Citrus Sinensis ID: 048755

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670----
MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGYAFISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLDGDTTISIASRVQHVFAVENETSWPDKDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVFPL
cccccHHHHHHHHHcHHHccccccEEEEEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccEEEEEEccHHHHcccccccccEEcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccEEEEEEEcccccccccccccccccEEEEccccccccccHHHcccccEEEEEccccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccHHHHcccccccEEcccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEEEEcccccccccccccccHHcccccccccccccccccccccccEEEccccccccccccccccccccccEEEEEEcccEEEEccccccccccccccccccEEEccccccccEEccccccccccccccEEEEEcccccccccccccccccccEEEEEccccc
cccccHHHHHHHHHccHHHHHcccEEEEEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccEEEEEEEccccHccHHHHcccccccccccEEEEEEccccEHEEEcccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHEcHHccccHHHHHHHEEccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEccccccccccccccccEEEEEEcccccccccHHcccccccEEEEEcccccccccccccccccccEEEEccccccccccccccccccEEEEccccccccccHHcccccccEEEEcccccccccccHHccccccccEEEEccccccccccccccccccHccHHHccccccHHHccccccccHHccHHccccccccEEEEEccccccccccccccccHHHHHHHcccccccccccccccccccccEEccccccccccccccccccccccEEEEccccccEEcccHcccccccccccccccEEEEcccccHcccccccccccccccccEEEEcccccHccccccccccccccEEEEcccccc
MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDiwgsldleaigipvaddnggcKVLLTARSQDvlsckmdcqqNFVVDVLNEKEAWSLFKKMtgdciengelkSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLkrpflrsfsgtqAVAAYSTIELSYYQLEGEELRRTFLLIGYAFISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKnscllldgdttiSIASRVQHVFAVenetswpdkdtlKVCTAISLFNtniselpqgfecpqlkyfhirndpslrisdniftgMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSycfnlqvippnvissLSRLEELyigqspimwgkvggvdgerrnasldelnnlskltSLEILIQdektlprdLSFFKMLQRYRISIgydwwsvgpwdgisRKFKLKLTnganiclneghimqlkgiedltldglpdmknvlcepgrevfpklnrlqiehngnlvrlvdtmdctpaptiafpLLESLFLRDLRNleeiccgpltaesfSKLKTIRVEGCDKLKNVFPLVIELTQLrtlelknvfpl
mggigkttlvkevgrqakennlfekvissrvsqtpqikEIQREIAEklglkideesetVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGYAFISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLDGDTTISIASRVQHVFAVenetswpdkdtLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDelnnlskltsleiliqdektlprdlSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGpltaesfskLKTIRVEGCDKLKNVFPLVIEltqlrtlelknvfpl
MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGYAFISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLDGDTTISIASRVQHVFAVENETSWPDKDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHllalpsslgllqnlqtlslDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVFPL
*******************************************IAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGYAFISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLDGDTTISIASRVQHVFAVENETSWPDKDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNV***
MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLG****************EQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLR*FSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGYAFISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLDGDTTISIASRVQHVFAVENETSWPDKDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPP*VISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGI**KFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVFPL
MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGYAFISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLDGDTTISIASRVQHVFAVENETSWPDKDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVFPL
**GIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGYAFISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLDGDTTISIASRVQHVFAVENETSWPDKDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVFPL
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MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGYAFISCVKDVICYGMGLGLFQNxxxxxxxxxxxxxxxxxxxxxCLLLDGDTTISIASRVQHVFAVENETSWPDKDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVFPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query674 2.2.26 [Sep-21-2011]
Q9T048 985 Disease resistance protei yes no 0.752 0.514 0.304 6e-50
O81825919 Probable disease resistan no no 0.934 0.685 0.290 2e-48
Q42484 909 Disease resistance protei no no 0.866 0.642 0.270 1e-42
O64973889 Disease resistance protei no no 0.639 0.484 0.271 1e-33
Q9FG91848 Probable disease resistan no no 0.672 0.534 0.291 3e-31
Q9LVT4843 Probable disease resistan no no 0.623 0.498 0.278 7e-31
Q8L3R3885 Disease resistance protei no no 0.629 0.479 0.279 1e-30
Q8RXS5888 Probable disease resistan no no 0.627 0.476 0.287 1e-30
P60838894 Probable disease resistan no no 0.594 0.448 0.284 1e-29
P60839884 Probable disease resistan no no 0.568 0.433 0.281 1e-28
>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1 Back     alignment and function desciption
 Score =  199 bits (506), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 168/551 (30%), Positives = 280/551 (50%), Gaps = 44/551 (7%)

Query: 1   MGGIGKTTLVKEVGRQAKENNL---FEKVISSRVSQTPQIKEIQREIAEKLGLKID-EES 56
           MGG+GKTTLV+ +  + +E      F  VI   VS+    +E+Q++IAE+L +    EES
Sbjct: 172 MGGVGKTTLVRTLNNKLREEGATQPFGLVIFVIVSKEFDPREVQKQIAERLDIDTQMEES 231

Query: 57  ETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCK 116
           E   A R+   L KE K L+ILDD+W  +DL+ +GIP  ++N G KV+LT+R  +V  C+
Sbjct: 232 EEKLARRIYVGLMKERKFLLILDDVWKPIDLDLLGIPRTEENKGSKVILTSRFLEV--CR 289

Query: 117 -MDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKAL 175
            M    +  VD L E++AW LF K  GD + +  ++ +A  V +EC GLP+AI+ V  A+
Sbjct: 290 SMKTDLDVRVDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAM 349

Query: 176 K-NKSLYEWRNALRQLKR--PFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGY- 231
           +  K++  W + L +L +  P+++S         +  ++LSY  LE ++ +  FLL    
Sbjct: 350 RGKKNVKLWNHVLSKLSKSVPWIKSIEE----KIFQPLKLSYDFLE-DKAKFCFLLCALF 404

Query: 232 --AFISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLDGDTTISIASR- 288
              +   V +V+ Y M  G  + + + E++ +   T V+ LK+ CLL DGD   ++    
Sbjct: 405 PEDYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHD 464

Query: 289 VQHVFAVENETSWPDKDTLKVCTA-----------------ISLFNTNISELPQGFE--C 329
           V   FA+   +S  D     V +                  +SL N  +  LP   E  C
Sbjct: 465 VVRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFC 524

Query: 330 PQLKYFHIRNDPSLR-ISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQTLSLDFC 387
            +     ++ +  L+ +          LR+L+ +   + + PS SL  L +L +L L  C
Sbjct: 525 VKTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDC 584

Query: 388 I-LGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSL 446
             L  +  +  L KLE+L L G+ + +    + EL + R LDLS   +L+ IP  V+S L
Sbjct: 585 FKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRL 644

Query: 447 SRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEK-TLPRDLSFF 505
           S LE L +  S   W   G  + ++  A+++E+  L +L  L I +      L +  ++ 
Sbjct: 645 SSLETLDMTSSHYRWSVQG--ETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWI 702

Query: 506 KMLQRYRISIG 516
           K L+++++ +G
Sbjct: 703 KRLKKFQLVVG 713
Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)
>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1 Back     alignment and function description
>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1 Back     alignment and function description
>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2 Back     alignment and function description
>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1 Back     alignment and function description
>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2 Back     alignment and function description
>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2 Back     alignment and function description
>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1 Back     alignment and function description
>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query674
224083434 1144 cc-nbs-lrr resistance protein [Populus t 0.956 0.563 0.486 1e-157
255563252 1603 Disease resistance protein RPS5, putativ 0.967 0.406 0.459 1e-152
359488027 1520 PREDICTED: disease resistance protein At 0.982 0.435 0.473 1e-152
296087872 1152 unnamed protein product [Vitis vinifera] 0.982 0.574 0.473 1e-152
224111296 1315 cc-nbs-lrr resistance protein [Populus t 0.954 0.488 0.463 1e-147
359488288 1340 PREDICTED: LOW QUALITY PROTEIN: probable 0.965 0.485 0.457 1e-146
147777048 1460 hypothetical protein VITISV_009359 [Viti 0.974 0.45 0.458 1e-145
224111284 1340 cc-nbs-lrr resistance protein [Populus t 0.967 0.486 0.467 1e-144
224125154 949 cc-nbs-lrr resistance protein [Populus t 0.956 0.679 0.453 1e-144
359488108 1436 PREDICTED: disease resistance protein At 0.954 0.447 0.460 1e-144
>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 334/687 (48%), Positives = 453/687 (65%), Gaps = 42/687 (6%)

Query: 6   KTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLL 65
           KTTLVKE  RQA +  LF +V+ + ++QT  IK+IQ +IA++L LK DEESE  RA RL 
Sbjct: 189 KTTLVKEAARQAIQEKLFNQVVFATITQTQDIKKIQGQIADQLSLKFDEESECGRAGRLR 248

Query: 66  EQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVV 125
           ++LK+E KILIILDD+W SLDLEA+GIP+ D++ GCK+L+T+R  DVLSC MD Q+NF +
Sbjct: 249 QRLKQEQKILIILDDLWKSLDLEAVGIPLKDEHEGCKMLVTSREFDVLSCGMDIQKNFPI 308

Query: 126 DVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRN 185
           + L+E+E W LFKKM GD +E+ +L+S+A EV K CAGLP+AIV VA+ALKNK+L +W+N
Sbjct: 309 NALSEEETWELFKKMAGDHVEHPDLQSLAIEVAKMCAGLPVAIVTVARALKNKNLSQWKN 368

Query: 186 ALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLL---IGYAFISCVKDVIC 242
           ALR+LKRP  R+F+G Q    Y+ IELSY  LE +EL+ TFLL   +GY   +  +D++ 
Sbjct: 369 ALRELKRPSPRNFAGVQE-DVYAAIELSYNHLESKELKSTFLLCSRMGYN--ASTRDLLK 425

