Citrus Sinensis ID: 048759

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
Protein Sequence
MPSVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGSEVVSDEEDESDDEVLYKRTVSL
Secondary Structure (PSIPRED)
cccccHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHcccccccccHHcHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccHHHcccccccccccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccEEcccHHHHHcHHHHHHHHHHccccccHcccccccccHHHHHHHHHHHHHccccHHHHHHcccHEcccccccHHHHHHHHHHccccHHHHHHHHHHcccEEEccHHHHcHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHccccHHHHHHHHHHcccHccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEcccHHHHcHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHcccHHHHHHccHHHcccHHHHcHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHcHHccccccccccccccEcccccccccccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mpsvtwgvvqgkkekLVNRVKICDYLkslgiipdelenlelpstIEVMEERVMFLQKLGltiddineyplmlgcsmrknmipVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKflrgldvekedIGYVLMKypellgfklegtMSTSVAYLVSIgvsprdigpmvtqypyflgmrvgtMIKPLVDYLVSLGLPIKILARMLEKRVYILGYdleetvkpnvdclisFGIRREKLASVIAQYPqiiglplkakmSSQLYFFNLklkidpdeFAQVVEKMPQVVSLNQHVIMKSVEFllgrgipsgdlaKMVVQCPQLIACRVELMKNSFYFFksemgrpikeliefpeyfTYSLESRIKPRYqrlqskgircsmnwflncsdQRFEERLLGnyiesessgpsfciggklvlpgsevvsdeedesddeVLYKRTVSL
Flexible Loop (DISEMBL)
mpsvtwgvvqgkkeklvnrVKICDYLkslgiipdelenleLPSTIEVMEERVMFLQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIgvsprdigPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILgydleetvkpnVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLqskgircsmNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGSevvsdeedesddevlykrtvsl
Low Complexity Region (SEG)
MPSVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGsevvsdeedesddevLYKRTVSL
Disordered region (IsUnstruct)
****TWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIES***GPSFCIGGKLVL*************************
Disordered Region (DISOPRED)
****TWGVVQGKKEK*VNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIG*K********************LYKRTVSL
Disordered Region (DISEMBL)
********VQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGSE*********************
Disordered Region (DISPRO)
**SVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGSEVVS**EDESDDEVLYKRTVSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGSEVVSDEEDESDDEVLYKRTVSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	442	2.2.26 [Sep-21-2011]
Q5ZJC8	405	mTERF domain-containing p	yes	no	0.346	0.377	0.282	5e-06
Q8R3J4	412	mTERF domain-containing p	yes	no	0.481	0.516	0.211	9e-05
Q6P6Q6	409	mTERF domain-containing p	yes	no	0.504	0.545	0.220	0.0005

>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus GN=MTERFD1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 3/156 (1%)

Query: 115 ELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVT 174
           ++  ++ FL+ + +E   +G  L K P +LG +LE  + T VAYL S      +I  MV+
Sbjct: 175 DITKILLFLKDVGIEDNQLGPFLTKNPYILGEELEA-LETRVAYLKSKKFGNAEITQMVS 233

Query: 175 QYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVD-CLIS 233
           + PY L   V  +   L  +   LGL +K    ++ +   +L   LE  VK N+  C + 
Sbjct: 234 RAPYLLLFSVERLDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLE-PVKENLQVCQVE 292

Query: 234 FGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNL 269
           FG  R ++  +  + P+I+    K    +  Y  N+
Sbjct: 293 FGFERNEVQQIAFKTPKILTASKKRLRQTFDYLHNI 328

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.
Gallus gallus (taxid: 9031)

>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus GN=Mterfd1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 102/217 (47%), Gaps = 4/217 (1%)

Query: 153 STSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKR 212
           S ++  LV +GV    I          L +     IK ++ +L  LGL    L   L K 
Sbjct: 148 SKTLQKLVQLGVDLSKIEKHPDAANLLLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKN 207

Query: 213 VYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLK 272
             I   DLE  +K  V  L S    +  +A ++   P ++   ++ ++ ++L FF  +L+
Sbjct: 208 YAIFSEDLE-NLKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSVE-RLDNRLGFFQKELE 265

Query: 273 IDPDEFAQVVEKMPQVVSLNQHVIMKSVE-FLLGRGIPSGDLAKMVVQCPQLIACRVELM 331
           ++  +   +V ++P++++ +   + ++++ + L  G    ++  MV++ P+++      +
Sbjct: 266 LNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKMLTANKRKL 325

Query: 332 KNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRY 368
              F +  + M  P   +++FP+ F   +  +IK R+
Sbjct: 326 TEIFDYVHNVMNIPHHIIVKFPQLFNTRV-FKIKERH 361

Binds promoter DNA (By similarity). Regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Mus musculus (taxid: 10090)

>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Mterfd1 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 54/277 (19%)

Query: 69  PLMLGCSMRKNMIPVFSYLEKI---GIAKSKLGEFVKKYPQV----LHASVVVELMPVVK 121
           PL L  S   + +     L+K+   G+  SK    ++K+P V    L  +   ++  ++ 
Sbjct: 130 PLPLSSSTLADYVDHSETLQKLVQLGVDLSK----IEKHPDVANLLLRLNFEKDIKQILL 185

Query: 122 FLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLG 181
           FL+ L +E   +G  L K   +    LE  + T VAYL S   S  DI  MV   P+ L 
Sbjct: 186 FLKDLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIACMVKNAPFLLS 244

Query: 182 MRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKL 241
             V                        L+ R+     +LE +VK   D            
Sbjct: 245 FSV----------------------ERLDNRLGFFQKELELSVKKTRD------------ 270

Query: 242 ASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVE 301
             ++ + P+++   L+  +   +  + L+L    +E   +V K+P++++ N+  + ++ +
Sbjct: 271 --LVVRLPRLLTGSLEP-VKENMKVYRLELGFKHNEIQHMVTKIPKMLTANKRKLTETFD 327

Query: 302 FLLG-RGIPSGDLAKMVVQCPQLIACRVELMKNSFYF 337
           ++     IP      ++V+ PQ+   RV  +K    F
Sbjct: 328 YVHNVMNIPHH----IIVKFPQVFNTRVFKIKERHLF 360

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
224135875	514	predicted protein [Populus trichocarpa]	1.0	0.859	0.826	0.0
449446744	516	PREDICTED: uncharacterized protein LOC10	0.997	0.854	0.805	0.0
449489513	516	PREDICTED: uncharacterized protein LOC10	0.997	0.854	0.803	0.0
225444926	481	PREDICTED: uncharacterized protein LOC10	1.0	0.918	0.834	0.0
356524605	499	PREDICTED: uncharacterized protein LOC10	1.0	0.885	0.816	0.0
18406426	507	transcription termination factor domain-	1.0	0.871	0.805	0.0
297828125	508	hypothetical protein ARALYDRAFT_903808 [	1.0	0.870	0.805	0.0
115449087	485	Os02g0783100 [Oryza sativa Japonica Grou	1.0	0.911	0.661	1e-177
226502300	489	putative mitochondrial transcription ter	0.995	0.899	0.654	1e-172
195614866	489	mTERF family protein [Zea mays]	0.995	0.899	0.650	1e-171

>gi|224135875|ref|XP_002327325.1| predicted protein [Populus trichocarpa] gi|222835695|gb|EEE74130.1| predicted protein [Populus trichocarpa]

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/445 (82%), Positives = 411/445 (92%), Gaps = 3/445 (0%)

Query: 1   MPSVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGL 60
           MPSVTWGVVQGKKEKLVNRV ICDYLK LGIIPDELE+LELPST+EVM+ERV FLQ++GL
Sbjct: 70  MPSVTWGVVQGKKEKLVNRVIICDYLKGLGIIPDELESLELPSTVEVMKERVEFLQRMGL 129

Query: 61  TIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVV 120
           TIDDINEYPLMLGCS+RKN+IPV  YLEKIGI++SKLGEFVK YPQVLHASVVVEL PV+
Sbjct: 130 TIDDINEYPLMLGCSVRKNIIPVLGYLEKIGISRSKLGEFVKSYPQVLHASVVVELQPVI 189

Query: 121 KFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFL 180
           KFLRGLDV+K DIGYVL KYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPY L
Sbjct: 190 KFLRGLDVDKLDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLL 249

Query: 181 GMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREK 240
           GMRVGTMIKPLVDYLVSLGLP KI+ARMLEKR Y+LGYDL+ETVKPNVDCLISFGIRRE 
Sbjct: 250 GMRVGTMIKPLVDYLVSLGLPKKIVARMLEKRPYVLGYDLQETVKPNVDCLISFGIRREV 309

Query: 241 LASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSV 300
           LAS++AQYP I+GLPLKAK+SSQ YFFNLKLKIDP+ FA+V+EKMPQ+VSLNQ+VIMK V
Sbjct: 310 LASIVAQYPPILGLPLKAKLSSQQYFFNLKLKIDPERFARVIEKMPQIVSLNQNVIMKPV 369

Query: 301 EFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSL 360
           +FLL R IPS D+A MV++CPQL+A RV LMKNS+YFFKSEMGRP+KEL+EFPEYFTYSL
Sbjct: 370 QFLLERAIPSEDVATMVIKCPQLLALRVPLMKNSYYFFKSEMGRPLKELVEFPEYFTYSL 429

Query: 361 ESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGS 420
           ESRIKPRY+ L+SKGIR S+NWFLNCSD+RFEERL G+YIESES GPSFC+GGKL LPG 
Sbjct: 430 ESRIKPRYEMLKSKGIRSSLNWFLNCSDKRFEERLEGDYIESESLGPSFCMGGKLELPGC 489

Query: 421 EVVS---DEEDESDDEVLYKRTVSL 442
           E++S   DE D+ +DEVL++RTVSL
Sbjct: 490 EILSDEEDEIDDDEDEVLFRRTVSL 514

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446744|ref|XP_004141131.1| PREDICTED: uncharacterized protein LOC101203314 [Cucumis sativus]

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/443 (80%), Positives = 405/443 (91%), Gaps = 2/443 (0%)

Query: 1   MPSVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGL 60
           MP+VTWG VQG+KEKLV+RV ICDYLKSLGI+PDELE+LELPST+EVM ERV FLQKLGL
Sbjct: 75  MPTVTWGAVQGRKEKLVSRVIICDYLKSLGIVPDELEHLELPSTVEVMRERVEFLQKLGL 134

Query: 61  TIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVV 120
           TIDDINE+PL+LGCS+RKNMIPV  YLEKIGI + KLGEF+K YPQVLHASV+VEL PV+
Sbjct: 135 TIDDINEFPLILGCSVRKNMIPVLGYLEKIGIPRPKLGEFIKNYPQVLHASVIVELAPVI 194

Query: 121 KFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFL 180
           K LRGLDVEKEDIGYVL KYPELLGFKLEGTMSTSVAYLVSIGV+PRDIGPMVTQYP+FL
Sbjct: 195 KLLRGLDVEKEDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPFFL 254

Query: 181 GMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREK 240
           GMRVGTMIKPLV+++VSLGLP KI+ARMLEKR YILGYDL ETVKPN+DCL+SFGIR+E 
Sbjct: 255 GMRVGTMIKPLVEFIVSLGLPKKIVARMLEKRAYILGYDLGETVKPNIDCLLSFGIRKEL 314

Query: 241 LASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSV 300
           L SVIAQYP I+GLPLKAKMSSQ +FF+LKLKIDP  FAQV+EKMPQ+VSL+QHVI+K  
Sbjct: 315 LPSVIAQYPLILGLPLKAKMSSQQFFFDLKLKIDPAGFAQVIEKMPQMVSLHQHVIIKPA 374

Query: 301 EFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSL 360
           EFLL RGI S D+AKM+VQCPQL+ACRV LMKNS+YFFKS+MGRPIKEL++FPEYFTYSL
Sbjct: 375 EFLLERGIASSDVAKMIVQCPQLLACRVPLMKNSYYFFKSDMGRPIKELVDFPEYFTYSL 434

Query: 361 ESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGS 420
           ESRIKPRYQRLQSKGI CS+NWFLNCSDQRFEERL G +IE+ES  PSFC+GG+L LP +
Sbjct: 435 ESRIKPRYQRLQSKGISCSLNWFLNCSDQRFEERLKGEFIETESLRPSFCMGGRLELPSN 494

Query: 421 E-VVSDEEDESDDEVLYKRTVSL 442
           E +VSD+EDE D++ L++R VSL
Sbjct: 495 ETIVSDDEDECDEQ-LHRRIVSL 516

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489513|ref|XP_004158334.1| PREDICTED: uncharacterized protein LOC101224846 [Cucumis sativus]

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/443 (80%), Positives = 405/443 (91%), Gaps = 2/443 (0%)

Query: 1   MPSVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGL 60
           MP+VTWG VQG+KEKLV+RV ICDYLKSLGI+PDELE+LELPST+EVM ERV FLQKLGL
Sbjct: 75  MPTVTWGAVQGRKEKLVSRVIICDYLKSLGIVPDELEHLELPSTVEVMRERVEFLQKLGL 134

Query: 61  TIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVV 120
           TIDDINE+PL+LGCS+RKNMIPV  YLEKIGI + KLGEF+K YPQVLHASV+VEL PV+
Sbjct: 135 TIDDINEFPLILGCSVRKNMIPVLGYLEKIGIPRPKLGEFIKNYPQVLHASVIVELAPVI 194

Query: 121 KFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFL 180
           K LRGLDVEKEDIGYVL KYPELLGFKLEGTMSTSVAYLVSIGV+PRDIGPMVTQYP+FL
Sbjct: 195 KLLRGLDVEKEDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPFFL 254

Query: 181 GMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREK 240
           GMRVGTMIKPLV+++VSLGLP KI+ARMLEKR YILGYDL ETVKPN+DCL+SFGIR+E 
Sbjct: 255 GMRVGTMIKPLVEFIVSLGLPKKIVARMLEKRAYILGYDLGETVKPNIDCLLSFGIRKEL 314

Query: 241 LASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSV 300
           L SVIAQYP I+GLPLKAK+SSQ +FF+LKLKIDP  FAQV+EKMPQ+VSL+QHVI+K  
Sbjct: 315 LPSVIAQYPLILGLPLKAKLSSQQFFFDLKLKIDPAGFAQVIEKMPQMVSLHQHVIIKPA 374

Query: 301 EFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSL 360
           EFLL RGI S D+AKM+VQCPQL+ACRV LMKNS+YFFKS+MGRPIKEL++FPEYFTYSL
Sbjct: 375 EFLLERGIASSDVAKMIVQCPQLLACRVPLMKNSYYFFKSDMGRPIKELVDFPEYFTYSL 434

Query: 361 ESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGS 420
           ESRIKPRYQRLQSKGI CS+NWFLNCSDQRFEERL G +IE+ES  PSFC+GG+L LP +
Sbjct: 435 ESRIKPRYQRLQSKGISCSLNWFLNCSDQRFEERLKGEFIETESLRPSFCMGGRLELPSN 494

Query: 421 E-VVSDEEDESDDEVLYKRTVSL 442
           E +VSD+EDE D++ L++R VSL
Sbjct: 495 ETIVSDDEDECDEQ-LHRRIVSL 516

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444926|ref|XP_002279655.1| PREDICTED: uncharacterized protein LOC100255927 [Vitis vinifera]

