~ 807 (1004)
-+.|..=|...-
T Consensus 131 dd~AR~DFe~AA 142 (175)
T KOG4555|consen 131 DDAARADFEAAA 142 (175)
T ss_pred hHHHHHhHHHHH
Confidence 666555555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.1 Score=50.01 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=101.8
Q ss_pred HHHcCCHhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048751 616 YARLGQLSNAVDLFHEMR-RAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEG 694 (1004)
Q Consensus 616 ~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 694 (1004)
..-.|+++.+.++.+.-. -..+ | ....+.++.-+.+.|..+.|+++..+-.. -.+...+.|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 344678888776665211 1111 2 44577788888888999988887544321 2344567899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 695 AKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 695 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
|.++.+. ..+...|..|.+...+.|+++-|++.|++... +..|.-.|...|+.+.-.++.+.....
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 8887643 24777999999999999999999999988765 567788888999988888888877776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 775 GLLRDVISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 775 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
|- ++....++.-.|+.++..+++.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 62 45555666677888887776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.44 E-value=3.4 Score=42.10 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=24.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
...|++.+|..+|.......+.+......++.+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34444555555555555444444444444555555555555555554444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.42 E-value=2.3 Score=43.59 Aligned_cols=151 Identities=13% Similarity=0.001 Sum_probs=102.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HH--HHHHHHHHHcCC
Q 048751 720 LYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVI--SY--NQVMACFATNGQ 795 (1004)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~--~~l~~~~~~~g~ 795 (1004)
.+.-.|+..+|...++++.+..|.|..++.---.++.-.|+.+.-...++++..+ ..+|.. +| ..+.-++...|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3456788899999999999999999999998889999999999988888888764 235543 33 234445677889
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCc---hhhhHHHHH--HHHHhhhHhhhhH
Q 048751 796 LRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPY---ASEAIITSV--YSVVGLNALALGT 870 (1004)
Q Consensus 796 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~---~~~~~~~~l--~~~~~~~~~A~~~ 870 (1004)
+++|.+.-++..+-+ +.|......+...+...|+..++.++.+...+.-... ....+|... +...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999988888775432 2344455667777788888888888877654432211 112333321 2333455556665
Q ss_pred HH
Q 048751 871 CE 872 (1004)
Q Consensus 871 ~~ 872 (1004)
|+
T Consensus 270 yD 271 (491)
T KOG2610|consen 270 YD 271 (491)
T ss_pred HH
Confidence 55
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.92 Score=50.53 Aligned_cols=154 Identities=17% Similarity=0.128 Sum_probs=75.3
Q ss_pred HHccCCHHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 048751 371 CGSHGNLSEAEALFC--MMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQ 448 (1004)
Q Consensus 371 ~~~~g~~~~A~~l~~--~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 448 (1004)
..-.|+++++.++.+ ++.. .+ +..-.+.+++.+-+.|..+.|+++-..-.. -.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHH
Confidence 335678888777775 2221 11 134466677777777777777665432211 122223344444
Q ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 048751 449 EAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRD 528 (1004)
Q Consensus 449 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 528 (1004)
.| .++.++. .++..|..|++...++|+++-|++.|.+..+
T Consensus 336 ~A-----------------------------------~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 336 IA-----------------------------------LEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HH-----------------------------------HHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HH-----------------------------------HHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 44 3332221 2445666666777777777777776666544
Q ss_pred hcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 048751 529 LVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLA 595 (1004)
Q Consensus 529 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 595 (1004)
|..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..+++.
T Consensus 376 ----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 376 ----------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ----------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 55666666677776666666665555442 3334444444455555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.35 E-value=11 Score=42.34 Aligned_cols=184 Identities=9% Similarity=-0.033 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1004)
+..+|...+.--...|+++.+.-+|+...-- +..=...|-..+.-....|+.+-|..++....+-..+..+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4577888888888899999998888887542 112234555666666666888888888777665444323322222222
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCCHHHHHHHHHH-----HH
Q 048751 720 LYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID---AAEEMKLSGLLRDVISYNQVMAC-----FA 791 (1004)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~p~~~~~~~l~~~-----~~ 791 (1004)
..-..|+++.|..+++.+.+..|.-...-..-+....+.|+.+.+.. ++..... |. -+......+.-- +.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~-~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GK-ENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cc-cCcchhHHHHHHHHHHHHH
Confidence 33455799999999999988876666666667777888888888873 3333322 11 122222222222 23
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 048751 792 TNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKK 827 (1004)
Q Consensus 792 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 827 (1004)
-.++.+.|..++.++.+. ++++...|..++.....
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 357888888888888654 45555556555554443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.49 Score=42.26 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=68.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---------------CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048751 168 NVIHYNIVLRALGRAQKWDELRLRWIEMAK---------------NGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKL 232 (1004)
Q Consensus 168 ~~~~~~~li~~l~~~~~~~~a~~~~~~m~~---------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 232 (1004)
|..++..++.++++.|+.+.+..+++.... ....|+..+..+++.+|+.+|++..|+.+.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 345778899999999999999998876543 12457888999999999999999999999999754
Q ss_pred -cCCCCChhhHHHHHHHHH
Q 048751 233 -RGIFPDEVTMNTVVRVLK 250 (1004)
Q Consensus 233 -~g~~p~~~~~~~l~~~~~ 250 (1004)
.++..+...|..|++-..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 678878889999998543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.33 E-value=3.3 Score=45.29 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048751 654 TGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESM 733 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 733 (1004)
...+.+|.+++++..+.|- ..+. +....+..-..++........+-..+-..+..++.+.|+.++|.+.
T Consensus 213 A~Ti~Eae~l~rqAvkAgE----~~lg-------~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~ 281 (539)
T PF04184_consen 213 ASTIVEAEELLRQAVKAGE----ASLG-------KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKM 281 (539)
T ss_pred ccCHHHHHHHHHHHHHHHH----Hhhc-------hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHH
Confidence 3457888888888776531 1111 0000001111122222323333444445677778888999999999
Q ss_pred HHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 048751 734 FNDIREKGQV--DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVM 787 (1004)
Q Consensus 734 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~ 787 (1004)
+.++.+..|. .......|+.++...+.+.++..++.+-.+... |. ...|+..+
T Consensus 282 ~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaAL 338 (539)
T PF04184_consen 282 FRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAAL 338 (539)
T ss_pred HHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHH
Confidence 9998877654 445778888999999999999888888754333 44 34455544
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.32 E-value=13 Score=45.22 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCC--ChhHHHHHHHHHHH
Q 048751 538 EYNVMIKAYGKSK--LYDKAFSLFKVMKN 564 (1004)
Q Consensus 538 ~~~~li~~~~~~g--~~~~A~~l~~~m~~ 564 (1004)
....+|.+|.+.+ .+++|+....+...
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3445667777766 56666666666554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.11 Score=36.33 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 048751 884 FIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLV 925 (1004)
Q Consensus 884 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~ 925 (1004)
.+|..++.+|...|++++|+++|+++++ ..| |...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhh
Confidence 3577788888888888888888888887 467 455555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.67 Score=46.57 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=28.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQ---VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
|..++...|++++|..+|..+.+..| .-+.++.-++.+..+.|+.++|...|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44455555555555555555544442 2334444455555555555555555555544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.051 Score=35.42 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=25.6
Q ss_pred HHHHHhhhccCCchhHHHHHHHHHhcCChHHHH
Q 048751 871 CETLIKAEAYLDSFIYNVAIYAFKSSGKNDKAL 903 (1004)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 903 (1004)
|+++++.. |.++.+|+.|+..|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666 558889999999999999998886
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.067 Score=34.88 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=26.7
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048751 734 FNDIREKGQVDAVSFAAMMYLYKTMGMLDEAI 765 (1004)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 765 (1004)
|++.++..|.++.+|+.++..|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56777888888888888888888888888875
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.03 E-value=6.5 Score=38.42 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=7.5
Q ss_pred cCCHHHHHHHHHHH
Q 048751 724 LGMVTEAESMFNDI 737 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~ 737 (1004)
.+.+++|.++|.+.
T Consensus 27 ~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 27 SNKYEEAAELYERA 40 (288)
T ss_pred CcchHHHHHHHHHH
Confidence 34556665555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.77 Score=39.95 Aligned_cols=92 Identities=16% Similarity=0.063 Sum_probs=60.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHH--HHHHHHHHHHcCCCh
Q 048751 475 MYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVV--EYNVMIKAYGKSKLY 552 (1004)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~ 552 (1004)
++...|+++.|++.|.+.+...|..+.+|+.-+..+.-+|+.++|.+-+.+..+..|...-.. +|-.-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455667777777777777777777777777777777777777777777777776655442221 233333345566777
Q ss_pred hHHHHHHHHHHHCC
Q 048751 553 DKAFSLFKVMKNLG 566 (1004)
Q Consensus 553 ~~A~~l~~~m~~~g 566 (1004)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777776666655
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.46 Score=47.20 Aligned_cols=104 Identities=13% Similarity=0.228 Sum_probs=60.1
Q ss_pred CchhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 048751 324 RLTSTYNTLIDLYGKA-----GRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKT 398 (1004)
Q Consensus 324 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 398 (1004)
++-.+|-..+..+... +.++--...+..|.+.|++-|..+|+.|++.+-+.. +.|...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv- 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV- 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH-
Confidence 3455677776666543 445656667788888888888888888888765421 111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 048751 399 YNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNM 446 (1004)
Q Consensus 399 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 446 (1004)
+....-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 1223456666666666666666666666666665554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.28 Score=49.98 Aligned_cols=95 Identities=16% Similarity=0.094 Sum_probs=76.5
Q ss_pred HHHHHHHHhCCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 153 IRVFEFFKSQKDYVPN--VIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHM 230 (1004)
Q Consensus 153 ~~~f~~~~~~~~~~~~--~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 230 (1004)
.+|++|+..++.+--. ..++..++..+...|+++.+...++++.... +-+...|..|+.+|.+.|+...|+..|+++
T Consensus 135 ~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 135 DRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4577777654322111 2377889999999999999999999999877 778899999999999999999999999998
Q ss_pred Hh-----cCCCCChhhHHHHHHH
Q 048751 231 KL-----RGIFPDEVTMNTVVRV 248 (1004)
Q Consensus 231 ~~-----~g~~p~~~~~~~l~~~ 248 (1004)
.+ .|+.|...+.......
T Consensus 214 ~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 214 KKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHhhhhcCCCccHHHHHHHHHH
Confidence 65 6888888877666555
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.73 E-value=3.6 Score=39.58 Aligned_cols=182 Identities=14% Similarity=0.055 Sum_probs=114.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHH
Q 048751 755 YKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIE 833 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 833 (1004)
|-..|-+.-|..=|.+.+. +.|+ +.+||-|.--+...|+++.|.+.|+...+.+..-+-... .-.-++.-.|++.-
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l-NRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL-NRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh-ccceeeeecCchHh
Confidence 4444555555555666665 5577 678999998999999999999999998764322222222 22223456799999
Q ss_pred HHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHH-HHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048751 834 AVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCE-TLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ 912 (1004)
Q Consensus 834 A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 912 (1004)
|.+-+...++..|.++-..+|-.+-...-+-.+|..-+. +.... |..-|-..+..|.- |+.. -..+++++..
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a- 224 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKA- 224 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHh-
Confidence 999999999999998888888766655555556654443 33322 33344333333322 1111 1123344432
Q ss_pred CCCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 048751 913 GLEPD-------IVTCINLVGCYGKAGLVEGVKRIHSQLKY 946 (1004)
Q Consensus 913 g~~pd-------~~t~~~l~~~~~~~g~~~~A~~~~~~~~~ 946 (1004)
+-+-+ ..||-.|..-+...|+.++|..+++-...
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11111 24777788888889999999999887654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.49 E-value=4.6 Score=37.08 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=77.3
Q ss_pred cCCChHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 048751 132 ENLSPKEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLV 211 (1004)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 211 (1004)
..++++.+...+...+.+.....+++++.... ..+...+|.+|..+++.. ..++...+.. ..+......++
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~ 76 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVG 76 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHH
Confidence 34556666666666677889999999987653 367778999999999764 3344444442 12345566688
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc-CChhHHHHHHHH
Q 048751 212 DVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEV-GEFDSADRFYKD 264 (1004)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 264 (1004)
+.|.+.+.++++.-++.++.. |...+..+... ++.+.|.+++.+
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 888888989888888877632 22233334444 778888877664
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.47 E-value=2.4 Score=38.32 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=34.3
Q ss_pred HHHHhhhHhhhhHHHHHHhhhc--cCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 858 YSVVGLNALALGTCETLIKAEA--YLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 858 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
....|++++|++.++.+...-+ +-...+.-.|+.+|.+.|++++|+..+++.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566677777777776666532 12234456666777777777777777777766
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.30 E-value=22 Score=42.20 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=30.9
Q ss_pred HHcCCHHHHHHHHHHHHHcC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKG---QV------DAVSFAAMMYLYKTMGMLDEAIDAAE 769 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~---~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 769 (1004)
+-.+++..|....+.+.+.. +. .+..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888888888777653 11 13334444445566788888888886
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.29 E-value=5.7 Score=36.50 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 048751 173 NIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEV 252 (1004)
Q Consensus 173 ~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 252 (1004)
..++..+.+.+....+...++.+.+.+ ..+...++.++..|++.+ ..+.++.++. ..+.+....+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 456666666667777777777766665 345556777777776553 2233333331 12333444455555555
Q ss_pred CChhHHHHHHHH
Q 048751 253 GEFDSADRFYKD 264 (1004)
Q Consensus 253 g~~~~A~~~~~~ 264 (1004)
+.++++.-++.+
T Consensus 83 ~l~~~~~~l~~k 94 (140)
T smart00299 83 KLYEEAVELYKK 94 (140)
T ss_pred CcHHHHHHHHHh
Confidence 555555554443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.07 E-value=10 Score=39.85 Aligned_cols=83 Identities=14% Similarity=0.355 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCC-
Q 048751 657 VEEALQYFRMMRECGLWANQIVLTSLIKAYSK--IG----CLEGAKQVYEKMKEMEG---GPDTVASNTMISLYAELGM- 726 (1004)
Q Consensus 657 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 726 (1004)
+++.+.+++.|.+.|..-+..+|.+....... .. ....|..+|+.|++..+ .++...+..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455667777777776666555443222222 11 23556777777776654 3344444444332 2222
Q ss_pred ---HHHHHHHHHHHHHcC
Q 048751 727 ---VTEAESMFNDIREKG 741 (1004)
Q Consensus 727 ---~~~A~~~~~~~~~~~ 741 (1004)
.+.++.+|+.+.+.+
T Consensus 156 e~l~~~~E~~Y~~L~~~~ 173 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAG 173 (297)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344555555555544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=92.99 E-value=1.4 Score=39.35 Aligned_cols=48 Identities=8% Similarity=0.028 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Q 048751 706 EGGPDTVASNTMISLYAELGMVTEAESMFNDIREKG--QVDAVSFAAMMY 753 (1004)
Q Consensus 706 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 753 (1004)
...|+..+..+++.+|+..|++..|.++.+...+.. +.+...|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345677777777777777777777777777766655 234455555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.88 E-value=5.1 Score=37.05 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=47.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACF-ATNGQ 795 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~ 795 (1004)
.+.++.+++..+++.+.-..|..+..-..-+..+...|+|.+|+.+|+++.+.. |.......|+..| ...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 355678888888888877777777776667777778888888888888876644 4433333444333 33444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.86 E-value=7.5 Score=36.07 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=47.6
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHhcCCHH
Q 048751 688 KIGCLEGAKQVYEKMKEMEGGPDTV-ASNTMISLYAELGMVTEAESMFNDIREKGQVDAV----SFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 762 (1004)
+.++.++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-...+.... .-..-...+...|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444455555555555444432221 1112223344445555555555554443311110 1112223344444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 763 EAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 763 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+.....+-+-..+-..-...-..|.-+-.+.|++.+|...|.++..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444444433322211122233343344444455555444444443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.94 Score=42.35 Aligned_cols=95 Identities=16% Similarity=0.017 Sum_probs=56.8
Q ss_pred HHHHHHHHhHhhccCCchh-hhHHHHHHH----------HHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCC--
Q 048751 832 IEAVKQLQSSYQEVKPYAS-EAIITSVYS----------VVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGK-- 898 (1004)
Q Consensus 832 ~~A~~~l~~~~~~~~~~~~-~~~~~~l~~----------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 898 (1004)
+.|.+..+..+..+|.+.. ...|+..+. ....+++|++-+++++... |....++..++.+|...+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555444 233443321 2245566788888888886 3366788889988876653
Q ss_pred ---------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 899 ---------NDKALNTFMKMLDQGLEPDIVTCINLVGCYG 929 (1004)
Q Consensus 899 ---------~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~ 929 (1004)
+++|.+.|++..+ .+|+...|..-+....
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 5667777777766 6899999988877664
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.50 E-value=20 Score=39.58 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLW-ANQIVLTSLIKAYSKIGCLEGAKQVYEKMK 703 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 703 (1004)
..+..++-+.|+.++|++.+++|.+.... .+..+...|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 44555666667777777777777654322 123355667777777777777777776653
|
The molecular function of this protein is uncertain. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.28 Score=32.50 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
+|+.|+.+|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477889999999999999999998653
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.5 Score=44.96 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL-----SGLLRDVISYNQV 786 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 786 (1004)
.++..++..+...|+++.+...++++....|.+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45667888888889999999999999999999999999999999999999999988888765 4677766665544
Q ss_pred HHH
Q 048751 787 MAC 789 (1004)
Q Consensus 787 ~~~ 789 (1004)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.2 Score=44.27 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048751 624 NAVDLFHEMRRAGVEPNEVVYGSLINGFAATGK 656 (1004)
Q Consensus 624 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 656 (1004)
-+++++++|...|+.||-.+-..|++++.+.+-
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 355666666666666666666666666655543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.78 E-value=30 Score=40.08 Aligned_cols=100 Identities=10% Similarity=0.010 Sum_probs=55.7
Q ss_pred HCCCCcCHHHHHH-----HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcC
Q 048751 354 KSGVAVDTITFNT-----MIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGN--INAALRYYWKIREVG 426 (1004)
Q Consensus 354 ~~g~~p~~~t~~~-----ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g 426 (1004)
..|++.+..-|.. ++.-+...+.+..|.++-..+-..-.+ +...|.....-+.+..+ -+++++..++=...-
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4477666665543 456677778888888887766432112 14556666666665532 223333332222221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 427 LFPDSVTQRAILHILCQRNMVQEAEAVII 455 (1004)
Q Consensus 427 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 455 (1004)
. -...+|..+..--...|+.+-|..+++
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle 531 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLE 531 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHh
Confidence 2 234556666666667777777776664
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.91 E-value=23 Score=37.11 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 048751 573 TYNSLVQMFAGGDLM---GQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA 635 (1004)
Q Consensus 573 t~~~ll~~~~~~~~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 635 (1004)
++..++.++...+.. ++|..+++.+.... +-.+.++..-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344555555555443 34444555554321 112333333445555566667777777776654
|
It is also involved in sporulation []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.79 E-value=39 Score=39.51 Aligned_cols=129 Identities=17% Similarity=0.232 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 048751 538 EYNVMIKAYGKSK-----LYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAG-GDLMGQAVDLLAEMQGAGFKPQCLTFSS 611 (1004)
Q Consensus 538 ~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 611 (1004)
..+.+..+|.+.. +.+.|+.++.+.-..|. |+...+-..+..... ..+...|.++|...-..|..+ .+-.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHH
Confidence 3444555555532 55667888877777664 344433333322222 245678888888887776322 2222
Q ss_pred HHHHHH----HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 612 VIAAYA----RLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGL 672 (1004)
Q Consensus 612 li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 672 (1004)
+..+|. -..+...|..++++..+.| .|-..--...+..+.. +.++.+.-.+..+.+.|.
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 222222 2236777888888877776 3332222222333333 666666666666666554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.46 Score=30.83 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 884 FIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 884 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
.+|..++.+|...|++++|+..|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3688888999999999999999999887 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.32 E-value=42 Score=39.17 Aligned_cols=54 Identities=19% Similarity=0.007 Sum_probs=36.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHhc
Q 048751 211 VDVYGKAGLIKEALLWIKHMKLRGIFP---DEVTMNTVVRVLKEVGEFDSADRFYKDWC 266 (1004)
Q Consensus 211 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 266 (1004)
++++.+.+.+++|+.+.+..... .| -...+..+|+-|.-.|++++|....-+|.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 56777788888887776654433 33 23356677777777888888877766654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.18 E-value=55 Score=40.29 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV--ISYNQVMACF 790 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~ 790 (1004)
.|.+..+-+...+.+++|.-.|+..-+. ..-+.+|...|+|.+|+.+..++... .|. .+-..|+.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 4445555566677777777777655331 23456777888888888887776531 222 2235677777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHH
Q 048751 791 ATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQ 839 (1004)
Q Consensus 791 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~ 839 (1004)
...+++-+|-++..+.... | ...+..|+++..+++|+....
T Consensus 1010 ~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHH
Confidence 8888888888887776432 1 233444555566666655443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.16 E-value=10 Score=34.49 Aligned_cols=53 Identities=19% Similarity=0.053 Sum_probs=37.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
..++.+++..+++.+.-..|.....-..-+..+...|+|++|+.+|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35677777777777777766666666666666777777777777777777654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.15 E-value=9.9 Score=35.21 Aligned_cols=46 Identities=9% Similarity=-0.078 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 048751 481 LLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGK 526 (1004)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 526 (1004)
+.+++..++..+..-.|..+..-..-+..+...|++.+|+.+|+++
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3333333333333333333333333333444444444444444443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.89 E-value=9.2 Score=45.15 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=41.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhc---
Q 048751 334 DLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRI-SPDTKTYNILLSLYADV--- 409 (1004)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~li~~~~~~--- 409 (1004)
..+.-.|.++.|++.+-+ ..+...|.+.+...+.-+.-.+-.+... ..+..... .|...-+..||..|++.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567999999998866 2233556666666555443222111111 22221110 11125577888888764
Q ss_pred CCHHHHHHHHHHHHHc
Q 048751 410 GNINAALRYYWKIREV 425 (1004)
Q Consensus 410 g~~~~A~~~~~~m~~~ 425 (1004)
.+..+|+++|--+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 5788888888777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.77 E-value=14 Score=32.74 Aligned_cols=60 Identities=15% Similarity=0.336 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
.-++.+.+.|+-++-.+++..+.+.+.+++.....++.+|.+.|+..++-+++.++-++|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334444455555555555555444444445555555555555555555555555554444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.64 E-value=18 Score=33.99 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=10.5
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCC
Q 048751 633 RRAGVEPNEVVYGSLINGFAATGK 656 (1004)
Q Consensus 633 ~~~g~~p~~~~~~~li~~~~~~g~ 656 (1004)
.+.+++|+...+..+++.+.+.|+
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCC
Confidence 334444444444444444444444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.30 E-value=19 Score=33.62 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=64.0
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH--HHHHHcCCH
Q 048751 617 ARLGQLSNAVDLFHEMRRAGVEPNEV-VYGSLINGFAATGKVEEALQYFRMMRECGLWANQI-VLTSLI--KAYSKIGCL 692 (1004)
Q Consensus 617 ~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li--~~~~~~g~~ 692 (1004)
.+.+..++|+.-|..+.+.|...-.. ..........+.|+...|...|+++-.....|-.. -...|- -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34556666666666666654332211 11222334455666666666666665433333222 111111 123456666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREK 740 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 740 (1004)
++.....+.+...+.+.....-.+|.-+-.+.|++.+|.+.|..+...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666665544333333334455555666677777777777766653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.29 E-value=2.8 Score=40.21 Aligned_cols=101 Identities=13% Similarity=0.017 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCcHHHHH----
Q 048751 884 FIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD--IVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPNENLFK---- 957 (1004)
Q Consensus 884 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---- 957 (1004)
.++..++.-|.+.|+.++|++.|.++.+....|. ...+..++..+...|++..+...+.++......++.....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4688899999999999999999999998766664 3467788899999999999999988775432232221111
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHhhcC
Q 048751 958 -AVIDAYRNANREDLADLACQEMRTAFE 984 (1004)
Q Consensus 958 -~l~~~~~~~g~~~~A~~~~~~m~~~~~ 984 (1004)
.-+-.+...|++.+|-..+-.....+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 112234567889888887776654443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.66 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
+|..++..|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 577788888888888888888888876 4553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.13 E-value=40 Score=37.23 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=67.3
Q ss_pred CCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHC-CCCCCHHHHH
Q 048751 709 PDTVAS-NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG--MLDEAIDAAEEMKLS-GLLRDVISYN 784 (1004)
Q Consensus 709 ~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~~~p~~~~~~ 784 (1004)
++..++ +.+++.+.+.|-+.+|+..+..+....|++...|..++..-..+- +..-+..+++.+... | .|+..|.
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~ 534 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWM 534 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHH
Confidence 444443 567788888899999999999999988888888888876543221 256667777777653 4 5666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 785 QVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 785 ~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
-.+.-=...|+.+.+-.++.+.++
T Consensus 535 ~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 535 DYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHhhccCCCcccccHHHHHHHH
Confidence 555555567777766666666543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.84 E-value=5.3 Score=37.92 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=34.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 719 SLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 719 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
.++.+.+.++.|+.-..+.++.+|....+...-+.+|.+...+++|+.=|+++.+.
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 44555666666666666666666655555555566666666666666666666653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.77 E-value=0.94 Score=29.92 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 748 FAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 748 ~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
|..|+.+|.+.|++++|+.++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666553
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.73 E-value=59 Score=38.65 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--C--CCcCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHCC---CCCCHHHHH
Q 048751 329 YNTLIDLYGKAGRLQDAANVFAEMLKS--G--VAVDTITFNTM-IYTCGSHGNLSEAEALFCMMEESR---ISPDTKTYN 400 (1004)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g--~~p~~~t~~~l-l~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~ 400 (1004)
...++..+.+.+... |...+++.++. + ..+-...|.-+ +..+...+++..|.+.++.+...- -.|-..++-
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 345677777777666 88888876653 1 12222333333 222333478999999888776431 233444555
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 048751 401 ILLSLYA--DVGNINAALRYYWKIREVGL---------FPDSVTQRAILHILC--QRNMVQEAEAVIIEME 458 (1004)
Q Consensus 401 ~li~~~~--~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 458 (1004)
.++.+.. +.+..+++.+..+++..... .|-..+|..++..++ ..|+++.+...++++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5554443 44666777777776643211 234567777777665 5677777776666553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.59 E-value=15 Score=35.00 Aligned_cols=102 Identities=20% Similarity=0.133 Sum_probs=64.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 649 NGFAATGKVEEALQYFRMMRECGLWAN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
+-+.+.|++++|..-|...++.-+... .+.|..-..++.+.+.++.|+.-..+.++.++. ...+...-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 345567777777777777766532211 223444455677788888888877777776543 223333345577888
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAM 751 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l 751 (1004)
..+++|+.-|.++.+..|....+-...
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 888888888888888876654444333
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.55 E-value=62 Score=38.64 Aligned_cols=58 Identities=17% Similarity=-0.024 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHH--hcCChhHHHHHHHH
Q 048751 886 YNVAIYAFKSSGKNDKALNTFMKMLDQGL----EPDIVTCINLVGCYG--KAGLVEGVKRIHSQ 943 (1004)
Q Consensus 886 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~----~pd~~t~~~l~~~~~--~~g~~~~A~~~~~~ 943 (1004)
+..|+.++...|+.++|....+++..... .++-.+-..++.... ..|+.+++..+..+
T Consensus 621 ~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 621 LSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 34778888999999999999999886422 224334344444332 56888777776654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.38 E-value=4.4 Score=38.11 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048751 797 RQCGELLHEMLTQKLLPDNGTFKVLFTIL 825 (1004)
Q Consensus 797 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 825 (1004)
++|.+.|++... ..|+...|+.-+...
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 344444444432 356666666554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.03 E-value=44 Score=36.39 Aligned_cols=65 Identities=17% Similarity=0.091 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 395 DTKTYNILLSLYADVGNINAALRYYWKIREVGLFP---DSVTQRAILHILCQRNMVQEAEAVIIEMEK 459 (1004)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 459 (1004)
...+|..++..+.+.|.++.|...+.++...+... .....-.-+..+...|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44577788888888888888888888877643211 233344445566677888888888877776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.94 E-value=66 Score=38.24 Aligned_cols=253 Identities=8% Similarity=-0.042 Sum_probs=141.1
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 654 TGKVEEALQYFRMMRECG-LWANQ--IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEA 730 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 730 (1004)
..+.+.|..++....... ..+.. .++..+.......+...+|...++....... +......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHHH
Confidence 456688989998875433 22221 2333443333333335677777666543322 333344445555588999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHC
Q 048751 731 ESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELL-HEMLTQ 809 (1004)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~ 809 (1004)
...+..|.........-..-++.++...|+.++|...|+++... . +|..++. ..+.|..-. ...- ......
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LA-a~~Lg~~~~-~~~~~~~~~~~ 403 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVA-AQRLGEEYP-LKIDKAPKPDS 403 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHH-HHHcCCCCC-CCCCCCCchhh
Confidence 99998886655556666777888888899999999999997431 2 2332222 112232100 0000 000000
Q ss_pred CCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhcc--CCchhHH
Q 048751 810 KLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAY--LDSFIYN 887 (1004)
Q Consensus 810 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 887 (1004)
.+ +.. .....+..+...|...+|...+...... ........+..+....|.++.++....+....+.. --+..|.
T Consensus 404 ~~-~~~-~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~ 480 (644)
T PRK11619 404 AL-TQG-PEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWN 480 (644)
T ss_pred hh-ccC-hHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchH
Confidence 00 000 1122334566778889998888877765 33333455556667777777777666543221100 0123466
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048751 888 VAIYAFKSSGKNDKALNTFMKMLDQGLEPDIV 919 (1004)
Q Consensus 888 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 919 (1004)
..+..+...-..+.++-+----+|.++.|+..
T Consensus 481 ~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 481 DEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 67777777667777765555555677777643
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.32 E-value=26 Score=33.59 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=9.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 048751 751 MMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
|.......|.+|+|++.++...
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccc
Confidence 3444444444444444444433
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.96 E-value=23 Score=33.88 Aligned_cols=56 Identities=11% Similarity=-0.036 Sum_probs=27.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 048751 889 AIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLKY 946 (1004)
Q Consensus 889 l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~~ 946 (1004)
|.+.....|.+|+|+..++...+.++. ......-.+++...|+.++|+.-++....
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 344555555555555555554432221 22233344455555555555555555543
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.93 E-value=50 Score=35.78 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFA 791 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 791 (1004)
.|+.-|...|++.+|......+---.-.....+.+++.+.-+.|+-..-+.++++.-..|. .|-+.+-.+|.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~ 585 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhh
Confidence 4666777778888887777655433334566777777777777777766677666665443 34444444443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.90 E-value=74 Score=37.72 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=15.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC
Q 048751 891 YAFKSSGKNDKALNTFMKMLDQGLEP 916 (1004)
Q Consensus 891 ~~~~~~g~~~~A~~~~~~m~~~g~~p 916 (1004)
.-+.+.|++++|++.++++ ++-|
T Consensus 513 f~~~~~g~~~~AL~~i~~L---~liP 535 (613)
T PF04097_consen 513 FDLYHAGQYEQALDIIEKL---DLIP 535 (613)
T ss_dssp HHHHHTT-HHHHHHHHHHT---T-S-
T ss_pred HHHHHcCCHHHHHHHHHhC---CCCC
Confidence 3457889999999887765 5788
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.69 E-value=8.6 Score=36.92 Aligned_cols=61 Identities=15% Similarity=0.246 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 608 TFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN--EVVYGSLINGFAATGKVEEALQYFRMMR 668 (1004)
Q Consensus 608 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 668 (1004)
.+..+..-|++.|+.+.|++.|.++.+....+. ...+-.+|......+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455666667777777777777777666543333 3445556666666666666666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.42 E-value=72 Score=37.11 Aligned_cols=63 Identities=5% Similarity=0.041 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHH--HHHHccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHH
Q 048751 344 DAANVFAEMLKSGVAVDTITFNTMI--YTCGSHGNLSEAEALFCMME-ESRISPDTKTYNILLSLYA 407 (1004)
Q Consensus 344 ~A~~~~~~m~~~g~~p~~~t~~~ll--~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~~~~~li~~~~ 407 (1004)
+.+...+.|.+..-.| .....+|+ ..|...|++++|++.--... .-.+.++...+.+++.-|.
T Consensus 41 d~l~~IE~lyed~~F~-er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~i 106 (929)
T KOG2062|consen 41 DSLPKIESLYEDETFP-ERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCI 106 (929)
T ss_pred hhHHHHHHHhccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHH
Confidence 3344444444433223 22333333 66778888888877644332 2335566666666655443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.37 E-value=58 Score=36.03 Aligned_cols=101 Identities=8% Similarity=0.072 Sum_probs=53.2
Q ss_pred CCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHH
Q 048751 778 RDVISY-NQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITS 856 (1004)
Q Consensus 778 p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 856 (1004)
|+..++ +.++..+.+.|-..+|...+..+... .+|+...|...+..=.
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~------------------------------ 505 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEK------------------------------ 505 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHh------------------------------
Confidence 554444 55666667777777777777776532 3334434443332100
Q ss_pred HHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 857 VYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 857 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
-...++ ..-+.+.|+.++..-. -|+..|...+..=...|+.+.+-.++.++.+
T Consensus 506 ~~~sc~-l~~~r~~yd~a~~~fg-~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 506 EQESCN-LANIREYYDRALREFG-ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hHhhcC-chHHHHHHHHHHHHhC-CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 001111 2223444454444322 3566666665555577777777777766654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.94 E-value=2.4 Score=27.21 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 748 FAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 748 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
|..++.++...|++++|++.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444455555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.93 E-value=13 Score=36.55 Aligned_cols=117 Identities=12% Similarity=0.028 Sum_probs=70.6
Q ss_pred HhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHH
Q 048751 861 VGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIV-TCINLVGCYGKAGLVEGVKR 939 (1004)
Q Consensus 861 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~l~~~~~~~g~~~~A~~ 939 (1004)
.++++.|+..|-+.+... |..+.-|..-+.++.+..+|+.+..--.+.++ +.||.+ ..-.+..++.....+++|+.
T Consensus 23 ~k~y~~ai~~y~raI~~n-P~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICIN-PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhhchHHHHHHHHHhcC-CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 345556666666666654 22334456666677777778877777777666 677655 34445555666777777777
Q ss_pred HHHHH----HcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 940 IHSQL----KYGKMEPNENLFKAVIDAYRNANREDLADLACQEMR 980 (1004)
Q Consensus 940 ~~~~~----~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 980 (1004)
.+.++ +...+.+...++..|.++=...=...++.++.+++.
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 77665 234455566777777665444444455556555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=85.31 E-value=26 Score=31.07 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=24.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048751 649 NGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEME 706 (1004)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 706 (1004)
..+...|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444445555555555554432 12444445555555555555555555555554444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.98 E-value=55 Score=34.48 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCC--hhHHHHHHHHHHcCCCCCcHHHHHHHH
Q 048751 900 DKALNTFMKMLDQGLEP-DI-VTCINLVGCYGKAGL--VEGVKRIHSQLKYGKMEPNENLFKAVI 960 (1004)
Q Consensus 900 ~~A~~~~~~m~~~g~~p-d~-~t~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~ 960 (1004)
+.+..+|+.+.+.|+.. |. .....++..+..... ...+.++++.+.+.++++....|..++
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 45555666666666655 22 233333332222222 235555666666666666655555544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.84 E-value=2.2 Score=27.48 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 747 SFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 747 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+|..++.+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=84.73 E-value=23 Score=36.37 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048751 153 IRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKN-GVLPTNNTYGMLVDVYGKAGLIKEALLWI 227 (1004)
Q Consensus 153 ~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 227 (1004)
.++.+.+.+..+-.++..+--.+|.+|++.++|....++|+..... +..-|...|...|......|+..-...+.
T Consensus 186 YEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 186 YEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 3444444433333444455555666666666666666666655543 33445555666666666666654444433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.41 E-value=67 Score=34.97 Aligned_cols=65 Identities=14% Similarity=0.007 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWA---NQIVLTSLIKAYSKIGCLEGAKQVYEKMKE 704 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 704 (1004)
...+|..++..+-+.|.++.|...+..+...+... .+.+...-++.+-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777777888888877777776643111 233444445556667777777777776665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.00 E-value=27 Score=31.88 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=8.1
Q ss_pred HHHHhcCCHHHHHHHHhhh
Q 048751 508 DVYAEKGLWAEAETVFYGK 526 (1004)
Q Consensus 508 ~~~~~~g~~~~A~~~~~~~ 526 (1004)
..+...|++++|..+|+++
T Consensus 52 ~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 52 WLLIARGNYDEAARILREL 70 (153)
T ss_pred HHHHHcCCHHHHHHHHHhh
Confidence 3334444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.62 E-value=48 Score=32.74 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=13.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCC
Q 048751 790 FATNGQLRQCGELLHEMLTQK 810 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~~ 810 (1004)
-+..+++.+|+++|++.....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 355677777777777765443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.54 E-value=8.5 Score=42.98 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHH
Q 048751 409 VGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKII 488 (1004)
Q Consensus 409 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 488 (1004)
.|+++.|..++..+. ...-+.++.-+-+.|..++|+++- +|+. .-.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHHH
Confidence 455555555443332 223445556666667766666543 1211 112233455666666555
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 048751 489 FKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKR 527 (1004)
Q Consensus 489 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 527 (1004)
..+. .+..-|..|++...+.|++..|.+.|....
T Consensus 660 a~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 660 AVEA-----NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 4443 233344555555555555555555554433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.54 E-value=40 Score=31.76 Aligned_cols=36 Identities=11% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHH
Q 048751 346 ANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAE 381 (1004)
Q Consensus 346 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 381 (1004)
.+++..+.+.++.|+...+..++..+.+.|++....
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 445555556666666666666777776666654433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.22 E-value=13 Score=41.74 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSL 405 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 405 (1004)
..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. |...-+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~ 730 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLA 730 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHH
Confidence 34567777777777777777776655543 344555555566655555555555554421 222334
Q ss_pred HHhcCCHHHHHHHHHH
Q 048751 406 YADVGNINAALRYYWK 421 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~ 421 (1004)
|...|+++++++++.+
T Consensus 731 ~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 731 YFLSGDYEECLELLIS 746 (794)
T ss_pred HHHcCCHHHHHHHHHh
Confidence 5556666666665543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.08 E-value=1.9 Score=27.77 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
+|..++..|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 577788888888888888888888876
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.48 E-value=9.3 Score=39.44 Aligned_cols=95 Identities=18% Similarity=0.099 Sum_probs=50.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 647 LINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM 726 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (1004)
-.+-|.++|++++|+..|...+.... -|++++..-..+|.+...+..|..=....+..+- .-...|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhh
Confidence 35566777777777777766655421 2666666666677777666666555554443221 112223333333333445
Q ss_pred HHHHHHHHHHHHHcCCC
Q 048751 727 VTEAESMFNDIREKGQV 743 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~ 743 (1004)
..+|.+-++..++..|.
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 55555555555554444
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.20 E-value=64 Score=32.44 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 391 RISPDTKTYNILLSL-YADVGNINAALRYYWKIREVGLFPDSV---TQRAILHILCQRNMVQEAEAVIIEME 458 (1004)
Q Consensus 391 g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~ 458 (1004)
+-.||+..-|..-.. -.+..++++|+.-|++..+........ ...-+|....+.|++++..+.+.+|.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 345665443322211 123456777888887777643222222 22334455555666666555555543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.16 E-value=26 Score=38.32 Aligned_cols=78 Identities=15% Similarity=0.058 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH-------CCCCCCH-----------HHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLD-------QGLEPDI-----------VTCINLVGCYGKAGLVEGVKRIHSQLKY 946 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~g~~pd~-----------~t~~~l~~~~~~~g~~~~A~~~~~~~~~ 946 (1004)
.||.|+-...+.|.+.-+..+|.++++ .|++|.. .+|++ .-.+...|+.-.|.+-|.....
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHH
Confidence 456666666666666666666665552 3555521 13332 2245566777666666655431
Q ss_pred CCCCCcHHHHHHHHHHHH
Q 048751 947 GKMEPNENLFKAVIDAYR 964 (1004)
Q Consensus 947 ~~~~p~~~~~~~l~~~~~ 964 (1004)
-+-.++++|-.|..+|.
T Consensus 364 -vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 364 -VFHRNPRLWLRLAECCI 380 (696)
T ss_pred -HHhcCcHHHHHHHHHHH
Confidence 23345677777777664
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.66 E-value=3.1 Score=28.30 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 884 FIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 884 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
.+++.|+..|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688899999999999999999998875
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.21 E-value=1.3e+02 Score=35.43 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=13.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 048751 647 LINGFAATGKVEEALQYFRMMR 668 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~ 668 (1004)
|+..|...+++..|++++-...