Query: 243 YGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLDG-------------DTTISIASRV 289
           YGMGLGLF    T+EEA+DR H+LV KLK S LLL+              D  ISIA R 
Sbjct: 426 YGMGLGLFSGFVTVEEAQDRVHSLVHKLKASGLLLENHSDWQFSMHDAVRDVAISIAFRD 485

Query: 290 QHVF--AVENETSWPDKDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRN-DPSLRIS 346
            HVF    E E  W  K+ LK    I L ++NI EL +  E PQLK+ H+R+ DPSL IS
Sbjct: 486 CHVFVGGDEVEPKWSAKNMLKKYKEIWL-SSNI-ELLREMEYPQLKFLHVRSEDPSLEIS 543

Query: 347 DNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTL 406
            NI  GM +L+VL  T + L++LPS L  L+NL+TL L    LG+IA IG+LKKLEIL+ 
Sbjct: 544 SNICRGMHKLKVLVLTNISLVSLPSPLHFLKNLRTLCLHQSSLGEIADIGELKKLEILSF 603

Query: 407 RGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGG 466
             S+++ L  ++G+LT+LR+LDLS CF L VIPPN+ S+LS LEEL +G S   W   G 
Sbjct: 604 AKSNIKHLPRQIGQLTKLRMLDLSDCFELDVIPPNIFSNLSMLEELCMGNSFHHWATEG- 662

Query: 467 VDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWD 526
                 NASL EL++L  LT+++I + D   + + +   K L+R+RI IG  W     WD
Sbjct: 663 ----EDNASLVELDHLPHLTNVDIHVLDSHVMSKGM-LSKRLERFRIFIGDVW----DWD 713

Query: 527 GIS---RKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNR 583
           G+    R  KLKL   A+  L  G +M LK  +DL L  L  + NV+ E   E F +L  
Sbjct: 714 GVYQSLRTLKLKLNTSAS-NLEHGVLMLLKRTQDLYLLELKGVNNVVSELDTEGFLQLRH 772

Query: 584 LQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIR 643
           L + ++ ++  +++T   +  P+  FP+LESLFL +L +LE++C G LTAESF KL  I 
Sbjct: 773 LHLHNSSDIQYIINT--SSEFPSHVFPVLESLFLYNLVSLEKLCHGILTAESFRKLTIIE 830

Query: 644 VEGCDKLKNVFPLVIE--LTQLRTLEL 668
           V  C KLK++FP  +   L+QL+T+ +
Sbjct: 831 VGNCVKLKHLFPFSVARGLSQLQTINI 857

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147777048|emb|CAN65562.1| hypothetical protein VITISV_009359 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224125154|ref|XP_002319513.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857889|gb|EEE95436.1| cc-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359488108|ref|XP_003633701.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query674
TAIR|locus:2136447 985 AT4G27190 [Arabidopsis thalian 0.486 0.332 0.329 3.7e-48
TAIR|locus:2131689 919 AT4G27220 [Arabidopsis thalian 0.517 0.379 0.298 2.1e-45
TAIR|locus:2201996889 RPS5 "AT1G12220" [Arabidopsis 0.406 0.308 0.295 1.8e-34
TAIR|locus:2005517909 RPS2 "RESISTANT TO P. SYRINGAE 0.399 0.295 0.298 1e-33
TAIR|locus:2034770894 SUMM2 "AT1G12280" [Arabidopsis 0.405 0.305 0.309 5.2e-31
TAIR|locus:2201986885 RFL1 "AT1G12210" [Arabidopsis 0.406 0.309 0.304 1e-30
TAIR|locus:2034765884 AT1G12290 [Arabidopsis thalian 0.330 0.252 0.329 1.2e-29
TAIR|locus:2166320888 AT5G63020 [Arabidopsis thalian 0.403 0.306 0.305 2.4e-29
TAIR|locus:2153474874 AT5G05400 [Arabidopsis thalian 0.918 0.708 0.258 3.6e-29
TAIR|locus:2036214851 AT1G15890 [Arabidopsis thalian 0.922 0.730 0.255 4.9e-29
TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 421 (153.3 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
 Identities = 116/352 (32%), Positives = 191/352 (54%)

Query:     1 MGGIGKTTLVKEVGRQAKENNL---FEKVISSRVSQTPQIKEIQREIAEKLGLKID-EES 56
             MGG+GKTTLV+ +  + +E      F  VI   VS+    +E+Q++IAE+L +    EES
Sbjct:   172 MGGVGKTTLVRTLNNKLREEGATQPFGLVIFVIVSKEFDPREVQKQIAERLDIDTQMEES 231

Query:    57 ETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVL-SC 115
             E   A R+   L KE K L+ILDD+W  +DL+ +GIP  ++N G KV+LT+R  +V  S 
Sbjct:   232 EEKLARRIYVGLMKERKFLLILDDVWKPIDLDLLGIPRTEENKGSKVILTSRFLEVCRSM 291

Query:   116 KMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKAL 175
             K D      VD L E++AW LF K  GD + +  ++ +A  V +EC GLP+AI+ V  A+
Sbjct:   292 KTDLDVR--VDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAM 349

Query:   176 KNKSLYE-WRNALRQLKR--PFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGYA 232
             + K   + W + L +L +  P+++S    + +  +  ++LSY  LE ++ +  FLL    
Sbjct:   350 RGKKNVKLWNHVLSKLSKSVPWIKSIE--EKI--FQPLKLSYDFLE-DKAKFCFLLCALF 404

Query:   233 ---FISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLDGDTTISIASR- 288
                +   V +V+ Y M  G  + + + E++ +   T V+ LK+ CLL DGD   ++    
Sbjct:   405 PEDYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHD 464

Query:   289 VQHVFAVENETSWPDKDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRND 340
             V   FA+   +S  D D+     ++ +  T + ++ Q    P L+   + N+
Sbjct:   465 VVRDFAIWIMSSSQD-DS----HSLVMSGTGLQDIRQDKLAPSLRRVSLMNN 511
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0006952 "defense response" evidence=IEA;ISS
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0043531 "ADP binding" evidence=IEA
TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query674
pfam00931285 pfam00931, NB-ARC, NB-ARC domain 2e-35
COG4886394 COG4886, COG4886, Leucine-rich repeat (LRR) protei 5e-08
pfam13401124 pfam13401, AAA_22, AAA domain 8e-05
PLN03210 1153 PLN03210, PLN03210, Resistant to P 0.001
pfam1385560 pfam13855, LRR_8, Leucine rich repeat 0.003
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain Back     alignment and domain information 
 Score =  135 bits (342), Expect = 2e-35
 Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 13/234 (5%)

Query: 1   MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLK---IDEESE 57
           MGG+GKTTL K++         F+ V    VS+T     +Q++I ++LGL      E++E
Sbjct: 27  MGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELGLDDSDWVEKNE 86

Query: 58  TVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKM 117
           +  A ++ E L    + L++LDD+W   D + IG+P  D   G +V++T RS+ V   +M
Sbjct: 87  SELAVKIKEALL-RKRFLLVLDDVWEKNDWDKIGVPFPDGENGSRVIVTTRSESVAG-RM 144

Query: 118 DCQQNFV-VDVLNEKEAWSLFKKMTG--DCIENGELKSVATEVVKECAGLPIAIVPVAKA 174
                   V+ L  +E+W LF       +     EL+ VA E+V++C GLP+A+  +   
Sbjct: 145 GGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGL 204

Query: 175 LKNKS-LYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFL 227
           L  KS + EW + L QL    L    G   V   S + LSY  L    L+R FL
Sbjct: 205 LAFKSTVQEWEHVLEQLNN-ELAGRDGLNEV--LSILSLSYDNLP-MHLKRCFL 254