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/442 (83%), Positives = 410/442 (92%)

Query: 1   MPSVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGL 60
           MPSVTWGVV G+KE+LV+RV I DYLK+LGIIPDELE +ELPST+EVM ERV FLQKLG+
Sbjct: 40  MPSVTWGVVLGRKERLVSRVIISDYLKTLGIIPDELEQVELPSTVEVMRERVEFLQKLGV 99

Query: 61  TIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVV 120
           TID +NEYPLMLGCS+RKNMIPV  YLEKIGI +SKLGEFV  YPQVLHASVVVEL PVV
Sbjct: 100 TIDHLNEYPLMLGCSVRKNMIPVLGYLEKIGIPRSKLGEFVVNYPQVLHASVVVELAPVV 159

Query: 121 KFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFL 180
           KFLRGLDV+K+DIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFL
Sbjct: 160 KFLRGLDVDKQDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFL 219

Query: 181 GMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREK 240
           GMRVGT+IKP+VDYLVSLGLP K+LARM EKR Y+LGYDLEE +KPNVDCL+SFGIRRE 
Sbjct: 220 GMRVGTVIKPIVDYLVSLGLPKKVLARMFEKRAYVLGYDLEECIKPNVDCLVSFGIRREA 279

Query: 241 LASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSV 300
           LASVIAQ+PQI+GLPLKAK+SSQ YFFNLKLKIDPD FA+V+E+MPQ+VSLNQ+VIMK V
Sbjct: 280 LASVIAQFPQILGLPLKAKLSSQQYFFNLKLKIDPDGFARVIERMPQIVSLNQNVIMKPV 339

Query: 301 EFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSL 360
           EFLLGRGIP+ D+AKMVV+CPQL+A RVELMKN +YFFKSEMGR +KEL+EFPEYFTYSL
Sbjct: 340 EFLLGRGIPAVDVAKMVVKCPQLVALRVELMKNGYYFFKSEMGRQVKELVEFPEYFTYSL 399

Query: 361 ESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGS 420
           ESRIKPRYQRLQSKG+R S++WFLNCSDQRFEERL  +YIE E+ GPSFC+GGKL LPG+
Sbjct: 400 ESRIKPRYQRLQSKGVRSSLDWFLNCSDQRFEERLQADYIEMETIGPSFCMGGKLQLPGN 459

Query: 421 EVVSDEEDESDDEVLYKRTVSL 442
           EVVSDEEDESDDE LY+RTVSL
Sbjct: 460 EVVSDEEDESDDEELYRRTVSL 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524605|ref|XP_003530919.1| PREDICTED: uncharacterized protein LOC100809590 [Glycine max]

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/442 (81%), Positives = 408/442 (92%)

Query: 1   MPSVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGL 60
           MPSVTWGV+QG+KEKLV+RV I DYLK LGIIPDEL +LELPST++VM ERV FLQKLGL
Sbjct: 58  MPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELHDLELPSTVDVMRERVEFLQKLGL 117

Query: 61  TIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVV 120
           T+DDIN YPLMLGCS+RKNMIPV  YLEKIGIA+ KLG FVK YPQVLHASV+VEL PVV
Sbjct: 118 TVDDINNYPLMLGCSVRKNMIPVLGYLEKIGIARPKLGGFVKNYPQVLHASVIVELAPVV 177

Query: 121 KFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFL 180
           KFLRGLDVEK+DIGYVL KYPELLGFKLEGTMSTSVAYLVSIGV+PRDIGPMVTQYPY L
Sbjct: 178 KFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLL 237

Query: 181 GMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREK 240
           GMRVGT+IKP++DYLV LGLP K+LARMLEKR Y+LGYDLEETVKPNV+CLISFG+ R+ 
Sbjct: 238 GMRVGTVIKPMIDYLVDLGLPKKVLARMLEKRAYVLGYDLEETVKPNVECLISFGVGRDC 297

Query: 241 LASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSV 300
           LAS+IAQYPQI+GLPLKAK+S+Q YFF+LKLK+DP+ FA+VVE MPQVVSL+QHVIMK V
Sbjct: 298 LASIIAQYPQILGLPLKAKLSTQQYFFSLKLKVDPEGFARVVENMPQVVSLHQHVIMKPV 357

Query: 301 EFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSL 360
           EFLLGR IP+ D+A MVV+CPQL+A RVELMKNS+YFFKSEMGRP++EL+EFPEYFTYSL
Sbjct: 358 EFLLGRTIPAQDVASMVVKCPQLVALRVELMKNSYYFFKSEMGRPLQELVEFPEYFTYSL 417

Query: 361 ESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGS 420
           ESRIKPRYQRL+SKGIRCS+NW LNCSDQRFEERL G+YIE+ES GP FC+GGKL LPG+
Sbjct: 418 ESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGHYIETESVGPRFCMGGKLELPGN 477

Query: 421 EVVSDEEDESDDEVLYKRTVSL 442
            +VSDEE+ESDDE+LY+RTVSL
Sbjct: 478 GLVSDEEEESDDELLYRRTVSL 499

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406426|ref|NP_566005.1| transcription termination factor domain-containing protein [Arabidopsis thaliana] gi|3212859|gb|AAC23410.1| expressed protein [Arabidopsis thaliana] gi|14532592|gb|AAK64024.1| unknown protein [Arabidopsis thaliana] gi|19310761|gb|AAL85111.1| unknown protein [Arabidopsis thaliana] gi|330255268|gb|AEC10362.1| transcription termination factor domain-containing protein [Arabidopsis thaliana]

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/443 (80%), Positives = 411/443 (92%), Gaps = 1/443 (0%)

Query: 1   MPSVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGL 60
           MP+VTWGV+QGKKEKLVNRVKICDYLK LGII DELE++ELPSTIEVM ERV FLQKLGL
Sbjct: 65  MPTVTWGVIQGKKEKLVNRVKICDYLKGLGIITDELESIELPSTIEVMCERVEFLQKLGL 124

Query: 61  TIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVV 120
           TIDDINEYPLMLGCS+RKN+IPV +YLEKIGI++SKLGEFVK YPQVLHASVVVEL PVV
Sbjct: 125 TIDDINEYPLMLGCSVRKNLIPVLAYLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVV 184

Query: 121 KFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFL 180
           KFLRGLDVEK+D+GYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPY L
Sbjct: 185 KFLRGLDVEKQDLGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLL 244

Query: 181 GMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREK 240
           GMRVGTMIKPLVDYL+S+GLP KI+ARMLEKR YI+GY+LEETVKPNVDCLISFG+++E 
Sbjct: 245 GMRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLISFGVKKEL 304

Query: 241 LASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSV 300
           L  +IAQYPQI+GLP+KAKMS+Q YFF+LKLKIDP+ FA+VVEKMPQ+VSL Q+VIMK +
Sbjct: 305 LPLLIAQYPQILGLPVKAKMSTQQYFFSLKLKIDPEGFARVVEKMPQIVSLKQNVIMKPI 364

Query: 301 EFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSL 360
           EFLLGR     D+AKMVV+CPQ++  RVELMKNS+YF+K+EMGRP+KEL+E+PEYFTYSL
Sbjct: 365 EFLLGRAFQVEDIAKMVVRCPQILCSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYSL 424

Query: 361 ESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGS 420
           ESRIKPRYQ+LQSKGIR S+NWFLNCSDQRFEERL GN+I+ ++ GP+F +GGKL +PG 
Sbjct: 425 ESRIKPRYQKLQSKGIRSSLNWFLNCSDQRFEERLQGNFIDPDTEGPTFDMGGKLEMPGG 484

Query: 421 EVVS-DEEDESDDEVLYKRTVSL 442
           E+V+ +EEDESDDEVLY+RT++L
Sbjct: 485 EIVTDEEEDESDDEVLYRRTLTL 507

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828125|ref|XP_002881945.1| hypothetical protein ARALYDRAFT_903808 [Arabidopsis lyrata subsp. lyrata] gi|297327784|gb|EFH58204.1| hypothetical protein ARALYDRAFT_903808 [Arabidopsis lyrata subsp. lyrata]

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/443 (80%), Positives = 409/443 (92%), Gaps = 1/443 (0%)

Query: 1   MPSVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGL 60
           MP+VTWGV+QGKKEKLVNRVKICDYLK LGII DELE++ELPSTIEVM ERV FLQKLGL
Sbjct: 66  MPTVTWGVIQGKKEKLVNRVKICDYLKGLGIITDELESIELPSTIEVMCERVEFLQKLGL 125

Query: 61  TIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVV 120
           TIDDINEYPLMLGCS+RKN+IPV +YLEKIGI++SKLGEFVK YPQVLHASVVVEL PVV
Sbjct: 126 TIDDINEYPLMLGCSVRKNLIPVLAYLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVV 185

Query: 121 KFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFL 180
           KFLRGLDVEK+D+GYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPY L
Sbjct: 186 KFLRGLDVEKQDLGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLL 245

Query: 181 GMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREK 240
           GMRVGTMIKPLVDYL+S+GLP KI+ARMLEKR YI+GY+LEETVKPNVDCLISFG+++E 
Sbjct: 246 GMRVGTMIKPLVDYLISIGLPKKIVARMLEKRAYIVGYNLEETVKPNVDCLISFGVKKEL 305

Query: 241 LASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSV 300
           L  +IAQYPQI+GLP+KAKMS+Q YFF+LKLKIDP+ FA+VVEKMPQ+VSL Q+VIMK +
Sbjct: 306 LPLLIAQYPQILGLPVKAKMSTQQYFFSLKLKIDPEGFARVVEKMPQIVSLKQNVIMKPI 365

Query: 301 EFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSL 360
           EFLLGR     D+AKMVV+CPQ++  RVELMKNS+YF+K+EMGRP+KEL+E+PEYFTYSL
Sbjct: 366 EFLLGRAFQVEDIAKMVVRCPQILCSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYSL 425

Query: 361 ESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGS 420
           ESRIKPRYQ+LQSKGIR S+NWFLNCSDQRFEERL GN+I+ ++ GP F +GGKL +PG 
Sbjct: 426 ESRIKPRYQKLQSKGIRSSLNWFLNCSDQRFEERLQGNFIDPDTEGPMFDMGGKLEMPGG 485

Query: 421 EVV-SDEEDESDDEVLYKRTVSL 442
           E+V  +EEDESDDEVLY+RT++L
Sbjct: 486 EIVSDEEEDESDDEVLYRRTLTL 508

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115449087|ref|NP_001048323.1| Os02g0783100 [Oryza sativa Japonica Group] gi|47497486|dbj|BAD19540.1| mitochondrial transcription termination factor-like [Oryza sativa Japonica Group] gi|113537854|dbj|BAF10237.1| Os02g0783100 [Oryza sativa Japonica Group] gi|215686737|dbj|BAG89587.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 295/446 (66%), Positives = 380/446 (85%), Gaps = 4/446 (0%)

Query: 1   MPSVTWGVVQGKKEKLVNRVKICDYLKSLGII--PDELENLELPSTIEVMEERVMFLQKL 58
           MPSVTWGV+QG+KE+LV+RV   D+L+S G+     ELE +ELPS++EV++ER+ FL +L
Sbjct: 40  MPSVTWGVIQGRKERLVSRVLALDFLRSAGVSDPAGELEAVELPSSLEVLQERLDFLLRL 99

Query: 59  GLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMP 118
           GL+ DD++ YPL+L CS+RKN IPV SYLEK+G+ +++L  FV+ YP  LHASV V+L P
Sbjct: 100 GLSTDDLSAYPLLLACSLRKNAIPVLSYLEKLGVTRARLAAFVRAYPACLHASVAVDLTP 159

Query: 119 VVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSI-GVSPRDIGPMVTQYP 177
           VVK LRGLDV+++D+  VL +YP++LG K +GT+STSVAYLV I GV+PRDIGPMVT +P
Sbjct: 160 VVKSLRGLDVDRQDLPRVLERYPDILGLKPDGTISTSVAYLVGIVGVAPRDIGPMVTHFP 219

Query: 178 YFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIR 237
           +FLGMRVGT IKPL +Y+ SLGLP++ILAR+LEKR YILGYDLEETVKPNV+ L+SFGIR
Sbjct: 220 FFLGMRVGTTIKPLCEYITSLGLPMRILARILEKRPYILGYDLEETVKPNVEALLSFGIR 279

Query: 238 REKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIM 297
           +E L  VIAQYP I+GLPLK K+++Q YFFNLKL+IDPD FA  +EK+PQ+VSL+Q++I+
Sbjct: 280 KEMLPLVIAQYPPILGLPLKTKLAAQQYFFNLKLQIDPDAFACAIEKLPQLVSLHQNIIL 339

Query: 298 KSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFT 357
           K VEFL GRGI + D+A+MVV+CPQ++  R+ELMKNS YFFKSEM RPI EL+++PEYFT
Sbjct: 340 KLVEFLRGRGISNEDVARMVVRCPQILLLRMELMKNSLYFFKSEMKRPISELLDYPEYFT 399

Query: 358 YSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVL 417
           YSLESRIKPRY R+ +KGIRCS++WFLNCSDQRFEER+ G++IE ++ GPSF +GGKL +
Sbjct: 400 YSLESRIKPRYMRVSTKGIRCSLDWFLNCSDQRFEERMRGDFIEGDAPGPSFTMGGKLQM 459

Query: 418 PGSEVVSDEED-ESDDEVLYKRTVSL 442
           PGS++VSD+++ ESDDEVLY+RTV L
Sbjct: 460 PGSQLVSDDDNAESDDEVLYRRTVML 485

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226502300|ref|NP_001145894.1| putative mitochondrial transcription termination factor family protein isoform 1 [Zea mays] gi|219884853|gb|ACL52801.1| unknown [Zea mays] gi|413924309|gb|AFW64241.1| putative mitochondrial transcription termination factor family protein isoform 1 [Zea mays] gi|413924310|gb|AFW64242.1| putative mitochondrial transcription termination factor family protein isoform 2 [Zea mays]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 290/443 (65%), Positives = 380/443 (85%), Gaps = 3/443 (0%)

Query: 1   MPSVTWGVVQGKKEKLVNRVKICDYLKSLGII--PDELENLELPSTIEVMEERVMFLQKL 58
           MPSVTWGV+QG+KE+LV+RV   D+L+S G+     ELE +ELPS++EV++ER+ FL +L
Sbjct: 45  MPSVTWGVIQGRKERLVSRVLALDFLRSAGVSDPAGELEAVELPSSLEVLQERLDFLLRL 104

Query: 59  GLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMP 118
           GL+ DD++ YPL+L CS+RKN+IPV SYLEK+G+ +++L  FV+ YP  LHASV V+L P
Sbjct: 105 GLSTDDLSNYPLLLACSLRKNVIPVLSYLEKLGVTRARLAAFVRAYPACLHASVAVDLAP 164

Query: 119 VVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSI-GVSPRDIGPMVTQYP 177
           +VK LRGLDV+++D+  VL +YP++LG K +GT+STSVAYLV I GV+PRDIGPMVT +P
Sbjct: 165 MVKALRGLDVDRQDLPRVLERYPDVLGLKPDGTISTSVAYLVGIVGVAPRDIGPMVTHFP 224