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5556666666666666555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.4 bits (205), Expect = 2e-16
Identities = 99/667 (14%), Positives = 196/667 (29%), Gaps = 218/667 (32%)
Query: 99 VNSRRKKYGGILPSLLRSFESNDDIDNTLNSFCENLSPKEQTVVLKEQKSWERVIRVF-- 156
+ +Y IL +F N D + + LS +E ++ + + +R+F
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 157 ----------EFFKS--QKDY-------------------------------VPNVIHYN 173
+F + + +Y YN
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 174 IVLRALGRAQKWDELR--LRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMK 231
+ R Q + +LR L + AKN ++ G+L GK + + K
Sbjct: 131 VS-----RLQPYLKLRQALLELRPAKNVLI-----DGVL--GSGKTWVALDVC---LSYK 175
Query: 232 LRGIFPDEVT-MNTVVRVLKEVGEFDSADRFYKDWCLGRLELD-DLELDSTDDLGSMPVS 289
++ ++ +N + +S + + L +L D S D S
Sbjct: 176 VQCKMDFKIFWLN--------LKNCNSPETVLEM--LQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 290 FKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYN----TLIDLYGKAGRLQDA 345
H + EL R P LL + N V+ + + +N L+ R +
Sbjct: 226 RIHSIQAELRRLLKSKPYEN--CLLVLLN-VQNAKAWNAFNLSCKILL-----TTRFKQV 277
Query: 346 ANVFAEMLKSGVAVD--TITFNTMIYTCGSHGNLSEAEALF--CM-MEESRISPDTKTYN 400
+ + + +++D ++T E ++L + + + T N
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTP-----------DEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 401 -ILLSLYADVGNINAALRYYWK---------IREVGL-----------------FPDSV- 432
LS+ A+ A WK I E L FP S
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 433 --TQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMY----------INEG 480
T +L ++ + + V+ ++ K L +++ + + NE
Sbjct: 387 IPTI--LLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEY 443
Query: 481 LLHQAKII----FKKCQLDGGLSSKTLAAIIDVY-----------AEKG-LWAEAETVFY 524
LH+ I+ K L L D Y E VF
Sbjct: 444 ALHR-SIVDHYNIPKTFDSDDLIPPYL----DQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 525 GKRDL--VGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTW-----PDECTYNSL 577
D + QK I+ + ++ + S+ ++ L + ++ Y L
Sbjct: 499 ---DFRFLEQK---------IRHDSTA--WNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 578 VQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGV 637
V ++ F P+ + + + Y L +++ L
Sbjct: 545 V-----NAIL-------------DFLPKIEE-NLICSKYTDLLRIA----LMA------- 574
Query: 638 EPNEVVY 644
+E ++
Sbjct: 575 -EDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 5e-08
Identities = 80/565 (14%), Positives = 165/565 (29%), Gaps = 166/565 (29%)
Query: 524 YGKRDL--VGQKKSVVEYNV-----MIKAYGKSKLYD----------KAFSLFKVMKNLG 566
Y +D+ V + V ++ M K+ + D LF + +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 567 TWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAY-ARLGQLSNA 625
+VQ F +++ L K + S + Y + +L N
Sbjct: 76 --------EEMVQKFVE-EVLRINYKFLMS----PIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 626 VDLF-----------HEMRRA--GVEPNEVVYGSLINGFAATGK---VEEALQYFRM--M 667
+F ++R+A + P + V LI+G +GK + +++
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNV---LIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 668 RECGL-WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEME---GGPDTVASNTMISLYAE 723
+ + W N + + V E ++++ T S+ ++
Sbjct: 180 MDFKIFWLN-------------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 724 LGMVTEAESMF-------------NDIREKGQVDAVSFAAMMYLYKTMGMLDEAI-DAAE 769
+ + +++ +A + + + L T + + D
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTR---FKQVTDF-- 280
Query: 770 EMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKL--LPDNGTFKVLFTILKK 827
LS IS + T +++ LL + L + LP
Sbjct: 281 ---LSAATTTHISLDHHSMTL-TPDEVK---SLLLKYLDCRPQDLPR----------EVL 323
Query: 828 GGFPI------EAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYL 881
P E+++ +++ K + + T + S LN L E + +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVL-----EPAEYRKMFD 376
Query: 882 DSFIY--NVAIYAFKSSGKNDKALNTF-MKMLDQGLEPDIVTCIN--LVGCYGKAGLVEG 936
++ + I L+ ++ + + LV K E
Sbjct: 377 RLSVFPPSAHIPT--------ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK----ES 424
Query: 937 VKRIHS-QLKYGKMEPNE-NLFKAVIDAYRNANREDLADLACQEMRTAFESPEHDDSEF- 993
I S L+ NE L ++++D Y D DL P + D F
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL----------IPPYLDQYFY 474
Query: 994 ---------EENSEES------YLN 1003
E+ E +L+
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLD 499
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 7e-06
Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 32/137 (23%)
Query: 95 KSSLVNSRRKKYGGILPSLLRSFESNDDIDNTLNSFCENLSPKEQTVVLKEQKSWERVIR 154
K SLV + K+ +PS+ + + + L+ +++V + + +
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALH----------RSIV--DHYNIPKTFD 460
Query: 155 VFEFFKSQKD-YVPNVIHYNIVLRALGRAQKWDELR-----LRWIE-------MAKNGVL 201
+ D Y + I ++ L+ + ++ R R++E A N
Sbjct: 461 SDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 202 PTNNTYGMLVDV--YGK 216
NT L + Y
Sbjct: 519 SILNT---LQQLKFYKP 532
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.8 bits (200), Expect = 8e-16
Identities = 17/177 (9%), Positives = 51/177 (28%), Gaps = 4/177 (2%)
Query: 289 SFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANV 348
++ L+ L G+ + + + +L A ++
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 349 ---FAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSL 405
+ + +N ++ G E + M++++ ++PD +Y L
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 406 YADVGNINAALRYYW-KIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCG 461
+ ++ + GL ++ +L + +++ V
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPP 266
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.9 bits (190), Expect = 1e-14
Identities = 29/227 (12%), Positives = 67/227 (29%), Gaps = 4/227 (1%)
Query: 448 QEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDG-GLSSKTLAAI 506
Q A + + E + +++ + L + + + L A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 507 IDVYAEKGLWAEAETVFYGKRDLVGQKK--SVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564
A + ++K ++ YN ++ + + + + + ++K+
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 565 LGTWPDECTYNSLVQMFA-GGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLS 623
G PD +Y + +Q G L +M G K Q L + +++ R L
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 624 NAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMREC 670
+ P V L+ A + ++
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.9 bits (182), Expect = 1e-13
Identities = 26/276 (9%), Positives = 71/276 (25%), Gaps = 34/276 (12%)
Query: 497 GLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAF 556
+ LA ++ K + G+ K + A
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPS-GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 557 SLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAY 616
L V + +++V+ +
Sbjct: 148 HLLVVHHG--------------------------------QRQKRKLLTLDMYNAVMLGW 175
Query: 617 ARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQ-YFRMMRECGLWAN 675
AR G V + ++ AG+ P+ + Y + + + ++ M + GL
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
Query: 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFN 735
+ L+ + L+ +V P V ++ ++ +
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295
Query: 736 DIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEM 771
++ + + + +++ ++E+
Sbjct: 296 PLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEV 331
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 4e-08
Identities = 17/192 (8%), Positives = 46/192 (23%), Gaps = 4/192 (2%)
Query: 695 AKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV-DAVSFAAMMY 753
A + + ++ P ++ + ++ + A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 754 LYKTMGMLDEA---IDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQK 810
L A + + L + YN VM +A G ++ +L +
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 811 LLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGT 870
L PD ++ + + +++ + + S +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 871 CETLIKAEAYLD 882
+
Sbjct: 256 HKVKPTFSLPPQ 267
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 2e-07
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 3/99 (3%)
Query: 149 WERVIRVFEFFKSQ--KDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNT 206
+ Q K + + YN V+ R + EL + G+ P +
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 207 YGMLVDVYGKAGLIKEALL-WIKHMKLRGIFPDEVTMNT 244
Y + G+ + ++ M G+ +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.6 bits (119), Expect = 3e-06
Identities = 27/209 (12%), Positives = 65/209 (31%), Gaps = 7/209 (3%)
Query: 68 QKPNRRGPRVSGGFKLQCNSKSTISPTKSSLVNSRRKKYGGILPSLLRSFESNDDIDNTL 127
+ R R+ ++ S + T+ V R +L + +
Sbjct: 35 RTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPR------LLSKQMAGCLEDCTRQAPE 88
Query: 128 NSFCENLSPKEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDE 187
+ + E L+ Q K E+ ++ + +
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 188 LRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVR 247
L + + L T + Y ++ + + G KE + + +K G+ PD ++ ++
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 248 VLKEVG-EFDSADRFYKDWCLGRLELDDL 275
+ + + +R + L+L L
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.0 bits (115), Expect = 7e-06
Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 1/121 (0%)
Query: 868 LGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGC 927
L + L +YN + + G + + + D GL PD+++ + C
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 928 YGKAG-LVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTAFESP 986
G+ ++R Q+ ++ ++ A + P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 987 E 987
Sbjct: 270 P 270
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 2e-08
Identities = 32/234 (13%), Positives = 69/234 (29%), Gaps = 19/234 (8%)
Query: 542 MIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAG 601
+ +AY + Y K + P+ + A V L
Sbjct: 40 LYRAYLAQRKYGVVLDEIK----PSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRS 95
Query: 602 FKPQCLTFSSVIA-AYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEA 660
TF + A Y A+ H+ + +++ A
Sbjct: 96 VDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAM------TVQILLKLDRLDLA 149
Query: 661 LQYFRMMRECGLWANQIVLTSLIKAYSKIGC----LEGAKQVYEKMKEMEGGPDTVASNT 716
+ + M++ LT L A+ + L+ A ++++M + P + N
Sbjct: 150 RKELKKMQD---QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNG 205
Query: 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEE 770
+ + G AE + + +K + ++ L + +G E +
Sbjct: 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLS 259
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 5e-06
Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 12/161 (7%)
Query: 615 AYARLGQLSNAVDLFHEMRRAGVEP-NEVVYGSLINGFAATGKVEEALQYFRMMRECGLW 673
A + V V+ N + + + AL+
Sbjct: 74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECM 133
Query: 674 ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTM---ISLYAELGMVTEA 730
A ++ K+ L+ A++ +KM++ + D + +SL A + +A
Sbjct: 134 AM------TVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDA 185
Query: 731 ESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEM 771
+F ++ +K + + G + A +E
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 55/417 (13%), Positives = 129/417 (30%), Gaps = 75/417 (17%)
Query: 374 HGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVT 433
+ A L ++ I + + +Y ++ N + A Y + +
Sbjct: 180 RKDEKNANKLLM--QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM--VDAKCYE 235
Query: 434 QRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKM----YINEGLLHQAKIIF 489
L +E + V+ D + + + +E L +A+
Sbjct: 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295
Query: 490 KKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKS 549
SS L D + + + + + L ++ Y + + + +S
Sbjct: 296 SSINGLEK-SSDLLLCKADTLFVRSRFIDVLAIT--TKILEIDPYNLDVYPLHLASLHES 352
Query: 550 KLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQC-LT 608
+K + + VD P+ +T
Sbjct: 353 GEKNKLYLISN----------------------------DLVDR---------HPEKAVT 375
Query: 609 FSSVIAAYARLGQLSNAVDLFHEMRRA-GVEPN-EVVYGSLINGFAATGKVEEALQYFR- 665
+ +V Y + ++S A F ++ ++P + + FA G+ ++A+ +
Sbjct: 376 WLAVGIYYLCVNKISEARRYF---SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432
Query: 666 ---MMRECGL-WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGP-DTVASNTMISL 720
+ + L + L + ++G + A + + + D + N + +
Sbjct: 433 AARLFQGTHLPYLF------LGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVV 484
Query: 721 YAELGMVTEAESMFN---DIREKGQVDAVSFAAMMY----LYKTMGMLDEAIDAAEE 770
+ A + F + +K Q + +AA Y+ + M D AIDA +
Sbjct: 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 38/302 (12%), Positives = 77/302 (25%), Gaps = 38/302 (12%)
Query: 476 YINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKS 535
+ + A + +K LD + + VY G +A A+ + + +S
Sbjct: 94 ALMQQQYKCAAFVGEKV-LDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRS 149
Query: 536 VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLA 595
+ K + A +L + DE N L+ G L L
Sbjct: 150 SACRYLAAFCLVKLYDWQGALNLLG--ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 596 EMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG 655
+ Y L A + + E + + L++ T
Sbjct: 208 Q------------------VYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTA 248
Query: 656 KVE----EALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDT 711
E L Y +E + + + S L A+ + +E +
Sbjct: 249 DEEWDLVLKLNYSTYSKEDAAFLRSL-YMLKLNKTSHEDELRRAEDYLSSINGLE--KSS 305
Query: 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL---YKTMGMLDEAIDAA 768
+ ++ I E D + G ++ +
Sbjct: 306 DLLLCKADTLFVRSRFIDVLAITTKILEI---DPYNLDVYPLHLASLHESGEKNKLYLIS 362
Query: 769 EE 770
+
Sbjct: 363 ND 364
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 9e-05
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 14/41 (34%)
Query: 833 EAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALAL-GTCE 872
+A+K+LQ+S +K YA ++ ALA+ T E
Sbjct: 20 QALKKLQAS---LKLYADDSA----------PALAIKATME 47
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 18/158 (11%), Positives = 40/158 (25%), Gaps = 37/158 (23%)
Query: 614 AAYARLGQLSNAVDLFH---EMRRAGVEPNEVVYG--------SLIN-GFA--ATGKVEE 659
G+ + E+ + G + N GK ++
Sbjct: 161 LLCQNQGKYEEVEYYYQRALEIYQT-------KLGPDDPNVAKTKNNLASCYLKQGKFKQ 213
Query: 660 ALQYFR----MMRECGLWAN----QIVLTSLIKAYSKIGCLEGAKQVYEK--MKEMEGG- 708
A ++ E + + + + G + E +
Sbjct: 214 AETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD 273
Query: 709 -PDTVAS-NTMISLYAELGMVTEAESMFN---DIREKG 741
P + + +LY G AE++ R++G
Sbjct: 274 SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQG 311
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 91/632 (14%), Positives = 169/632 (26%), Gaps = 81/632 (12%)
Query: 322 KPRLTSTYNTLIDLYGKAGRLQDAANVF--AEMLKSGVAVDTITFNTMIYTCGSHGNLSE 379
P + +Q V A L V + + +
Sbjct: 290 TPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVV---AIASHDGGKQALETVQR 346
Query: 380 AEALFCMMEESRISPD-TKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAIL 438
+ C ++PD + + L + GL PD V AI
Sbjct: 347 LLPVLCQAHG--LTPDQVVAIASNGGGKQALETVQRLLPVLCQA--HGLTPDQV--VAIA 400
Query: 439 HILCQRNMVQEAEAVIIEMEKCGL---HIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLD 495
++ + + + + GL + + K + + + + +
Sbjct: 401 SNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL--ETVQRLLPVLCQTH-- 456
Query: 496 GGLSSKTLAAII---DVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLY 552
GL+ + AI + V + VV I
Sbjct: 457 -GLTPAQVVAIASHDGGKQALETVQQLLPVL--CQAHGLTPDQVVAIASNIGGKQALATV 513
Query: 553 DKAFSLFKVMKNLGTWPDECT--YNSLVQMFAGGDLMGQAVDLLAEMQGAGFKP-QCLTF 609
+ + + G PD+ ++ A + L Q G P Q +
Sbjct: 514 QRLLPVLC--QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC---QAHGLTPDQVVAI 568
Query: 610 SSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVV-YGSLINGFAATGKVEEALQYFRMMR 668
+S L + + + + G+ +VV S I G A V+ L +
Sbjct: 569 ASNGGGKQALETVQRLLPVLCQA--HGLTQVQVVAIASNIGGKQALETVQRLLPVLC--Q 624
Query: 669 ECGLWANQIV-LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD-TVASNTMISLYAELGM 726
GL Q+V + S + ++ V + PD VA + L
Sbjct: 625 AHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPDQVVAIASNGGGKQALET 682
Query: 727 VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEE---------------- 770
V + Q V+ A+ + + + + +
Sbjct: 683 VQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 742
Query: 771 ---MKLSGLLRDVISYNQVMAC-------FATNGQLRQCGELLHEMLTQKLLPDNG-TFK 819
L + R + Q A+N +Q E + L L D+G T
Sbjct: 743 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQR-LLPVLCQDHGLTLA 801
Query: 820 VLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITS-----VYSVVGLNALALGTCETL 874
+ I G KQ + Q + P +A + + AL T + L
Sbjct: 802 QVVAIASNIGG-----KQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRL 856
Query: 875 IKAEAYLDSFIYNVAIYAFKSSGKNDKALNTF 906
+ + + A S+ +AL T
Sbjct: 857 LPVLCQDHGLTPD-QVVAIASNIGGKQALETV 887
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 9/162 (5%)
Query: 615 AYARLGQLSNAVDLFHEMRRA-GVEPNEV-VYGSLINGFAATGKVEEALQYFRMMRECGL 672
+ + A + + R+A + V + + EEA Q + L
Sbjct: 80 VFQTEMEPKLADEEY---RKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136
Query: 673 WANQ-IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD-TVASNTMISLYAELGMVTEA 730
+ + V +L ++ AK+ +EK + + + M L + A
Sbjct: 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPA 194
Query: 731 ESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772
++ + G +A S + L K D A ++K
Sbjct: 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 42/402 (10%), Positives = 98/402 (24%), Gaps = 79/402 (19%)
Query: 375 GNLSEAEALFCMMEESRISPDTK-----TYNILLSLYADVGNINAALRYYWKIREVGLFP 429
G+ E + +SP + + + N N A++YY + L P
Sbjct: 1 GSHMNGEPDIA--QLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYA--IELDP 56
Query: 430 DSVT---QRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAK 486
+ + +++ I K L I P K + ++
Sbjct: 57 NEPVFYSNISA--CYISTGDLEKV---IEFTTKA-LEIK----PDHSKALLRRASANE-- 104
Query: 487 IIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAY 546
+ ++ ++ + + E + V + + +
Sbjct: 105 ---SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161
Query: 547 GKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQC 606
+ F +F + + Y++ L+ A+ L G+
Sbjct: 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDT------AYALLSDALQRLYSATDEGYL--- 212
Query: 607 LTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRM 666
A DL + +T L +
Sbjct: 213 -----------------VANDLLTK---------------------STDMYHSLLSANTV 234
Query: 667 MRECGLWANQ-IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG 725
L N + L + L A+ + ++ + P + + A+
Sbjct: 235 DDP--LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKE 290
Query: 726 MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDA 767
E F + ++ +Y + A +
Sbjct: 291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1004 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.5 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.39 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.35 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.34 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.34 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.21 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.21 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.17 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.17 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.16 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.09 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.04 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.95 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.93 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.92 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.91 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.91 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.91 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.91 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.91 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.91 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.84 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.82 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.81 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.77 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.75 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.75 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.73 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.67 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.65 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.62 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.61 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.6 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.6 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.55 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.54 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.54 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.52 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.5 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.5 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.44 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.44 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.44 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.42 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.42 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.42 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.41 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.41 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.41 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.4 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.39 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.39 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.39 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.39 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.37 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.36 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.36 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.33 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.3 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.26 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.26 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.25 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.24 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.23 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.23 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.19 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.17 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.17 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.16 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.16 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.15 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.09 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.08 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.07 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.03 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.0 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.97 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.96 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.96 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.95 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.95 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.93 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.93 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.93 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.91 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.88 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.87 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.86 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.85 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.85 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.83 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.79 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.7 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.66 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.64 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.61 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.59 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.58 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.58 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.54 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.43 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.41 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.39 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.3 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.24 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.24 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.14 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.04 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.77 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.56 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.52 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.5 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.42 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.37 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.29 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.19 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.17 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.05 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.68 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.65 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.59 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.53 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.35 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.24 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.02 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.82 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.62 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.52 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.39 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.15 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.51 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.6 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.25 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.03 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.93 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.74 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 89.49 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.0 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.24 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.09 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.74 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.69 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.23 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.97 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.47 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.6 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.84 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.8 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.7 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.41 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 80.92 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=375.73 Aligned_cols=498 Identities=11% Similarity=0.005 Sum_probs=282.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 048751 166 VPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTV 245 (1004)
Q Consensus 166 ~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 245 (1004)
.+++..|+.++..+.+.|++++|..+|++|.+ ..|+..++..++.+|.+.|++++|+.+|+++... .++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 35788899999999999999999999999985 3567788889999999999999999999988654 6788899999
Q ss_pred HHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhccc------CCC
Q 048751 246 VRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDM------GNS 319 (1004)
Q Consensus 246 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 319 (1004)
+.+|.+.|++++|.++|+++. |. . .... ...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~--------------------~~---------------------~--~~~~~~~~~~~~~ 193 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETN--------------------PF---------------------R--KDEKNANKLLMQD 193 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSC--------------------TT---------------------C------------CCC
T ss_pred HHHHHHHhhHHHHHHHHhccC--------------------Cc---------------------c--ccccccccccccc
Confidence 999999999999999886410 00 0 0000 000
Q ss_pred CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHH--HH-HHHHHHCCCCCCH
Q 048751 320 VRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAE--AL-FCMMEESRISPDT 396 (1004)
Q Consensus 320 ~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~--~l-~~~m~~~g~~p~~ 396 (1004)
...|.+..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 011345677777777777777777777777777765421 3444444544443332222211 11 4444444444445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Q 048751 397 KTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMY 476 (1004)
Q Consensus 397 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 476 (1004)
.+|+.++..|.+.|++++|.++|+++.+. .++..+|+.++..+.+.|++++|.++|+++.+.+.. +..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHH
Confidence 56666677777777777777777777654 366777777777777777777777777777655432 444455555555
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 048751 477 INEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAF 556 (1004)
Q Consensus 477 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 556 (1004)
...|++++|..+++++....+.+ ..+|+.++..|.+.|++++|.
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPEK------------------------------------AVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTS------------------------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhCccc------------------------------------HHHHHHHHHHHHHhccHHHHH
Confidence 55555555555544444333333 333444444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 048751 557 SLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAG 636 (1004)
Q Consensus 557 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 636 (1004)
++|+++.+... .+..+|+.++.++.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44444433211 123333333333333344444444444333322 2344455555555555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048751 637 VEPNEVVYGSLINGFAATGKVEEALQYFRMMREC----GLWAN--QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD 710 (1004)
Q Consensus 637 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 710 (1004)
+.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.++ .+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 549 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-ND 549 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CC
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CC
Confidence 234555555555555555555555555555433 33343 34444555555555555555555554444331 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
..+|..++.+|.+.|++++|.+.|+++.+..|.+..++..+..+
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 44445555555555555555555555555544444444444443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=368.97 Aligned_cols=474 Identities=10% Similarity=-0.031 Sum_probs=316.8
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 048751 143 LKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKE 222 (1004)
Q Consensus 143 l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 222 (1004)
+.+.++++.|+.+|+.+.. ..|+..+++.++.+|.+.|++++|..+|+++... +++..+++.++.+|.+.|++++
T Consensus 94 ~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 168 (597)
T 2xpi_A 94 ALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQG 168 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHH
Confidence 3357899999999999874 3578899999999999999999999999998643 6788999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhh--HHHhHHHHh
Q 048751 223 ALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFK--HFLSTELFR 300 (1004)
Q Consensus 223 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 300 (1004)
|+.+|+++. |+.. ...++.+.+..+. + .+.... ..+.....+
T Consensus 169 A~~~~~~~~-----~~~~----~~~~~~~~~~~~~--------------------------~-~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 169 ALNLLGETN-----PFRK----DEKNANKLLMQDG--------------------------G-IKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHCSSC-----TTC--------------CCCS--------------------------S-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccC-----Cccc----ccccccccccccc--------------------------c-cchhHHHHHHHHHHHHH
Confidence 999998532 2220 0111111111100 0 111111 122333444
Q ss_pred cCCCCccccchh-hcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHH--H-HHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 048751 301 TGGRNPISRNMG-LLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAAN--V-FAEMLKSGVAVDTITFNTMIYTCGSHGN 376 (1004)
Q Consensus 301 ~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 376 (1004)
.|.. ..++. +..+. ...|.+..++..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|+
T Consensus 213 ~g~~---~~A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 287 (597)
T 2xpi_A 213 LSNF---DRAKECYKEAL--MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287 (597)
T ss_dssp TTCH---HHHHHHHHHHH--HHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH
T ss_pred cCCH---HHHHHHHHHHH--HhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch
Confidence 4422 22232 22221 2346667777777766655444333222 2 6666666666677788888999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 377 LSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIE 456 (1004)
Q Consensus 377 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (1004)
+++|.++|+++.+. +++..+|+.++.+|.+.|++++|..+|+++.+.+. .+..+|..++.++.+.|++++|.+++++
T Consensus 288 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 288 LRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999876 57999999999999999999999999999998653 3678899999999999999999999999
Q ss_pred HHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCH
Q 048751 457 MEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSV 536 (1004)
Q Consensus 457 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 536 (1004)
+.+.. ..+..++..++.+|.+.|++++|.++|+++....+.+..++..++.+|.+.|++++|..+|+++.+. .+.+.
T Consensus 365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 441 (597)
T 2xpi_A 365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTH 441 (597)
T ss_dssp HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCS
T ss_pred HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cccch
Confidence 98654 2356677888888888888888888888887766666666666666666666666666666666553 33455
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCCC--HHHHH
Q 048751 537 VEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGA----GFKPQ--CLTFS 610 (1004)
Q Consensus 537 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~--~~~~~ 610 (1004)
.+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.++..+.+.|++++|.++|+++.+. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 5666666666666666666666666655432 24555555555555555555555555555443 33444 44555
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 611 SVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMREC 670 (1004)
Q Consensus 611 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 670 (1004)
.++.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++++|.++|+++.+.
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 55555555555555555555554442 234455555555555555555555555555543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-25 Score=250.48 Aligned_cols=362 Identities=13% Similarity=0.069 Sum_probs=242.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCCh
Q 048751 473 MKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLY 552 (1004)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 552 (1004)
...+...|++++|.+.++++....|.+..++..++..+...|++++|...+...... .+.+...|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 445556666777777666666666666667777777777777777777777666653 455666777777777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 048751 553 DKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEM 632 (1004)
Q Consensus 553 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 632 (1004)
++|+..|+++.+..+ .+..+|..+..++...|++++|...|+.+.+.. +.+...+..+...+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777766432 134566667777777777777777777766643 233445566666677777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 048751 633 RRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTV 712 (1004)
Q Consensus 633 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 712 (1004)
.+.. +.+..+|..+...+...|++++|+..|+++.+.++ .+...+..+...+...|++++|...+++.....+. +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 6652 33466777777777777777777777777776543 34566667777777777777777777776664432 566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT 792 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 792 (1004)
++..++.++.+.|++++|+..|+++.+..|.++.+|..++.++.+.|++++|+..++++.+... .+..++..+...+..
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHH
Confidence 6677777777777777777777777777777777777777777777777777777777776532 456677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhh
Q 048751 793 NGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQ 843 (1004)
Q Consensus 793 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 843 (1004)
.|++++|...++++++. .+.+..++..+..++.+.|+.++|...++++++
T Consensus 318 ~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777777777543 223344566666666666666666665555544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-25 Score=247.94 Aligned_cols=382 Identities=15% Similarity=0.121 Sum_probs=213.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048751 332 LIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGN 411 (1004)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 411 (1004)
+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4556677778888887777776653 1234455555666777777777777777776653 3356677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHH
Q 048751 412 INAALRYYWKIREVGLFPD-SVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFK 490 (1004)
Q Consensus 412 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 490 (1004)
+++|...|+++.+. .|+ ..+|..+..++.+.|++++|.+.++++.+.
T Consensus 83 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------------ 130 (388)
T 1w3b_A 83 LQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY------------------------------ 130 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------------
Confidence 77777777777764 343 445666666666666666666666665543
Q ss_pred HhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 048751 491 KCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPD 570 (1004)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 570 (1004)
.|....++..++..+...|++++|...|.++... .+.+..+|+.+...+.+.|++++|+..|+++.+.++. +
T Consensus 131 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~ 202 (388)
T 1w3b_A 131 -----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-F 202 (388)
T ss_dssp -----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-C
T ss_pred -----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-c
Confidence 2333334444455555555555555555554442 3334455555555555555555555555555553321 3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048751 571 ECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLING 650 (1004)
Q Consensus 571 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 650 (1004)
...+..+...+...|++++|...+.++.... +.+..++..+...|.+.|++++|+..|+++.+.+ +.+..+|..+...
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3444445555555555555555555544432 2234455555555555555555555555555432 2234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 651 FAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEA 730 (1004)
Q Consensus 651 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 730 (1004)
+.+.|++++|++.|+++.+.. +.+..++..+...+.+.|++++|...++++.+..+ .+..++..++.+|.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555555442 23444555555555555555555555555544322 2344555555555555555555
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 048751 731 ESMFNDIREKGQVDAVSFAAMMYLYKTMG 759 (1004)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 759 (1004)
...|+++.+..|.+..+|..++..+...|
T Consensus 359 ~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 359 LMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 55555555555555555555555544443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=268.67 Aligned_cols=215 Identities=13% Similarity=0.144 Sum_probs=154.5
Q ss_pred HHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHh
Q 048751 187 ELRLRWIEMAKNGVLPTN-NTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDW 265 (1004)
Q Consensus 187 ~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 265 (1004)
.+..+..++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||.+||++||.+|++.+....+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 445566677777765544 458899999999999999999999999999999999999999999876542110
Q ss_pred cccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHH
Q 048751 266 CLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDA 345 (1004)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A 345 (1004)
.+.+.++.|
T Consensus 81 -----------------------------------------------------------------------~~~~~l~~A 89 (501)
T 4g26_A 81 -----------------------------------------------------------------------SPNPGLSRG 89 (501)
T ss_dssp -----------------------------------------------------------------------SCCHHHHHH
T ss_pred -----------------------------------------------------------------------hhcchHHHH
Confidence 112345667
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048751 346 ANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREV 425 (1004)
Q Consensus 346 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 425 (1004)
.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhc
Q 048751 426 GLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINE 479 (1004)
Q Consensus 426 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 479 (1004)
|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..|+..++..++..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 777777777777777777777777777777777777777777777777777654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=259.92 Aligned_cols=189 Identities=15% Similarity=0.213 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC---------hHHHHHHHHHHHhCCCCCCH
Q 048751 536 VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDL---------MGQAVDLLAEMQGAGFKPQC 606 (1004)
Q Consensus 536 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~m~~~g~~~~~ 606 (1004)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 345888999999999999999999999999999999999999999987654 68899999999999999999
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 607 LTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAY 686 (1004)
Q Consensus 607 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 686 (1004)
.+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 687 SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
++.|+.++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-22 Score=230.07 Aligned_cols=441 Identities=11% Similarity=0.003 Sum_probs=278.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSL 405 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 405 (1004)
...|..+...+.+.|++++|+..|+++.+.. |+..+|..+..++.+.|++++|.+.++++.+.+ +.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 5678889999999999999999999999875 789999999999999999999999999999875 3366899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHH---HhcCCH
Q 048751 406 YADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMY---INEGLL 482 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~---~~~g~~ 482 (1004)
|.+.|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..++........... ......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998753 344444555555554444444444443333332222111111000000 000111
Q ss_pred HHHHHHHHHhhh-------cCCCCHHHHHHHHHHHHh---cCCHHHHHHHHhhhhh-----hcCC-------CCCHHHHH
Q 048751 483 HQAKIIFKKCQL-------DGGLSSKTLAAIIDVYAE---KGLWAEAETVFYGKRD-----LVGQ-------KKSVVEYN 540 (1004)
Q Consensus 483 ~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~~-------~~~~~~~~ 540 (1004)
......+..... ..+.+...+..++..+.. .|++++|...|.++.+ .... +.+...|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111100 002224455555555554 6777777777776654 1101 22344566
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 541 VMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLG 620 (1004)
Q Consensus 541 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 620 (1004)
.+...+...|++++|...|+++.+... +..++..+...+...|++++|...++.+.+.. +.+..++..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 667777777777777777777766543 36666667777777777777777777776643 345556667777777777
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 621 QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYE 700 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 700 (1004)
++++|...|+++.+.. +.+...+..+...+...|++++|+.+++.+.+... .+..++..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777776643 33456666677777777777777777777666432 345566666677777777777777777
Q ss_pred HHHhCCCC-CC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 701 KMKEMEGG-PD----TVASNTMISLYAE---LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 701 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
++.+.... ++ ..++..++.++.. .|++++|...|+++.+..|.+..++..++.+|...|++++|...++++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66553221 11 2356666666766 6777777777777777666666777777777777777777777777776
Q ss_pred HCC
Q 048751 773 LSG 775 (1004)
Q Consensus 773 ~~~ 775 (1004)
+..
T Consensus 477 ~~~ 479 (514)
T 2gw1_A 477 DLA 479 (514)
T ss_dssp HHC
T ss_pred Hhc
Confidence 643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-22 Score=235.51 Aligned_cols=443 Identities=9% Similarity=-0.073 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Q 048751 397 KTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMY 476 (1004)
Q Consensus 397 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 476 (1004)
..+..+...+.+.|++++|+..|+++.+.. |+...|..+..++.+.|++++|...++++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al------------------ 66 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKAL------------------ 66 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh------------------
Confidence 344555555556666666666666665533 455555555555555555555555555544
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 048751 477 INEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAF 556 (1004)
Q Consensus 477 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 556 (1004)
...|.+..++..++.+|...|++++|...|..+... .+++......++..+........+.
T Consensus 67 -----------------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (514)
T 2gw1_A 67 -----------------ELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN--GDFNDASIEPMLERNLNKQAMSKLK 127 (514)
T ss_dssp -----------------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSCCGGGTHHHHHHHHHHHHHHHHT
T ss_pred -----------------ccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCccchHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666666666666666665543 2222222333333333322222333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHH---cCCHhH
Q 048751 557 SLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGF---------KPQCLTFSSVIAAYAR---LGQLSN 624 (1004)
Q Consensus 557 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~---------~~~~~~~~~li~~~~~---~g~~~~ 624 (1004)
+.+..+...+..|+...+..................+...+..... +.+...+......+.. .|++++
T Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (514)
T 2gw1_A 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDK 207 (514)
T ss_dssp TC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred HHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHH
Confidence 3332222222222221111111000011111111111111111000 1123334444444443 677777
Q ss_pred HHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048751 625 AVDLFHEMRR-----AGV--------EPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGC 691 (1004)
Q Consensus 625 A~~~~~~m~~-----~g~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 691 (1004)
|...|+++.+ ..- +.+..++..+...+...|++++|+.+++.+.+.... ...+..+...+...|+
T Consensus 208 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~ 285 (514)
T 2gw1_A 208 ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRND 285 (514)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCC
Confidence 7777777766 211 112455666777777777777777777777665432 6666677777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 692 LEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
+++|...++.+.+.... +..++..++..+...|++++|...|+++.+..|.+..++..++.++...|++++|+..++++
T Consensus 286 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 286 STEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp CTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777665432 45566667777777777777777777777777767777777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccC
Q 048751 772 KLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLL-PD----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVK 846 (1004)
Q Consensus 772 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 846 (1004)
.+... .+..++..+...+...|++++|...++++.+.... ++ ...+..+.
T Consensus 365 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~------------------------ 419 (514)
T 2gw1_A 365 KRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA------------------------ 419 (514)
T ss_dssp HHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH------------------------
T ss_pred HHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH------------------------
Confidence 66432 23556666777777777777777777766442100 00 11333333
Q ss_pred CchhhhHHHHHHHH---HhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 048751 847 PYASEAIITSVYSV---VGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDI 918 (1004)
Q Consensus 847 ~~~~~~~~~~l~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 918 (1004)
..+.. .|++++|++.++++++.. |.+..++..++.+|...|++++|.+.|+++++ +.|+.
T Consensus 420 ---------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~ 482 (514)
T 2gw1_A 420 ---------TLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTM 482 (514)
T ss_dssp ---------HHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSH
T ss_pred ---------HHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hcccc
Confidence 33444 555555666666666554 34677888888899999999999999998887 46653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-17 Score=198.77 Aligned_cols=288 Identities=12% Similarity=0.051 Sum_probs=178.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHH---------------------------HHHHHHcCCHHHH
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGL--WANQIVLTSL---------------------------IKAYSKIGCLEGA 695 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l---------------------------i~~~~~~g~~~~A 695 (1004)
...+.+|...|.+.+|++++++..-.+- .-+...-+.+ ...+...|.+++|
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEA 1068 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHH
Confidence 4456677778888888888887773311 0111111212 3344556667777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 696 KQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
..+|++.. ......+.+ +...|++++|.++.+++ .++.+|..++.++...|++++|+..|.+.
T Consensus 1069 f~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1069 FAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 77776642 111122222 22556677776666644 45778888888888888888888888664
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHH
Q 048751 776 LLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIIT 855 (1004)
Q Consensus 776 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 855 (1004)
.|...|..++.++.+.|++++|.+++...++.. +++.....++.+|.+.+++++...+++ .+.......++
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-----~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVG 1202 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-----CCCHHHHHHHH
Confidence 566777888888888888888888888776543 333333347777888877775444432 22223334566
Q ss_pred HHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 048751 856 SVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVE 935 (1004)
Q Consensus 856 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~ 935 (1004)
..+...|++++|...|.++ ..|..++.+|.+.|++++|++.+++.. |..+|..+..+|...|.+.
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHH
Confidence 6777888888888888864 368888888888888888888887762 3455555555555555555
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 048751 936 GVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQE 978 (1004)
Q Consensus 936 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 978 (1004)
.|...... +.-++..+..++..|.+.|.+++|..+++.
T Consensus 1268 LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1268 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55443321 222334444555555555555555555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-17 Score=191.69 Aligned_cols=567 Identities=12% Similarity=0.104 Sum_probs=321.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 330 NTLIDLYGKAGRLQDAANVFAEMLKSGV--AVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYA 407 (1004)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 407 (1004)
...+++|...|.+.+|++++++..-.+- .-+...-+.|+.+..+. +..+..+..+..... + ..-+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 5566677777777777777777763210 11223344444444444 445555555544421 1 233556666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHH
Q 048751 408 DVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKI 487 (1004)
Q Consensus 408 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 487 (1004)
..|.+++|..+|++... .....+.++. ..|++++|.++.++.. ++.+|..++.++...|++++|..
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 77777777777776421 1112222222 5566777777766441 35666777777777777777777
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 048751 488 IFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGT 567 (1004)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 567 (1004)
.|.+. .++..+..++..+.+.|++++|.+.+...++. .++....+.++.+|.+.+++++.... .+
T Consensus 1127 sYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~f----I~--- 1191 (1630)
T 1xi4_A 1127 SYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEF----IN--- 1191 (1630)
T ss_pred HHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHH----Hh---
Confidence 77654 55666777777777777777777777666552 23322233466677777766642222 21
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048751 568 WPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSL 647 (1004)
Q Consensus 568 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 647 (1004)
.++...|..+...|...|++++|..+|..+ ..|..+..+|++.|+++.|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 245556666777777777777777777664 25677777777777777777777655 245677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--C
Q 048751 648 INGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL--G 725 (1004)
Q Consensus 648 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g 725 (1004)
..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... .-....|+-+..+|++- +
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 77777777777776655432 2344556677777777777777777776666544 23444555555555543 3
Q ss_pred CHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCCCCHHHHHHHH
Q 048751 726 MVTEAESMFNDIREKGQ-----VDAVSFAAMMYLYKTMGMLDEAIDAA-------------EEMKLSGLLRDVISYNQVM 787 (1004)
Q Consensus 726 ~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~p~~~~~~~l~ 787 (1004)
+..++.++|..-....+ .+...|..++..|.+.|+++.|+... .+.+. -..|+..|...+
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai 1408 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAI 1408 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHH
Confidence 45556666554443322 35566777777777777777776322 11111 124566666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhH--
Q 048751 788 ACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNA-- 865 (1004)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 865 (1004)
..|. +...+++.-+...+...+. +...+..+.+.|...-+..+++...... ....+..+..++....+++
T Consensus 1409 ~Fyl--~~~P~~lndLl~~l~~rlD-----~~R~V~l~~~~~~l~lik~yl~~vq~~n-~~~Vneal~el~ieeed~~~L 1480 (1630)
T 1xi4_A 1409 QFYL--EFKPLLLNDLLMVLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHN-NKSVNESLNNLFITEEDYQAL 1480 (1630)
T ss_pred HHHH--hhChHHHHHHHHHhhhcCC-----hHHHHHHHHHcCChHHhHHHHHHHHHhc-chhhhHHHHHHhcCccchHHH
Confidence 6666 2233333333333322222 2345556667777777766666554322 2222333444444444433
Q ss_pred -hhhhHHH---HH-HhhhccC-Cchh-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 048751 866 -LALGTCE---TL-IKAEAYL-DSFI-YNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAGLVEGVK 938 (1004)
Q Consensus 866 -~A~~~~~---~~-~~~~~~~-~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~ 938 (1004)
..++.++ ++ +...... +..- --.....|.+.|+|.+|.+++.+.. . |.-.+.+..++|+.+.++
T Consensus 1481 r~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~---l------~~dAm~~a~~S~d~e~~e 1551 (1630)
T 1xi4_A 1481 RTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS---L------YKDAMQYASESKDTELAE 1551 (1630)
T ss_pred HHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---C------HHHHHHHHHHcCCHHHHH
Confidence 1222221 11 1110011 1111 2223345666788888888887642 2 234456777888888888
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 048751 939 RIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLAC 976 (1004)
Q Consensus 939 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 976 (1004)
+++.-.... -+.++|-..+-.|...=+.+.++++.
T Consensus 1552 ~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle~a 1586 (1630)
T 1xi4_A 1552 ELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLETA 1586 (1630)
T ss_pred HHHHHHHhc---CChhHHHHHHHHHhccCCchHHHHHH
Confidence 887776532 34556666666666667777776653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-21 Score=223.47 Aligned_cols=436 Identities=14% Similarity=0.059 Sum_probs=324.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSL 405 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 405 (1004)
...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 5678999999999999999999999999875 3477889999999999999999999999999875 3367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHhcCCHH
Q 048751 406 YADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGL--HIDEHSVPGVMKMYINEGLLH 483 (1004)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~ 483 (1004)
+...|++++|...|+ ... ..|+.. ...+..+...+...+|...++++..... ..........+..+....+..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~--~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLS--LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHh--cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 333 223322 2234456666777889999998865421 112222344455566666666
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHhhhhhhcCCCCC-------HHHHHHHHHHHHc
Q 048751 484 QAKIIFKKCQLDGGLSSKTLAAIIDVYAE--------KGLWAEAETVFYGKRDLVGQKKS-------VVEYNVMIKAYGK 548 (1004)
Q Consensus 484 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~ 548 (1004)
.+...+.......+........+...+.. .|++++|..+|+.+.+. .+.+ ..+|..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHh
Confidence 66655554444334333344444444333 35788888888888764 2222 2346667777888
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 048751 549 SKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDL 628 (1004)
Q Consensus 549 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 628 (1004)
.|++++|...|+++.+.. |+..++..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 899999999999988854 557788888888889999999999999888754 45677888888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-
Q 048751 629 FHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG- 707 (1004)
Q Consensus 629 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 707 (1004)
|+++.+.. +.+...|..+...+...|++++|+++++.+.+... .+...+..+...+...|++++|...++++.+...
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99888764 34567888888899999999999999998887643 4566888888888999999999999988765432
Q ss_pred ----CCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 708 ----GPDTVASNTMISLYAEL----------GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 708 ----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
......+..+..++... |++++|...|+++.+..|.+..++..++.+|...|++++|+..|+++.+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11223344556677777 8999999999999988888888999999999999999999999999888
Q ss_pred CC
Q 048751 774 SG 775 (1004)
Q Consensus 774 ~~ 775 (1004)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 54
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=228.54 Aligned_cols=254 Identities=10% Similarity=-0.007 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048751 656 KVEEALQYFRMMRECGLWAN-------QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVT 728 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 728 (1004)
++++|+.+++.+.+... .+ ..++..+...+...|++++|...++.+.+.. |+...+..+...+...|+++
T Consensus 217 ~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHH
Confidence 55566666666655432 11 1234445555566666666666666666543 33555666666666666666
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 729 EAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 729 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+|...|+++.+..|.+..+|..++.++...|++++|+..++++.+... .+...|..+...+...|++++|...++++.+
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666432 2345566666666666666666666666654
Q ss_pred CCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh-------hhHHHHHHHHH----------hhhHhhhhHH
Q 048751 809 QKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS-------EAIITSVYSVV----------GLNALALGTC 871 (1004)
Q Consensus 809 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-------~~~~~~l~~~~----------~~~~~A~~~~ 871 (1004)
.. +.+...+..+...+...|++++|...++++++..+.... ....+.++... |++++|++.+
T Consensus 373 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 373 KF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp HC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 31 223445555666666666666666666666654432211 11123455666 8999999999
Q ss_pred HHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 872 ETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 872 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
+++++.. |.+..+|..++.+|...|++++|++.|+++++ +.|+
T Consensus 452 ~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~ 494 (537)
T 3fp2_A 452 TKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LART 494 (537)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC
Confidence 9998886 45778899999999999999999999999988 4553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-20 Score=215.11 Aligned_cols=323 Identities=13% Similarity=0.059 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048751 571 ECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLING 650 (1004)
Q Consensus 571 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 650 (1004)
...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|+..|+++.+.+ +.+...+..++.+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 3445555555555555555555555555432 3344555555555555555555555555555442 2234555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 651 FAATGKVEEALQYFRMMRECGLWANQ---IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMV 727 (1004)
Q Consensus 651 ~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 727 (1004)
|...|++++|.++|+.+.+... .+. ..+..++..+.. ..+..+...+.+.|++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCH
Confidence 5555555555555555554321 122 333333222000 0011123335555666
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 728 TEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 728 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
++|...|+++.+..|.+..++..++.+|...|++++|+..++++.+... .+..+|..++..+...|++++|+..++++.
T Consensus 160 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666555555555566666666666666666666665554321 235555555556666666666666666554
Q ss_pred HCCCCCChhh-HHHH------------HHHHHcCCCcHHHHHHHHhHhhccCCchh-----hhHHHHHHHHHhhhHhhhh
Q 048751 808 TQKLLPDNGT-FKVL------------FTILKKGGFPIEAVKQLQSSYQEVKPYAS-----EAIITSVYSVVGLNALALG 869 (1004)
Q Consensus 808 ~~~~~p~~~~-~~~l------------~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~A~~ 869 (1004)
.. .|+... +..+ ...+.+.|++++|+..++++++..+..+. ...++.++...|++++|++
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 32 232222 1111 33444444444444444444443333211 1222334455555555555
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 048751 870 TCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCINLV 925 (1004)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~ 925 (1004)
.++++++.. |.+..+|..++.+|...|++++|...|+++++ +.|+ ..++..+.
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 555555553 33566777777777777777777777777766 4563 44555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-20 Score=212.24 Aligned_cols=314 Identities=10% Similarity=0.018 Sum_probs=204.5
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 048751 487 IIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLG 566 (1004)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 566 (1004)
..+.......|.+...+..++..|.+.|++++|...|..+.+. .+.+...|..+..++...|++++|+..|+++.+.+
T Consensus 13 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 13 LGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3344444445555556666666666666666666666665553 44455566666666666666666666666666544
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHHcCCHhHHHHHHHH
Q 048751 567 TWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQC---LTFSSV------------IAAYARLGQLSNAVDLFHE 631 (1004)
Q Consensus 567 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~ 631 (1004)
.. +..++..+..++...|++++|...|+.+.+.. +.+. ..+..+ ...+.+.|++++|+..|++
T Consensus 91 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 91 MD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 32 45556666666666666666666666666532 1122 333333 3446777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 048751 632 MRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDT 711 (1004)
Q Consensus 632 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 711 (1004)
+.+.. +.+...+..++.+|...|++++|+++|+.+.+... .+..++..++..+...|++++|...++++.+.... +.
T Consensus 169 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 245 (450)
T 2y4t_A 169 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HK 245 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hH
Confidence 77653 34567777777777777777777777777766532 45677777777777777777777777777764432 34
Q ss_pred HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 712 VASNTM------------ISLYAELGMVTEAESMFNDIREKGQVDA----VSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 712 ~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
..+..+ +..+.+.|++++|...|+++.+..|.+. ..|..++.++.+.|++++|+..++++.+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 444443 6778888888888888888888777663 367778888888888888888888887754
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 776 LLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 776 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
. .+..+|..++.+|...|++++|...++++++
T Consensus 326 p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 326 P-DNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2 3477788888888888888888888888875
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-18 Score=186.53 Aligned_cols=326 Identities=15% Similarity=0.083 Sum_probs=193.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 609 FSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK 688 (1004)
Q Consensus 609 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 688 (1004)
+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|+..++.+.+... .+...+..+...+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHH
Confidence 3344444444444444444444444332 22344444444444444444444444444444321 233444444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGG--PDTVASN------------TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
.|++++|...++++.+.... .+...+. .++..+...|++++|...++++.+..|.+..++..++.+
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44444444444444433210 0222222 235777888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHcCCCcHH
Q 048751 755 YKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGT-FKVLFTILKKGGFPIE 833 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~ 833 (1004)
+...|++++|+..++++.+... .+..++..+...+...|++++|...+++..+. .|+... +..+... .
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~-~------- 232 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQV-K------- 232 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH-H-------
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHH-H-------
Confidence 8888888888888888887542 35777888888888888888888888888654 233222 1111000 0
Q ss_pred HHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCc----hhHHHHHHHHHhcCChHHHHHHHHHH
Q 048751 834 AVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDS----FIYNVAIYAFKSSGKNDKALNTFMKM 909 (1004)
Q Consensus 834 A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 909 (1004)
........+..+...|++++|++.++++++..+. +. ..+..++.+|...|++++|++.++++
T Consensus 233 -------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 298 (359)
T 3ieg_A 233 -------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298 (359)
T ss_dssp -------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 0000111233455556666666666666665432 22 23555777888888888888888888
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHh
Q 048751 910 LDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRN 965 (1004)
Q Consensus 910 ~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 965 (1004)
++ ..| +..++..+..++...|++++|...++++.. +.|+ ..++..+..+...
T Consensus 299 ~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 299 LQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred HH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHH
Confidence 77 355 577788888888888888888888887763 4565 5566666665544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-18 Score=185.83 Aligned_cols=296 Identities=14% Similarity=0.050 Sum_probs=144.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcC
Q 048751 470 PGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKS 549 (1004)
Q Consensus 470 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 549 (1004)
..+...+...|++++|...|++++...|.++.++..++.++...|++++|...|.++.+. .+.+...|..+...+...
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHc
Confidence 334444445555555555555555555555555555555555555555555555555543 333445555555555555
Q ss_pred CChhHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048751 550 KLYDKAFSLFKVMKNLGTWP----DECTYNSL------------VQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVI 613 (1004)
Q Consensus 550 g~~~~A~~l~~~m~~~g~~p----~~~t~~~l------------l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 613 (1004)
|++++|...|+++.+.. | +...+..+ ...+...|++++|...++.+.+.. +.+..++..+.
T Consensus 85 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp TCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 55555555555555532 2 11222222 344445555555555555554432 23444555555
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH------------H
Q 048751 614 AAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLT------------S 681 (1004)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~------------~ 681 (1004)
..+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+... .+...+. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555432 23445555555555555555555555555554321 1222211 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDT----VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
+...+.+.|++++|...++++.+.... +. ..+..+..++.+.|++++|...++++.+..|.++.+|..++.+|..