Length = 285
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 674
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 100.0
PLN03210 1153 Resistant to P. syringae 6; Provisional 100.0
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 100.0
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 99.92
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 99.92
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.87
PLN03210 1153 Resistant to P. syringae 6; Provisional 99.85
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.84
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.84
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.83
KOG0472565 consensus Leucine-rich repeat protein [Function un 99.76
KOG0472 565 consensus Leucine-rich repeat protein [Function un 99.65
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.62
KOG0617264 consensus Ras suppressor protein (contains leucine 99.61
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.58
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 99.57
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 99.5
KOG0617264 consensus Ras suppressor protein (contains leucine 99.49
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 99.48
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 99.43
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 99.33
KOG4237498 consensus Extracellular matrix protein slit, conta 99.26
KOG4237498 consensus Extracellular matrix protein slit, conta 99.12
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.08
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.06
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 99.04
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 99.01
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 98.94
PF05729166 NACHT: NACHT domain 98.93
KOG4341483 consensus F-box protein containing LRR [General fu 98.91
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 98.88
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.88
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 98.82
KOG1259490 consensus Nischarin, modulator of integrin alpha5 98.78
PRK04841 903 transcriptional regulator MalT; Provisional 98.73
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 98.7
KOG4341483 consensus F-box protein containing LRR [General fu 98.66
KOG1259490 consensus Nischarin, modulator of integrin alpha5 98.65
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 98.6
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 98.48
PRK00411394 cdc6 cell division control protein 6; Reviewed 98.46
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 98.38
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 98.35
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 98.35
COG2256436 MGS1 ATPase related to the helicase subunit of the 98.35
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 98.32
PRK06893229 DNA replication initiation factor; Validated 98.3
PLN03150623 hypothetical protein; Provisional 98.28
TIGR02928365 orc1/cdc6 family replication initiation protein. M 98.28
PF13173128 AAA_14: AAA domain 98.23
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 98.2
PLN03150623 hypothetical protein; Provisional 98.2
COG3903414 Predicted ATPase [General function prediction only 98.17
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 98.17
cd01128249 rho_factor Transcription termination factor rho is 98.16
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.15
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 98.13
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 98.13
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 98.07
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 98.06
PRK09376416 rho transcription termination factor Rho; Provisio 98.06
PRK13342413 recombination factor protein RarA; Reviewed 97.99
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 97.93
PRK05564313 DNA polymerase III subunit delta'; Validated 97.92
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 97.92
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 97.9
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 97.87
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 97.87
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 97.87
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 97.8
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 97.8
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 97.77
KOG2982 418 consensus Uncharacterized conserved protein [Funct 97.77
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 97.76
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 97.75
TIGR00767415 rho transcription termination factor Rho. Members 97.75
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 97.72
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 97.71
PRK15386 426 type III secretion protein GogB; Provisional 97.71
PRK08727233 hypothetical protein; Validated 97.7
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 97.69
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 97.66
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 97.65
PRK15386 426 type III secretion protein GogB; Provisional 97.64
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 97.64
PRK09087226 hypothetical protein; Validated 97.61
PRK12402337 replication factor C small subunit 2; Reviewed 97.6
PRK14087450 dnaA chromosomal replication initiation protein; P 97.59
PRK05642234 DNA replication initiation factor; Validated 97.56
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 97.52
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 97.51
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 97.51
PTZ001121164 origin recognition complex 1 protein; Provisional 97.51
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 97.5
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 97.5
PRK08084235 DNA replication initiation factor; Provisional 97.5
KOG2982418 consensus Uncharacterized conserved protein [Funct 97.49
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 97.48
PF14516331 AAA_35: AAA-like domain 97.48
PLN03025319 replication factor C subunit; Provisional 97.48
KOG2028554 consensus ATPase related to the helicase subunit o 97.48
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 97.47
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 97.46
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 97.46
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 97.45
PRK13341725 recombination factor protein RarA/unknown domain f 97.45
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 97.44
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 97.42
KOG1947482 consensus Leucine rich repeat proteins, some prote 97.42
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 97.41
PRK09112351 DNA polymerase III subunit delta'; Validated 97.38
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 97.36
PRK04195482 replication factor C large subunit; Provisional 97.36
PRK07471365 DNA polymerase III subunit delta'; Validated 97.34
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 97.32
PRK07940394 DNA polymerase III subunit delta'; Validated 97.31
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 97.29
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 97.29
PRK00440319 rfc replication factor C small subunit; Reviewed 97.27
PRK04132846 replication factor C small subunit; Provisional 97.27
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 97.26
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 97.25
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 97.24
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 97.2
PRK08903227 DnaA regulatory inactivator Hda; Validated 97.18
TIGR02903615 spore_lon_C ATP-dependent protease, Lon family. Me 97.15
TIGR00362405 DnaA chromosomal replication initiator protein Dna 97.15
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 97.14
KOG2123388 consensus Uncharacterized conserved protein [Funct 97.13
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 97.11
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 97.1
PRK05707328 DNA polymerase III subunit delta'; Validated 97.1
KOG1947482 consensus Leucine rich repeat proteins, some prote 97.1
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 97.09
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 97.07
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 97.06
PRK14088440 dnaA chromosomal replication initiation protein; P 97.06
KOG2543438 consensus Origin recognition complex, subunit 5 [R 97.05
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 97.04
CHL00181287 cbbX CbbX; Provisional 97.02
PRK00149450 dnaA chromosomal replication initiation protein; R 97.01
KOG2123388 consensus Uncharacterized conserved protein [Funct 97.01
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 97.0
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 96.98
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 96.96
PF00004132 AAA: ATPase family associated with various cellula 96.94
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 96.93
COG3899849 Predicted ATPase [General function prediction only 96.93
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 96.92
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 96.9
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 96.89
PRK11331459 5-methylcytosine-specific restriction enzyme subun 96.88
KOG2227529 consensus Pre-initiation complex, subunit CDC6, AA 96.85
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 96.77
PRK03992389 proteasome-activating nucleotidase; Provisional 96.76
PRK06620214 hypothetical protein; Validated 96.74
smart00382148 AAA ATPases associated with a variety of cellular 96.72
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 96.66
COG1373398 Predicted ATPase (AAA+ superfamily) [General funct 96.66
PRK12608380 transcription termination factor Rho; Provisional 96.65
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 96.58
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 96.58
PRK14086617 dnaA chromosomal replication initiation protein; P 96.58
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 96.54
PHA02544316 44 clamp loader, small subunit; Provisional 96.54
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 96.53
PRK07399314 DNA polymerase III subunit delta'; Validated 96.49
PRK12422445 chromosomal replication initiation protein; Provis 96.47
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 96.46
PRK08116268 hypothetical protein; Validated 96.41
KOG3864221 consensus Uncharacterized conserved protein [Funct 96.39
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 96.35
PRK06090319 DNA polymerase III subunit delta'; Validated 96.28
CHL00176638 ftsH cell division protein; Validated 96.27
PRK08769319 DNA polymerase III subunit delta'; Validated 96.27
PF04665241 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 96.27
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 96.23
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 96.19
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 96.12
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 96.08
PRK08118167 topology modulation protein; Reviewed 96.01
PRK06871325 DNA polymerase III subunit delta'; Validated 96.01
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 96.01
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 95.98
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 95.96
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 95.95
CHL00195489 ycf46 Ycf46; Provisional 95.9
KOG3864221 consensus Uncharacterized conserved protein [Funct 95.82
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 95.8
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 95.76
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 95.74
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 95.68
PTZ00202550 tuzin; Provisional 95.6
PRK07261171 topology modulation protein; Provisional 95.56
cd01133274 F1-ATPase_beta F1 ATP synthase beta subunit, nucle 95.46
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 95.42
PRK08181269 transposase; Validated 95.39
TIGR02237209 recomb_radB DNA repair and recombination protein R 95.33
PRK08058329 DNA polymerase III subunit delta'; Validated 95.28
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 95.07
PF08423256 Rad51: Rad51; InterPro: IPR013632 This domain is f 95.06
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 94.97
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 94.96
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 94.96
PRK06964342 DNA polymerase III subunit delta'; Validated 94.94
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 94.92
CHL00095821 clpC Clp protease ATP binding subunit 94.89
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 94.88
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 94.74
TIGR00602637 rad24 checkpoint protein rad24. This family is bas 94.71
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 94.67
COG2884223 FtsE Predicted ATPase involved in cell division [C 94.65
PRK06526254 transposase; Provisional 94.64
PRK07993334 DNA polymerase III subunit delta'; Validated 94.58
PRK10536262 hypothetical protein; Provisional 94.47
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 94.43
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 94.41
PRK08939306 primosomal protein DnaI; Reviewed 94.41
PRK04296190 thymidine kinase; Provisional 94.41
KOG0743457 consensus AAA+-type ATPase [Posttranslational modi 94.39
KOG1969877 consensus DNA replication checkpoint protein CHL12 94.32
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 94.31
PRK05541176 adenylylsulfate kinase; Provisional 94.3
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 94.3
PRK10865857 protein disaggregation chaperone; Provisional 94.28
PRK07132299 DNA polymerase III subunit delta'; Validated 94.26
COG2255332 RuvB Holliday junction resolvasome, helicase subun 94.24
TIGR02238313 recomb_DMC1 meiotic recombinase Dmc1. This model d 94.21
COG1066456 Sms Predicted ATP-dependent serine protease [Postt 94.2
PLN03187344 meiotic recombination protein DMC1 homolog; Provis 94.16
cd01393226 recA_like RecA is a bacterial enzyme which has rol 94.16
PRK09183259 transposase/IS protein; Provisional 94.06
COG0593408 DnaA ATPase involved in DNA replication initiation 94.06
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 93.98
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 93.96
PRK12377248 putative replication protein; Provisional 93.93
PRK09361225 radB DNA repair and recombination protein RadB; Pr 93.93
COG0470325 HolB ATPase involved in DNA replication [DNA repli 93.86
PRK08699325 DNA polymerase III subunit delta'; Validated 93.75
TIGR02012321 tigrfam_recA protein RecA. This model describes or 93.73
PF07693325 KAP_NTPase: KAP family P-loop domain; InterPro: IP 93.73
cd01394218 radB RadB. The archaeal protein radB shares simila 93.64