Query: 178 YFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIR 237
           +FLGMRVGT IKP  DY+ SLGLP++ILAR+LEKR YILGYDLEETVKPNV+ L+SFGI+
Sbjct: 225 FFLGMRVGTTIKPFCDYITSLGLPMRILARILEKRPYILGYDLEETVKPNVEALLSFGIQ 284

Query: 238 REKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIM 297
           +E L  VIAQYP I+GLPLKAK+++Q YFF LKL+IDPD FA+V+EK+PQ+VSLNQ+VI+
Sbjct: 285 KEALPLVIAQYPSILGLPLKAKLAAQQYFFTLKLQIDPDGFARVIEKLPQLVSLNQNVIL 344

Query: 298 KSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFT 357
           K VEFL GRGI + D+A+MVV+CPQ++  R+ELMKNS YFFKSEM RP+ EL+E+PEYFT
Sbjct: 345 KPVEFLRGRGISNEDVARMVVRCPQILLLRIELMKNSLYFFKSEMKRPMSELLEYPEYFT 404

Query: 358 YSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVL 417
           YSLESRIKPRY R+ S+GI+CS++WFLNCSD RFE+R+ G++IE ++ GPSF +GGKL +
Sbjct: 405 YSLESRIKPRYMRVTSRGIKCSLDWFLNCSDMRFEDRMQGDFIEGDAPGPSFTMGGKLQM 464

Query: 418 PGSEVVSDEEDESDDEVLYKRTV 440
           PGS++VSD+++++DDEVLY+RTV
Sbjct: 465 PGSQLVSDDDEDTDDEVLYRRTV 487

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195614866|gb|ACG29263.1| mTERF family protein [Zea mays]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 288/443 (65%), Positives = 378/443 (85%), Gaps = 3/443 (0%)

Query: 1   MPSVTWGVVQGKKEKLVNRVKICDYLKSLGII--PDELENLELPSTIEVMEERVMFLQKL 58
           MPSVTWGV+QG+KE+LV+RV   D+L+S G+     ELE +ELPS++EV++ER+ FL +L
Sbjct: 45  MPSVTWGVIQGRKERLVSRVLALDFLRSAGVSDPAGELEAVELPSSLEVLQERLDFLLRL 104

Query: 59  GLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMP 118
           GL+ DD++ YPL+L CS+RKN+IPV SYLEK+G+ +++L  FV+ YP  LHASV V+L P
Sbjct: 105 GLSTDDLSNYPLLLACSLRKNVIPVLSYLEKLGVTRARLAAFVRAYPACLHASVAVDLAP 164

Query: 119 VVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSI-GVSPRDIGPMVTQYP 177
           +VK LRGLDV+++D+  VL +YP++LG K +GT+STSVAYLV I GV+PRDIGPMVT +P
Sbjct: 165 MVKALRGLDVDRQDLPRVLERYPDVLGLKPDGTISTSVAYLVGIVGVAPRDIGPMVTHFP 224

Query: 178 YFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIR 237
           +FLGMRVGT IKP  DY+ SLGLP++ILAR+LEKR YILGYDLEETVKPNV+ L+SFGI+
Sbjct: 225 FFLGMRVGTTIKPFCDYITSLGLPMRILARILEKRPYILGYDLEETVKPNVEALLSFGIQ 284

Query: 238 REKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIM 297
           +E L  VIAQYP I+GLPLKAK+++Q YFF LKL+IDPD  A+ +EK+PQ+VSLNQ+VI+
Sbjct: 285 KEALPLVIAQYPSILGLPLKAKLAAQQYFFTLKLQIDPDGIARAIEKLPQLVSLNQNVIL 344

Query: 298 KSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFT 357
           K VEFL GRGI + D+A+MVV+CPQ++  R+ELMKNS YFFKSEM RP+ EL+E+PEYFT
Sbjct: 345 KPVEFLRGRGISNEDVARMVVRCPQILLLRIELMKNSLYFFKSEMKRPMSELLEYPEYFT 404

Query: 358 YSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVL 417
           YSLESRIKPRY R+ S+GI+CS++WFLNCSD RFE+R+ G++IE ++ GPSF +GGKL +
Sbjct: 405 YSLESRIKPRYMRVTSRGIKCSLDWFLNCSDMRFEDRMQGDFIEGDAPGPSFTMGGKLQM 464

Query: 418 PGSEVVSDEEDESDDEVLYKRTV 440
           PGS++VSD+++++DDEVLY+RTV
Sbjct: 465 PGSQLVSDDDEDTDDEVLYRRTV 487

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	1.0	0.871	0.781	1.7e-187
TAIR|locus:2139394	541	BSM "AT4G02990" [Arabidopsis t	0.884	0.722	0.526	2.4e-115
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.719	0.496	0.259	2e-35
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.855	0.639	0.261	4.5e-33
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.642	0.576	0.264	1.4e-22
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.647	0.576	0.225	2.8e-18
TAIR|locus:2036858	418	AT1G61970 "AT1G61970" [Arabido	0.762	0.806	0.241	2.3e-17
TAIR|locus:2036868	418	AT1G61980 "AT1G61980" [Arabido	0.717	0.758	0.238	4e-14
TAIR|locus:2102827	450	AT3G46950 "AT3G46950" [Arabido	0.796	0.782	0.246	6.3e-14
TAIR|locus:2018057	437	AT1G62120 "AT1G62120" [Arabido	0.705	0.713	0.243	3.6e-13

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 1818 (645.0 bits), Expect = 1.7e-187, P = 1.7e-187
 Identities = 346/443 (78%), Positives = 397/443 (89%)

Query:     1 MPSVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGL 60
             MP+VTWGV+QGKKEKLVNRVKICDYLK LGII DELE++ELPSTIEVM ERV FLQKLGL
Sbjct:    65 MPTVTWGVIQGKKEKLVNRVKICDYLKGLGIITDELESIELPSTIEVMCERVEFLQKLGL 124

Query:    61 TIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVV 120
             TIDDINEYPLMLGCS+RKN+IPV +YLEKIGI++SKLGEFVK YPQVLHASVVVEL PVV
Sbjct:   125 TIDDINEYPLMLGCSVRKNLIPVLAYLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVV 184

Query:   121 KFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFL 180
             KFLRGLDVEK+D+GYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPY L
Sbjct:   185 KFLRGLDVEKQDLGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLL 244

Query:   181 GMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREK 240
             GMRVGTMIKPLVDYL+S+GLP KI+ARMLEKR YI+GY+LEETVKPNVDCLISFG+++E 
Sbjct:   245 GMRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLISFGVKKEL 304

Query:   241 LASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSV 300
             L  +IAQYPQI+GLP+KAKMS+Q YFF+LKLKIDP+ FA+VVEKMPQ+VSL Q+VIMK +
Sbjct:   305 LPLLIAQYPQILGLPVKAKMSTQQYFFSLKLKIDPEGFARVVEKMPQIVSLKQNVIMKPI 364

Query:   301 EFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSL 360
             EFLLGR     D+AKMVV+CPQ++  RVELMKNS+YF+K+EMGRP+KEL+E+PEYFTYSL
Sbjct:   365 EFLLGRAFQVEDIAKMVVRCPQILCSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYSL 424

Query:   361 ESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGX 420
             ESRIKPRYQ+LQSKGIR S+NWFLNCSDQRFEERL GN+I+ ++ GP+F +GGKL +PG 
Sbjct:   425 ESRIKPRYQKLQSKGIRSSLNWFLNCSDQRFEERLQGNFIDPDTEGPTFDMGGKLEMPGG 484

Query:   421 XXXXXXXXXXXXXX-LYKRTVSL 442
                            LY+RT++L
Sbjct:   485 EIVTDEEEDESDDEVLYRRTLTL 507

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2139394 BSM "AT4G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 206/391 (52%), Positives = 297/391 (75%)

Query:    13 KEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDINEYPLML 72
             KEK  NR K+ ++L+ +GI+PDEL+ LELP T +VM+ERV FL KLGLTI+DIN YPL+L
Sbjct:   112 KEKAANRAKVYEFLRGIGIVPDELDGLELPVTADVMKERVEFLHKLGLTIEDINNYPLVL 171

Query:    73 GCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKED 132
             GCS++KNM+PV  YL K+G+ KS   EF+++YPQVLH+SVV++L PVVK+L+GLD++  D
Sbjct:   172 GCSVKKNMVPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVIDLAPVVKYLQGLDIKPSD 231

Query:   133 IGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLV 192
             +  VL +YPE+LGFKLEGTMSTSVAYLV IGV+ R+IG ++T+YP  LGMRV  +IKPLV
Sbjct:   232 VPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVARIIKPLV 291

Query:   193 DYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQII 252
             +YL  LG+P    AR++EKR +ILG++L++TVKPNV  L  F +R   L S+IAQYP+II
Sbjct:   292 EYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRETSLPSIIAQYPEII 351

Query:   253 GLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGD 312
             G+ LK K+ +Q       + ++P++   ++E+MPQ VSL++  ++K ++FL   G     
Sbjct:   352 GIDLKPKLDTQRKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLKHIDFLTKCGFSIDQ 411

Query:   313 LAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQ 372
               +MV+ CPQ++A  + +MK SF +F+ EM RP+++L++FP +FTY LES +KPR++++ 
Sbjct:   412 TREMVIGCPQVLALNLGIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKII 471

Query:   373 SKGIRCSMNWFLNCSDQRFEERLLGNYIESE 403
              KGI+CS+ W LNCSD++FE+R+  + I+ E
Sbjct:   472 KKGIKCSLAWMLNCSDEKFEQRMSYDTIDIE 502

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008380 "RNA splicing" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0042793 "transcription from plastid promoter" evidence=IMP

GO:0042794 "rRNA transcription from plastid promoter" evidence=IMP

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 2.0e-35, P = 2.0e-35
 Identities = 83/320 (25%), Positives = 165/320 (51%)

Query:    77 RKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYV 136
             R+ +  +  YLE  G+ +  +G  V + P++L  S+  E+   V F   + + + D G +
Sbjct:   278 REELNEIVEYLESNGVRRDWMGYVVGRCPELLSFSME-EVKSRVDFFLKMGMNQNDFGTM 336

Query:   137 LMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLV 196
             +  YP+++GF     M   + YL   G+S  ++G ++   P+ +G  +    KPLV Y  
Sbjct:   337 VYDYPKIIGFFSFQVMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFY 396

Query:   197 SLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPL 256
              LG+P + + R+L  +  +   DLE+T+ P V  L   GI  E + +++ ++P ++   L
Sbjct:   397 YLGIPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSL 456

Query:   257 KAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMK-SVEFLLGRGIPSGDLAK 315
               K+   + F   +  +   +  +V+   P ++  +    ++ ++ + +  GI    L +
Sbjct:   457 YKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGE 516

Query:   316 MVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKG 375
             M+   P L+   V+ ++  + + +  M RP+++LIEFP +F+YSLE RI PR+  +    
Sbjct:   517 MIADFPMLLRYNVDNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENR 576

Query:   376 IRCSMNWFLNCSDQRFEERL 395
             +   + + L C+D+ FE R+
Sbjct:   577 VNFKLRYMLACTDEEFERRV 596

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 4.5e-33, P = 4.5e-33
 Identities = 104/398 (26%), Positives = 198/398 (49%)

Query:    11 GKKEK-LVNRV--KICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDD--- 64
             G  EK LV +   ++  YL S+ I  D  + L   S  E +E R   L  LG ++D    
Sbjct:   192 GSDEKGLVGKYARRMMLYL-SIPIDEDVQQTL---SFFEKIEARRGGLDMLG-SVDASFR 246

Query:    65 --INEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKF 122
               +  +P +L  S   +M P+  +LE IGI K  LG+ +  YP ++          V   
Sbjct:   247 FLLESFPRLLLLSEENDMKPMVEFLESIGIPKYCLGKVLLLYPPIMLGKTEEIKRRVATA 306

Query:   123 LRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGM 182
             +  + V  +D G +L+KYP +L   ++   S   ++  S  V   DI   + ++P  LG 
Sbjct:   307 MEKVSVVNKDSGKLLLKYPWILSPSIQENYSHIGSFFYSESVLKMDIDHAIRRWPLLLGC 366

Query:   183 RVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLIS-FGIRREKL 241
                 M + +V     LG+  K + +++ K   +L    +E +K  V C +   G ++E +
Sbjct:   367 SASNM-EMMVKEFDKLGVRDKRMGKVIPKMPQLLLCKPQEFLK--VVCFLEDLGFQKEIV 423

Query:   242 ASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLN-QHVIMKSV 300
               ++ + P+I G  ++  +  +L F   +  +    F ++++K P+ +  +    ++  +
Sbjct:   424 GQILCRCPEIFGCSIEKTLQKKLIFLT-RFGVSTTHFPRIIKKYPEFLIYDADKTVLPRL 482

Query:   301 EFLLGRGIPSGDLAKMVVQCPQLIACRVE-LMKNSFYFFKSEMGRPIKELIEFPEYFTYS 359
             ++L+  GI   ++A M+ +   ++   ++ +++  F F  + M +P++E+IE+P YF+YS
Sbjct:   483 KYLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYS 542

Query:   360 LESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLG 397
             LE RIKPR++ L+ + I C++   L  +D+ F    LG
Sbjct:   543 LEKRIKPRFRVLKGRNIECTLQEMLGKNDEEFAADFLG 580

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 80/302 (26%), Positives = 149/302 (49%)

Query:   116 LMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQ 175
             L P   +L  L +  E I  +  K+     + L+G +   V +L+ +G+   DI  ++ +
Sbjct:   196 LRPQTLYLLDLGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLLDLGIPKSDIPTILCK 255

Query:   176 YPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFG 235
              P   G+ +   +KP + +L +LG+     A+++ +   IL Y  ++     V+ L   G
Sbjct:   256 RPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYSRQKLTS-TVEFLSQTG 314

Query:   236 IRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHV 295
             +  E++  ++ + P I+   ++ K+   + +F   L +D    A ++ + PQ   L+   
Sbjct:   315 LTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFR-SLNVD---VAVLLHRCPQTFGLSIES 370

Query:   296 IMKSV-EFLLGRGIPSGDLAKMVVQCPQL--IACRVELMKNSFYFFKSEMGRPIKELIEF 352
              +K V EF L +G    ++  M+ +   L   + +  +M    YF    M  P  EL++F
Sbjct:   371 NLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYF--QTMDYPKSELVKF 428

Query:   353 PEYFTYSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEE-------RLLGNYIESE-S 404
             P++F YSL+ RIKPRY+ +Q  G+R  +N  L+ S   FE+       +L+ N + +E S
Sbjct:   429 PQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVVKKKMMKLVSNNVIAEQS 488

Query:   405 SG 406
             SG
Sbjct:   489 SG 490

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 66/293 (22%), Positives = 145/293 (49%)

Query:    91 GIAKSKLGEFVKK-YPQVLHA-SVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKL 148
             G  K    ++V+K YP++     +  + +P++ +L    +++     +  ++   L   +
Sbjct:   157 GRGKMSSRKYVEKLYPRLAEEIDIDPKCVPLLDYLSTFGLKESHFVQMYERHMPSLQINV 216