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 133344455555555555554443322 11 1122344445555555555555555555545555555555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 048751 758 MGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~ 773 (1004)
.|++++|+..|+++.+
T Consensus 319 ~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQE 334 (359)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5555555555555554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-17 Score=178.97 Aligned_cols=202 Identities=11% Similarity=-0.024 Sum_probs=153.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 603 KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSL 682 (1004)
Q Consensus 603 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 682 (1004)
+.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|..+++++.+... .+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 4455566777777888888888888888887653 34455666677777888888888888888877543 356677777
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 683 IKAYSKIG-CLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 683 i~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
...+...| ++++|...++++.+.... +...|..++.++...|++++|...|+++.+..|.+...+..++.+|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 78888888 888888888888775543 5567778888888888888888888888888877777777788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 762 DEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
++|+..++++.+... .+...+..+...+...|++++|...++++++
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 888888888877542 3467777888888888888888888887754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-15 Score=174.51 Aligned_cols=368 Identities=13% Similarity=0.036 Sum_probs=224.8
Q ss_pred CHHHHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCH
Q 048751 570 DECTYNSLVQMFAG----GDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYAR----LGQLSNAVDLFHEMRRAGVEPNE 641 (1004)
Q Consensus 570 ~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~ 641 (1004)
+...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44455555555554 556666666666665543 34455555555655 566666666666665543 44
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 048751 642 VVYGSLINGFAA----TGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK----IGCLEGAKQVYEKMKEMEGGPDTVA 713 (1004)
Q Consensus 642 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 713 (1004)
..+..|...|.. .+++++|++.|+...+.| +...+..|...|.. .+++++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555555555555 556666666666665543 34455555555554 556666666666665542 4555
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 714 SNTMISLYAE----LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT----MGMLDEAIDAAEEMKLSGLLRDVISYNQ 785 (1004)
Q Consensus 714 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 785 (1004)
+..+...|.. .+++++|.+.|++..+.+ ++.++..++..|.. .+++++|+.+|++..+.| +...+..
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 5566666665 566666666666665543 44555566666654 566666666666665543 3344555
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcC-----CCcHHHHHHHHhHhhccCCchhhhHHHH
Q 048751 786 VMACFAT----NGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKG-----GFPIEAVKQLQSSYQEVKPYASEAIITS 856 (1004)
Q Consensus 786 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 856 (1004)
+...|.. .+++++|+.+|++..+.| +...+..+...+... ++.++|+.+++++.+...+ .....++.
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~ 336 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA-TAQANLGA 336 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Confidence 5555555 566666666666665432 334444555555554 5666666666666654322 12233344
Q ss_pred HHHH---HhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 857 VYSV---VGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKS----SGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYG 929 (1004)
Q Consensus 857 l~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~ 929 (1004)
++.. .++.++|++.+++..+.+ ++.+++.|+..|.. .++.++|+..|++..+.| ++..+..|..+|.
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYY 410 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 4443 237778888888888774 67888999999988 789999999999998854 5677888888888
Q ss_pred h----cCChhHHHHHHHHHHcCCCC-C-cHHHHHHHHHHHH
Q 048751 930 K----AGLVEGVKRIHSQLKYGKME-P-NENLFKAVIDAYR 964 (1004)
Q Consensus 930 ~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~ 964 (1004)
+ .++.++|..++++....+-. | ++.....+..++.
T Consensus 411 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 411 YGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 7 78999999999888654322 2 2334444444433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-15 Score=173.01 Aligned_cols=368 Identities=13% Similarity=0.084 Sum_probs=207.8
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 048751 345 AANVFAEMLKSGVAVDTITFNTMIYTCGS----HGNLSEAEALFCMMEESRISPDTKTYNILLSLYAD----VGNINAAL 416 (1004)
Q Consensus 345 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 416 (1004)
++..+....+.| +...+..+...+.. .+++++|...|++..+.| +...+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 355555555543 56666666666666 788888888888887764 56677778888877 78888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHh----cCCHHHHHHH
Q 048751 417 RYYWKIREVGLFPDSVTQRAILHILCQ----RNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYIN----EGLLHQAKII 488 (1004)
Q Consensus 417 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 488 (1004)
..|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888887754 55666666666666 667777777777776654 33444444444444 4455555555
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 048751 489 FKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTW 568 (1004)
Q Consensus 489 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 568 (1004)
|++.... .++.++..++.+|... ....+++++|+.+|++..+.|
T Consensus 174 ~~~a~~~--~~~~a~~~Lg~~y~~g--------------------------------~g~~~~~~~A~~~~~~a~~~~-- 217 (490)
T 2xm6_A 174 YSKAAEQ--GNVWSCNQLGYMYSRG--------------------------------LGVERNDAISAQWYRKSATSG-- 217 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHT--------------------------------SSSCCCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHC--CCHHHHHHHHHHHhcC--------------------------------CCCCcCHHHHHHHHHHHHHCC--
Confidence 5554432 2344444444444440 000444555555555444432
Q ss_pred CCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCC
Q 048751 569 PDECTYNSLVQMFAG----GDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYAR----LGQLSNAVDLFHEMRRAGVEPN 640 (1004)
Q Consensus 569 p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~ 640 (1004)
+...+..+...+.. .+++++|..+|+...+.| +...+..+...|.. .++.++|+..|++..+.| +
T Consensus 218 -~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~ 290 (490)
T 2xm6_A 218 -DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---N 290 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---C
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---C
Confidence 33344444444443 445555555555554432 23344444444444 555555555555555432 3
Q ss_pred HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHH
Q 048751 641 EVVYGSLINGFAAT-----GKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIG---CLEGAKQVYEKMKEMEGGPDTV 712 (1004)
Q Consensus 641 ~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~ 712 (1004)
...+..+...|... +++++|+..|++..+.| +...+..+...|...| +.++|.+.+++..+.+ +..
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~ 364 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKA 364 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHH
Confidence 44444555555554 55666666666555543 3344445555554434 4555666666655542 445
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 048751 713 ASNTMISLYAE----LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT----MGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 713 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 775 (1004)
.+..+...|.. .+++++|...|++..+.+ ++.++..|..+|.. .+++++|...|++..+.+
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 55555555555 556666666666665543 45555566666655 566666666666666554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-17 Score=177.52 Aligned_cols=292 Identities=12% Similarity=0.010 Sum_probs=166.5
Q ss_pred CCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHH
Q 048751 465 DEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIK 544 (1004)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 544 (1004)
+...+...+..+...|++++|..++++++...+.+..++..++..+...|++++|...+.++.+. .+.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHH
Confidence 44445555555555555555555555555554444444444444444445555554444444432 2223333444444
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 048751 545 AYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSN 624 (1004)
Q Consensus 545 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 624 (1004)
.+...|+ ++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~----------------------------------~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 99 YYLMVGH----------------------------------KNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHSCS----------------------------------CHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhhh----------------------------------hHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHH
Confidence 4444440 4444444444444332 2234445555556666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048751 625 AVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKE 704 (1004)
Q Consensus 625 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 704 (1004)
|...|+++.+.. +.+...+..+...|...|++++|.+.++.+.+... .+..++..+...+...|++++|...++++.+
T Consensus 144 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 144 AMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 666666655542 22344455566666666666666666666655432 3455666666666666666666666666554
Q ss_pred CC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 705 ME--------GGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 705 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 776 (1004)
.. ......++..++.++.+.|++++|...++++.+..|.+..++..++.+|...|++++|+..++++.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 31 1223456777777777777777777777777777777777777777777778888888877777776431
Q ss_pred CCCHHHHHHHHHHH-HHcCCH
Q 048751 777 LRDVISYNQVMACF-ATNGQL 796 (1004)
Q Consensus 777 ~p~~~~~~~l~~~~-~~~g~~ 796 (1004)
.+...+..+..++ ...|+.
T Consensus 302 -~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 -DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp -CCHHHHHHHHHHHHTTTTC-
T ss_pred -CchHHHHHHHHHHHHHhCch
Confidence 2456666666666 345554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=9.8e-16 Score=178.23 Aligned_cols=213 Identities=8% Similarity=0.034 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048751 729 EAESMFNDIREKGQVDAVSFAAMMYLYKT-------MGMLD-------EAIDAAEEMKLSGLLRDVISYNQVMACFATNG 794 (1004)
Q Consensus 729 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 794 (1004)
.|..+|+++....|.++..|..++..+.. .|+++ +|..++++..+.-.+.+...|..++..+.+.|
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 55566666666666666666666666554 46654 66666666654211123556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHH-HHH-HHHHhhhHhhhhH
Q 048751 795 QLRQCGELLHEMLTQKLLPDN--GTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAII-TSV-YSVVGLNALALGT 870 (1004)
Q Consensus 795 ~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~-~~l-~~~~~~~~~A~~~ 870 (1004)
++++|..+|+++++. .|+. ..+...+..+.+.|+.++|.+.++++++..+........ +.+ +...|+.++|.+.
T Consensus 336 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp CHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 666666666666553 3332 245555555555666666666666666543321111000 000 1123444445555
Q ss_pred HHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 871 CETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQG-LEPD--IVTCINLVGCYGKAGLVEGVKRIHSQL 944 (1004)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~pd--~~t~~~l~~~~~~~g~~~~A~~~~~~~ 944 (1004)
|+++++.. |.++..|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+..+.+++
T Consensus 414 ~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 414 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555443 2345555555555555555555555555555531 1221 224444444444455555555555444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-16 Score=179.35 Aligned_cols=336 Identities=11% Similarity=0.008 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHcCCCCCHH
Q 048751 572 CTYNSLVQMFAGGDLMGQAVDLLAEMQGA-----G--FKPQCLTFSSVIAAYARL--GQLSNAVDLFHEMRRAGVEPNEV 642 (1004)
Q Consensus 572 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g--~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~ 642 (1004)
.+|+.+...|...|++++|...+++..+. + ......++..+..++... +++++|+..|++..+.. +-+..
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~ 173 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHH
Confidence 44555555555555555555555544321 0 011233444444444443 34666666666666542 22344
Q ss_pred HHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048751 643 VYGSLING---FAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK----IGCLEGAKQVYEKMKEMEGGPDTVASN 715 (1004)
Q Consensus 643 ~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 715 (1004)
.+..+..+ +...++.++|++.+++..+... .+..++..+...+.. .|++++|.+.+++.....+. +..++.
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~ 251 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHH
Confidence 44444333 2334555666666666665432 344444444444333 34556677777666654432 555666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCC
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM-------------------GMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~ 776 (1004)
.+...|...|++++|...++++.+..|.+..++..++.+|... +.+++|+..+++..+...
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Confidence 6677777777777777777777777777776666666655432 235566677777666432
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHHcCCCcHHHHHHHHhHhhccCCchhhhH
Q 048751 777 LRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG--TFKVLFT-ILKKGGFPIEAVKQLQSSYQEVKPYASEAI 853 (1004)
Q Consensus 777 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 853 (1004)
.+..++..+...+...|++++|...|++.++....+... .+..+.. .....|+.++|+..+++++...+....
T Consensus 332 -~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~--- 407 (472)
T 4g1t_A 332 -NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE--- 407 (472)
T ss_dssp -TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH---
T ss_pred -chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH---
Confidence 234566677777777777777777777776653322211 1122221 234567777777777777766554321
Q ss_pred HHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHH
Q 048751 854 ITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQG-LEPDIVTC 921 (1004)
Q Consensus 854 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~ 921 (1004)
..+....+.+.+++.++.. |.++.+|+.|+.+|...|++++|++.|++.++.| ..|+..+|
T Consensus 408 ------~~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 408 ------KEKMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp ------HHHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred ------HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 2223334455566666665 4577888888888888899999999998888753 33454443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-15 Score=174.57 Aligned_cols=428 Identities=9% Similarity=0.047 Sum_probs=247.8
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048751 349 FAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLF 428 (1004)
Q Consensus 349 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 428 (1004)
|++.++.. +-+...|..++.. .+.|++++|..+|+++.+.. +-+...|..++..+.+.|++++|..+|+++... .
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 45555543 2367788888874 77899999999999999863 336678999999999999999999999999885 4
Q ss_pred CCHHHHHHHHHHH-HHcCCHHHHHH----HHHHHHh-CCCCCCC-CcHHHHHHHHHh---------cCCHHHHHHHHHHh
Q 048751 429 PDSVTQRAILHIL-CQRNMVQEAEA----VIIEMEK-CGLHIDE-HSVPGVMKMYIN---------EGLLHQAKIIFKKC 492 (1004)
Q Consensus 429 p~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~~~~-~~~~~l~~~~~~---------~g~~~~A~~~~~~~ 492 (1004)
|+...|...+... ...|+.++|.+ +|+.... .|..|+. ..+...+..... .|+++.|..+|+++
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 7877887777533 34577766655 5665543 3444332 333444443332 45666666666666
Q ss_pred hhcCCCC--HHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH------H
Q 048751 493 QLDGGLS--SKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMK------N 564 (1004)
Q Consensus 493 ~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~ 564 (1004)
+.. |.. ...+..........|. ..+. .++. .+.++++.|..++.++. +
T Consensus 157 l~~-P~~~~~~~~~~~~~~e~~~~~-~~~~--------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 157 CVN-PMINIEQLWRDYNKYEEGINI-HLAK--------------------KMIE--DRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp TTS-CCTTHHHHHHHHHHHHHHHCH-HHHH--------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred Hhc-hhhhHHHHHHHHHHHHHhhch-hHHH--------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhc
Confidence 552 221 1122211111111110 0000 0110 12234555655555421 1
Q ss_pred CC---CCCC--------HHHHHHHHHHHHc----CCCh----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------
Q 048751 565 LG---TWPD--------ECTYNSLVQMFAG----GDLM----GQAVDLLAEMQGAGFKPQCLTFSSVIAAYAR------- 618 (1004)
Q Consensus 565 ~g---~~p~--------~~t~~~ll~~~~~----~~~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~------- 618 (1004)
.. +.|+ ...|...+..... .++. ..+..+|++++.. .+.+...|..++..+.+
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhh
Confidence 11 2232 1233333322221 1222 3555666666653 24456666666666654
Q ss_pred cCCHh-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcC
Q 048751 619 LGQLS-------NAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQ-IVLTSLIKAYSKIG 690 (1004)
Q Consensus 619 ~g~~~-------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g 690 (1004)
.|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+.+.+... .+. ..|..++..+.+.|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhc
Confidence 56665 6777777766421233466677777777777777777777777776421 122 46666666666677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 691 CLEGAKQVYEKMKEMEGGPDTVASNTMISL-YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAE 769 (1004)
Q Consensus 691 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 769 (1004)
++++|..+|++..+.... +...+...+.. +...|++++|..+|++..+..|.++..|..++..+.+.|+.++|..+|+
T Consensus 371 ~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 777777777777664322 22222222222 2346777777777777777667677777777777777777777777777
Q ss_pred HHHHCCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 770 EMKLSGL-LRD--VISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 770 ~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+....+. .|+ ...|...+......|+.+.+..++.++.+
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7776532 122 33566666666666777777776666654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-17 Score=179.07 Aligned_cols=309 Identities=10% Similarity=-0.027 Sum_probs=147.3
Q ss_pred HhcCCHHHHHH-HHhhhhhhcCCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 048751 511 AEKGLWAEAET-VFYGKRDLVGQKK--SVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLM 587 (1004)
Q Consensus 511 ~~~g~~~~A~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 587 (1004)
...|++++|.. .|.+........| +...+..+...+.+.|++++|+..|+++.+... .+..++..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCH
Confidence 34456666665 5555443211111 233455566666666666666666666666543 2455556666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 588 GQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMM 667 (1004)
Q Consensus 588 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 667 (1004)
++|...++.+.+.. +.+..++..+...|...|++++|...++++.... +.+...+..+... ..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------- 177 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------- 177 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh--------
Confidence 66666666665543 3345556666666666666666666666665532 1111111100000 00
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 048751 668 RECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGP-DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAV 746 (1004)
Q Consensus 668 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 746 (1004)
...+ ...+..+. .+...|++++|...++++.+..+.. +..++..++.+|.+.|++++|...|+++.+..|.+..
T Consensus 178 ---~~~~-~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 252 (368)
T 1fch_A 178 ---GAGL-GPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 252 (368)
T ss_dssp ------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ---hhcc-cHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 0000 00000111 1224555555555555555433221 3455555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------CChh
Q 048751 747 SFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLL----------PDNG 816 (1004)
Q Consensus 747 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------p~~~ 816 (1004)
+|..++.++...|++++|+..++++.+... .+..++..+..++...|++++|...++++++.... ....
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 555555555555555555555555555321 23445555555555555555555555555432100 0134
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHhHhh
Q 048751 817 TFKVLFTILKKGGFPIEAVKQLQSSYQ 843 (1004)
Q Consensus 817 ~~~~l~~~~~~~g~~~~A~~~l~~~~~ 843 (1004)
++..+..++...|+.++|...++..++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 455555555556666655555554443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=176.95 Aligned_cols=305 Identities=11% Similarity=-0.030 Sum_probs=132.9
Q ss_pred HHHcCCHHHHHH-HHHHHHhCCC---CCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCH
Q 048751 441 LCQRNMVQEAEA-VIIEMEKCGL---HIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLW 516 (1004)
Q Consensus 441 ~~~~g~~~~A~~-~~~~m~~~g~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 516 (1004)
+...|++++|.+ .+++...... ..+...+..+...+...|++++|...+++++...+.+..++..++.+|...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 334455555555 4443332211 112344555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 048751 517 AEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAE 596 (1004)
Q Consensus 517 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 596 (1004)
++|...|.++.+. .+.+..++..+...+...|++++|+..++++...... +...+..+.. .. .
T Consensus 115 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~-------~~-------~ 177 (368)
T 1fch_A 115 LLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEE-------GA-------G 177 (368)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH-------Hh-------h
Confidence 5555555555443 3334444555555555555555555555555443211 0000000000 00 0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048751 597 MQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEP-NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWAN 675 (1004)
Q Consensus 597 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 675 (1004)
.. .+ ...+..+.. +...|++++|...|+++.+..... +..++..+...|...|++++|+..++++.+.
T Consensus 178 ~~----~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----- 246 (368)
T 1fch_A 178 GA----GL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----- 246 (368)
T ss_dssp -------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hh----cc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 00 00 000011111 124455555555555554432100 2444444444444445555555444444443
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
.. .+..++..++.++...|++++|+..|+++.+..|.+..++..++.+|
T Consensus 247 ------------------------------~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 247 ------------------------------RP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp ------------------------------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ------------------------------Cc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 22 13444555555555555555555555555555555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLR----------DVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
...|++++|+..++++.+..... ...+|..+..++...|++++|..++.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 55555555555555554422100 13455555556666666655555554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=182.45 Aligned_cols=262 Identities=10% Similarity=0.025 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFA 791 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 791 (1004)
..+..++..+.+.|++++|+.+|+++.+..|.+..+|..++.+|...|++++|+..|+++.+... .+..+|..++.+|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34666677777777777777777777777777777777777777777777777777777776542 33666777777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-----------hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCC--chh-hhHHHHH
Q 048751 792 TNGQLRQCGELLHEMLTQKLLPD-----------NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKP--YAS-EAIITSV 857 (1004)
Q Consensus 792 ~~g~~~~A~~~~~~~~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~--~~~-~~~~~~l 857 (1004)
..|++++|...++++++. .|+ ...+..+...+...|++++|+..++++++..+. .+. ...++.+
T Consensus 145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 777777777777777543 121 112233466677788888888888888877665 332 3455667
Q ss_pred HHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhH
Q 048751 858 YSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEG 936 (1004)
Q Consensus 858 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~ 936 (1004)
+...|++++|++.++++++.. |.+..+|+.++.+|...|++++|++.|+++++ ..| +..++..+..++.+.|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHH
Confidence 788888999999999988886 45788999999999999999999999999998 467 48899999999999999999
Q ss_pred HHHHHHHHHcCC---CCC--------cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 937 VKRIHSQLKYGK---MEP--------NENLFKAVIDAYRNANREDLADLACQEM 979 (1004)
Q Consensus 937 A~~~~~~~~~~~---~~p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 979 (1004)
|...++++.... ..+ +..+|..+..++...|+.+.|.++.++-
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999998875321 111 2578999999999999999999888763
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-17 Score=176.22 Aligned_cols=385 Identities=12% Similarity=0.115 Sum_probs=135.2
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048751 137 KEQTVVLKEQKSWERVIRVFEFFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGK 216 (1004)
Q Consensus 137 ~~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 216 (1004)
+.+.++|...+++++|.++++... +..+|..++.++.+.|++++|...|.+ .+|..+|..++.++..
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHh
Confidence 445566666777777777776552 123677777777777777777777754 2455677777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhH
Q 048751 217 AGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLST 296 (1004)
Q Consensus 217 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1004)
.|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++.
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------------------------- 119 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING-------------------------------- 119 (449)
T ss_dssp -------------------------------------CHHHHTTTTTC--------------------------------
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--------------------------------
Confidence 77777777766655553 44566667777777777777666555421
Q ss_pred HHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCC
Q 048751 297 ELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGN 376 (1004)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 376 (1004)
| +..+|+.++..|...|++++|...|..+ ..|..++.++.+.|+
T Consensus 120 --------------------------p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 120 --------------------------P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 163 (449)
T ss_dssp --------------------------C-----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTC
T ss_pred --------------------------C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhcc
Confidence 1 2346777777777777777777777655 246666677777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 377 LSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIE 456 (1004)
Q Consensus 377 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 456 (1004)
+++|.+.++++ .++.+|..++.+|...|+++.|..+...+. ....-...++..|.+.|.+++|..+++.
T Consensus 164 yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 164 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777766666 156666777777777777766644443321 1222233455555555555555555555
Q ss_pred HHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHh--cCCHHHHHHHHhhhhhhcCCC-
Q 048751 457 MEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAE--KGLWAEAETVFYGKRDLVGQK- 533 (1004)
Q Consensus 457 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~- 533 (1004)
.. ...+.....+..++.+|++ .+++.+..+.|...... ++
T Consensus 233 aL-----------------------------------~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini--~k~ 275 (449)
T 1b89_A 233 AL-----------------------------------GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI--PKV 275 (449)
T ss_dssp HT-----------------------------------TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH--HHH
T ss_pred Hh-----------------------------------CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC--cHH
Confidence 44 3333344444444444443 23444444444433221 11
Q ss_pred ----CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 048751 534 ----KSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLG-----------TWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQ 598 (1004)
Q Consensus 534 ----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 598 (1004)
.+...|..+.-.|.+.++++.|....-+-.... -..+...|-..+..|. +....++.-+-..+
T Consensus 276 ~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 276 LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 123345566666666666665554321110000 0124555555565555 22222222222222
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 599 GAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQ 662 (1004)
Q Consensus 599 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 662 (1004)
... .| .+..+..+.+.|++.-+...+..+... .+...=.++-..|....+++.-..
T Consensus 354 ~~~--ld---~~r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~ 409 (449)
T 1b89_A 354 SPR--LD---HTRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRT 409 (449)
T ss_dssp GGG--CC---HHHHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred Hhc--cC---cHHHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHH
Confidence 111 11 245566667777777777777666643 234444455556677777654433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=177.11 Aligned_cols=379 Identities=13% Similarity=0.143 Sum_probs=186.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHH
Q 048751 181 RAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVRVLKEVGEFDSADR 260 (1004)
Q Consensus 181 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 260 (1004)
+.|++++|..+++++. +..+|+.|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|.+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5577889999888872 2358889999999999999999999653 577788999999999999999988
Q ss_pred HHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchhHHHHHHHHHHhcC
Q 048751 261 FYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTSTYNTLIDLYGKAG 340 (1004)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~g 340 (1004)
+++...+ . .+++.+.+.|+.+|.+.|
T Consensus 83 yl~~ark-~-----------------------------------------------------~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 83 YLQMARK-K-----------------------------------------------------ARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-h-----------------------------------------------------CccchhHHHHHHHHHHhC
Confidence 7654211 0 112456788889999999
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 341 RLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYW 420 (1004)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 420 (1004)
+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.++
T Consensus 109 ~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 109 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 9999888874 367778999999999999999999999876 368889999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCH
Q 048751 421 KIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSS 500 (1004)
Q Consensus 421 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 500 (1004)
++ .++.+|..++.+|+..|+++.|..+...+. ..+
T Consensus 173 KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---------------------------------------~~a 207 (449)
T 1b89_A 173 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---------------------------------------VHA 207 (449)
T ss_dssp HH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---------------------------------------TCH
T ss_pred Hc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---------------------------------------hCH
Confidence 87 378889999999999888888844332211 122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcC--CChhHHHHHHHHHHHCCCCC------CHH
Q 048751 501 KTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKS--KLYDKAFSLFKVMKNLGTWP------DEC 572 (1004)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p------~~~ 572 (1004)
.-...++..|.+.|.+++|..+++..... .+.....|+-|.-.|++- ++..+.+++|..- .+++| +..
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~ 283 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHH
Confidence 22345788899999999999999998764 466677788887777765 4555666655422 12222 456
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH
Q 048751 573 TYNSLVQMFAGGDLMGQAVDLLAEMQGA-----------GFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE 641 (1004)
Q Consensus 573 t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 641 (1004)
.|..+.-.|.+.++++.|....-.-... .-..+...|...+..|.. ....++.-+.......+ |
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~l--d- 358 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRL--D- 358 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGC--C-
T ss_pred HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcc--C-
Confidence 7889999999999999887643221110 014568888888888883 22333433333332222 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYE 700 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 700 (1004)
.+..+..+.+.|.+..+..++..+... -+..+-.++-+.|....+++.-..-.+
T Consensus 359 --~~r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 359 --HTRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp --HHHHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --cHHHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 244566778888888888888877765 355666677777888888877665554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=175.48 Aligned_cols=229 Identities=10% Similarity=-0.025 Sum_probs=138.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-----------H
Q 048751 573 TYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN-----------E 641 (1004)
Q Consensus 573 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~ 641 (1004)
++..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|+..|+++.+.. |+ .
T Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~ 177 (365)
T 4eqf_A 101 AWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSP 177 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccch
Confidence 33333333334444444444444333321 2233444444444444444444444444444321 11 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLW-ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
..+..+...+...|++++|+++++++.+.... .+..++..+...+...|++++|...++++.+..+. +..+|..++.+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 256 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGAT 256 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 22334466666777777777777777665432 15667777777777777777777777777765433 56777888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-----------RDVISYNQVMAC 789 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------p~~~~~~~l~~~ 789 (1004)
|.+.|++++|+..|+++.+..|.+..++..++.+|...|++++|+..|+++.+.... .+..+|..+..+
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888887763311 125678888888
Q ss_pred HHHcCCHHHHHHHHHH
Q 048751 790 FATNGQLRQCGELLHE 805 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~ 805 (1004)
+...|+.+.+..+..+
T Consensus 337 ~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 337 LSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHTCHHHHHHHHTT
T ss_pred HHHcCcHHHHHHHHHh
Confidence 8888888887776654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-15 Score=170.19 Aligned_cols=384 Identities=13% Similarity=0.020 Sum_probs=201.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Q 048751 360 DTITFNTMIYTCGSHGNLSEAEALFCMMEES-----R--ISP-DTKTYNILLSLYADVGNINAALRYYWKIREV-----G 426 (1004)
Q Consensus 360 ~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g 426 (1004)
....||.|...+...|++++|++.|++.++. + ..| ...+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4557888888888889999999988877542 1 122 3467888888888888888888888877642 1
Q ss_pred -CCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCCCcHHHHHHH---HHhcCCHHHHHHHHHHhhhcCCCC
Q 048751 427 -LFP-DSVTQRAILHILCQR--NMVQEAEAVIIEMEKCGLHIDEHSVPGVMKM---YINEGLLHQAKIIFKKCQLDGGLS 499 (1004)
Q Consensus 427 -~~p-~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~ 499 (1004)
..+ ...++..+..++.+. +++++|++.|++..+.... ++..+..+..+ +...++.++|.+.+++++...+.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 111 234455444444443 3466777777766654321 22233333333 233455566666666666666666
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048751 500 SKTLAAIIDVYAE----KGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYN 575 (1004)
Q Consensus 500 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 575 (1004)
..++..++..+.. .|++++|...+++.... .+.+...+..+...|...|++++|+..+++..+..+. +..++.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 6665555544443 34455566666655543 4444555666666666666666666666666554322 334444
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048751 576 SLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG 655 (1004)
Q Consensus 576 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 655 (1004)
.+...|...+. ...... ...........+..+.|...+++..... +.+..++..+...|...|
T Consensus 286 ~lg~~y~~~~~---------~~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVF---------QVMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHH---------HHHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH---------HhhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 44433321100 000000 0000001111223556666666666543 333455666777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 656 KVEEALQYFRMMRECGLWANQI--VLTSLIK-AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAES 732 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 732 (1004)
++++|++.|++..+....+... .+..+.. .....|++++|+..+++..+.... .... .+....+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~---------~~~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREK---------EKMKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHH---------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHH---------HHHHHHHHH
Confidence 7777777777776654322211 1222222 223566777777777776664332 2111 112234455
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 733 MFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
++++..+..|.++.+|..++.+|...|++++|++.|++.++.+
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5666666667777777777777777777777777777776643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-15 Score=160.07 Aligned_cols=273 Identities=14% Similarity=0.039 Sum_probs=179.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 649 NGFAATGKVEEALQYFRMMRECGLWANQ--IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM 726 (1004)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (1004)
+-....|++..|+..++...... |+. .....+..+|...|+++.|+..++. ...|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 33445677777777766554322 322 2445556677777777777765533 123455566666677777777
Q ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 727 VTEAESMFNDIREKG--QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
.++|++.++++.... |.++..+..++.++...|++++|++.+++ ..+...+..++..+.+.|++++|...++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777766553 66666777777777777777777777765 2456666677777777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCch
Q 048751 805 EMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSF 884 (1004)
Q Consensus 805 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~ 884 (1004)
++.+. .|+.. ...+.. .|..++...|++++|+..++++++.. |.++.
T Consensus 155 ~~~~~--~p~~~-~~~l~~-----------------------------a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~ 201 (291)
T 3mkr_A 155 KMQDQ--DEDAT-LTQLAT-----------------------------AWVSLAAGGEKLQDAYYIFQEMADKC-SPTLL 201 (291)
T ss_dssp HHHHH--CTTCH-HHHHHH-----------------------------HHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHH
T ss_pred HHHhh--CcCcH-HHHHHH-----------------------------HHHHHHhCchHHHHHHHHHHHHHHhC-CCcHH
Confidence 77554 23321 111111 12223334477788888888888875 55888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhH-HHHHHHHHHcCCCCCcHHHHHHHHHH
Q 048751 885 IYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEG-VKRIHSQLKYGKMEPNENLFKAVIDA 962 (1004)
Q Consensus 885 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~ 962 (1004)
+|+.++.++.+.|++++|.+.|+++++ ..| +..++..++.++...|+.++ +.++++++.. +.|+... +.+.
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~ 274 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEY 274 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHH
Confidence 999999999999999999999999998 567 68899999999999999965 6788887763 4676332 2233
Q ss_pred HHhcCChhHHH
Q 048751 963 YRNANREDLAD 973 (1004)
Q Consensus 963 ~~~~g~~~~A~ 973 (1004)
..+.+.++++.
T Consensus 275 ~~~~~~fd~~~ 285 (291)
T 3mkr_A 275 RAKENDFDRLV 285 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-17 Score=190.04 Aligned_cols=150 Identities=11% Similarity=0.146 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLK---SGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNIL 402 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 402 (1004)
..+||+||++||+.|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||++|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 57999999999999999999999988864 489999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------CCcHHHHHHH
Q 048751 403 LSLYADVGN-INAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHID------EHSVPGVMKM 475 (1004)
Q Consensus 403 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~l~~~ 475 (1004)
|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.+..+. ..++.++++ ..+..|+ ..+...+.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999999766554 333344444 3344443 3333444455
Q ss_pred HHhcC
Q 048751 476 YINEG 480 (1004)
Q Consensus 476 ~~~~g 480 (1004)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 55433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-15 Score=160.26 Aligned_cols=261 Identities=13% Similarity=-0.018 Sum_probs=126.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048751 539 YNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYAR 618 (1004)
Q Consensus 539 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 618 (1004)
+..+...+...|++++|..+|+++.+.... +..++..+...+...|++++|...++.+.+.. +.+..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 334444455555555555555555443321 34444444555555555555555555544432 2344455555555555
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 619 LGQLSNAVDLFHEMRRAGVEPNEVVYGSL--------------IN-GFAATGKVEEALQYFRMMRECGLWANQIVLTSLI 683 (1004)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 683 (1004)
.|++++|...++++.+.. +.+...+..+ .. .+...|++++|.++++++.+... .+..++..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 555555555555555432 1111111111 11 14444555555555555554432 2444555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
..+...|++++|...++++.+... .+..++..++..+...|++++|...|+++.+..|.+..++..++.+|...|++++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 555555555555555555544332 2344555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 764 AIDAAEEMKLSGLLR-----------DVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|+..++++.+..... +..+|..+..++...|++++|..+++
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555555554432111 23444555555555555555555444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-15 Score=160.92 Aligned_cols=280 Identities=10% Similarity=-0.025 Sum_probs=212.0
Q ss_pred CCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHH
Q 048751 465 DEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIK 544 (1004)
Q Consensus 465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 544 (1004)
+...+...+..+...|++++|..+++++....+.+..++..++.++...|++++|...|.++.+. .+.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHH
Confidence 45566778888888888888888888888888888888888888888888888888888887765 4556777777888
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCH
Q 048751 545 AYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIA--AYARLGQL 622 (1004)
Q Consensus 545 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~ 622 (1004)
.+...|++++|...++++.+.... +...+..+... .|+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 888888888888888887765322 11111111000 011111112212 36677888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 623 SNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKM 702 (1004)
Q Consensus 623 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 702 (1004)
++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+... .+..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998888764 44678888888999999999999999998887643 46778888999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 703 KEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV------------DAVSFAAMMYLYKTMGMLDEAIDAAEE 770 (1004)
Q Consensus 703 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 770 (1004)
.+... .+..++..+..++.+.|++++|.+.|+++.+..|. +..+|..++.++...|++++|..++++
T Consensus 233 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 87654 36778889999999999999999999999888877 688999999999999999999988875
Q ss_pred HH
Q 048751 771 MK 772 (1004)
Q Consensus 771 ~~ 772 (1004)
.+
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 54
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-14 Score=154.02 Aligned_cols=271 Identities=11% Similarity=0.079 Sum_probs=177.3
Q ss_pred HHhcCCHHHHHHHHhhhhhhcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 048751 510 YAEKGLWAEAETVFYGKRDLVGQKKS--VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLM 587 (1004)
Q Consensus 510 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 587 (1004)
....|++..|+..++.... ..|+ ......+..+|...|+++.|+..++. .-.|+..++..+...+...++.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 3445555555555544322 2222 22334456667777777777665543 1234556666677777777777
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 588 GQAVDLLAEMQGAGF-KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRM 666 (1004)
Q Consensus 588 ~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 666 (1004)
++|.+.++++...+. +.+...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777766553 33455566666777788888888877766 45677777788888888888888888888
Q ss_pred HHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 048751 667 MRECGLWANQIVL---TSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV 743 (1004)
Q Consensus 667 m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (1004)
+.+.. |+.... ..++..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|+..|+++.+..|.
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 87754 332211 1122333445788888888888887643 47778888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048751 744 DAVSFAAMMYLYKTMGMLDE-AIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 744 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
++.++..++..+...|+.++ +.++++++.+.. |+... +.....+.+.++++..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHH
Confidence 88888888888888888765 567888887744 55332 1223344444444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-16 Score=179.48 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=112.6
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048751 358 AVDTITFNTMIYTCGSHGNLSEAEALFCMME---ESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQ 434 (1004)
Q Consensus 358 ~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 434 (1004)
.--..|||+||++||+.|++++|.++|++|. ..|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3446799999999999999999999998876 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcC
Q 048751 435 RAILHILCQRNM-VQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEG 480 (1004)
Q Consensus 435 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 480 (1004)
+++|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++....+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 999999999998 5789999999999999999999988876555543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=138.66 Aligned_cols=198 Identities=15% Similarity=0.061 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 675 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
+...+..+...+.+.|++++|...+++..+..+. +...+..+..++.+.|++++|+..|+++.+..|.+..++..++.+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3344445555555555555555555555544332 444555555555555555555555555555555555555555555
Q ss_pred HHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048751 755 YKTM-----------GMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFT 823 (1004)
Q Consensus 755 ~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 823 (1004)
+... |++++|+..+++.++..+ .+...|..+..++...|++++|+..|++.++.. .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 5555 555555555555555331 124455555555555555555555555554443 33333333333
Q ss_pred HHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHH
Q 048751 824 ILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKAL 903 (1004)
Q Consensus 824 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 903 (1004)
++...|+ +++|++.++++++.. |.+..++..++.++...|++++|+
T Consensus 160 ~~~~~g~---------------------------------~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 160 LYLSMGR---------------------------------LDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHHHTC---------------------------------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------
T ss_pred HHHHcCC---------------------------------HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHH
Confidence 3333333 333333333344433 335666777777777777777777
Q ss_pred HHHHHHH
Q 048751 904 NTFMKML 910 (1004)
Q Consensus 904 ~~~~~m~ 910 (1004)
+.|++..
T Consensus 206 ~~~~~~~ 212 (217)
T 2pl2_A 206 RAAALEH 212 (217)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 7777654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-13 Score=139.95 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=110.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCCC----HHHHHHH
Q 048751 539 YNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAG--FKPQ----CLTFSSV 612 (1004)
Q Consensus 539 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~----~~~~~~l 612 (1004)
|..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|...+..+.+.. ..++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4444455555555555555555554443 344445555555555555555555555444321 0011 3445555
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCL 692 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 692 (1004)
...|...|++++|...|+++... .|+. ..+...|++++|...++.+..... .+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCH
Confidence 55566666666666666655553 2332 223334455555555555554321 2233444455555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
++|...++++.+.... +..++..++.++...|++++|...|+++.+..|.+..+|..++.++...|++++|+..++++.
T Consensus 156 ~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555555443322 344455555555555555555555555555555555555555555555555555555555554
Q ss_pred H
Q 048751 773 L 773 (1004)
Q Consensus 773 ~ 773 (1004)
+
T Consensus 235 ~ 235 (258)
T 3uq3_A 235 T 235 (258)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-13 Score=138.39 Aligned_cols=223 Identities=11% Similarity=0.083 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--CCCC----HHHHH
Q 048751 572 CTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAG--VEPN----EVVYG 645 (1004)
Q Consensus 572 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~ 645 (1004)
..+..+...+...|++++|...++.+.+.. .+..++..+..+|...|++++|+..+++..+.. ..++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555666666666666666666666654 555666666666666666666666666655431 0111 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 646 SLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG 725 (1004)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (1004)
.+...+...|++++|++.|+.+.+.. |+. ..+...|++++|...++.+...... +...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 66666666666666666666666532 332 2344445566666666665553321 3345555666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048751 726 MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHE 805 (1004)
Q Consensus 726 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 805 (1004)
++++|...|+++.+..|.+..+|..++.+|...|++++|+..++++.+... .+..+|..+..++...|++++|...+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666655431 2355555666666666666666666665
Q ss_pred HH
Q 048751 806 ML 807 (1004)
Q Consensus 806 ~~ 807 (1004)
.+
T Consensus 233 a~ 234 (258)
T 3uq3_A 233 AR 234 (258)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-14 Score=157.06 Aligned_cols=203 Identities=12% Similarity=0.075 Sum_probs=102.8
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH--
Q 048751 621 QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKV---EEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGA-- 695 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-- 695 (1004)
++++|+..|++..+.|. ++ .+..|...|...+.. .++.+.+......|. ......|...|...+.++++
T Consensus 89 ~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHH
Confidence 44555555555554431 11 333444444433322 223333443333332 22344455555555533333
Q ss_pred --HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc----CCHHHHHH
Q 048751 696 --KQVYEKMKEMEGGPDTVASNTMISLYAELG---MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM----GMLDEAID 766 (1004)
Q Consensus 696 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~ 766 (1004)
..+++.... .++..+..|..+|.+.| +.++|+..|++..+.++++...+..++.+|... +++++|+.
T Consensus 163 ~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 163 DVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp HHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 233332222 12225556666666666 667777777777777766666666666666544 56777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCC-----CcHHHHHHH
Q 048751 767 AAEEMKLSGLLRDVISYNQVMAC-F--ATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGG-----FPIEAVKQL 838 (1004)
Q Consensus 767 ~~~~~~~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~l 838 (1004)
+|++.. . -+...+..|... + ...+++++|+.+|++..+.| +......+...|. .| +.++|+.++
T Consensus 239 ~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 777665 2 334455555554 2 34667777777777766554 3344444444443 22 444444444
Q ss_pred HhH
Q 048751 839 QSS 841 (1004)
Q Consensus 839 ~~~ 841 (1004)
+++
T Consensus 311 ~~A 313 (452)
T 3e4b_A 311 EKA 313 (452)
T ss_dssp HTT
T ss_pred HHH
Confidence 443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-13 Score=135.90 Aligned_cols=208 Identities=15% Similarity=0.041 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 604 PQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLI 683 (1004)
Q Consensus 604 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 683 (1004)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..+++..+..+ .+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 344444555555555555555555555554432 22344555555555555555555555555554432 2334444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
..+...+. . . .. .+...|++++|+..|++..+..|.+..+|..++.+|...|++++
T Consensus 81 ~~~~~~~~------------~-~--~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 81 EAYVALYR------------Q-A--ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHHH------------T-C--SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhh------------h-h--hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH
Confidence 44444400 0 0 00 00001666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHh
Q 048751 764 AIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQS 840 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~ 840 (1004)
|+..|+++++.. .+...+..+..++...|++++|+..|++.++. -+.+...+..+..++...|+.++|+..+++
T Consensus 137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666554 45555666666666666666666666666543 122333444555555555555555555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=8.4e-13 Score=144.12 Aligned_cols=252 Identities=11% Similarity=0.095 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM-VTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
.|..+...+...|++++|+..++++++..+. +..+|+.+..++...|+ +++|+..|+++.+..|.+..+|..++.++.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3444444445555555555555555544332 44455555555555554 555555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-CCCcHHHH
Q 048751 757 TMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKK-GGFPIEAV 835 (1004)
Q Consensus 757 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~ 835 (1004)
..|++++|+..|+++++... .+...|..+..++...|++++|+..++++++.. +-+...+..+..++.+ .|..++|+
T Consensus 178 ~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 55555555555555555331 234455555555555555555555555554431 1123344444444444 33323332
Q ss_pred HHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcC--ChHHHHHHHHHHHHCC
Q 048751 836 KQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSG--KNDKALNTFMKMLDQG 913 (1004)
Q Consensus 836 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g 913 (1004)
.+.+++.++++++.. |.+..+|+.++.+|...| ++++|++.+.++ +
T Consensus 256 ----------------------------~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-- 303 (382)
T 2h6f_A 256 ----------------------------LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-- 303 (382)
T ss_dssp ----------------------------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--
T ss_pred ----------------------------HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--
Confidence 011245555666654 447788999999999888 689999999887 3
Q ss_pred CCC-CHHHHHHHHHHHHhcC---------ChhHHHHHHHHH-HcCCCCCc-HHHHHHHHHHHHhc
Q 048751 914 LEP-DIVTCINLVGCYGKAG---------LVEGVKRIHSQL-KYGKMEPN-ENLFKAVIDAYRNA 966 (1004)
Q Consensus 914 ~~p-d~~t~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~p~-~~~~~~l~~~~~~~ 966 (1004)
..| +...+..+++++.+.| .+++|.++++++ . .+.|. ...|..++..+...
T Consensus 304 ~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~--~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 304 PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK--EKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH--HhCchhHHHHHHHHHHHHHH
Confidence 456 5778888998888864 248899999888 5 45676 56777777666543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=143.72 Aligned_cols=118 Identities=12% Similarity=-0.016 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 655 GKVEEALQYFRMMRECGLW---ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAE 731 (1004)
Q Consensus 655 g~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 731 (1004)
|++++|+..++.+.+.... .+..++..+...+...|++++|...++++.+..+. +..++..++.+|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555554443211 12233444444444444444444444444443221 3444444444444444444444
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 732 SMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
..|+++.+..|.+..++..++.+|...|++++|+..++++.+
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-13 Score=140.10 Aligned_cols=242 Identities=9% Similarity=-0.006 Sum_probs=118.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHc
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVMACFATN 793 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 793 (1004)
..+..+...|++++|+..|+++.+..|.+..++..++.+|...|++++|+..++++.+....++ ..+|..+...+...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3444455555555555555555555555555555555555555555555555555554221111 22344555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhh-HHHHHHHHHhhhHhhhhHHH
Q 048751 794 GQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEA-IITSVYSVVGLNALALGTCE 872 (1004)
Q Consensus 794 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~-~~~~l~~~~~~~~~A~~~~~ 872 (1004)
|++++|+..+++..+.. +.+...+..+...+...|++++|+..++++++..+...... .++......+++++|++.++
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554321 12233444455555555555555555555544433332211 11212222335555555555
Q ss_pred HHHhhhccCCchhHHHHHHHHHhcCC---hHHHHHHHHHHHHC-CCCCC------HHHHHHHHHHHHhcCChhHHHHHHH
Q 048751 873 TLIKAEAYLDSFIYNVAIYAFKSSGK---NDKALNTFMKMLDQ-GLEPD------IVTCINLVGCYGKAGLVEGVKRIHS 942 (1004)
Q Consensus 873 ~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~-g~~pd------~~t~~~l~~~~~~~g~~~~A~~~~~ 942 (1004)
++++.. |.+..++..++.++...|+ +++|...|+++.+. .-.|+ ..++..+..++.+.|++++|...++
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555554 2345556666666666666 66666666666542 11132 1355556666666666666666666
Q ss_pred HHHcCCCCCc-HHHHHHHHH
Q 048751 943 QLKYGKMEPN-ENLFKAVID 961 (1004)
Q Consensus 943 ~~~~~~~~p~-~~~~~~l~~ 961 (1004)
++.. +.|+ ...+..+..