PRK07276290 DNA polymerase III subunit delta'; Validated 93.6
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 93.57
KOG0735952 consensus AAA+-type ATPase [Posttranslational modi 93.52
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 93.48
PRK07952244 DNA replication protein DnaC; Validated 93.47
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 93.39
cd00983325 recA RecA is a bacterial enzyme which has roles in 93.37
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 93.34
TIGR02236310 recomb_radA DNA repair and recombination protein R 93.33
PLN03186342 DNA repair protein RAD51 homolog; Provisional 93.27
PRK09354349 recA recombinase A; Provisional 93.27
PHA00729226 NTP-binding motif containing protein 93.22
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 93.16
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 93.02
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 93.01
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 92.93
KOG1532366 consensus GTPase XAB1, interacts with DNA repair p 92.86
PRK06835329 DNA replication protein DnaC; Validated 92.83
PRK06921266 hypothetical protein; Provisional 92.82
PF1350417 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO 92.78
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 92.76
PRK10733644 hflB ATP-dependent metalloprotease; Reviewed 92.74
KOG1514767 consensus Origin recognition complex, subunit 1, a 92.67
TIGR02239316 recomb_RAD51 DNA repair protein RAD51. This eukary 92.62
PRK10865857 protein disaggregation chaperone; Provisional 92.62
PRK04301317 radA DNA repair and recombination protein RadA; Va 92.57
cd01135276 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) 92.56
COG0468279 RecA RecA/RadA recombinase [DNA replication, recom 92.56
KOG0729435 consensus 26S proteasome regulatory complex, ATPas 92.51
KOG0731774 consensus AAA+-type ATPase containing the peptidas 92.48
COG1484254 DnaC DNA replication protein [DNA replication, rec 92.44
PRK08533230 flagellar accessory protein FlaH; Reviewed 92.4
PF00006215 ATP-synt_ab: ATP synthase alpha/beta family, nucle 92.31
PF1350417 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO 92.26
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 92.23
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 92.08
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 92.05
cd03115173 SRP The signal recognition particle (SRP) mediates 92.02
PTZ00035337 Rad51 protein; Provisional 91.82
CHL00095821 clpC Clp protease ATP binding subunit 91.81
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 91.8
TIGR00763775 lon ATP-dependent protease La. This protein is ind 91.71
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 91.7
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 91.49
TIGR03305449 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit 91.4
PRK12597461 F0F1 ATP synthase subunit beta; Provisional 91.22
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 91.21
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 91.2
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 91.0
cd01124187 KaiC KaiC is a circadian clock protein primarily f 90.92
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 90.46
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 90.28
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 90.27
cd00544169 CobU Adenosylcobinamide kinase / adenosylcobinamid 90.25
COG4608268 AppF ABC-type oligopeptide transport system, ATPas 90.2
PRK13849231 putative crown gall tumor protein VirC1; Provision 90.2
PF01583156 APS_kinase: Adenylylsulphate kinase; InterPro: IPR 90.19
PRK06217183 hypothetical protein; Validated 90.19
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 90.17
PF13238129 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB 90.11
PRK11823446 DNA repair protein RadA; Provisional 90.02
PRK09280463 F0F1 ATP synthase subunit beta; Validated 90.01
TIGR01040466 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th 89.9
PF00154322 RecA: recA bacterial DNA recombination protein; In 89.89
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 89.84
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 89.81
PRK06067234 flagellar accessory protein FlaH; Validated 89.71
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 89.7
COG0541451 Ffh Signal recognition particle GTPase [Intracellu 89.68
COG4088261 Predicted nucleotide kinase [Nucleotide transport 89.66
PRK04328249 hypothetical protein; Provisional 89.6
cd02025220 PanK Pantothenate kinase (PanK) catalyzes the phos 89.51
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 89.48
TIGR01041458 ATP_syn_B_arch ATP synthase archaeal, B subunit. A 89.48
TIGR00959428 ffh signal recognition particle protein. This mode 89.48
COG1618179 Predicted nucleotide kinase [Nucleotide transport 89.48
TIGR00064272 ftsY signal recognition particle-docking protein F 89.36
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 89.34
COG1102179 Cmk Cytidylate kinase [Nucleotide transport and me 89.31
COG0563178 Adk Adenylate kinase and related kinases [Nucleoti 89.25
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 89.22
TIGR01359183 UMP_CMP_kin_fam UMP-CMP kinase family. This subfam 89.11
COG1157441 FliI Flagellar biosynthesis/type III secretory pat 89.11
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 88.99
PRK09519790 recA DNA recombination protein RecA; Reviewed 88.96
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 88.86
PRK00771437 signal recognition particle protein Srp54; Provisi 88.84
cd01132274 F1_ATPase_alpha F1 ATP synthase alpha, central dom 88.81
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 88.77
PRK08972444 fliI flagellum-specific ATP synthase; Validated 88.76
TIGR00416454 sms DNA repair protein RadA. The gene protuct code 88.72
PRK14974336 cell division protein FtsY; Provisional 88.72
TIGR01039461 atpD ATP synthase, F1 beta subunit. The sequences 88.65
KOG0736953 consensus Peroxisome assembly factor 2 containing 88.65
COG0194191 Gmk Guanylate kinase [Nucleotide transport and met 88.6
COG0529197 CysC Adenylylsulfate kinase and related kinases [I 88.58
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 88.53
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 88.53
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 88.52
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 88.5
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 88.41
PF08303168 tRNA_lig_kinase: tRNA ligase kinase domain; InterP 88.36
TIGR03575340 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti 88.34
PF07726131 AAA_3: ATPase family associated with various cellu 88.34
PRK10867433 signal recognition particle protein; Provisional 88.25
PTZ00185574 ATPase alpha subunit; Provisional 87.99
COG1428216 Deoxynucleoside kinases [Nucleotide transport and 87.95
TIGR03574249 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem 87.9
PRK08927442 fliI flagellum-specific ATP synthase; Validated 87.71
PRK04196460 V-type ATP synthase subunit B; Provisional 87.67
cd02037169 MRP-like MRP (Multiple Resistance and pH adaptatio 87.61
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 87.49
COG3598402 RepA RecA-family ATPase [DNA replication, recombin 87.48
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 87.42
KOG3347176 consensus Predicted nucleotide kinase/nuclear prot 87.36
PF01656195 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai 87.34
CHL00060494 atpB ATP synthase CF1 beta subunit 87.31
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 87.24
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 87.17
PRK03839180 putative kinase; Provisional 87.17
CHL002062281 ycf2 Ycf2; Provisional 87.11
TIGR03324497 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit a 87.04
PF08433270 KTI12: Chromatin associated protein KTI12 ; InterP 87.01
cd02027149 APSK Adenosine 5'-phosphosulfate kinase (APSK) cat 86.99
COG1121254 ZnuC ABC-type Mn/Zn transport systems, ATPase comp 86.83
PRK09099441 type III secretion system ATPase; Provisional 86.78
PRK12678672 transcription termination factor Rho; Provisional 86.68
COG1192259 Soj ATPases involved in chromosome partitioning [C 86.68
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 86.66
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 86.65
PRK00889175 adenylylsulfate kinase; Provisional 86.61
cd03223166 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass 86.57
PTZ00088229 adenylate kinase 1; Provisional 86.48
COG3640255 CooC CO dehydrogenase maturation factor [Cell divi 86.43
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 86.33
PRK00625173 shikimate kinase; Provisional 86.33
smart0036726 LRR_CC Leucine-rich repeat - CC (cysteine-containi 86.26
COG0003322 ArsA Predicted ATPase involved in chromosome parti 86.24
PRK08149428 ATP synthase SpaL; Validated 86.23
PHA02518211 ParA-like protein; Provisional 86.21
PRK05917290 DNA polymerase III subunit delta'; Validated 86.18
PF00485194 PRK: Phosphoribulokinase / Uridine kinase family; 86.06
PRK06936439 type III secretion system ATPase; Provisional 85.99
TIGR01069771 mutS2 MutS2 family protein. Function of MutS2 is u 85.98
PRK06002450 fliI flagellum-specific ATP synthase; Validated 85.97
smart0037026 LRR Leucine-rich repeats, outliers. 85.91
smart0036926 LRR_TYP Leucine-rich repeats, typical (most popula 85.91
cd0201969 NK Nucleoside/nucleotide kinase (NK) is a protein 85.9
PRK06793432 fliI flagellum-specific ATP synthase; Validated 85.82
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 85.74
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 85.68
TIGR02902531 spore_lonB ATP-dependent protease LonB. Members of 85.64
KOG1051898 consensus Chaperone HSP104 and related ATP-depende 85.58
cd02042104 ParA ParA and ParB of Caulobacter crescentus belon 85.54
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 85.48
COG3854308 SpoIIIAA ncharacterized protein conserved in bacte 85.27
PRK06762166 hypothetical protein; Provisional 85.17
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 84.95
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 84.77
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 84.76
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 84.73
TIGR03498418 FliI_clade3 flagellar protein export ATPase FliI. 84.73
PF07015231 VirC1: VirC1 protein; InterPro: IPR009744 This fam 84.71
PF13671143 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 84.59
PF00910107 RNA_helicase: RNA helicase; InterPro: IPR000605 He 84.58
PRK08233182 hypothetical protein; Provisional 84.5
COG0467260 RAD55 RecA-superfamily ATPases implicated in signa 84.49
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 84.41
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 84.38
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 84.29
PF02367123 UPF0079: Uncharacterised P-loop hydrolase UPF0079; 84.23
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 84.1
TIGR03497413 FliI_clade2 flagellar protein export ATPase FliI. 84.08
PF1324576 AAA_19: Part of AAA domain 83.96
cd02028179 UMPK_like Uridine monophosphate kinase_like (UMPK_ 83.82
cd02029277 PRK_like Phosphoribulokinase-like (PRK-like) is a 83.78
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 83.77
PF00406151 ADK: Adenylate kinase; InterPro: IPR000850 Adenyla 83.75
PRK07594433 type III secretion system ATPase SsaN; Validated 83.72
cd02040270 NifH NifH gene encodes component II (iron protein) 83.69
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 83.66
cd01136326 ATPase_flagellum-secretory_path_III Flagellum-spec 83.6
PF03969362 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 83.55
PF02374305 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_ 83.47
COG0125208 Tmk Thymidylate kinase [Nucleotide transport and m 83.36
cd03281213 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS 83.29
PF03029238 ATP_bind_1: Conserved hypothetical ATP binding pro 83.19
PRK05922434 type III secretion system ATPase; Validated 83.1
cd02036179 MinD Bacterial cell division requires the formatio 83.05
TIGR03496411 FliI_clade1 flagellar protein export ATPase FliI. 82.99
PRK00131175 aroK shikimate kinase; Reviewed 82.99
PRK13947171 shikimate kinase; Provisional 82.87
cd01134369 V_A-ATPase_A V/A-type ATP synthase catalytic subun 82.86
PF10236309 DAP3: Mitochondrial ribosomal death-associated pro 82.52
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 82.46
PRK09302509 circadian clock protein KaiC; Reviewed 82.43
PRK05800170 cobU adenosylcobinamide kinase/adenosylcobinamide- 82.27
CHL00059485 atpA ATP synthase CF1 alpha subunit 82.26
PRK09281502 F0F1 ATP synthase subunit alpha; Validated 82.05
KOG0734752 consensus AAA+-type ATPase containing the peptidas 82.04
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 82.01
PF10443431 RNA12: RNA12 protein; InterPro: IPR018850 Mitochon 81.99
cd02021150 GntK Gluconate kinase (GntK) catalyzes the phospho 81.97
TIGR01281268 DPOR_bchL light-independent protochlorophyllide re 81.91
cd0198399 Fer4_NifH The Fer4_NifH superfamily contains a var 81.8
KOG0728404 consensus 26S proteasome regulatory complex, ATPas 81.74
TIGR01287275 nifH nitrogenase iron protein. This model describe 81.47
COG0572218 Udk Uridine kinase [Nucleotide transport and metab 81.45
COG1136226 SalX ABC-type antimicrobial peptide transport syst 81.36
PTZ00301210 uridine kinase; Provisional 81.2
PRK13768253 GTPase; Provisional 81.19
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 81.18
PRK09270229 nucleoside triphosphate hydrolase domain-containin 81.17
KOG0735952 consensus AAA+-type ATPase [Posttranslational modi 81.16
PRK13231264 nitrogenase reductase-like protein; Reviewed 80.98
PRK10037250 cell division protein; Provisional 80.95
KOG0473326 consensus Leucine-rich repeat protein [Function un 80.8
TIGR00150133 HI0065_YjeE ATPase, YjeE family. Members of this f 80.75
cd03246173 ABCC_Protease_Secretion This family represents the 80.69
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 80.67
cd00227175 CPT Chloramphenicol (Cm) phosphotransferase (CPT). 80.66
PRK07721438 fliI flagellum-specific ATP synthase; Validated 80.62
PRK05688451 fliI flagellum-specific ATP synthase; Validated 80.6
PRK13185270 chlL protochlorophyllide reductase iron-sulfur ATP 80.55
PRK06547172 hypothetical protein; Provisional 80.5
cd03216163 ABC_Carb_Monos_I This family represents the domain 80.42
PRK06696223 uridine kinase; Validated 80.4
COG4778235 PhnL ABC-type phosphonate transport system, ATPase 80.31
PRK13230279 nitrogenase reductase-like protein; Reviewed 80.28
PRK10875615 recD exonuclease V subunit alpha; Provisional 80.28
PRK10646153 ADP-binding protein; Provisional 80.25
PRK05439311 pantothenate kinase; Provisional 80.16
PRK13886241 conjugal transfer protein TraL; Provisional 80.13
PRK14529223 adenylate kinase; Provisional 80.03
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.8e-69  Score=592.94  Aligned_cols=503  Identities=30%  Similarity=0.425  Sum_probs=404.5