Query:   149 EGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARM 208
                    + YL+S+GV  RDI  M+ + P  L   V   +K  + +L+ LG+P   + ++
Sbjct:   217 FSAQER-LDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQI 275

Query:   209 LEKRVYILGYDLEETVKPNVDCLIS-FGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFF 267
             +     +  Y +E +++P +  LI   GI+   +  V+   PQI+   L    +++  F 
Sbjct:   276 VAATPSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFL 335

Query:   268 NLKLKIDPDEFAQVVEKMPQVVSLN-QHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIAC 326
             + +L    D   ++V+K PQ++  +     +  + FL   G+ + D+ K++    Q+++ 
Sbjct:   336 SKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSL 395

Query:   327 RVE-LMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRL-QSKGIR 377
              +E  +K  + +  +E+   +  L ++P Y + SL+ RI+PR++ L + K +R
Sbjct:   396 SLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVELKKVR 448

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2036858 AT1G61970 "AT1G61970" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 87/360 (24%), Positives = 152/360 (42%)

Query:    55 LQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVV 114
             +  LGLT          +    + N   V + L   G   S++   ++ YPQ+L A    
Sbjct:    59 VDSLGLTTKLAESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIADAEK 118

Query:   115 ELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVT 174
              L P ++FL+       +I  ++   PE+LG K   T+S    ++    +        + 
Sbjct:   119 SLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLLEKSSKNEKLC 178

Query:   175 QYPYFLGMRVGTMIKPL--VDYLVSLGLPIKILARML-EKRVYILGYD-LEETVKPNVDC 230
                    +  G +   +  V  L  LG+P K+L  +L      + G +  EET+K  V+ 
Sbjct:   179 H-----SLPQGNLENKIRNVSVLRELGMPHKLLFSLLISDSQPVCGKEKFEETLKKVVE- 232

Query:   231 LISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVS 290
              + F     K    +    Q+I    +  +  +++ +   L  D  +     +K P  + 
Sbjct:   233 -MGFDPTTSKFVEAL----QVIYKMNEKTIEEKVHLYK-SLGFDVGDVWSSFKKWPISLR 286

Query:   291 LNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELI 350
             +++  ++ S+E  LG G    + AKMV   P  I    E +K    F   +M  P+K ++
Sbjct:   287 VSEKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNWPLKAVV 346

Query:   351 EFPEYFTYSLESRIKPR---YQRLQSKGIRC----SMNWFLNCSDQRFEERLLGNYIESE 403
               P  F YSLE RI PR    + L SKG+      S++  L C+ Q F  R + N+++ +
Sbjct:   347 SNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNRYVANHVDKQ 406

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036868 AT1G61980 "AT1G61980" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 4.0e-14, P = 4.0e-14
 Identities = 80/336 (23%), Positives = 148/336 (44%)

Query:    77 RKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYV 136
             + N   V + L   G   S++   V  YPQ+L A     L P ++FL+       ++  +
Sbjct:    81 KDNPDSVLNLLRSHGFTDSQISTIVTDYPQLLVADAEKSLAPKLQFLQSRGASSSELTEI 140

Query:   137 LMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLV 196
             +   P++LG +   T+S    ++    +          Q P+  G  +   I+ L   L 
Sbjct:   141 VSTVPKILGKRGHKTISVFYDFIKETLLDKSSKSEKSCQ-PFPQG-NLENKIRNL-SVLR 197

Query:   197 SLGLPIKILARMLEK-RVYILGYD-LEETVKPNVDCLISFGIRREKLASVIAQYPQIIGL 254
              LG+P K+L  +L    V + G +  EE++K  V+  + F     K    +    ++   
Sbjct:   198 ELGMPHKLLFPLLISCDVPVFGKEKFEESLKKVVE--MGFDPSTSKFVEALCVVQRLSDK 255

Query:   255 PLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLA 314
              ++ K+++  Y    +L  D +    V ++ P  ++ ++  I+ ++E  LG G    + +
Sbjct:   256 NIEDKVNA--Y---KRLGFDVEYVWTVFKRWPNFLTHSEKKILNTIETFLGLGFSRDEFS 310

Query:   315 KMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPR---YQRL 371
              ++ + PQ I    E++K    F   +M  P+K L+  P    YSLE R  PR    Q L
Sbjct:   311 VLIKRFPQGIGLSAEMVKKKTEFLVKKMNWPLKALVSNPAVLGYSLEKRTVPRGNVVQAL 370

Query:   372 QSKGI----RCSMNWFLNCSDQRFEERLLGNYIESE 403
              SKG+      S++    C+DQ F  R +  + + +
Sbjct:   371 ISKGLIGSELPSISRVFVCTDQVFLNRYVKRHEDKQ 406

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2102827 AT3G46950 "AT3G46950" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 6.3e-14, P = 6.3e-14
 Identities = 96/390 (24%), Positives = 174/390 (44%)

Query:    25 YL-KSLGIIPDELENLELPSTIE--VMEERVM-FLQKLGLTIDDINE----YPLMLGCSM 76
             YL +SLG+     E +    T E  V  + V+  L+  G     I+     YP +L    
Sbjct:    57 YLVESLGLTKKLAETISKKVTFEDKVNPDSVLNLLRSNGFKDSQISRIIRAYPRLLVTDA 116

Query:    77 RKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYV 136
              K++ P   +L+  G + S++ E V   P +L       +     F++  D+  +D   +
Sbjct:   117 EKSLRPKLQFLKSRGASSSEVIEIVSNVPTILDKKGEESVSLYYDFVK--DI-MQDGKSL 173

Query:   137 LMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDI-GPMVTQYPYFLGM-RVGTMIKPLVDY 194
              +  PE  G K  G    +++ L  +GV  + +   ++++Y    G  +    +K +VD 
Sbjct:   174 CISCPE--GKK--GNRIRNISVLRELGVPQKLLFSLLISRYQPVCGKEKFEESLKKVVD- 228

Query:   195 LVSLGL-PIKILARMLEKRVYILGYDL-EETVKPNVDCLISFGIRREKLASVIAQYPQII 252
                +G  P K  ++ +E  ++++ Y++ E+T++  V+     G    ++ ++  ++P  +
Sbjct:   229 ---MGFDPAK--SKFVEA-LHVV-YEMSEKTIEEKVNVYKRLGFSEAEIWAIFKKWPYFL 281

Query:   253 GLPLKAKMSSQLYFFNLK-LKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSG 311
                 K  +   L F  LK   +  +E   V++  PQ +  ++  I+ S+E  LG G    
Sbjct:   282 KFSEKKII---LMFETLKKCGLVEEEIISVLKSRPQCIRSSEQKILDSIEMFLGLGFSRD 338

Query:   312 DLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPR---Y 368
             D   MV + P   A   E ++  F      M  P++ ++  P    YSLE RI PR    
Sbjct:   339 DFKMMVKRYPCCTAYSGETLRKKFEVLVKMMNWPLEAVVMIPTVLGYSLEKRIVPRSNVI 398

Query:   369 QRLQSKGIRCSMN----WFLNCSDQRFEER 394
             + L SKG+  S N      L C+DQ F +R
Sbjct:   399 KALMSKGLIGSENPPISSVLVCTDQEFLKR 428

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018057 AT1G62120 "AT1G62120" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 3.6e-13, P = 3.6e-13
 Identities = 80/329 (24%), Positives = 143/329 (43%)

Query:    55 LQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVV 114
             +  LGL         + +    + N   V S L   G   S++   ++ +P++L      
Sbjct:    63 VDSLGLATKVAESISMKVSFDNKGNPDSVLSLLRSHGFTDSQISNIIRTFPRLLILDAEK 122

Query:   115 ELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVT 174
              L P ++FL+ +     ++   +   P++LG K +G   +     V + +   D    + 
Sbjct:   123 SLAPKLQFLQSIGASSSELTETVSAVPKILG-KRKGKSLSRYYDFVKV-IIEADKSSKLE 180

Query:   175 QYPYFL--GMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVY-ILGYD-LEETVKPNVDC 230
             +  + L  G +    I+ L+  L  +G+P ++L  +L      + G +  +E++K  V+ 
Sbjct:   181 KLCHSLPEGSKQENKIRNLL-VLREMGVPQRLLFSLLISDAGDVCGKEKFKESLKKAVE- 238

Query:   231 LISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVS 290
              I F       A+ +     + GL  K   +       L L +D D +A + +K P +++
Sbjct:   239 -IGFD---PTTATFVKALNVLYGLSDKGIENKFNACKRLGLAVD-DVWA-MFKKWPNILT 292

Query:   291 LNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELI 350
              ++  I  SVE  LG G    +   MV + PQ I    ELMK    F  +EM  P+K + 
Sbjct:   293 KSEKKIENSVETFLGLGFSRDEFLMMVKRFPQCIGYSTELMKTKTEFLVTEMNWPLKAVA 352

Query:   351 EFPEYFTYSLESRIKPRYQRLQ---SKGI 376
               P+   YSLE R  PR   ++   SKG+
Sbjct:   353 SIPQVLGYSLEKRTVPRCNVIKVLISKGL 381

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	442
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	0.0
pfam02536	345	pfam02536, mTERF, mTERF	1e-111

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score =  756 bits (1953), Expect = 0.0
 Identities = 299/443 (67%), Positives = 372/443 (83%), Gaps = 1/443 (0%)

Query: 1   MPSVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGL 60
            PSVTWG+++ KKEKLVNR K+ D+L+ +GI PDEL+ LELPST++VM ERV FL KLGL
Sbjct: 45  RPSVTWGLLEMKKEKLVNREKVLDFLRGIGIDPDELDGLELPSTVDVMRERVEFLHKLGL 104

Query: 61  TIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVV 120
           TI+DINEYPL+LGCS++KNMIPV  YLEK+G+ +S L E +++YPQVLHASVVV+L PVV
Sbjct: 105 TIEDINEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVV 164

Query: 121 KFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFL 180
           K+L+GLDV+++DI  VL +YPELLGFKLEGTMSTSVAYLVSIGV+PRDIGPM+T++P  L
Sbjct: 165 KYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEIL 224

Query: 181 GMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREK 240
           GMRVG  IKP VDYL SLGLP   +AR+LEKR YILG+DLEETVKPNV+CL+ FG+R+E 
Sbjct: 225 GMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEA 284

Query: 241 LASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSV 300
           L SVIAQYP I+GL LKAK++ Q Y+   KLKIDP++F +V+EK+PQ+VSLN++V +K V
Sbjct: 285 LPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHV 344

Query: 301 EFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSL 360
           EFL GRG  + D+AKMVV+CPQ++A  +E+MK S  FFK EM RP+KEL+EFP YFTY L
Sbjct: 345 EFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGL 404

Query: 361 ESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGKLVLPGS 420
           ESRIKPRY+R+  KGI+CS+ WFLNCSD +FE+R+ G++IE E   P F +GGKL +PGS
Sbjct: 405 ESRIKPRYERVAKKGIKCSLAWFLNCSDDKFEQRMSGDFIEGEEMEPLFSMGGKLEMPGS 464

Query: 421 EVVSDEE-DESDDEVLYKRTVSL 442
           E VSDEE D+ DDEVLY+RTVSL
Sbjct: 465 ESVSDEEDDDDDDEVLYRRTVSL 487

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  330 bits (848), Expect = e-111
 Identities = 120/354 (33%), Positives = 184/354 (51%), Gaps = 15/354 (4%)

Query: 46  EVMEERVMFLQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYP 105
             +   + F   L  TI  I +YPL+LG    KN+ P   +L+  G +KS+L + V   P
Sbjct: 1   LSLLRSLGFTDSLISTI--IRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVP 58

Query: 106 QVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVS 165
           ++L    V  +  V  FL+ + V   D    L KYPE L     G    +V+ L  +GV 
Sbjct: 59  KILGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVP 118

Query: 166 PR-DIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETV 224
           P+     ++++     G  V    +  +  +V +G       R++ KR  +L Y  ++T+
Sbjct: 119 PKLLFSLLISRPRPVCGKEV---FEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTI 175

Query: 225 KPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEK 284
           KPNV+ L S G   E + +++ + P+++G   K K+ +Q       L     EF  V++K
Sbjct: 176 KPNVEFLKSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLL----EFLSVIKK 231

Query: 285 MPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGR 344
           MPQ VS ++  I+  +EFLLG G    ++AKMV +CPQL+   VE +K    F   EM  
Sbjct: 232 MPQFVSYSEQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSVEKVKKKTEFLVKEMNW 291

Query: 345 PIKELIEFPEYFTYSLESRIKPR---YQRLQSKG--IRCSMNWFLNCSDQRFEE 393
           P+KEL+EFP+ F YSLE RIKPR    + L SKG  I  S++  L C+D+ F +
Sbjct: 292 PLKELVEFPQVFGYSLEKRIKPRCNVVKALMSKGKSILPSLSSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	442
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.96
KOG1267	413	consensus Mitochondrial transcription termination	99.89
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.18
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.79
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	94.76
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	82.93
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	82.56

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.4e-90  Score=715.05  Aligned_cols=442  Identities=68%  Similarity=1.157  Sum_probs=432.5

Q ss_pred             CCcceeeeEeeccccchhhHHHHHHHHhCCCCCccccCCCCCccHHHHHHHHHHHHHCCCCccccccCCccccccccccc
Q 048759            1 MPSVTWGVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDINEYPLMLGCSMRKNM   80 (442)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gi~~~~i~~~~~~~~~~~~~~~l~~L~~lG~s~~~i~~~P~ll~~~~~~~l   80 (442)
                      |||||||.|++|.++..+...+++||+++||+++.+.++.+|++++.++++++||+++|++.++|+++|.+|++++.+++
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgi~~~~l~~~~~p~~~~~~~~~l~~L~s~G~~~~~i~~~P~iL~~~v~~~l  124 (487)
T PLN03196         45 RPSVTWGLLEMKKEKLVNREKVLDFLRGIGIDPDELDGLELPSTVDVMRERVEFLHKLGLTIEDINEYPLVLGCSVKKNM  124 (487)
T ss_pred             CCchHHHHHHhhhhhhhhHHHHHHHHHHcCCCchhhhccCCCccHHHHHHHHHHHHHcCCChHHhccCcHHhhcCHhhhh
Confidence            79999999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHHHHHH
Q 048759           81 IPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLV  160 (442)
Q Consensus        81 ~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~  160 (442)
                      .|+++||.++|++..++++++.++|++|.+++++++.|+++||+++|++++++++++.++|++|++++++++.++++||+
T Consensus       125 ~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~  204 (487)
T PLN03196        125 IPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLV  204 (487)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCccccccccccCCceeecccccchHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCChHH
Q 048759          161 SIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREK  240 (442)
Q Consensus       161 ~lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~~~~  240 (442)
                      ++|++.++|++++.++|++|+++++++++|+++||+++|++.+++.+++.++|++|+++++++++|++++|+++|+++++
T Consensus       205 ~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~  284 (487)
T PLN03196        205 SIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEA  284 (487)
T ss_pred             HcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             HHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHHhcCCChhHHHHHHhhc
Q 048759          241 LASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQC  320 (442)
Q Consensus       241 i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~~~G~s~~~i~~~v~~~  320 (442)
                      +..++.++|.+++++.++++++++.|+.+++|++++++..++.++|.++++|+++|++|++||.++||+.++|..|++++
T Consensus       285 i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~~Gls~edI~~mv~k~  364 (487)
T PLN03196        285 LPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRC  364 (487)
T ss_pred             HHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccChhhhHhHHHHHHHHhCCChhhHhhcCcccccccccccHHHHHHHHHcCCCcchhhhhcCChhhHHHHHhhccc
Q 048759          321 PQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYI  400 (442)
Q Consensus       321 P~iL~~S~e~l~~r~~fL~~~mg~~~~~v~~~P~~L~~Slekri~pR~~~L~~~G~~~~l~~~l~~sd~~F~~~~~~~~~  400 (442)
                      |++|++|.++|++|++||+++||++.++|+++|+||+||||+||+|||++|+++|+.+++.+++++||++|+++|+.+|.
T Consensus       365 P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~L~~kGl~~sL~~~L~~sd~~F~~r~v~~y~  444 (487)
T PLN03196        365 PQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFEQRMSGDFI  444 (487)
T ss_pred             CceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHHHHHcCCCCCHHHHhccCHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCccccCCeecCCCCCCCCCcccCC-ccceeeecccCC
Q 048759          401 ESESSGPSFCIGGKLVLPGSEVVSDEEDES-DDEVLYKRTVSL  442 (442)
Q Consensus       401 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  442 (442)
                      |+|++.+.++.+|++..+|++.++|||+|| |||++|.|||++
T Consensus       445 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (487)
T PLN03196        445 EGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDEVLYRRTVSL  487 (487)
T ss_pred             cccccCCCcccCCcccCCCCccccCcccccchHHHHhhhhccC
Confidence            999999999999999999999988876654 556699999985