T Consensus 246 ~al~--~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 246 NILA--LDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHH--HCTTCHHHHHHHC-
T ss_pred HHHh--cCccHHHHHHHhhh
Confidence 6542 2444 334444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-13 Score=151.60 Aligned_cols=341 Identities=12% Similarity=0.066 Sum_probs=175.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCH---HHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcC
Q 048751 438 LHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLL---HQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKG 514 (1004)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 514 (1004)
...+.+.|++++|.++|++..+.| +...+..+...|...|+. ++|..+|++.... ++.+...++.++...|
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCC
Confidence 334445556666666666555543 333444444445555555 5666666655533 4445555555444443
Q ss_pred -----CHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 048751 515 -----LWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLY---DKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDL 586 (1004)
Q Consensus 515 -----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 586 (1004)
+.++|...|.+..+. ..++ .+..|...|...+.. .++.+.+......|. ...+..+...|...+.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~--g~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFAN--GEGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGT 156 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHT--TCSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHHHHHC--CCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCC
Confidence 555666666655542 1222 444455555544432 234444444444332 2334445555555453
Q ss_pred hHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----C
Q 048751 587 MGQ----AVDLLAEMQGAGFKPQCLTFSSVIAAYARLG---QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAAT----G 655 (1004)
Q Consensus 587 ~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g 655 (1004)
+++ +..++..... .+...+..+...|.+.| +.++|+..|++..+.| +++...+..|...|... +
T Consensus 157 ~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 333 3333333322 22226666666777777 7777777777777665 44555555566666544 5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----CH
Q 048751 656 KVEEALQYFRMMRECGLWANQIVLTSLIKA-Y--SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG-----MV 727 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 727 (1004)
++++|+++|+... . -+...+..|... + ...+++++|.+.|++..+.+ +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 7777777777766 3 234445555554 3 34677777777777776654 5556666666665 44 77
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 048751 728 TEAESMFNDIREKGQVDAVSFAAMMYLYKT----MGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT----NGQLRQC 799 (1004)
Q Consensus 728 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 799 (1004)
++|...|++.. +.++.++..|+.+|.. ..++++|+.+|++..+.|. ......|...|.. ..+..+|
T Consensus 304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 77777777766 5566677777766665 3377777777777776553 2334445444443 3466677
Q ss_pred HHHHHHHHHCC
Q 048751 800 GELLHEMLTQK 810 (1004)
Q Consensus 800 ~~~~~~~~~~~ 810 (1004)
..+|+...+.|
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 77776665544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-12 Score=136.71 Aligned_cols=251 Identities=10% Similarity=0.022 Sum_probs=167.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 048751 643 VYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGP--DTVASNTMISL 720 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 720 (1004)
.+......+...|++++|+.+|+.+.+... .+...+..+...+...|++++|...++++.+....+ ....|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344556667777788888888877776543 244467777777788888888888888777733222 23347778888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCG 800 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 800 (1004)
+...|++++|+..|+++.+..|.+..+|..++.+|...|++++|+..+++..+... .+...|..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888877532 34566666663444556888888
Q ss_pred HHHHHHHHCCCCCC-hhhHHHHHHHHHcCCC---cHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHh
Q 048751 801 ELLHEMLTQKLLPD-NGTFKVLFTILKKGGF---PIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIK 876 (1004)
Q Consensus 801 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~ 876 (1004)
..++++++. .|+ ...+..+..++...|+ .++|...++++++.....
T Consensus 163 ~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------------------- 212 (272)
T 3u4t_A 163 SSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG---------------------------- 212 (272)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG----------------------------
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc----------------------------
Confidence 888888654 233 3344444444444444 444444444433321110
Q ss_pred hhccC----CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 048751 877 AEAYL----DSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYG 929 (1004)
Q Consensus 877 ~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~ 929 (1004)
+.+ -..+|..++..|...|++++|++.|+++++ +.| |...+..+.....
T Consensus 213 --~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 213 --GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp --GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHC----
T ss_pred --cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHHhhhhhc
Confidence 110 124688899999999999999999999998 567 4555555544433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.8e-13 Score=139.09 Aligned_cols=245 Identities=11% Similarity=-0.058 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 690 GCLEGAKQVYEKMKEMEGG---PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
|++++|+..++++.+.... .+..++..++..+...|++++|...|+++.+..|.+..+|..++.+|...|++++|+.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 4455555555555543211 1233444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccC
Q 048751 767 AAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVK 846 (1004)
Q Consensus 767 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 846 (1004)
.++++.+... .+..++..+...+...|++++|...++++.+. .|+..........+...|+.++|...+++.+...+
T Consensus 99 ~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 99 AFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 5555555321 22445555555555555555555555555432 23322222222333344555555555555554444
Q ss_pred CchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhcc---CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 847 PYASEAIITSVYSVVGLNALALGTCETLIKAEAY---LDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCIN 923 (1004)
Q Consensus 847 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 923 (1004)
+..........+...+..++|++.++++++..+. .+..+|..++.+|...|++++|...|+++++ ..|+. +..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~--~~~ 251 (275)
T 1xnf_A 176 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN--FVE 251 (275)
T ss_dssp CCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT--CHH
T ss_pred cchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh--HHH
Confidence 4333223333333444444555555555444321 1245677777788888888888888888776 34532 122
Q ss_pred HHHHHHhcCChhHHHHHH
Q 048751 924 LVGCYGKAGLVEGVKRIH 941 (1004)
Q Consensus 924 l~~~~~~~g~~~~A~~~~ 941 (1004)
...++...|++++|.+.+
T Consensus 252 ~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 244566667777766654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=9.5e-12 Score=128.80 Aligned_cols=201 Identities=10% Similarity=-0.048 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKA 685 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 685 (1004)
...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.++++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 3456667777777788888888887777653 34567777777788888888888888887776543 356677777778
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 686 YSKIGCLEGAKQVYEKMKEMEGGP-DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA 764 (1004)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 764 (1004)
+...|++++|.+.++++.+.+..| +...+..++.++...|++++|...|+++.+..|.+..++..++.++...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888877632333 4456777778888888888888888888888777888888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 765 IDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 765 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+..++++.+... .+...+..+...+...|++++|..+++++.+.
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888876442 44667777777888888888888888887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-12 Score=138.96 Aligned_cols=181 Identities=11% Similarity=0.096 Sum_probs=77.3
Q ss_pred HHHHHHHHHHcCCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048751 573 TYNSLVQMFAGGDL-MGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGF 651 (1004)
Q Consensus 573 t~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 651 (1004)
.|+.+...+...|+ +++|+..|+++++.. +-+..+|..+..++.+.|++++|+..|+++.+.+ +-+...|..+..++
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~ 210 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVI 210 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHH
Confidence 33333333333342 444444444443322 2233344444444444444444444444444432 22344444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 652 AATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK-IGCLEGA-----KQVYEKMKEMEGGPDTVASNTMISLYAELG 725 (1004)
Q Consensus 652 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 725 (1004)
...|++++|+..|+++++..+ -+...|+.+..++.. .|..++| +..+++.++..+. +...|+.+..++.+.|
T Consensus 211 ~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 211 QEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTC
T ss_pred HHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccC
Confidence 444444444444444444332 233444444444444 2332333 2444444443322 3344444444444444
Q ss_pred --CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 726 --MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 726 --~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
++++|++.+.++ +..|.+..++..++.+|.+.
T Consensus 289 ~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 289 LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 345555555444 33444455555555555444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-11 Score=125.37 Aligned_cols=225 Identities=10% Similarity=0.026 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAA----TGKVEEALQYFRMMRECGLWANQIVLT 680 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 680 (1004)
+..++..+...|...|++++|+..|++..+ +.+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 445556666666677777777777776665 2345566666666766 777777777777776654 556666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 048751 681 SLIKAYSK----IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE----LGMVTEAESMFNDIREKGQVDAVSFAAMM 752 (1004)
Q Consensus 681 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 752 (1004)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +..++..+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 66666766 777777777777776653 55666667777777 777777777777777654 556666777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 048751 753 YLYKT----MGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT----NGQLRQCGELLHEMLTQKLLPDNGTFKVLFTI 824 (1004)
Q Consensus 753 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 824 (1004)
.+|.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|+..+++..+.+. ...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHH
Confidence 77776 777777777777777643 35566667777777 7777777777777766532 4455556666
Q ss_pred HHc----CCCcHHHHHHHHhHhhccC
Q 048751 825 LKK----GGFPIEAVKQLQSSYQEVK 846 (1004)
Q Consensus 825 ~~~----~g~~~~A~~~l~~~~~~~~ 846 (1004)
+.+ .++.++|.++++++.+..+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 666 6666666666666655443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-10 Score=131.76 Aligned_cols=451 Identities=11% Similarity=-0.022 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC---HHHHHHHHh
Q 048751 448 QEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGL---WAEAETVFY 524 (1004)
Q Consensus 448 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 524 (1004)
.+.+..+++.+.... -|..++..++..+.+.+.++.+..+|++++...|.....|...+..-.+.|. .+.+..+|+
T Consensus 49 ~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp SCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 344445555554433 3666777777777777788888888888888888888888877777777777 888888888
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHcCCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHc---------C
Q 048751 525 GKRDLVGQKKSVVEYNVMIKAYGKSKLY--------DKAFSLFKVMKN-LGT-WPD-ECTYNSLVQMFAG---------G 584 (1004)
Q Consensus 525 ~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~p~-~~t~~~ll~~~~~---------~ 584 (1004)
+.......+|++..|...+....+.++. +...++|+.... .|. .|+ ...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 7766422237777777776655544433 223356665443 344 443 3455555544332 2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 585 DLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYF 664 (1004)
Q Consensus 585 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 664 (1004)
++++.+..+|..++......-..+|..... +.+.-+...+.+++.+. ..+++.|...+
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~~ 265 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHHHHHH
Confidence 235556666666664211111122221111 11100001111111111 11223333333
Q ss_pred HHHHH--CCCC---------------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCCHH
Q 048751 665 RMMRE--CGLW---------------A-----N---QIVLTSLIKAYSKIG-------CLEGAKQVYEKMKEMEGGPDTV 712 (1004)
Q Consensus 665 ~~m~~--~g~~---------------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~ 712 (1004)
.++.. .++. | + ...|...+..--..+ ..+.+..+|+++....+ -...
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHH
Confidence 33221 0110 1 0 123444443222211 12334566777666433 3667
Q ss_pred HHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC---
Q 048751 713 ASNTMISLYAELGMVTEAE-SMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL---------LRD--- 779 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~p~--- 779 (1004)
.|...+..+...|+.++|. .+|++.....|.+...|...+......|++++|..+|++++.... .|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 7777777777778877885 888888877777777778888888888888888888887775310 131
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCC-CcHHHHHHHHhHhhccCCch
Q 048751 780 ---------VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGG-FPIEAVKQLQSSYQEVKPYA 849 (1004)
Q Consensus 780 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~l~~~~~~~~~~~ 849 (1004)
..+|...+....+.|..+.|..+|.++++.-.......|...+..-.+.| +.+.|.++++..++..+...
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~ 504 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch
Confidence 23566777777777778888888888766411112233333322223333 46777777777777665543
Q ss_pred hh-hHHHHHHHHHhhhHhhhhHHHHHHhhhcc--CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048751 850 SE-AIITSVYSVVGLNALALGTCETLIKAEAY--LDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINL 924 (1004)
Q Consensus 850 ~~-~~~~~l~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 924 (1004)
.. ..+..+....|+.+.|..+|++++...++ .....|...+..-...|+.+.+.++.+++.+ ..|+......+
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f 580 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEF 580 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHH
Confidence 32 22334455566677777777777666432 1234566666666667777777777777766 34544333333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-11 Score=125.70 Aligned_cols=222 Identities=14% Similarity=0.065 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048751 537 VEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAG----GDLMGQAVDLLAEMQGAGFKPQCLTFSSV 612 (1004)
Q Consensus 537 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 612 (1004)
.++..+...+...|++++|+..|++..+.+ +..++..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 334444444455555555555555544421 33344444444444 555555555555555433 44445555
Q ss_pred HHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 613 IAAYAR----LGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAA----TGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 613 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555 555555555555555542 44555555555555 555566666655555543 3444445555
Q ss_pred HHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 685 AYSK----IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE----LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 685 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
.+.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|...|++..+.++ ..++..+..+|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 5554 555556665555555532 34445555555555 5566666666665555433 445555555555
Q ss_pred h----cCCHHHHHHHHHHHHHCC
Q 048751 757 T----MGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 757 ~----~g~~~~A~~~~~~~~~~~ 775 (1004)
. .+++++|+..+++..+.|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 5 556666666666655544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-11 Score=124.72 Aligned_cols=202 Identities=10% Similarity=-0.034 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.++++.+.+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 44566677777777888888888887777653 34567777777788888888888888887776543 45667777777
Q ss_pred HHHHc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHH
Q 048751 685 AYSKI-GCLEGAKQVYEKMKEMEGGPD-TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 685 ~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 762 (1004)
.+... |++++|...++++.+.+..|+ ...+..++.++...|++++|...++++.+..|.+...+..++.++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 88888 888888888888777322333 4567777788888888888888888888887778888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 763 EAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 763 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+|+..++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888877754213456666777777788888888888777754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-11 Score=125.88 Aligned_cols=96 Identities=8% Similarity=0.035 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFA 791 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 791 (1004)
..+..++..+...|++++|.+.|+++.+..|.+..++..++.+|...|++++|+..++++.+... .+..++..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555554321 23444555555555
Q ss_pred Hc-CCHHHHHHHHHHHHH
Q 048751 792 TN-GQLRQCGELLHEMLT 808 (1004)
Q Consensus 792 ~~-g~~~~A~~~~~~~~~ 808 (1004)
.. |++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALA 105 (225)
T ss_dssp TTTCCHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHHHHc
Confidence 55 555555555555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-11 Score=127.86 Aligned_cols=168 Identities=15% Similarity=0.071 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWA-NQIVLTSLIK 684 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~ 684 (1004)
..++..+...|...|++++|...++++.+.. +.+...+..+...|...|++++|.++++++.+.+..| +...+..+..
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 3444445555555555555555555554432 2244555555555555555555555555555421222 3344555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA 764 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 764 (1004)
.+...|++++|...++++.+.... +...+..++..+...|++++|...++++.+..|.+...+..++.++...|++++|
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence 556666666666666665554322 4555666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHCC
Q 048751 765 IDAAEEMKLSG 775 (1004)
Q Consensus 765 ~~~~~~~~~~~ 775 (1004)
...++++.+..
T Consensus 229 ~~~~~~~~~~~ 239 (252)
T 2ho1_A 229 ASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
Confidence 66666666543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-09 Score=127.36 Aligned_cols=231 Identities=8% Similarity=-0.012 Sum_probs=160.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 589 QAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAV-DLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMM 667 (1004)
Q Consensus 589 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 667 (1004)
.+..+|++++.. ++-....|...+..+.+.|+.++|. .+|++.... ++.+...|..++....+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345567766654 3456677777777777788888886 888888764 3456666777777788888888888888887
Q ss_pred HHCCC---------CCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-
Q 048751 668 RECGL---------WAN------------QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG- 725 (1004)
Q Consensus 668 ~~~g~---------~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 725 (1004)
.+... .|+ ..+|...+....+.|..+.|..+|..+.+.........|...+..-.+.+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 65310 121 23577777777778888888888888877512223334433333334444
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 726 MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR--DVISYNQVMACFATNGQLRQCGELL 803 (1004)
Q Consensus 726 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 803 (1004)
+++.|.++|+...+..|.+...|...+......|+.+.|..+|++.+.....+ ....|...+..-...|+.+.+..+.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 48888888888888888888888888888888888888888888888765322 2456777777777888888888888
Q ss_pred HHHHHCCCCCChhhHHHHHH
Q 048751 804 HEMLTQKLLPDNGTFKVLFT 823 (1004)
Q Consensus 804 ~~~~~~~~~p~~~~~~~l~~ 823 (1004)
+++.+. .|+......+++
T Consensus 565 ~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 565 KRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp HHHHHH--STTCCHHHHHHH
T ss_pred HHHHHh--CCCCcHHHHHHH
Confidence 888764 455444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-12 Score=130.30 Aligned_cols=165 Identities=17% Similarity=0.161 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKA 685 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 685 (1004)
...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.++++++.+... .+...+..+...
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 134 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTV 134 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3344444444444444444444444444332 22344444444444444555555555544444321 233444444444
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048751 686 YSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAI 765 (1004)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 765 (1004)
+...|++++|...++++.+... .+...+..++..+.+.|++++|...|+++.+..|.+..++..++.+|...|++++|+
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555555544444322 134444445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHH
Q 048751 766 DAAEEMKL 773 (1004)
Q Consensus 766 ~~~~~~~~ 773 (1004)
..++++.+
T Consensus 214 ~~~~~~~~ 221 (243)
T 2q7f_A 214 EMLDKAID 221 (243)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 55555554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-12 Score=130.13 Aligned_cols=218 Identities=14% Similarity=0.097 Sum_probs=162.3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048751 534 KSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVI 613 (1004)
Q Consensus 534 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 613 (1004)
.....|..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++.+.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3455677777778888888888888888877543 257777888888888888888888888887753 45677888888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 048751 614 AAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLE 693 (1004)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 693 (1004)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|+.+++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999988764 45678888899999999999999999999887643 46778888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 694 GAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 694 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
+|...++++.+... .+..++..+..+|...|++++|...++++.+..|.+..++..+.....
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 99999999887654 367788899999999999999999999999999988888876655443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-12 Score=144.81 Aligned_cols=303 Identities=13% Similarity=0.054 Sum_probs=202.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC
Q 048751 638 EPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWAN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEM----EGGP 709 (1004)
Q Consensus 638 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~ 709 (1004)
......+......+...|++++|+.+|+++.+.+. .+ ..++..+...+...|++++|...++++... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34566777788888899999999999998887643 23 246778888888999999999988876543 1111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CC----HHHHHHHHHHHHhcCC--------------------HH
Q 048751 710 -DTVASNTMISLYAELGMVTEAESMFNDIREKGQ--VD----AVSFAAMMYLYKTMGM--------------------LD 762 (1004)
Q Consensus 710 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~--------------------~~ 762 (1004)
...++..+...|...|++++|...++++.+..+ .+ ..++..++..|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 244677788888889999999999988877642 12 4478888888888888 88
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHcCCCcH
Q 048751 763 EAIDAAEEMKLS----GLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKL-LPD----NGTFKVLFTILKKGGFPI 832 (1004)
Q Consensus 763 ~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~ 832 (1004)
+|+..+++..+. +..+. ..++..+...+...|++++|...+++.++... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888876542 11122 34677788888888888888888888754210 111 113444555555555555
Q ss_pred HHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048751 833 EAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ 912 (1004)
Q Consensus 833 ~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 912 (1004)
+|...++++++..+... .......++..++..|...|++++|...++++.+.
T Consensus 245 ~A~~~~~~al~~~~~~~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLK----------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHTT----------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCc----------------------------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 55555555433211100 00001446778888888888888888888888752
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHc----CCCCCc-HHHHHHHHHHHHhcCCh
Q 048751 913 ----GLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKY----GKMEPN-ENLFKAVIDAYRNANRE 969 (1004)
Q Consensus 913 ----g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~ 969 (1004)
+-.+ ...++..+..++...|++++|..++++... .+..+. ..++..++.++...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1111 145777888888888888888888876532 222222 45677778888877765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-12 Score=142.24 Aligned_cols=304 Identities=15% Similarity=0.153 Sum_probs=222.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 048751 603 KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPN----EVVYGSLINGFAATGKVEEALQYFRMMREC----GLWA 674 (1004)
Q Consensus 603 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~ 674 (1004)
......+......+...|++++|...|+++.+.+ +.+ ..++..+...|...|++++|...+++..+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4566677888899999999999999999998863 233 357888999999999999999999987543 2111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCC--------------------HH
Q 048751 675 -NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGG-PD----TVASNTMISLYAELGM--------------------VT 728 (1004)
Q Consensus 675 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~ 728 (1004)
...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456788889999999999999999988764221 12 3477888999999999 99
Q ss_pred HHHHHHHHHHHcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHH
Q 048751 729 EAESMFNDIREKG------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL-LRD----VISYNQVMACFATNGQLR 797 (1004)
Q Consensus 729 ~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~ 797 (1004)
+|...+++..+.. +....++..++.+|...|++++|+..+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 9999999876642 22345788999999999999999999999876321 122 347888999999999999
Q ss_pred HHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHH
Q 048751 798 QCGELLHEMLTQKL-LPD----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCE 872 (1004)
Q Consensus 798 ~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~ 872 (1004)
+|...+++...... .++ ..++..+...+...|++++|...++++++..+...
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----------------------- 301 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN----------------------- 301 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-----------------------
Confidence 99999999864311 011 23445555566666666666666655433211100
Q ss_pred HHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChh
Q 048751 873 TLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ----GLEP-DIVTCINLVGCYGKAGLVE 935 (1004)
Q Consensus 873 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~l~~~~~~~g~~~ 935 (1004)
..+....++..++.+|...|++++|.+.+++.++. |..+ ...++..+..++...|+..
T Consensus 302 -----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 302 -----DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -----CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 00112457888999999999999999999998752 2223 2457777888888887763
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-12 Score=142.85 Aligned_cols=270 Identities=13% Similarity=0.070 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQ----IVLTSLIKAYSKIGCLEGAKQVYEKMKEM----EG-GPDTV 712 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 712 (1004)
..+..+...+...|++++|+.+|+++.+.+. .+. ..+..+...+...|++++|...++++.+. +. .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 4455566677778888888888887777543 232 35667777777778888887777776543 11 11234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKG------QVDAVSFAAMMYLYKTMGM-----------------LDEAIDAAE 769 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 769 (1004)
++..+...|...|++++|...++++.+.. +....++..++.+|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 56667777777777777777777766552 2334466677777777777 777777766
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHcCCCcHHHHHHHH
Q 048751 770 EMKLS----GLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKL-LPD----NGTFKVLFTILKKGGFPIEAVKQLQ 839 (1004)
Q Consensus 770 ~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~l~ 839 (1004)
+..+. +..+. ..++..+...+...|++++|...+++.++... .++ ...+..+...+...|++++|+..++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 65431 11111 33556666666666777777666666643210 001 0123333344444444444444443
Q ss_pred hHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhcc-----CCchhHHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 048751 840 SSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAY-----LDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ-- 912 (1004)
Q Consensus 840 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-- 912 (1004)
++ ++.... ....++..++.+|...|++++|...+++.++.
T Consensus 288 ~a---------------------------------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 288 RT---------------------------------LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HH---------------------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HH---------------------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33 322111 11345666777777777777777777777642
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 913 --GLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 913 --g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
+..+ ...++..+..++.+.|++++|..++++..
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1111 13366667777777777777777776654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-12 Score=143.23 Aligned_cols=277 Identities=15% Similarity=0.109 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNE----VVYGSLINGFAATGKVEEALQYFRMMREC----GL-WANQ 676 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~ 676 (1004)
...+..+...+...|++++|+..|+++.+.+ +.+. ..|..+...|...|++++|+..+++..+. +. ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 4455667788899999999999999998864 2233 57888999999999999999999988653 11 1234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEME-----GGPDTVASNTMISLYAELGM-----------------VTEAESMF 734 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~ 734 (1004)
.++..+...|...|++++|...++++.+.. ......++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 578888899999999999999999876541 11234477888999999999 99999999
Q ss_pred HHHHHcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 735 NDIREKG------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-RD----VISYNQVMACFATNGQLRQCGELL 803 (1004)
Q Consensus 735 ~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~ 803 (1004)
++..+.. +....++..++.+|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9876643 223457889999999999999999999998864211 12 237888999999999999999999
Q ss_pred HHHHHCCCC-CC----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhh
Q 048751 804 HEMLTQKLL-PD----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAE 878 (1004)
Q Consensus 804 ~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~ 878 (1004)
++.+..... .+ ..++..+...+...|+.++|...+++++...+. .- .
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------------------------~~--~ 338 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE--------------------------LG--D 338 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------------HT--C
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------------CC--C
Confidence 998643110 11 234555555666666666666666554332111 00 0
Q ss_pred ccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 879 AYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 879 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
......++..++.+|...|++++|.+.|++.++
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 011244788899999999999999999999987
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-11 Score=115.74 Aligned_cols=166 Identities=12% Similarity=0.088 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
+..+|..+...|.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|++++|+..+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 45667777777777777777777777776653 33466777777777777777777777777766543 35556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA 764 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 764 (1004)
.+...++++.|...+.+..+..+. +...+..+..+|.+.|++++|++.|+++.+..|.+..+|..++.+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 677777777777777776665433 5666667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHH
Q 048751 765 IDAAEEMKL 773 (1004)
Q Consensus 765 ~~~~~~~~~ 773 (1004)
+..|++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777776
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.9e-11 Score=117.29 Aligned_cols=171 Identities=13% Similarity=0.109 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
+..+|..+...|.+.|++++|++.|+++.+..|.++.+|..++.+|...|++++|+..+++...... .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 5667777888888888888888888888888888888888888888888888888888888777542 345666777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhh
Q 048751 790 FATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALG 869 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 869 (1004)
+...+++++|...+.+..... +.+...+..+..++.+.| ++++|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g---------------------------------~~~~A~~ 128 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMG---------------------------------EHDKAIE 128 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT---------------------------------CHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhC---------------------------------CchhHHH
Confidence 777888888887777775431 122333333333333333 3444444
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 048751 870 TCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDI 918 (1004)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 918 (1004)
.++++++.. |.+..+|..++.+|...|++++|++.|+++++ +.|+.
T Consensus 129 ~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 129 AYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTHHH
T ss_pred HHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh--CCccC
Confidence 444444443 34667788888888888888888888888877 45643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.7e-12 Score=134.83 Aligned_cols=272 Identities=15% Similarity=0.059 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD----TVASNTMISLYAELGMVTEAESMFNDIREKG------QVDAVS 747 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~ 747 (1004)
.+......+...|++++|...++++.+.... + ...+..+...+...|++++|...++++.+.. +....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4445566677888888888888887775433 3 3566677778888888888888888765542 223556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 048751 748 FAAMMYLYKTMGMLDEAIDAAEEMKLSGL-LRD----VISYNQVMACFATNGQ--------------------LRQCGEL 802 (1004)
Q Consensus 748 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~~ 802 (1004)
+..++..|...|++++|+..+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77777888888888888888777664211 012 3366677777777777 7777776
Q ss_pred HHHHHHC----CCCC-ChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhh
Q 048751 803 LHEMLTQ----KLLP-DNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKA 877 (1004)
Q Consensus 803 ~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~ 877 (1004)
+++.+.. +..+ ....+.. ++.++...|++++|++.++++++.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~---------------------------------l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGN---------------------------------LGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH---------------------------------HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH---------------------------------HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6665321 0000 0112222 334455566666666666665554
Q ss_pred hcc-----CCchhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcC
Q 048751 878 EAY-----LDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ----GLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKYG 947 (1004)
Q Consensus 878 ~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~ 947 (1004)
... ....++..++..|...|++++|...+++..+. +..+ ...++..+..++...|++++|...++++...
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 221 11337888899999999999999999988752 1111 1557788888999999999999998876421
Q ss_pred ----CCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 048751 948 ----KMEPN-ENLFKAVIDAYRNANREDLADLACQEMRTAF 983 (1004)
Q Consensus 948 ----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 983 (1004)
+..+. ..++..++.+|...|++++|...+++.....
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 11111 3477889999999999999999999877654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=133.87 Aligned_cols=272 Identities=14% Similarity=0.084 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCH
Q 048751 641 EVVYGSLINGFAATGKVEEALQYFRMMRECGLWAN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEM----EGG-PDT 711 (1004)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~ 711 (1004)
...+......+...|++++|+.+|+++.+... .+ ...+..+...+...|++++|.+.+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34556677888999999999999999988643 23 357888899999999999999999987643 111 124
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQ--VD----AVSFAAMMYLYKTMGM--------------------LDEAI 765 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~--------------------~~~A~ 765 (1004)
.++..+...+...|++++|...+++..+..+ .+ ..++..++..|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5778889999999999999999999877642 22 4478899999999999 99999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHcCCCcHHHH
Q 048751 766 DAAEEMKLS----GLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQKL-LPD----NGTFKVLFTILKKGGFPIEAV 835 (1004)
Q Consensus 766 ~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~ 835 (1004)
..+++.... +..+. ..++..+...+...|++++|...+++..+... .++ ..++..+...+..
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 235 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF-------- 235 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--------
Confidence 999887642 21122 45788888999999999999999999864310 011 1133334444444
Q ss_pred HHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccC-----CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048751 836 KQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYL-----DSFIYNVAIYAFKSSGKNDKALNTFMKML 910 (1004)
Q Consensus 836 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 910 (1004)
.|++++|++.+++.++..... ...++..++..|...|++++|...+++++
T Consensus 236 -------------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 236 -------------------------LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp -------------------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------------cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 444455555555444432211 14568888999999999999999999887
Q ss_pred HC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 048751 911 DQ----GLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKY 946 (1004)
Q Consensus 911 ~~----g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~ 946 (1004)
+. +-.+ ...++..+..++.+.|++++|..+++++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 52 1111 144778889999999999999999988753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=131.99 Aligned_cols=243 Identities=14% Similarity=0.083 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMREC-------GLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM------EG- 707 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~- 707 (1004)
.++..+...+...|++++|+.+++++.+. .......++..+...+...|++++|...++++.+. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33444444444444444444444444331 11112334444555555555555555555554432 11
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 048751 708 GPDTVASNTMISLYAELGMVTEAESMFNDIREKG--------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS----- 774 (1004)
Q Consensus 708 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 774 (1004)
.....++..+...|...|++++|...++++.+.. +....++..++.++...|++++|+..++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1123455666667777777777777777666542 234456777777888888888888887777653
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhcc
Q 048751 775 -GLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQ-------KLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEV 845 (1004)
Q Consensus 775 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 845 (1004)
+..|+ ..++..+...+...|++++|..+++++++. ...+...........+...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 251 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK---------------- 251 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-----------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc----------------
Confidence 11233 456777788888888888888888887542 11121111111111111111
Q ss_pred CCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 846 KPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 846 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
..+...+.+.++...+++..... +.+..+|..++.+|...|++++|.+.|++.++
T Consensus 252 ----------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 252 ----------GKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----------------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------CchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11223334444555555555443 33556777788888888888888888887765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-11 Score=138.21 Aligned_cols=212 Identities=11% Similarity=0.003 Sum_probs=139.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 691 CLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMV-TEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAE 769 (1004)
Q Consensus 691 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 769 (1004)
.++++...++....... .+...+..+...+...|++ ++|++.|+++.+..|.+..+|..++.+|...|++++|+..|+
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566666665554332 3566666777777777777 777777777777777777777777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHh
Q 048751 770 EMKLSGLLRDVISYNQVMACFATN---------GQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQS 840 (1004)
Q Consensus 770 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~ 840 (1004)
++++.. |+...+..+...+... |++++|+..+++.++.. +.+...+..+.
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg------------------ 220 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILG------------------ 220 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH------------------
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHH------------------
Confidence 777643 5556666666666666 66666666666665431 11222222222
Q ss_pred HhhccCCchhhhHHHHHHHHH--------hhhHhhhhHHHHHHhhhcc--CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048751 841 SYQEVKPYASEAIITSVYSVV--------GLNALALGTCETLIKAEAY--LDSFIYNVAIYAFKSSGKNDKALNTFMKML 910 (1004)
Q Consensus 841 ~~~~~~~~~~~~~~~~l~~~~--------~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 910 (1004)
.++... |++++|++.++++++..+. .+..+|..++.+|...|++++|++.|++++
T Consensus 221 ---------------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 221 ---------------NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp ---------------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233333 6677777777777776531 477788888888888888888888888887
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 048751 911 DQGLEP-DIVTCINLVGCYGKAGLVEGVKRIH 941 (1004)
Q Consensus 911 ~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~ 941 (1004)
+ +.| +..++..+..++...|++++|.+.+
T Consensus 286 ~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 286 A--LDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H--hCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 456 4567777777777777777776644
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-10 Score=120.41 Aligned_cols=213 Identities=9% Similarity=0.042 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 048751 728 TEAESMFNDIREKGQVDAVSFAAMMYLYKT-------MGML-------DEAIDAAEEMKLSGLLRD-VISYNQVMACFAT 792 (1004)
Q Consensus 728 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 792 (1004)
++|..+|+++.+..|.++..|..++..+.. .|++ ++|..+|++.++.- .|+ ...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHh
Confidence 445555555555555555555555554432 3443 55555555555420 132 3455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHH---HHhhhHhh
Q 048751 793 NGQLRQCGELLHEMLTQKLLPDNG--TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYS---VVGLNALA 867 (1004)
Q Consensus 793 ~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~---~~~~~~~A 867 (1004)
.|++++|..+|+++++ +.|+.. .+..+...+.+.|+.++|...++++++..+.... ..+..... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH-VYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH-HHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHcCCHHHH
Confidence 5555555555555543 223211 3333333333444444444444443333222110 00000011 13455555
Q ss_pred hhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 868 LGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQG-LEP--DIVTCINLVGCYGKAGLVEGVKRIHSQL 944 (1004)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p--d~~t~~~l~~~~~~~g~~~~A~~~~~~~ 944 (1004)
.+.|+++++.. |.+...|..++..+.+.|+.++|..+|+++++.. +.| ....|..++....+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666555554 3356666666666666677777777777666642 344 2445666666666666666666666665
Q ss_pred H
Q 048751 945 K 945 (1004)
Q Consensus 945 ~ 945 (1004)
.
T Consensus 268 ~ 268 (308)
T 2ond_A 268 F 268 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=6e-11 Score=131.44 Aligned_cols=300 Identities=12% Similarity=-0.030 Sum_probs=180.3
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCCHH--HHHHHHHH--HHHcCCHHHHH-----------HHHHHHHhCCCCCCH--
Q 048751 651 FAATGKVEEALQYFRMMREC--GLWANQI--VLTSLIKA--YSKIGCLEGAK-----------QVYEKMKEMEGGPDT-- 711 (1004)
Q Consensus 651 ~~~~g~~~~A~~~~~~m~~~--g~~~~~~--~~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~-- 711 (1004)
+.+.+++++|..+++++.+. ....|.. .|-.++.. ....+.++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45678888888888777543 1223332 33333322 12233444444 555554432111010
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---
Q 048751 712 --VASNTMISLYAELGMVTEAESMFNDIREKG---QV---DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-RD--- 779 (1004)
Q Consensus 712 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~--- 779 (1004)
..+...+..+...|++++|...|+++.+.. +. ...++..++.+|...|++++|+..+++..+.... ++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 011124455666777777777777776542 11 3346677777777777777777777766642100 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCh----hhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhh
Q 048751 780 --VISYNQVMACFATNGQLRQCGELLHEMLTQKL-LPDN----GTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEA 852 (1004)
Q Consensus 780 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 852 (1004)
..+++.+...|...|++++|...+++.++... .++. .++..+
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l------------------------------- 230 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI------------------------------- 230 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH-------------------------------
Confidence 23566666667777777777777766643210 0111 122333
Q ss_pred HHHHHHHHHhhhHhhhhHHHHHHhh-----hccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC-HHHHHH
Q 048751 853 IITSVYSVVGLNALALGTCETLIKA-----EAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQG---LEPD-IVTCIN 923 (1004)
Q Consensus 853 ~~~~l~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~pd-~~t~~~ 923 (1004)
+.++...|++++|++.++++++. ..+....++..++.+|...|++++|.+.+++.++.. -.|. ...+..
T Consensus 231 --g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 231 --GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455555666666666665552 213346678999999999999999999999988631 1222 234667
Q ss_pred HHHHHHhcCC---hhHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCC
Q 048751 924 LVGCYGKAGL---VEGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRNANREDLADLACQEMRTAFESP 986 (1004)
Q Consensus 924 l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 986 (1004)
+...+...|+ .++|..+++.. +..|. ...+..++.+|...|++++|...+++........
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 8888889999 67777777665 34444 4578899999999999999999999888655443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-11 Score=136.49 Aligned_cols=211 Identities=12% Similarity=0.027 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048751 588 GQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQL-SNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRM 666 (1004)
Q Consensus 588 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 666 (1004)
+++...++...... +.+...+..+...|...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|++.|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444443321 33555566666666666666 66666666665542 23356666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 048751 667 MRECGLWANQIVLTSLIKAYSKI---------GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL--------GMVTE 729 (1004)
Q Consensus 667 m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 729 (1004)
..+.. |+...+..+...+... |++++|...++++.+..+. +...|..+..+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 66543 4455666666666666 6677777777766665433 556666677777666 77777
Q ss_pred HHHHHHHHHHcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 730 AESMFNDIREKGQ---VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 730 A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|+..|+++.+..| .+..+|..++.+|...|++++|+..|++..+... .+...+..+..++...|++++|+..+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777776 6777777777777777777777777777776442 235566677777777777777766443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.7e-11 Score=132.31 Aligned_cols=232 Identities=8% Similarity=-0.065 Sum_probs=136.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEG-GP----DTVASNTMISLYAELGMVTEAESMFNDIREKGQ-------VDAVSFA 749 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~ 749 (1004)
....+...|++++|...+++..+.-. .+ ...++..+...|...|++++|...+++..+..+ ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44455666777777777777655311 11 224566677777777777777777777665431 1234667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCChhhHH
Q 048751 750 AMMYLYKTMGMLDEAIDAAEEMKLSGLL-RD----VISYNQVMACFATNGQLRQCGELLHEMLTQ----KL-LPDNGTFK 819 (1004)
Q Consensus 750 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 819 (1004)
.++.+|...|++++|+..+++..+.... ++ ..++..+...|...|++++|...+++.++. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777777777777777777776642100 11 236677777777788888887777777541 22 22234455
Q ss_pred HHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCC-
Q 048751 820 VLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGK- 898 (1004)
Q Consensus 820 ~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 898 (1004)
.+...+.+.|++++|...++++++..+.. +.+.....++.+...|...|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------------~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKA-----------------------------GDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------------------------TCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHc-----------------------------CCHHHHHHHHHHHHHHhCCCcH
Confidence 66666666666666666666544321110 000011224556666777776
Q ss_pred --hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 899 --NDKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 899 --~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
.++|+.++++. +..|+ ...+..+...+.+.|++++|..++++..
T Consensus 320 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 320 EAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666554 23332 3455667777777777777777776653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-09 Score=116.37 Aligned_cols=219 Identities=11% Similarity=0.002 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------HcCCH-------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048751 588 GQAVDLLAEMQGAGFKPQCLTFSSVIAAYA-------RLGQL-------SNAVDLFHEMRRAGVEPNEVVYGSLINGFAA 653 (1004)
Q Consensus 588 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 653 (1004)
++|..+|++++... +.+...|..++..+. +.|++ ++|..+|++....-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666532 445556666665554 34665 7888888888763113346678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHH
Q 048751 654 TGKVEEALQYFRMMRECGLWANQI-VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYA-ELGMVTEAE 731 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 731 (1004)
.|++++|.++|+++.+... .+.. +|..++..+.+.|++++|..+|++..+.... +...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887432 1233 7888888888888888888888888876542 4444544433322 268899999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 732 SMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG-LLR--DVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
++|+++.+..|.+...|..++..+.+.|++++|..+|++..... +.| ....|..++......|+.++|..+++++++
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998888888888888888888888899999999999888863 344 356788888888888888888888888865
Q ss_pred C
Q 048751 809 Q 809 (1004)
Q Consensus 809 ~ 809 (1004)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-10 Score=122.68 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc------CCC
Q 048751 572 CTYNSLVQMFAGGDLMGQAVDLLAEMQGA-------GFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA------GVE 638 (1004)
Q Consensus 572 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 638 (1004)
.++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++.... +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455555555555555555555555441 11222334445555555555555555555554432 111
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----
Q 048751 639 P-NEVVYGSLINGFAATGKVEEALQYFRMMREC------GLWA-NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM----- 705 (1004)
Q Consensus 639 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 705 (1004)
| ...++..+...|...|++++|+.+++++.+. +..| ....+..+...+...|++++|.+.++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1 1334445555555555555555555554432 1111 1223444444444445555555444444332
Q ss_pred -CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 706 -EGGP-DTVASNTMISLYAELGMVTEAESMFNDIR 738 (1004)
Q Consensus 706 -~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (1004)
+..| ...++..+..+|...|++++|...++++.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1011 12233444444444444444444444444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-09 Score=116.09 Aligned_cols=160 Identities=15% Similarity=0.021 Sum_probs=74.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHH
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNE----VVYGSLINGFAATGKVEEALQYFRMMRECGL-WANQ----IVLTSLI 683 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li 683 (1004)
...+...|++++|...+++.....-..+. .+++.+...+...|++++|...+++...... ..+. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33445566666666666665553211121 1344455555566666666666655543210 0111 1233444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC----CC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEME----GG--P-DTVASNTMISLYAELGMVTEAESMFNDIREKGQV-----DAVSFAAM 751 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l 751 (1004)
..+...|++++|...+++..+.. .. | ....+..+...+...|++++|...+++..+..+. ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 45555555555555555543321 11 1 1123334445555555555555555555443321 12334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 048751 752 MYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
+..+...|++++|...+++..
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-09 Score=118.66 Aligned_cols=272 Identities=13% Similarity=-0.014 Sum_probs=168.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH----HHH
Q 048751 644 YGSLINGFAATGKVEEALQYFRMMRECGLWANQI----VLTSLIKAYSKIGCLEGAKQVYEKMKEMEG-GPDT----VAS 714 (1004)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~ 714 (1004)
.......+...|++++|...+++........+.. ++..+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556667888888888888877654323332 455666777788888888888887665321 1122 234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHH
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKG--------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL--R--DVIS 782 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p--~~~~ 782 (1004)
..+...+...|++++|...+++..+.. +....++..++.++...|++++|...+++..+.... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 566777888888888888888876643 112345667778888888888888888887764321 1 1346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHH
Q 048751 783 YNQVMACFATNGQLRQCGELLHEMLTQKLLPDN-GTFK-----VLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITS 856 (1004)
Q Consensus 783 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~-----~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 856 (1004)
+..+...+...|++++|...+++.....-.++. ..+. .....+...|+.++|...+++.....+...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~------- 249 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN------- 249 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc-------
Confidence 677777788888888888888887543111111 1111 112234566666666666666544221100
Q ss_pred HHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhc
Q 048751 857 VYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQ----GLEPDI-VTCINLVGCYGKA 931 (1004)
Q Consensus 857 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~pd~-~t~~~l~~~~~~~ 931 (1004)
......+..++.++...|++++|.+.++++.+. |..++. .++..+..++...
T Consensus 250 -----------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 250 -----------------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp -----------------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 000123556677777778888888887777642 222222 2555666777778
Q ss_pred CChhHHHHHHHHHH
Q 048751 932 GLVEGVKRIHSQLK 945 (1004)
Q Consensus 932 g~~~~A~~~~~~~~ 945 (1004)
|+.++|...+++..
T Consensus 307 g~~~~A~~~l~~al 320 (373)
T 1hz4_A 307 GRKSDAQRVLLDAL 320 (373)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88888887776653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-09 Score=119.22 Aligned_cols=199 Identities=8% Similarity=-0.015 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCH
Q 048751 643 VYGSLINGFAATGKVEEALQYFRMMRECG--L---WA-NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM----EGG-PDT 711 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~ 711 (1004)
++..+...|...|+++.|+..+++..+.. . .+ ...++..+...|...|++++|.+.+++..+. +.. ...
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34444445555555555555544443210 0 00 1223444555555555555555555544331 100 012
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC-HHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIRE-----KGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL---RD-VIS 782 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~-~~~ 782 (1004)
.++..+..+|...|++++|+..|++..+ ..|....++..++.+|.+.|++++|+..+++..+.... +. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2445555556666666666666665555 33444555566666666666666666666665542111 11 223
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHcCCCcHHHHHHHHhHhhc
Q 048751 783 YNQVMACFATNGQ---LRQCGELLHEMLTQKLLPD-NGTFKVLFTILKKGGFPIEAVKQLQSSYQE 844 (1004)
Q Consensus 783 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 844 (1004)
+..+...+...|+ +.+|+.++++. +..|+ ...+..+...+...|+.++|..+++.+++.
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4444444445555 55555555441 22222 223445555666666666666666665554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-10 Score=130.78 Aligned_cols=165 Identities=12% Similarity=0.122 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKA 685 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 685 (1004)
..+|+.+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++.++... -+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445555555555555555555555554432 22244555555555555555555555555544321 234445555555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048751 686 YSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAI 765 (1004)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 765 (1004)
+...|++++|++.|++..+.... +..+|+.+..+|.+.|++++|++.|+++.+..|.+..+|..++.+|...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 55555555555555554443322 34444455555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHH
Q 048751 766 DAAEEMKL 773 (1004)
Q Consensus 766 ~~~~~~~~ 773 (1004)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.8e-09 Score=115.72 Aligned_cols=231 Identities=10% Similarity=0.014 Sum_probs=138.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCC-HHHHHH
Q 048751 718 ISLYAELGMVTEAESMFNDIREKG---Q---VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL-----LRD-VISYNQ 785 (1004)
Q Consensus 718 ~~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~-~~~~~~ 785 (1004)
+..+...|++++|...|+++.+.. + ....++..++.+|...|++++|+..+++..+... .+. ..+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 334455566666666666555432 1 1233455555556666666666655555543210 011 234455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhh
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQKL-LPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLN 864 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 864 (1004)
+...|...|++++|...+++.++..- .++.... ......++.++...|++
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~-----------------------------~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI-----------------------------AISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-----------------------------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH-----------------------------HHHHHHHHHHHHHCCCH
Confidence 55555555555555555555532100 0000000 00112234556667777
Q ss_pred HhhhhHHHHHHh-----hhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC--
Q 048751 865 ALALGTCETLIK-----AEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGL---EPD-IVTCINLVGCYGKAGL-- 933 (1004)
Q Consensus 865 ~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~pd-~~t~~~l~~~~~~~g~-- 933 (1004)
++|++.++++++ .. +....++..++.+|.+.|++++|...+++.++..- .|. ...+..+...+...|+
T Consensus 239 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 777777777766 33 33467889999999999999999999999987311 232 3456666667777888
Q ss_pred -hhHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048751 934 -VEGVKRIHSQLKYGKMEPN-ENLFKAVIDAYRNANREDLADLACQEMRT 981 (1004)
Q Consensus 934 -~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 981 (1004)
.++|..+++.. +..|+ ...+..++.+|...|++++|...+++...