Q ss_pred             CCCCcHHHHHHHHHHhhh-hcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchH--HHHHHHHHHHHcCCcEEEE
Q 048755            1 MGGIGKTTLVKEVGRQAK-ENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESET--VRAWRLLEQLKKETKILII   77 (674)
Q Consensus         1 mgGiGKTtla~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~~l~~~kr~LlV   77 (674)
                      |||+||||||++++|+.. ++.+||.++||.||+.++..+++++|++.++.......+.  ...+..+..++.+|||+||
T Consensus       187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllv  266 (889)
T KOG4658|consen  187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLV  266 (889)
T ss_pred             CCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEE
Confidence            899999999999999999 8999999999999999999999999999998755443332  3444444555557999999


Q ss_pred             EeCCCCccchhhccCCcCCCCCCeEEEEEeCChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCC--CCCCchhHHHH
Q 048755           78 LDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDC--IENGELKSVAT  155 (674)
Q Consensus        78 lDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~  155 (674)
                      +||||+..+|+.+..++|....||+|++|||++.|+...++....+++..|+.+|||++|.+.+++.  ...+...++|+
T Consensus       267 LDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak  346 (889)
T KOG4658|consen  267 LDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAK  346 (889)
T ss_pred             EecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHH
Confidence            9999999999999999999999999999999999987668888899999999999999999999844  33455899999


Q ss_pred             HHHHHhCCchhhHHHHHHHHhcC-ChHHHHHHHHHhccccccCCCcccccceeeeeeecccCCChHHHHHHHHHhcccc-
Q 048755          156 EVVKECAGLPIAIVPVAKALKNK-SLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGYAF-  233 (674)
Q Consensus       156 ~i~~~c~g~Plal~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~l~~~f~~~a~fp-  233 (674)
                      +++++|+|+|||++++|+.|+.+ +..+|+++++.+.+.......++. +.+++++.+||+.|+.+ +|.||+|||+|| 
T Consensus       347 ~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~-~~i~~iLklSyd~L~~~-lK~CFLycalFPE  424 (889)
T KOG4658|consen  347 EVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME-ESILPILKLSYDNLPEE-LKSCFLYCALFPE  424 (889)
T ss_pred             HHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh-hhhHHhhhccHhhhhHH-HHHHHHhhccCCc
Confidence            99999999999999999999977 888999999998887555544333 78999999999999955 999999999999 


Q ss_pred             --ccchhhhhhhhcccccccccccHHHHHHHHHHHHHHHHhhcccccC----------------Cchhhccc-----ccc
Q 048755          234 --ISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLDG----------------DTTISIAS-----RVQ  290 (674)
Q Consensus       234 --~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----------------~~~~~~~~-----~~~  290 (674)
                        .|.++.++.+|+|+||+++....+.+++.+.+++.+|+++|+++.+                |+|.++++     +++
T Consensus       425 D~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~  504 (889)
T KOG4658|consen  425 DYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN  504 (889)
T ss_pred             ccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc
Confidence              7889999999999999998666677888999999999988888774                67777777     555


Q ss_pred             eEEEee-cCCCCCCccccccceeEeeccccccCCCCCcCCCCCcEEEcccCC--CcccCchhhcCCCcceEEEecCc-cc
Q 048755          291 HVFAVE-NETSWPDKDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDP--SLRISDNIFTGMTELRVLDFTEM-HL  366 (674)
Q Consensus       291 ~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~Lr~L~l~~~-~~  366 (674)
                      ...... +....+....+...|++++.++.+..++....+++|++|.+..|.  ...++..+|..++.||||||++| .+
T Consensus       505 ~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l  584 (889)
T KOG4658|consen  505 QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL  584 (889)
T ss_pred             eEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence            322221 123345566678899999999999999999999999999999986  67788888999999999999977 46


Q ss_pred             CCCCcccccccCCcEEEcCCcCCCC-cccccCcCCccEEecCCCC-chhchHhhcCCCCCcEEeCCCCC-CCCCCChhhh
Q 048755          367 LALPSSLGLLQNLQTLSLDFCILGD-IAIIGDLKKLEILTLRGSD-MEKLVEEMGELTQLRLLDLSYCF-NLQVIPPNVI  443 (674)
Q Consensus       367 ~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~~-~~~~~~~~~l  443 (674)
                      .++|..|+.|.+||||+++++.+.. |.++++|+.|.+||+..+. ...+|.....|++|++|.+.... ..+......+
T Consensus       585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el  664 (889)
T KOG4658|consen  585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL  664 (889)
T ss_pred             CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh
Confidence            6999999999999999999999988 8999999999999999885 44555666679999999987653 1111111224


Q ss_pred             hCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCcc----EEEeeeccCCCCCcccccccCccEEEEEEcccc
Q 048755          444 SSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLT----SLEILIQDEKTLPRDLSFFKMLQRYRISIGYDW  519 (674)
Q Consensus       444 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  519 (674)
                      .++.+|+.+......              ...+..+..+++|+    .+.+.++.....+..+..+.+|+.|.+..|...
T Consensus       665 ~~Le~L~~ls~~~~s--------------~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  665 ENLEHLENLSITISS--------------VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             hcccchhhheeecch--------------hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence            444555544442221              12233334444444    223233344455666778888888888877654