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=4.5e-55  Score=438.16  Aligned_cols=335  Identities=33%  Similarity=0.646  Sum_probs=266.2

Q ss_pred             HHHHHCCCCccccc----cCCccccccccccchHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHHHhCCC
Q 048759           53 MFLQKLGLTIDDIN----EYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDV  128 (442)
Q Consensus        53 ~~L~~lG~s~~~i~----~~P~ll~~~~~~~l~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~lG~  128 (442)
                      ++|+++||++.+|.    ++|.++.+++++++.|+++||.+.|++..+++++++++|.++.++.++++.|+++||+++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            57889999999986    69999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHhhcCcccccccchhHHHHHHHHHHhCCCccccccccccCCceeecccccchHHHHHHHHhcCCChHHHHHH
Q 048759          129 EKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARM  208 (442)
Q Consensus       129 ~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~~lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L~~lG~~~~~i~~~  208 (442)
                      +++++.+++.++|++|+.+.+.++.++++||+++|++.+.+.+++..+|..+...  +++++.++++.++|++++++.++
T Consensus        82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~v  159 (345)
T PF02536_consen   82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRV  159 (345)
T ss_dssp             -HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCC
T ss_pred             CHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhccc
Confidence            9999999999999999999888999999999999999988888888888876555  58999999999999999999999


Q ss_pred             HHhcchhcccCcccchhhhHHHHHhhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccc
Q 048759          209 LEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQV  288 (442)
Q Consensus       209 l~~~P~il~~s~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~i  288 (442)
                      +..+|+++..+.++.+++++++|+++|++.+++.+++.++|.++..+.++.+++...++ ...|...+   .++.++|.+
T Consensus       160 i~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~-~~~~~~~~---~~i~~~p~i  235 (345)
T PF02536_consen  160 IAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLL-SSGGVEEE---RVIKKFPQI  235 (345)
T ss_dssp             HHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC------------------------------
T ss_pred             ccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccc-cccccccc---ccccccccc
Confidence            99999888888778999999999999999999999999999999999998777665554 44555544   889999999


Q ss_pred             cchhhhhHHHHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhCCChhhHhhcCcccccccccccHHH-
Q 048759          289 VSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPR-  367 (442)
Q Consensus       289 l~~s~~~l~~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~~~v~~~P~~L~~Slekri~pR-  367 (442)
                      +..+.+++.++++||.++|||.+++++|+.++|++|++|.+++++|++||+++||++.++|+++|++|+||+|+||+|| 
T Consensus       236 l~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~  315 (345)
T PF02536_consen  236 LSLSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRY  315 (345)
T ss_dssp             -THHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHH
T ss_pred             cccchHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             --HHHHHHcC--CCcchhhhhcCChhhHHH
Q 048759          368 --YQRLQSKG--IRCSMNWFLNCSDQRFEE  393 (442)
Q Consensus       368 --~~~L~~~G--~~~~l~~~l~~sd~~F~~  393 (442)
                        +++|+++|  ..+++.+++.+||++|++
T Consensus       316 ~~~~~l~~~g~~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  316 EVLKVLKSKGLIINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             HHHHTT--TTTGGGGGS-HHHHHHHHHHT-
T ss_pred             HHHHHHHHCcCCCCCCHHHHhhccHHHhcC
Confidence              56788999  678999999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.3e-51  Score=425.39  Aligned_cols=339  Identities=24%  Similarity=0.461  Sum_probs=313.4

Q ss_pred             hhHHHHHHHHhCCCCCccccCCCC--CccH-HHHHHHHHHHHHCCCCccccc----cCCccccccccccchHHHHHHHHc
Q 048759           18 NRVKICDYLKSLGIIPDELENLEL--PSTI-EVMEERVMFLQKLGLTIDDIN----EYPLMLGCSMRKNMIPVFSYLEKI   90 (442)
Q Consensus        18 ~~~~~~~~L~~~Gi~~~~i~~~~~--~~~~-~~~~~~l~~L~~lG~s~~~i~----~~P~ll~~~~~~~l~~~l~~L~~l   90 (442)
                      .....++||+++|++.++|++++.  .+++ ..+.++++||+++|++.+++.    ++|.+|.++++.++.|+++||+++
T Consensus        91 ~~~~~l~~L~s~G~~~~~i~~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~l  170 (487)
T PLN03196         91 VMRERVEFLHKLGLTIEDINEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGL  170 (487)
T ss_pred             HHHHHHHHHHHcCCChHHhccCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHc
Confidence            345689999999999999998863  3454 589999999999999999986    899999999999999999999999


Q ss_pred             CCChhhHHHHHHhCCccccccccccHHHHHHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHHHHHHHhCCCccccc
Q 048759           91 GIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIG  170 (442)
Q Consensus        91 G~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~~lG~~~~~i~  170 (442)
                      |++.+++.+++.++|++|++++++++.|+++||+++|++++++++++.++|.+|+++++++++|+++||+++|++.++|+
T Consensus       171 Gvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~  250 (487)
T PLN03196        171 DVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVA  250 (487)
T ss_pred             CCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCceeecccccchHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHH-hhcCChHHHHHHHHhCC
Q 048759          171 PMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLI-SFGIRREKLASVIAQYP  249 (442)
Q Consensus       171 ~li~~~P~lL~~s~~~~l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~-~~G~~~~~i~~~i~~~P  249 (442)
                      +++.++|++|+++++++++|++++|+++|++++.+..++.++|.++++++++++.+++.+|. ++|++++++.+++.++|
T Consensus       251 ~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P  330 (487)
T PLN03196        251 RILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLP  330 (487)
T ss_pred             HHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999989999999996 69999999999999999


Q ss_pred             cccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChhHHHHHHhhcCcccccCh
Q 048759          250 QIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSGDLAKMVVQCPQLIACRV  328 (442)
Q Consensus       250 ~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~~i~~~v~~~P~iL~~S~  328 (442)
                      .+++++.+ +++++++|| .++||+.+++..|++++|.++++|.+++++|++||. +||++.++|    .++|++|+||+
T Consensus       331 ~il~lSe~-kl~~kvefL-~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~I----v~fP~~LsySL  404 (487)
T PLN03196        331 QIVSLNRN-VALKHVEFL-RGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKEL----VEFPAYFTYGL  404 (487)
T ss_pred             hhhcccHH-HHHHHHHHH-HHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHH----HhChHHhccCh
Confidence            99999865 799999999 579999999999999999999999999999999999 699999998    59999999999


Q ss_pred             h-hhHhHHHHHHHHhCCChhhHhhcCcccccccccccHHHH
Q 048759          329 E-LMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRY  368 (442)
Q Consensus       329 e-~l~~r~~fL~~~mg~~~~~v~~~P~~L~~Slekri~pR~  368 (442)
                      | +|+||+++|. +.|+..    ....+|.+| |+++.-|+
T Consensus       405 EkRI~PR~~~L~-~kGl~~----sL~~~L~~s-d~~F~~r~  439 (487)
T PLN03196        405 ESRIKPRYERVA-KKGIKC----SLAWFLNCS-DDKFEQRM  439 (487)
T ss_pred             hhhhHHHHHHHH-HcCCCC----CHHHHhccC-HHHHHHHH
Confidence            9 9999999987 577632    222456665 55666665

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=6.7e-41  Score=335.65  Aligned_cols=305  Identities=30%  Similarity=0.546  Sum_probs=232.9

Q ss_pred             HHHHhCCCCCccccCCC-------CCccHHHHHHHHHHHHHCCCCccccc----cCCccccccccccchHHHHHHHHcCC
Q 048759           24 DYLKSLGIIPDELENLE-------LPSTIEVMEERVMFLQKLGLTIDDIN----EYPLMLGCSMRKNMIPVFSYLEKIGI   92 (442)
Q Consensus        24 ~~L~~~Gi~~~~i~~~~-------~~~~~~~~~~~l~~L~~lG~s~~~i~----~~P~ll~~~~~~~l~~~l~~L~~lG~   92 (442)
                      +.|++.|.+...|.+..       +..+-..+.++++||.++|++..++.    ++|.++..+..+++.|.++||+++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            57888898888877652       12455689999999999999999985    89999999988899999999999999


Q ss_pred             ChhhHHHHHHhCCccccccccccHHHHHHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHHHHHHHhCCCccccccc
Q 048759           93 AKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPM  172 (442)
Q Consensus        93 s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~~lG~~~~~i~~l  172 (442)
                      +++++.+++.++|+++..+.+.++.+++.||+++|++.+.+.+++..+|.++...  +.+.+.++++.++|++++++.++
T Consensus        82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~v  159 (345)
T PF02536_consen   82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRV  159 (345)
T ss_dssp             -HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCC
T ss_pred             CHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhccc
Confidence            9999999999999999998877999999999999999988888898888877665  67999999999999999999999


Q ss_pred             cccCCceeecccccchHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCChHHHHHHHHhCCccc
Q 048759          173 VTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQII  252 (442)
Q Consensus       173 i~~~P~lL~~s~~~~l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~iL  252 (442)
                      +..+|+++.++.+++++|+++||+++|++.+++.+++.++|+++..++++.+++...++...|...+   .++.++|.++
T Consensus       160 i~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~---~~i~~~p~il  236 (345)
T PF02536_consen  160 IAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE---RVIKKFPQIL  236 (345)
T ss_dssp             HHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC------------------------------
T ss_pred             ccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccc---cccccccccc
Confidence            9999998888888899999999999999999999999999999999998556655545444444444   8899999999


Q ss_pred             ccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChhHHHHHHhhcCcccccChh-h
Q 048759          253 GLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSGDLAKMVVQCPQLIACRVE-L  330 (442)
Q Consensus       253 ~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~~i~~~v~~~P~iL~~S~e-~  330 (442)
                      .++ .+++.+++++| .++||+.+++.+|+.++|+++++|.+++++|++||. +||++.++|    .++|++|+||+| +
T Consensus       237 ~~~-~~~l~~~i~~L-~~lG~s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i----~~~P~~l~~sLe~r  310 (345)
T PF02536_consen  237 SLS-EEKLKPKIEFL-QSLGFSEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEI----VEFPQYLSYSLEKR  310 (345)
T ss_dssp             THH-HHHHHHHHHHH-HTTT--HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHH----HHSCHHHCS-HHHH
T ss_pred             ccc-hHhHHHHHHHH-HHhcCcHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHH----hhCCceeEechhhh
Confidence            988 45799999999 679999999999999999999999999999999999 699999998    599999999999 8


Q ss_pred             hHhHHHHHH
Q 048759          331 MKNSFYFFK  339 (442)
Q Consensus       331 l~~r~~fL~  339 (442)
                      |+||++++.
T Consensus       311 i~PR~~~~~  319 (345)
T PF02536_consen  311 IKPRYEVLK  319 (345)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhHHHHHH
Confidence            999955553

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.96  E-value=3.9e-29  Score=255.78  Aligned_cols=314  Identities=26%  Similarity=0.478  Sum_probs=275.9

Q ss_pred             HHHHHHHHHHHCCCCccccc----cCCccccccccccchHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHH
Q 048759           47 VMEERVMFLQKLGLTIDDIN----EYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKF  122 (442)
Q Consensus        47 ~~~~~l~~L~~lG~s~~~i~----~~P~ll~~~~~~~l~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~f  122 (442)
                      +...++++|.++|++..+++    .+|.++..+.++.+.+.+.+|...|++...+.++++..|.++..+...++.+.++|
T Consensus        90 ~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~  169 (413)
T KOG1267|consen   90 NPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEF  169 (413)
T ss_pred             CcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHHH
Confidence            33567889999999999986    67999999999889999989999999999999999999999988877899999999


Q ss_pred             HHhCC--CCCChHHHHHhhcCcccccccchhHHHHHHHHHHhCCCccccccccccCCceeecccccchHHHHHHHHhcCC
Q 048759          123 LRGLD--VEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGL  200 (442)
Q Consensus       123 L~~lG--~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~~lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L~~lG~  200 (442)
                      |++++  .....+.+.+...|.....  +..+. ++++++++|...+++..++..+|.......  .+...+.++.++|+
T Consensus       170 l~~~~~~~~~s~~~~~~~~~~~~~~~--~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i~~~g~  244 (413)
T KOG1267|consen  170 LKSIPPELLSSVVERLLTPVPSFLLN--ENSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFLLTLGF  244 (413)
T ss_pred             hhccchhhhhhHHHHhcccccccccc--ccccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhHHHhcc
Confidence            99974  7777788777777644332  22344 889999999999999999999999987654  57778899999998


Q ss_pred             ChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHH
Q 048759          201 PIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQ  280 (442)
Q Consensus       201 ~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~  280 (442)
                      .+..  +++...|.+++++.++++++++++|+++|++.+++..|+.++|++|+.+.+.++.. .+++.+.   .+ +   
T Consensus       245 ~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~-~~~~~~~---~~-~---  314 (413)
T KOG1267|consen  245 DPKT--REFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKT-TEYLLKN---PK-H---  314 (413)
T ss_pred             CCch--hHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHH-HHHHHhc---ch-h---
Confidence            8865  77888999999999999999999999999999999999999999999998865554 4445344   22 2   


Q ss_pred             HHHhcccccchhhhhHHHHHHHHHhcCCChhHHHHHHhhcCcccccChh-hhHhHHHHHHHHhCCChhhHhhcCcccccc
Q 048759          281 VVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVE-LMKNSFYFFKSEMGRPIKELIEFPEYFTYS  359 (442)
Q Consensus       281 ~i~~~P~il~~s~~~l~~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e-~l~~r~~fL~~~mg~~~~~v~~~P~~L~~S  359 (442)
                       +.++|+++..++.++.++++|+...|++..++..|+.++|+++.+|++ .++++.+|+.+.|+++.+.++.+|+++.|+
T Consensus       315 -~~k~p~~l~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~  393 (413)
T KOG1267|consen  315 -ILKFPQLLRSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYS  393 (413)
T ss_pred             -hhhhhhhhhccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhccc
Confidence             789999999999999999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             cccccHHHHHHHHHcCC
Q 048759          360 LESRIKPRYQRLQSKGI  376 (442)
Q Consensus       360 lekri~pR~~~L~~~G~  376 (442)
                      +++|+.||+.....+|.
T Consensus       394 le~ri~pr~~~~~~~~~  410 (413)
T KOG1267|consen  394 LEKRIRPRFNVIKKLGV  410 (413)
T ss_pred             hhhcchhHHHHHHHHhc
Confidence            99999999998777664

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.89  E-value=8e-23  Score=209.32  Aligned_cols=279  Identities=22%  Similarity=0.365  Sum_probs=244.0

Q ss_pred             ccchHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHHH
Q 048759           78 KNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVA  157 (442)
Q Consensus        78 ~~l~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~  157 (442)
                      .+...++++|+++|++..++..++..+|.++..+.++.+.|+..+|...|++...+.+++...|.+|+.+...++.+.++
T Consensus        89 ~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~  168 (413)
T KOG1267|consen   89 VNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIE  168 (413)
T ss_pred             cCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999888788999999


Q ss_pred             HHHHhC--CCccccccccccCCceeecccccchHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhc
Q 048759          158 YLVSIG--VSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFG  235 (442)
Q Consensus       158 ~L~~lG--~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G  235 (442)
                      |+++++  .....+.+++...|.....  +..++ ++++++++|..+..+...+..+|+.+....  .+...+.++..+|
T Consensus       169 ~l~~~~~~~~~s~~~~~~~~~~~~~~~--~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i~~~g  243 (413)
T KOG1267|consen  169 FLKSIPPELLSSVVERLLTPVPSFLLN--ENSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFLLTLG  243 (413)
T ss_pred             HhhccchhhhhhHHHHhcccccccccc--ccccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhHHHhc
Confidence            999984  7777777777777644322  23455 899999999999999999999999887653  6778889999999


Q ss_pred             CChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHHhcCCChhHHHH
Q 048759          236 IRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAK  315 (442)
Q Consensus       236 ~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~~~G~s~~~i~~  315 (442)
                      +++.+  +++..+|.++..+.+++++++++++ ..+||+.+++..|+.++|.++++|.+++..++.|+.+.   .++   
T Consensus       244 ~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l-~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~---~~~---  314 (413)
T KOG1267|consen  244 FDPKT--REFVKAPILLSYSSEKTLEPKVEVL-KSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN---PKH---  314 (413)
T ss_pred             cCCch--hHHHhhhhhhcccccccHHHHHHHH-HHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc---chh---
Confidence            88887  7888999999999999999999999 67799999999999999999999999999999999965   344   


Q ss_pred             HHhhcCcccccChhhhHhHHHHHHHHhCCChhhHh----hcCcccccccccccHHHH-HHHHH
Q 048759          316 MVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELI----EFPEYFTYSLESRIKPRY-QRLQS  373 (442)
Q Consensus       316 ~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~~~v~----~~P~~L~~Slekri~pR~-~~L~~  373 (442)
                       +.++|+++.++..++.++++|+. ..|++..+++    .+|++++||+++ +.++. +++..
T Consensus       315 -~~k~p~~l~~s~~~l~~~ie~l~-~~g~~~~q~~~~~~~~Pq~l~~s~~~-~~~~~~~~~~~  374 (413)
T KOG1267|consen  315 -ILKFPQLLRSSEDKLKPRIEFLL-SLGFSDVQILEMVKRFPQYLSFSLEK-ILKRKYEYLLK  374 (413)
T ss_pred             -hhhhhhhhhccchhhhhhHHHHH-HcCCcHHHHHHHHhhccHHhhhhHHh-hhhhhHHHHHH
Confidence             57999999999999999999999 6888876653    479999999998 55555 55544

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.18  E-value=0.0003  Score=43.63  Aligned_cols=30  Identities=27%  Similarity=0.494  Sum_probs=23.4

Q ss_pred             HHHhhcCcccccChhhhHhHHHHHHHHhCCC
Q 048759          315 KMVVQCPQLIACRVELMKNSFYFFKSEMGRP  345 (442)
Q Consensus       315 ~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~  345 (442)
                      .++.++|.+|++|.++|+++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            3567888888888668888888888 77764

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.79  E-value=0.00077  Score=41.72  Aligned_cols=25  Identities=32%  Similarity=0.812  Sum_probs=9.6

Q ss_pred             hhcCcccccccchhHHHHHHHHHHhC
Q 048759          138 MKYPELLGFKLEGTMSTSVAYLVSIG  163 (442)
Q Consensus       138 ~~~P~lL~~s~e~~l~~~v~~L~~lG  163 (442)
                      .++|.+|+++ +++++++++||+++|
T Consensus         5 ~~~P~il~~~-~~~l~~~~~~l~~~g   29 (31)
T smart00733        5 KKFPQILGYS-EKKLKPKVEFLKELG   29 (31)
T ss_pred             hhCcCccccc-HHHhhHHHHHHHHcC
Confidence            3334444333 233333333333333

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=94.76  E-value=0.26  Score=49.06  Aligned_cols=49  Identities=12%  Similarity=0.335  Sum_probs=34.7

Q ss_pred             HHHHhcccccchhhhh--HHHHHHHHH-hcCCChhHHHHHHhhcCcccccChh
Q 048759          280 QVVEKMPQVVSLNQHV--IMKSVEFLL-GRGIPSGDLAKMVVQCPQLIACRVE  329 (442)
Q Consensus       280 ~~i~~~P~il~~s~~~--l~~k~~fl~-~~G~s~~~i~~~v~~~P~iL~~S~e  329 (442)
                      +++.-...+|++..++  ...++..|+ ++|++ +.+..++.+||.|+-.|..
T Consensus       242 RaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp-~k~~~~l~rHPgIFYvS~k  293 (335)
T PF11955_consen  242 RAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLP-QKFRRLLLRHPGIFYVSLK  293 (335)
T ss_pred             HHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCc-HHHHHHHHhCCCeEEEecc
Confidence            3555566777777443  345677777 58887 6777888888888888776

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=82.93  E-value=8.3  Score=34.60  Aligned_cols=41  Identities=17%  Similarity=0.256  Sum_probs=24.3

Q ss_pred             HhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHHhcCCChhHHHH
Q 048759          269 LKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAK  315 (442)
Q Consensus       269 ~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~~~G~s~~~i~~  315 (442)
                      ...|+++++...+-..+-      ...=..-.+||.++|++.+++..
T Consensus       126 ~~~g~~~~~m~~wh~~fe------~~~p~~h~~~l~~~g~~~~~~~~  166 (172)
T cd04790         126 KAAGMDEADMRRWHIEFE------KMEPEAHQEFLQSLGIPEDEIER  166 (172)
T ss_pred             HHcCCChHHHHHHHHHHH------HhCcHHHHHHHHHcCCCHHHHHH
Confidence            566777766544322210      00112457899999999999853

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=82.56  E-value=2.5  Score=38.02  Aligned_cols=48  Identities=19%  Similarity=0.214  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCChHHHHH
Q 048759          189 KPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLAS  243 (442)
Q Consensus       189 ~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~~~~i~~  243 (442)
                      ...++.++.+|+++.++.+.=.   .+=...++    .-.+||..+|++.+++..
T Consensus       119 ~~w~~l~~~~g~~~~~m~~wh~---~fe~~~p~----~h~~~l~~~g~~~~~~~~  166 (172)
T cd04790         119 EKWVAILKAAGMDEADMRRWHI---EFEKMEPE----AHQEFLQSLGIPEDEIER  166 (172)
T ss_pred             HHHHHHHHHcCCChHHHHHHHH---HHHHhCcH----HHHHHHHHcCCCHHHHHH
Confidence            3455666778888776533211   11122333    456788888888877654

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	442
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	4e-57
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-22
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-53

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  188 bits (479), Expect = 4e-57
 Identities = 49/260 (18%), Positives = 114/260 (43%), Gaps = 13/260 (5%)

Query: 152 MSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEK 211
            S ++  LV +GV    I          L +     IK ++ +L  +G+    L   L K
Sbjct: 5   HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTK 64

Query: 212 RVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKL 271
              I   DLE  +K  V  L S    +  +A ++ + P ++   ++ ++ ++L FF  +L
Sbjct: 65  NHAIFSEDLE-NLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKEL 122

Query: 272 KIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGR-GIPSGDLAKMVVQCPQLIACRVEL 330
           ++   +   +V ++P++++ +   + ++++      G    ++  M+ + P+++      
Sbjct: 123 ELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMK 182

Query: 331 MKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKGIR---------CSMN 381
           +  +F F  + M  P   +++FP+ F   L  ++K R+  L   G            S++
Sbjct: 183 LTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLD 241

Query: 382 WFLNCSDQRFEERLLGNYIE 401
             ++  D+ F E +    ++
Sbjct: 242 KLVSIPDEIFCEEIAKASVQ 261

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 95.3 bits (237), Expect = 2e-22
 Identities = 41/222 (18%), Positives = 90/222 (40%), Gaps = 19/222 (8%)

Query: 17  VNRVKICDYLKSLGIIPDELENLE------LPSTIE-VMEERVMFLQKLGLTIDDINE-- 67
           V+  +    L  LG+   ++E         L    E  +++ ++FL+ +G+  + +    
Sbjct: 3   VDHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFL 62

Query: 68  --YPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRG 125
                +    + +N+    +YL     +K+ + + V+K P +L+ SV      +  F + 
Sbjct: 63  TKNHAIFSEDL-ENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKE 121

Query: 126 LDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVG 185
           L++  +    ++++ P LL   LE        Y + +G    +I  M+T+ P  L     
Sbjct: 122 LELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKM 181

Query: 186 TMIKPLVDYLVS-LGLPIKILARMLEKRVYILGYDLEETVKP 226
             +    D++ + + +P  I+     K   +    L   VK 
Sbjct: 182 K-LTETFDFVHNVMSIPHHIIV----KFPQVFNTRL-FKVKE 217

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  180 bits (459), Expect = 3e-53
 Identities = 63/328 (19%), Positives = 124/328 (37%), Gaps = 23/328 (7%)

Query: 82  PVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYP 141
            +   L  +G+         K+ P V H  +      +  FL      KE I  ++ +YP
Sbjct: 21  DLLKNLLTMGVDIDMA---RKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYP 76

Query: 142 ELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYP-YFLGMRVGTMIKPLVDYLVSLGL 200
             +    E  +S        I  S  +I  ++ + P  F        ++  + +L S+GL
Sbjct: 77  RAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGL 135

Query: 201 PIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIR------REKLASVIAQYPQIIGL 254
             K L R+L          L+   K  V+ L + G+        + +  +I + P I+  
Sbjct: 136 TRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQ 194

Query: 255 PLKAKMSSQLYFFNLKLKIDPDEFAQVVEKM-PQVVSLNQHVIMKSV----EFLLGRGIP 309
             K ++ + + F      ++ +E   ++     +++ L+     +S     E L   G  
Sbjct: 195 STK-RVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCT 253

Query: 310 SGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQ 369
             ++ K V+  P +I    +   +       E    I ++IE P     S+   +K R +
Sbjct: 254 EEEVQKFVLSYPDVIFLAEKKFNDKIDCLM-EENISISQIIENPRVLDSSIS-TLKSRIK 311

Query: 370 RLQSKG--IRCSMNWFLNCSDQRFEERL 395
            L + G  +       L+ S +R+E +L
Sbjct: 312 ELVNAGCNLSTLNITLLSWSKKRYEAKL 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	442
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.95
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.29
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.62
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	92.85
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	90.3
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	89.08
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	85.01
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	84.45
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	84.38
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	83.95
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	81.26

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=9.6e-52  Score=411.86  Aligned_cols=308  Identities=19%  Similarity=0.277  Sum_probs=229.2

Q ss_pred             hHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHHHHHH
Q 048759           81 IPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLV  160 (442)
Q Consensus        81 ~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~  160 (442)
                      ..+++||.++|++.++   ++..+|.++..+++ +..++++||+++|++.+++++++.++|.+|++++ +++.|+++||+
T Consensus        20 ~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~fL~   94 (343)
T 3mva_O           20 EDLLKNLLTMGVDIDM---ARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDLWR   94 (343)
T ss_dssp             CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHH---HHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHHHH
Confidence            4566666666666443   34456666655543 5566666666666666666666666666666664 35666666666


Q ss_pred             HhCCCccccccccccCCce-eecccccchHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCC--
Q 048759          161 SIGVSPRDIGPMVTQYPYF-LGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIR--  237 (442)
Q Consensus       161 ~lG~~~~~i~~li~~~P~l-L~~s~~~~l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~--  237 (442)
                      ++|++++++.+++.++|++ ++.+.+++++|+++||+++|++.+++.+++.++|++|+.+++ ++++++++|+++|++  
T Consensus        95 ~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e-~~~~~v~~L~~lgv~~g  173 (343)
T 3mva_O           95 KIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLSLG  173 (343)
T ss_dssp             TTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHHHHHHTT
T ss_pred             HcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHH-HhhHHHHHHHHhCCCcC
Confidence            6666666666666666663 333322366677777777777777777777777777777666 446677777665553  


Q ss_pred             ----hHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhc-ccccchhhhhHHHHHHHHH----hcCC
Q 048759          238 ----REKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKM-PQVVSLNQHVIMKSVEFLL----GRGI  308 (442)
Q Consensus       238 ----~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~-P~il~~s~~~l~~k~~fl~----~~G~  308 (442)
                          .+.+.+++.++|.+++.+ +++++++++|+..++|++++++..++.+. |.++..+.+.++++++|+.    ++||
T Consensus       174 ~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~  252 (343)
T 3mva_O          174 HNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC  252 (343)
T ss_dssp             CSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTC
T ss_pred             CCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCC
Confidence                455667777777777766 55677777777556777777777777764 4777888888888887776    6999


Q ss_pred             ChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhCCChhhHhhcCcccccccccccHHHHHHHHHcCCCcchh--hhhcC
Q 048759          309 PSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKGIRCSMN--WFLNC  386 (442)
Q Consensus       309 s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~~~v~~~P~~L~~Slekri~pR~~~L~~~G~~~~l~--~~l~~  386 (442)
                      +.+++..|+.++|++|++|.++|++|++||++ ||+++++|+++|++|+||+| ||+|||++|+++|+.+++.  +++++
T Consensus       253 s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~  330 (343)
T 3mva_O          253 TEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNITLLSW  330 (343)
T ss_dssp             CHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGGGGGS
T ss_pred             CHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcchhhcC
Confidence            99999999999999999999999999999998 99999999999999999999 9999999999999998877  99999


Q ss_pred             ChhhHHHHHhh
Q 048759          387 SDQRFEERLLG  397 (442)
Q Consensus       387 sd~~F~~~~~~  397 (442)
                      ||++|+++|++
T Consensus       331 s~~~F~~~~~~  341 (343)
T 3mva_O          331 SKKRYEAKLKK  341 (343)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=1.2e-45  Score=367.78  Aligned_cols=313  Identities=18%  Similarity=0.292  Sum_probs=275.2

Q ss_pred             HHHHHHHHHHHHHCCCCccccc-cCCccccccccccchHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHH
Q 048759           45 IEVMEERVMFLQKLGLTIDDIN-EYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFL  123 (442)
Q Consensus        45 ~~~~~~~l~~L~~lG~s~~~i~-~~P~ll~~~~~~~l~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL  123 (442)
                      +..-.++++||.++|++.+++. ++|.++..+++ ++.++++||+++|++.+++++++.++|.+|.+++ +++.|+++||
T Consensus        16 ~~~~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~fL   93 (343)
T 3mva_O           16 PLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDLW   93 (343)
T ss_dssp             ----CCHHHHHHHHTCCHHHHHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHHH
T ss_pred             ccccHHHHHHHHHcCCCHHHHHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHHH
Confidence            3445678999999999999985 78999888775 7899999999999999999999999999999995 5899999999


Q ss_pred             HhCCCCCChHHHHHhhcCc-ccccccchhHHHHHHHHHHhCCCccccccccccCCceeecccccchHHHHHHHHhcCCC-
Q 048759          124 RGLDVEKEDIGYVLMKYPE-LLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLP-  201 (442)
Q Consensus       124 ~~lG~~~~~i~~il~~~P~-lL~~s~e~~l~~~v~~L~~lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L~~lG~~-  201 (442)
                      +++|++++++++++.++|+ +++.+.++++.|+++||+++|++.++|++++.++|++++++.+++ ++++++|+++|++ 
T Consensus        94 ~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~  172 (343)
T 3mva_O           94 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSL  172 (343)
T ss_dssp             TTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHT
T ss_pred             HHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCc
Confidence            9999999999999999999 455544358999999999999999999999999999999999855 9999999977664 


Q ss_pred             -----hHHHHHHHHhcchhcccCcccchhhhHHHHHh-hcCChHHHHHHHHhCC-cccccChhhhhhhHHHHHHH---hc
Q 048759          202 -----IKILARMLEKRVYILGYDLEETVKPNVDCLIS-FGIRREKLASVIAQYP-QIIGLPLKAKMSSQLYFFNL---KL  271 (442)
Q Consensus       202 -----~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~-~G~~~~~i~~~i~~~P-~iL~~~~~~~l~~~~~~l~~---~l  271 (442)
                           .+.|.+++.++|++++++ +++++++++||++ +|++++++..++.+.| .+++.+.+ .+++++.++.+   ++
T Consensus       173 g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~-~l~~~~~~l~e~~~~l  250 (343)
T 3mva_O          173 GHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSND-YARRSYANIKEKLFSL  250 (343)
T ss_dssp             TCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTT-HHHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHH-HHHHHHHHHHHHHHHc
Confidence                 678999999999999999 5699999999995 9999999999998865 77777754 78888877754   89


Q ss_pred             CCChhHHHHHHHhcccccchhhhhHHHHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhCCChhhHhh
Q 048759          272 KIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIE  351 (442)
Q Consensus       272 G~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~~~v~~  351 (442)
                      ||+++++..|+.++|.++.+|.+++++|++||.++|++.++|    .++|++|+||+|+|+||++||. ..|+....  .
T Consensus       251 G~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~mg~~~~~i----~~~P~~l~~sleri~~R~~~L~-~~g~~~~~--~  323 (343)
T 3mva_O          251 GCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQI----IENPRVLDSSISTLKSRIKELV-NAGCNLST--L  323 (343)
T ss_dssp             TCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHTTTCCHHHH----HHSGGGGGSCHHHHHHHHHHHH-TTTCCSSS--S
T ss_pred             CCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHHcCCCHHHH----HhCCHHHhcCHHHHHHHHHHHH-HCCCCCCC--C
Confidence            999999999999999999999999999999999999999998    5999999999999999999998 78886531  1


Q ss_pred             cCcccccccccccHHHHHH
Q 048759          352 FPEYFTYSLESRIKPRYQR  370 (442)
Q Consensus       352 ~P~~L~~Slekri~pR~~~  370 (442)
                      +-.+|++| |+++.-|+..
T Consensus       324 ~~~~l~~s-~~~F~~~~~~  341 (343)
T 3mva_O          324 NITLLSWS-KKRYEAKLKK  341 (343)
T ss_dssp             CGGGGGSC-HHHHHHHHHH
T ss_pred             cchhhcCC-HHHHHHHHhc
Confidence            22788887 6677777654

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=9.1e-44  Score=343.10  Aligned_cols=247  Identities=17%  Similarity=0.312  Sum_probs=195.9

Q ss_pred             HHHHHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHHHHHHHhCCCccccccccccCCceeecccccchHHHHHHHH
Q 048759          117 MPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLV  196 (442)
Q Consensus       117 ~~~v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~~lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L~  196 (442)
                      .++++||.++|++..++.+....+|.+|++++++++.|+++||+++|+++++|++++.++|.+|++++++ ++|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            4677777777777777766666666667777777777777777777777777777777777777777775 777777777


Q ss_pred             hcCCChHHHHHHHHhcchhcccCcccchhhhHHHHH-hhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCCh
Q 048759          197 SLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLI-SFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDP  275 (442)
Q Consensus       197 ~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~-~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~  275 (442)
                      ++|++++++.+++.++|++|+++++ ++++++++|+ ++|++.+++.                                 
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~---------------------------------  130 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTR---------------------------------  130 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHH---------------------------------
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHH---------------------------------
Confidence            7777777777777777777777776 5666666663 4555555554                                 


Q ss_pred             hHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhCCChhhHhhcCc
Q 048759          276 DEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPE  354 (442)
Q Consensus       276 ~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~~~v~~~P~  354 (442)
                          +++.++|.+++.|.++++++++++. ++||+.+++..|+.++|.+|++|.++|++|++||+++||+++++|+++|+
T Consensus       131 ----~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~  206 (270)
T 3m66_A          131 ----DLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQ  206 (270)
T ss_dssp             ----HHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGG
T ss_pred             ----HHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCch
Confidence                4555566666666666778899875 89999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccHHHHHHHHH---cCCC------cchhhhhcCChhhHHHHHhhcccc-cc
Q 048759          355 YFTYSLESRIKPRYQRLQS---KGIR------CSMNWFLNCSDQRFEERLLGNYIE-SE  403 (442)
Q Consensus       355 ~L~~Slekri~pR~~~L~~---~G~~------~~l~~~l~~sd~~F~~~~~~~~~e-~~  403 (442)
                      +|+||+| ||+|||.+|+.   +|+.      +++.+++.+||++|+++|++.+.| |+
T Consensus       207 ~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~  264 (270)
T 3m66_A          207 VFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFE  264 (270)
T ss_dssp             GGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHH
T ss_pred             HhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHH
Confidence            9999999 99999988765   5552      678899999999999999986665 54

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=8.1e-37  Score=300.11  Aligned_cols=208  Identities=20%  Similarity=0.330  Sum_probs=159.9

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCChHHHHHHHHhCCcccccChhhhhhhHHHHH
Q 048759          188 IKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFF  267 (442)
Q Consensus       188 l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l  267 (442)
                      +...+..|.++|+++.+|++++..+|+++..    ++.+.+.+|..+|++.+++.+||.++|.+|.++++ ++++++.||
T Consensus        46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL  120 (335)
T 4fp9_B           46 LERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYL  120 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHH
Confidence            4445555555555555555555555555432    34455555555566666666666666666655553 466666666


Q ss_pred             HHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhCCCh
Q 048759          268 NLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPI  346 (442)
Q Consensus       268 ~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~  346 (442)
                       +++|++.+++++++.++|++++++.+.+..++.+|. ++||+.++|..||.++|+||++|.++|++|++||+++||++.
T Consensus       121 -~~lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~  199 (335)
T 4fp9_B          121 -QKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKH  199 (335)
T ss_dssp             -HHTTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCH
T ss_pred             -HHcCCCHHHHHHHHHhCchhhccChHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCH
Confidence             446666666777777778888888888888999987 799999999999999999999999999999999999999999


Q ss_pred             hhHhhcCcccccccccccHHHHHHHHHcCCC-------------cchhhhhcCChhhHHHHHhh-cccccc
Q 048759          347 KELIEFPEYFTYSLESRIKPRYQRLQSKGIR-------------CSMNWFLNCSDQRFEERLLG-NYIESE  403 (442)
Q Consensus       347 ~~v~~~P~~L~~Slekri~pR~~~L~~~G~~-------------~~l~~~l~~sd~~F~~~~~~-~~~e~~  403 (442)
                      .+|++ |.+|+||++ ||+|||.||+..|..             ++|..++..||+.||.++++ +.++|+
T Consensus       200 ~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~  268 (335)
T 4fp9_B          200 PDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQ  268 (335)
T ss_dssp             HHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHH
T ss_pred             HHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHH
Confidence            99997 999999999 999999999999872             57999999999999999986 444464

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=2.7e-36  Score=290.86  Aligned_cols=243  Identities=20%  Similarity=0.339  Sum_probs=210.5

Q ss_pred             hHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHHHHHH
Q 048759           81 IPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLV  160 (442)
Q Consensus        81 ~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~  160 (442)
                      .++++||.++|++.+++.+....+|.++++++++++.|+++||+++|++++++++++.++|.+|++++++ ++|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            6899999999999999988777778889999999999999999999999999999999999999999987 999999999


Q ss_pred             HhCCCccccccccccCCceeecccccchHHHHHHH-HhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCChH
Q 048759          161 SIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYL-VSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRRE  239 (442)
Q Consensus       161 ~lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L-~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~~~  239 (442)
                      ++|++.++|++++.++|++|+++++ +++|+++|| .++|++.+++.+++.++|++++.+.+ ++++++           
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v-----------  151 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENM-----------  151 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHH-----------
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHH-----------
Confidence            9999999999999999999999998 699999999 58999999999999999999999986 444444           


Q ss_pred             HHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChhHHHHHHh
Q 048759          240 KLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSGDLAKMVV  318 (442)
Q Consensus       240 ~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~~i~~~v~  318 (442)
                                               +++..++||+.+++..++.++|.++++|.+++++|++||. +||++.++|    .
T Consensus       152 -------------------------~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i----~  202 (270)
T 3m66_A          152 -------------------------KVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHII----V  202 (270)
T ss_dssp             -------------------------HHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHH----H
T ss_pred             -------------------------HHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHH----H
Confidence                                     3444678888888888888899999999999999999997 699999998    5


Q ss_pred             hcCcccccChhhhHhHHHHHHHH--hCCChhhHhhcCc---ccccccccccHHHH
Q 048759          319 QCPQLIACRVELMKNSFYFFKSE--MGRPIKELIEFPE---YFTYSLESRIKPRY  368 (442)
Q Consensus       319 ~~P~iL~~S~e~l~~r~~fL~~~--mg~~~~~v~~~P~---~L~~Slekri~pR~  368 (442)
                      ++|++|+||+|+|+||++|+..-  .|+...+. .++.   ++..| |+++.-|+
T Consensus       203 ~~P~~l~~Sleri~pR~~~l~~L~~~g~~~~~~-~~~~L~~~l~~s-d~~F~~~~  255 (270)
T 3m66_A          203 KFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKP-NYISLDKLVSIP-DEIFCEEI  255 (270)
T ss_dssp             HCGGGGGSCHHHHHHHHHHHHHHTCCCCCTTSS-SCCCHHHHHHSC-HHHHHHHT
T ss_pred             hCchHhhCCHHHHHHHHHHHHHhhccCCCCCCC-CCCCHHHHhcCC-HHHHHHHH
Confidence            99999999999999999999742  34443331 1233   55555 55555554

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.95  E-value=2e-27  Score=233.42  Aligned_cols=182  Identities=14%  Similarity=0.271  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHhCCCccccccccccCCceeecccccchHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHH
Q 048759          152 MSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCL  231 (442)
Q Consensus       152 l~~~v~~L~~lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L  231 (442)
                      +...+..|.++|+++.+|++++..+|.++..    ++.+++.||..+|++.++|.++|+++|++|+++++ +|+++++||
T Consensus        46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL  120 (335)
T 4fp9_B           46 LERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYL  120 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHH
Confidence            5666677778888888888888888887633    46678888888888888888888888888888886 788888888


Q ss_pred             HhhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCCh
Q 048759          232 ISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPS  310 (442)
Q Consensus       232 ~~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~  310 (442)
                      +++|++.+++.+++.++|++|+++.+ ++..++.+|..++||+.+++..|+.++|.+|.+|.++|+.|++||. +||++.
T Consensus       121 ~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~  199 (335)
T 4fp9_B          121 QKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKH  199 (335)
T ss_dssp             HHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCH
T ss_pred             HHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCH
Confidence            88888888888888888888888876 5777888887899999999999999999999999999999999999 799999


Q ss_pred             hHHHHHHhhcCcccccChhhhHhHHHHHHHHhCCC
Q 048759          311 GDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRP  345 (442)
Q Consensus       311 ~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~  345 (442)
                      ++|+    + |.+|+||+++|++|+.||. .+|..
T Consensus       200 ~eIv----k-P~~l~ySLeRIkpRH~fL~-~lG~~  228 (335)
T 4fp9_B          200 PDIV----K-SEYLQYSLTKIKQRHIYLE-RLGRY  228 (335)
T ss_dssp             HHHH----H-TTGGGSCHHHHHHHHHHHH-HHTSC
T ss_pred             HHcc----c-cchhhccHHHHHHHHHHHH-HcCCc
Confidence            9985    4 9999999999999999998 68873

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.29  E-value=4.4e-11  Score=100.41  Aligned_cols=161  Identities=22%  Similarity=0.387  Sum_probs=124.2

Q ss_pred             hcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChhH
Q 048759          234 FGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSGD  312 (442)
Q Consensus       234 ~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~~  312 (442)
                      +|+.++-++-++.+.|+++-+.+- .++.+-.++ ..+|+.+..+.+++--+|.|+.+....+...+..+. ++=|+.++
T Consensus        43 lglnpepvcvvlkkspqllklpim-qmrkrssyl-qklglgegklkrvlyccpeiftmrqqdindtvrllkekclftvqq  120 (239)
T 4fzv_B           43 LGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYL-QKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQ  120 (239)
T ss_dssp             HCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHH-HHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHHHHHSCCCHHH
T ss_pred             hcCCCCceEEEecCCHHHhcChHH-HHHHHHHHH-HHhCCCccchhhheecCcHHHHHHHhhHhHHHHHHHHhHHhhHHH
Confidence            455555555555555555554432 233333444 456666666666666677777777777778888888 58899999


Q ss_pred             HHHHHhhcCcccccChhhhHhHHHHHHHHhCCChhhHhhcCcccccccccccHHHHHHHHHcCCC-------------cc
Q 048759          313 LAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKGIR-------------CS  379 (442)
Q Consensus       313 i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~~~v~~~P~~L~~Slekri~pR~~~L~~~G~~-------------~~  379 (442)
                      +..++..||.+|.-.+..+.-|+.|-.-.||+...++++. .||.||+. .|+.||-+|.+.|..             +-
T Consensus       121 vtkilhscpsvlredlgqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpl  198 (239)
T 4fzv_B          121 VTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPL  198 (239)
T ss_dssp             HHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCC
T ss_pred             HHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChH
Confidence            9999999999999999999999999888999999999975 89999998 799999999887742             44


Q ss_pred             hhhhhcCChhhHHHHHhhc
Q 048759          380 MNWFLNCSDQRFEERLLGN  398 (442)
Q Consensus       380 l~~~l~~sd~~F~~~~~~~  398 (442)
                      +..++..|+..|.++-+.+
T Consensus       199 lkdilrvseaeflartact  217 (239)
T 4fzv_B          199 LKDILRVSEAEFLARTACT  217 (239)
T ss_dssp             HHHHHTSCHHHHHHHTSCS
T ss_pred             HHHHHHHhHHHHHHHHhcc
Confidence            7889999999999998764

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.62  E-value=8.7e-07  Score=74.43  Aligned_cols=140  Identities=16%  Similarity=0.301  Sum_probs=95.1

Q ss_pred             hcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChh
Q 048759          197 SLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPD  276 (442)
Q Consensus       197 ~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~  276 (442)
                      -+|+.++-+.-++.+.|+++...+. .++.+-.||+.+|+....+.+++--||.+++....+ +...+..+.+..-|+-+
T Consensus        42 llglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqqd-indtvrllkekclftvq  119 (239)
T 4fzv_B           42 LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQ  119 (239)
T ss_dssp             HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHH-HHHHHHHHHHHSCCCHH
T ss_pred             hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhh-HhHHHHHHHHhHHhhHH
Confidence            3466665555566666666665554 555566666666666666666666666666655442 44555555556666666


Q ss_pred             HHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhCC
Q 048759          277 EFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGR  344 (442)
Q Consensus       277 ~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~  344 (442)
                      ++-++++.+|.++.-+...++-|+.|-- .||+...+|.     ....|.||+.+|+.|.-||. .+|.
T Consensus       120 qvtkilhscpsvlredlgqleykfqyayfrmgikhpdiv-----kseylqysltkikqrhiyle-rlgr  182 (239)
T 4fzv_B          120 QVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIV-----KSEYLQYSLTKIKQRHIYLE-RLGR  182 (239)
T ss_dssp             HHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHH-----HTTGGGSCHHHHHHHHHHHH-HHTC
T ss_pred             HHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchh-----HHHHHHHHHHHHHHHHhHHH-Hhcc
Confidence            6777777777777666667778887766 7999999983     45789999999999999997 6765

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=92.85  E-value=0.066  Score=55.80  Aligned_cols=145  Identities=10%  Similarity=0.114  Sum_probs=62.4

Q ss_pred             HcCCChhhHHHHHHhCCccccccccccHHHHHHHHH-hCCCCCChHHHHHhhcCcccccccchhHHHHHHHHH-HhCCCc
Q 048759           89 KIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLR-GLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLV-SIGVSP  166 (442)
Q Consensus        89 ~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~-~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~-~lG~~~  166 (442)
                      +.||+++++.+|-+..-.--.   -+.+...+--|. ..|++.++|.+|-...---...   +++......+. ..|++.
T Consensus       421 ~~glt~~qvv~IAsn~GGkQA---Le~V~~llp~L~~~~glt~aqvVaIAsn~GGkQAL---eaV~~llpvl~~~~gls~  494 (1047)
T 3ugm_A          421 AHGLTPDQVVAIASHDGGKQA---LETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQAL---ETVQQLLPVLCQAHGLTP  494 (1047)
T ss_dssp             TSSCCHHHHHHHHSSTTTHHH---HHHHHHHHHHHHTTSCCCHHHHHHHSSSTTHHHHH---HHHHHHHHHHHHHSCCCS
T ss_pred             hcCCCHHHhhhhhccCchHHH---HHHHHHHhHHhhcccCCCHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHhcCCCH
Confidence            456666666655443211100   012222222333 4677777776665443322211   11222223233 358888


Q ss_pred             cccccccccCCceeecccccchHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHh-hcCChHHHHHH
Q 048759          167 RDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLIS-FGIRREKLASV  244 (442)
Q Consensus       167 ~~i~~li~~~P~lL~~s~~~~l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~-~G~~~~~i~~~  244 (442)
                      ++|.+|..++-.-=....-..+.|.+.  +..|++++++.++-.....--  -++ .+..-.-.|+. .|++.+++..|
T Consensus       495 ~qvvaiA~n~GGkQALeaV~~l~p~l~--~~~gls~~qVVaIAsN~GGkQ--ALe-aV~~~lp~Lr~a~~ls~~qVVaI  568 (1047)
T 3ugm_A          495 DQVVAIASNIGGKQALATVQRLLPVLC--QAHGLTPDQVVAIASNGGGKQ--ALE-TVQRLLPVLCQAHGLTPDQVVAI  568 (1047)
T ss_dssp             HHHHHHHSSTTHHHHHHHHHHHSGGGT--TTTCCCSHHHHHHHSSTTCHH--HHH-HHHHHHHHHTTTSCCTHHHHHHH
T ss_pred             HHHHHHHhccchHHHHHHHHHhhhhhc--cccCCCHHHhhhhhcCCcHHH--HHH-HHHHHhHHHHHHhCCCHHHeeee
Confidence            887777654321000000001111111  256777777666544332100  112 33344444553 67777776554

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=90.30  E-value=1.5  Score=42.39  Aligned_cols=106  Identities=19%  Similarity=0.251  Sum_probs=53.8

Q ss_pred             HHhCCCCCccccCCCCCccHHHHHHHHHHHHHCCCCccccc---cCCccccccccccchHHHHHHHHcCCChhhHHHHHH
Q 048759           26 LKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDIN---EYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVK  102 (442)
Q Consensus        26 L~~~Gi~~~~i~~~~~~~~~~~~~~~l~~L~~lG~s~~~i~---~~P~ll~~~~~~~l~~~l~~L~~lG~s~~~i~~lv~  102 (442)
                      |..+|-+...+.++. +.+.+.+..-=+-|-..||++++|-   ++|.-|.. +..+....+.-|  .+++.++|..+-+
T Consensus         8 l~~lgys~~q~~k~k-~~~~s~va~~h~~l~~~g~t~~~i~~is~~~~al~~-va~~y~~l~aal--~~lt~~~iV~ia~   83 (463)
T 4hpz_A            8 LRTLGYSQQQQEKIK-PKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGT-VAVKYQDMIAAL--PEATHEAIVGVGK   83 (463)
T ss_dssp             GGGGTCCHHHHHHHC-GGGHHHHHHHHHHHHHTTCCHHHHHHHTTSTHHHHH-HHTTHHHHHHHS--TTCCHHHHHHHHT
T ss_pred             HHHhccCHHHHHHhh-HHHHHHHHHHHHHHHhcCCCHHHHHHhhccHhHHHH-HHHhhHHHHhhc--cccCHHHHHHHHh
Confidence            445677766666643 3344444455566778999999873   55553331 111222222222  4566666665554


Q ss_pred             hCCccccccccccHHHHHHHHHh--CCCCCChHHHHHh
Q 048759          103 KYPQVLHASVVVELMPVVKFLRG--LDVEKEDIGYVLM  138 (442)
Q Consensus       103 ~~P~lL~~~~~~~l~~~v~fL~~--lG~~~~~i~~il~  138 (442)
                      .+-.....   ..+.+...-|..  ++++.+++..|..
T Consensus        84 ~~~g~~Al---~a~~~~~~~L~~~p~~l~~~qiv~IA~  118 (463)
T 4hpz_A           84 QWSGACAL---EALLTVAGELRGPPLQLDTGQLLKIAK  118 (463)
T ss_dssp             STTTTHHH---HHHHHHHHHHHSTTTCCCHHHHHHHHH
T ss_pred             ccchHHHH---HHHHHHHHHhhcCccCCCHHHHHHHHh
Confidence            44332221   123444444443  4666666665554

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=89.08  E-value=3.7  Score=43.10  Aligned_cols=81  Identities=7%  Similarity=0.169  Sum_probs=38.6

Q ss_pred             hhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChh
Q 048759          233 SFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSG  311 (442)
Q Consensus       233 ~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~  311 (442)
                      +.||++.++..|-.+.-.-=.+   +.+......|....|++++++..|-...-.  ..--+....-...+. ..||+.+
T Consensus       421 ~~glt~~qvv~IAsn~GGkQAL---e~V~~llp~L~~~~glt~aqvVaIAsn~GG--kQALeaV~~llpvl~~~~gls~~  495 (1047)
T 3ugm_A          421 AHGLTPDQVVAIASHDGGKQAL---ETVQRLLPVLCQTHGLTPAQVVAIASHDGG--KQALETVQQLLPVLCQAHGLTPD  495 (1047)
T ss_dssp             TSSCCHHHHHHHHSSTTTHHHH---HHHHHHHHHHHTTSCCCHHHHHHHSSSTTH--HHHHHHHHHHHHHHHHHSCCCSH
T ss_pred             hcCCCHHHhhhhhccCchHHHH---HHHHHHhHHhhcccCCCHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHhcCCCHH
Confidence            3677777776654433322111   123333333444567777776654211100  001122222233344 3788888


Q ss_pred             HHHHHHh
Q 048759          312 DLAKMVV  318 (442)
Q Consensus       312 ~i~~~v~  318 (442)
                      +|..|..
T Consensus       496 qvvaiA~  502 (1047)
T 3ugm_A          496 QVVAIAS  502 (1047)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHh
Confidence            8887774

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=85.01  E-value=9.4  Score=30.83  Aligned_cols=36  Identities=17%  Similarity=0.329  Sum_probs=25.2

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHH
Q 048759          189 KPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLI  232 (442)
Q Consensus       189 ~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~  232 (442)
                      +..+..|.++|++...+.+.+..+.    -    ..+..++||-
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~~g----~----~~e~amewL~   44 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKAAG----A----NIEQILDYLF   44 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHC----S----CHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHC----c----CHHHHHHHHH
Confidence            3467778889999988888887663    1    3446666764

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=84.45  E-value=0.34  Score=47.62  Aligned_cols=37  Identities=8%  Similarity=0.142  Sum_probs=27.0

Q ss_pred             chHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHHH
Q 048759           80 MIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLR  124 (442)
Q Consensus        80 l~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~  124 (442)
                      ....++.|.++||++.++.+.+...-        +++..-++||-
T Consensus       168 ~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~  204 (368)
T 1oqy_A          168 YETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLL  204 (368)
T ss_dssp             HHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTT
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHH
Confidence            45678999999999999988887531        34556667774

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=84.38  E-value=4.6  Score=39.11  Aligned_cols=108  Identities=15%  Similarity=0.198  Sum_probs=64.5

Q ss_pred             HHHCCCCcccccc-CCccccccccccchHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHHHhCCCCCChH
Q 048759           55 LQKLGLTIDDINE-YPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDI  133 (442)
Q Consensus        55 L~~lG~s~~~i~~-~P~ll~~~~~~~l~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i  133 (442)
                      |..+|+|.+++.+ .|..+.     ++..--+-|...||+..+|.. ++++|.-|.. +..+....+.-|  -+++.++|
T Consensus         8 l~~lgys~~q~~k~k~~~~s-----~va~~h~~l~~~g~t~~~i~~-is~~~~al~~-va~~y~~l~aal--~~lt~~~i   78 (463)
T 4hpz_A            8 LRTLGYSQQQQEKIKPKVRS-----TVAQHHEALVGHGFTHAHIVA-LSQHPAALGT-VAVKYQDMIAAL--PEATHEAI   78 (463)
T ss_dssp             GGGGTCCHHHHHHHCGGGHH-----HHHHHHHHHHHTTCCHHHHHH-HTTSTHHHHH-HHTTHHHHHHHS--TTCCHHHH
T ss_pred             HHHhccCHHHHHHhhHHHHH-----HHHHHHHHHHhcCCCHHHHHH-hhccHhHHHH-HHHhhHHHHhhc--cccCHHHH
Confidence            4578999999863 343332     334455667789999999986 4566664421 112233333333  57788888


Q ss_pred             HHHHhhcCcccccccchhHHHHHHHHHH--hCCCccccccccc
Q 048759          134 GYVLMKYPELLGFKLEGTMSTSVAYLVS--IGVSPRDIGPMVT  174 (442)
Q Consensus       134 ~~il~~~P~lL~~s~e~~l~~~v~~L~~--lG~~~~~i~~li~  174 (442)
                      ..+-..+-......   .+.+...-|..  ++++..+|.+|-.
T Consensus        79 V~ia~~~~g~~Al~---a~~~~~~~L~~~p~~l~~~qiv~IA~  118 (463)
T 4hpz_A           79 VGVGKQWSGACALE---ALLTVAGELRGPPLQLDTGQLLKIAK  118 (463)
T ss_dssp             HHHHTSTTTTHHHH---HHHHHHHHHHSTTTCCCHHHHHHHHH
T ss_pred             HHHHhccchHHHHH---HHHHHHHHhhcCccCCCHHHHHHHHh
Confidence            88877766555432   24444444443  3777777766654

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=83.95  E-value=13  Score=30.09  Aligned_cols=88  Identities=10%  Similarity=0.118  Sum_probs=55.6

Q ss_pred             hhHHHHHhhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHH-----HhcCCChhHHHHHHHhcccccchhhhhHHHHH
Q 048759          226 PNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFN-----LKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSV  300 (442)
Q Consensus       226 ~~v~~L~~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~-----~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~  300 (442)
                      ..+..|.++||+...+.+.+...-.        ..+.-++|+.     .+.|++...+-..+..+..--.- ...-...+
T Consensus        10 ~~v~~l~~MGFp~~~~~kAl~~~g~--------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~-~~~~~~~v   80 (118)
T 4ae4_A           10 QCVETVVNMGYSYECVLRAMKAAGA--------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK-MMEFLQLM   80 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH-HHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHCc--------CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc-cccCHHHH
Confidence            5677788899999998887765322        2344445543     24577776665555432210000 11123568


Q ss_pred             HHHHhcCCChhHHHHHHhhcCc
Q 048759          301 EFLLGRGIPSGDLAKMVVQCPQ  322 (442)
Q Consensus       301 ~fl~~~G~s~~~i~~~v~~~P~  322 (442)
                      .-|.+|||+.+.+..+++.+-+
T Consensus        81 ~~L~eMGF~~~~a~~AL~~~~n  102 (118)
T 4ae4_A           81 SKFKEMGFELKDIKEVLLLHNN  102 (118)
T ss_dssp             HHHHHTTCCHHHHHHHHHHTTT
T ss_pred             HHHHHcCCCHHHHHHHHHHcCC
Confidence            8889999999999988887654

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=81.26  E-value=1.6  Score=30.08  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=23.3

Q ss_pred             HHhCCccccccccccHHHHHHHHHhCCCCCChHHHHHhh
Q 048759          101 VKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMK  139 (442)
Q Consensus       101 v~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~  139 (442)
                      +..+|.+-..+    +..+++||++-|++.++|...+.+
T Consensus        19 FL~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           19 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HhCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence            44566665443    456778888888887777766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00