T Consensus 318 ~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 318 KIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777776653 33444 45778899999999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-09 Score=105.04 Aligned_cols=161 Identities=13% Similarity=0.107 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048751 644 YGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE 723 (1004)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (1004)
|..+...+...|++++|+..++.+.+... .+..++..+...+...|++++|...++++.+... .+...+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 33344444444444444444444443221 2334444444444445555555555544444322 234444445555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 724 LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELL 803 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 803 (1004)
.|++++|.+.++++.+..|.+...+..++.++...|++++|+..++++.+... .+...+..+...+...|++++|...+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555554331 23444555555555555555555555
Q ss_pred HHHH
Q 048751 804 HEML 807 (1004)
Q Consensus 804 ~~~~ 807 (1004)
+++.
T Consensus 168 ~~~~ 171 (186)
T 3as5_A 168 KKAN 171 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-09 Score=104.29 Aligned_cols=165 Identities=19% Similarity=0.128 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 607 LTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAY 686 (1004)
Q Consensus 607 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 686 (1004)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++.+.+... .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 456667777888888888888888876543 34677888888888888999999999888887643 4677888888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 687 SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
...|++++|.+.++++.+... .+...+..++..+...|++++|...++++.+..|.+..++..++.++...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999998887644 3677888889999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHC
Q 048751 767 AAEEMKLS 774 (1004)
Q Consensus 767 ~~~~~~~~ 774 (1004)
.++++.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-09 Score=129.49 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048751 571 ECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLING 650 (1004)
Q Consensus 571 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 650 (1004)
..+|+.+...+.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4567777777777777777777777777643 3446677777777777777777777777776653 2346777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048751 651 FAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEA 730 (1004)
Q Consensus 651 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 730 (1004)
|...|++++|++.|++.++... -+...|..+..++.+.|++++|++.|++..+.... +...+..++.+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 7777777777777777776543 35667777777777777777777777777765543 566677777777777777777
Q ss_pred HHHHHHHHHc
Q 048751 731 ESMFNDIREK 740 (1004)
Q Consensus 731 ~~~~~~~~~~ 740 (1004)
.+.++++.+.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.1e-09 Score=106.88 Aligned_cols=131 Identities=8% Similarity=-0.047 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLY 721 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (1004)
..+......+...|++++|++.|+...+....++...+..+..++...|++++|+..+++..+..+. +..++..+..+|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHH
Confidence 4444444444444444444444444444332234444444444444555555555555544443322 333444455555
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDA-------VSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
...|++++|+..|++..+..|.+. .+|..++..+...|++++|+..|+++++
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 555555555555555555554444 3345555555555555555555555554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=5e-09 Score=106.21 Aligned_cols=195 Identities=11% Similarity=0.053 Sum_probs=125.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|++.++...+... .+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 44566666666777777777777777766654225666666677777777777777777777776542 24456666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDT-------VASNTMISLYAELGMVTEAESMFNDIREKGQV--DAVSFAAMMYLY 755 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 755 (1004)
.+...|++++|...+++..+..+. +. ..|..+...+...|++++|+..|+++.+..|. +..+|..++.+|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 777777777777777777665432 33 34666777777888888888888888877777 677787777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
...|+ ..++++...+. .+...|.... ....+.+++|+..+++.++.
T Consensus 164 ~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 65543 33444444322 2333343332 23445677788888877653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.09 E-value=8.2e-10 Score=116.13 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------C
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEM------EG-GPDTVASNTMISLYAELGMVTEAESMFNDIREK--------G 741 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~ 741 (1004)
.++..+...+...|++++|...++++.+. +. .....++..+..+|...|++++|...|+++.+. .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555555554432 11 112335566666666667777777776666554 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 742 QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS------GLLRD-VISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 742 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+....++..++.+|...|++++|+..++++.+. +-.|+ ..++..+...+...|++++|..+++++++
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334556777777777777777777777777653 11232 45677777888888888888888887754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-09 Score=113.86 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=77.2
Q ss_pred cCCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc------CCCC-CHHHHHHHH
Q 048751 583 GGDLMGQAVDLLAEMQG-------AGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA------GVEP-NEVVYGSLI 648 (1004)
Q Consensus 583 ~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li 648 (1004)
..|++++|..++++.++ ...+....++..+...|...|++++|+..++++.+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44555555555555443 111223445556666666666666666666665542 1112 234555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHH
Q 048751 649 NGFAATGKVEEALQYFRMMRECG-----L--WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEM------EGGP-DTVAS 714 (1004)
Q Consensus 649 ~~~~~~g~~~~A~~~~~~m~~~g-----~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~ 714 (1004)
..|...|++++|++++++..+.. . +....++..+...+...|++++|...++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 66666666666666666554320 0 112334444555555555555555555554432 0011 12344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 715 NTMISLYAELGMVTEAESMFNDIRE 739 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~ 739 (1004)
..+..+|...|++++|...++++.+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=6.9e-09 Score=109.62 Aligned_cols=163 Identities=12% Similarity=-0.022 Sum_probs=99.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CC----HHHHHHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEM----EGGPD-TVASNTMISLYAELGMVTEAESMFNDIREKGQ--VD----AVSFAAMMY 753 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~ 753 (1004)
.|...|++++|...+.+..+. +..++ ..+|+.+..+|.+.|++++|+..|++..+..+ .+ ..++..++.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555666666555554432 11111 33566666667777777777777766655432 11 346777788
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh------hHHHH
Q 048751 754 LYKTM-GMLDEAIDAAEEMKLSGLLR-D----VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG------TFKVL 821 (1004)
Q Consensus 754 ~~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l 821 (1004)
+|... |++++|+..|++.++..... + ..++..+...+...|++++|+..|++..+........ .+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 88888888888877532100 1 3467778888888888888888888887653322211 34555
Q ss_pred HHHHHcCCCcHHHHHHHHhHhhccCC
Q 048751 822 FTILKKGGFPIEAVKQLQSSYQEVKP 847 (1004)
Q Consensus 822 ~~~~~~~g~~~~A~~~l~~~~~~~~~ 847 (1004)
..++...|+.++|+..++++++..|.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 66677777777777777776665443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-07 Score=96.63 Aligned_cols=236 Identities=11% Similarity=0.012 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----Hhc---CCHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELG--MVTEAESMFNDIREKGQVDAVSFAAMMYLY----KTM---GMLDE 763 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~~ 763 (1004)
++|+.+++.++..++. +..+|+.-..++...| +++++++.++.+...+|.+..+|+.-..++ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 4566666666554433 4445555555555555 666666666666666666666666655555 444 55666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhH
Q 048751 764 AIDAAEEMKLSGLLRDVISYNQVMACFATNGQLR--QCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSS 841 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 841 (1004)
++.+++++.+... .+..+|+.-...+.+.|.++ ++++++.++++... -|...+.....++.+.|..
T Consensus 129 EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~---------- 196 (306)
T 3dra_A 129 EFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHL---------- 196 (306)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGG----------
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc----------
Confidence 6666666665442 34556665555555666555 66666666654322 1222222222222222210
Q ss_pred hhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHH-HHHHHHHHHHCC-CCC-CH
Q 048751 842 YQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDK-ALNTFMKMLDQG-LEP-DI 918 (1004)
Q Consensus 842 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g-~~p-d~ 918 (1004)
.....++++++.+++++... |.|..+|+.+...+.+.|+... +.++.+++.+.+ ..| ++
T Consensus 197 -----------------~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 258 (306)
T 3dra_A 197 -----------------ATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS 258 (306)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred -----------------chhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH
Confidence 00012445566666666665 3466777777777777776444 334555554422 112 56
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc-HHHHHHHH
Q 048751 919 VTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN-ENLFKAVI 960 (1004)
Q Consensus 919 ~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 960 (1004)
..+..++.++.+.|+.++|.++++.+.. .++|- ...|+..+
T Consensus 259 ~al~~la~~~~~~~~~~~A~~~~~~l~~-~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 259 FALETLAKIYTQQKKYNESRTVYDLLKS-KYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh-ccChHHHHHHHHHH
Confidence 6677777777777777777777777643 13443 44554443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-07 Score=97.13 Aligned_cols=224 Identities=11% Similarity=0.087 Sum_probs=167.2
Q ss_pred HHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc-
Q 048751 722 AELGM-VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG--MLDEAIDAAEEMKLSGLLRDVISYNQVMACF----ATN- 793 (1004)
Q Consensus 722 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~- 793 (1004)
.+.|. .++|+.+++.++..+|.+..+|+.-..++...| ++++++..++.++..++ .+..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcc
Confidence 34444 578999999999999999999999999999999 99999999999998653 3456676655544 444
Q ss_pred --CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhH--hhhh
Q 048751 794 --GQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNA--LALG 869 (1004)
Q Consensus 794 --g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--~A~~ 869 (1004)
+++++++.+++++.+.. +-+...+..- +.++...+.++ ++++
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R---------------------------------~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYR---------------------------------KWLVDTFDLHNDAKELS 167 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHH---------------------------------HHHHHHTTCTTCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHH---------------------------------HHHHHHhcccChHHHHH
Confidence 56666666666665431 1122222222 23334445555 6777
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHhcCC------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh-hHHHHHH
Q 048751 870 TCETLIKAEAYLDSFIYNVAIYAFKSSGK------NDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLV-EGVKRIH 941 (1004)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~-~~A~~~~ 941 (1004)
.++++++.+ +.|..+|+.....+...|+ ++++++.+++++. ..| |...|..+...+.+.|+. +.+..++
T Consensus 168 ~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 168 FVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 888888876 4488899999999988887 9999999999998 567 788999999999998885 5577787
Q ss_pred HHHHcCC-CCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 048751 942 SQLKYGK-MEP-NENLFKAVIDAYRNANREDLADLACQEMRTAF 983 (1004)
Q Consensus 942 ~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 983 (1004)
+.+...+ ..| ++..+..++++|.+.|+.++|.++++++..+.
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY 288 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence 7765322 123 46788899999999999999999999987643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.9e-08 Score=101.17 Aligned_cols=207 Identities=14% Similarity=0.072 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVD---AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-RD-VISYNQ 785 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~ 785 (1004)
...+..+...+.+.|++++|+..|+++.+..|.+ ..++..++.+|...|++++|+..|+++++..+. |. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3444445555555555666666665555555544 555555555566666666666666555553211 11 234445
Q ss_pred HHHHHHH--------cCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHH
Q 048751 786 VMACFAT--------NGQLRQCGELLHEMLTQKLLPDNG-TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITS 856 (1004)
Q Consensus 786 l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 856 (1004)
+..++.. .|++++|+..|+++++. .|+.. ....+..... ....+. .....++.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~-------~~~~~~---------~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRE-------LRAKLA---------RKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHH-------HHHHHH---------HHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHH-------HHHHHH---------HHHHHHHH
Confidence 5555555 56666666666655543 22221 1111100000 000000 00123344
Q ss_pred HHHHHhhhHhhhhHHHHHHhhhccC--CchhHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCCH----HH
Q 048751 857 VYSVVGLNALALGTCETLIKAEAYL--DSFIYNVAIYAFKSS----------GKNDKALNTFMKMLDQGLEPDI----VT 920 (1004)
Q Consensus 857 l~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~pd~----~t 920 (1004)
++...|++++|+..++++++..+.. ...++..++.+|... |++++|+..|+++++ ..|+. .+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a 234 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDSPLLRTA 234 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTCTHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCChHHHHH
Confidence 5556666666666666666654321 234566667777655 777888888887776 34542 34
Q ss_pred HHHHHHHHHhcCChhHH
Q 048751 921 CINLVGCYGKAGLVEGV 937 (1004)
Q Consensus 921 ~~~l~~~~~~~g~~~~A 937 (1004)
...+..++.+.|+++++
T Consensus 235 ~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 235 EELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 45555555555555543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-07 Score=96.08 Aligned_cols=183 Identities=9% Similarity=0.008 Sum_probs=97.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 660 ALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG-GPDTVASNTMISLYAELGMVTEAESMFNDIR 738 (1004)
Q Consensus 660 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 738 (1004)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555566555443 24444555666666666777777777666655443 1244455566666777777777777777766
Q ss_pred HcCCC----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 048751 739 EKGQV----DAVSFAAMMYL--YKTMG--MLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ- 809 (1004)
Q Consensus 739 ~~~~~----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 809 (1004)
+..|. +..+...++.+ ....| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|...++.+.+.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 65441 12223333333 33333 6777777777765533 44333333333666777777777777655331
Q ss_pred ----C----CCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCC
Q 048751 810 ----K----LLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKP 847 (1004)
Q Consensus 810 ----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 847 (1004)
. -+-+..++..++......|+ +|.+++.+..+..|.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 0 02234444344444444454 455555555544443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-07 Score=96.66 Aligned_cols=78 Identities=8% Similarity=0.048 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 730 AESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR-DVISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 730 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
|+..|+++.+.++++..++..++.++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444443333333333444444444444444444444444333111 23344444444444555555555554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-06 Score=95.27 Aligned_cols=125 Identities=9% Similarity=0.039 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELG-MVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
.+|...+....+.++.+.|..+|+.+ .. ...+..+|...+..-...+ +.+.|+.+|+...+..|.++..|...+...
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45777777777788899999999988 32 2234455544343333334 699999999999998887888888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
...|+.+.|..+|+++. .....|...+..=...|+.+.+..++++++.
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999972 3567788888877888999999998888864
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-08 Score=104.62 Aligned_cols=206 Identities=14% Similarity=0.036 Sum_probs=143.3
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 048751 621 QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMREC----GLWAN-QIVLTSLIKAYSKIGCLEGA 695 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A 695 (1004)
++++|...|++. ...|...|++++|++.|++..+. |-.++ ..+|..+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 33566778888888888777543 21111 45778888888888888888
Q ss_pred HHHHHHHHhCCCCC-C----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHhcCCHHH
Q 048751 696 KQVYEKMKEMEGGP-D----TVASNTMISLYAEL-GMVTEAESMFNDIREKGQVD------AVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 696 ~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~ 763 (1004)
+..+++..+..... + ..+++.+..+|... |++++|+..|++..+..+.+ ..++..++..|...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 88888776532211 1 34678888999996 99999999999988765432 4578889999999999999
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHH--cCC
Q 048751 764 AIDAAEEMKLSGLLRDV------ISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNG------TFKVLFTILK--KGG 829 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g 829 (1004)
|+..|++..+....... ..|..+..++...|++++|...+++.++ +.|+.. .+..+..++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999986533221 2577788889999999999999999864 233322 2333444443 345
Q ss_pred CcHHHHHHHHhHhh
Q 048751 830 FPIEAVKQLQSSYQ 843 (1004)
Q Consensus 830 ~~~~A~~~l~~~~~ 843 (1004)
+..+|+..++++..
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 56666666655544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.1e-08 Score=96.33 Aligned_cols=123 Identities=10% Similarity=0.032 Sum_probs=68.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM- 760 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 760 (1004)
+..++.+.|++++|+..+++..+..+. +...+..+..++...|++++|+..|+++.+..|.+..+|..++.+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 555666666666666666666654433 555666666666666666666666666666666666666666666655443
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 761 -LDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 761 -~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
.+.+...++.... ..|....+.....++...|++++|...|++.+
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2333444444332 11222233334445555566666666666664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.1e-08 Score=101.07 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCC
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQV---DAVSFAAMMYLYKTM----------GMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 775 (1004)
..+...|.+.|++++|+..|+++.+..|. ...++..++.+|... |++++|+..++++.+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 44566667777777777777777766654 344666666666655 66677777777766643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-08 Score=97.90 Aligned_cols=180 Identities=9% Similarity=-0.002 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQI-VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
..+......+...|++++|+..|+...+.. |+.. .+.. ...... ........+.+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-----~~~~~~--------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW-----TNVDKN--------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH-----HHSCTT--------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH-----hhhcch--------------hhhhHHHHHHHHHH
Confidence 334444555666777777777777776642 2221 1111 000000 00112233458889
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQ--LRQ 798 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~ 798 (1004)
|.+.|++++|+..|++..+..|.+..++..++.+|...|++++|+..|+++++..+ .+..+|..+..+|...|+ ...
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998652 347788888888876654 334
Q ss_pred HHHHHHHHHHCCCCCChhh--HHHHHHHHHcCCCcHHHHHHHHhHhhccCC
Q 048751 799 CGELLHEMLTQKLLPDNGT--FKVLFTILKKGGFPIEAVKQLQSSYQEVKP 847 (1004)
Q Consensus 799 A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 847 (1004)
+...++... .|+... +.....++...|+.++|+..++++++..|.
T Consensus 143 ~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 143 LETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 455555442 343322 222333344455566666666666555543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-06 Score=95.24 Aligned_cols=125 Identities=6% Similarity=0.000 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG-MLDEAIDAAEEMKLSGLLRD-VISYNQVMAC 789 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 789 (1004)
.+|...+..+.+.++.+.|+.+|+++ ...+.....|...+..-...+ +.+.|..+|+...+.. |+ ...|...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46777777777888899999999999 333345566665555444444 6999999999998854 43 5556677777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhc
Q 048751 790 FATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQE 844 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 844 (1004)
....|+.+.|..+|+++. .....+...+.--...|+.+.+.+.++++...
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 788999999999999872 23445555555555678888888888877753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=9e-08 Score=87.08 Aligned_cols=125 Identities=23% Similarity=0.246 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 647 LINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM 726 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (1004)
+...+...|++++|..+++.+.+.+. .+...+..+...+...|++++|...++++..... .+...+..++..+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhcC
Confidence 33334444444444444444433221 2233333333334444444444444444333221 123333444444444444
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 727 VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+++|.+.++++.+..|.+...+..++.++...|++++|...++++.+
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 44444444444444444444444444444444444444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=8.7e-08 Score=87.20 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
.+..+...+...|++++|..+++++.+.... +...+..++..+...|++++|...++++....|.+...+..++.++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4556667777777888888877777665432 566677777777777788888888877777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 758 MGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
.|++++|+..++++.+... .+...+..++..+...|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7788888777777776542 3456667777777777777777777777654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-08 Score=119.66 Aligned_cols=173 Identities=10% Similarity=0.022 Sum_probs=123.6
Q ss_pred HHcCCHhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 617 ARLGQLSNAVDLFHEMR--------RAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSK 688 (1004)
Q Consensus 617 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 688 (1004)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|++.|+++.+... .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 56788888888888876 321 33466777777788888888888888887776543 456677777777788
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAA 768 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 768 (1004)
.|++++|...|+++.+..+. +...+..+..+|.+.|++++ ++.|+++.+.+|.+..+|..++.+|...|++++|+..|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888877775543 55667777777888888888 88888888877777778888888888888888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 048751 769 EEMKLSGLLRD-VISYNQVMACFATNGQ 795 (1004)
Q Consensus 769 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 795 (1004)
+++.+.+ |+ ...+..+..++...|+
T Consensus 558 ~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HhhcccC--cccHHHHHHHHHHHHccCC
Confidence 7777643 55 4566666666655444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.2e-07 Score=91.59 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 750 AMMYLYKTMGMLDEAIDAAEEMKLSGLLRD----VISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 750 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
.++..|.+.|++++|+..|+++++.. |+ ...+..+..++.+.|++++|.+.++.+...
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 45666777777777777777777643 33 245666777777777777777777776654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-08 Score=117.91 Aligned_cols=174 Identities=11% Similarity=-0.012 Sum_probs=112.1
Q ss_pred HcCCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048751 582 AGGDLMGQAVDLLAEMQ--------GAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAA 653 (1004)
Q Consensus 582 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 653 (1004)
...|++++|.+.+++.. +. .+.+...+..+...|.+.|++++|+..|++..+.+ +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777766 32 13445566666667777777777777777766543 3346666777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048751 654 TGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESM 733 (1004)
Q Consensus 654 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 733 (1004)
.|++++|++.|++..+... .+...+..+..++.+.|++++ .+.|+++.+.... +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777766542 345566666777777777777 7777776665443 555666677777777777777777
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 734 FNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
|+++.+..|.+..++..++.++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777776666666677666666655444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.9e-07 Score=92.71 Aligned_cols=207 Identities=10% Similarity=-0.021 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVE-PN-EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQ--IVLT 680 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~ 680 (1004)
+...+..+...+.+.|++++|+..|+++.+.... |. ...+..+..+|.+.|++++|+..|+.+.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556667777888888888888887764211 11 356677777888888888888888887765432111 1344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 681 SLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 681 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
.+..++...+.. .+ ..+..+...+...|++++|...|+++.+..|.+..++..+.......
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~-- 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK-- 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH--
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH--
Confidence 444444332210 00 01222333444567778888888888877776655543322211100
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHcCCCcHHHHH
Q 048751 761 LDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDN----GTFKVLFTILKKGGFPIEAVK 836 (1004)
Q Consensus 761 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~ 836 (1004)
..+. .....+...+.+.|++++|+..|+++++. .|+. ..+..+..++.+.|+.++|++
T Consensus 144 --------~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 144 --------DRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp --------HHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------HHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 0100 11234566778888888888888888764 3332 356677788888888888888
Q ss_pred HHHhHhhccCCc
Q 048751 837 QLQSSYQEVKPY 848 (1004)
Q Consensus 837 ~l~~~~~~~~~~ 848 (1004)
.++......|..
T Consensus 206 ~~~~l~~~~~~~ 217 (225)
T 2yhc_A 206 VAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHCCSCC
T ss_pred HHHHHHhhCCCc
Confidence 888777665544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.3e-08 Score=94.50 Aligned_cols=159 Identities=11% Similarity=0.045 Sum_probs=98.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHc
Q 048751 646 SLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL-YAEL 724 (1004)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 724 (1004)
.+...+...|++++|+..|+...+..+ .+...+..+...+...|++++|...++.+.+..+ +...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhh
Confidence 344455556666666666665544322 2445555666666666666666666665544332 33322222211 1122
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR-DVISYNQVMACFATNGQLRQCGELL 803 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 803 (1004)
+...+|+..+++..+..|.+...+..++.++...|++++|+..|+++++..+.+ +...+..+...+...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 233346777888888778888888888888888888888888888887755332 2457777778888888888888877
Q ss_pred HHHH
Q 048751 804 HEML 807 (1004)
Q Consensus 804 ~~~~ 807 (1004)
++.+
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=94.19 Aligned_cols=81 Identities=15% Similarity=0.041 Sum_probs=33.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
+...|.+.|++++|++.+++.++..+. +..+|..+..+|.+.|++++|+..|+++.+..|.++.+|..++.+|.+.|++
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence 333444444444444444444333222 3334444444444444444444444444444444444444444444444444
Q ss_pred HH
Q 048751 762 DE 763 (1004)
Q Consensus 762 ~~ 763 (1004)
++
T Consensus 116 ~~ 117 (150)
T 4ga2_A 116 DG 117 (150)
T ss_dssp SS
T ss_pred HH
Confidence 33
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-07 Score=98.89 Aligned_cols=167 Identities=13% Similarity=0.032 Sum_probs=124.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-H
Q 048751 638 EPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASN-T 716 (1004)
Q Consensus 638 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ 716 (1004)
+.+...+..+...+...|++++|+..|++..+..+ -+...+..+...+...|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 34456667777778888888888888888877643 456677788888888888888888888776644 3433322 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR-DVISYNQVMACFATNGQ 795 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 795 (1004)
....+.+.++.++|...+++..+..|.+...+..++.+|...|++++|+..++++++..... +...+..++..+...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 23346667778888888888888888888888888888888888888888888888865322 25678888888888888
Q ss_pred HHHHHHHHHHHH
Q 048751 796 LRQCGELLHEML 807 (1004)
Q Consensus 796 ~~~A~~~~~~~~ 807 (1004)
.++|...+++.+
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888888887754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-06 Score=92.08 Aligned_cols=224 Identities=14% Similarity=0.155 Sum_probs=145.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-CHHHH
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG-MLDEAIDAAEEMKLSGLLRDVISYNQVMACFATN-G-QLRQC 799 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-~~~~A 799 (1004)
+.+..++|+++++++...+|.+..+|+.-..++...| .+++++.+++.++...+ .+..+|+.-...+... + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHH
Confidence 3344567777777777777777777777777777777 47777777777777543 3456666666666555 5 66666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhh--------HhhhhHH
Q 048751 800 GELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLN--------ALALGTC 871 (1004)
Q Consensus 800 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~A~~~~ 871 (1004)
++++.++++.. +-+...+..-. .++...+.+ .++++.+
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~---------------------------------wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLH---------------------------------WLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHH---------------------------------HHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHH---------------------------------HHHHHhccccccchhhHHHHHHHH
Confidence 66666665321 11122221111 112222222 2677888
Q ss_pred HHHHhhhccCCchhHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh---------
Q 048751 872 ETLIKAEAYLDSFIYNVAIYAFKSSGK-------NDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLV--------- 934 (1004)
Q Consensus 872 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~--------- 934 (1004)
+++++.+ +.|..+|+.....+.+.|+ ++++++.+++++. ..| |...|..+-+.+.+.|+.
T Consensus 191 ~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~ 267 (349)
T 3q7a_A 191 NEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAIL 267 (349)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence 8888876 4488899999999888886 6899999998887 567 688888888888777664
Q ss_pred -----------hHHHHHHHHHHcCC----C-CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC
Q 048751 935 -----------EGVKRIHSQLKYGK----M-EPNENLFKAVIDAYRNANREDLADLACQEMRTAFE 984 (1004)
Q Consensus 935 -----------~~A~~~~~~~~~~~----~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 984 (1004)
.+...++..+.... . .+.+..+.-|+++|...|+.++|.++++.+..+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~d 333 (349)
T 3q7a_A 268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYD 333 (349)
T ss_dssp GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Confidence 33444444333211 1 23456778899999999999999999999876654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-07 Score=100.62 Aligned_cols=196 Identities=9% Similarity=-0.043 Sum_probs=114.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE-LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDA 767 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 767 (1004)
.|++++|.+++++..+.... .+.+ .+++++|...|.++ +..|...|++++|+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 46777888888776653221 1222 57788887777765 4577888999999999
Q ss_pred HHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--hhhHHHHHHHHHcCCCcHHHHHH
Q 048751 768 AEEMKLS----GLLRD-VISYNQVMACFATNGQLRQCGELLHEMLTQK--L-LPD--NGTFKVLFTILKKGGFPIEAVKQ 837 (1004)
Q Consensus 768 ~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~~~~~~g~~~~A~~~ 837 (1004)
+.+..+. +-.+. ..+|+.+...|...|++++|+..|++.++.- . .+. ..++..+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8887653 11111 4477888888888899999999888875421 0 111 2344555556656 777777777
Q ss_pred HHhHhhccCCch-------hhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCC-----chhHHHHHHHHHhcCChHHHHHH
Q 048751 838 LQSSYQEVKPYA-------SEAIITSVYSVVGLNALALGTCETLIKAEAYLD-----SFIYNVAIYAFKSSGKNDKALNT 905 (1004)
Q Consensus 838 l~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~ 905 (1004)
++++++..+... ....++.++...|++++|++.++++++..+..+ ..++..++.++...|++++|+..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 766665432210 011234445555555555555555555432211 12344444555555555555555
Q ss_pred HHHHH
Q 048751 906 FMKML 910 (1004)
Q Consensus 906 ~~~m~ 910 (1004)
|++.+
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-07 Score=99.01 Aligned_cols=167 Identities=8% Similarity=-0.011 Sum_probs=137.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-H
Q 048751 603 KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLT-S 681 (1004)
Q Consensus 603 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~ 681 (1004)
+.+...+..+...+.+.|++++|...|++..... +.+...+..+...+...|++++|...++.+.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4455667778888899999999999999988764 4467888999999999999999999999887754 4544332 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhcC
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD--AVSFAAMMYLYKTMG 759 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 759 (1004)
....+...++.++|...+++..+..+. +...+..+...+...|++++|+..|+++.+..|.+ ..++..++.++...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 333466778888899999998886654 77888899999999999999999999999998876 889999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 048751 760 MLDEAIDAAEEMKL 773 (1004)
Q Consensus 760 ~~~~A~~~~~~~~~ 773 (1004)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999998887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-08 Score=93.02 Aligned_cols=144 Identities=7% Similarity=-0.036 Sum_probs=110.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPN-EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGC 691 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 691 (1004)
...+...|++++|+..++..... .|+ ...+..+...|.+.|++++|++.|++.++..+ -+..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence 34455667888888888777643 232 44566778888888899999998888887653 467788888888899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 692 LEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESM-FNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
+++|+..|++..+..+. +..++..+..+|.+.|++++|.+. ++++.+..|.++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999988876544 677888888899999998776654 588888889899888888888877764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.8e-07 Score=90.76 Aligned_cols=161 Identities=12% Similarity=0.047 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIG----CLEGAKQVYEKMKEMEGGPDTVASN 715 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~ 715 (1004)
+...+..|...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.+.|++..+.+ +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33444444444444444444444444444432 23333334433333 3 4444444444444322 333444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 716 TMISLYAE----LGMVTEAESMFNDIREKGQV--DAVSFAAMMYLYKT----MGMLDEAIDAAEEMKLSGLLRDVISYNQ 785 (1004)
Q Consensus 716 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 785 (1004)
.|...|.. .+++++|..+|++..+.++. ++.++..|..+|.. .+++++|+.+|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 44444443 44455555555555444431 24444555555554 445555555555554431 22334444
Q ss_pred HHHHHHHc-C-----CHHHHHHHHHHHHHC
Q 048751 786 VMACFATN-G-----QLRQCGELLHEMLTQ 809 (1004)
Q Consensus 786 l~~~~~~~-g-----~~~~A~~~~~~~~~~ 809 (1004)
|...|... | ++++|..+|++..+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 44444332 1 455555555554443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.6e-07 Score=88.57 Aligned_cols=177 Identities=11% Similarity=0.012 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 048751 589 QAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG----KVEEALQYF 664 (1004)
Q Consensus 589 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~ 664 (1004)
+|.+.|.+..+.| +...+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666643 56677777777777888888888888887754 56677777777776 5 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 048751 665 RMMRECGLWANQIVLTSLIKAYSK----IGCLEGAKQVYEKMKEMEGG-PDTVASNTMISLYAE----LGMVTEAESMFN 735 (1004)
Q Consensus 665 ~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 735 (1004)
++..+.| +...+..|...|.. .+++++|.+.+++..+.+.. .+...+..|..+|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887764 55667777777766 77888888888888776532 126677778888887 778889999998
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCC
Q 048751 736 DIREKGQVDAVSFAAMMYLYKTM-G-----MLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 776 (1004)
+..+. +.++.++..|..+|... | ++++|+.+|++..+.|.
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88877 44556777888887653 3 78899999888888764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=4.4e-07 Score=106.04 Aligned_cols=154 Identities=8% Similarity=-0.020 Sum_probs=105.4
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048751 619 LGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQV 698 (1004)
Q Consensus 619 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 698 (1004)
.|++++|+..|++..+.. +.+...|..+...|...|++++|++.+++..+... .+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888776642 33477788888888888888888888888877643 4567777788888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 048751 699 YEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM---GMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 775 (1004)
+++..+.... +...+..+..+|.+.|++++|.+.|+++.+..|.+..++..++.++... |++++|...+++..+.+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8887775543 5667777888888888888888888888888887888888888888888 88888888888887755
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.7e-07 Score=86.50 Aligned_cols=163 Identities=9% Similarity=-0.018 Sum_probs=108.0
Q ss_pred CcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHH-
Q 048751 467 HSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKA- 545 (1004)
Q Consensus 467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~- 545 (1004)
..+......+...|++++|...+++++...|.+..++..++.++...|++++|+..|+.+... .|+...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 345667777888899999999999888888888899999999999999999999999888763 2244333322211
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHhH
Q 048751 546 YGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKP-QCLTFSSVIAAYARLGQLSN 624 (1004)
Q Consensus 546 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~ 624 (1004)
+...+...+|+..+++..+..+. +...+..+...+...|++++|...|+.+++....+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 11222333466667666664322 45666666666777777777777777766643211 24456666666777777777
Q ss_pred HHHHHHHHH
Q 048751 625 AVDLFHEMR 633 (1004)
Q Consensus 625 A~~~~~~m~ 633 (1004)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.7e-07 Score=105.78 Aligned_cols=165 Identities=10% Similarity=0.012 Sum_probs=126.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048751 584 GDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQY 663 (1004)
Q Consensus 584 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 663 (1004)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|...|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988753 4567888999999999999999999999998764 44588899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHc
Q 048751 664 FRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL---GMVTEAESMFNDIREK 740 (1004)
Q Consensus 664 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 740 (1004)
+++..+... .+...+..+...+.+.|++++|.+.+++..+.... +...+..+..++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999988753 46788999999999999999999999999886543 677888899999999 9999999999999999
Q ss_pred CCCCHHHHHHHH
Q 048751 741 GQVDAVSFAAMM 752 (1004)
Q Consensus 741 ~~~~~~~~~~l~ 752 (1004)
+|.+...+..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 988777766555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-06 Score=93.53 Aligned_cols=197 Identities=13% Similarity=0.054 Sum_probs=134.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 584 GDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYAR-LGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQ 662 (1004)
Q Consensus 584 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 662 (1004)
.|++++|.+++++..+.. +.. +.+ .++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 467778888888776531 111 111 46777777777654 345777888888888
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHHcCCHHHHHH
Q 048751 663 YFRMMRECGLW-AN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG---GPD--TVASNTMISLYAELGMVTEAES 732 (1004)
Q Consensus 663 ~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~ 732 (1004)
.|.+..+.... .+ ..+|..+...|...|++++|+..+++..+... .+. ..+++.+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88877542110 01 34677788888888888888888887654311 111 3466777788877 89999999
Q ss_pred HHHHHHHcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 048751 733 MFNDIREKGQV------DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS----GLLRD-VISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 733 ~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
.|++..+..+. ...++..++.+|...|++++|+..|++..+. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98888765432 1457788888888999999999888888763 11111 2356666777777888888888
Q ss_pred HHHHHH
Q 048751 802 LLHEML 807 (1004)
Q Consensus 802 ~~~~~~ 807 (1004)
.|++.+
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888886
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-06 Score=85.04 Aligned_cols=128 Identities=17% Similarity=0.107 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
.+..+...+...|++++|...+++.. .|+..++..+..+|.+.|++++|+..|++..+..|.+..+|..++.+|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34455666777788888888877663 45677788888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 758 MGMLDEAIDAAEEMKLSGLL--------------RD-VISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~~~~~--------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
.|++++|+..++++.+.... |+ ...+..+..++...|++++|...+++.++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888888774321 11 267777888888888888888888888754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-05 Score=84.29 Aligned_cols=257 Identities=9% Similarity=0.059 Sum_probs=168.1
Q ss_pred HHHHHHHH---HHHcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCC
Q 048751 678 VLTSLIKA---YSKIGCLE-GAKQVYEKMKEMEGGPDTVASNTMISLYAELGM----------VTEAESMFNDIREKGQV 743 (1004)
Q Consensus 678 ~~~~li~~---~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~ 743 (1004)
.|..+... ..+.|.++ +|+.+++.+...++. +..+|+.--.++...+. +++++.+++.+...+|.
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK 106 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 106 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence 44444443 34566654 788888888876654 55566655555544443 67888888888888888
Q ss_pred CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCChhhHHH
Q 048751 744 DAVSFAAMMYLYKTMGM--LDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQ-LRQCGELLHEMLTQKLLPDNGTFKV 820 (1004)
Q Consensus 744 ~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ 820 (1004)
+..+|+.-..++...|+ +++++.+++++.+... .|..+|+.-...+...|. ++++++.+.++++... -|...+..
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~ 184 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHY 184 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHH
Confidence 88888888888888884 8888888888888654 567788877777777787 5888888888876532 23333433
Q ss_pred HHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhc----
Q 048751 821 LFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSS---- 896 (1004)
Q Consensus 821 l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 896 (1004)
...++.+.+....+ ++. .-...+.++++++.+++++... |.|..+|+.+-..+.+.
T Consensus 185 R~~ll~~l~~~~~~-----------~~~--------~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 185 RSCLLPQLHPQPDS-----------GPQ--------GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHSCCC-------------------------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHhhhcccc-----------ccc--------cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcc
Confidence 33333222110000 000 0001245677888888888886 55888998887777766
Q ss_pred -------CChHHHHHHHHHHHHCCCCCC-HHHHHHHHH---HHHhcCChhHHHHHHHHHHcCCCCCc-HHHHHHHHH
Q 048751 897 -------GKNDKALNTFMKMLDQGLEPD-IVTCINLVG---CYGKAGLVEGVKRIHSQLKYGKMEPN-ENLFKAVID 961 (1004)
Q Consensus 897 -------g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 961 (1004)
+.++++++.++++++ ..|| ..++..++. .....|..+++..++.++. .++|. ..-|..+..
T Consensus 245 ~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK--AVDPMRAAYLDDLRS 317 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH--HHCGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH--HhCcchhhHHHHHHH
Confidence 458899999999998 6785 444443332 2224677788888888886 35665 345555543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=7.2e-06 Score=86.21 Aligned_cols=223 Identities=11% Similarity=0.010 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELG-MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM-G-MLDEAIDAAE 769 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~~~~ 769 (1004)
++|+++++.++..++. +..+|+.-..++...| .+++++..++.+...+|.+..+|+.-..++... + ++++++.+++
T Consensus 71 e~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4555555555554433 4444555555555555 366666666666666666666666665555555 5 5566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhH
Q 048751 770 EMKLSGLLRDVISYNQVMACFATNGQLR--------QCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSS 841 (1004)
Q Consensus 770 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 841 (1004)
++++... .|..+|+.-...+.+.|.++ ++++++.++++... -|...+.....++.+.+....
T Consensus 150 k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~-------- 219 (349)
T 3q7a_A 150 GSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAET-------- 219 (349)
T ss_dssp HHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCC--------
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccccc--------
Confidence 6655432 34455554444444444333 45555555544321 122222222222222221000
Q ss_pred hhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCCh--------------------HH
Q 048751 842 YQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKN--------------------DK 901 (1004)
Q Consensus 842 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~ 901 (1004)
....++++++.+++++... |.|..+|+.+-..+.+.|+. .+
T Consensus 220 ------------------~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (349)
T 3q7a_A 220 ------------------SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIET 280 (349)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---------
T ss_pred ------------------chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchh
Confidence 0011234455555555544 33555666555555555543 22
Q ss_pred HHHHHHHHHHCC----C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 902 ALNTFMKMLDQG----L-EPDIVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 902 A~~~~~~m~~~g----~-~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
..+....+...+ . .+.+..+..|+++|...|+.++|.++++.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 281 VEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp -----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222222222211 1 2355666667777777777777777776664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.60 E-value=9.3e-07 Score=79.29 Aligned_cols=96 Identities=11% Similarity=-0.018 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
.+......+.+.|++++|++.|++.++..+. +..+|..+..+|.+.|++++|+..|++..+.+|.+..+|..++.+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3444455555555555555555555554332 455555555666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 048751 758 MGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~~ 774 (1004)
.|++++|+..|++.++.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 66666666666666553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-06 Score=78.16 Aligned_cols=95 Identities=12% Similarity=0.158 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFAT 792 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 792 (1004)
.+...+..|.+.|++++|++.|++..+..|.+..+|..++.+|...|++++|+..+++.++.+. .+...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 4555666666677777777777776666666666777777777777777777777766666432 235566666666677
Q ss_pred cCCHHHHHHHHHHHHH
Q 048751 793 NGQLRQCGELLHEMLT 808 (1004)
Q Consensus 793 ~g~~~~A~~~~~~~~~ 808 (1004)
.|++++|+..|++.++
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777777766654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-05 Score=84.83 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-H
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKG-------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS----GLLRD-V 780 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~ 780 (1004)
+++.++.+|...|++++|...|+++.+.. +....++..++.+|.+.|++++|+..+++.++. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 34555555555555555555555554211 112235566666666666666666666655431 11122 4
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 048751 781 ISYNQVMACFATNG-QLRQCGELLHEML 807 (1004)
Q Consensus 781 ~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 807 (1004)
.+|..+..++.+.| .+++|...+++..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 56666667777777 3577777776664
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=6.7e-07 Score=93.45 Aligned_cols=98 Identities=10% Similarity=-0.001 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
+...+..++..+.+.|++++|+..|+++.+..|.+...|..++.+|...|++++|+..++++++... .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445556666666777777777777777776666777777777777777777777777777666431 235566666667
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 048751 790 FATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~ 808 (1004)
+...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=3e-06 Score=84.34 Aligned_cols=127 Identities=10% Similarity=-0.016 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048751 644 YGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE 723 (1004)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 723 (1004)
+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...+++..+... .+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 4455666777777777777777663 35667777777777788888888888877776543 366677788888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 724 LGMVTEAESMFNDIREKGQVDA----------------VSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 724 ~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
.|++++|...|+++.+..|.+. .++..++.+|...|++++|+..++++.+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888665544 888999999999999999999999998855
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-06 Score=80.46 Aligned_cols=127 Identities=12% Similarity=-0.011 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
.+..+...+...|++++|...+++..+.... +..++..++.++...|++++|...+++..+..|.+..+|..++.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4555556666667777777777766654332 556666777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHH
Q 048751 758 MGMLDEAIDAAEEMKLSGLLRDVISY--NQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
.|++++|+..++++.+... .+...+ ...+..+...|++++|+..+.+.
T Consensus 94 ~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777776442 233333 22333356667777777776655
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.54 E-value=8e-06 Score=86.00 Aligned_cols=162 Identities=12% Similarity=-0.016 Sum_probs=104.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAV------SFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-RD----VISYNQ 785 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~ 785 (1004)
.+..+...|++++|..++++..+..+.+.. .+..++..+...|++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677778888888888887775543322 2334666777777888888888888873222 22 236788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHH
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQ-----KLLPD-NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYS 859 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~ 859 (1004)
+...|...|++++|+.+++++++. +..+. ..++..+...|.+.|+.++|+.++++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~------------------- 221 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK------------------- 221 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------------
Confidence 888888888888888888887631 11111 11334444445555555555554444
Q ss_pred HHhhhHhhhhHHHHHHhhhccC-----CchhHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 048751 860 VVGLNALALGTCETLIKAEAYL-----DSFIYNVAIYAFKSSGK-NDKALNTFMKMLD 911 (1004)
Q Consensus 860 ~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 911 (1004)
+++..... -..+|..++.+|...|+ +++|++.|+++++
T Consensus 222 --------------al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 222 --------------AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp --------------HHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 43332111 14578889999999995 6999999998874
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.53 E-value=1e-05 Score=85.19 Aligned_cols=163 Identities=9% Similarity=-0.037 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--H
Q 048751 643 VYGSLINGFAATGKVEEALQYFRMMRECGLWANQ------IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG---GPD--T 711 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~ 711 (1004)
.+...+..+...|++++|.+.++...+.... .. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3344555666677777777777666654321 11 1122344445566677777777766654321 111 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIRE---KGQVD----AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG----LLRD- 779 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~- 779 (1004)
.+++.++..|...|++++|...|+++.+ ..+.+ ..++..++.+|...|++++|+..+++.++.. ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3566667777777777777777777662 22322 1466666777777777777777766665421 1011
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 048751 780 VISYNQVMACFATNGQLRQC-GELLHEM 806 (1004)
Q Consensus 780 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 806 (1004)
..+|..+..+|...|++++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44566666666666666666 5555554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.4e-07 Score=90.45 Aligned_cols=199 Identities=9% Similarity=-0.040 Sum_probs=126.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAM-------MYLYKTMGMLDEAIDAAEEMKLSGLLRD---------------- 779 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------- 779 (1004)
..++...|++.|.++.+..|.....|..+ ...+...++..+++..+.+..+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57888999999999999988888888888 5777777777777766666554 1121
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhH
Q 048751 780 ------VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAI 853 (1004)
Q Consensus 780 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 853 (1004)
...+..+...+...|++++|.++|..+... .|+......+...+.+.|++++|+..++.......+..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~---- 169 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL---- 169 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH----
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc----
Confidence 123445667788888999998888877543 34443444444556677777777776654432211100
Q ss_pred HHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 048751 854 ITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD--IVTCINLVGCYGKA 931 (1004)
Q Consensus 854 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~l~~~~~~~ 931 (1004)
...++..++.++...|++++|+..|++.......|. .........++.+.