>PLN03210 Resistant to P Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>COG3903 Predicted ATPase [General function prediction only] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF14516 AAA_35: AAA-like domain Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG3899 Predicted ATPase [General function prediction only] Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK12608 transcription termination factor Rho; Provisional Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08118 topology modulation protein; Reviewed Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PTZ00202 tuzin; Provisional Back     alignment and domain information
>PRK07261 topology modulation protein; Provisional Back     alignment and domain information
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05541 adenylylsulfate kinase; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK07132 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 Back     alignment and domain information
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>PRK07276 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR02236 recomb_radA DNA repair and recombination protein RadA Back     alignment and domain information
>PLN03186 DNA repair protein RAD51 homolog; Provisional Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] Back     alignment and domain information
>TIGR02239 recomb_RAD51 DNA repair protein RAD51 Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B Back     alignment and domain information
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PTZ00035 Rad51 protein; Provisional Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta Back     alignment and domain information
>PRK12597 F0F1 ATP synthase subunit beta; Provisional Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) Back     alignment and domain information
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13849 putative crown gall tumor protein VirC1; Provisional Back     alignment and domain information
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>PRK06217 hypothetical protein; Validated Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK09280 F0F1 ATP synthase subunit beta; Validated Back     alignment and domain information
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit Back     alignment and domain information
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response [] Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family Back     alignment and domain information
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK09519 recA DNA recombination protein RecA; Reviewed Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>PRK08972 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>TIGR01039 atpD ATP synthase, F1 beta subunit Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases [] Back     alignment and domain information
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PTZ00185 ATPase alpha subunit; Provisional Back     alignment and domain information
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal Back     alignment and domain information
>PRK08927 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK04196 V-type ATP synthase subunit B; Provisional Back     alignment and domain information
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases Back     alignment and domain information
>CHL00060 atpB ATP synthase CF1 beta subunit Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03839 putative kinase; Provisional Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha Back     alignment and domain information
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] Back     alignment and domain information
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) Back     alignment and domain information
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09099 type III secretion system ATPase; Provisional Back     alignment and domain information
>PRK12678 transcription termination factor Rho; Provisional Back     alignment and domain information
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>PRK00889 adenylylsulfate kinase; Provisional Back     alignment and domain information
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome Back     alignment and domain information
>PTZ00088 adenylate kinase 1; Provisional Back     alignment and domain information
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>PRK00625 shikimate kinase; Provisional Back     alignment and domain information
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily Back     alignment and domain information
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK08149 ATP synthase SpaL; Validated Back     alignment and domain information
>PHA02518 ParA-like protein; Provisional Back     alignment and domain information
>PRK05917 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 Back     alignment and domain information
>PRK06936 type III secretion system ATPase; Provisional Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>PRK06002 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>smart00370 LRR Leucine-rich repeats, outliers Back     alignment and domain information
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily Back     alignment and domain information
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars Back     alignment and domain information
>PRK06793 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK06762 hypothetical protein; Provisional Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI Back     alignment and domain information
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins Back     alignment and domain information
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B Back     alignment and domain information
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) Back     alignment and domain information
>PRK08233 hypothetical protein; Provisional Back     alignment and domain information
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 Back     alignment and domain information
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells Back     alignment and domain information
>PRK07594 type III secretion system ATPase SsaN; Validated Back     alignment and domain information
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein Back     alignment and domain information
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP Back     alignment and domain information
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B Back     alignment and domain information
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes Back     alignment and domain information
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity Back     alignment and domain information
>PRK05922 type III secretion system ATPase; Validated Back     alignment and domain information
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell Back     alignment and domain information
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI Back     alignment and domain information
>PRK00131 aroK shikimate kinase; Reviewed Back     alignment and domain information
>PRK13947 shikimate kinase; Provisional Back     alignment and domain information
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A Back     alignment and domain information
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PRK09302 circadian clock protein KaiC; Reviewed Back     alignment and domain information
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated Back     alignment and domain information
>CHL00059 atpA ATP synthase CF1 alpha subunit Back     alignment and domain information
>PRK09281 F0F1 ATP synthase subunit alpha; Validated Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] Back     alignment and domain information
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate Back     alignment and domain information
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein Back     alignment and domain information
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain Back     alignment and domain information
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01287 nifH nitrogenase iron protein Back     alignment and domain information
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>PTZ00301 uridine kinase; Provisional Back     alignment and domain information
>PRK13768 GTPase; Provisional Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13231 nitrogenase reductase-like protein; Reviewed Back     alignment and domain information
>PRK10037 cell division protein; Provisional Back     alignment and domain information
>KOG0473 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>TIGR00150 HI0065_YjeE ATPase, YjeE family Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) Back     alignment and domain information
>PRK07721 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK05688 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional Back     alignment and domain information
>PRK06547 hypothetical protein; Provisional Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK06696 uridine kinase; Validated Back     alignment and domain information
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13230 nitrogenase reductase-like protein; Reviewed Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PRK10646 ADP-binding protein; Provisional Back     alignment and domain information
>PRK05439 pantothenate kinase; Provisional Back     alignment and domain information
>PRK13886 conjugal transfer protein TraL; Provisional Back     alignment and domain information
>PRK14529 adenylate kinase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query674
1z6t_A591 Structure Of The Apoptotic Protease-activating Fact 2e-06
3iza_B 1263 Structure Of An Apoptosome-Procaspase-9 Card Comple 3e-06
3sfz_A 1249 Crystal Structure Of Full-Length Murine Apaf-1 Leng 6e-06
3shf_A 1256 Crystal Structure Of The R265s Mutant Of Full-Lengt 3e-05
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1 Bound To Adp Length = 591 Back     alignment and structure 
Iteration: 1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 56/234 (23%)
Query: 1   MGGIGKTTLVKE--------------------VGRQAKENNLFE-KVISSRVSQTPQIKE 39
           M G GK+ L  E                    VG+Q K   L + + + +R+ Q      
Sbjct: 155 MAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQ------ 208
Query: 40  IQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNG 99
                +++L L I+E  + +R    +  L+K  + L+ILDD+W S  L+A        + 
Sbjct: 209 -DESFSQRLPLNIEEAKDRLR----ILMLRKHPRSLLILDDVWDSWVLKAF-------DS 256
Query: 100 GCKVLLTARSQDVLSCKMDCQQNFVVDVLN----EK--EAWSLFKKMTGDCIENGELKSV 153
            C++LLT R + V    M     +VV V +    EK  E  SLF  M     +  +L   
Sbjct: 257 QCQILLTTRDKSVTDSVMG--PKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQ 309
Query: 154 ATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAY 207
           A  ++KEC G P+ +V +  AL       W   L+QL+    + F   +  ++Y
Sbjct: 310 AHSIIKECKGSPL-VVSLIGALLRDFPNRWEYYLKQLQN---KQFKRIRKSSSY 359
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 Back     alignment and structure
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query674
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 8e-37
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-18
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 3e-29
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 6e-20
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 3e-16
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 8e-11
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 2e-08
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 1e-15
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 4e-15
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 2e-11
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 2e-11
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 4e-10
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 4e-10
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 2e-09
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 5e-05
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 7e-15
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 4e-14
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 6e-14
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 5e-10
4fmz_A347 Internalin; leucine rich repeat, structural genomi 5e-14
4fmz_A347 Internalin; leucine rich repeat, structural genomi 5e-14
4fmz_A347 Internalin; leucine rich repeat, structural genomi 6e-14
4fmz_A347 Internalin; leucine rich repeat, structural genomi 9e-13
4fmz_A347 Internalin; leucine rich repeat, structural genomi 9e-12
4fmz_A347 Internalin; leucine rich repeat, structural genomi 5e-11
4fmz_A347 Internalin; leucine rich repeat, structural genomi 8e-11
4fmz_A347 Internalin; leucine rich repeat, structural genomi 2e-06
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 1e-13
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 4e-11
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 3e-09
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 2e-05
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 1e-13
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 5e-12
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 1e-11
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 5e-11
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 6e-11
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 5e-10
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 1e-13
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 3e-12
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 2e-11
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 4e-06
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 2e-04
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 1e-13
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 2e-10
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 3e-10
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 3e-13
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 3e-11
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 2e-10
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 9e-08
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 7e-04
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 6e-13
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 3e-11
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 5e-11
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 4e-04
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 4e-04
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 8e-13
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 2e-10
3vq2_A 606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 7e-10
3vq2_A 606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 3e-09
4ezg_A197 Putative uncharacterized protein; internalin-A, le 1e-12
4ezg_A197 Putative uncharacterized protein; internalin-A, le 2e-11
1o6v_A 466 Internalin A; bacterial infection, extracellular r 1e-12
1o6v_A466 Internalin A; bacterial infection, extracellular r 3e-12
1o6v_A466 Internalin A; bacterial infection, extracellular r 6e-12
1o6v_A466 Internalin A; bacterial infection, extracellular r 8e-12
1o6v_A466 Internalin A; bacterial infection, extracellular r 9e-12
1o6v_A466 Internalin A; bacterial infection, extracellular r 1e-11
1o6v_A466 Internalin A; bacterial infection, extracellular r 2e-10
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 2e-12
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 2e-11
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 6e-10
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 2e-12
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 8e-11
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 6e-10
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 8e-08
2id5_A 477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 3e-12
2id5_A 477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 1e-05
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 5e-12
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 9e-11
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 9e-11
2z63_A 570 TOLL-like receptor 4, variable lymphocyte recepto; 4e-10
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 9e-12
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 7e-10
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 8e-10
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 1e-08
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 1e-11
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 9e-11
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 1e-10
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 2e-06
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 3e-11
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 3e-11
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 1e-10
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 9e-09
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 3e-06
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 5e-11
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 1e-10
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 6e-09
3j0a_A844 TOLL-like receptor 5; membrane protein, leucine-ri 9e-04
2z81_A 549 CD282 antigen, TOLL-like receptor 2, variable lymp 7e-11
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 4e-10
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 1e-06
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 7e-11
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 2e-10
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 2e-10
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 4e-10
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 8e-11
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 3e-10
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 6e-10
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 9e-09
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 2e-07
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 4e-07
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 6e-05
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 7e-04
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 1e-10
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 4e-09
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 3e-06
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 1e-10
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 1e-07
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 2e-10
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 5e-09
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 3e-05
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 7e-05
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 3e-10
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 9e-10
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 6e-09
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 2e-08
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 3e-06
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 3e-06
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 1e-09
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 5e-08
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 2e-09
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 3e-05
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 3e-09
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 1e-08
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 3e-04
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 4e-09
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 1e-06
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 5e-04
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 4e-09
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 2e-05
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 6e-09
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 3e-08
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 1e-05
1jl5_A 454 Outer protein YOPM; leucine-rich repeat, molecular 3e-04
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 1e-08
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 3e-08
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 1e-07
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 2e-06
3bz5_A 457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 2e-04
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 1e-08
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 2e-07
2z7x_B 520 TOLL-like receptor 1, variable lymphocyte recepto; 3e-07
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 2e-08
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 3e-08
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 2e-06
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 3e-08
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 4e-05
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 4e-08
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 5e-06
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 2e-05
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 2e-07
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 1e-04
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 3e-07
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 2e-06
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 8e-07
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 5e-06
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 2e-06
3cvr_A571 Invasion plasmid antigen; leucine rich repeat and 6e-06
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 9e-05
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 7e-06
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 2e-05
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 1e-04
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 1e-04
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 2e-04
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 2e-04
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 3e-04
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 4e-04
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 8e-04
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 Back     alignment and structure
 Score =  144 bits (364), Expect = 8e-37
 Identities = 38/301 (12%), Positives = 88/301 (29%), Gaps = 32/301 (10%)

Query: 1   MGGIGKTTLVKEVGRQAKE--NNLFEKVISSRVSQT--PQIKEIQREIAEKLG------- 49
             G GK+ +  +   ++ +     ++ ++  + S T      ++  +I   L        
Sbjct: 160 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLN 219

Query: 50  -LKIDEESETVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTAR 108
              ++  +  V    +   L      L + DD+     +              + L+T R
Sbjct: 220 FPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWA------QELRLRCLVTTR 273