T Consensus 170 ----------------------------~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l 221 (282)
T 4f3v_A 170 ----------------------------AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ 221 (282)
T ss_dssp ----------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc
Confidence 122566667777777777777777777764322253 33555666667777
Q ss_pred CChhHHHHHHHHHHcCCCCCcHHHHHHH
Q 048751 932 GLVEGVKRIHSQLKYGKMEPNENLFKAV 959 (1004)
Q Consensus 932 g~~~~A~~~~~~~~~~~~~p~~~~~~~l 959 (1004)
|+.++|..+++++.. ..|+..++..|
T Consensus 222 Gr~deA~~~l~~a~a--~~P~~~~~~aL 247 (282)
T 4f3v_A 222 GNESAAVALLEWLQT--THPEPKVAAAL 247 (282)
T ss_dssp TCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--cCCcHHHHHHH
Confidence 777777777777653 34554444444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-06 Score=80.49 Aligned_cols=103 Identities=13% Similarity=0.052 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
+...+..+...+.+.|++++|+..|+++....|.++..|..++.+|...|++++|+..|+++.+..+ .++..|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHH
Confidence 3446677788888889999999999998888888888888888899999999999999888888552 246788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCh
Q 048751 790 FATNGQLRQCGELLHEMLTQKLLPDN 815 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~~~~p~~ 815 (1004)
|...|++++|...|++.++. .|+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 88889999998888888764 3554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-06 Score=79.72 Aligned_cols=103 Identities=11% Similarity=-0.021 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
...+..+...+.+.|++++|...|+++.+..+. +...|..+..+|...|++++|+..|+++.+..|.++.+|..++.+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 346777778888999999999999998886654 7888889999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDVI 781 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~~ 781 (1004)
...|++++|+..|++.++.. |+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999999854 6644
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=6.9e-07 Score=93.37 Aligned_cols=99 Identities=12% Similarity=-0.085 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 675 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
+...+..+...+...|++++|...++++.+.... +...|..+..+|.+.|++++|+..++++.+..|.+..++..++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4456667777778888888888888887775433 677778888888888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 048751 755 YKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~ 774 (1004)
|...|++++|+..|++..+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888887764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.4e-06 Score=79.07 Aligned_cols=130 Identities=14% Similarity=0.088 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLY 721 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (1004)
..+..+...+...|++++|...|+...+... .+..++..+...+...|++++|...+++..+... .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 4456667777777888888888887776543 4567777777888888888888888888777543 3667788888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMM--YLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
...|++++|...|+++.+..|.+...+..+. ..+...|++++|+..+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8889999999999988888888777774444 447778888888888876643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=9.8e-05 Score=77.27 Aligned_cols=251 Identities=10% Similarity=0.084 Sum_probs=167.8
Q ss_pred HHHHHHHHHHH---HhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCC
Q 048751 641 EVVYGSLINGF---AATGKV-EEALQYFRMMRECGLWANQIVLTSLIKAYSKIGC----------LEGAKQVYEKMKEME 706 (1004)
Q Consensus 641 ~~~~~~li~~~---~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~ 706 (1004)
+..|..+...+ .+.|.+ ++|+.++..+...++ -+..+|+.--..+...+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 44555554433 345554 589999999998653 345556665555444443 678999999998866
Q ss_pred CCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHH
Q 048751 707 GGPDTVASNTMISLYAELGM--VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM-LDEAIDAAEEMKLSGLLRDVISY 783 (1004)
Q Consensus 707 ~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~ 783 (1004)
++ +..+|+.-..++.+.|. +++++.+++++.+.+|.|..+|+.-..++...|. ++++++.++++++..+ -|...|
T Consensus 105 PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW 182 (331)
T 3dss_A 105 PK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSW 182 (331)
T ss_dssp TT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHH
T ss_pred CC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHH
Confidence 55 78888888888888884 8999999999999999999999999999999998 6999999999999764 567888
Q ss_pred HHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHcC-CCcHHHHHHHHhHhhccCC
Q 048751 784 NQVMACFATN--------------GQLRQCGELLHEMLTQKLLPD-NGTFKVLFTILKKG-GFPIEAVKQLQSSYQEVKP 847 (1004)
Q Consensus 784 ~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~~~~~ 847 (1004)
+.....+... +.++++++++.+.+.. .|+ ...+..+-..+.+. |. +
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~----------------~ 244 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGR----------------C 244 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCG----------------G
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCc----------------c
Confidence 8777766655 3355555555555432 222 22222121112111 00 0
Q ss_pred chhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHH-----HhcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 048751 848 YASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAF-----KSSGKNDKALNTFMKMLDQGLEPD-IVTC 921 (1004)
Q Consensus 848 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~m~~~g~~pd-~~t~ 921 (1004)
. .. ....+.++++++.++++++..|. + .|+.+..++ ...|..+++...+.++.+ +.|. .--|
T Consensus 245 ~-----~~--~~~~~~l~~el~~~~elle~~pd-~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y 312 (331)
T 3dss_A 245 E-----LS--VEKSTVLQSELESCKELQELEPE-N--KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYL 312 (331)
T ss_dssp G-----CC--HHHHHHHHHHHHHHHHHHHHCTT-C--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHH
T ss_pred c-----cc--hHHHHHHHHHHHHHHHHHhhCcc-c--chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHH
Confidence 0 00 12235677889999999988642 3 454433322 245778889999999987 6773 3334
Q ss_pred HHH
Q 048751 922 INL 924 (1004)
Q Consensus 922 ~~l 924 (1004)
.-+
T Consensus 313 ~d~ 315 (331)
T 3dss_A 313 DDL 315 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.44 E-value=7.6e-06 Score=72.78 Aligned_cols=94 Identities=23% Similarity=0.221 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
+..+...+...|++++|.+.++++.+... .+..++..++..+...|++++|...++++.+..|.+..++..++.++...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 33333344444444444444444433221 13333444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 048751 759 GMLDEAIDAAEEMKL 773 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~ 773 (1004)
|++++|...++++.+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-06 Score=85.05 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--C
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKG------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS----GLLR--D 779 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p--~ 779 (1004)
.++..+...+...|++++|...+++..+.. +....++..++..|...|++++|+..+++..+. +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 344444444444444444444444444311 122334444455555555555555555444331 1011 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 780 VISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 780 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
...+..+...+...|++++|...+++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 223444455555555555555555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-06 Score=75.42 Aligned_cols=116 Identities=9% Similarity=0.004 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
...+..+...+...|++++|...+++..+.... +..++..+..++...|++++|+..++++.+..|.+...+..++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 344555555566666666666666665554322 4555556666666666666666666666666666666666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 756 KTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATN 793 (1004)
Q Consensus 756 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 793 (1004)
...|++++|+..+++..+... .+...+..+..++...
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHh
Confidence 666666666666666665331 1234444444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-06 Score=88.53 Aligned_cols=211 Identities=11% Similarity=-0.007 Sum_probs=140.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048751 754 LYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQV-------MACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTIL 825 (1004)
Q Consensus 754 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 825 (1004)
++ ..++...|.+.|.++.+.. |+ ...|..+ ...+...++..+++..+++.+ ++.|+......-
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~---- 86 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIA---- 86 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEE----
T ss_pred cc-cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhc----
Confidence 44 5789999999999999855 65 6788877 566666666666666555543 333332110000
Q ss_pred HcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHH
Q 048751 826 KKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNT 905 (1004)
Q Consensus 826 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 905 (1004)
..|-+.+ --+.-.........+..++...|++++|.+.++.+...+ |.+. ....++..+.+.|+|++|+..
T Consensus 87 -~~g~y~~------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 87 -IGGLYGD------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp -CCTTTCC------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred -cCCcccc------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHH
Confidence 0000000 000000000112233455666777777777777666554 2234 777788899999999999999
Q ss_pred HHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 906 FMKMLDQGLEPD----IVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN--ENLFKAVIDAYRNANREDLADLACQEM 979 (1004)
Q Consensus 906 ~~~m~~~g~~pd----~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 979 (1004)
|+.... .|+ ...+..+..++...|++++|...+++....+..|. ...+...+.++.+.|+.++|..+++++
T Consensus 158 l~~a~~---~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 158 VKSAGK---WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HTTGGG---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhhc---cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 986654 233 34788889999999999999999999875554465 457788899999999999999999999
Q ss_pred HhhcCC
Q 048751 980 RTAFES 985 (1004)
Q Consensus 980 ~~~~~~ 985 (1004)
....+.
T Consensus 235 ~a~~P~ 240 (282)
T 4f3v_A 235 QTTHPE 240 (282)
T ss_dssp HHHSCC
T ss_pred HhcCCc
Confidence 876543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-05 Score=82.98 Aligned_cols=166 Identities=7% Similarity=-0.073 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----C--HH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDT-----VASNTMISLYAELGMVTEAESMFNDIREKGQV----D--AV 746 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~--~~ 746 (1004)
.+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|...+++..+..+. . ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4555677888999999999999988775443211 22345666778889999999999998865422 1 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---HCCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC-h
Q 048751 747 SFAAMMYLYKTMGMLDEAIDAAEEMK---LSGL-LRD--VISYNQVMACFATNGQLRQCGELLHEMLTQK----LLPD-N 815 (1004)
Q Consensus 747 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~ 815 (1004)
+|+.++..|...|++++|+..++++. +... .+. ..++..+...|...|++++|+.++++.++.. .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 88999999999999999999999987 3221 111 2588889999999999999999999985431 1111 4
Q ss_pred hhHHHHHHHHHcCCCcHHH-HHHHHhHhh
Q 048751 816 GTFKVLFTILKKGGFPIEA-VKQLQSSYQ 843 (1004)
Q Consensus 816 ~~~~~l~~~~~~~g~~~~A-~~~l~~~~~ 843 (1004)
.++..+..++.+.|+.++| ..++++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4667777788888888888 666776553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=5.1e-06 Score=74.72 Aligned_cols=114 Identities=13% Similarity=0.034 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
+..+...+...|++++|...++++..... .+...+..+..++...|++++|...++++.+..|.+...+..++.++...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 33444444444444444444444443322 13444444455555555555555555555555444555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048751 759 GMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNG 794 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 794 (1004)
|++++|+..+++..+... .+...+..+..++...|
T Consensus 94 ~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 94 NKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLR 128 (131)
T ss_dssp TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence 555555555555544321 12334444444444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-06 Score=80.98 Aligned_cols=98 Identities=14% Similarity=0.099 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
+...+..+...+.+.|++++|+..|+++....|.+...|..++.+|...|++++|+..|+++..... .+...+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3445566677777778888888888877777777777777777777788888888888777777542 235667777777
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 048751 790 FATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~ 808 (1004)
+...|++++|...|++.++
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-05 Score=71.88 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 641 EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
...|..+...+...|++++|.++++++.+... .+..++..+...+...|++++|...++++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 45566666777777777777777777766532 3566677777777777777777777777766543 356677778888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG 759 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 759 (1004)
+...|++++|...|+++.+..|.+...+..+..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888888888888877777777665543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.5e-06 Score=81.00 Aligned_cols=120 Identities=8% Similarity=0.007 Sum_probs=75.9
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 048751 688 KIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL-YKTMGML--DEA 764 (1004)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 764 (1004)
..|++++|...++...+... .+...+..+..+|...|++++|...|+++.+..|.+...+..++.+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34566666666666655443 2556666666777777777777777777776666666677777766 6666776 777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 765 IDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 765 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+..++++.+... .+...+..+...+...|++++|...++++++.
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777766442 23556666666777777777777777776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.40 E-value=6.1e-06 Score=88.61 Aligned_cols=145 Identities=10% Similarity=0.020 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 641 EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
...+..+...|.+.|++++|+..|++..+....... + ..+.+.++-. ....+|..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~~~~--------~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--F-----------SNEEAQKAQA--------LRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--C-----------CSHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc--C-----------ChHHHHHHHH--------HHHHHHHHHHHH
Confidence 455666666666666777776666666654321110 0 0011111000 014567777888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH-
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQC- 799 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A- 799 (1004)
|.+.|++++|+..|+++.+..|.+..+|..++.+|...|++++|+..|+++++... .+...+..+..++...|++++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888887542 2466777777788888888777
Q ss_pred HHHHHHHH
Q 048751 800 GELLHEML 807 (1004)
Q Consensus 800 ~~~~~~~~ 807 (1004)
...++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44566653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-06 Score=79.69 Aligned_cols=100 Identities=14% Similarity=-0.064 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 675 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
+...+..+...+...|++++|...|+.+....+. +...|..+..+|...|++++|+..|+++....|.++.++..++.+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3445667777888889999999999988876543 777888888999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 048751 755 YKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
|...|++++|+..|++.++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999988743
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.9e-06 Score=74.70 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL--LRD----VISYNQ 785 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 785 (1004)
.++..++..+.+.|++++|+..|+++.+..|.+..+|..++.+|...|++++|+..+++.++... .++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35667888888999999999999999998888999999999999999999999999988876421 111 246777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQKLLPDNGTFK 819 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 819 (1004)
+..++...|++++|++.|++.+.. .|++.+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 888888899999999999888753 45655443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=7.4e-06 Score=73.61 Aligned_cols=119 Identities=18% Similarity=0.110 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 641 EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
...+..+...+...|++++|+..++....... .+...+..+...+...|++++|...++...+.... +...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 45566677777777888888888877776532 45667777777888888888888888887765433 56777888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
+...|++++|...|+++.+..|.+...+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888999999999888888888888888888888877764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.4e-06 Score=82.17 Aligned_cols=121 Identities=10% Similarity=0.051 Sum_probs=86.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 048751 653 ATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL-YAELGMV--TE 729 (1004)
Q Consensus 653 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 729 (1004)
..|++++|+..++...+... .+...+..+...+...|++++|...++++.+.... +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 45666667777776665532 45566777777777777777777777777665433 56666677777 6677887 88
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 730 AESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 730 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
|...|+++.+..|.+..++..++.+|...|++++|+..++++.+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888888888888888888888888888888888888888754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.4e-06 Score=84.16 Aligned_cols=162 Identities=14% Similarity=0.036 Sum_probs=104.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS----GLLR-DVISYNQVMACFATNGQL 796 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 796 (1004)
...|++++|.+.++.+.........++..++..+...|++++|+..+++..+. +..+ ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788999998666554433356778999999999999999999999888762 2212 245778888899999999
Q ss_pred HHHHHHHHHHHHCC-CCC-C----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhH
Q 048751 797 RQCGELLHEMLTQK-LLP-D----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGT 870 (1004)
Q Consensus 797 ~~A~~~~~~~~~~~-~~p-~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~ 870 (1004)
++|...+++.++.. -.+ + ...+..+...+...|++++|...+++++...+...
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------- 141 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--------------------- 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc---------------------
Confidence 99999998875420 011 1 12234444455555555555555554432110000
Q ss_pred HHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 871 CETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
....-..++..++.++...|++++|.+.+++..+
T Consensus 142 -------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 142 -------DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 0000123467888999999999999999988875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.4e-06 Score=74.41 Aligned_cols=119 Identities=8% Similarity=-0.020 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1004)
+...|..+...+...|++++|+..|++..+... .+...+..+...+...|++++|...++++.+.... +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 355666666667777777777777777666432 35566666777777777777777777777665432 5667777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 720 LYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
++.+.|++++|...|++..+..|.+...+..+..++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888777777777777777766553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.36 E-value=7.3e-06 Score=88.01 Aligned_cols=146 Identities=11% Similarity=0.011 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
+...+..+...|.+.|++++|+..|++..... |+...+ ..+.+.++- . .....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~-------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-A-------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-H-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-H-------HHHHHHHHHHH
Confidence 56678889999999999999999999998753 321000 001111110 0 11345666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA 764 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 764 (1004)
++.+.|++++|+..++++++.... +..++..+..+|...|++++|+..|+++.+..|.+..++..+..++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777775543 6677788888888888888888888888888888888888888888888888887
Q ss_pred -HHHHHHHH
Q 048751 765 -IDAAEEMK 772 (1004)
Q Consensus 765 -~~~~~~~~ 772 (1004)
...+++|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 34555554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-05 Score=72.46 Aligned_cols=94 Identities=15% Similarity=0.042 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
+..+...+.+.|++++|+..|++..+..+. +...|..+..++.+.|++++|+..|+++.+..|.+..+|..++.++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 344444444555555555555554443322 3444555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 048751 759 GMLDEAIDAAEEMKL 773 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~ 773 (1004)
|++++|+..|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-06 Score=85.56 Aligned_cols=127 Identities=10% Similarity=0.041 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD---------------TVASNTMISLYAELGMVTEAESMFNDIREKGQV 743 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 743 (1004)
+..+...+...|++++|...+++..+...... ..++..+..+|.+.|++++|+..++++.+..|.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 44444445555555555555555544322111 256777788888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 048751 744 DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCG-ELLHEM 806 (1004)
Q Consensus 744 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 806 (1004)
+..++..++.+|...|++++|+..|++..+... .+...+..+..++...++..++. ..+..+
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC---------
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888887542 24566677777776666666555 344444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-05 Score=70.92 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACF 790 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 790 (1004)
...+..+...+.+.|++++|+..|++..+..|.+...|..++.+|...|++++|+..+++.++... .+...|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 345677888899999999999999999999999999999999999999999999999999998652 3477888899999
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 048751 791 ATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 791 ~~~g~~~~A~~~~~~~~~~ 809 (1004)
...|++++|...|++.++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999988653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-05 Score=73.75 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFA 791 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 791 (1004)
..+..+...+.+.|++++|+..|+++....|.+...|..++.+|...|++++|+..|++...... .+...+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 34455666677777777777777777777777777777777777777777777777777776542 33566667777777
Q ss_pred HcCCHHHHHHHHHHHHH
Q 048751 792 TNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 792 ~~g~~~~A~~~~~~~~~ 808 (1004)
..|++++|...|++.++
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777777654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-05 Score=67.88 Aligned_cols=93 Identities=14% Similarity=0.054 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 048751 680 TSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG 759 (1004)
Q Consensus 680 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 759 (1004)
..+...+...|++++|...++........ +...+..+..++...|++++|...++++.+..|.+...+..++.++...|
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 33333444444444444444444332211 33344444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 048751 760 MLDEAIDAAEEMKL 773 (1004)
Q Consensus 760 ~~~~A~~~~~~~~~ 773 (1004)
++++|...+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 44444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.9e-05 Score=70.78 Aligned_cols=104 Identities=18% Similarity=0.093 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD-------AVSFAA 750 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~ 750 (1004)
.+..+...+.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|++.+++..+..|.+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4556667777777777777777777765443 56677777777888888888888887777655322 236777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048751 751 MMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYN 784 (1004)
Q Consensus 751 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 784 (1004)
++.++...|++++|++.|++.++.. ||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHH
Confidence 8888888888888888888887743 5655443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-05 Score=74.12 Aligned_cols=98 Identities=12% Similarity=-0.017 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
..+..+...+.+.|++++|...|+.+....+. +...|..+..+|.+.|++++|+..|+++....|.++..+..++.+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44556667788888888888888888876543 67788888888899999999999999999988888888999999999
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 048751 757 TMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 757 ~~g~~~~A~~~~~~~~~~~ 775 (1004)
..|++++|+..|++.++..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999998888743
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=4.1e-05 Score=67.07 Aligned_cols=99 Identities=10% Similarity=0.045 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMAC 789 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 789 (1004)
....+..++..+...|++++|...|+++....|.+...+..++.++...|++++|+..+++..+... .+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 3456778888999999999999999999999999999999999999999999999999999988652 357788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 048751 790 FATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999998754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.2e-05 Score=70.31 Aligned_cols=99 Identities=11% Similarity=0.025 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 709 PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMA 788 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 788 (1004)
.+...+..+...+...|++++|...|++..+..|.+..+|..++.++...|++++|+..+++..+... .+...|..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 35566667777777777777777777777777777777777777777777777777777777776542 24666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 048751 789 CFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 789 ~~~~~g~~~~A~~~~~~~~~ 808 (1004)
++...|++++|...|++.++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-05 Score=71.08 Aligned_cols=100 Identities=12% Similarity=-0.083 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 048751 674 ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMY 753 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 753 (1004)
.+...+..+...+...|++++|...++...+.... +...+..+..++...|++++|...++++.+..|.+..+|..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 45667777778888888888888888887775543 56778888888888888888988888888888888888888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 048751 754 LYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 754 ~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
+|...|++++|+..|+++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999998888888764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.7e-05 Score=73.57 Aligned_cols=97 Identities=7% Similarity=0.039 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACF 790 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 790 (1004)
...+..+...+.+.|++++|+..|++..+..|.+...|..++.+|...|++++|+..+++.++... .+...|..+..++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 345556666666667777777777777666666666777777777777777777777776666442 2355666666666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 048751 791 ATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 791 ~~~g~~~~A~~~~~~~~~ 808 (1004)
...|++++|...|++.++
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 777777777777766654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.2e-05 Score=73.02 Aligned_cols=100 Identities=12% Similarity=-0.021 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 048751 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL 754 (1004)
Q Consensus 675 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 754 (1004)
+...+..+...+...|++++|+..|++..+.... +...|..+..+|.+.|++++|+..|+++.+..|.+..+|..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456777778888888888888888888876543 677888899999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 048751 755 YKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 755 ~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
|...|++++|+..|++.++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999998754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=3.2e-05 Score=75.71 Aligned_cols=131 Identities=11% Similarity=-0.017 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWAN---------------QIVLTSLIKAYSKIGCLEGAKQVYEKMKEME 706 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 706 (1004)
..+..+...+...|++++|+..|++..+...... ...+..+..++...|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455556666666666666666666665422111 2677888888899999999999999988865
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 048751 707 GGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAI-DAAEEMKL 773 (1004)
Q Consensus 707 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 773 (1004)
. .+...+..+..+|...|++++|...|++..+..|.+..++..+..++...++.+++. ..+..+..
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 367788889999999999999999999999999999999999999988888777766 44555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-05 Score=70.67 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQ 795 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 795 (1004)
.+...+.+.|++++|+..|+++.+..|.+..+|..++.++...|++++|+..+++.++..+ .+...+..+..++...|+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 3445555666666666666666666666666666666666666666666666666665431 234555566666666666
Q ss_pred HHHHHHHHHHHH
Q 048751 796 LRQCGELLHEML 807 (1004)
Q Consensus 796 ~~~A~~~~~~~~ 807 (1004)
+++|+..+++.+
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-05 Score=70.39 Aligned_cols=96 Identities=18% Similarity=-0.002 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTM 758 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 758 (1004)
+..+...+.+.|++++|...++++.+..+. +...|..+..++...|++++|+..|+++.+..|.+..++..++.+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 456677888999999999999999886654 7888889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCC
Q 048751 759 GMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 759 g~~~~A~~~~~~~~~~~ 775 (1004)
|++++|+..+++.++..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998743
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-05 Score=70.68 Aligned_cols=57 Identities=9% Similarity=0.038 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMK 772 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 772 (1004)
.++..+...|++++|...|+++.+..|.+...+..++.++...|++++|+..++++.
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.4e-05 Score=69.50 Aligned_cols=95 Identities=9% Similarity=-0.053 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR--DVISYNQVMACF 790 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~ 790 (1004)
.+..+...+...|++++|...|+++.+..|.+..++..++.++...|++++|+..+++..+... . +...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHH
Confidence 3445555566666666666666666666666666666666666666666666666666665432 2 345555666666
Q ss_pred HHc-CCHHHHHHHHHHHHH
Q 048751 791 ATN-GQLRQCGELLHEMLT 808 (1004)
Q Consensus 791 ~~~-g~~~~A~~~~~~~~~ 808 (1004)
... |++++|.+.+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 666 666666666666543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-05 Score=70.28 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHH
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD-------AVSF 748 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~ 748 (1004)
...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+..|.+ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45677788888999999999999999887653 367788888999999999999999999988876544 7788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 749 AAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMA 788 (1004)
Q Consensus 749 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 788 (1004)
..++.++...|++++|...++++.+.. |+...+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 888888888888888888888888754 55555544443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.1e-05 Score=68.21 Aligned_cols=98 Identities=15% Similarity=-0.008 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQV--DAVSFAAMMYL 754 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 754 (1004)
..+..+...+...|++++|...++++.+.... +...+..+..++...|++++|...|+++.+..|. +...+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34555666677777777777777777665433 5667777788888888888888888888888777 78888888888
Q ss_pred HHhc-CCHHHHHHHHHHHHHCC
Q 048751 755 YKTM-GMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 755 ~~~~-g~~~~A~~~~~~~~~~~ 775 (1004)
+... |++++|++.++++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888887755
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=8.6e-05 Score=68.31 Aligned_cols=97 Identities=18% Similarity=0.093 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPD----TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAM 751 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 751 (1004)
...+..+...+...|++++|...+++..+.. |+ ...+..+..+|...|++++|+..+++..+..|.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444555555555555555555554432 22 34455555556666666666666666666555555666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 048751 752 MYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
+.++...|++++|+..+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666666666666666666553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00011 Score=67.61 Aligned_cols=113 Identities=16% Similarity=0.065 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWAN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASN 715 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 715 (1004)
+...+..+...+...|++++|++.|+...+.. |+ ...+..+...+...|++++|...+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 45667777777777777777777777777643 44 566777777788888888888888887765433 566777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
.+..++...|++++|...|++..+..|.+...+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8888888888888888888888888887777776655543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00041 Score=77.46 Aligned_cols=167 Identities=10% Similarity=0.010 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHH----CCCCCC-HH
Q 048751 502 TLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSV----VEYNVMIKAYGKSKLYDKAFSLFKVMKN----LGTWPD-EC 572 (1004)
Q Consensus 502 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~ 572 (1004)
++..++..|...|++++|...+..+....+..++. ...+.+...+...|++++|..++.+... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 45667777888888888888777765543332222 1233344444556788888888777643 222222 34
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhC--CC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCC-C-C--H
Q 048751 573 TYNSLVQMFAGGDLMGQAVDLLAEMQGA--GF---KPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRA--GVE-P-N--E 641 (1004)
Q Consensus 573 t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~ 641 (1004)
++..+...+...|++++|..++..+... +. +....++..++..|...|++++|..++++.... .+. | . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6677777888888888888888776542 11 112346777788888888888888888776542 111 1 1 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMR 668 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 668 (1004)
..+..+...+...|++++|...|.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445666666777788888887776664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00015 Score=64.86 Aligned_cols=92 Identities=16% Similarity=0.044 Sum_probs=46.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHh
Q 048751 683 IKAYSKIGCLEGAKQVYEKMKEMEGGPD--TVASNTMISLYAELGMVTEAESMFNDIREKGQVD---AVSFAAMMYLYKT 757 (1004)
Q Consensus 683 i~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 757 (1004)
...+...|++++|...++.+.+..+... ...+..+..++.+.|++++|...|+++.+..|.+ ..++..++.++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 3344455555555555555544332211 0244445555555555555555555555555544 4455555555555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 048751 758 MGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~~ 774 (1004)
.|++++|+..|+++.+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00011 Score=67.06 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQV-------DAV-----SFAAMMYLYKTMGMLDEAIDAAEEMKLS-----G 775 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 775 (1004)
.+......+.+.|++++|+..|++..+..|. +.. .|..++.++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3445666777788888888888888777766 433 8888888888889988888888888874 0
Q ss_pred CCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 776 LLRD-VISY----NQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 776 ~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+.|+ ...| .....++...|++++|+..|++.++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1365 5567 7888888888888888888888754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00036 Score=80.14 Aligned_cols=187 Identities=6% Similarity=-0.008 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--
Q 048751 692 LEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM----------VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG-- 759 (1004)
Q Consensus 692 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 759 (1004)
.++|++.++.+....++ +..+|+.-..++...|+ ++++++.++.+.+..|.+..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 35667777777775544 55566666666666666 777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHH
Q 048751 760 MLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNG-QLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQL 838 (1004)
Q Consensus 760 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l 838 (1004)
++++++..++++.+... .+..+|+.-...+.+.| .++++++.+.++++.. .-+...+.....++.+.+...++
T Consensus 124 ~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~---- 197 (567)
T 1dce_A 124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS---- 197 (567)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS----
T ss_pred cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc----
Confidence 56777777777777553 45667777666677777 6777777777665432 12333333333333221110000
Q ss_pred HhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHH
Q 048751 839 QSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDK 901 (1004)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 901 (1004)
... . -...+.++++++.+++++... |.|..+|+.+...+.+.|+.++
T Consensus 198 ------~~~--~-------~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 ------GPQ--G-------RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp ------SSC--C-------SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ------ccc--c-------cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 000 0 001356788999999999887 5589999999999999888555
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00016 Score=64.75 Aligned_cols=95 Identities=12% Similarity=-0.021 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDA---VSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD--VISYNQVMAC 789 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~ 789 (1004)
..+...+...|++++|...|+++.+..|.+. .++..++.++...|++++|+..++++.+...... ...+..+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3466778899999999999999999888776 6888999999999999999999999988653111 5678888889
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 048751 790 FATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 790 ~~~~g~~~~A~~~~~~~~~~ 809 (1004)
+...|++++|...|+++++.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00011 Score=67.02 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------C
Q 048751 680 TSLIKAYSKIGCLEGAKQVYEKMKEMEGGP------D-----TVASNTMISLYAELGMVTEAESMFNDIREK-------G 741 (1004)
Q Consensus 680 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 741 (1004)
......+.+.|++++|+..|++.++..+.. + ...|..+..++.+.|++++|+..+++.++. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444555555555555555555433221 2 237888888899999999999999999988 8
Q ss_pred CCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 742 QVDAVSF----AAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 742 ~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
|.+..+| ...+.++...|++++|+..|++.++
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9998999 9999999999999999999999886
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00022 Score=79.69 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=30.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048751 613 IAAYARLGQLSNAVDLFHEMRRAGVEPN----------------EVVYGSLINGFAATGKVEEALQYFRMMR 668 (1004)
Q Consensus 613 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 668 (1004)
...+.+.|++++|++.|..+.+...... ...+..++..|...|++++|.+++..+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445666777777777777666431111 0124455555555566666555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=5.9e-05 Score=70.58 Aligned_cols=95 Identities=15% Similarity=0.062 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQ--V----DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS----GLLRD-VI 781 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~ 781 (1004)
++..+...+...|++++|...+++..+..+ . ...++..++.++...|++++|+..+++..+. +..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344455555556666666666655544321 1 1334555666666666666666666655432 11011 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 782 SYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 782 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
++..+...+...|++++|...+++.+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45556666666666666666666654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00012 Score=68.69 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDV 780 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 780 (1004)
...|..+..+|.+.|++++|+..++++.+..|.++.+|..++.+|...|++++|+..|++.++.. |+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~ 130 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCC
Confidence 45677788888888888888888888888888888888888888888888888888888888754 553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0001 Score=82.82 Aligned_cols=163 Identities=11% Similarity=0.008 Sum_probs=107.3
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 620 GQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVY 699 (1004)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 699 (1004)
+++++|...|+...... +-....|..+...|.+.|++++|+..|++.++....... + ..+...++
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~~- 312 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESKAS- 312 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHHHH-
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHHHH-
Confidence 34445554444332211 123567777888888888888888888887764221110 0 00011100
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048751 700 EKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD 779 (1004)
Q Consensus 700 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 779 (1004)
.. .....|..+..+|.+.|++++|+..|+++.+..|.+..+|..++.+|...|++++|+..|+++++.. |+
T Consensus 313 ~~-------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~ 383 (457)
T 1kt0_A 313 ES-------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQ 383 (457)
T ss_dssp HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC
Confidence 00 1245677788888889999999999999988888888889999999999999999999999888754 44
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 048751 780 -VISYNQVMACFATNGQLRQCGE-LLHEM 806 (1004)
Q Consensus 780 -~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 806 (1004)
...+..+..++...|+.++|.. .+..|
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577778888888888777653 44444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.91 E-value=2e-05 Score=69.40 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=63.4
Q ss_pred cCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEG--GPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
.|++++|+..+++..+.+. +.+..++..+..+|...|++++|+..|+++.+..|.+..++..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4677777788877777531 22445677777888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHCC
Q 048751 767 AAEEMKLSG 775 (1004)
Q Consensus 767 ~~~~~~~~~ 775 (1004)
.+++.++..
T Consensus 83 ~~~~al~~~ 91 (117)
T 3k9i_A 83 LLLKIIAET 91 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 888877643
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=8.4e-05 Score=69.50 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C----CHHH
Q 048751 644 YGSLINGFAATGKVEEALQYFRMMRECGLW-AN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGG-P----DTVA 713 (1004)
Q Consensus 644 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~ 713 (1004)
+..+...+...|++++|+..+++..+.... .+ ..++..+...+...|++++|...+++..+.... . ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444444555554444444321100 01 124445555555666666666666554432110 0 1334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 714 SNTMISLYAELGMVTEAESMFNDIREKG--Q----VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+..+...+...|++++|...+++..+.. . ....++..++..+...|++++|...+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5566777777788888877777766542 1 1234677788888888888888888887765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00015 Score=68.15 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREK------------------GQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
.+...+..+.+.|++++|+..|++..+. .|.+..+|..++.+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4556667777777777777777777665 4455678889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 775 GLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 775 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
.. .+...|..+..++...|++++|...|++.+..
T Consensus 93 ~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 52 34778888999999999999999999988754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00014 Score=81.74 Aligned_cols=146 Identities=12% Similarity=0.016 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048751 605 QCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIK 684 (1004)
Q Consensus 605 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 684 (1004)
....+..+...|.+.|++++|+..|++..+.. |+...+ .-+... .... .....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~----~~~~----~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESK----ASES----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHH----HHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHH----HHHH----HHHHHHHHHHH
Confidence 45678888999999999999999999988742 221000 001110 0100 12346667777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA 764 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 764 (1004)
+|.+.|++++|+..++++++.... +...|..+..+|...|++++|+..|+++.+..|.+..++..+..++...+++++|
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888887776543 6777888888888888888888888888888888888888888888888888777
Q ss_pred HH-HHHHHH
Q 048751 765 ID-AAEEMK 772 (1004)
Q Consensus 765 ~~-~~~~~~ 772 (1004)
.+ .+.+|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 63 344443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00012 Score=79.33 Aligned_cols=139 Identities=6% Similarity=-0.040 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 641 EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
...+..+...+.+.|++++|++.|++.++.- +.. ......+++.. .. ..+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~-------~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK-------LQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG-------GH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH-------HH-HHHHHHHHHHHHH
Confidence 4567778888888888888888888776520 000 00001111111 00 1134566777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCG 800 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 800 (1004)
|.+.|++++|+..++++.+..|.+..+|..++.+|...|++++|+..|+++.+... .+...+..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887777788888888888888888888888888777542 24556666666666666655554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.85 E-value=3.4e-05 Score=87.00 Aligned_cols=119 Identities=12% Similarity=0.025 Sum_probs=86.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
..+.+.|++++|.+.+++..+.... +..+|..+..+|.+.|++++|++.++++.+..|.+..+|..++.+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3455677888888888877775433 577788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 048751 764 AIDAAEEMKLSGLLRDVISYNQVMAC--FATNGQLRQCGELLH 804 (1004)
Q Consensus 764 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 804 (1004)
|++.++++.+... .+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888887542 123445555544 777888888888887
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00018 Score=78.02 Aligned_cols=140 Identities=10% Similarity=0.050 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKA 685 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 685 (1004)
...+..+...+.+.|++++|+..|++..+. .++. ......+++. +. -+.+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~-------~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGA-------KL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHG-------GG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHH-------HH-HHHHHHHHHHHHHH
Confidence 456888889999999999999999988752 0100 0001111111 11 01234577888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048751 686 YSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAI 765 (1004)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 765 (1004)
|.+.|++++|+..++++.+.... +..++..+..+|...|++++|+..|+++.+..|.+...+..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998886543 67788889999999999999999999999999999999999998888888877765
Q ss_pred H
Q 048751 766 D 766 (1004)
Q Consensus 766 ~ 766 (1004)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.79 E-value=6e-05 Score=85.00 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=95.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048751 647 LINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM 726 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 726 (1004)
+...+.+.|++++|++.|++..+... .+...+..+..++.+.|++++|++.+++..+.... +..++..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 34456677888888888888877643 45778888888888899999999999888886543 67788889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 048751 727 VTEAESMFNDIREKGQVDAVSFAAMMYL--YKTMGMLDEAIDAAE 769 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 769 (1004)
+++|++.|+++.+..|.+..++..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999888887787777777 888899999999988
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.72 E-value=4.3e-05 Score=67.23 Aligned_cols=85 Identities=9% Similarity=-0.018 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048751 445 NMVQEAEAVIIEMEKCGL--HIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETV 522 (1004)
Q Consensus 445 g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 522 (1004)
|++++|+..|++.++.+. +.+...+..+..++...|++++|...|++++...|.++.++..++.++...|++++|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444444321 112234444555555555555555555555555555666666666666666666666666
Q ss_pred Hhhhhhh
Q 048751 523 FYGKRDL 529 (1004)
Q Consensus 523 ~~~~~~~ 529 (1004)
|.+....
T Consensus 84 ~~~al~~ 90 (117)
T 3k9i_A 84 LLKIIAE 90 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.002 Score=73.92 Aligned_cols=136 Identities=6% Similarity=-0.048 Sum_probs=60.5
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHH
Q 048751 622 LSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG--KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIG-CLEGAKQV 698 (1004)
Q Consensus 622 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~ 698 (1004)
++++++.++.+.+.. +-+..+|+.-...+.+.+ +++++++.++++.+... -+...|+.-...+.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHH
Confidence 445555555554432 233444444444444444 34455555555444432 24444444444444444 44444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 699 YEKMKEMEGGPDTVASNTMISLYAEL--------------GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
++++++..+. +..+|+....++.+. +.+++|.+.++++....|.+..+|..+...+.+.++
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 4444443332 344444443333332 234444444444444444444444444444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=8.1e-05 Score=67.74 Aligned_cols=92 Identities=14% Similarity=0.048 Sum_probs=55.8
Q ss_pred cHHHHHHHHhHhhccCCchhh-hHHHHHHHHHhh----------hHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcC--
Q 048751 831 PIEAVKQLQSSYQEVKPYASE-AIITSVYSVVGL----------NALALGTCETLIKAEAYLDSFIYNVAIYAFKSSG-- 897 (1004)
Q Consensus 831 ~~~A~~~l~~~~~~~~~~~~~-~~~~~l~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 897 (1004)
+++|++.++.+++..|..... ..|+..+...++ +++|+..|+++++.. |.+..+|+.++.+|...|
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhccc
Confidence 445555555555555544442 224444444443 457777777777776 336677777777777664
Q ss_pred ---------ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048751 898 ---------KNDKALNTFMKMLDQGLEPDIVTCINLV 925 (1004)
Q Consensus 898 ---------~~~~A~~~~~~m~~~g~~pd~~t~~~l~ 925 (1004)
++++|++.|+++++ +.|+...|...+
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 67777777777776 567655444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00011 Score=82.23 Aligned_cols=87 Identities=10% Similarity=0.016 Sum_probs=51.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHH
Q 048751 721 YAELGMVTEAESMFNDIREKG-----QVD---AVSFAAMMYLYKTMGMLDEAIDAAEEMKL-----SGL-LRD-VISYNQ 785 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~ 785 (1004)
+...|++++|+.++++..+.. +.+ ..+++.|+.+|...|++++|+.++++.++ .|. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666666655432 222 23566666677777777777766666553 121 122 345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 048751 786 VMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
|...|...|++++|..++++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777777777777776653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00015 Score=65.92 Aligned_cols=93 Identities=15% Similarity=0.044 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 048751 690 GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM----------VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG 759 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 759 (1004)
+.+++|.+.++...+..+. +...|..+..++...++ +++|+..|++..+.+|.+..+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3444455555544444332 44444444444444433 457777777777777777777777777777664
Q ss_pred -----------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048751 760 -----------MLDEAIDAAEEMKLSGLLRDVISYNQ 785 (1004)
Q Consensus 760 -----------~~~~A~~~~~~~~~~~~~p~~~~~~~ 785 (1004)
++++|+..|++.++. .|+...|..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 677777777777663 355444433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00013 Score=78.13 Aligned_cols=147 Identities=13% Similarity=0.076 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048751 641 EVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISL 720 (1004)
Q Consensus 641 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1004)
...+..+...+.+.|++++|+..|++..... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 5667777888888888999999888887743 33321 122333333332221 1367778888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHHcCCHHH
Q 048751 721 YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMAC-FATNGQLRQ 798 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~ 798 (1004)
|.+.|++++|+..++++.+..|.+..+|..++.+|...|++++|+..|+++++.. |+ ...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988899999999999999999999999999987643 44 4444444444 234455666
Q ss_pred HHHHHHHHHH
Q 048751 799 CGELLHEMLT 808 (1004)
Q Consensus 799 A~~~~~~~~~ 808 (1004)
+...|.+|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7777777653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00032 Score=61.23 Aligned_cols=79 Identities=15% Similarity=0.013 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 694 GAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 694 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
.|+..+++..+.... +...+..+...|...|++++|+..|+++.+..|.+..+|..++.+|...|++++|+..|++..+
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666665433 5667777777788888888888888888877777777888888888888888888888877765
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00012 Score=78.54 Aligned_cols=150 Identities=11% Similarity=0.028 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 606 CLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKA 685 (1004)
Q Consensus 606 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 685 (1004)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 556777888888999999999999998875 354432 223344444433221 1367788888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHhcCCHHHH
Q 048751 686 YSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYL-YKTMGMLDEA 764 (1004)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 764 (1004)
+.+.|++++|+..+++.++.... +...|..+..+|...|++++|+..|+++.+..|.+..++..+..+ ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998886543 778888999999999999999999999998888888888888777 3445667788
Q ss_pred HHHHHHHHHCC
Q 048751 765 IDAAEEMKLSG 775 (1004)
Q Consensus 765 ~~~~~~~~~~~ 775 (1004)
...|.++....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888887643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00019 Score=80.25 Aligned_cols=102 Identities=12% Similarity=0.003 Sum_probs=79.6
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----CC-C
Q 048751 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLD-----QGL-EPD-IVTCINLVGCYGKAGLVEGVKRIHSQLKY-----GK-M 949 (1004)
Q Consensus 883 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~-~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~ 949 (1004)
..+++.|+.+|...|++++|..+++++++ .|- .|+ ..+++.|...|...|++++|+.+++++.. .| -
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45789999999999999999999999885 232 344 44788999999999999999999987641 22 1
Q ss_pred CCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC
Q 048751 950 EPN-ENLFKAVIDAYRNANREDLADLACQEMRTAFE 984 (1004)
Q Consensus 950 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 984 (1004)
-|+ ..+...+..++...|++++|+.++++++....
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233 34566777888899999999999999987653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00024 Score=61.39 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-------VIS 782 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~ 782 (1004)
+...+..+...+...|++++|+..|++..+..|.+..+|..++.++...|++++|+..+++.++.. |+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 345667778888888888888888888888888888888888888888888888888888888754 44 334
Q ss_pred HHHHHHHHHHcCCHHHHH
Q 048751 783 YNQVMACFATNGQLRQCG 800 (1004)
Q Consensus 783 ~~~l~~~~~~~g~~~~A~ 800 (1004)
+..+..++...|++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHhHhhhH
Confidence 444555555555444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00084 Score=55.28 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 711 TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACF 790 (1004)
Q Consensus 711 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 790 (1004)
...+..+...+...|++++|+..|++..+..|.+..++..++.++...|++++|+..+++..+... .+...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 345566666777777777777777777777777777777777777777777777777777766432 2345555555554
Q ss_pred HH
Q 048751 791 AT 792 (1004)
Q Consensus 791 ~~ 792 (1004)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0001 Score=63.86 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHH
Q 048751 675 NQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVD------AVSF 748 (1004)
Q Consensus 675 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~ 748 (1004)
+...+..+...+...|++++|.+.+++..+..+. +...+..+..++.+.|++++|+..++++.+..|.+ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3445666666777777777777777777665433 56667777777777777777777777777777666 6666
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 048751 749 AAMMYLYKTMGMLDEAIDAAE 769 (1004)
Q Consensus 749 ~~l~~~~~~~g~~~~A~~~~~ 769 (1004)
..+..++...|++++|+..++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 667777777766665554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0012 Score=57.53 Aligned_cols=79 Identities=8% Similarity=0.027 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 729 EAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 729 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+|+..|+++.+..|.+...+..++.+|...|++++|+..+++.++... .+...|..+..++...|++++|...|++.++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999999999998652 3477888999999999999999999998864
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0016 Score=53.60 Aligned_cols=83 Identities=20% Similarity=0.170 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 048751 676 QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLY 755 (1004)
Q Consensus 676 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (1004)
...+..+...+...|++++|...+++..+.... +..++..+..++.+.|++++|...|++..+..|.+..++..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 445666777777788888888888877765433 5667778888888888888888888888888888888888888777
Q ss_pred HhcC
Q 048751 756 KTMG 759 (1004)
Q Consensus 756 ~~~g 759 (1004)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0049 Score=55.66 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 048751 656 KVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE----LGMVTEAE 731 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 731 (1004)
++++|++.|++..+.|. ++.. |...|...+..++|.+.|++..+.+ +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34445555555444442 2222 3333334444444555555444432 33444444444444 44555555
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 048751 732 SMFNDIREKGQVDAVSFAAMMYLYKT----MGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 775 (1004)
.+|++..+. .++.++..|..+|.. .+++++|+.+|++..+.|
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555555443 234444455555554 455555555555554443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0076 Score=54.35 Aligned_cols=112 Identities=11% Similarity=-0.116 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 048751 690 GCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT----MGMLDEAI 765 (1004)
Q Consensus 690 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 765 (1004)
+++++|.+.|++..+.+. ++.. |...|...+.+++|.+.|++..+. .++.++..|..+|.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 467888888888888763 2332 667777777788888888888876 467788888888887 78888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 048751 766 DAAEEMKLSGLLRDVISYNQVMACFAT----NGQLRQCGELLHEMLTQKL 811 (1004)
Q Consensus 766 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 811 (1004)
.+|++..+.| +...+..|...|.. .+++++|..+|++..+.|.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888888764 46677777778877 7888888888888876653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0015 Score=55.23 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+...+..+..+|.+.|++++|+..|+++.+..|.+..+|..++.+|...|++++|+..+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455556666666666666666666666666666666666666666666666666666666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.023 Score=56.89 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=86.1
Q ss_pred hhhHhhhhHHHHHHhhhcc-CCchhHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHh-cC
Q 048751 862 GLNALALGTCETLIKAEAY-LDSFIYNVAIYAFKSS-----GKNDKALNTFMKMLDQGLEPD--IVTCINLVGCYGK-AG 932 (1004)
Q Consensus 862 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~pd--~~t~~~l~~~~~~-~g 932 (1004)
+....|...++++++.++. .+..+|..|+..|.+. |+.++|.+.|++.++ +.|+ ..++....+.++. .|
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 3445688889999998632 1466899999999995 999999999999998 6783 6788888888887 49
Q ss_pred ChhHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 048751 933 LVEGVKRIHSQLKYGKME--PNENLFKAVIDAYRNANREDLADLACQEMRTAF 983 (1004)
Q Consensus 933 ~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 983 (1004)
+.++|.+.+++....+-. |+-... ..++.++|..+++++..-|
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~la--------n~~~q~eA~~LL~~~~d~F 299 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLL--------VILSQKRARWLKAHVQDFF 299 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHH--------HHHHHHHHHHHHHTHHHHC
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHH--------HHHHHHHHHHHHHHhHHhc
Confidence 999999999998765544 443333 4466778888887766543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0029 Score=53.32 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 741 GQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 741 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
.|.++.++..++.+|...|++++|+..|+++++... .+...|..+..+|...|++++|...+++.++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467888999999999999999999999999998653 3467888999999999999999999998764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0042 Score=52.07 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=46.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAV-SFAAMMYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
.+..+.+.|++++|...|+++.+..|.+.. .+..++.+|...|++++|+..|++.++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455667778888888888888888777777 88888888888888888888888887754
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.054 Score=56.74 Aligned_cols=68 Identities=10% Similarity=0.061 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCc
Q 048751 779 DVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPY 848 (1004)
Q Consensus 779 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 848 (1004)
+..+|..+...+...|++++|...+++++..+ |+...+..+...+.-.|++++|.+.+++++...|..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 34555555444555566666666666665443 454444455555555566666666665555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.019 Score=47.25 Aligned_cols=68 Identities=10% Similarity=-0.063 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 709 PDTVASNTMISLYAELGM---VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 776 (1004)
.+...+..+..++...++ .++|..++++..+.+|.++.+...++..+.+.|++++|+..|+++++...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466777777777765544 68999999999999999999999999999999999999999999888653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0069 Score=50.67 Aligned_cols=82 Identities=21% Similarity=0.124 Sum_probs=57.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTV-ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
....+...|++++|...++++.+.... +.. .+..+..+|...|++++|.+.|+++.+..|.+..++.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 345667778888888888888775543 556 77788888888888888888888888888777766532 34
Q ss_pred HHHHHHHHHHHH
Q 048751 761 LDEAIDAAEEMK 772 (1004)
Q Consensus 761 ~~~A~~~~~~~~ 772 (1004)
+.+++..+++..
T Consensus 77 ~~~a~~~~~~~~ 88 (99)
T 2kc7_A 77 VMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHHHh
Confidence 455555554443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0081 Score=65.84 Aligned_cols=44 Identities=2% Similarity=-0.078 Sum_probs=32.4
Q ss_pred hhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 868 LGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
++.+++.+-...|....+++.|+..|...|++++|+.+|+++++
T Consensus 367 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 367 IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 33444444333344456799999999999999999999999885
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.041 Score=57.64 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=61.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 048751 740 KGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFK 819 (1004)
Q Consensus 740 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 819 (1004)
.++.++.+|..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.|.+... +.|...||.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 347788888888888877888888888888888865 7777777788888888999999888888865 356666665
Q ss_pred HH
Q 048751 820 VL 821 (1004)
Q Consensus 820 ~l 821 (1004)
..
T Consensus 348 ~~ 349 (372)
T 3ly7_A 348 WI 349 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0049 Score=67.57 Aligned_cols=63 Identities=10% Similarity=-0.071 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLD-----QG-LEPD-IVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 883 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g-~~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
..+++.|+.+|...|++++|+.+++++++ .| -.|+ ..+++.|...|...|++++|+.+++++.
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 45789999999999999999999999985 23 2455 4478999999999999999999998764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.34 Score=48.49 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHH
Q 048751 727 VTEAESMFNDIREKGQV--DAVSFAAMMYLYKTM-----GMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATN-GQLRQ 798 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~ 798 (1004)
...|...+++..+.+|. +..+|..++..|... |+.++|.+.|++.++.+..-+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 67888889999999887 777999999999985 89999999999999865322477888888888884 99999
Q ss_pred HHHHHHHHHHCCCC--CChh
Q 048751 799 CGELLHEMLTQKLL--PDNG 816 (1004)
Q Consensus 799 A~~~~~~~~~~~~~--p~~~ 816 (1004)
|.+++++.+..... |+..
T Consensus 259 a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHcCCCCCCCChh
Confidence 99999999887655 5543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.02 Score=62.79 Aligned_cols=97 Identities=8% Similarity=-0.010 Sum_probs=60.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHH
Q 048751 789 CFATNGQLRQCGELLHEMLTQ---KLLPD----NGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVV 861 (1004)
Q Consensus 789 ~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~ 861 (1004)
.+...|++++|..++++.++. -+.|+ ..++..+..+|...|++++|+.+++++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~-------------------- 355 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT-------------------- 355 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------------
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH--------------------
Confidence 344556666666666666532 12222 124455555566666666666655553
Q ss_pred hhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 862 GLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD 911 (1004)
Q Consensus 862 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 911 (1004)
++.+++.+-...|....+++.|+..|...|++++|+.+++++++
T Consensus 356 ------L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 356 ------MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ------HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444443333343456789999999999999999999999885
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.019 Score=62.99 Aligned_cols=60 Identities=15% Similarity=0.030 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 748 FAAMMYLYKTMGMLDEAIDAAEEMKL-----SG-LLRD-VISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 748 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
++.++.+|...|++++|+.+++++++ .| ..|+ ..+++.|...|...|++++|..++++.+
T Consensus 332 ~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 332 LDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444444444444444444444332 11 1122 3456667777777777777777766653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.056 Score=48.47 Aligned_cols=81 Identities=11% Similarity=0.051 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 048751 727 VTEAESMFNDIREKGQVDAVSFAAMMYLYKTMG---MLDEAIDAAEEMKLSGLLR--DVISYNQVMACFATNGQLRQCGE 801 (1004)
Q Consensus 727 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 801 (1004)
...+++.|.+..+.++++..+...++.++++.+ ++++++.+++++.+.. .| +...+..+.-++.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 345555566555556666666666666666666 4556666666666644 13 23444555556667777777777
Q ss_pred HHHHHHH
Q 048751 802 LLHEMLT 808 (1004)
Q Consensus 802 ~~~~~~~ 808 (1004)
+++.+++
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.21 Score=60.58 Aligned_cols=129 Identities=13% Similarity=0.151 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
..++..+.+.|..++|+++.+... .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555555666666655442111 0112234556666666664322 2556666777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLH 804 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 804 (1004)
|+++.|++.|.++.. |..+...|...|+.+...++.+.....|. ++....+|.+.|++++|++++.
T Consensus 695 ~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp TCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 777777776666543 23344444445555554444444444331 2222333444555555555554
Q ss_pred H
Q 048751 805 E 805 (1004)
Q Consensus 805 ~ 805 (1004)
+
T Consensus 761 ~ 761 (814)
T 3mkq_A 761 K 761 (814)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.1 Score=46.78 Aligned_cols=84 Identities=5% Similarity=-0.025 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGPDTVASNTMISLYAELG---MVTEAESMFNDIREKG-Q-VDAVSFAAMMYLYKTMGMLDEAIDA 767 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~ 767 (1004)
..+.+.|.+..+.+. ++..+...+..++++.. ++++++.+|+.+.+.. | .+...+..++-+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 445555555555444 57777777777788777 5668888888887776 3 2456777777888888888888888
Q ss_pred HHHHHHCCCCCC
Q 048751 768 AEEMKLSGLLRD 779 (1004)
Q Consensus 768 ~~~~~~~~~~p~ 779 (1004)
++.+++. .|+
T Consensus 94 ~~~lL~i--eP~ 103 (152)
T 1pc2_A 94 VRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHH--CTT
T ss_pred HHHHHhc--CCC
Confidence 8888874 364
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.59 E-value=5.4 Score=47.31 Aligned_cols=191 Identities=14% Similarity=0.057 Sum_probs=103.5
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHH
Q 048751 615 AYARLGQLSNAVDLFHEMRRAGVEPN--EVVYGSLINGFAATGKVEEALQYFRMMRECGL--W-----ANQIVLTSLIKA 685 (1004)
Q Consensus 615 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----~~~~~~~~li~~ 685 (1004)
+....|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567888888877766553210122 23334444556666666677777776554311 0 111112222223
Q ss_pred HHHcCC-HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHH
Q 048751 686 YSKIGC-LEGAKQVYEKMKEMEGGPDTV--ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 686 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 762 (1004)
+...|. -+++.+.+..+....- .... .--+|.-.+.-.|+-+-...+++.+.+....+..-...++-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 333332 2455666665554221 1111 11233344556677777777777776654334444455555666778888
Q ss_pred HHHHHHHHHHHCCCCCCHH-HH---HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048751 763 EAIDAAEEMKLSGLLRDVI-SY---NQVMACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 763 ~A~~~~~~~~~~~~~p~~~-~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
.+..+.+.+... .++. -| .++.-+|+..|+......+++.+.+.
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC
Confidence 888888887763 3322 22 23444667788876666688887754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.33 Score=58.75 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=76.1
Q ss_pred HHHHhcCChHHHHH-HHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048751 334 DLYGKAGRLQDAAN-VFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNI 412 (1004)
Q Consensus 334 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 412 (1004)
......+++++|.+ ++..+ |+......++..+.+.|..++|.++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445788888876 44211 112223566667777888888876653211 112344567888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHH
Q 048751 413 NAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIF 489 (1004)
Q Consensus 413 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 489 (1004)
++|+++.+.+ .+...|..+...+.+.|+++.|.++|..+.. +..+...+...|+.+...++.
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 8888775443 4667888888888888888888888887642 344555555666666544443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.1 Score=42.77 Aligned_cols=64 Identities=8% Similarity=-0.051 Sum_probs=43.5
Q ss_pred CCcHHHHHHHHHhcCC---HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhh
Q 048751 466 EHSVPGVMKMYINEGL---LHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDL 529 (1004)
Q Consensus 466 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 529 (1004)
+..+..+..++...++ .++|..++++.+..+|.++.+...++..+.+.|++++|+..|..+.+.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3344445555543333 567777777777777777777777777777777777777777777663
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.24 E-value=6.9 Score=46.41 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 048751 329 YNTLIDLYGKAGRLQDAANVFAEMLK 354 (1004)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (1004)
|..+++.+.+.++.+.+.++|+.+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67777788888888888888888764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.2 Score=42.06 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVS 747 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 747 (1004)
.++..+..++.+.|+++.|...++++.+..|.+..+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 344444444444444444444444444444444433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.59 Score=43.00 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=70.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEA 764 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 764 (1004)
.....|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|++... +..+.-.|...|+.+.-
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHH
Confidence 345678888888877665 2677788888888888888888888877654 34556667777777776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048751 765 IDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEM 806 (1004)
Q Consensus 765 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 806 (1004)
.++.+.....|- ++....++...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 666666655542 344455566778888888877543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.62 E-value=1.7 Score=39.96 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=51.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhH
Q 048751 475 MYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDK 554 (1004)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 554 (1004)
.....|+++.|.++.+.+ .+...|..|++.....|+++-|++.|.+..+ +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHH
Confidence 344556666666665544 3455666666666666666666666665544 3444444555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 048751 555 AFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLL 594 (1004)
Q Consensus 555 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 594 (1004)
-.++-+.....|- ++.....+.-.|+++++.++|
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHH
Confidence 4444443333331 223333333445555555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.36 Score=40.49 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 710 DTVASNTMISLYAELGMVTEAESMFNDIREKG-------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 710 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
+..-+..|+..+.+.|++..|...|+.+.+.. ......+..++.+|.+.|++++|+..++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455567777777888888888877776542 234567777888888888888888888877764
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.006 Score=64.89 Aligned_cols=236 Identities=14% Similarity=0.085 Sum_probs=132.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048751 168 NVIHYNIVLRALGRAQKWDELRLRWIEMAKNGVLPTNNTYGMLVDVYGKAGLIKEALLWIKHMKLRGIFPDEVTMNTVVR 247 (1004)
Q Consensus 168 ~~~~~~~li~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 247 (1004)
|+..|..+|.+..+.|+|++....+.-.++. ..++..=+.|+-+|++.|+..+- .+.=-.|+..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~el-------Eefl~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAEL-------EEFINGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTT-------TSTTSCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHH-------HHHHcCCCcccHHHHHH
Confidence 4455667777777778888777765544433 33445556788888888875443 33223577777788888
Q ss_pred HHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcccCCCCCCCCchh
Q 048751 248 VLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLDMGNSVRKPRLTS 327 (1004)
Q Consensus 248 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 327 (1004)
-|...|.++.|.-+|..+..-. .+.+. +++.+ ..........+.+++.
T Consensus 153 rcf~e~lYeAAKilys~isN~a------------kLAst-----------LV~L~---------~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFG------------RLAST-----------LVHLG---------EYQAAVDGARKANSTR 200 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCT------------TTSSS-----------SSSCS---------GGGSSTTTTTTCCSSC
T ss_pred HHHHccCHHHHHHHHHhCccHH------------HHHHH-----------HHHHH---------HHHHHHHHHHhcCChh
Confidence 8888888888877776532100 00000 00000 0111112334456677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 328 TYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYA 407 (1004)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 407 (1004)
||-.+-.+|...+.+.-|.-.--.++-. || ....++.-|-..|.+++-+.+++..+.. -......|+-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 8888888888888887776543333321 11 1234555567778888877777776632 1245667777777777
Q ss_pred hcCCHHHHHHHHHHHHH-cCCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 048751 408 DVGNINAALRYYWKIRE-VGLFP------DSVTQRAILHILCQRNMVQEAE 451 (1004)
Q Consensus 408 ~~g~~~~A~~~~~~m~~-~g~~p------~~~~~~~li~~~~~~g~~~~A~ 451 (1004)
+- +.++-++.++.... .++.. ....|.-++-.|++-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 65 33333333322111 11111 1223666666666666666554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.15 E-value=0.41 Score=42.21 Aligned_cols=111 Identities=12% Similarity=0.119 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHHcCCHHHHHHHHHHHHhCC
Q 048751 640 NEVVYGSLINGFAATGKV------EEALQYFRMMRECGLWANQI-VLTSLIK------AYSKIGCLEGAKQVYEKMKEME 706 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~~~~~~~ 706 (1004)
|..+|-..+..+.+.|+. +...++|++.... ++|+.. .|...+. .+...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555555 5556666666553 333311 0111110 0122356666666666665543
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 048751 707 GGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMM 752 (1004)
Q Consensus 707 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 752 (1004)
-.. ..+|......-.+.|+++.|++++.+....+|.+.....+.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 333 555555555556666666666666666666665555544443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.51 E-value=0.57 Score=40.27 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=58.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE---AIDAAEEMKLSGLLR--DVISYNQVMACFATNGQL 796 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 796 (1004)
.....+..+++.|......++++..+-..+++++.+..+..+ ++.+++++...+. | .......|.-++.+.|++
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHhhhH
Confidence 333445566666766666667777777778888887776555 7777777776542 3 233445566677788888
Q ss_pred HHHHHHHHHHHHC
Q 048751 797 RQCGELLHEMLTQ 809 (1004)
Q Consensus 797 ~~A~~~~~~~~~~ 809 (1004)
++|.++++.+++.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.60 E-value=3e-05 Score=81.90 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048751 640 NEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMIS 719 (1004)
Q Consensus 640 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1004)
+..||..+-.+|...+.+..|.-.--.++-. +| -...++..|-..|.+++-+.+++...... .....+|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 4556666666666666665554443333321 11 12234455556666666666666554321 235566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHc-C-C------CCHHHHHHHHHHHHhcCCHHHHH
Q 048751 720 LYAELGMVTEAESMFNDIREK-G-Q------VDAVSFAAMMYLYKTMGMLDEAI 765 (1004)
Q Consensus 720 ~~~~~g~~~~A~~~~~~~~~~-~-~------~~~~~~~~l~~~~~~~g~~~~A~ 765 (1004)
.|++- ++++-.+.++....+ + | .....|..++-.|.+-..+|.|.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 66553 233222222211111 1 1 23334666666677666776654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.25 E-value=1.1 Score=38.53 Aligned_cols=73 Identities=4% Similarity=-0.101 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 048751 674 ANQIVLTSLIKAYSKIGCLEG---AKQVYEKMKEMEGG-PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAV 746 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 746 (1004)
++..+-..+.-++.+..+... ++.+++.+.+.+.+ -.......|.-++.+.|++++|++.++.+.+..|.+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 444444444445554444433 55555555443210 01122233445555666666666666666655555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.03 E-value=1.5 Score=38.63 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=37.7
Q ss_pred HHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048751 858 YSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP 916 (1004)
Q Consensus 858 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 916 (1004)
+...++.++|.++|+.+++.+... ...|.+.+.-=.+.|+.+.|.+++.+.+..+-+|
T Consensus 70 ~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 70 LKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 345567777777777777653232 5556666666667788888888888777654443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.93 E-value=7.2 Score=33.62 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 776 (1004)
+.-++.+...|+-++-.+++..+....++++.....++.+|.+.|+..+|.+++.++-++|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444555555555555555554444445555555555555555555555555555555443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.74 E-value=16 Score=37.43 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=91.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHH
Q 048751 364 FNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYY----WKIREVGLFPDSVTQRAILH 439 (1004)
Q Consensus 364 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~li~ 439 (1004)
|.++..-|.+.+++++|.+++-.-. ..+.+.|+...|-++- +-..+.++.+|......|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455556778888888887765432 1233445555444443 44445566677665555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 440 ILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEA 519 (1004)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 519 (1004)
.+.... ++...... -...|+++-.+.......++.....++..|.+.+++.+|
T Consensus 103 L~~~~~------------------~~~p~r~~---------fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 103 CLRLFQ------------------PGEPVRKR---------FVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHTTSC------------------TTCHHHHH---------HHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCC------------------CCCcHHHH---------HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 443322 11111111 112222222221122345678888899999999999999
Q ss_pred HHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 048751 520 ETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQ 598 (1004)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 598 (1004)
+..|- .|..+++..+..++-.+.+.+...+ ++.+.-..++. |...++...|..+++...
T Consensus 156 e~H~i-----lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 156 EKHLV-----LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHT-----TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHHHH-----hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 88884 2344444566555554444433211 12222233333 344567777777665554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=89.49 E-value=9.6 Score=32.86 Aligned_cols=33 Identities=15% Similarity=-0.015 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 048751 534 KSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLG 566 (1004)
Q Consensus 534 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 566 (1004)
++....-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 123 ~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 123 VSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333333344444444444444444444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=6.7 Score=41.99 Aligned_cols=77 Identities=12% Similarity=0.035 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH-----cCCCCCcHHHHHHH
Q 048751 886 YNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLK-----YGKMEPNENLFKAV 959 (1004)
Q Consensus 886 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l 959 (1004)
...++.++...|++++|+..+..+.. ..| +...+..++.++.+.|+..+|.+.|+.+. ..|++|.+.+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44566777888888888888888876 467 77788888888889999988888887653 35888887665554
Q ss_pred HHHHH
Q 048751 960 IDAYR 964 (1004)
Q Consensus 960 ~~~~~ 964 (1004)
-.++.
T Consensus 252 ~~il~ 256 (388)
T 2ff4_A 252 ERILR 256 (388)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 44443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.24 E-value=2 Score=49.99 Aligned_cols=84 Identities=8% Similarity=0.022 Sum_probs=58.3
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChhHHHHHHHHHH-----c
Q 048751 881 LDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGKAG---------LVEGVKRIHSQLK-----Y 946 (1004)
Q Consensus 881 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~~g---------~~~~A~~~~~~~~-----~ 946 (1004)
.+..=|..|+....+.+++++|.+.|+..+.. .=++..+..|+..|.+.+ +.+.....+-++. .
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~Rw 688 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCRY 688 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhhc
Confidence 34455999999999999999999999999874 347789999999998877 5565555554442 2
Q ss_pred CCCCCcHHHHHHHHHHHHhcC
Q 048751 947 GKMEPNENLFKAVIDAYRNAN 967 (1004)
Q Consensus 947 ~~~~p~~~~~~~l~~~~~~~g 967 (1004)
+. +-.......+...+.+.|
T Consensus 689 Y~-efs~~l~~~l~kLi~~~G 708 (754)
T 4gns_B 689 YN-YCQIFNLQLLEKLCNELG 708 (754)
T ss_dssp TB-CCCHHHHHHHHHHHHHHC
T ss_pred cc-ccCHHHHHHHHHHHHHhC
Confidence 22 233444455555554444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.09 E-value=25 Score=35.84 Aligned_cols=173 Identities=10% Similarity=-0.020 Sum_probs=88.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHH
Q 048751 364 FNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRY----YWKIREVGLFPDSVTQRAILH 439 (1004)
Q Consensus 364 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~li~ 439 (1004)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++ .+-..+.+..++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34555567777788887777654321 23344555554443 344444566666555555554
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048751 440 ILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEA 519 (1004)
Q Consensus 440 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 519 (1004)
.+.... ++......+ ...|.++-.+.......++.....++..|.+.|++.+|
T Consensus 101 l~~~~p------------------~~~~~r~~f---------i~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 101 LIAELD------------------PSEPNLKDV---------ITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHTTCC------------------TTCTTHHHH---------HHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCC------------------CCCchHHHH---------HHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 443211 111111111 11222222222122335778888899999999999999
Q ss_pred HHHHhhhhhhcCCCCCHHHHHHHHHHHHcC---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 048751 520 ETVFYGKRDLVGQKKSVVEYNVMIKAYGKS---KLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAE 596 (1004)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 596 (1004)
+..|-. +...|...+..++--+.+. |...++ +.+.-..++. |...++...|..+++.
T Consensus 154 ~~H~i~-----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~ 213 (312)
T 2wpv_A 154 ERYFML-----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDI 213 (312)
T ss_dssp HHHHHT-----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHH
T ss_pred HHHHHh-----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHH
Confidence 887742 1222344555554444333 332221 1222222332 3456778888887776
Q ss_pred HH
Q 048751 597 MQ 598 (1004)
Q Consensus 597 m~ 598 (1004)
..
T Consensus 214 f~ 215 (312)
T 2wpv_A 214 FL 215 (312)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.74 E-value=9.2 Score=47.74 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 048751 745 AVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD----VISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKV 820 (1004)
Q Consensus 745 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 820 (1004)
...|..++..+.+.|.++.++++....++.....+ ...|..+..++...|++++|...+-.+..... -...++.
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 45678888899999999999988887776432222 12578888999999999999999988865433 4567777
Q ss_pred HHHHHHcCCCcH
Q 048751 821 LFTILKKGGFPI 832 (1004)
Q Consensus 821 l~~~~~~~g~~~ 832 (1004)
++..++..|..+
T Consensus 977 LV~~lce~~~~~ 988 (1139)
T 4fhn_B 977 FVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHCCHH
T ss_pred HHHHHHhCCChh
Confidence 777777666543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.69 E-value=35 Score=37.10 Aligned_cols=95 Identities=11% Similarity=0.008 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC----HH
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEM--EGGPD---TVASNTMISLYAELGMVTEAESMFNDIREKG---QVD----AV 746 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~----~~ 746 (1004)
...|...+...|++.+|.+++..+... +.... ...+...+..|...+++..|..++.++.... +++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345666677777777777777766432 11111 2244555667777788888877777764321 222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 747 SFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 747 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
.+..++..+...++|.+|...|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456667777777777777777666653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.23 E-value=3.3 Score=48.15 Aligned_cols=127 Identities=15% Similarity=0.027 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhC------CC-CCCHH---
Q 048751 645 GSLINGFAATGK-VEEALQYFRMMRECGLWANQIVLTSLIKAYSKIG-CLEGAKQVYEKMKEM------EG-GPDTV--- 712 (1004)
Q Consensus 645 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~------~~-~~~~~--- 712 (1004)
..++..+.-.++ ++.|+.+|+++.+....-+......++..+...+ +--+|.+++.+..+. .. ..+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555666 6889999999988653222222223333332222 223456665554421 11 11111
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 713 -------ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 713 -------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
....=++.+...|+++.|+++-++.....|.+..+|..|+.+|...|+++.|+-.+.-+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11111244556788888888888888888888888888888888888888888777765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.97 E-value=2.5 Score=45.36 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL-----SGLLRDVIS 782 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 782 (1004)
..++..+...|++++|...+..+....|.+...|..+|.+|...|+..+|++.|+++.+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 45666777788888888888888888888888888888888888888888888777643 366666543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.47 E-value=3.8 Score=35.84 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=25.6
Q ss_pred hhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048751 866 LALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP 916 (1004)
Q Consensus 866 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 916 (1004)
+++.+++.++...+.........|+-++.+.|++++|.++.+.+++ .+|
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP 108 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HER 108 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCC
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCC
Confidence 4555555555543222333444455566666666666666666665 455
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.60 E-value=16 Score=31.52 Aligned_cols=65 Identities=6% Similarity=-0.080 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 709 PDTVASNTMISLYAELGM---VTEAESMFNDIREKGQV-DAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
|+..+--.+..++.+..+ ..+++.+++.+.+.+|. .-..+..|+-++.+.|++++|.+..+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344443344444444433 23445555554444432 233444444555555555555555555554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.84 E-value=53 Score=35.66 Aligned_cols=95 Identities=13% Similarity=0.182 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--H
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKG--QVD----AVSFAAMMYLYKTMGMLDEAIDAAEEMKL----SGLLRD--V 780 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~ 780 (1004)
....|...|...|++.+|..++..+.... ..+ ...+...+..|...+++..|..++.++.. ....|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34568889999999999999999986532 222 34677788899999999999999888642 222233 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 781 ISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 781 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
..+...+..+...+++.+|...|.+..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456777778888999999998888874
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.80 E-value=6.1 Score=35.65 Aligned_cols=116 Identities=9% Similarity=-0.095 Sum_probs=60.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKG--QVD-------AVSFAAMMYLYKTMGMLDEAIDAAEEMKLS--GLLRDVISYNQ 785 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ 785 (1004)
-+..+...|.++.|+-+.+.+.... .++ ..++..+++++...|++..|...|++.+.. .+.....++..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3566777788888888877755433 122 124566777777888888888877776532 11111111111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhcc
Q 048751 786 VMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEV 845 (1004)
Q Consensus 786 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 845 (1004)
+. ....... ......+...-..+..++.+.|++.+|+..++....+.
T Consensus 106 ~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 106 TG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 10 0000000 01122233344446667777888888888777755443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.70 E-value=11 Score=32.45 Aligned_cols=74 Identities=5% Similarity=-0.071 Sum_probs=56.8
Q ss_pred cCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 048751 740 KGQVDAVSFAAMMYLYKTMGML---DEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDN 815 (1004)
Q Consensus 740 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 815 (1004)
.+.+++.+-..+++++.+..+. .+++.+++++.+.+..-....+..|.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 4567888888899999988764 46888999888866222355667778899999999999999999875 45654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.41 E-value=7.7 Score=35.00 Aligned_cols=118 Identities=8% Similarity=-0.005 Sum_probs=67.4
Q ss_pred HHHHHHhhhHhhhhHHHHHHhhhc-cCCc-------hhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-CHHHHHHHH
Q 048751 856 SVYSVVGLNALALGTCETLIKAEA-YLDS-------FIYNVAIYAFKSSGKNDKALNTFMKMLDQ-GLEP-DIVTCINLV 925 (1004)
Q Consensus 856 ~l~~~~~~~~~A~~~~~~~~~~~~-~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p-d~~t~~~l~ 925 (1004)
..+...+.++.|+-..+.++.... +++. .++..++.++...|++.+|...|++.++. ..-| +..+...+.
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 345667777777777777665532 2232 15677788888888888888888887642 1112 221111110
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCC
Q 048751 926 GCYGKAGLVEGVKRIHSQLKYGKMEPNENLFKAVIDAYRNANREDLADLACQEMRTAFESP 986 (1004)
Q Consensus 926 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 986 (1004)
....... .....++.++-.-+..||.+.|++++|...++.++.+..++
T Consensus 108 ----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 108 ----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp ----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred ----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 0000000 01233455665567888899999999999888877665543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.92 E-value=28 Score=30.45 Aligned_cols=65 Identities=6% Similarity=-0.080 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 709 PDTVASNTMISLYAELGM---VTEAESMFNDIREKGQV-DAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
|+..+--.+..++.+... ..+++.+++.+....|. .-.....|+-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444445554443 33455555555554442 223444455555566666666666555555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1004 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 1e-08
Identities = 55/388 (14%), Positives = 111/388 (28%), Gaps = 16/388 (4%)
Query: 375 GNLSEAEALFCMMEESRISPD-TKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVT 433
G+ AE M+ R PD T +L S++ ++ + + + P
Sbjct: 13 GDFEAAERHC--MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAE 68
Query: 434 QRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQ 493
+ L + + + + + G + A +
Sbjct: 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128
Query: 494 LDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYD 553
K L E + + Q V ++ + +
Sbjct: 129 QYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 554 KAFSLFKVMKNLGTWPDEC-TYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSV 612
A F+ K + P+ Y +L + + +AV + ++
Sbjct: 187 LAIHHFE--KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNL 243
Query: 613 IAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGL 672
Y G + A+D + Y +L N G V EA +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 673 WANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTV-ASNTMISLYAELGMVTEAE 731
+ L + G +E A ++Y K E+ P+ A + + S+ + G + EA
Sbjct: 303 THADSLNN-LANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEAL 359
Query: 732 SMFNDIREKGQVDAVSFAAMMYLYKTMG 759
+ + A +++ M K M
Sbjct: 360 MHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.003
Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 8/212 (3%)
Query: 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTV-ASNTMISLYAELGMVTEAESMFNDIREK 740
L ++ G + A +EK ++ P+ + A + ++ E + A + +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232
Query: 741 GQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCG 800
AV + +Y G++D AID + +Y + G + +
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRA-IELQPHFPDAYCNLANALKEKGSVAEA- 290
Query: 801 ELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIIT--SVY 858
E + + + L I ++ G EAV+ + + EV P + A SV
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL-EVFPEFAAAHSNLASVL 349
Query: 859 SVVGLNALALGTCETLIKAEAYLDSFIYNVAI 890
G AL + I+ N+
Sbjct: 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1004 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.15 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.02 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.92 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.45 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.39 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.32 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.31 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.26 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.25 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.22 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.2 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.2 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.16 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.09 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.07 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.02 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.02 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.01 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.01 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.86 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.85 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.85 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.81 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.76 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.75 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.73 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.63 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.61 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.52 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.45 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.4 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.29 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.01 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.84 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.5 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.59 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.28 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.66 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.66 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.61 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.14 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.01 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 85.84 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3e-20 Score=204.50 Aligned_cols=294 Identities=14% Similarity=0.072 Sum_probs=142.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCC
Q 048751 472 VMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKL 551 (1004)
Q Consensus 472 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 551 (1004)
+...+.+.|++++|.+.+++++...|.++.++..++.+|.+.|++++|+..|+++.+. .+.+..+|..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhcc
Confidence 4455666666666666666666666666666666666666666666666666665553 33445555556666666666
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 048751 552 YDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHE 631 (1004)
Q Consensus 552 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 631 (1004)
+++|+..+....+.... +....... .......+....+......
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~ 126 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINL-----------------------------------AAALVAAGDMEGAVQAYVS 126 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHH-----------------------------------HHHHHHHSCSSHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccc-----------------------------------ccccccccccccccccccc
Confidence 66666665555543322 22222222 2222222222222222222
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 048751 632 MRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDT 711 (1004)
Q Consensus 632 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 711 (1004)
..... .................+....+...+........ .+...+..+...+...|++++|...++...+..+. +.
T Consensus 127 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~ 203 (388)
T d1w3ba_ 127 ALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FL 203 (388)
T ss_dssp HHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred ccccc-cccccccccccccccccchhhhhHHHHHHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cH
Confidence 22221 11222222233333334444444444444333221 23334444444444444445554444444443222 33
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFA 791 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 791 (1004)
.++..+...+...|++++|...+++.....+.+...+..++.++.+.|++++|+..|+++.+... .+..+|..+...+.
T Consensus 204 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555554321 12444555555555
Q ss_pred HcCCHHHHHHHHHHHH
Q 048751 792 TNGQLRQCGELLHEML 807 (1004)
Q Consensus 792 ~~g~~~~A~~~~~~~~ 807 (1004)
..|++++|...++...
T Consensus 283 ~~~~~~~A~~~~~~~~ 298 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhh
Confidence 5555555555555443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3e-20 Score=204.51 Aligned_cols=361 Identities=14% Similarity=0.108 Sum_probs=240.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCH
Q 048751 437 ILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLW 516 (1004)
Q Consensus 437 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 516 (1004)
+...+.+.|++++|++.++++.+.... +...+..++.++...|++++|...+++++...|....++..++.+|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 456778999999999999999876432 5677888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 048751 517 AEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAE 596 (1004)
Q Consensus 517 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 596 (1004)
++|...+...... .+.+...+..........+....+............. ...............+....+...+..
T Consensus 84 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccc--ccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence 9999999998875 4555555555565666666666666666555544332 333444455555566666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048751 597 MQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQ 676 (1004)
Q Consensus 597 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 676 (1004)
..... +.+...+..+...+...|+++.|...+++..... +-+...|..+...+...|++++|+..++.....+. .+.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHH
Confidence 55532 3345556666666666777777777776666542 23355666666666666666666666666655432 344
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 677 IVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 677 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
..+..+...+.+.|++++|...++++.+..+. +..++..+..++...|++++|++.++......|.+...+..++.++.
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 55555666666666666666666666554332 44555556666666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 757 TMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 757 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
..|++++|+..+++.++.. |+ ..++..+..++...|++++|...|++.+
T Consensus 317 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666666655532 33 4455555555555555555555555554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=6.3e-13 Score=141.07 Aligned_cols=269 Identities=13% Similarity=0.036 Sum_probs=174.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
....+.+.|++++|+..|+++++..+. +..+|..++.++...|++++|...|+++.+..|.+...|..++.+|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 455567778888888888887776543 5677777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhH
Q 048751 762 DEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSS 841 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 841 (1004)
++|++.++++.... |+.............. .+..........+...+...+|...++++
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 88888888877643 3211100000000000 00000000111112223344555555555
Q ss_pred hhccCCchh---hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C
Q 048751 842 YQEVKPYAS---EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-D 917 (1004)
Q Consensus 842 ~~~~~~~~~---~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d 917 (1004)
+...+.... ...++.++...|++++|+..+++++... |.+..+|..++.+|...|++++|++.|+++++ +.| +
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 239 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGY 239 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHH--Hhhcc
Confidence 544433221 1223445666777777777777777765 44778888999999999999999999999887 467 4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcC----------CCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 048751 918 IVTCINLVGCYGKAGLVEGVKRIHSQLKYG----------KMEPNENLFKAVIDAYRNANREDLADLA 975 (1004)
Q Consensus 918 ~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 975 (1004)
..++..++.+|.+.|++++|+..++++... ...-...+|..+..++...|+.+.+...
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 778888999999999999999998876431 0111124677788888888888766544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4.1e-12 Score=134.63 Aligned_cols=243 Identities=12% Similarity=-0.002 Sum_probs=164.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048751 541 VMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLG 620 (1004)
Q Consensus 541 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 620 (1004)
.....+.+.|++++|+..|+++.+..+. +..+|..+..++...|++++|...+.+.++.. +-+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3455677788888888888887776533 56677777777777777777777777776643 345566777777777777
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 621 QLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYE 700 (1004)
Q Consensus 621 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 700 (1004)
++++|.+.+++.... .|+............. ..+.......+..+...+.+.+|.+.+.
T Consensus 102 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRY--TPAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHh--ccchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 777777777777653 2321110000000000 0000011111223344456677777777
Q ss_pred HHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048751 701 KMKEMEG-GPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD 779 (1004)
Q Consensus 701 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 779 (1004)
...+..+ ..+..++..+...+...|++++|+..|++.....|.+..+|..++.+|...|++++|++.++++++.. |+
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh--hc
Confidence 7665443 34567777888888888888899888888888888888888888888888999999988888888754 44
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 780 -VISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 780 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
..+|..++.+|.+.|++++|+..|++.++
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66788888888888899888888888765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=9e-10 Score=114.85 Aligned_cols=221 Identities=10% Similarity=0.040 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM-VTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
.++.+...+.+.+.+++|+++++++++..+. +..+|+....++...|. +++|+..++++.+..|.+..+|..++.++.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 3444555555666666666666666665443 55566666666666553 666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHH
Q 048751 757 TMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVK 836 (1004)
Q Consensus 757 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 836 (1004)
..|++++|+..++++++... .+...|..+...+...|++++|+..++++++.+ +.+...+..+..++.+.+..
T Consensus 124 ~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~----- 196 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY----- 196 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS-----
T ss_pred hhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHcccc-----
Confidence 66666666666666666432 235666666666666666666666666665532 11233333333333333321
Q ss_pred HHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048751 837 QLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP 916 (1004)
Q Consensus 837 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 916 (1004)
...+.+++|++.+.++++.. |.+..+|+.+...+...| .++|.+.++...+....+
T Consensus 197 ----------------------~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 197 ----------------------NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp ----------------------CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTC
T ss_pred ----------------------chhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCc
Confidence 12234556777777777776 447788888877765544 577888888877632222
Q ss_pred -CHHHHHHHHHHHHh
Q 048751 917 -DIVTCINLVGCYGK 930 (1004)
Q Consensus 917 -d~~t~~~l~~~~~~ 930 (1004)
+...+..++.++..
T Consensus 253 ~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 253 SSPYLIAFLVDIYED 267 (315)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 45566666666643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=5.5e-09 Score=108.75 Aligned_cols=197 Identities=11% Similarity=0.055 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048751 607 LTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATG-KVEEALQYFRMMRECGLWANQIVLTSLIKA 685 (1004)
Q Consensus 607 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 685 (1004)
.+++.+...+.+.+.+++|+.+++++.+.+ +-+...|+....++...| ++++|+..++...+... -+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHH
Confidence 355566666777777788888887777753 334667777777777665 47777777777776543 456677777777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-----
Q 048751 686 YSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM----- 760 (1004)
Q Consensus 686 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 760 (1004)
+.+.|++++|+..++++.+..+. +..+|..++.++.+.|++++|+..++++.+.+|.+..+|+.++.++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 77777777777777777775544 667777777777777777777777777777777777777777777666655
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 761 -LDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 761 -~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
+++|+..+.++++..+ .+...|+.+...+.. ...+++.+.++...+
T Consensus 201 ~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 4677777777776542 245566655554433 334566666666644
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=3.7e-09 Score=107.16 Aligned_cols=96 Identities=13% Similarity=-0.002 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
++..+...|.+.|++++|+..|++.++..+. +..+|+.++.+|.+.|++++|+..|+++.+..|.+..++..++.+|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 3444455555555555555555555554332 445555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 048751 758 MGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 758 ~g~~~~A~~~~~~~~~~ 774 (1004)
.|++++|+..+++.++.
T Consensus 118 ~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhh
Confidence 55555555555555553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=4.6e-08 Score=104.04 Aligned_cols=295 Identities=12% Similarity=-0.009 Sum_probs=149.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHH
Q 048751 650 GFAATGKVEEALQYFRMMRECGLWAN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEG-GPD----TVASNTMISL 720 (1004)
Q Consensus 650 ~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~ 720 (1004)
.+...|++++|++++++..+.....+ ...+..+...+...|++++|...+++..+... .++ ...+..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34445555555555555444321111 12333444455555555555555554433111 001 1223344455
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-----C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHH
Q 048751 721 YAELGMVTEAESMFNDIREKG-----Q---VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL----RDVISYNQVMA 788 (1004)
Q Consensus 721 ~~~~g~~~~A~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~ 788 (1004)
+...|++..|...+....... + .....+..++..+...|+++.+...+.+....... ....++.....
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 556666666666665544321 1 11224455566666667777776666666543211 12344555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHC--CCCCChh----hHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHh
Q 048751 789 CFATNGQLRQCGELLHEMLTQ--KLLPDNG----TFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVG 862 (1004)
Q Consensus 789 ~~~~~g~~~~A~~~~~~~~~~--~~~p~~~----~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 862 (1004)
.+...+.+.++...+.+.... ....... .+......+...|+.++|...++......+...
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------- 247 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN------------- 247 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC-------------
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccc-------------
Confidence 666677777776666655321 1111111 122233334444555555554444433222110
Q ss_pred hhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChhHH
Q 048751 863 LNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLD----QGLEPD-IVTCINLVGCYGKAGLVEGV 937 (1004)
Q Consensus 863 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~pd-~~t~~~l~~~~~~~g~~~~A 937 (1004)
+.....+..++.++...|++++|...+++++. .+..|+ ..++..+..++.+.|++++|
T Consensus 248 -----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (366)
T d1hz4a_ 248 -----------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 310 (366)
T ss_dssp -----------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred -----------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 11223455677778888888888888877763 244453 44677777888888888888
Q ss_pred HHHHHHHHc----CCCCC----cHHHHHHHHHHHHhcCChhHHHH
Q 048751 938 KRIHSQLKY----GKMEP----NENLFKAVIDAYRNANREDLADL 974 (1004)
Q Consensus 938 ~~~~~~~~~----~~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 974 (1004)
.+.+++... .+... .......++..+...|+.+++..
T Consensus 311 ~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 311 QRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 888776532 11110 11233445556667777776644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=2.9e-08 Score=105.65 Aligned_cols=268 Identities=10% Similarity=-0.018 Sum_probs=135.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhhcCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 048751 506 IIDVYAEKGLWAEAETVFYGKRDLVGQKKS---VVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGT-WPD----ECTYNSL 577 (1004)
Q Consensus 506 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~l 577 (1004)
.+.++...|++++|+..+++..+..+..++ ...++.+...|...|++++|+..|++..+... .++ ..++..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 344455555555555555555442111111 22445555556666666666666665543210 011 1233444
Q ss_pred HHHHHcCCChHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC----CCCCHHHHHH
Q 048751 578 VQMFAGGDLMGQAVDLLAEMQG----AGFKPQ---CLTFSSVIAAYARLGQLSNAVDLFHEMRRAG----VEPNEVVYGS 646 (1004)
Q Consensus 578 l~~~~~~~~~~~a~~~~~~m~~----~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~ 646 (1004)
...+...|++..+...+..... .+.... ...+..+...+...|+++.+...+....... .......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 4455566666666665555432 111111 1234445556666777777777766665431 1112344455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHH
Q 048751 647 LINGFAATGKVEEALQYFRMMRECG--LWAN----QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGP---DTVASNTM 717 (1004)
Q Consensus 647 li~~~~~~g~~~~A~~~~~~m~~~g--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l 717 (1004)
+...+...++...+...+....... .... ...+..+...+...|+++.|...++......... ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 5556666666666666665543211 1111 1233444455566667777766666654433221 22344455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 718 ISLYAELGMVTEAESMFNDIREKG------QVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 718 ~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
..++...|++++|...++++.... +....++..++.+|...|++++|++.+++.++
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666677777766666654321 22334556666666666666666666665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=9.1e-10 Score=116.58 Aligned_cols=233 Identities=6% Similarity=0.001 Sum_probs=147.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHH
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM--LDEAIDAAEEMKLSGLLRDVISYN-QVMACFATNGQLRQC 799 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A 799 (1004)
..|++++|+..++.+.+..|.+...|..++.++...++ +++|+..++++.+... ++...+. .....+...|.+++|
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHH
Confidence 33446667777777777777777777776666666553 6677777777766432 2344433 333455556777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhc
Q 048751 800 GELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEA 879 (1004)
Q Consensus 800 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~ 879 (1004)
+..+++++... +-+...+..+..++.+.|+.++|...++...+..+.. ......+...+..+++...+.+.+...
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~- 238 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR- 238 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence 77776665432 2234455566666666666666654444433332221 111122344555667777777777765
Q ss_pred cCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCc-HHHHH
Q 048751 880 YLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLKYGKMEPN-ENLFK 957 (1004)
Q Consensus 880 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 957 (1004)
+.+...+..++..+...|+.++|+..+.+..+ ..| +..++..++.++...|+.++|..+++++.. ++|+ ...|.
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~ 314 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLD 314 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHH
Confidence 44666777788888888888888888887765 455 456778888888888888888888888763 4675 55677
Q ss_pred HHHHHHHh
Q 048751 958 AVIDAYRN 965 (1004)
Q Consensus 958 ~l~~~~~~ 965 (1004)
.|...+.-
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 77666553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=1.7e-09 Score=114.49 Aligned_cols=231 Identities=7% Similarity=-0.082 Sum_probs=147.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHhcCCHHHHH
Q 048751 689 IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGM--VTEAESMFNDIREKGQVDAVSFA-AMMYLYKTMGMLDEAI 765 (1004)
Q Consensus 689 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~ 765 (1004)
.|.+++|+.+++.+.+..++ +...|..+..++...+. +++|...++++.+..|.+...+. .....+...+.+++|+
T Consensus 86 ~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHH
Confidence 34456666666666654433 55555555555555443 66777777777776666666554 3445666667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhcc
Q 048751 766 DAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEV 845 (1004)
Q Consensus 766 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 845 (1004)
..++++++.++ -+...|+.+...+...|++++|...+.+.... .|+ .......+...+..+++...+...+...
T Consensus 165 ~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~ 238 (334)
T d1dcea1 165 AFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (334)
T ss_dssp HHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence 77776666542 34566666666666766666554444332211 111 1112222334455566777777666665
Q ss_pred CCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048751 846 KPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD-IVTCIN 923 (1004)
Q Consensus 846 ~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ 923 (1004)
+.... ....+..+...++..+|++.+.+.++..+ .+..+|..++.+|...|+.++|++.|+++++ +.|+ ...|..
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~ 315 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDD 315 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHH
Confidence 54433 34445667788889999999998888763 3678899999999999999999999999998 6885 556666
Q ss_pred HHHHHH
Q 048751 924 LVGCYG 929 (1004)
Q Consensus 924 l~~~~~ 929 (1004)
|...+.
T Consensus 316 L~~~~~ 321 (334)
T d1dcea1 316 LRSKFL 321 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=5.7e-08 Score=100.84 Aligned_cols=188 Identities=12% Similarity=0.022 Sum_probs=147.5
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 620 GQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVY 699 (1004)
Q Consensus 620 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 699 (1004)
+..++|..+|++..+...+.+...|..++..+...|+++.|..+|+.+.+........+|..++..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888888654455677788888888889999999999999887654444567888888888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C
Q 048751 700 EKMKEMEGGPDTVASNTMISL-YAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL-L 777 (1004)
Q Consensus 700 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 777 (1004)
+.+.+.... +...|...+.. +...|+.+.|..+|+.+.+..|.++..|...+..+...|+++.|..+|++...... .
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 998876654 33444444433 34458899999999999998888999999999999999999999999999887642 3
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 778 RD--VISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 778 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
|+ ...|...+..-...|+.+.+.++++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 45788888877888999999999888854
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=7e-09 Score=105.01 Aligned_cols=220 Identities=13% Similarity=-0.075 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048751 693 EGAKQVYEKMKEMEGGP---DTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAE 769 (1004)
Q Consensus 693 ~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 769 (1004)
+.++.-++++....... ...++..++.+|.+.|++++|+..|++..+..|.++.+|..++.+|...|++++|+..|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 44444455554432211 223566677888888888888888888888888888888888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCch
Q 048751 770 EMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYA 849 (1004)
Q Consensus 770 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 849 (1004)
++++..+ .+..++..+..++...|++++|...+++.++.. +.+......+.....+.+....+...........+...
T Consensus 96 ~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (259)
T d1xnfa_ 96 SVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW 173 (259)
T ss_dssp HHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred HHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh
Confidence 8888542 236678888888888888888888888887643 22333333334444444444444333333333222222
Q ss_pred hhhHHHHH---HHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 850 SEAIITSV---YSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 850 ~~~~~~~l---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
........ ....+....+...+....... +....+|..++..|...|++++|++.|++.+. ..|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 241 (259)
T d1xnfa_ 174 GWNIVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVH 241 (259)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCC
Confidence 22222111 122333444444444333332 22345788899999999999999999999987 5675
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.92 E-value=7.8e-08 Score=99.75 Aligned_cols=189 Identities=9% Similarity=-0.039 Sum_probs=142.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048751 375 GNLSEAEALFCMMEESRISPDTKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVI 454 (1004)
Q Consensus 375 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 454 (1004)
+..++|..+|++.++...+-+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45678888999888754444567788888888899999999999999887544334567888888888899999999999
Q ss_pred HHHHhCCCCCCCCcHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCC
Q 048751 455 IEMEKCGLHIDEHSVPGVMKM-YINEGLLHQAKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQK 533 (1004)
Q Consensus 455 ~~m~~~g~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 533 (1004)
+.+.+.+.. +...+...+.. +...|+.+.|..+|+.++...+.++..+...++.+.+.|+.+.|+.+|++.....+..
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 998876533 33334333333 3345788888888888888888888888888888888888888888888876644333
Q ss_pred C--CHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048751 534 K--SVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564 (1004)
Q Consensus 534 ~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 564 (1004)
| ....|...+..-...|+.+.+.++++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 245677777777777888888888887755
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=2.1e-06 Score=81.17 Aligned_cols=127 Identities=18% Similarity=0.123 Sum_probs=104.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHH
Q 048751 683 IKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLD 762 (1004)
Q Consensus 683 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 762 (1004)
...+...|+++.|++.|.++ .+|+..+|..+..+|...|++++|++.|++..+.+|.++.+|..++.+|.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 44567889999999988764 24677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCC--------------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048751 763 EAIDAAEEMKLSGLL--------------RD-VISYNQVMACFATNGQLRQCGELLHEMLTQKLLP 813 (1004)
Q Consensus 763 ~A~~~~~~~~~~~~~--------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 813 (1004)
+|++.|++.+..... .+ ..++..+..++.+.|++++|.+.+.+.+.....+
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999998753210 11 3456677888999999999999999887654443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=2.7e-06 Score=72.78 Aligned_cols=89 Identities=15% Similarity=0.080 Sum_probs=46.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 048751 684 KAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 684 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
..+.+.|++++|+..|+++++..+. +...|..+..+|.+.|++++|+..++++.+.+|.++..|..++.++...|++++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 3444455555555555555443332 444455555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 048751 764 AIDAAEEMKL 773 (1004)
Q Consensus 764 A~~~~~~~~~ 773 (1004)
|+..|++.++
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=6.7e-06 Score=83.78 Aligned_cols=208 Identities=14% Similarity=0.080 Sum_probs=120.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 048751 726 MVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS----GLLRD-VISYNQVMACFATNGQLRQCG 800 (1004)
Q Consensus 726 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~ 800 (1004)
++++|.++|.+ .+.+|...|++++|++.|.++.+. +-.++ ..+|..+..+|.+.|++++|.
T Consensus 32 ~~~~Aa~~y~~--------------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~ 97 (290)
T d1qqea_ 32 KFEEAADLCVQ--------------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (290)
T ss_dssp HHHHHHHHHHH--------------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHH--------------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46667666554 456788889999999998887652 21122 457888888888999999998
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchhhhHHHHHH-HHHhhhHhhhhHHHHHHhhhc
Q 048751 801 ELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYASEAIITSVY-SVVGLNALALGTCETLIKAEA 879 (1004)
Q Consensus 801 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~A~~~~~~~~~~~~ 879 (1004)
..+++.... +...|....+...+.. ++.++ ...|++++|++.++++++...
T Consensus 98 ~~~~~a~~~---------------~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~~A~~~~~~A~~l~~ 149 (290)
T d1qqea_ 98 DSLENAIQI---------------FTHRGQFRRGANFKFE-------------LGEILENDLHDYAKAIDCYELAGEWYA 149 (290)
T ss_dssp HHHHHHHHH---------------HHHTTCHHHHHHHHHH-------------HHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHH---------------hhhcccchhHHHHHHH-------------HHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 888876432 1122222222211111 01111 123444444444444443311
Q ss_pred cC-----CchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C----C-HHHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 048751 880 YL-----DSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLE-P----D-IVTCINLVGCYGKAGLVEGVKRIHSQLKYGK 948 (1004)
Q Consensus 880 ~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p----d-~~t~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 948 (1004)
.. -..++..++..|...|++++|++.|+++...... + . ...+..++.++...|+.+.|.+.+++...
T Consensus 150 ~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~-- 227 (290)
T d1qqea_ 150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS-- 227 (290)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--
T ss_pred hcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--
Confidence 11 1235777888899999999999999988763111 1 1 12334555566778899999888888753
Q ss_pred CCCc------HHHHHHHHHHHHh--cCChhHHHHHHH
Q 048751 949 MEPN------ENLFKAVIDAYRN--ANREDLADLACQ 977 (1004)
Q Consensus 949 ~~p~------~~~~~~l~~~~~~--~g~~~~A~~~~~ 977 (1004)
+.|. ......++.++.. .+++++|...++
T Consensus 228 ~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2332 2234556666544 233556655554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=8.6e-06 Score=76.72 Aligned_cols=124 Identities=10% Similarity=-0.012 Sum_probs=82.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048751 650 GFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTE 729 (1004)
Q Consensus 650 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 729 (1004)
.+...|+++.|++.|..+ ..|+..+|..+..++...|++++|++.|++.++.++. +...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence 445566666666666543 2355566666666666777777777777766665543 55566666677777777777
Q ss_pred HHHHHHHHHHcCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048751 730 AESMFNDIREKGQV----------------DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLR 778 (1004)
Q Consensus 730 A~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 778 (1004)
|.+.|++.....+. ...++..++.++...|++++|++.+++..+....+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 77777766553221 13567788889999999999999999888755433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=5.3e-06 Score=75.66 Aligned_cols=93 Identities=13% Similarity=0.030 Sum_probs=64.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 048751 682 LIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGML 761 (1004)
Q Consensus 682 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 761 (1004)
..+.|.+.|++++|+..|+++++..+. +...|..+..+|...|++++|+..|+++.+..|.+..+|..++.++...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 344566677777777777777665543 6666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHCC
Q 048751 762 DEAIDAAEEMKLSG 775 (1004)
Q Consensus 762 ~~A~~~~~~~~~~~ 775 (1004)
++|+..+++.....
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 77777777777643
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=5.5e-06 Score=70.77 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=87.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048751 716 TMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQ 795 (1004)
Q Consensus 716 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 795 (1004)
.-+..+.+.|++++|+..|+++.+..|.++..|..++.+|...|++++|+..+++.++.++ .+...|..+..++...|+
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccC
Confidence 3567788999999999999999999999999999999999999999999999999998764 468899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChh
Q 048751 796 LRQCGELLHEMLTQKLLPDNG 816 (1004)
Q Consensus 796 ~~~A~~~~~~~~~~~~~p~~~ 816 (1004)
+++|+..|++.++. .|+..
T Consensus 87 ~~~A~~~~~~a~~~--~p~~~ 105 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH--EANNP 105 (117)
T ss_dssp HHHHHHHHHHHHTT--CTTCH
T ss_pred HHHHHHHHHHHHHh--CCCCH
Confidence 99999999999854 45543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1e-05 Score=73.71 Aligned_cols=120 Identities=14% Similarity=0.091 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 645 GSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 645 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
....+.|.+.|++++|+..|++.++..+ .+...|..+..+|...|++++|...|+.+++..+. +..+|..++.++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHc
Confidence 3445677888899999999988888754 57778888888889999999999999988876644 677888888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HhcCCHHHHHH
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLY--KTMGMLDEAID 766 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~ 766 (1004)
|++++|...++++....|.+...+..+..+. ...+.+++|+.
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988888888776655443 23333444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.31 E-value=4e-06 Score=80.11 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 048751 709 PDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVM 787 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 787 (1004)
|+...+...+..|.+.|++++|+..|+++.+..|.++.+|..++.+|.+.|++++|+..|+++++.. |+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHHH
Confidence 4455555566666777777777777777777667777777777777777777777777777766532 43 55666667
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 048751 788 ACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~~~ 807 (1004)
.+|...|++++|+..|++++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 77777777777777776654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.26 E-value=4.7e-06 Score=79.66 Aligned_cols=99 Identities=12% Similarity=-0.077 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 048751 674 ANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMY 753 (1004)
Q Consensus 674 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 753 (1004)
|+...+......+.+.|++++|+..|+++++..+. +...|..++.+|.+.|++++|+..|+++.+..|.++.+|..++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 56667777788888889999999999888876654 77788888999999999999999999999888989999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 048751 754 LYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 754 ~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+|...|++++|+..|+++.+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998876
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.25 E-value=4.5e-05 Score=77.38 Aligned_cols=171 Identities=11% Similarity=-0.037 Sum_probs=110.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-C----
Q 048751 326 TSTYNTLIDLYGKAGRLQDAANVFAEMLKS----GVAVD-TITFNTMIYTCGSHGNLSEAEALFCMMEESRISP-D---- 395 (1004)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-~---- 395 (1004)
...|......|...|++++|.+.|.+..+. +-+++ ..+|..+..+|.+.|++++|.+.++...+..... +
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 346888889999999999999999988653 22222 3578888889999999999999998775421111 1
Q ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCC--
Q 048751 396 TKTYNILLSLYAD-VGNINAALRYYWKIREV----GLFPD-SVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEH-- 467 (1004)
Q Consensus 396 ~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-- 467 (1004)
..++..+...|.. .|++++|++.|++..+. +-.+. ..++..+...+...|++++|+..++++..........
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 196 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh
Confidence 3455666666644 58899999888877542 11111 2346667777888888888888888877653322111
Q ss_pred ----cHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 048751 468 ----SVPGVMKMYINEGLLHQAKIIFKKCQLDG 496 (1004)
Q Consensus 468 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 496 (1004)
.+...+..+...|++..|...+++.....
T Consensus 197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 12233334445566666666665554433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.22 E-value=6.3e-06 Score=69.69 Aligned_cols=89 Identities=11% Similarity=0.024 Sum_probs=60.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048751 717 MISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQL 796 (1004)
Q Consensus 717 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 796 (1004)
++..+.+.|++++|+..|+++....|.++.+|..++.++.+.|++++|+..+++.++..+ .+..+|..+...|...|++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCCH
Confidence 455566677777777777777777777777777777777777777777777777766432 2356666677777777777
Q ss_pred HHHHHHHHHH
Q 048751 797 RQCGELLHEM 806 (1004)
Q Consensus 797 ~~A~~~~~~~ 806 (1004)
++|++.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=0.001 Score=65.80 Aligned_cols=112 Identities=16% Similarity=0.113 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCH
Q 048751 656 KVEEALQYFRMMRECGLWANQIVLTSLIKAYSK----IGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE----LGMV 727 (1004)
Q Consensus 656 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 727 (1004)
....+...+...... .+...+..|...+.. ..+...+...++...+.+ +......+...|.. ..++
T Consensus 125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred hhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence 344455555544443 234444444444443 234445555555554432 34444445444444 3466
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 048751 728 TEAESMFNDIREKGQVDAVSFAAMMYLYKT----MGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 728 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 775 (1004)
++|+..|++..+.+ ++.++..|+.+|.. ..+.++|.++|++..+.|
T Consensus 199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 77777777766654 45555666666654 335666777776666655
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.20 E-value=6.9e-06 Score=69.45 Aligned_cols=91 Identities=16% Similarity=-0.011 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 048751 681 SLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM 760 (1004)
Q Consensus 681 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 760 (1004)
.+...+.+.|++++|+..+++.++..+. +..+|..+..++.+.|++++|+..|+++.+..|.+..+|..++.+|...|+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 4566778899999999999999887654 788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 048751 761 LDEAIDAAEEMK 772 (1004)
Q Consensus 761 ~~~A~~~~~~~~ 772 (1004)
+++|++.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.16 E-value=0.00025 Score=70.54 Aligned_cols=61 Identities=15% Similarity=-0.027 Sum_probs=32.5
Q ss_pred CchhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 048751 882 DSFIYNVAIYAFKS----SGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGK----AGLVEGVKRIHSQLK 945 (1004)
Q Consensus 882 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~----~g~~~~A~~~~~~~~ 945 (1004)
+..+...|+..|.. ..+.++|+..|++..+.| ++..+..|..++.+ ..+.++|.+++++..
T Consensus 177 ~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa 245 (265)
T d1ouva_ 177 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 245 (265)
T ss_dssp CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence 44555555555544 345666666666666543 33444455555543 225556666666554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=1e-05 Score=69.24 Aligned_cols=100 Identities=11% Similarity=0.086 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM---LDEAIDAAEEMKLSGLLRD-VISYNQVMACF 790 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 790 (1004)
..+++.+...+++++|++.|++....+|.++.++..++.++.+.++ +++|+.+++++...+..|+ ..+|..+..+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 3567778888999999999999999999999999999999987554 4569999999887654344 34778888999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChh
Q 048751 791 ATNGQLRQCGELLHEMLTQKLLPDNG 816 (1004)
Q Consensus 791 ~~~g~~~~A~~~~~~~~~~~~~p~~~ 816 (1004)
.+.|++++|+..|+++++. .|+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 9999999999999999864 46543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=1.6e-06 Score=96.08 Aligned_cols=267 Identities=10% Similarity=-0.023 Sum_probs=143.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 694 GAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 694 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
+|.+.++++.+.... ....+..+..++...|++++| |+++...+|.....++.....+ ...+..+++.++...+
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcc
Confidence 677888887764322 223455677778888888776 7777766543333332222111 1124567777777766
Q ss_pred CCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh
Q 048751 774 SGLLRDVISYNQVMA--CFATNGQLRQCGELLHEMLTQKLLP-DNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS 850 (1004)
Q Consensus 774 ~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 850 (1004)
....++..-...... .....+.++.|+..+.+.. ++.| +...+..+...+.+.|+.++|...++..+...+. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~--~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~ 154 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF--NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ-HC 154 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHHHH-HH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-HH
Confidence 543344322222111 2233455556555555443 2333 3445666777788888888888877776654432 22
Q ss_pred hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048751 851 EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPDIVTCINLVGCYGK 930 (1004)
Q Consensus 851 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l~~~~~~ 930 (1004)
...++.++...+++++|+..|+++++.. |.+..+|+.|+..|...|+..+|+..|.+.+.. -.|-+.++.+|...+.+
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~-~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHH
Confidence 4456778888999999999999999986 457889999999999999999999999999873 13467788888877765
Q ss_pred cCChhHHHHHHHHHHcCCCCCc-H---HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 931 AGLVEGVKRIHSQLKYGKMEPN-E---NLFKAVIDAYRNANREDLADLACQEMR 980 (1004)
Q Consensus 931 ~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 980 (1004)
.....++. ..... . ..+-.+...+...+..++..++.+++.
T Consensus 233 ~~~~~~~~---------~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~ 277 (497)
T d1ya0a1 233 ALESRDEV---------KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277 (497)
T ss_dssp HTTSCCCC---------CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred hhhhhhhh---------ccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence 54332211 11111 1 223344445556666766666655544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.5e-05 Score=68.07 Aligned_cols=103 Identities=6% Similarity=-0.003 Sum_probs=56.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 048751 646 SLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGC---LEGAKQVYEKMKEMEGGPDT-VASNTMISLY 721 (1004)
Q Consensus 646 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~ 721 (1004)
.+++.+...+++++|.+.|+.....++ .+..++..+..++.+.++ +++|+.+++++...+..|+. .++..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 345555555666666666666655443 345555555555554333 33466666665554433221 2455556666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFA 749 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 749 (1004)
.+.|++++|++.|+++.+..|.+..+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~ 110 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQNNQAKE 110 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhCcCCHHHHH
Confidence 6666666666666666666665555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=8.8e-05 Score=67.96 Aligned_cols=126 Identities=10% Similarity=0.011 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLY 721 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (1004)
..+....+.+.+.|++++|+..|.+.++....... ....-......+ -..+|+.+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHH
Confidence 34455566777777777777777776653110000 000000001111 123566688889
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACF 790 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 790 (1004)
.+.|++++|+..++.+++..|.++.+|..++.+|...|++++|+..|+++++.. |+ ......+....
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998855 54 44444444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=8.9e-05 Score=67.92 Aligned_cols=135 Identities=10% Similarity=0.016 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 607 LTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAY 686 (1004)
Q Consensus 607 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 686 (1004)
..+......+.+.|++++|+..|.+..... |... +....-......+. ..+|..+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~------------~~~~~~~~~~~~~~-------~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYES------------SFSNEEAQKAQALR-------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCC------------CCCSHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcc------------ccchHHHhhhchhH-------HHHHHHHHHHH
Confidence 445566778999999999999999987641 1100 00000001111111 13567788889
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 048751 687 SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
.+.|++++|+..++..++..+. ++.++..++.+|...|++++|+..|+++.+..|.+..+...+..+....+...+
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887654 788888999999999999999999999999999998888877776655544443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=0.0061 Score=61.33 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=82.5
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHhcccccccccccccccccCCCCcchhhHHHhHHHHhcCCCCccccchhhcc
Q 048751 236 FPDEVTMNTVVRVLKEVGEFDSADRFYKDWCLGRLELDDLELDSTDDLGSMPVSFKHFLSTELFRTGGRNPISRNMGLLD 315 (1004)
Q Consensus 236 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1004)
.|+..--..+++.|.+.|.++.|..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~-------------------------------------------------- 40 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------------------------------------------- 40 (336)
T ss_dssp CC----------------CTTTHHHHHHHT--------------------------------------------------
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhC--------------------------------------------------
Confidence 456666666777788888888888888753
Q ss_pred cCCCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 048751 316 MGNSVRKPRLTSTYNTLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPD 395 (1004)
Q Consensus 316 ~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~ 395 (1004)
.-|..++..+.+.++++.|.+++.+. -+..+|..+..++.......-| .+.......+
T Consensus 41 -----------~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~ 98 (336)
T d1b89a_ 41 -----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVH 98 (336)
T ss_dssp -----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTC
T ss_pred -----------CCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcC
Confidence 12677778888888888888877544 1556777777777766655443 2222223345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 048751 396 TKTYNILLSLYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRN 445 (1004)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 445 (1004)
......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 99 ~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 99 ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 555567888888888888888888876543 2456677788888887754
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=5.6e-05 Score=65.47 Aligned_cols=96 Identities=9% Similarity=0.119 Sum_probs=77.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHHH
Q 048751 714 SNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLL-RD-----VISYNQVM 787 (1004)
Q Consensus 714 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-----~~~~~~l~ 787 (1004)
+..+...+.+.|++++|+..|++.++.+|.+..+|..++.+|...|++++|+..++++++.... ++ ..+|..+.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999999999999999999999999999999888763210 11 24677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 048751 788 ACFATNGQLRQCGELLHEMLTQ 809 (1004)
Q Consensus 788 ~~~~~~g~~~~A~~~~~~~~~~ 809 (1004)
..+...+++++|+..|++.+..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 8888888999999998887653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.86 E-value=0.0091 Score=60.04 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048751 570 DECTYNSLVQMFAGGDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLIN 649 (1004)
Q Consensus 570 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 649 (1004)
|..-...+..-|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. -+..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 333333444445555555555555544332 444555555555555555544332 13445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048751 650 GFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAEL 724 (1004)
Q Consensus 650 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 724 (1004)
.+.+......| .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|++.
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 55554443322 1112222234444445555555555555555555554432 123445555555555553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.85 E-value=0.00019 Score=64.26 Aligned_cols=122 Identities=9% Similarity=0.003 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048751 642 VVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLY 721 (1004)
Q Consensus 642 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (1004)
..+..-.+.+.+.|++.+|+..|.+.+..-..... ............ ....+|..+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~-------------~~~~~~~~~~~~-------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-------------WDDQILLDKKKN-------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-------------CCCHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh-------------hhhHHHHHhhhh-------HHHHHHhhHHHHH
Confidence 34555666777777777777777776653110000 000000000000 0123566788889
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQ 785 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 785 (1004)
.+.|++++|+..++++.+.+|.+..+|..++.++...|++++|+..|++.++.. |+ ..+...
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~~~~~ 140 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNS 140 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999998854 54 444333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=5.6e-06 Score=91.46 Aligned_cols=267 Identities=10% Similarity=-0.004 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 048751 658 EEALQYFRMMRECGLWAN-QIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTV-ASNTMISLYAELGMVTEAESMFN 735 (1004)
Q Consensus 658 ~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 735 (1004)
-+|.++|++..+.. |+ ...+..+..++...|++++| +++++..+ |+.. ..+... .+.+ ..+..+.+.++
T Consensus 3 ~eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~-~Lw~-~~y~~~ie~~r 73 (497)
T d1ya0a1 3 LQSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQ-DLWN-HAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHH-HHHH-HHTHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHH-HHHH-HHHHHHHHHHH
Confidence 36889999887642 33 33556677778888888776 66665532 2111 111111 1111 12456677777
Q ss_pred HHHHcCC-CC-HHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048751 736 DIREKGQ-VD-AVS-FAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLL 812 (1004)
Q Consensus 736 ~~~~~~~-~~-~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 812 (1004)
...+... ++ ... ...+...+...+.++.|+..+.+.....+ ++...+..+...+.+.|+.++|...+.+.....
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 7665442 22 111 12223334445667777766665554322 346678888888999999999998888765421
Q ss_pred CChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCCchh-hhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHH
Q 048751 813 PDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKPYAS-EAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIY 891 (1004)
Q Consensus 813 p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 891 (1004)
| ..++..+...+...|++++|+.+++++++..|.... ...++.++...|++.+|+..|.+.+... +|.+.++++|+.
T Consensus 151 ~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 1 246777888999999999999999999999888765 5667888999999999999999999987 457888999988
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048751 892 AFKSSGKNDKALNTFMKMLDQGLEPD-IVTCINLVGCYGKAGLVEGVKRIHSQL 944 (1004)
Q Consensus 892 ~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~l~~~~~~~g~~~~A~~~~~~~ 944 (1004)
.+.+..+..++.. .....++ ...+..+...+......+...++.+.+
T Consensus 229 ~~~~~~~~~~~~~------~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 229 ALSKALESRDEVK------TKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHHHHTTSCCCCC------SSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred HHHHhhhhhhhhc------cccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 8765443322110 0000011 224455555566677777666665544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.00011 Score=63.40 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HHHHHH
Q 048751 679 LTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDA-------VSFAAM 751 (1004)
Q Consensus 679 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l 751 (1004)
+..+...+.+.|++++|+..|.+.++.++. +..++..+..+|.+.|++++|+..++++.+..|.+. .+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 445666777778888888888777776543 667777778888888888888888888776654332 356667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 048751 752 MYLYKTMGMLDEAIDAAEEMKLSG 775 (1004)
Q Consensus 752 ~~~~~~~g~~~~A~~~~~~~~~~~ 775 (1004)
+..+...+++++|+..|++.....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC
Confidence 777888888888888888877643
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.81 E-value=0.00025 Score=63.46 Aligned_cols=129 Identities=9% Similarity=0.023 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048751 607 LTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAY 686 (1004)
Q Consensus 607 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 686 (1004)
..+......+.+.|++.+|+..|.+....- +... ... +... ...... ....+|..+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~-~~~~--~~~~~~----~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWD-DQIL--LDKKKN----IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCC-CHHH--HHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhh-hHHH--HHhhhh----HHHHHHhhHHHHH
Confidence 345566788999999999999999988631 1100 000 0000 000000 1224677888899
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048751 687 SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYK 756 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 756 (1004)
.+.|++++|++.++.+++..+. +..+|..++.++...|++++|+..|++..+..|.+..+...+..+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999887643 78899999999999999999999999999999999888776665543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.76 E-value=0.00046 Score=62.79 Aligned_cols=80 Identities=13% Similarity=0.018 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFA 791 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 791 (1004)
+|..+..+|.+.|++++|+..++.+.+..|.+..+|..++.+|...|++++|+..|+++++.. |+ ......+.....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 456677888999999999999999999999999999999999999999999999999999854 54 455555544443
Q ss_pred HcC
Q 048751 792 TNG 794 (1004)
Q Consensus 792 ~~g 794 (1004)
..+
T Consensus 144 ~~~ 146 (168)
T d1kt1a1 144 KAK 146 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.75 E-value=0.00018 Score=65.86 Aligned_cols=126 Identities=6% Similarity=-0.015 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048751 643 VYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYA 722 (1004)
Q Consensus 643 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1004)
.+......+...|++++|++.|.++++. ...............+ . +.....+..+..++.
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~~-------~-~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGAKL-------Q-PVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHGGG-------H-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHHHh-------C-hhhHHHHHHHHHHHH
Confidence 3455566677777777777777766531 0000000111111000 0 113445667788888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 048751 723 ELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACF 790 (1004)
Q Consensus 723 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 790 (1004)
+.|++++|+..++++++..|.++.+|..++.+|...|++++|+..|+++++.. |+ ......+..+.
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVK 155 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 89999999999999998888889999999999999999999999999888854 44 44454444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.00025 Score=64.84 Aligned_cols=135 Identities=11% Similarity=0.100 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048751 608 TFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYS 687 (1004)
Q Consensus 608 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 687 (1004)
.+......+.+.|++++|+..|.+.... ...............+ . +.....+..+..++.
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~~----~----~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGAKL----Q----PVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHGGG----H----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHHHh----C----hhhHHHHHHHHHHHH
Confidence 3556677788999999999999887641 0000111111111100 0 123456777888999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 048751 688 KIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDE 763 (1004)
Q Consensus 688 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 763 (1004)
+.|++++|+..+..+++..+. +..+|..++.+|...|++++|+..|+++.+..|.+..+...+..+........+
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987654 788999999999999999999999999999999999888887776655444333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.63 E-value=0.00014 Score=64.26 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048751 725 GMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGM-----------LDEAIDAAEEMKLSGLLRDVISYNQVMACFATN 793 (1004)
Q Consensus 725 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 793 (1004)
+.+++|+..|+++.+.+|.+..+|..++.+|...|+ +++|.+.|++.++. .|+...|..-+..+
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~--- 129 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT--- 129 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH---
Confidence 345678888888888888888888888777766543 46677777777663 35544443333222
Q ss_pred CCHHHHHHHHHHHHHCC
Q 048751 794 GQLRQCGELLHEMLTQK 810 (1004)
Q Consensus 794 g~~~~A~~~~~~~~~~~ 810 (1004)
.+|.+++.+..+.|
T Consensus 130 ---~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 130 ---AKAPQLHAEAYKQG 143 (145)
T ss_dssp ---HTHHHHHHHHHHSS
T ss_pred ---HHHHHHHHHHHHHh
Confidence 24455555554443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.61 E-value=0.00092 Score=60.71 Aligned_cols=84 Identities=11% Similarity=0.068 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048751 678 VLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT 757 (1004)
Q Consensus 678 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (1004)
+|..+..+|.+.|++++|+..++..++..+. +..+|..++.++...|++++|+..|+++.+..|.+..+...+..+...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5666788889999999999999999887654 788888999999999999999999999999999999888887777665
Q ss_pred cCCHH
Q 048751 758 MGMLD 762 (1004)
Q Consensus 758 ~g~~~ 762 (1004)
.+...
T Consensus 145 ~~~~~ 149 (168)
T d1kt1a1 145 AKEHN 149 (168)
T ss_dssp HHHHH
T ss_pred HHhHH
Confidence 55443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=0.0004 Score=63.67 Aligned_cols=79 Identities=10% Similarity=0.016 Sum_probs=62.7
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH-----cCCCCCcHHHH
Q 048751 883 SFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEP-DIVTCINLVGCYGKAGLVEGVKRIHSQLK-----YGKMEPNENLF 956 (1004)
Q Consensus 883 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~ 956 (1004)
..++..++.++...|++++|+..++++++ ..| +...|..++.+|.+.|+.++|.+.|+++. ..|++|...+.
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 34677788899999999999999999988 677 68889999999999999999999888763 35888887664
Q ss_pred HHHHHHH
Q 048751 957 KAVIDAY 963 (1004)
Q Consensus 957 ~~l~~~~ 963 (1004)
...-.++
T Consensus 145 ~l~~~il 151 (179)
T d2ff4a2 145 ALNERIL 151 (179)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.52 E-value=0.00082 Score=61.50 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048751 713 ASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEM 771 (1004)
Q Consensus 713 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 771 (1004)
.+..++..+.+.|++++|+..++++.+..|.+...|..++.+|...|+.++|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44455566666666666666666666666666666666666666666666666666555
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.45 E-value=0.00014 Score=64.24 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=55.6
Q ss_pred HHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 048751 858 YSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSS----------GKNDKALNTFMKMLDQGLEP-DIVTCINLVG 926 (1004)
Q Consensus 858 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~p-d~~t~~~l~~ 926 (1004)
+.+.+.+++|++.++++++.. |.++.++..++.+|... +.+++|+..|+++++ +.| +..+|..+..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHH
Confidence 345556666666666666665 34666666666666533 334666777776666 456 4556666666
Q ss_pred HHHhcCC-----------hhHHHHHHHHHHcCCCCCcHHHHH
Q 048751 927 CYGKAGL-----------VEGVKRIHSQLKYGKMEPNENLFK 957 (1004)
Q Consensus 927 ~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~ 957 (1004)
+|...|. +++|.+.++++. .++|+-..|.
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal--~l~P~~~~~~ 123 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAV--DEQPDNTHYL 123 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHCTTCHHHH
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhccc--ccCCCHHHHH
Confidence 6654432 356666666654 3456644443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.40 E-value=0.00017 Score=70.88 Aligned_cols=121 Identities=13% Similarity=0.034 Sum_probs=63.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048751 687 SKIGCLEGAKQVYEKMKEMEGGPDTVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAID 766 (1004)
Q Consensus 687 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 766 (1004)
.+.|++++|+..+++.++..+. +...+..++..|+..|++++|.+.|+...+..|.+...+..+..++...+..+++..
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 3456666666666666665443 555666666666666666666666666666666666665555555544443333322
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048751 767 AAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLT 808 (1004)
Q Consensus 767 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 808 (1004)
........+..++...+......+...|+.++|.+.+.++.+
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 111111111111122333344455556666666666666543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.29 E-value=0.00013 Score=71.88 Aligned_cols=124 Identities=8% Similarity=-0.084 Sum_probs=84.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 048751 722 AELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISYNQVMACFATNGQLRQCG 800 (1004)
Q Consensus 722 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 800 (1004)
.+.|++++|+..+++..+..|.+...+..++..|+..|++++|+..++...+.. |+ ...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHHHH
Confidence 467999999999999999999999999999999999999999999999999854 66 445555555554444443332
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHcCCCcHHHHHHHHhHhhccCC
Q 048751 801 ELLHEMLTQKLLPDNGTFKVLFTILKKGGFPIEAVKQLQSSYQEVKP 847 (1004)
Q Consensus 801 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 847 (1004)
.-.......+-.++...+......+...|+.++|.+.++++.+..+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 21111110111112223333445566777888887777777665544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.01 E-value=0.0041 Score=55.35 Aligned_cols=90 Identities=16% Similarity=0.112 Sum_probs=56.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-
Q 048751 718 ISLYAELGMVTEAESMFNDIREKGQV------------DAVSFAAMMYLYKTMGMLDEAIDAAEEMKLS-----GLLRD- 779 (1004)
Q Consensus 718 ~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~- 779 (1004)
+..+.+.|++++|+..|++..+..+. ...+|+.++.+|...|++++|+..+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455667777777777776664421 1345677777777777777777777766541 11122
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048751 780 ----VISYNQVMACFATNGQLRQCGELLHEML 807 (1004)
Q Consensus 780 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 807 (1004)
...++.+..+|...|++++|+..|++.+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2245666777777777777777777764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.84 E-value=0.0034 Score=55.92 Aligned_cols=89 Identities=15% Similarity=0.031 Sum_probs=60.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCC-C----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CC---
Q 048751 685 AYSKIGCLEGAKQVYEKMKEMEGG-P----------DTVASNTMISLYAELGMVTEAESMFNDIREKG-------QV--- 743 (1004)
Q Consensus 685 ~~~~~g~~~~A~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~--- 743 (1004)
.+...|++++|+..|++.++.... | ....|+.+..+|.+.|++++|...+++..... +.
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666665542211 1 13456777888888888888888888776532 11
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048751 744 -DAVSFAAMMYLYKTMGMLDEAIDAAEEMKL 773 (1004)
Q Consensus 744 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 773 (1004)
...+++.++.+|...|++++|+..|++.++
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 233577889999999999999999988775
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.0072 Score=48.18 Aligned_cols=71 Identities=10% Similarity=-0.070 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 048751 681 SLIKAYSKIGCLEGAKQVYEKMKEME-----GGPD-TVASNTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAM 751 (1004)
Q Consensus 681 ~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 751 (1004)
.+...+.+.|++++|+..|++..+.. ..++ ..+++.+..++.+.|++++|+..++++.+..|.+..+++.+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 44445555555555555555443321 0111 23455555666666666666666666666655555555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.0093 Score=47.47 Aligned_cols=73 Identities=10% Similarity=-0.014 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 048751 712 VASNTMISLYAELGMVTEAESMFNDIREKGQ-------VDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRD-VISY 783 (1004)
Q Consensus 712 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 783 (1004)
..+-.++..+.+.|++++|+..|++..+..+ ....++..++.++.+.|++++|+..++++++.. |+ ..++
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P~~~~a~ 83 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--cCCHHHH
Confidence 3445677788888888888888888766532 124577788888888888888888888888744 55 4444
Q ss_pred HHH
Q 048751 784 NQV 786 (1004)
Q Consensus 784 ~~l 786 (1004)
+.+
T Consensus 84 ~Nl 86 (95)
T d1tjca_ 84 GNL 86 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.59 E-value=0.4 Score=40.27 Aligned_cols=80 Identities=13% Similarity=0.057 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHH
Q 048751 691 CLEGAKQVYEKMKEMEGGPDTVASNTMISLYAE----LGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKT----MGMLD 762 (1004)
Q Consensus 691 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 762 (1004)
+.++|.+.+++..+.+ +...+..|...|.. ..+.++|.++|++..+.+ ++.+...|...|.. ..+.+
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~ 112 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEK 112 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHH
Confidence 4445555555444433 23333334333332 233455555555554433 33333444444433 23455
Q ss_pred HHHHHHHHHHHCC
Q 048751 763 EAIDAAEEMKLSG 775 (1004)
Q Consensus 763 ~A~~~~~~~~~~~ 775 (1004)
+|+++|++..+.|
T Consensus 113 ~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 113 QAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 5555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.28 E-value=1.2 Score=37.02 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 048751 341 RLQDAANVFAEMLKSGVAVDTITFNTMIYTCGSHGNLSEAEALFCMMEESRISPDTKTYNILLSLYAD----VGNINAAL 416 (1004)
Q Consensus 341 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 416 (1004)
++++|+..|++..+.|.. ..+..|. .....+.++|.+.+++..+.| +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 577888888888877632 2222332 234567888888888888765 45566666666654 34678888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 048751 417 RYYWKIREVGLFPDSVTQRAILHILCQ----RNMVQEAEAVIIEMEKCGL 462 (1004)
Q Consensus 417 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 462 (1004)
++|++..+.| +......|-..|.. ..+.++|.+.++...+.|.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888887764 34445555555544 3467777777777666653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.66 E-value=1.1 Score=36.38 Aligned_cols=66 Identities=6% Similarity=-0.080 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048751 709 PDTVASNTMISLYAELG---MVTEAESMFNDIREKGQVDA-VSFAAMMYLYKTMGMLDEAIDAAEEMKLS 774 (1004)
Q Consensus 709 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 774 (1004)
+...+--..+.++.+.. ++++|+.+++.+.+.+|.+. ..+..|+-+|.+.|++++|.+.++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44444444555555443 34566677776666555443 46666666677777777777777777663
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.66 E-value=6.6 Score=40.49 Aligned_cols=417 Identities=9% Similarity=0.001 Sum_probs=204.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHh--cCCHHHHHHHHHHhhhcCCCCHH---HHHHHHHHHHh
Q 048751 438 LHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYIN--EGLLHQAKIIFKKCQLDGGLSSK---TLAAIIDVYAE 512 (1004)
Q Consensus 438 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 512 (1004)
+....+.|+..++.++...+... | -..|...-..-.. .....+.. ..+...+..+. ........+.+
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~----~Fl~~~p~~P~~~~lr~~~l~~L~~ 84 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVT----NFVRANPTLPPARTLQSRFVNELAR 84 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHH----HHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHH----HHHHHCCCChhHHHHHHHHHHHHHh
Confidence 34456778888777777666321 1 1112211111111 22333333 33344444443 33444566677
Q ss_pred cCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 048751 513 KGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKNLGTWPDECTYNSLVQMFAGGDLMGQAVD 592 (1004)
Q Consensus 513 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 592 (1004)
.+++......+.. .+.+...-.....+....|+.++|...+..+-..|.. ..+.+..
T Consensus 85 ~~~w~~~~~~~~~------~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~c~~ 141 (450)
T d1qsaa1 85 REDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNACDK 141 (450)
T ss_dssp TTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTHHHH
T ss_pred ccCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchHHHH
Confidence 7777765554421 3344554445666677777777777766665444321 1223344
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 593 LLAEMQGAGFKPQCLTFSSVIAAYARLGQLSNAVDLFHEMRRAGVEPNEVVYGSLINGFAATGKVEEALQYFRMMRECGL 672 (1004)
Q Consensus 593 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 672 (1004)
++..+.+.| ..+...+-.-+......|+...|..+...+.. .........+........+.. .....
T Consensus 142 l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~~~~~------~~~~~-- 208 (450)
T d1qsaa1 142 LFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNPNTVLT------FARTT-- 208 (450)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGGGHHH------HHHHS--
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhChHhHHH------HHhcC--
Confidence 455555544 34444444555666667777777776654321 122333333333322222211 11111
Q ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 048751 673 WANQIVLTSLIKAYSK--IGCLEGAKQVYEKMKEMEGGPDTVASNTMIS----LYAELGMVTEAESMFNDIREKGQVDAV 746 (1004)
Q Consensus 673 ~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~~~~ 746 (1004)
..+......+..++.+ ..+.+.|..++......... +...+..+-. .+...+..+.|...+........ +..
T Consensus 209 ~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 286 (450)
T d1qsaa1 209 GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STS 286 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHH
T ss_pred CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc-chH
Confidence 1233333333333322 24666677777665543322 2222222222 22234556666666665554432 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 048751 747 SFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNGQLRQCGELLHEMLTQKLLPDNGTFKVLFTILK 826 (1004)
Q Consensus 747 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 826 (1004)
.....+......+++..+...+..|... ......-..-+..++...|+.++|..+|..... .++ |.-.+.+ .
T Consensus 287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa-~ 358 (450)
T d1qsaa1 287 LIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAA-Q 358 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHH-H
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHH-H
Confidence 3333344445566777777777665432 111233334456667777777777777776642 122 2222211 1
Q ss_pred cCCCcHHHHHHHHhHhhccCCchhhhHHHHHHHHHhhhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHH
Q 048751 827 KGGFPIEAVKQLQSSYQEVKPYASEAIITSVYSVVGLNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTF 906 (1004)
Q Consensus 827 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 906 (1004)
+.|.. +....+..... .. ..+.. ++ -...+..+...|...+|...+
T Consensus 359 ~Lg~~----------~~~~~~~~~~~--------------~~----~~~~~----~~--~~~ra~~L~~~g~~~~A~~e~ 404 (450)
T d1qsaa1 359 RIGEE----------YELKIDKAPQN--------------VD----SALTQ----GP--EMARVRELMYWNLDNTARSEW 404 (450)
T ss_dssp HTTCC----------CCCCCCCCCSC--------------CC----CHHHH----SH--HHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCC----------CCCCcCCCCcc--------------HH----Hhhhc----Ch--HHHHHHHHHHcCCchHHHHHH
Confidence 12211 00000000000 00 00000 00 112356677889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048751 907 MKMLDQGLEPDIVTCINLVGCYGKAGLVEGVKRIHSQLK 945 (1004)
Q Consensus 907 ~~m~~~g~~pd~~t~~~l~~~~~~~g~~~~A~~~~~~~~ 945 (1004)
..+.+. .+......+.....+.|.++.|+....+..
T Consensus 405 ~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 405 ANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 888753 355566777788889999999998877763
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.61 E-value=0.17 Score=41.24 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=29.7
Q ss_pred hhHhhhhHHHHHHhhhccCCchhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048751 863 LNALALGTCETLIKAEAYLDSFIYNVAIYAFKSSGKNDKALNTFMKMLDQGLEPD 917 (1004)
Q Consensus 863 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 917 (1004)
+..+++.+++++++..+....-.+..|+.+|.+.|++++|.+.++++++ +.|+
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~ 105 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 105 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCC
Confidence 3345666666665543222234555666666666666666666666665 4553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.14 E-value=3 Score=33.32 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048751 715 NTMISLYAELGMVTEAESMFNDIREKGQVDAVSFAAMMYLYKTMGMLDEAIDAAEEMKLSGL 776 (1004)
Q Consensus 715 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 776 (1004)
+.-++.+.+.|+-++-.++++.+.+.+.+++.....++.+|.+.|...++-+++.++-+.|.
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 33444555555555555555555444455555555555555555555555555555554443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.01 E-value=9.8 Score=39.07 Aligned_cols=413 Identities=8% Similarity=-0.056 Sum_probs=219.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH--HccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHH
Q 048751 331 TLIDLYGKAGRLQDAANVFAEMLKSGVAVDTITFNTMIYTC--GSHGNLSEAEALFCMMEESRISPDTK----TYNILLS 404 (1004)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~----~~~~li~ 404 (1004)
..+.-..+.|+.+.+..+...+... | ...|-..-..- .......+...++++ .|+.. .-...+.
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~------~p~~P~~~~lr~~~l~ 80 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRA------NPTLPPARTLQSRFVN 80 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHH------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHH------CCCChhHHHHHHHHHH
Confidence 3445567889999988888777432 3 34443332222 233455555554443 23432 2233456
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhcCCHHH
Q 048751 405 LYADVGNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVIIEMEKCGLHIDEHSVPGVMKMYINEGLLHQ 484 (1004)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 484 (1004)
.+.+.++++..+..+. ....+...--....+..+.|+.++|...+..+-..|.. .+. .
T Consensus 81 ~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~----------------~ 138 (450)
T d1qsaa1 81 ELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPN----------------A 138 (450)
T ss_dssp HHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCT----------------H
T ss_pred HHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-Cch----------------H
Confidence 6777888877555442 12234554556777888899999998888877665533 111 2
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048751 485 AKIIFKKCQLDGGLSSKTLAAIIDVYAEKGLWAEAETVFYGKRDLVGQKKSVVEYNVMIKAYGKSKLYDKAFSLFKVMKN 564 (1004)
Q Consensus 485 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 564 (1004)
...++......+..++..+-.-+......|+...|..+...+ ...........+........+ .... ..
T Consensus 139 c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l-----~~~~~~~~~a~~~l~~~p~~~---~~~~---~~ 207 (450)
T d1qsaa1 139 CDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANNPNTV---LTFA---RT 207 (450)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHCGGGH---HHHH---HH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhC-----ChhHHHHHHHHHHHHhChHhH---HHHH---hc
Confidence 223344444444555566566666777778888888777653 222233344444443322222 1111 11
Q ss_pred CCCCCCHHHHHHHHHHHHc--CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHHcCCHhHHHHHHHHHHHcCCC
Q 048751 565 LGTWPDECTYNSLVQMFAG--GDLMGQAVDLLAEMQGAGFKPQCLTFSSVIAA----YARLGQLSNAVDLFHEMRRAGVE 638 (1004)
Q Consensus 565 ~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g~~ 638 (1004)
. .++......+..++.+ ..+.+.+..++....... ..+...+..+-.. ....+..+.+...+......+
T Consensus 208 ~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~-- 282 (450)
T d1qsaa1 208 T--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-- 282 (450)
T ss_dssp S--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--
T ss_pred C--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--
Confidence 1 1233333333333332 246677777776665432 2222222222222 223455667777776665543
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048751 639 PNEVVYGSLINGFAATGKVEEALQYFRMMRECGLWANQIVLTSLIKAYSKIGCLEGAKQVYEKMKEMEGGPDTVASNTMI 718 (1004)
Q Consensus 639 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 718 (1004)
.+.....-.+......+++..+...+..|... ......-.--+..++...|+.+.|...|..+... ++ -|..|.
T Consensus 283 ~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LA 356 (450)
T d1qsaa1 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA 356 (450)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHH
Confidence 34443334444555667888888887776432 2123334455667778888888888888877642 23 222222
Q ss_pred HHHHHcCCH-HHHHHHHHHHHHcCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048751 719 SLYAELGMV-TEAESMFNDIREKGQVDAV---SFAAMMYLYKTMGMLDEAIDAAEEMKLSGLLRDVISYNQVMACFATNG 794 (1004)
Q Consensus 719 ~~~~~~g~~-~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 794 (1004)
. .+.|.. .-.. .-....+.... .-...+..+...|....|...+..+... .+......+.....+.|
T Consensus 357 a--~~Lg~~~~~~~----~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g 427 (450)
T d1qsaa1 357 A--QRIGEEYELKI----DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQ 427 (450)
T ss_dssp H--HHTTCCCCCCC----CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTT
T ss_pred H--HHcCCCCCCCc----CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCC
Confidence 1 112210 0000 00000000000 1123456677888888888888877653 34555666777778888
Q ss_pred CHHHHHHHHHHH
Q 048751 795 QLRQCGELLHEM 806 (1004)
Q Consensus 795 ~~~~A~~~~~~~ 806 (1004)
.++.|+....+.
T Consensus 428 ~~~~aI~a~~~~ 439 (450)
T d1qsaa1 428 WWDLSVQATIAG 439 (450)
T ss_dssp CHHHHHHHHHHT
T ss_pred ChhHHHHHHHHH
Confidence 888888776655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=85.84 E-value=7.1 Score=31.08 Aligned_cols=43 Identities=12% Similarity=0.063 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048751 410 GNINAALRYYWKIREVGLFPDSVTQRAILHILCQRNMVQEAEAVII 455 (1004)
Q Consensus 410 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 455 (1004)
|.+++..++..+.... .+..-||-+|--....-+-+...++++
T Consensus 16 G~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld 58 (161)
T d1wy6a1 16 GYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLD 58 (161)
T ss_dssp TCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHH
T ss_pred hhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHH
Confidence 4444444544444432 233334444444444444333333333
|