Query: 109 SQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAI 168
             ++ +      +   V  L   E +   +          + + V  + ++  +G P  +
Sbjct: 274 DVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATL 333

Query: 169 VPVAKALKNKSLYEW---RNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRT 225
           +   K+ + K+  +     N L       +   +     +    ++     L  +E R  
Sbjct: 334 MMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLS-DEDRSA 392

Query: 226 FLLIGYAF-----ISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLDGD 280
                        I  VK   C             L+   D     + +L     LL G 
Sbjct: 393 LAFAV-VMPPGVDIP-VKLWSCVIPVDICSNEEEQLD---DEVADRLKRLSKRGALLSGK 447

Query: 281 T 281
            
Sbjct: 448 R 448
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query674
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 100.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 99.96
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 99.95
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.94
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 99.94
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 99.94
3vq2_A 606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 99.94
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 99.93
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 99.93
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.93
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 99.93
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 99.93
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 99.93
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 99.93
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 99.93
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.92
3vq2_A 606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 99.92
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 99.92
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 99.92
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 99.92
2z7x_B 520 TOLL-like receptor 1, variable lymphocyte recepto; 99.92
2id5_A 477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.92
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.92
2z81_A 549 CD282 antigen, TOLL-like receptor 2, variable lymp 99.92
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 99.91
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 99.91
3a79_B 562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.91
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.91
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.9
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 99.9
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 99.9
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 99.9
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 99.89
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.89
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 99.89
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 99.89
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.89
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 99.89
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.88
3bz5_A 457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.88
3a79_B 562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.87
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.87
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.87
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.87
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.86
4g8a_A 635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.86
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.85
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 99.84
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 99.84
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.84
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.83
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.83
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.83
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.83
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.82
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 99.82
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 99.82
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.81
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.81
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.8
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.78
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.77
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 99.75
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 99.75
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 99.75
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 99.75
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.74
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 99.74
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 99.74
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.73
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.72
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 99.72
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.72
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 99.72
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 99.72
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 99.7
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 99.7
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 99.69
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 99.69
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 99.68
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 99.68
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 99.67
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 99.67
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 99.67
3m19_A251 Variable lymphocyte receptor A diversity region; a 99.67
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.66
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.66
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 99.65
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 99.64
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.64
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 99.63
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.62
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 99.6
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 99.6
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 99.59
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 99.58
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 99.58
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 99.57
3m19_A251 Variable lymphocyte receptor A diversity region; a 99.57
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.57
3e6j_A229 Variable lymphocyte receptor diversity region; var 99.57
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.56
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.55
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 99.55
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.55
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 99.54
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 99.53
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.53
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.53
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 99.51
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 99.47
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 99.47
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 99.46
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 99.46
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 99.45
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 99.43
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 99.42
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 99.42
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.41
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 99.41
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 99.41
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.39
3e6j_A229 Variable lymphocyte receptor diversity region; var 99.38
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.36
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.33
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 99.32
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 99.3
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 99.28
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 99.27
1w8a_A192 SLIT protein; signaling protein, secreted protein, 99.26
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 99.25
1w8a_A192 SLIT protein; signaling protein, secreted protein, 99.25
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 99.22
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 99.22
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 99.16
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 99.14
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 99.11
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 99.09
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 99.07
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 99.03
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 99.02
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 98.98
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 98.98
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 98.94
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 98.93
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 98.92
2fna_A357 Conserved hypothetical protein; structural genomic 98.86
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 98.79
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 98.69
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 98.65
4fdw_A401 Leucine rich hypothetical protein; putative cell s 98.64
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 98.62
2chg_A226 Replication factor C small subunit; DNA-binding pr 98.62
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 98.55
4fdw_A401 Leucine rich hypothetical protein; putative cell s 98.53
2v1u_A387 Cell division control protein 6 homolog; DNA repli 98.53
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 98.52
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 98.49
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 98.44
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 98.42
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 98.26
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 98.25
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 98.18
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 98.15
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 98.15
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 98.03
4gt6_A394 Cell surface protein; leucine rich repeats, putati 98.02
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 98.02
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 97.97
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 97.93
2chq_A319 Replication factor C small subunit; DNA-binding pr 97.76
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 97.74
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 97.67
4gt6_A394 Cell surface protein; leucine rich repeats, putati 97.66
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 97.65
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 97.64
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 97.62
4h09_A379 Hypothetical leucine rich repeat protein; two LRR_ 97.62
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 97.6
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 97.59
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 97.58
3bos_A242 Putative DNA replication factor; P-loop containing 97.48
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 97.4
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 97.39
3pvs_A447 Replication-associated recombination protein A; ma 97.38
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 97.35
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 97.34
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 97.31
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 97.26
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 97.2
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 97.19
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 97.16
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 97.11
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 97.09
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 97.06
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 97.04
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 96.98
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 96.94
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 96.92
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 96.91
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 96.84
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 96.79
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 96.79
4h09_A379 Hypothetical leucine rich repeat protein; two LRR_ 96.71
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 96.56
2gno_A305 DNA polymerase III, gamma subunit-related protein; 96.47
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 96.43
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 96.43
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 96.42
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 96.34
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 96.32
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 96.15
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 96.05
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 95.89
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 95.85
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 95.78
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 95.59
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 95.37
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 95.33
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 95.29
2r62_A268 Cell division protease FTSH homolog; ATPase domain 95.24
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 95.22
3io5_A333 Recombination and repair protein; storage dimer, i 95.15
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 94.8
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 94.56
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 94.53
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 94.52
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 94.43
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 94.32
3rfe_A130 Platelet glycoprotein IB beta chain; platelet surf 94.25
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 94.25
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 94.24
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 94.21
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 94.18
2kjq_A149 DNAA-related protein; solution structure, NESG, st 94.06
2cvh_A220 DNA repair and recombination protein RADB; filamen 94.0
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 93.97
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 93.79
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 93.74
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 93.62
2z43_A324 DNA repair and recombination protein RADA; archaea 93.59
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 93.57
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 93.4
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 93.33
2dhr_A499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 93.18
3co5_A143 Putative two-component system transcriptional RES 92.94
3rfe_A130 Platelet glycoprotein IB beta chain; platelet surf 92.86
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 92.77
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 92.71
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 92.62
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 92.44
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 92.26
1xp8_A366 RECA protein, recombinase A; recombination, radior 92.26
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 92.25
1u94_A356 RECA protein, recombinase A; homologous recombinat 92.22
1jr3_D343 DNA polymerase III, delta subunit; processivity, p 92.09
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 91.99
1ojl_A304 Transcriptional regulatory protein ZRAR; response 91.79
1sky_E473 F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp 91.73
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 91.66
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 91.41
2qgz_A308 Helicase loader, putative primosome component; str 91.0
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 90.87
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 90.62
1fx0_B498 ATP synthase beta chain; latent ATPase, thermal st 90.48
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 89.64
2ck3_D482 ATP synthase subunit beta\, mitochondrial; hydrola 89.55
4a74_A231 DNA repair and recombination protein RADA; hydrola 89.54
3ice_A422 Transcription termination factor RHO; transcriptio 89.51
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 88.99
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 88.96
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 88.87
3vr4_D465 V-type sodium ATPase subunit D; V-ATPase, rotary m 88.25
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 88.2
3gqb_B464 V-type ATP synthase beta chain; A3B3, V-ATPase, AT 87.83
3cwq_A209 Para family chromosome partitioning protein; alpha 87.34
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 87.12
3hjn_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 87.07
2c61_A469 A-type ATP synthase non-catalytic subunit B; hydro 86.74
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 86.73
1vma_A306 Cell division protein FTSY; TM0570, structural gen 85.83
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 85.69
3l0o_A427 Transcription termination factor RHO; helicase, RH 85.46
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 84.92
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 84.64
4dzz_A206 Plasmid partitioning protein PARF; deviant walker 84.6
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 84.49
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 84.07
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 84.04
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 84.02
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 83.99
2xxa_A433 Signal recognition particle protein; protein trans 83.17
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 82.99
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 82.58
3vaa_A199 Shikimate kinase, SK; structural genomics, center 82.48
2qe7_A502 ATP synthase subunit alpha; blockage of ATP hydrol 82.42
1via_A175 Shikimate kinase; structural genomics, transferase 82.27
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 82.22
2r9v_A515 ATP synthase subunit alpha; TM1612, structural gen 81.81
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 81.79
3kjh_A254 CO dehydrogenase/acetyl-COA synthase complex, acce 81.76
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 81.6
3cmu_A2050 Protein RECA, recombinase A; homologous recombinat 81.49
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 81.33
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 81.3
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 80.92
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 80.74
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 80.68
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 80.62
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 80.53
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
Probab=100.00  E-value=5.8e-35  Score=317.06  Aligned_cols=261  Identities=15%  Similarity=0.121  Sum_probs=190.9

Q ss_pred             CCCCcHHHHHHHHHH--hhhhcccCceEEEEEecCCc--CHHHHHHHHHHHhCCCCc-------ccchHH-HHHHHHHHH
Q 048755            1 MGGIGKTTLVKEVGR--QAKENNLFEKVISSRVSQTP--QIKEIQREIAEKLGLKID-------EESETV-RAWRLLEQL   68 (674)
Q Consensus         1 mgGiGKTtla~~~~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~-------~~~~~~-~~~~~~~~l   68 (674)
                      |||+||||||+++|+  +...+.+|++++||++++..  +..+++++|+++++....       ...+.. ....+.+.+
T Consensus       160 ~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L  239 (549)
T 2a5y_B          160 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL  239 (549)
T ss_dssp             STTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHH
Confidence            899999999999998  56667789999999999875  899999999999986522       111222 334455555


Q ss_pred             HcCCcEEEEEeCCCCccchhhccCCcCCCCCCeEEEEEeCChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755           69 KKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG  148 (674)
Q Consensus        69 ~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~  148 (674)
                      .++|||||||||||+..++ .+.     ...||+||||||++.++.........|++++|+.++|++||.++++....++
T Consensus       240 ~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~  313 (549)
T 2a5y_B          240 IDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGE  313 (549)
T ss_dssp             TTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--C
T ss_pred             cCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCch
Confidence            5434999999999998764 111     1269999999999999763222446799999999999999999998654457


Q ss_pred             chhHHHHHHHHHhCCchhhHHHHHHHHhcCChHHHHHHHHHhccccccCCCcccccceeeeeeecccCCChHHHHHHHH-
Q 048755          149 ELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFL-  227 (674)
Q Consensus       149 ~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~l~~~f~-  227 (674)
                      ...+++++|+++|+|+|||++.+|+.++.++. +|.+.+..   .....    ....+..++.+||+.|+.+ ++.||. 
T Consensus       314 ~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~---~l~~~----~~~~i~~~l~~Sy~~L~~~-lk~~f~~  384 (549)
T 2a5y_B          314 KEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNN---KLESR----GLVGVECITPYSYKSLAMA-LQRCVEV  384 (549)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHH---HHHHH----CSSTTCCCSSSSSSSHHHH-HHHHHHT
T ss_pred             hHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHH---Hhhcc----cHHHHHHHHhcccccccHH-HHHHHhc
Confidence            78889999999999999999999999987743 33222222   11110    1256789999999999988 899999 


Q ss_pred             ----------Hhcccc-ccchhhhhhhhccc--ccccccccHHHHHHHHHHHHHHHHhhcccccC
Q 048755          228 ----------LIGYAF-ISCVKDVICYGMGL--GLFQNINTLEEARDRAHTLVDKLKNSCLLLDG  279 (674)
Q Consensus       228 ----------~~a~fp-~~~~~~li~~w~~~--g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  279 (674)
                                |||+|| +....  +..|+|+  ||+.........++... ++++|+++++++..
T Consensus       385 Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~  446 (549)
T 2a5y_B          385 LSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSG  446 (549)
T ss_dssp             SCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEE
T ss_pred             cchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEe
Confidence                      999999 44444  8999999  99975331111233334 78888889998753
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B* Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ... Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D* Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D* Back     alignment and structure
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} Back     alignment and structure
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 674
d2a5yb3277 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor 2e-26
d2omza2384 c.10.2.1 (A:33-416) Internalin A {Listeria monocyt 1e-09
d2omza2384 c.10.2.1 (A:33-416) Internalin A {Listeria monocyt 7e-07
d2omza2384 c.10.2.1 (A:33-416) Internalin A {Listeria monocyt 9e-05
d2omza2384 c.10.2.1 (A:33-416) Internalin A {Listeria monocyt 1e-04
d1jl5a_353 c.10.2.6 (A:) Leucine rich effector protein YopM { 1e-05
d1jl5a_353 c.10.2.6 (A:) Leucine rich effector protein YopM { 0.001
d1koha1162 c.10.2.3 (A:201-362) mRNA export factor tap {Human 5e-04
d1z7xw1 460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 5e-04
d1dcea3124 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase 8e-04
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 9e-04
d1m9la_198 c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree 0.001
d1a9na_162 c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom 0.001
d1ogqa_313 c.10.2.8 (A:) Polygalacturonase inhibiting protein 0.002
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  107 bits (267), Expect = 2e-26
 Identities = 31/238 (13%), Positives = 75/238 (31%), Gaps = 27/238 (11%)

Query: 1   MGGIGKTTLVKEVGRQAKEN--NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESET 58
             G GK+ +  +   ++ +     ++ ++  + S T             L LK +++   
Sbjct: 52  RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLN 111

Query: 59  VRAWR----------LLEQLKKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTAR 108
             +            +   L      L + DD+     +              + L+T R
Sbjct: 112 FPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWA------QELRLRCLVTTR 165

Query: 109 SQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAI 168
             ++ +      +   V  L   E +   +          + + V  + ++  +G P  +
Sbjct: 166 DVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATL 225

Query: 169 VPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTF 226
           +   K+ + K+  +      +L+   L    G + +        SY  L    L+R  
Sbjct: 226 MMFFKSCEPKTFEKMAQLNNKLESRGL---VGVECI-----TPYSYKSL-AMALQRCV 274
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query674
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 100.0
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.83
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.75
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.74
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.72
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.67
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.66
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.66
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 99.65
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.59
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.59
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.59
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.59
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.58
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.57
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.57
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.56
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 99.53
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.52
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.48
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.48
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 99.38
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 99.33
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 99.32
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 99.32
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 99.29
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 99.26
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 99.26
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 99.12
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 99.06
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 99.06
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 98.71
d2ifga3156 High affinity nerve growth factor receptor, N-term 98.69
d2ifga3156 High affinity nerve growth factor receptor, N-term 98.64
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 98.53
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 98.52
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 98.44
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 98.17
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 97.8
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 97.8
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 97.73
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 97.71
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 97.64
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 97.59
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 97.53
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 97.53
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 97.35
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 97.34
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 97.32
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 97.31
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 97.29
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 97.16
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 97.16
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 97.14
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 97.1
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 97.08
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 96.89
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 96.82
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 96.49
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 96.49
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 96.13
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 95.51
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 95.35
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 95.22
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 95.19
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 95.12
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 94.66
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 94.54
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 94.15
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 93.78
d2jdid3276 Central domain of beta subunit of F1 ATP synthase 92.98
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 92.7
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 92.22
d1ls1a2207 GTPase domain of the signal sequence recognition p 92.12
d2qy9a2211 GTPase domain of the signal recognition particle r 91.64
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 91.38
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 91.35
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 91.04
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 90.98
d1okkd2207 GTPase domain of the signal recognition particle r 90.82
d1vmaa2213 GTPase domain of the signal recognition particle r 90.76
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 90.33
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 90.24
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 89.75
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 89.38
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 89.34
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 89.33
d1j8yf2211 GTPase domain of the signal sequence recognition p 89.01
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 88.93
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 88.9
d1hyqa_232 Cell division regulator MinD {Archaeon Archaeoglob 88.87
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 88.43
d1xpua3289 Transcription termination factor Rho, ATPase domai 88.35
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 88.2
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 88.09
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 88.06
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 87.78
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 87.59
d1fx0a3276 Central domain of alpha subunit of F1 ATP synthase 87.34
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 87.22
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 86.09
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 85.63
d1g3qa_237 Cell division regulator MinD {Archaeon Pyrococcus 85.48
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 85.45
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 84.95
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 84.81
d1ihua2279 Arsenite-translocating ATPase ArsA {Escherichia co 84.58
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 84.48
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 84.09
d1cp2a_269 Nitrogenase iron protein {Clostridium pasteurianum 83.89
d2jdia3285 Central domain of alpha subunit of F1 ATP synthase 83.84
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 83.72
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 83.42
d2afhe1289 Nitrogenase iron protein {Azotobacter vinelandii [ 83.4
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 83.12
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 83.06
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 82.58
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 82.44
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 82.37
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 82.27
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 82.0
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 81.6
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 81.47
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 81.45
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 81.29
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 81.23
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 81.18
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=7.1e-35  Score=284.00  Aligned_cols=213  Identities=14%  Similarity=0.127  Sum_probs=170.6

Q ss_pred             CCCCcHHHHHHHHHHhhh--hcccCceEEEEEecCCcCHHHHHHHHHHHh---CCCCc-------ccchHHHHHHHHHHH
Q 048755            1 MGGIGKTTLVKEVGRQAK--ENNLFEKVISSRVSQTPQIKEIQREIAEKL---GLKID-------EESETVRAWRLLEQL   68 (674)
Q Consensus         1 mgGiGKTtla~~~~~~~~--~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l---~~~~~-------~~~~~~~~~~~~~~l   68 (674)
                      |||+||||||+++|++..  ...+|++++||++++.++...+...+...+   +....       ............+..
T Consensus        52 mgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (277)
T d2a5yb3          52 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL  131 (277)
T ss_dssp             STTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHH
Confidence            899999999999999855  566799999999999888777766654433   22211       112223334455666


Q ss_pred             HcCCcEEEEEeCCCCccchhhccCCcCCCCCCeEEEEEeCChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755           69 KKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG  148 (674)
Q Consensus        69 ~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~  148 (674)
                      ..++|+|+||||||+.++|+.+.      ..|++||||||++.++.........|++++|+.+||++||.++++.....+
T Consensus       132 L~~kr~LlVLDDv~~~~~~~~~~------~~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~  205 (277)
T d2a5yb3         132 IDRPNTLFVFDDVVQEETIRWAQ------ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGE  205 (277)
T ss_dssp             TTSTTEEEEEEEECCHHHHHHHH------HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--C
T ss_pred             hccCCeeEecchhhHHhhhhhhc------ccCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHHHhCCccCch
Confidence            67799999999999998887553      238899999999999864445557899999999999999999998666667


Q ss_pred             chhHHHHHHHHHhCCchhhHHHHHHHHhcCChHHHHHHHHHhccccccCCCcccccceeeeeeecccCCChHHHHHHHHH
Q 048755          149 ELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFLL  228 (674)
Q Consensus       149 ~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~l~~~f~~  228 (674)
                      ..++++++|+++|+|+|||++++|+.++.++.+.|.+..+.+.....        ..+..++.+||+.||++ +|.||.+
T Consensus       206 ~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~--------~~v~~il~~sY~~L~~~-lk~c~~~  276 (277)
T d2a5yb3         206 KEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGL--------VGVECITPYSYKSLAMA-LQRCVEV  276 (277)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCS--------STTCCCSSSSSSSHHHH-HHHHHHT
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccHH-HHHHHHh
Confidence            78899999999999999999999999999999999998888754322        55778999999999999 9999975
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure