Citrus Sinensis ID: 048772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
MVDAVVSVVLDQLISSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQKQVKEKGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNFWE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHcccccccccccEEEccHHHHHHHHHHHccEEEEcccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccEEEcccccccccccccccccccccccEEEEcccccccccccHHHHHcccccEEccccccccccccHHHHcccccccEEcccccccccccccccccccccccccEEEcccccccccccccHHHHccccccccEEEEccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHccccccccccccccccEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccEEEEcccccccccccEEEEEEEEccccccccHHHcccccHHHHHHHccccccccHHHHHHHHcccEEEEEEcccccEcccHHHccccHHccHHHHEEEccccccccccHHHHHHHHHHHEEHcccHHHHHccHHHHccHcccEEEcccccccccccccccccccccEccEEEEcccccccccccccHHHHHHHHHcccEEEEccccccccHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHccccccccEEEEEcccccccccccccccccHHHHHcc
Coil and Loop (DISEMBL)
MVDAVVSVVLDQLISSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQKQVKEKGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENvweignskIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLeymprgierltglrtlsefvvgrtggehaskVCKLEALKGMNHLRGLLKIRmlgdlanvdeakhvdlkekknlDRLELwfdnvgmpdeneenDEAITKIAKSVRVCLlwdnchplkysrygIWIVWKEWVMNFWE
Flexible Loop (DISEMBL)
MVDAVVSVVLDQLISSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQKQVKEKGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELinletleinrctrLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVdeakhvdlkekknldrleLWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNchplkysrygIWIVWKEWVMNFWE
Low Complexity Region (SEG)
MVDAVVSVVLDQLISSafeeavervrrvtavkaevDKLTSNLLAIKAVLSDAEQKQVKEKGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNFWE
Disordered region (IsUnstruct)
***AVVSVVLDQLISSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQKQVKEKGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGM*********AITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNFW*
Disordered Region (DISOPRED)
MVDAVVSVVLDQLISSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQKQVKEKGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDN***************KIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNFWE
Disordered Region (DISEMBL)
MVDAVVSVVLDQLISSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQKQVKEKGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNFWE
Disordered Region (DISPRO)
MVDAVVSVVLDQLISSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQKQVKEKGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVM**W*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDAVVSVVLDQLISSAFEEAVERVRRVTAVKAExxxxxxxxxxxxxxxxxxxxxQVKEKGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNFWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.468	0.109	0.430	4e-24
Q7XBQ9	970	Disease resistance protei	N/A	no	0.495	0.170	0.350	1e-19
Q7XA40	992	Putative disease resistan	N/A	no	0.489	0.164	0.369	4e-19
Q9LRR4	1054	Putative disease resistan	no	no	0.528	0.166	0.331	7e-18
Q7XA39	988	Putative disease resistan	N/A	no	0.519	0.175	0.340	2e-16
Q7XA42	979	Putative disease resistan	N/A	no	0.261	0.088	0.369	2e-07
Q96RT1	1412	Protein LAP2 OS=Homo sapi	no	no	0.432	0.101	0.281	4e-07
Q80TH2	1402	Protein LAP2 OS=Mus muscu	no	no	0.432	0.102	0.281	4e-07
P0CB16	1201	Putative disease resistan	no	no	0.414	0.114	0.321	5e-06
Q39214	926	Disease resistance protei	no	no	0.252	0.090	0.344	5e-06

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  112 bits (280), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 71/165 (43%), Positives = 98/165 (59%), Gaps = 9/165 (5%)

Query: 112 LRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRC 171
           L  LRI   + ++I N  +PK++K L  LR+L LS  +IKELPE  C L NL+TL ++ C
Sbjct: 572 LSGLRILSLSHYQITN--LPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNC 629

Query: 172 TRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVC 231
             L  LP+ + +L+NLR L ++    +E MP GI++L  L+ LS FV+GR  G       
Sbjct: 630 RDLTSLPKSIAELINLRLLDLVGTPLVE-MPPGIKKLRSLQKLSNFVIGRLSG------A 682

Query: 232 KLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLEL 276
            L  LK ++HLRG L+I  L ++A   EAK   LK K  LD L L
Sbjct: 683 GLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLIL 727

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 100/177 (56%), Gaps = 12/177 (6%)

Query: 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLET 165
            ++F  LR L + G++ +    +K+P ++ +L+HLR+L L    ++ LP+  C+L NL+T
Sbjct: 522 LEKFISLRVLNL-GDSTF----NKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQT 576

Query: 166 LEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGE 225
           L++  CT+L  LP+   KL +LR+L++     L  MP  I  LT L+TL +FVVGR  G 
Sbjct: 577 LDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGY 636

Query: 226 HASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVG 282
              ++  L       +L G +KI  L  + N  +AK  +L  K NL  L + ++N G
Sbjct: 637 QLGELGNL-------NLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFG 686

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 96/176 (54%), Gaps = 13/176 (7%)

Query: 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINL 163
            +FK+F  LR L +           ++P ++ +L+HLR+L LS  +I  LP+  C+L NL
Sbjct: 529 SLFKRFVSLRVLNLSNSEF-----EQLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNL 583

Query: 164 ETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTG 223
           +TL++  C  L  LP+   KL +LR+L +++H  L  MP  I  LT L+TL  FVVG   
Sbjct: 584 QTLDLYNCQSLSCLPKQTSKLCSLRNL-VLDHCPLTSMPPRIGLLTCLKTLGYFVVGERK 642

Query: 224 GEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFD 279
           G       +L  L+ +N LRG + I  L  + N  EAK  +L  K NL  L + +D
Sbjct: 643 GY------QLGELRNLN-LRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSWD 691

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 8/184 (4%)

Query: 107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETL 166
           K    L  LR+   + ++I     P   KN+ H RFL LS   +++LP++ C + NL+TL
Sbjct: 572 KLLPTLTRLRVLSLSHYKIARLP-PDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTL 630

Query: 167 EINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEH 226
            ++ C+ LK LP  +  L+NLR+L ++    L  MPR   RL  L+TL+ F V  + G  
Sbjct: 631 LLSYCSSLKELPTDISNLINLRYLDLIG-TKLRQMPRRFGRLKSLQTLTTFFVSASDGSR 689

Query: 227 ASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDE 286
            S+      L G++ L G LKI  L  + +V +A   +L  KK+L  ++  +       E
Sbjct: 690 ISE------LGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSE 743

Query: 287 NEEN 290
           N  N
Sbjct: 744 NNTN 747

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 97/188 (51%), Gaps = 15/188 (7%)

Query: 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINL 163
            + K+F  LR L +    +      ++P ++ +L+HLR+L LS    + LPE  C+L NL
Sbjct: 521 SLLKKFVSLRVLNLSYSKL-----EQLPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQNL 575

Query: 164 ETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTG 223
           +TL+++ C  L  LP+   KL +LRHL++ +   L   P  I  LT L+TL  F+VG   
Sbjct: 576 QTLDVHNCYSLNCLPKQTSKLSSLRHLVV-DGCPLTSTPPRIGLLTCLKTLGFFIVGSKK 634

Query: 224 GEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGM 283
           G       +L  LK +N L G + I  L  + N D     +L  K NL  L + +DN G 
Sbjct: 635 GY------QLGELKNLN-LCGSISITHLERVKN-DTDAEANLSAKANLQSLSMSWDNDG- 685

Query: 284 PDENEEND 291
           P+  E  +
Sbjct: 686 PNRYESKE 693

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 5/92 (5%)

Query: 1  MVDAVVSVVLDQLISSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQKQVKEK 60
          M +A + VVLD L S    E V     +   + E  +L+S    I+AVL DA++KQ+ +K
Sbjct: 1  MAEAFIQVVLDNLTSFLKGELV----LLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNDK 56

Query: 61 GIRHWLDQLKEASCDMEDVFDEWIT-ASRRLQ 91
           + +WL +L  A+ +++D+ DE+ T A+R LQ
Sbjct: 57 PLENWLQKLNAATYEVDDILDEYKTKATRFLQ 88

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q96RT1|LAP2_HUMAN Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1 SV=2

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 16/160 (10%)

Query: 60  KGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFKQ-FTC--LRALR 116
           +G    +  L  + C +E V  E  T  + L+   +  +  ++E++ KQ F C  L  L 
Sbjct: 18  RGEEETVTTLDYSHCSLEQVPKEIFTFEKTLE--ELYLDANQIEELPKQLFNCQSLHKLS 75

Query: 117 ICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETC--CELINLETLEINRCTRL 174
           +   ++     + +P ++ NLI+LR L +S   I+E PE    C+++ +    +N    +
Sbjct: 76  LPDNDL-----TTLPASIANLINLRELDVSKNGIQEFPENIKNCKVLTIVEASVNP---I 127

Query: 175 KRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTL 214
            +LP G  +L+NL  L  +N  +LE++P    RLT L+ L
Sbjct: 128 SKLPDGFSQLLNLTQLY-LNDAFLEFLPANFGRLTKLQIL 166

Acts as an adapter for the receptor ERBB2, in epithelia. By binding the unphosphorylated 'Tyr-1248' of receptor ERBB2, it may contribute to stabilize this unphosphorylated state.

Homo sapiens (taxid: 9606)

>sp|Q80TH2|LAP2_MOUSE Protein LAP2 OS=Mus musculus GN=Erbb2ip PE=1 SV=3

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 16/160 (10%)

Query: 60  KGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFKQ-FTC--LRALR 116
           +G    +  L  + C +E V  E  T  + L+   +  +  ++E++ KQ F C  L  L 
Sbjct: 18  RGEEETVTTLDYSHCSLEQVPKEIFTFEKTLE--ELYLDANQIEELPKQLFNCQSLHKLS 75

Query: 117 ICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETC--CELINLETLEINRCTRL 174
           +   ++     + +P ++ NLI+LR L +S   I+E PE    C+++ +    +N    +
Sbjct: 76  LPDNDL-----TTLPASIANLINLRELDVSKNGIQEFPENIKNCKVLTIVEASVNP---I 127

Query: 175 KRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTL 214
            +LP G  +L+NL  L  +N  +LE++P    RLT L+ L
Sbjct: 128 SKLPDGFSQLLNLTQLY-LNDAFLEFLPANFGRLTKLQIL 166

Acts as an adapter for the receptor ERBB2, in epithelia. By binding the unphosphorylated ERBB2 'Tyr-1248' receptor, it may contribute to stabilize this unphosphorylated state.

Mus musculus (taxid: 10090)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 8/146 (5%)

Query: 139 HLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYL 198
           +L  + LS   + ELP+   EL NL+ L I +C++LK LP  +EKL NL    +     L
Sbjct: 750 YLHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKTLP-NLEKLTNLEIFDVSGCTEL 808

Query: 199 EYMPRGIERLTGLR--TLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLAN 256
           E +    E L+ L    LSE  +    GE  +K+ +L  LK +  LR   K++ L +L  
Sbjct: 809 ETIEGSFENLSCLHKVNLSETNL----GELPNKISELSNLKEL-ILRNCSKLKALPNLEK 863

Query: 257 VDEAKHVDLKEKKNLDRLELWFDNVG 282
           +      D+    NLD++E  F+++ 
Sbjct: 864 LTHLVIFDVSGCTNLDKIEESFESMS 889

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 6/90 (6%)

Query: 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINL 163
           ++      LRAL +   ++     SK+P  +  + +L++L LS  ++KELP+   +L+NL
Sbjct: 575 ELLPSLNLLRALDLEDSSI-----SKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNL 629

Query: 164 ETLEINRCTRLKRLPQGMEKLMNLRHLIIM 193
           ETL   + ++++ LP GM KL  LR+LI  
Sbjct: 630 ETLN-TKHSKIEELPLGMWKLKKLRYLITF 658

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
147772834	466	hypothetical protein VITISV_006247 [Viti	0.741	0.530	0.383	2e-34
224122700	799	nbs-lrr resistance protein [Populus tric	0.522	0.217	0.448	8e-29
359482796	769	PREDICTED: putative disease resistance p	0.615	0.266	0.399	8e-29
359482798	932	PREDICTED: putative disease resistance p	0.615	0.219	0.399	2e-28
255558779	387	hypothetical protein RCOM_1397400 [Ricin	0.681	0.586	0.362	2e-28
255549784	786	leucine-rich repeat containing protein,	0.609	0.258	0.390	3e-28
224122712	945	cc-nbs-lrr resistance protein [Populus t	0.531	0.187	0.430	3e-28
359482790	923	PREDICTED: putative disease resistance p	0.501	0.180	0.414	3e-28
359482794	880	PREDICTED: putative disease resistance p	0.618	0.234	0.384	5e-28
255558785	661	leucine-rich repeat containing protein,	0.609	0.307	0.386	9e-28

>gi|147772834|emb|CAN71669.1| hypothetical protein VITISV_006247 [Vitis vinifera]

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/284 (38%), Positives = 159/284 (55%), Gaps = 37/284 (13%)

Query: 1   MVDAVVSVVLDQLISSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQKQVKEK 60
           M DA+VS+VL+QL     ++  + +R V   + +  K T+ L  I+AVL DAE++QVK++
Sbjct: 1   MADALVSIVLEQLALIIQQQIQQELRLVVGAENDTQKPTNTLKNIRAVLVDAEKRQVKDE 60

Query: 61  GIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFK--QFTCLR----- 113
            ++ WL  LK  + DM++V DEW ++  ++QI+G+       + V     F C       
Sbjct: 61  AVKIWLKDLKGLAYDMDNVLDEWSSSILKVQIQGVDNTLTHKKKVCSCIPFPCFLIRGIH 120

Query: 114 -----ALRICGEN------------VWEIGNSKI---PKAMKNLIHLRFLKLS---WLRI 150
                AL+I   N              E+ N+ I   P+ +  +IHLR+L LS   WL  
Sbjct: 121 LRHDIALKIGEINKRLDVIAQKKDRTLELANNSIEELPREIAQMIHLRYLNLSNNAWL-- 178

Query: 151 KELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTG 210
           KELPE  C+L NL+TL ++RC RL+ LPQGM KL+NLRHL   +       P+GI RL+ 
Sbjct: 179 KELPEAMCKLCNLQTLTLSRCWRLENLPQGMGKLINLRHLET-DSTLKRVSPKGIGRLSS 237

Query: 211 LRTLSEF-VVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGD 253
           LRTL+E  VVG  G +++ KV  L+ L   N+L G L I  LG+
Sbjct: 238 LRTLAEIAVVGDDGDDNSLKVGDLQNL---NNLCGHLAISGLGN 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122700|ref|XP_002318904.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222859577|gb|EEE97124.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 114/185 (61%), Gaps = 11/185 (5%)

Query: 96  PQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKL-SWLRIKELP 154
           P     L D+FKQ TC+R+L +   ++ EI     P  +  LIHLR L L S   ++ LP
Sbjct: 421 PSLGAALPDLFKQLTCIRSLDLSKSSIKEI-----PNEVGKLIHLRHLNLASCGELESLP 475

Query: 155 ETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTL 214
           ET C+L NL++L++  C  LK+LP  + KL+ LRHL I N   ++++P+GIER+  LRTL
Sbjct: 476 ETMCDLCNLQSLDVTWCGSLKKLPNAIGKLIKLRHLRI-NGSGVDFIPKGIERIACLRTL 534

Query: 215 SEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRL 274
           + F+V   GGE+ SK   L  LK +NH+ G L IR L D ++  EA+   LK KK L RL
Sbjct: 535 NVFIVC-GGGENESKAANLRELKNLNHIGGSLGIRNLQDASDAAEAQ---LKNKKRLLRL 590

Query: 275 ELWFD 279
           EL FD
Sbjct: 591 ELDFD 595

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482796|ref|XP_003632841.1| PREDICTED: putative disease resistance protein RGA3-like [Vitis vinifera]

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/233 (39%), Positives = 126/233 (54%), Gaps = 28/233 (12%)

Query: 100 KELEDVFKQFTCLRAL--RICGENVWEIGNSKIPKAMKNLIHLRFLKLSWL-RIKELPET 156
           ++L + F   TCLRAL  + C   V      K+P A+  LIHL++L LS+   ++ELPET
Sbjct: 413 EDLPNFFPHLTCLRALDLQCCLLIV------KLPNALGKLIHLKYLDLSYCGSLRELPET 466

Query: 157 CCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSE 216
            C+L NL+TL I  C  L +LPQ M KL NLRHL  +    LEY+P+GI RLT L+TL+E
Sbjct: 467 ICDLYNLQTLNIFGCVSLIQLPQAMGKLTNLRHLQNL-LTTLEYLPKGISRLTSLQTLNE 525

Query: 217 FVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLEL 276
           FVV   G       CK+  L+ +N+LRG L IR+L  + +  EA+  +LK K +L  L L
Sbjct: 526 FVVSSDGDNK----CKIGDLRNLNNLRGELGIRVLWKVQDTREAQKAELKNKIHLQHLTL 581

Query: 277 WFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVM 329
            FD            E    +A ++       N   L   RYG    W  W+M
Sbjct: 582 DFD----------GKEGTKGVAAALEP---HPNLKSLSIQRYGD-TEWHGWMM 620

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482798|ref|XP_002268266.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/233 (39%), Positives = 126/233 (54%), Gaps = 28/233 (12%)

Query: 100 KELEDVFKQFTCLRALRI--CGENVWEIGNSKIPKAMKNLIHLRFLKLSWL-RIKELPET 156
           ++L + F   TCLRAL +  C   V      K+P A+  LIHL++L LS+   ++ELPET
Sbjct: 571 EDLPNFFPHLTCLRALDLQCCLLIV------KLPNALGKLIHLKYLDLSYCGSLRELPET 624

Query: 157 CCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSE 216
            C+L NL+TL I  C  L +LPQ M KL NLRHL  +    LEY+P+GI RLT L+TL+E
Sbjct: 625 ICDLYNLQTLNIFGCVSLIQLPQAMGKLTNLRHLQNL-LTTLEYLPKGISRLTSLQTLNE 683

Query: 217 FVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLEL 276
           FVV   G       CK+  L+ +N+LRG L IR+L  + +  EA+  +LK K +L  L L
Sbjct: 684 FVVSSDGDNK----CKIGDLRNLNNLRGELGIRVLWKVEDEREAQKAELKNKIHLQHLTL 739

Query: 277 WFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVM 329
            FD            E    +A ++       N   L   RYG    W  W+M
Sbjct: 740 DFD----------GKEGTKGVAAALEP---HPNLKSLSIQRYGD-TEWHGWMM 778

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558779|ref|XP_002520413.1| hypothetical protein RCOM_1397400 [Ricinus communis] gi|223540398|gb|EEF41968.1| hypothetical protein RCOM_1397400 [Ricinus communis]

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 135/243 (55%), Gaps = 16/243 (6%)

Query: 90  LQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR 149
           +Q KG  +    L ++F + TCLR+L +   N+ EI     P +++ LIHLR + LS+ +
Sbjct: 23  VQCKGNSKVGAALSNLFGRLTCLRSLNLSNCNLAEI-----PSSIRKLIHLRQIDLSYNK 77

Query: 150 -IKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERL 208
            +K LPE  CEL NL+TL ++ C  L +LP+G+EKL+NLRHL   N  +   +P+GI +L
Sbjct: 78  DLKGLPEALCELCNLQTLNMDGCFSLVKLPRGVEKLINLRHL--HNGGFEGVLPKGISKL 135

Query: 209 TGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEK 268
           T LR+L+ F +G+   E     C L  LK +NHL+G + I  L  +A+V EAK V+L++K
Sbjct: 136 TCLRSLNRFSIGQDNQE----ACNLGDLKNLNHLQGCVCIMRLEIVADVGEAKQVELRKK 191

Query: 269 KNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWV 328
             + RLEL F           +DE +  +  S  V    +      Y    ++  W  ++
Sbjct: 192 TEVTRLELRFGKGDAEWRKHHDDELLLALEPSPYV----EELGIYDYQGRTVFPSWMIFL 247

Query: 329 MNF 331
            NF
Sbjct: 248 SNF 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549784|ref|XP_002515943.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223544848|gb|EEF46363.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/215 (39%), Positives = 124/215 (57%), Gaps = 12/215 (5%)

Query: 90  LQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR 149
           +Q KG  +    L ++F + TCLR+L +   N+ EI     P ++  LIHLR + LS+ +
Sbjct: 365 VQCKGNSKVGAALSNLFGRLTCLRSLNLSNCNLAEI-----PSSICKLIHLRQIDLSYNK 419

Query: 150 -IKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERL 208
            +K LPE  CEL NL+TL ++ C  L +LP+G+EKL+NLRHL   N  +   +P+GI +L
Sbjct: 420 DLKGLPEALCELCNLQTLNMDGCFSLVKLPRGLEKLINLRHL--HNGGFEGVLPKGISKL 477

Query: 209 TGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEK 268
           T LR+L+ F +G+   E     C L  LK +NHL+G L I  L  +A+V EAK  +L++K
Sbjct: 478 TCLRSLNRFSIGQNNQE----ACNLGDLKNLNHLQGCLCIMGLEIVADVGEAKQAELRKK 533

Query: 269 KNLDRLELWFDNVGMPDENEENDEAITKIAKSVRV 303
             + RLEL F           +DE +  +  S  V
Sbjct: 534 TEVTRLELRFGKGDAEWRKHHDDEILLALEPSPYV 568

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122712|ref|XP_002318907.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859580|gb|EEE97127.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/186 (43%), Positives = 110/186 (59%), Gaps = 9/186 (4%)

Query: 96  PQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWL-RIKELP 154
           P     L D+FKQ TC+R+L +   ++ EI     P  +  LIHLR + L+    ++ LP
Sbjct: 570 PSLGAALPDLFKQLTCIRSLNLSASSIKEI-----PNEVGKLIHLRHVNLARCGELESLP 624

Query: 155 ETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTL 214
           ET C+L NL++L++  C  LK LP  + KL+ LRHL I     ++++P+GIER+T LRTL
Sbjct: 625 ETMCDLCNLQSLDVTWCRSLKELPNAIGKLIKLRHLRIYRS-GVDFIPKGIERITCLRTL 683

Query: 215 SEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRML-GDLANVDEAKHVDLKEKKNLDR 273
             F V   GGE+ SK   L  LK +NH+ G L IR L G + +  +A    LK KK L R
Sbjct: 684 DVFKVC-GGGENESKAANLRELKNLNHIGGSLNIRNLGGGIEDASDAAEAQLKNKKRLRR 742

Query: 274 LELWFD 279
           LEL FD
Sbjct: 743 LELVFD 748

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482790|ref|XP_002268671.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 111/176 (63%), Gaps = 9/176 (5%)

Query: 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWL-RIKELPETCCELIN 162
           +     TCLRAL +    + E    ++PK +  LIHLR+L LS+   ++ELPET C+L N
Sbjct: 571 EALGHLTCLRALDLRSNQLIE----ELPKEVGKLIHLRYLNLSYCDSLRELPETICDLYN 626

Query: 163 LETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRT 222
           L+TL I  C+RL++LPQ M KL+NLRHL   +   L+ +P+GI RL+ L+TL  F+V   
Sbjct: 627 LQTLNIQACSRLQKLPQAMGKLINLRHLENYDADDLQGLPKGIGRLSSLQTLDVFIV--- 683

Query: 223 GGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWF 278
              H +  C++E L+ +N+LRG L I+ L ++ +  EA+  +L+ + +L RL L F
Sbjct: 684 -SSHGNDECQIEDLRNLNNLRGRLSIQGLDEVKDAGEAEKAELQNRVHLQRLTLEF 738

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482794|ref|XP_002268547.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 128/229 (55%), Gaps = 23/229 (10%)

Query: 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLS-WLRIKELPETCCEL 160
           L ++F+  TCLRAL +    +      ++PKA+  LIHL++L LS   +++ELPET C+L
Sbjct: 554 LPNLFQHLTCLRALNLARNPLI----MELPKAVGKLIHLKYLSLSDCHKLRELPETICDL 609

Query: 161 INLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVG 220
            NL+TL I+RC  L  LPQ M KL+NLRHL     + L+ +P+GI RL  L+TL EFVV 
Sbjct: 610 YNLQTLNISRCFSLVELPQAMGKLINLRHLQNCGALDLKGLPKGIARLNSLQTLEEFVVS 669

Query: 221 RTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDN 280
             G       CK+  L+ +N+LRG L+IR L  + +  E +  +LK K ++  L L FD 
Sbjct: 670 SDGDAE----CKIGDLRNLNNLRGELEIRGLRKVEDAREVQKAELKNKIHIHHLTLVFD- 724

Query: 281 VGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVM 329
             + D  +   EA+        +C +W          YG  I W +W+M
Sbjct: 725 --LKDGTKGVAEALHPHPNLKSLC-IWG---------YGD-IEWHDWMM 760

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558785|ref|XP_002520416.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223540401|gb|EEF41971.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/215 (38%), Positives = 124/215 (57%), Gaps = 12/215 (5%)

Query: 90  LQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR 149
           +Q KG  +    L ++F + TCLR+L +   N+ EI     P ++  LIHLR + LS+ +
Sbjct: 336 VQCKGNSKVGAALSNLFGRLTCLRSLNLSNCNLAEI-----PSSISKLIHLRQIDLSYNK 390

Query: 150 -IKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERL 208
            +K LPE  CEL NL+TL ++ C  L +LP+G+EKL+NLRHL   N  +   +P+GI +L
Sbjct: 391 DLKGLPEALCELDNLQTLNMDGCFSLVKLPRGVEKLINLRHL--HNGGFEGVLPKGISKL 448

Query: 209 TGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEK 268
           T LR+L+ F +G+   E     C L  LK +NHL+G + I  L  +A+V EAK  +L++K
Sbjct: 449 TCLRSLNRFSIGQDNQE----ACNLGDLKNLNHLQGCVCIMGLEIVADVGEAKQAELRKK 504

Query: 269 KNLDRLELWFDNVGMPDENEENDEAITKIAKSVRV 303
             + RLEL F           +DE +  +  S  V
Sbjct: 505 TEVTRLELRFGKGDAEWRKHHDDELLLALEPSPYV 539

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.471	0.110	0.431	8.1e-29
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.528	0.166	0.331	4.4e-26
TAIR|locus:2163578	771	AT5G45500 "AT5G45500" [Arabido	0.711	0.307	0.250	3.6e-09
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.540	0.211	0.274	5.1e-07
TAIR|locus:2117149	1201	AT4G19050 [Arabidopsis thalian	0.414	0.114	0.312	8.7e-07
ZFIN|ZDB-GENE-060503-289	575	lrrc47 "leucine rich repeat co	0.528	0.306	0.255	1.2e-06
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.498	0.145	0.273	2.4e-06
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.543	0.100	0.275	2.6e-06
TAIR|locus:2037623	899	AT1G58410 [Arabidopsis thalian	0.501	0.185	0.281	2.7e-06
UNIPROTKB|F1MCA7	1536	LRRC7 "Leucine-rich repeat-con	0.564	0.122	0.262	3.2e-06

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 8.1e-29, Sum P(2) = 8.1e-29
 Identities = 72/167 (43%), Positives = 99/167 (59%)

Query:   112 LRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRC 171
             L  LRI   + ++I N  +PK++K L  LR+L LS  +IKELPE  C L NL+TL ++ C
Sbjct:   572 LSGLRILSLSHYQITN--LPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNC 629

Query:   172 TRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVC 231
               L  LP+ + +L+NLR L ++    +E MP GI++L  L+ LS FV+GR  G       
Sbjct:   630 RDLTSLPKSIAELINLRLLDLVGTPLVE-MPPGIKKLRSLQKLSNFVIGRLSG------A 682

Query:   232 KLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLEL-W 277
              L  LK ++HLRG L+I  L ++A   EAK   LK K  LD L L W
Sbjct:   683 GLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKW 729

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
 Identities = 61/184 (33%), Positives = 95/184 (51%)

Query:   107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETL 166
             K    L  LR+   + ++I     P   KN+ H RFL LS   +++LP++ C + NL+TL
Sbjct:   572 KLLPTLTRLRVLSLSHYKIARLP-PDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTL 630

Query:   167 EINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEH 226
              ++ C+ LK LP  +  L+NLR+L ++    L  MPR   RL  L+TL+ F V  + G  
Sbjct:   631 LLSYCSSLKELPTDISNLINLRYLDLIG-TKLRQMPRRFGRLKSLQTLTTFFVSASDGSR 689

Query:   227 ASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDE 286
              S+      L G++ L G LKI  L  + +V +A   +L  KK+L  ++  +       E
Sbjct:   690 ISE------LGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSE 743

Query:   287 NEEN 290
             N  N
Sbjct:   744 NNTN 747

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2163578 AT5G45500 "AT5G45500" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 63/251 (25%), Positives = 117/251 (46%)

Query:    50 SDAEQKQVKEKGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFKQF 109
             S  E K  K + + H ++ +   S    D   +W +  +  + K +   K   + + K F
Sbjct:   390 SQQEAKAKKMEDVDH-IETVFNVSERFPDFTFKWFSEDKPTRNK-LTLSKVTYQKL-KVF 446

Query:   110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWL-RIKELPETCCELINLETLEI 168
                R  R    ++ E+ N ++ K +K +I L+ L    + RI+ L +  C+L +L  L++
Sbjct:   447 YLGRWERTAKRHI-EVENPELMKNLKRMIKLKLLSFQGISRIERLDDAVCKLRDLIILDL 505

Query:   169 NRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHAS 228
               C  L++LP  ++ L  L +L I +   ++ MP+ +  L  L  L  FVV     E   
Sbjct:   506 RACYNLEKLPDKIDSLKALIYLDITDCYMIDRMPKRLSWLDNLEVLKGFVVSDATDEET- 564

Query:   229 KVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNV-----GM 283
              VC L  L  +  LR L  I +  +  ++D+   V +K  K L++L++ +  +     G 
Sbjct:   565 -VCTLAELVHLKKLRKL-SISINKENFSIDDV-FVAVKSFKKLEKLKVAWGGINTHPQGK 621

Query:   284 PDENEENDEAI 294
               ++E+ DE +
Sbjct:   622 GVDSEKGDENV 632

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 54/197 (27%), Positives = 92/197 (46%)

Query:   104 DVFKQFTCLRALRIC--GENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-IKELPETCCEL 160
             D+ K+FT  + LR+    +++++   S+I   + +L HL  L LS    + + P +  +L
Sbjct:   550 DLAKKFTDCKYLRVLDISKSIFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDL 609

Query:   161 INLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVG 220
              NL+ L+ + C  LK+L   +     L  L + N   LE  P+GI  L  L  L  F   
Sbjct:   610 HNLQILDASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPA 669

Query:   221 RTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDN 280
             R+        CKL  +K + +LR   K+ +   L   D+ +  +L    NL +L     +
Sbjct:   670 RSNNG-----CKLSEVKNLTNLR---KLGL--SLTRGDQIEEEELDSLINLSKLM----S 715

Query:   281 VGMPDENEENDEAITKI 297
             + +   +   D+ ITKI
Sbjct:   716 ISINCYDSYGDDLITKI 732

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2117149 AT4G19050 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 8.7e-07, P = 8.7e-07
 Identities = 45/144 (31%), Positives = 74/144 (51%)

Query:   139 HLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYL 198
             +L  + LS   + ELP+   EL NL+ L I +C++LK LP  +EKL NL    +     L
Sbjct:   750 YLHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKTLPN-LEKLTNLEIFDVSGCTEL 808

Query:   199 EYMPRGIERLTGLRTLSEFVVGRTG-GEHASKVCKLEALKGMNHLRGLLKIRMLGDLANV 257
             E +    E L+ L  ++   +  T  GE  +K+ +L  LK +  LR   K++ L +L  +
Sbjct:   809 ETIEGSFENLSCLHKVN---LSETNLGELPNKISELSNLKELI-LRNCSKLKALPNLEKL 864

Query:   258 DEAKHVDLKEKKNLDRLELWFDNV 281
                   D+    NLD++E  F+++
Sbjct:   865 THLVIFDVSGCTNLDKIEESFESM 888

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

ZFIN|ZDB-GENE-060503-289 lrrc47 "leucine rich repeat containing 47" [Danio rerio (taxid:7955)]

 Score = 141 (54.7 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 48/188 (25%), Positives = 91/188 (48%)

Query:    90 LQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR 149
             L++   P    E+ +  +  + L++L +C   +     + +PK++ +L  ++ L LS  +
Sbjct:    65 LEVSQCPS-LHEIHENIRNLSHLQSLILCRNKL-----TSVPKSIGHLKAVKVLDLSVNQ 118

Query:   150 IKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLT 209
             ++ LPE  C L  L TL ++ C  L  LP G+ K + L  + +  +  L  +P  +   +
Sbjct:   119 LQALPEEICALTELNTLNVS-CNSLTALPDGLSKCVKLASINVSKNE-LSRLPEDLW-CS 175

Query:   210 GLRTLSEFVVGRTGGEH-ASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEK 268
             GL  LS  +      E  +S++  L +LK ++     L+  +  +LA+  + K  + K  
Sbjct:   176 GLELLSSIIASENAIEELSSEIQNLPSLKVLDLSNNKLQ-ELPAELADCPKLKETNFKGN 234

Query:   269 KNLD-RLE 275
             K  D RLE
Sbjct:   235 KLKDKRLE 242

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
 Identities = 50/183 (27%), Positives = 83/183 (45%)

Query:   109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETC--CELINLETL 166
             FT L  LR+      ++   K+   +  LIHLR+L L +  +  +P +    +L+    L
Sbjct:   578 FTRLELLRVLDLVQAKLKGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNL 637

Query:   167 EINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEH 226
              I+  +R   +P  +  +  LR+L +         P  IER T L  LS  V   T    
Sbjct:   638 HISLSSRSNFVPNVLMGMQELRYLAL---------PSLIERKTKLE-LSNLVKLETLENF 687

Query:   227 ASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDE 286
             ++K   LE L+GM  LR  L I ++ + +   E     +   K L++LE+  D++G    
Sbjct:   688 STKNSSLEDLRGMVRLR-TLTIELIEETSL--ETLAASIGGLKYLEKLEI--DDLGSKMR 742

Query:   287 NEE 289
              +E
Sbjct:   743 TKE 745

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 144 (55.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 54/196 (27%), Positives = 97/196 (49%)

Query:   100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRI-KELPETCC 158
             K  +D FK+   LR L+I     +   +S +  ++ N  HLR+LK+      + LP +  
Sbjct:   711 KYFKDAFKEAQHLRLLQITA--TYADSDSFL-SSLVNSTHLRYLKIVTEESGRTLPRSLR 767

Query:   159 ELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFV 218
             +  +L+ L+I     + R+   +  L++LRHL+  + V        I ++T L+ L  F+
Sbjct:   768 KYYHLQVLDIGYRFGIPRISNDINNLLSLRHLVAYDEVCSSIA--NIGKMTSLQELGNFI 825

Query:   219 VGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLEL-W 277
             V     ++     ++  LK MN L  L  +  L ++   +EA    LK+K++L++L L W
Sbjct:   826 V-----QNNLSGFEVTQLKSMNKLVQL-SVSQLENVRTQEEACGAKLKDKQHLEKLHLSW 879

Query:   278 FD--NVGMPDENEEND 291
              D  N    DE+ E++
Sbjct:   880 KDAWNGYDSDESYEDE 895

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 51/181 (28%), Positives = 75/181 (41%)

Query:   109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEI 168
             FT ++ LR+      +    K+P  +  LIHLR+L L   ++  LP +   L+ L  L+I
Sbjct:   573 FTRVKLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDI 632

Query:   169 NRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHAS 228
                     +P      M +R L      YLE +PR +   T L  LS           ++
Sbjct:   633 RTDFTDIFVPN---VFMGMRELR-----YLE-LPRFMHEKTKLE-LSNLEKLEALENFST 682

Query:   229 KVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENE 288
             K   LE L+GM  LR L+ I   G       A    L+  +N   +E    N G+    E
Sbjct:   683 KSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKIME----NAGVNRMGE 738

Query:   289 E 289
             E
Sbjct:   739 E 739

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|F1MCA7 LRRC7 "Leucine-rich repeat-containing protein 7" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 54/206 (26%), Positives = 101/206 (49%)

Query:    60 KGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDVFKQ-FTCLRALRIC 118
             +G    +  L  + C ++ V  E     R L+   +  +  ++E++ KQ F C +AL+  
Sbjct:    18 RGEEEIISVLDYSHCSLQQVPKEVFNFERTLE--ELYLDANQIEELPKQLFNC-QALKKL 74

Query:   119 GENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPET--CCELINLETLEINRCTRLKR 176
               ++ +   S +P  + +L++L+ L +S   ++E PE   CC+ + +    +N    + +
Sbjct:    75 --SIPDNDLSNLPTTIASLVNLKELDISKNGVQEFPENIKCCKCLTIIEASVNP---ISK 129

Query:   177 LPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLS--EFVVGRTGGEHASKVCKLE 234
             LP G  +L+NL  L + N  +LE++P    RL  LR L   E  + +T  +   K+ +LE
Sbjct:   130 LPDGFTQLLNLTQLYL-NDAFLEFLPANFGRLAKLRILELRENHL-KTLPKSMHKLAQLE 187

Query:   235 ALK-GMNHLRGLLKIRMLGDLANVDE 259
              L  G N    L ++  L  + N+ E
Sbjct:   188 RLDLGNNEFSELPEV--LDQIQNLRE 211

GO:0014069 "postsynaptic density" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	333
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.004

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 47/170 (27%), Positives = 61/170 (35%), Gaps = 33/170 (19%)

Query: 152 ELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGL 211
           ELP +   L  LE LEI  C  L+ LP G    +NL  L  ++         G  RL   
Sbjct: 793 ELPSSIQNLHKLEHLEIENCINLETLPTG----INLESLESLDL-------SGCSRLRTF 841

Query: 212 ----RTLSEFVVGRTGGEHA-------SKVCKLEALKGMNHLRGLLKIRMLGDLANVDEA 260
                 +S+  + RTG E         S +  L+     N  R  L I  L  L  VD +
Sbjct: 842 PDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901

Query: 261 KHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNC 310
               L E         W    G P E     + I     S  VC+ + NC
Sbjct: 902 DCGALTEAS-------W---NGSPSEVAMATDNIHSKLPST-VCINFINC 940

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.72
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.64
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.49
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.48
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.46
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.37
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.32
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.31
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.27
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.19
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.15
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.15
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.07
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.94
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.76
PLN03150	623	hypothetical protein; Provisional	98.75
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.7
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.62
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.57
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.52
PLN03150	623	hypothetical protein; Provisional	98.49
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.48
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.44
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.39
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.32
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.3
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.21
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.11
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.11
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.1
PRK15386	426	type III secretion protein GogB; Provisional	98.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.03
PRK15386	426	type III secretion protein GogB; Provisional	98.0
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.99
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.96
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.92
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.81
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.73
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.71
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.22
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.11
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.05
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.04
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.97
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.9
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.86
KOG4341	483	consensus F-box protein containing LRR [General fu	96.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.51
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.74
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.64
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.05
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.24
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.29
smart00370	26	LRR Leucine-rich repeats, outliers.	92.27
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.27
KOG4341	483	consensus F-box protein containing LRR [General fu	91.38
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.78
smart00370	26	LRR Leucine-rich repeats, outliers.	89.78
KOG1947	482	consensus Leucine rich repeat proteins, some prote	88.56
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	88.2
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.92
KOG4308	478	consensus LRR-containing protein [Function unknown	87.74
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.84
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.48
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.51

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.73  E-value=8.5e-18  Score=173.27  Aligned_cols=108  Identities=19%  Similarity=0.295  Sum_probs=60.0

Q ss_pred             cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772          109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL  187 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L  187 (333)
                      +++|++|++++|.+.    ..+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|
T Consensus       139 l~~L~~L~Ls~n~~~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  214 (968)
T PLN00113        139 IPNLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL  214 (968)
T ss_pred             cCCCCEEECcCCccc----ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence            455666666666551    345555666666666666665543 455556666666666665543333455555555555


Q ss_pred             CeeecccccccccCchhhcCCCCCCccceEEeC
Q 048772          188 RHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVG  220 (333)
Q Consensus       188 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~  220 (333)
                      ++|++++|.....+|..++++++|++|++.++.
T Consensus       215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             cEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence            555555555334455555555555555554443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.72  E-value=1.1e-17  Score=172.48  Aligned_cols=158  Identities=22%  Similarity=0.329  Sum_probs=97.6

Q ss_pred             hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCChhhh
Q 048772          104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLPQGME  182 (333)
Q Consensus       104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~  182 (333)
                      ..+..+++|++|++++|.+.    ..+|.  +.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++
T Consensus       112 ~~~~~l~~L~~L~Ls~n~l~----~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~  185 (968)
T PLN00113        112 DIFTTSSSLRYLNLSNNNFT----GSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT  185 (968)
T ss_pred             HHhccCCCCCEEECcCCccc----cccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence            34447777777777777762    33442  45677777777777765 6677777777777777777444456777777


Q ss_pred             cCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhh
Q 048772          183 KLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKH  262 (333)
Q Consensus       183 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~  262 (333)
                      ++++|++|++++|.....+|..++++++|++|++..+....       ..+..+.++++|+. |++.+.    ...+..+
T Consensus       186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------~~p~~l~~l~~L~~-L~L~~n----~l~~~~p  253 (968)
T PLN00113        186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-------EIPYEIGGLTSLNH-LDLVYN----NLTGPIP  253 (968)
T ss_pred             hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-------cCChhHhcCCCCCE-EECcCc----eeccccC
Confidence            77777777777777555677777777777777776655432       23334444555554 554432    1122334


Q ss_pred             hcCcccCCCCceEEEec
Q 048772          263 VDLKEKKNLDRLELWFD  279 (333)
Q Consensus       263 ~~l~~l~~L~~L~l~~~  279 (333)
                      ..++++++|+.|+++.|
T Consensus       254 ~~l~~l~~L~~L~L~~n  270 (968)
T PLN00113        254 SSLGNLKNLQYLFLYQN  270 (968)
T ss_pred             hhHhCCCCCCEEECcCC
Confidence            44444455555555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.66  E-value=1.1e-17  Score=154.52  Aligned_cols=187  Identities=23%  Similarity=0.266  Sum_probs=126.3

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh-
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG-  180 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-  180 (333)
                      +..-++.+++||.+.+..|++..   ..+|+.|.+|..|..||||+|++++.|..+.+-+++-+|+|++ +.|..+|.. 
T Consensus        70 vhGELs~Lp~LRsv~~R~N~LKn---sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~l  145 (1255)
T KOG0444|consen   70 VHGELSDLPRLRSVIVRDNNLKN---SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSL  145 (1255)
T ss_pred             hhhhhccchhhHHHhhhcccccc---CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchH
Confidence            34445667777877777777632   5677778888888888888888888887777777888888887 667778766 


Q ss_pred             hhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhh
Q 048772          181 MEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEA  260 (333)
Q Consensus       181 ~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~  260 (333)
                      +-+|+.|-.|++++|. +..+|+.+.+|..|++|.+.+++...       ..+.+|+.++.|.. |.+++-+.   ....
T Consensus       146 finLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~h-------fQLrQLPsmtsL~v-Lhms~TqR---Tl~N  213 (1255)
T KOG0444|consen  146 FINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNH-------FQLRQLPSMTSLSV-LHMSNTQR---TLDN  213 (1255)
T ss_pred             HHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhH-------HHHhcCccchhhhh-hhcccccc---hhhc
Confidence            4577777888888777 77788778888888888777766543       45556666666665 66655332   3345


Q ss_pred             hhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772          261 KHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI  320 (333)
Q Consensus       261 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~  320 (333)
                      +|.++..+.+|..++++.|+     -+.        +|+.+..   .++|+.|+|++|.+
T Consensus       214 ~Ptsld~l~NL~dvDlS~N~-----Lp~--------vPecly~---l~~LrrLNLS~N~i  257 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSENN-----LPI--------VPECLYK---LRNLRRLNLSGNKI  257 (1255)
T ss_pred             CCCchhhhhhhhhccccccC-----CCc--------chHHHhh---hhhhheeccCcCce
Confidence            66666677777777776652     221        4455545   55555555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.64  E-value=4.3e-17  Score=162.52  Aligned_cols=255  Identities=19%  Similarity=0.252  Sum_probs=153.0

Q ss_pred             ChhHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHhhHHHhhhhcccc
Q 048772            1 MVDAVVSV-----VLDQLISSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQKQVKEKGIRHWLDQLKEASCD   75 (333)
Q Consensus         1 mae~fi~~-----~~e~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~d~~~~~~~~~~~~~~l~~~~~~~~~   75 (333)
                      |||||+..     ..++.+..|..+++.++..+.+...  .+...  ..||++++|.+-...++-....     ...+++
T Consensus       438 iaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~--~kmHDvvRe~al~ias~~~~~~-----e~~iv~  508 (889)
T KOG4658|consen  438 IAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKET--VKMHDVVREMALWIASDFGKQE-----ENQIVS  508 (889)
T ss_pred             HhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeE--EEeeHHHHHHHHHHhccccccc-----cceEEE
Confidence            68999854     4789999999999999998876543  12222  3677777766544443111100     001111


Q ss_pred             -------ccchhhHHHHHHhhhhHhcCCccchhhhhHhhhcccccceEeeccc--cccccCCCcch-HhhcccccCeeec
Q 048772           76 -------MEDVFDEWITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGEN--VWEIGNSKIPK-AMKNLIHLRFLKL  145 (333)
Q Consensus        76 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~lp~-~~~~l~~L~~L~l  145 (333)
                             ..++. .+ ..+|+........  ..+... ..++.|++|-+.++.  +     ..++. .|..|+.|++||+
T Consensus       509 ~~~~~~~~~~~~-~~-~~~rr~s~~~~~~--~~~~~~-~~~~~L~tLll~~n~~~l-----~~is~~ff~~m~~LrVLDL  578 (889)
T KOG4658|consen  509 DGVGLSEIPQVK-SW-NSVRRMSLMNNKI--EHIAGS-SENPKLRTLLLQRNSDWL-----LEISGEFFRSLPLLRVLDL  578 (889)
T ss_pred             CCcCcccccccc-ch-hheeEEEEeccch--hhccCC-CCCCccceEEEeecchhh-----hhcCHHHHhhCcceEEEEC
Confidence                   11111 11 2333333322211  111111 234467777777775  3     33333 3666888888888


Q ss_pred             cCCc-CcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCC
Q 048772          146 SWLR-IKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGG  224 (333)
Q Consensus       146 ~~~~-i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~  224 (333)
                      ++|. +.++|++|++|.|||||++++ +.++.+|.++++|+.|.+|++..+..+..+|.....|++|++|.++...... 
T Consensus       579 s~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-  656 (889)
T KOG4658|consen  579 SGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-  656 (889)
T ss_pred             CCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-
Confidence            8765 678888888888888888887 7788888888888888888888777666665556668888888876654221 


Q ss_pred             cccCcccchhhhcCcccccceeEEcccCC---------------------CCCchhhhhhcCcccCCCCceEEEeccC
Q 048772          225 EHASKVCKLEALKGMNHLRGLLKIRMLGD---------------------LANVDEAKHVDLKEKKNLDRLELWFDNV  281 (333)
Q Consensus       225 ~~~~~~~~~~~L~~L~~L~~~L~~~~~~~---------------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~  281 (333)
                          ....+.++.+|++|+. +.+.....                     ..........++..+++|+.|.+..+..
T Consensus       657 ----~~~~l~el~~Le~L~~-ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  729 (889)
T KOG4658|consen  657 ----DKLLLKELENLEHLEN-LSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGI  729 (889)
T ss_pred             ----chhhHHhhhcccchhh-heeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCC
Confidence                2345566666666665 54432211                     0012233455677788899998886654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.61  E-value=4.8e-17  Score=150.39  Aligned_cols=221  Identities=19%  Similarity=0.200  Sum_probs=154.8

Q ss_pred             HhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcE
Q 048772           87 SRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLET  165 (333)
Q Consensus        87 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~  165 (333)
                      .|.+.....+....-+|.-+..++-|.+|++++|++     ...|..+..-+++-+|+||+|+|..+|. -+-+|+.|-+
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-----~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-----REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF  154 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhh-----hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence            344444444444444555556789999999999999     8999999999999999999999999995 4579999999


Q ss_pred             EeccCCCCCCcCChhhhcCCCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccc
Q 048772          166 LEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRG  244 (333)
Q Consensus       166 L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~  244 (333)
                      |||+. +++..+|..+.+|.+|++|.+++|+ +..+- ..+..|++|++|++++.....      ...+..+..|.+|+.
T Consensus       155 LDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl------~N~Ptsld~l~NL~d  226 (1255)
T KOG0444|consen  155 LDLSN-NRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTL------DNIPTSLDDLHNLRD  226 (1255)
T ss_pred             hcccc-chhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchh------hcCCCchhhhhhhhh
Confidence            99999 8999999999999999999999998 32221 224456777777776655433      556667777777776


Q ss_pred             eeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCc----------cchHHHHHHhhhccCCCCCCCceeeE
Q 048772          245 LLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENE----------ENDEAITKIAKSVRVCLLWDNCHPLK  314 (333)
Q Consensus       245 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~L~~L~  314 (333)
                       ++++.     +.....|..+-++.+|+.|+|++|.+..-...+          ...+++...|+.+..   ++.|+.|+
T Consensus       227 -vDlS~-----N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcK---L~kL~kLy  297 (1255)
T KOG0444|consen  227 -VDLSE-----NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCK---LTKLTKLY  297 (1255)
T ss_pred             -ccccc-----cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhh---hHHHHHHH
Confidence             77664     233456788889999999999988542211111          012333334555555   55666666


Q ss_pred             EeeecC--hhhhhhhHhh
Q 048772          315 YSRYGI--WIVWKEWVMN  330 (333)
Q Consensus       315 l~~~~~--~~~~p~w~~~  330 (333)
                      +.+|.+  .+ +|.-|+.
T Consensus       298 ~n~NkL~FeG-iPSGIGK  314 (1255)
T KOG0444|consen  298 ANNNKLTFEG-IPSGIGK  314 (1255)
T ss_pred             hccCcccccC-Cccchhh
Confidence            665543  24 5665554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=8.8e-17  Score=126.34  Aligned_cols=153  Identities=21%  Similarity=0.243  Sum_probs=118.7

Q ss_pred             hcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772          108 QFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL  187 (333)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L  187 (333)
                      ++.....|.+++|++     ..+|+.|..+.+|++|++++|+++++|.+|+.++.|+.|++.- +++..+|.+||.++.|
T Consensus        31 ~~s~ITrLtLSHNKl-----~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKL-----TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPAL  104 (264)
T ss_pred             chhhhhhhhcccCce-----eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchh
Confidence            456677788899988     7888889999999999999999999999999999999999987 7888899999999999


Q ss_pred             Ceeeccccc-ccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772          188 RHLIIMNHV-YLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK  266 (333)
Q Consensus       188 ~~L~l~~~~-~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~  266 (333)
                      +.|++.+|. +-..+|..+-.|+.|+.|++.++...        -.+...++|++|+- |.+..     +..-.++.+++
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe--------~lp~dvg~lt~lqi-l~lrd-----ndll~lpkeig  170 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--------ILPPDVGKLTNLQI-LSLRD-----NDLLSLPKEIG  170 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc--------cCChhhhhhcceeE-Eeecc-----CchhhCcHHHH
Confidence            999998776 23457777888888888887765532        33455666666664 55553     22345677888


Q ss_pred             ccCCCCceEEEecc
Q 048772          267 EKKNLDRLELWFDN  280 (333)
Q Consensus       267 ~l~~L~~L~l~~~~  280 (333)
                      .+..|+.|++.+|.
T Consensus       171 ~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  171 DLTRLRELHIQGNR  184 (264)
T ss_pred             HHHHHHHHhcccce
Confidence            88888888888773

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=1.1e-16  Score=125.88  Aligned_cols=161  Identities=20%  Similarity=0.261  Sum_probs=130.4

Q ss_pred             HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcE
Q 048772           86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLET  165 (333)
Q Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~  165 (333)
                      .+.++.+.+..  ...+++-+..+++|++|++.+|++     +.+|.+++.++.||.|+++.|++..+|..+|.++-|++
T Consensus        34 ~ITrLtLSHNK--l~~vppnia~l~nlevln~~nnqi-----e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   34 NITRLTLSHNK--LTVVPPNIAELKNLEVLNLSNNQI-----EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhcccCc--eeecCCcHHHhhhhhhhhcccchh-----hhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence            44455554432  234566668899999999999999     99999999999999999999999999999999999999


Q ss_pred             EeccCCCC-CCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccc
Q 048772          166 LEINRCTR-LKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRG  244 (333)
Q Consensus       166 L~l~~~~~-~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~  244 (333)
                      ||+.+|+. -..+|..|..|..|+.|.++.|. ...+|..+++|++||.|.+..+...        ..+.+++.|+.|+.
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll--------~lpkeig~lt~lre  177 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLL--------SLPKEIGDLTRLRE  177 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchh--------hCcHHHHHHHHHHH
Confidence            99999442 23699999999999999999998 8999999999999999999877654        35667778888887


Q ss_pred             eeEEcccCCCCCchhhhhhcCccc
Q 048772          245 LLKIRMLGDLANVDEAKHVDLKEK  268 (333)
Q Consensus       245 ~L~~~~~~~~~~~~~~~~~~l~~l  268 (333)
                       |.+.+.+     ...++.+++++
T Consensus       178 -lhiqgnr-----l~vlppel~~l  195 (264)
T KOG0617|consen  178 -LHIQGNR-----LTVLPPELANL  195 (264)
T ss_pred             -Hhcccce-----eeecChhhhhh
Confidence             8887632     23445555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.49  E-value=1e-15  Score=134.90  Aligned_cols=194  Identities=22%  Similarity=0.267  Sum_probs=141.1

Q ss_pred             chhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCC
Q 048772           99 KKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLP  178 (333)
Q Consensus        99 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp  178 (333)
                      ...+|..+.+...++.|+.+.|.+     ..+|++++++..|..++..+|++.++|..++++..|..+++.+ +.++++|
T Consensus       103 ls~lp~~i~s~~~l~~l~~s~n~~-----~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~  176 (565)
T KOG0472|consen  103 LSELPEQIGSLISLVKLDCSSNEL-----KELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALP  176 (565)
T ss_pred             HhhccHHHhhhhhhhhhhccccce-----eecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCC
Confidence            345666667777888888888887     7778888888888888888888888888888888888888888 7788888


Q ss_pred             hhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCch
Q 048772          179 QGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVD  258 (333)
Q Consensus       179 ~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~  258 (333)
                      ...-+++.|++|+...|. ++.+|+.++.|.+|.-|++..+....         +.+++....|.. +...     .+..
T Consensus       177 ~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~---------lPef~gcs~L~E-lh~g-----~N~i  240 (565)
T KOG0472|consen  177 ENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRF---------LPEFPGCSLLKE-LHVG-----ENQI  240 (565)
T ss_pred             HHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhccccc---------CCCCCccHHHHH-HHhc-----ccHH
Confidence            887778889999988877 88999999999999999988776543         113333333332 2222     1223


Q ss_pred             hhhhhcC-cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhh
Q 048772          259 EAKHVDL-KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNF  331 (333)
Q Consensus       259 ~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l  331 (333)
                      +.++++. +++.+|..|+++.|+             ++++|+.+.-   +++|..|++++|.++. +|.-++++
T Consensus       241 ~~lpae~~~~L~~l~vLDLRdNk-------------lke~Pde~cl---LrsL~rLDlSNN~is~-Lp~sLgnl  297 (565)
T KOG0472|consen  241 EMLPAEHLKHLNSLLVLDLRDNK-------------LKEVPDEICL---LRSLERLDLSNNDISS-LPYSLGNL  297 (565)
T ss_pred             HhhHHHHhcccccceeeeccccc-------------cccCchHHHH---hhhhhhhcccCCcccc-CCcccccc
Confidence            4445444 477788888887552             3336666666   7778888888887777 77766653

>PLN03210 Resistant to P

Probab=99.48  E-value=7.6e-14  Score=145.41  Aligned_cols=111  Identities=29%  Similarity=0.427  Sum_probs=84.3

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc-CcccchhhhccccCcEEeccCCCCCCcCChh
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-IKELPETCCELINLETLEINRCTRLKRLPQG  180 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~  180 (333)
                      +|..| ...+|+.|++.++.+     ..+|..+..+++|++|+++++. +..+|. ++.+++|++|++++|+.+..+|.+
T Consensus       604 lP~~f-~~~~L~~L~L~~s~l-----~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s  676 (1153)
T PLN03210        604 MPSNF-RPENLVKLQMQGSKL-----EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS  676 (1153)
T ss_pred             CCCcC-CccCCcEEECcCccc-----cccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh
Confidence            34443 457888888888887     6777777788888888888765 667774 777888888888888888888888


Q ss_pred             hhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeC
Q 048772          181 MEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVG  220 (333)
Q Consensus       181 ~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~  220 (333)
                      +++|++|+.|++++|..+..+|..+ ++++|++|++.+|.
T Consensus       677 i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        677 IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence            8888888888888887778888765 57777777766553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.46  E-value=8.3e-14  Score=145.12  Aligned_cols=103  Identities=21%  Similarity=0.268  Sum_probs=68.3

Q ss_pred             cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCee
Q 048772          111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHL  190 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L  190 (333)
                      .||.|.+.++.+     ..+|..+ ...+|+.|++.++.+..+|..+..+++|++|++++|+.++.+|. ++.+++|++|
T Consensus       590 ~Lr~L~~~~~~l-----~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L  662 (1153)
T PLN03210        590 KLRLLRWDKYPL-----RCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL  662 (1153)
T ss_pred             ccEEEEecCCCC-----CCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEE
Confidence            466777766666     5666554 35666777777766666666666677777777766556666663 6666677777


Q ss_pred             ecccccccccCchhhcCCCCCCccceEEeC
Q 048772          191 IIMNHVYLEYMPRGIERLTGLRTLSEFVVG  220 (333)
Q Consensus       191 ~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~  220 (333)
                      ++++|..+..+|..+++|++|+.|++.+|.
T Consensus       663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             EecCCCCccccchhhhccCCCCEEeCCCCC
Confidence            777766666677667777777777666543

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.37  E-value=1.6e-13  Score=126.33  Aligned_cols=159  Identities=22%  Similarity=0.224  Sum_probs=82.1

Q ss_pred             cccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChh-hhcCCCCCeeecccccccccC-chhhcCCCCCCcc
Q 048772          138 IHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQG-MEKLMNLRHLIIMNHVYLEYM-PRGIERLTGLRTL  214 (333)
Q Consensus       138 ~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L  214 (333)
                      .++++|+|++|.|+.+- ..+..|.+|.+|.|++ |+++.+|.- |.+|++|+.|++..|. +..+ -..|..|.+|+.|
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nl  250 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNL  250 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhh
Confidence            34444444444444443 3344444555555555 445555432 3335555555555444 2222 1124445555555


Q ss_pred             ceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHH
Q 048772          215 SEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAI  294 (333)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  294 (333)
                      .+..+.+..    .....+-.+.++..|.  |..+.+..+      ....+-+++.|+.|++++|.+...          
T Consensus       251 klqrN~I~k----L~DG~Fy~l~kme~l~--L~~N~l~~v------n~g~lfgLt~L~~L~lS~NaI~ri----------  308 (873)
T KOG4194|consen  251 KLQRNDISK----LDDGAFYGLEKMEHLN--LETNRLQAV------NEGWLFGLTSLEQLDLSYNAIQRI----------  308 (873)
T ss_pred             hhhhcCccc----ccCcceeeecccceee--cccchhhhh------hcccccccchhhhhccchhhhhee----------
Confidence            544443322    1122333344444443  333333322      335667788889999998842111          


Q ss_pred             HHHhhhccCCCCCCCceeeEEeeecChhhhhh
Q 048772          295 TKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKE  326 (333)
Q Consensus       295 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~  326 (333)
                        ..+++.-   +++|+.|+|+.|.+.+ +|+
T Consensus       309 --h~d~Wsf---tqkL~~LdLs~N~i~~-l~~  334 (873)
T KOG4194|consen  309 --HIDSWSF---TQKLKELDLSSNRITR-LDE  334 (873)
T ss_pred             --ecchhhh---cccceeEecccccccc-CCh
Confidence              2345665   8899999999999887 654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.32  E-value=1e-13  Score=122.48  Aligned_cols=193  Identities=23%  Similarity=0.259  Sum_probs=144.8

Q ss_pred             HhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCC
Q 048772           92 IKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRC  171 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~  171 (333)
                      +.........+++.+..+-.+..++-.+|++     ..+|..++.+..|..+++.+|.++++|+..-+++.|+.||... 
T Consensus       119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i-----~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-  192 (565)
T KOG0472|consen  119 LDCSSNELKELPDSIGRLLDLEDLDATNNQI-----SSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-  192 (565)
T ss_pred             hhccccceeecCchHHHHhhhhhhhcccccc-----ccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-
Confidence            3333344455666677788888888888888     7888889889999999999999998887777799999999888 


Q ss_pred             CCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEccc
Q 048772          172 TRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRML  251 (333)
Q Consensus       172 ~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~  251 (333)
                      +.++.+|..++.|.+|..|+++.|. +..+| .|+.+..|.+|+...+....       -..+-+++|..+.. |++.. 
T Consensus       193 N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~i~~-------lpae~~~~L~~l~v-LDLRd-  261 (565)
T KOG0472|consen  193 NLLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQIEM-------LPAEHLKHLNSLLV-LDLRD-  261 (565)
T ss_pred             hhhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccHHHh-------hHHHHhccccccee-eeccc-
Confidence            7788999999999999999999888 78888 68888888888876554332       12233457777776 77664 


Q ss_pred             CCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772          252 GDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI  322 (333)
Q Consensus       252 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~  322 (333)
                          +.....|..+..+++|..|+++.|.     .+.        .+-++..   + .|+.|-+.||.+.+
T Consensus       262 ----Nklke~Pde~clLrsL~rLDlSNN~-----is~--------Lp~sLgn---l-hL~~L~leGNPlrT  311 (565)
T KOG0472|consen  262 ----NKLKEVPDEICLLRSLERLDLSNND-----ISS--------LPYSLGN---L-HLKFLALEGNPLRT  311 (565)
T ss_pred             ----cccccCchHHHHhhhhhhhcccCCc-----ccc--------CCccccc---c-eeeehhhcCCchHH
Confidence                3445677888888999999998663     222        3344444   5 67778888887765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.31  E-value=3.6e-13  Score=129.88  Aligned_cols=182  Identities=19%  Similarity=0.210  Sum_probs=125.9

Q ss_pred             hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh
Q 048772          101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG  180 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~  180 (333)
                      .+|.++..+.+|..+....|.+     ..+|..+..+..|++|+...|.++.+|+....+++|++|+|.. +.+..+|..
T Consensus       255 ~lp~wi~~~~nle~l~~n~N~l-----~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~  328 (1081)
T KOG0618|consen  255 NLPEWIGACANLEALNANHNRL-----VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDN  328 (1081)
T ss_pred             cchHHHHhcccceEecccchhH-----HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-ccccccchH
Confidence            4556777778888888888877     6777777777777777777777777887777788888888877 555555443


Q ss_pred             h--------------------------------------------------hcCCCCCeeecccccccccCchh-hcCCC
Q 048772          181 M--------------------------------------------------EKLMNLRHLIIMNHVYLEYMPRG-IERLT  209 (333)
Q Consensus       181 ~--------------------------------------------------~~L~~L~~L~l~~~~~l~~~p~~-i~~L~  209 (333)
                      +                                                  .+.++|+.|++++|. +..+|.. +.++.
T Consensus       329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle  407 (1081)
T KOG0618|consen  329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLE  407 (1081)
T ss_pred             HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchH
Confidence            2                                                  344568888888887 7888865 77888


Q ss_pred             CCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCcc
Q 048772          210 GLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEE  289 (333)
Q Consensus       210 ~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  289 (333)
                      .|++|+++++....     .+..+..++.|+.|+.    .     .+....+| ++..++.|+.+++++|..+       
T Consensus       408 ~LeeL~LSGNkL~~-----Lp~tva~~~~L~tL~a----h-----sN~l~~fP-e~~~l~qL~~lDlS~N~L~-------  465 (1081)
T KOG0618|consen  408 ELEELNLSGNKLTT-----LPDTVANLGRLHTLRA----H-----SNQLLSFP-ELAQLPQLKVLDLSCNNLS-------  465 (1081)
T ss_pred             HhHHHhcccchhhh-----hhHHHHhhhhhHHHhh----c-----CCceeech-hhhhcCcceEEecccchhh-------
Confidence            88888888776654     3444555555555552    1     22334455 7888999999999988411       


Q ss_pred             chHHHHHHhhhccCCCCCCCceeeEEeeec
Q 048772          290 NDEAITKIAKSVRVCLLWDNCHPLKYSRYG  319 (333)
Q Consensus       290 ~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~  319 (333)
                       ..    ......|   .++||+|+++||.
T Consensus       466 -~~----~l~~~~p---~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  466 -EV----TLPEALP---SPNLKYLDLSGNT  487 (1081)
T ss_pred             -hh----hhhhhCC---CcccceeeccCCc
Confidence             11    2233334   4899999999986

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.27  E-value=5.1e-13  Score=123.13  Aligned_cols=190  Identities=17%  Similarity=0.196  Sum_probs=85.2

Q ss_pred             HhhhcccccceEeeccccccccCCCcchH-hhcccccCeeeccCCcCccc-chhhhccc---------------------
Q 048772          105 VFKQFTCLRALRICGENVWEIGNSKIPKA-MKNLIHLRFLKLSWLRIKEL-PETCCELI---------------------  161 (333)
Q Consensus       105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~l-p~~i~~L~---------------------  161 (333)
                      .|.++.+|-+|.++.|++     ..+|.. |+++++|+.|+|..|+|... --.+..|.                     
T Consensus       192 ~F~~lnsL~tlkLsrNri-----ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy  266 (873)
T KOG4194|consen  192 HFDSLNSLLTLKLSRNRI-----TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY  266 (873)
T ss_pred             cccccchheeeecccCcc-----cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence            344555555566666655     444432 34456666666555554433 12333343                     


Q ss_pred             ---cCcEEeccCCCCCCcCCh-hhhcCCCCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhh
Q 048772          162 ---NLETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEAL  236 (333)
Q Consensus       162 ---~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L  236 (333)
                         ++++|+|.. |.+.++.+ ++.+|+.|++|++++|. +..+ ++++.-.++|..|++..+....    ..+..+..|
T Consensus       267 ~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~----l~~~sf~~L  340 (873)
T KOG4194|consen  267 GLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITR----LDEGSFRVL  340 (873)
T ss_pred             eecccceeeccc-chhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEecccccccc----CChhHHHHH
Confidence               444444444 33333332 23445555555555554 2222 2334444555555555444433    122333333


Q ss_pred             cCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEe
Q 048772          237 KGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYS  316 (333)
Q Consensus       237 ~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~  316 (333)
                      ..|..|.  |..+.      ........+..+++|++|+|+.|..+..     -++    .-..+..   +++|+.|.+.
T Consensus       341 ~~Le~Ln--Ls~Ns------i~~l~e~af~~lssL~~LdLr~N~ls~~-----IED----aa~~f~g---l~~LrkL~l~  400 (873)
T KOG4194|consen  341 SQLEELN--LSHNS------IDHLAEGAFVGLSSLHKLDLRSNELSWC-----IED----AAVAFNG---LPSLRKLRLT  400 (873)
T ss_pred             HHhhhhc--ccccc------hHHHHhhHHHHhhhhhhhcCcCCeEEEE-----Eec----chhhhcc---chhhhheeec
Confidence            3333333  22222      1122223445566666666665432211     011    1122233   5566777777


Q ss_pred             eecChhhhhh
Q 048772          317 RYGIWIVWKE  326 (333)
Q Consensus       317 ~~~~~~~~p~  326 (333)
                      ||++.. +|.
T Consensus       401 gNqlk~-I~k  409 (873)
T KOG4194|consen  401 GNQLKS-IPK  409 (873)
T ss_pred             Cceeee-cch
Confidence            766665 554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.24  E-value=6.6e-12  Score=125.74  Aligned_cols=91  Identities=31%  Similarity=0.468  Sum_probs=80.3

Q ss_pred             hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh
Q 048772          101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG  180 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~  180 (333)
                      ....+|..++.|++|++++|.-.    ..+|..|+.+.+||||+++++.++.+|..+++|..|.+|++..+..+..+|..
T Consensus       562 is~~ff~~m~~LrVLDLs~~~~l----~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i  637 (889)
T KOG4658|consen  562 ISGEFFRSLPLLRVLDLSGNSSL----SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI  637 (889)
T ss_pred             cCHHHHhhCcceEEEECCCCCcc----CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch
Confidence            34556888999999999987653    88999999999999999999999999999999999999999996666677777


Q ss_pred             hhcCCCCCeeecccc
Q 048772          181 MEKLMNLRHLIIMNH  195 (333)
Q Consensus       181 ~~~L~~L~~L~l~~~  195 (333)
                      +..|.+|++|.+...
T Consensus       638 ~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  638 LLELQSLRVLRLPRS  652 (889)
T ss_pred             hhhcccccEEEeecc
Confidence            777999999998764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=4.9e-13  Score=122.83  Aligned_cols=157  Identities=28%  Similarity=0.373  Sum_probs=134.4

Q ss_pred             hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh
Q 048772          101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG  180 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~  180 (333)
                      .+|.-+..|..|..+.++.|.+     ..+|..++.+..|.+++|+.|+++.+|..++.|+ |+.|.+++ ++++.+|..
T Consensus        89 elp~~~~~f~~Le~liLy~n~~-----r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~  161 (722)
T KOG0532|consen   89 ELPEEACAFVSLESLILYHNCI-----RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEE  161 (722)
T ss_pred             cCchHHHHHHHHHHHHHHhccc-----eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcc
Confidence            4455566788899999999998     8899999999999999999999999999998887 89999998 889999999


Q ss_pred             hhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhh
Q 048772          181 MEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEA  260 (333)
Q Consensus       181 ~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~  260 (333)
                      ++.+.+|.+|+.+.|. +..+|..++.|.+|+.|....+...        ..+.++..|+-.+  |+++.     +....
T Consensus       162 ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~--------~lp~El~~LpLi~--lDfSc-----Nkis~  225 (722)
T KOG0532|consen  162 IGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLE--------DLPEELCSLPLIR--LDFSC-----NKISY  225 (722)
T ss_pred             cccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhh--------hCCHHHhCCceee--eeccc-----Cceee
Confidence            9999999999999998 8999999999999999998766644        3566777776444  88875     34567


Q ss_pred             hhhcCcccCCCCceEEEecc
Q 048772          261 KHVDLKEKKNLDRLELWFDN  280 (333)
Q Consensus       261 ~~~~l~~l~~L~~L~l~~~~  280 (333)
                      +|..+.+|++||+|.|..|-
T Consensus       226 iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             cchhhhhhhhheeeeeccCC
Confidence            88999999999999999774

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.19  E-value=9.5e-12  Score=112.21  Aligned_cols=204  Identities=20%  Similarity=0.151  Sum_probs=134.9

Q ss_pred             hhhhHhhhcccccceEeecccccc--ccCCCcchHhhcccccCeeeccCCcCc-ccchhhhcccc---CcEEeccCCCCC
Q 048772          101 ELEDVFKQFTCLRALRICGENVWE--IGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELIN---LETLEINRCTRL  174 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~---L~~L~l~~~~~~  174 (333)
                      .+...+...+.++.|+++++.+-.  ..-..++..+..+++|+.|++++|.+. ..+..+..+..   |++|++++|. +
T Consensus        42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~  120 (319)
T cd00116          42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-L  120 (319)
T ss_pred             HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-c
Confidence            355666777889999999887620  000124456777889999999999976 45666766666   9999999944 4


Q ss_pred             C-----cCChhhhcC-CCCCeeecccccccc-----cCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCccccc
Q 048772          175 K-----RLPQGMEKL-MNLRHLIIMNHVYLE-----YMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLR  243 (333)
Q Consensus       175 ~-----~lp~~~~~L-~~L~~L~l~~~~~l~-----~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~  243 (333)
                      .     .+...+..+ ++|+.|++++|. +.     .++..+..+++|++|++..+.....   ........+..++.|+
T Consensus       121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~l~~~l~~~~~L~  196 (319)
T cd00116         121 GDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDA---GIRALAEGLKANCNLE  196 (319)
T ss_pred             chHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchH---HHHHHHHHHHhCCCCC
Confidence            4     234456677 899999999998 44     3445577888999999987765430   0112233455556777


Q ss_pred             ceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhcc-CCCCCCCceeeEEeeecCh
Q 048772          244 GLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVR-VCLLWDNCHPLKYSRYGIW  321 (333)
Q Consensus       244 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~L~~L~l~~~~~~  321 (333)
                      . |++.+..-.......+...+..+++|++|++++|....        ..+..+...+. +   .+.|++|++.+|...
T Consensus       197 ~-L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~--------~~~~~l~~~~~~~---~~~L~~L~l~~n~i~  263 (319)
T cd00116         197 V-LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD--------AGAAALASALLSP---NISLLTLSLSCNDIT  263 (319)
T ss_pred             E-EeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch--------HHHHHHHHHHhcc---CCCceEEEccCCCCC
Confidence            6 77776432222334455667788999999999874221        11111333221 3   578999999999764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.15  E-value=5.6e-11  Score=117.37  Aligned_cols=80  Identities=15%  Similarity=0.352  Sum_probs=35.2

Q ss_pred             cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCee
Q 048772          111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHL  190 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L  190 (333)
                      .|+.|++++|.+     ..+|..+.  .+|+.|++++|.++.+|..+.  .+|+.|++++ +.+..+|..+.  .+|+.|
T Consensus       200 ~L~~L~Ls~N~L-----tsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~-N~L~~LP~~l~--s~L~~L  267 (754)
T PRK15370        200 QITTLILDNNEL-----KSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI-NRITELPERLP--SALQSL  267 (754)
T ss_pred             CCcEEEecCCCC-----CcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC-CccCcCChhHh--CCCCEE
Confidence            355555555554     44444332  245555555555544444332  2344444444 33444444332  244444


Q ss_pred             ecccccccccCch
Q 048772          191 IIMNHVYLEYMPR  203 (333)
Q Consensus       191 ~l~~~~~l~~~p~  203 (333)
                      ++++|. +..+|.
T Consensus       268 ~Ls~N~-L~~LP~  279 (754)
T PRK15370        268 DLFHNK-ISCLPE  279 (754)
T ss_pred             ECcCCc-cCcccc
Confidence            444443 334443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.15  E-value=1.3e-11  Score=119.28  Aligned_cols=207  Identities=23%  Similarity=0.261  Sum_probs=135.5

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN  186 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~  186 (333)
                      .+.-+|++|++++|.+     ..+|..+..+.+|+.|+++.|.|.+.|.+++++.+|++|.|.+ +.+..+|.++..+++
T Consensus        42 ~~~v~L~~l~lsnn~~-----~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lkn  115 (1081)
T KOG0618|consen   42 EKRVKLKSLDLSNNQI-----SSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKN  115 (1081)
T ss_pred             hheeeeEEeecccccc-----ccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhc
Confidence            3444599999999998     8999999999999999999999999999999999999999997 889999999999999


Q ss_pred             CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcc------------cCcccchhhhcCcccccceeEEcccCCC
Q 048772          187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEH------------ASKVCKLEALKGMNHLRGLLKIRMLGDL  254 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~------------~~~~~~~~~L~~L~~L~~~L~~~~~~~~  254 (333)
                      |+.|+++.|. +..+|.-+..++.+..+...++.......            ......+.....++.  . +++...+  
T Consensus       116 l~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~-ldLr~N~--  189 (1081)
T KOG0618|consen  116 LQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--Q-LDLRYNE--  189 (1081)
T ss_pred             ccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--e-eecccch--
Confidence            9999999998 78888877777777666665441111000            000122223333333  1 3333211  


Q ss_pred             CCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHH---HHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhh
Q 048772          255 ANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAIT---KIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNF  331 (333)
Q Consensus       255 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l  331 (333)
                           .....+..+.+|+.|....|..+........-..+.   .-+..+-+...+.+|+.++++.+.... +|+|++..
T Consensus       190 -----~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~  263 (1081)
T KOG0618|consen  190 -----MEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGAC  263 (1081)
T ss_pred             -----hhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhc
Confidence                 012334455555555555443322111110000000   011122221236799999999999988 99999864

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.14  E-value=2.9e-11  Score=109.06  Aligned_cols=199  Identities=18%  Similarity=0.138  Sum_probs=127.3

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhhcccc---cCeeeccCCcCc-----ccchhhhcc-ccCcEEeccCCC
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIH---LRFLKLSWLRIK-----ELPETCCEL-INLETLEINRCT  172 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~---L~~L~l~~~~i~-----~lp~~i~~L-~~L~~L~l~~~~  172 (333)
                      +...+..+++|+.|++++|.+.    ...+..+..+..   |++|++++|.++     .+...+..+ ++|+.|++++|.
T Consensus        73 ~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116          73 LLQGLTKGCGLQELDLSDNALG----PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             HHHHHHhcCceeEEEccCCCCC----hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence            4456677889999999998872    234555655555   999999998876     334556677 899999999944


Q ss_pred             CCC-----cCChhhhcCCCCCeeecccccccc-----cCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccc
Q 048772          173 RLK-----RLPQGMEKLMNLRHLIIMNHVYLE-----YMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHL  242 (333)
Q Consensus       173 ~~~-----~lp~~~~~L~~L~~L~l~~~~~l~-----~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L  242 (333)
                       +.     .++..+..+.+|++|++++|. +.     .++..+..+++|++|++.++......   .......+..+++|
T Consensus       149 -l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~---~~~l~~~~~~~~~L  223 (319)
T cd00116         149 -LEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG---ASALAETLASLKSL  223 (319)
T ss_pred             -CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHH---HHHHHHHhcccCCC
Confidence             44     345557778899999999887 43     34445666779999998877654300   01123345566778


Q ss_pred             cceeEEcccCCCCC-chhhhhhcC-cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772          243 RGLLKIRMLGDLAN-VDEAKHVDL-KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI  320 (333)
Q Consensus       243 ~~~L~~~~~~~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~  320 (333)
                      +. |++.+..- .. ....+...+ ...+.|++|++++|.+...        ....+...+..   .++|+.+++++|..
T Consensus       224 ~~-L~ls~n~l-~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~--------~~~~l~~~~~~---~~~L~~l~l~~N~l  290 (319)
T cd00116         224 EV-LNLGDNNL-TDAGAAALASALLSPNISLLTLSLSCNDITDD--------GAKDLAEVLAE---KESLLELDLRGNKF  290 (319)
T ss_pred             CE-EecCCCcC-chHHHHHHHHHHhccCCCceEEEccCCCCCcH--------HHHHHHHHHhc---CCCccEEECCCCCC
Confidence            86 88876321 11 111111111 1247899999998753211        11114445555   67899999998877


Q ss_pred             hh
Q 048772          321 WI  322 (333)
Q Consensus       321 ~~  322 (333)
                      ..
T Consensus       291 ~~  292 (319)
T cd00116         291 GE  292 (319)
T ss_pred             cH
Confidence            53

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=4.5e-12  Score=116.63  Aligned_cols=181  Identities=23%  Similarity=0.251  Sum_probs=148.0

Q ss_pred             ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772          110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH  189 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~  189 (333)
                      .--...+++.|.+     ..+|..+..+..|..+.++.|.+..+|..+++|..|.+||++. +.+..+|..++.|+ |+.
T Consensus        75 tdt~~aDlsrNR~-----~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   75 TDTVFADLSRNRF-----SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKV  147 (722)
T ss_pred             cchhhhhcccccc-----ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-cee
Confidence            3345678888988     8999999999999999999999999999999999999999999 88999999998885 999


Q ss_pred             eecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccC
Q 048772          190 LIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKK  269 (333)
Q Consensus       190 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~  269 (333)
                      |.+++|. ++.+|..++.+..|.+|+...+...        ..+.+++.|..|+. |.+..     +....++.++..++
T Consensus       148 li~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~--------slpsql~~l~slr~-l~vrR-----n~l~~lp~El~~Lp  212 (722)
T KOG0532|consen  148 LIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQ--------SLPSQLGYLTSLRD-LNVRR-----NHLEDLPEELCSLP  212 (722)
T ss_pred             EEEecCc-cccCCcccccchhHHHhhhhhhhhh--------hchHHhhhHHHHHH-HHHhh-----hhhhhCCHHHhCCc
Confidence            9999988 8999999998899999998776644        35566777777775 55543     34456778888665


Q ss_pred             CCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhh
Q 048772          270 NLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN  330 (333)
Q Consensus       270 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~  330 (333)
                       |..|++++|+     ...        ++-.+..   +..|++|-|.+|.+.. -|.-|+.
T Consensus       213 -Li~lDfScNk-----is~--------iPv~fr~---m~~Lq~l~LenNPLqS-PPAqIC~  255 (722)
T KOG0532|consen  213 -LIRLDFSCNK-----ISY--------LPVDFRK---MRHLQVLQLENNPLQS-PPAQICE  255 (722)
T ss_pred             -eeeeecccCc-----eee--------cchhhhh---hhhheeeeeccCCCCC-ChHHHHh
Confidence             8899999985     222        5556666   8899999999999987 7777653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.07  E-value=2.6e-10  Score=112.72  Aligned_cols=168  Identities=20%  Similarity=0.245  Sum_probs=110.1

Q ss_pred             ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772          110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH  189 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~  189 (333)
                      ++|++|++++|.+     ..+|..+.  .+|+.|++++|.+..+|..+.  .+|++|++++ +.+..+|..+.  .+|++
T Consensus       220 ~nL~~L~Ls~N~L-----tsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~  287 (754)
T PRK15370        220 GNIKTLYANSNQL-----TSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRY  287 (754)
T ss_pred             cCCCEEECCCCcc-----ccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcE
Confidence            5788888888887     66776554  368888888888888887664  4788888886 67788887654  47888


Q ss_pred             eecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccC
Q 048772          190 LIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKK  269 (333)
Q Consensus       190 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~  269 (333)
                      |++++|. +..+|..+.  ++|+.|++.++....     .+..+  .   +.|+. |.+....     ...++..+  .+
T Consensus       288 L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l--~---~sL~~-L~Ls~N~-----Lt~LP~~l--~~  346 (754)
T PRK15370        288 LSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTA-----LPETL--P---PGLKT-LEAGENA-----LTSLPASL--PP  346 (754)
T ss_pred             EECCCCc-cccCcccch--hhHHHHHhcCCcccc-----CCccc--c---cccee-ccccCCc-----cccCChhh--cC
Confidence            8888886 777776543  367777777665443     11111  1   23443 4444321     11133333  25


Q ss_pred             CCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHh
Q 048772          270 NLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVM  329 (333)
Q Consensus       270 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~  329 (333)
                      +|+.|+++.|...     .        ++..     ++++|+.|+|++|.+.. +|..+.
T Consensus       347 sL~~L~Ls~N~L~-----~--------LP~~-----lp~~L~~LdLs~N~Lt~-LP~~l~  387 (754)
T PRK15370        347 ELQVLDVSKNQIT-----V--------LPET-----LPPTITTLDVSRNALTN-LPENLP  387 (754)
T ss_pred             cccEEECCCCCCC-----c--------CChh-----hcCCcCEEECCCCcCCC-CCHhHH
Confidence            7888999877421     1        2222     24589999999999888 887664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.07  E-value=1.1e-11  Score=109.40  Aligned_cols=116  Identities=22%  Similarity=0.278  Sum_probs=86.4

Q ss_pred             cchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccC-CcCcccc-hhhhccccCcEEeccCCCCCC
Q 048772           98 EKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSW-LRIKELP-ETCCELINLETLEINRCTRLK  175 (333)
Q Consensus        98 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~-~~i~~lp-~~i~~L~~L~~L~l~~~~~~~  175 (333)
                      +...++.+|+.+++||.|+++.|.|.    ..-|+.|..++.|..|-+.+ |.|+.+| ..+++|..|+.|.+.- +.+.
T Consensus        79 I~~iP~~aF~~l~~LRrLdLS~N~Is----~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~  153 (498)
T KOG4237|consen   79 ISSIPPGAFKTLHRLRRLDLSKNNIS----FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHIN  153 (498)
T ss_pred             cccCChhhccchhhhceecccccchh----hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhc
Confidence            33456778899999999999999882    22367788888887776666 7799998 5778888888888887 5555


Q ss_pred             cCC-hhhhcCCCCCeeecccccccccCch-hhcCCCCCCccceEEe
Q 048772          176 RLP-QGMEKLMNLRHLIIMNHVYLEYMPR-GIERLTGLRTLSEFVV  219 (333)
Q Consensus       176 ~lp-~~~~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~  219 (333)
                      -++ ..+..|++|..|.+..|. +..++. .+..+.+++++++..+
T Consensus       154 Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  154 CIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             chhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcC
Confidence            544 457788888888887776 677776 3777777777776443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.95  E-value=4.6e-10  Score=104.49  Aligned_cols=178  Identities=26%  Similarity=0.323  Sum_probs=136.6

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhccc-ccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLI-HLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM  185 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~  185 (333)
                      ..++.+..|++.++.+     ..+|.....+. +|+.|++++|.+..+|..++.+++|+.|+++. +.+.++|...+.++
T Consensus       113 ~~~~~l~~L~l~~n~i-----~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~  186 (394)
T COG4886         113 LELTNLTSLDLDNNNI-----TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLS  186 (394)
T ss_pred             hcccceeEEecCCccc-----ccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhh
Confidence            4557789999999998     88888888785 99999999999999998899999999999999 88999998888999


Q ss_pred             CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772          186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL  265 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l  265 (333)
                      +|+.|++++|. +..+|..++.+..|++|.+..+...        ..+..+.++..+.. +.+..     +.....+..+
T Consensus       187 ~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~--------~~~~~~~~~~~l~~-l~l~~-----n~~~~~~~~~  251 (394)
T COG4886         187 NLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSII--------ELLSSLSNLKNLSG-LELSN-----NKLEDLPESI  251 (394)
T ss_pred             hhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcce--------ecchhhhhcccccc-cccCC-----ceeeeccchh
Confidence            99999999998 8999988878888999988766322        23334455555554 44222     1222235678


Q ss_pred             cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772          266 KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI  322 (333)
Q Consensus       266 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~  322 (333)
                      +.+.+++.|+++.|....             +. .+.+   ..+|+.|+++++....
T Consensus       252 ~~l~~l~~L~~s~n~i~~-------------i~-~~~~---~~~l~~L~~s~n~~~~  291 (394)
T COG4886         252 GNLSNLETLDLSNNQISS-------------IS-SLGS---LTNLRELDLSGNSLSN  291 (394)
T ss_pred             ccccccceeccccccccc-------------cc-cccc---cCccCEEeccCccccc
Confidence            888889999999774211             22 2555   7899999999987765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.94  E-value=3.3e-10  Score=92.16  Aligned_cols=106  Identities=27%  Similarity=0.343  Sum_probs=35.9

Q ss_pred             hcccccceEeeccccccccCCCcchHhh-cccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhh-hcCC
Q 048772          108 QFTCLRALRICGENVWEIGNSKIPKAMK-NLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGM-EKLM  185 (333)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~lp~~~~-~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~-~~L~  185 (333)
                      +...++.|++.++.+     ..+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++ |.++.++..+ ..++
T Consensus        17 n~~~~~~L~L~~n~I-----~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp   88 (175)
T PF14580_consen   17 NPVKLRELNLRGNQI-----STIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLP   88 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-T
T ss_pred             ccccccccccccccc-----cccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCC
Confidence            344678888888887     4442 354 4677888888888887776 466778888888887 7787776655 3578


Q ss_pred             CCCeeecccccccccCc--hhhcCCCCCCccceEEeCCC
Q 048772          186 NLRHLIIMNHVYLEYMP--RGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~  222 (333)
                      +|++|++++|. +..+-  ..+..+++|++|++.+++.+
T Consensus        89 ~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   89 NLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             T--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence            88888888776 44433  23566777777777666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.91  E-value=2.9e-09  Score=105.07  Aligned_cols=22  Identities=14%  Similarity=0.043  Sum_probs=14.6

Q ss_pred             CCceeeEEeeecChhhhhhhHhh
Q 048772          308 DNCHPLKYSRYGIWIVWKEWVMN  330 (333)
Q Consensus       308 ~~L~~L~l~~~~~~~~~p~w~~~  330 (333)
                      .+|+.|++++|.+.. +|..++.
T Consensus       422 ~~L~~L~Ls~NqLt~-LP~sl~~  443 (788)
T PRK15387        422 SGLLSLSVYRNQLTR-LPESLIH  443 (788)
T ss_pred             hhhhhhhhccCcccc-cChHHhh
Confidence            456677777777766 7766554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.89  E-value=5.7e-10  Score=90.76  Aligned_cols=137  Identities=21%  Similarity=0.260  Sum_probs=49.0

Q ss_pred             CCcchHhhcccccCeeeccCCcCcccchhhh-ccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhh-
Q 048772          128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCC-ELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGI-  205 (333)
Q Consensus       128 ~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~-~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i-  205 (333)
                      +..| .+.+...++.|+|.+|.|+.+. .++ .+.+|+.|++++ +.++.++ .+..|++|+.|++++|. +..++.++ 
T Consensus        10 ~~~~-~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~   84 (175)
T PF14580_consen   10 EQIA-QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLD   84 (175)
T ss_dssp             ----------------------------S--TT-TT--EEE-TT-S--S--T-T----TT--EEE--SS----S-CHHHH
T ss_pred             cccc-cccccccccccccccccccccc-chhhhhcCCCEEECCC-CCCcccc-CccChhhhhhcccCCCC-CCccccchH
Confidence            4444 3455567899999999998875 465 689999999999 7898886 58899999999999998 78887666 


Q ss_pred             cCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEE
Q 048772          206 ERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELW  277 (333)
Q Consensus       206 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  277 (333)
                      ..+++|++|++.++....      ...+..|..+++|+. |++.+..- .....--...+..+++|+.|+-.
T Consensus        85 ~~lp~L~~L~L~~N~I~~------l~~l~~L~~l~~L~~-L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISD------LNELEPLSSLPKLRV-LSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HH-TT--EEE-TTS---S------CCCCGGGGG-TT--E-EE-TT-GG-GGSTTHHHHHHHH-TT-SEETTE
T ss_pred             HhCCcCCEEECcCCcCCC------hHHhHHHHcCCCcce-eeccCCcc-cchhhHHHHHHHHcChhheeCCE
Confidence            469999999998776654      344666677777776 76665221 11112222334556777766554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.86  E-value=3.4e-09  Score=104.60  Aligned_cols=90  Identities=28%  Similarity=0.265  Sum_probs=42.6

Q ss_pred             cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCee
Q 048772          111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHL  190 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L  190 (333)
                      +|+.|++.+|++     ..+|..   +++|++|++++|.++.+|..   ..+|+.|+++. +.+..+|..   ..+|+.|
T Consensus       223 ~L~~L~L~~N~L-----t~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~-N~L~~Lp~l---p~~L~~L  287 (788)
T PRK15387        223 HITTLVIPDNNL-----TSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFS-NPLTHLPAL---PSGLCKL  287 (788)
T ss_pred             CCCEEEccCCcC-----CCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccC-Cchhhhhhc---hhhcCEE
Confidence            455566666655     444432   35566666666666655532   23444555554 334444431   1234444


Q ss_pred             ecccccccccCchhhcCCCCCCccceEEe
Q 048772          191 IIMNHVYLEYMPRGIERLTGLRTLSEFVV  219 (333)
Q Consensus       191 ~l~~~~~l~~~p~~i~~L~~L~~L~~~~~  219 (333)
                      ++++|. +..+|..   +++|+.|++.++
T Consensus       288 ~Ls~N~-Lt~LP~~---p~~L~~LdLS~N  312 (788)
T PRK15387        288 WIFGNQ-LTSLPVL---PPGLQELSVSDN  312 (788)
T ss_pred             ECcCCc-ccccccc---ccccceeECCCC
Confidence            444444 3444431   234555554444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.76  E-value=5.2e-10  Score=99.06  Aligned_cols=105  Identities=26%  Similarity=0.353  Sum_probs=88.2

Q ss_pred             cccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-hhcCCCC
Q 048772          111 CLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-MEKLMNL  187 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L  187 (333)
                      ....++|..|+|     +.+|+ .|+.+++||.|||+.|.|+.| |..+..|..|..|-+.++++|+.+|.. |++|.+|
T Consensus        68 ~tveirLdqN~I-----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQI-----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCc-----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            345789999999     77775 578999999999999999976 688999999988888877999999975 8899999


Q ss_pred             CeeecccccccccCc-hhhcCCCCCCccceEEeCC
Q 048772          188 RHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGR  221 (333)
Q Consensus       188 ~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~  221 (333)
                      +.|.+.-|. +.-++ ..+..|++|..|.++++..
T Consensus       143 qrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~  176 (498)
T KOG4237|consen  143 QRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKI  176 (498)
T ss_pred             HHHhcChhh-hcchhHHHHHHhhhcchhcccchhh
Confidence            999988776 45555 4489999999999887643

>PLN03150 hypothetical protein; Provisional

Probab=98.75  E-value=1.8e-08  Score=98.81  Aligned_cols=106  Identities=18%  Similarity=0.256  Sum_probs=87.0

Q ss_pred             cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772          111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH  189 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~  189 (333)
                      .++.|+++++.+.    ..+|..++.+++|+.|+|++|.+. .+|..++.+.+|++|++++|.....+|..+++|++|++
T Consensus       419 ~v~~L~L~~n~L~----g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~  494 (623)
T PLN03150        419 FIDGLGLDNQGLR----GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEEECCCCCcc----ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence            3677888888872    678889999999999999999987 88989999999999999995544588999999999999


Q ss_pred             eecccccccccCchhhcCC-CCCCccceEEeC
Q 048772          190 LIIMNHVYLEYMPRGIERL-TGLRTLSEFVVG  220 (333)
Q Consensus       190 L~l~~~~~l~~~p~~i~~L-~~L~~L~~~~~~  220 (333)
                      |++++|.....+|..++.+ .++..+++.++.
T Consensus       495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EECcCCcccccCChHHhhccccCceEEecCCc
Confidence            9999998667899887754 355666655443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.70  E-value=4.1e-09  Score=90.48  Aligned_cols=104  Identities=25%  Similarity=0.301  Sum_probs=59.0

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN  186 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~  186 (333)
                      ...+.|..+++++|.+     ..+-.++.-++.+|+|+++.|.+..+-. +..|++|+.|||++ |.+.++-.+-.+|-|
T Consensus       281 dTWq~LtelDLS~N~I-----~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGN  353 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLI-----TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGN  353 (490)
T ss_pred             chHhhhhhccccccch-----hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcC
Confidence            3446677777777777     5666666667777777777777665544 66777777777777 444444332233444


Q ss_pred             CCeeecccccccccCchhhcCCCCCCccceEEe
Q 048772          187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVV  219 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~  219 (333)
                      .+.|.+++|. +..+ .++++|-+|..|++.++
T Consensus       354 IKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N  384 (490)
T KOG1259|consen  354 IKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSN  384 (490)
T ss_pred             Eeeeehhhhh-Hhhh-hhhHhhhhheecccccc
Confidence            4444444443 2222 23444444444444433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.62  E-value=2e-08  Score=93.55  Aligned_cols=159  Identities=21%  Similarity=0.320  Sum_probs=122.6

Q ss_pred             hhhhhHhhhcc-cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCC
Q 048772          100 KELEDVFKQFT-CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLP  178 (333)
Q Consensus       100 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp  178 (333)
                      ..++.....++ +|+.|++++|.+     ..+|..++.++.|+.|+++.|.+..+|...+.+..|+.|++++ +.+..+|
T Consensus       129 ~~i~~~~~~~~~nL~~L~l~~N~i-----~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~  202 (394)
T COG4886         129 TDIPPLIGLLKSNLKELDLSDNKI-----ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLP  202 (394)
T ss_pred             ccCccccccchhhcccccccccch-----hhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-CccccCc
Confidence            44555555564 899999999999     8887789999999999999999999999888999999999999 8899999


Q ss_pred             hhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCch
Q 048772          179 QGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVD  258 (333)
Q Consensus       179 ~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~  258 (333)
                      ..+..+.+|..|.+++|. ....+..+.+++++..|.+..+....        .+..++.+..++. |++.+..-     
T Consensus       203 ~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~--------~~~~~~~l~~l~~-L~~s~n~i-----  267 (394)
T COG4886         203 PEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED--------LPESIGNLSNLET-LDLSNNQI-----  267 (394)
T ss_pred             hhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee--------ccchhccccccce-eccccccc-----
Confidence            988888889999999996 56677778888888888754443221        1344455555665 55554221     


Q ss_pred             hhhhhcCcccCCCCceEEEecc
Q 048772          259 EAKHVDLKEKKNLDRLELWFDN  280 (333)
Q Consensus       259 ~~~~~~l~~l~~L~~L~l~~~~  280 (333)
                      .... .++.+.+|+.|+++++.
T Consensus       268 ~~i~-~~~~~~~l~~L~~s~n~  288 (394)
T COG4886         268 SSIS-SLGSLTNLRELDLSGNS  288 (394)
T ss_pred             cccc-cccccCccCEEeccCcc
Confidence            1222 27888999999998764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.57  E-value=7.6e-09  Score=88.89  Aligned_cols=134  Identities=17%  Similarity=0.135  Sum_probs=85.9

Q ss_pred             hhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCc
Q 048772          134 MKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRT  213 (333)
Q Consensus       134 ~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~  213 (333)
                      +.-.+.|..+|+++|.|+.+-+++.-++.++.|+++. |.+..+-. +..|++|++||+++|. +.++-.+-.+|-++.+
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccc-cceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEee
Confidence            3334567888888888888888888888888888888 66766644 7788888888888887 6666544456777777


Q ss_pred             cceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCC
Q 048772          214 LSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGM  283 (333)
Q Consensus       214 L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  283 (333)
                      |.+..+....         +..|.+|-.|-. |++...+ +  ..-.....+++++.|++|.|..|..+.
T Consensus       357 L~La~N~iE~---------LSGL~KLYSLvn-LDl~~N~-I--e~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  357 LKLAQNKIET---------LSGLRKLYSLVN-LDLSSNQ-I--EELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eehhhhhHhh---------hhhhHhhhhhee-ccccccc-h--hhHHHhcccccccHHHHHhhcCCCccc
Confidence            7776544322         222223323322 3333211 0  111234578888888888888775443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.52  E-value=7.6e-08  Score=64.35  Aligned_cols=57  Identities=35%  Similarity=0.534  Sum_probs=32.5

Q ss_pred             ccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCeeeccccc
Q 048772          139 HLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHV  196 (333)
Q Consensus       139 ~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~  196 (333)
                      +|++|++++|.++.+| ..+.++++|++|++++ +.+..+|. .|.++++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4556666666666555 3455566666666665 44555543 35566666666666553

...

>PLN03150 hypothetical protein; Provisional

Probab=98.49  E-value=3.2e-07  Score=90.06  Aligned_cols=99  Identities=18%  Similarity=0.355  Sum_probs=83.9

Q ss_pred             hhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCC
Q 048772          100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLP  178 (333)
Q Consensus       100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp  178 (333)
                      ..++..+.++++|+.|++++|.+.    ..+|..++.+++|+.|++++|.++ .+|..+++|++|++|++++|.....+|
T Consensus       432 g~ip~~i~~L~~L~~L~Ls~N~l~----g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP  507 (623)
T PLN03150        432 GFIPNDISKLRHLQSINLSGNSIR----GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP  507 (623)
T ss_pred             ccCCHHHhCCCCCCEEECCCCccc----CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence            456777889999999999999982    578999999999999999999987 799999999999999999966556899


Q ss_pred             hhhhcC-CCCCeeecccccccccCc
Q 048772          179 QGMEKL-MNLRHLIIMNHVYLEYMP  202 (333)
Q Consensus       179 ~~~~~L-~~L~~L~l~~~~~l~~~p  202 (333)
                      ..++.+ .++..+++.+|..+...|
T Consensus       508 ~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        508 AALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             hHHhhccccCceEEecCCccccCCC
Confidence            988764 477889998887554444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=5.8e-08  Score=87.34  Aligned_cols=84  Identities=21%  Similarity=0.225  Sum_probs=39.2

Q ss_pred             hhcccccceEeeccccccccCCCcc--hHhhcccccCeeeccCCcCc---ccchhhhccccCcEEeccCCCCCCcCChh-
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIP--KAMKNLIHLRFLKLSWLRIK---ELPETCCELINLETLEINRCTRLKRLPQG-  180 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~---~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-  180 (333)
                      +++++||...+.++.+     ...+  .....+++++.|||+.|-+.   .+-..+.+|++|+.|+++. |++....++ 
T Consensus       118 sn~kkL~~IsLdn~~V-----~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~  191 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRV-----EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSN  191 (505)
T ss_pred             hhHHhhhheeecCccc-----cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCcccc
Confidence            3445555555555554     3322  13445555555555555433   2223344555555555555 333222111 


Q ss_pred             -hhcCCCCCeeeccccc
Q 048772          181 -MEKLMNLRHLIIMNHV  196 (333)
Q Consensus       181 -~~~L~~L~~L~l~~~~  196 (333)
                       -..+++|+.|.++.|.
T Consensus       192 ~~~~l~~lK~L~l~~CG  208 (505)
T KOG3207|consen  192 TTLLLSHLKQLVLNSCG  208 (505)
T ss_pred             chhhhhhhheEEeccCC
Confidence             1234455555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.44  E-value=1.6e-07  Score=62.75  Aligned_cols=57  Identities=26%  Similarity=0.454  Sum_probs=50.8

Q ss_pred             ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRC  171 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~  171 (333)
                      ++|++|++++|++     ..+|+ .+..+++|++|++++|.++.+| ..+.++++|++|++++|
T Consensus         1 p~L~~L~l~~n~l-----~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKL-----TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTE-----SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCC-----CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            5789999999998     77774 6788999999999999999888 57899999999999994

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=6e-08  Score=87.26  Aligned_cols=115  Identities=19%  Similarity=0.177  Sum_probs=57.0

Q ss_pred             hhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc--ccchhhhccccCcEEeccCCCCCCcCChh
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK--ELPETCCELINLETLEINRCTRLKRLPQG  180 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~  180 (333)
                      -.+..++++|+.|+++.|.+....++..   -..+.+|+.|.++.|.++  .+-.....+++|+.|+|..|+.+..--.+
T Consensus       165 ~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~  241 (505)
T KOG3207|consen  165 LKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS  241 (505)
T ss_pred             HHHHHhcccchhcccccccccCCccccc---hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch
Confidence            3344556666666666665522111111   123555666666666654  23333445566666666663332222222


Q ss_pred             hhcCCCCCeeecccccccccCch--hhcCCCCCCccceEEeCC
Q 048772          181 MEKLMNLRHLIIMNHVYLEYMPR--GIERLTGLRTLSEFVVGR  221 (333)
Q Consensus       181 ~~~L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~  221 (333)
                      ...++.|+.|++++|+ +-.+|.  -++.++.|+.|++..++.
T Consensus       242 ~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi  283 (505)
T KOG3207|consen  242 TKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGI  283 (505)
T ss_pred             hhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCc
Confidence            3345566666666666 344442  255666666666555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.32  E-value=4.2e-07  Score=89.40  Aligned_cols=132  Identities=23%  Similarity=0.157  Sum_probs=85.8

Q ss_pred             cccCeeeccCCc-Cc-ccchhhh-ccccCcEEeccCCCCCC--cCChhhhcCCCCCeeecccccccccCchhhcCCCCCC
Q 048772          138 IHLRFLKLSWLR-IK-ELPETCC-ELINLETLEINRCTRLK--RLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLR  212 (333)
Q Consensus       138 ~~L~~L~l~~~~-i~-~lp~~i~-~L~~L~~L~l~~~~~~~--~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~  212 (333)
                      .+|++|++++.. +. .=|..+| -|++|+.|.+++ ..+.  ++-.-..+++||..||+++++ +..+ .++++|++||
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence            467777777754 21 2233443 467777777776 3221  112223467788888888877 5555 6788888888


Q ss_pred             ccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCC--chhhhhhcCcccCCCCceEEEec
Q 048772          213 TLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLAN--VDEAKHVDLKEKKNLDRLELWFD  279 (333)
Q Consensus       213 ~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~  279 (333)
                      +|.+.+.....      ...+..|.+|++|+. |+++.-.....  ......+.-..+++|+.|+.+++
T Consensus       199 ~L~mrnLe~e~------~~~l~~LF~L~~L~v-LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  199 VLSMRNLEFES------YQDLIDLFNLKKLRV-LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             HHhccCCCCCc------hhhHHHHhcccCCCe-eeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            88887776654      566778888888887 88887554332  23334445556889999999866

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=2.3e-07  Score=79.87  Aligned_cols=182  Identities=16%  Similarity=0.152  Sum_probs=131.8

Q ss_pred             HHHHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc-Ccc--cchhhhcc
Q 048772           84 ITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-IKE--LPETCCEL  160 (333)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~~--lp~~i~~L  160 (333)
                      ...+..+++.........+..+++.|.+|+-|.+.++.+    +..+-..+.+-..|+.|+++++. +++  +.--+.++
T Consensus       184 rsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L----dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc  259 (419)
T KOG2120|consen  184 RSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL----DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC  259 (419)
T ss_pred             hhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc----CcHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence            344445555555555567788899999999999999987    24555667888899999999987 553  33456789


Q ss_pred             ccCcEEeccCCCCCCcC-ChhhhcC-CCCCeeecccccc-cc--cCchhhcCCCCCCccceEEeCCCCCcccCcccchhh
Q 048772          161 INLETLEINRCTRLKRL-PQGMEKL-MNLRHLIIMNHVY-LE--YMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEA  235 (333)
Q Consensus       161 ~~L~~L~l~~~~~~~~l-p~~~~~L-~~L~~L~l~~~~~-l~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~  235 (333)
                      ..|+.|++++|...... ...+.+. .+|..|++++|.. +.  .+..-..++++|.+|++.++....      +..+.+
T Consensus       260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~------~~~~~~  333 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK------NDCFQE  333 (419)
T ss_pred             hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC------chHHHH
Confidence            99999999997654432 1122222 4788999998852 11  122224688999999999887665      567888


Q ss_pred             hcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEec
Q 048772          236 LKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFD  279 (333)
Q Consensus       236 L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  279 (333)
                      +.+++.|++ +.++.+..+..   .....+..++.|.+|++.++
T Consensus       334 ~~kf~~L~~-lSlsRCY~i~p---~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  334 FFKFNYLQH-LSLSRCYDIIP---ETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHhcchhee-eehhhhcCCCh---HHeeeeccCcceEEEEeccc
Confidence            888999998 88888766533   34557888999999999866

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.21  E-value=1.6e-06  Score=53.53  Aligned_cols=38  Identities=34%  Similarity=0.473  Sum_probs=18.6

Q ss_pred             ccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcC
Q 048772          139 HLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRL  177 (333)
Q Consensus       139 ~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~l  177 (333)
                      +|++|++++|.|+.+|..+++|++|++|++++ +.++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCC
Confidence            45555555555555555555555555555555 334433

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.11  E-value=5e-07  Score=84.64  Aligned_cols=109  Identities=21%  Similarity=0.325  Sum_probs=82.0

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM  185 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~  185 (333)
                      +..+++|..|++.+|.+     ..+...+..+++|++|++++|.|+.+. .+..+..|+.|++++ |.+..++ .+..++
T Consensus        91 l~~~~~l~~l~l~~n~i-----~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~  162 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKI-----EKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG-NLISDIS-GLESLK  162 (414)
T ss_pred             cccccceeeeeccccch-----hhcccchhhhhcchheecccccccccc-chhhccchhhheecc-Ccchhcc-CCccch
Confidence            45678888899999888     565544777889999999999888776 366777799999998 7777764 356688


Q ss_pred             CCCeeecccccccccCchh-hcCCCCCCccceEEeCCCC
Q 048772          186 NLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTG  223 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~  223 (333)
                      +|+.+++++|. +..++.. ...+.+++.+.+..+....
T Consensus       163 ~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  163 SLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIRE  200 (414)
T ss_pred             hhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhc
Confidence            88999998887 5666543 4777788888776655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.11  E-value=3.5e-06  Score=51.96  Aligned_cols=41  Identities=24%  Similarity=0.413  Sum_probs=35.5

Q ss_pred             ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch
Q 048772          110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE  155 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~  155 (333)
                      ++|++|++++|++     ..+|..+++|++|++|++++|.++.+|.
T Consensus         1 ~~L~~L~l~~N~i-----~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQI-----TDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS------SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCC-----cccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            4799999999999     8899889999999999999999987763

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.10  E-value=3.4e-07  Score=85.82  Aligned_cols=107  Identities=22%  Similarity=0.361  Sum_probs=86.6

Q ss_pred             hcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772          108 QFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL  187 (333)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L  187 (333)
                      .+..++.+.+..+.+     ..+-..+..+++|.+|++.+|.|..+...+..+.+|++|++++ +.|..+. .+..++.|
T Consensus        70 ~l~~l~~l~l~~n~i-----~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L  142 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLI-----AKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLL  142 (414)
T ss_pred             HhHhHHhhccchhhh-----hhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-ccccccc-chhhccch
Confidence            456677777887777     4434457889999999999999998887788999999999999 8888884 57788899


Q ss_pred             CeeecccccccccCchhhcCCCCCCccceEEeCCCC
Q 048772          188 RHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTG  223 (333)
Q Consensus       188 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~  223 (333)
                      +.|++.+|. +..++ ++..++.|+.+++.++....
T Consensus       143 ~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~  176 (414)
T KOG0531|consen  143 KELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVD  176 (414)
T ss_pred             hhheeccCc-chhcc-CCccchhhhcccCCcchhhh
Confidence            999999998 66663 46678888888887766543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.08  E-value=4.9e-06  Score=76.14  Aligned_cols=85  Identities=20%  Similarity=0.345  Sum_probs=57.2

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc-CcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-IKELPETCCELINLETLEINRCTRLKRLPQGMEKLM  185 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~  185 (333)
                      ..++.++.|++++|.+     ..+|. +  ..+|+.|.+++|. ++.+|..+.  .+|++|++++|..+..+|.+     
T Consensus        49 ~~~~~l~~L~Is~c~L-----~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s-----  113 (426)
T PRK15386         49 EEARASGRLYIKDCDI-----ESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES-----  113 (426)
T ss_pred             HHhcCCCEEEeCCCCC-----cccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc-----
Confidence            4467888999998877     66662 1  2358888888755 667776553  57889999988778888864     


Q ss_pred             CCCeeecccc--cccccCchhhcC
Q 048772          186 NLRHLIIMNH--VYLEYMPRGIER  207 (333)
Q Consensus       186 ~L~~L~l~~~--~~l~~~p~~i~~  207 (333)
                       |+.|++..+  ..+..+|.++..
T Consensus       114 -Le~L~L~~n~~~~L~~LPssLk~  136 (426)
T PRK15386        114 -VRSLEIKGSATDSIKNVPNGLTS  136 (426)
T ss_pred             -cceEEeCCCCCcccccCcchHhh
Confidence             444445433  235666665443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.07  E-value=1.8e-06  Score=75.83  Aligned_cols=205  Identities=19%  Similarity=0.098  Sum_probs=120.2

Q ss_pred             hhhhhHhhhcccccceEeeccccccccCCCcchH-------hhcccccCeeeccCCcCc-c----cchhhhccccCcEEe
Q 048772          100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKA-------MKNLIHLRFLKLSWLRIK-E----LPETCCELINLETLE  167 (333)
Q Consensus       100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~-------~~~l~~L~~L~l~~~~i~-~----lp~~i~~L~~L~~L~  167 (333)
                      ..+-+.+.+.+.|+..++++.-. .-....+|..       +-..++|+++|||+|-+. .    +-.-+..++.|+.|.
T Consensus        48 ~~i~~~L~~~~~L~~v~~sd~ft-GR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~  126 (382)
T KOG1909|consen   48 RAIAKVLASKKELREVNLSDMFT-GRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELY  126 (382)
T ss_pred             HHHHHHHhhcccceeeehHhhhc-CCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHh
Confidence            34556666777787777765421 0000223333       344568888888888754 2    223455677888888


Q ss_pred             ccCCCCCCcCC--------------hhhhcCCCCCeeecccccccccCc-----hhhcCCCCCCccceEEeCCCCCcccC
Q 048772          168 INRCTRLKRLP--------------QGMEKLMNLRHLIIMNHVYLEYMP-----RGIERLTGLRTLSEFVVGRTGGEHAS  228 (333)
Q Consensus       168 l~~~~~~~~lp--------------~~~~~L~~L~~L~l~~~~~l~~~p-----~~i~~L~~L~~L~~~~~~~~~~~~~~  228 (333)
                      |.+|. +...-              .-++.-++|+.++..+|. +...+     ..+...+.|+.+.+..+++...+   
T Consensus       127 L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG---  201 (382)
T KOG1909|consen  127 LNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEG---  201 (382)
T ss_pred             hhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCch---
Confidence            88743 33211              112334678888888876 44444     33666777888887777665410   


Q ss_pred             cccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCC
Q 048772          229 KVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWD  308 (333)
Q Consensus       229 ~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  308 (333)
                      .......+...++|+. |+++..--......++...++..++|+.|++++|.......    ..    +.+.+...  .|
T Consensus       202 ~~al~eal~~~~~Lev-Ldl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga----~a----~~~al~~~--~p  270 (382)
T KOG1909|consen  202 VTALAEALEHCPHLEV-LDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA----IA----FVDALKES--AP  270 (382)
T ss_pred             hHHHHHHHHhCCccee-eecccchhhhHHHHHHHHHhcccchheeecccccccccccH----HH----HHHHHhcc--CC
Confidence            1122445677777886 77775322222334555667777888888888775332211    12    45555441  56


Q ss_pred             CceeeEEeeecCh
Q 048772          309 NCHPLKYSRYGIW  321 (333)
Q Consensus       309 ~L~~L~l~~~~~~  321 (333)
                      +|+.|.+.||-+.
T Consensus       271 ~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  271 SLEVLELAGNEIT  283 (382)
T ss_pred             CCceeccCcchhH
Confidence            7888888887654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.03  E-value=1.9e-06  Score=75.67  Aligned_cols=203  Identities=16%  Similarity=0.071  Sum_probs=117.8

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc--------------hhhhccccCcEEe
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP--------------ETCCELINLETLE  167 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp--------------~~i~~L~~L~~L~  167 (333)
                      +.+.+..+++|++|+||+|-+-.-....+-.-+..+..|+.|-+.+|.+...-              ..++.=+.|+++.
T Consensus        84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i  163 (382)
T KOG1909|consen   84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI  163 (382)
T ss_pred             HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence            44455667789999999887621111222333566778888888888765322              1223346788888


Q ss_pred             ccCCCCCCcCCh-----hhhcCCCCCeeeccccccc----ccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcC
Q 048772          168 INRCTRLKRLPQ-----GMEKLMNLRHLIIMNHVYL----EYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKG  238 (333)
Q Consensus       168 l~~~~~~~~lp~-----~~~~L~~L~~L~l~~~~~l----~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~  238 (333)
                      ..+ |++..-+.     .+...+.|+.+.+..|..-    +-+...+..+++|+.|++.++.....+...   .-..++.
T Consensus       164 ~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~---LakaL~s  239 (382)
T KOG1909|consen  164 CGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA---LAKALSS  239 (382)
T ss_pred             eec-cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH---HHHHhcc
Confidence            888 66655443     3566678888888877521    112244678888998988887655411111   1223444


Q ss_pred             cccccceeEEcccCCCCCchhhhhhcCc-ccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEee
Q 048772          239 MNHLRGLLKIRMLGDLANVDEAKHVDLK-EKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSR  317 (333)
Q Consensus       239 L~~L~~~L~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~  317 (333)
                      +++|+. +.++.+---+....++...+. ..+.|+.|.+.+|.     +..   +....+...+..   .|.|..|.|+|
T Consensus       240 ~~~L~E-l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-----It~---da~~~la~~~~e---k~dL~kLnLng  307 (382)
T KOG1909|consen  240 WPHLRE-LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-----ITR---DAALALAACMAE---KPDLEKLNLNG  307 (382)
T ss_pred             cchhee-ecccccccccccHHHHHHHHhccCCCCceeccCcch-----hHH---HHHHHHHHHHhc---chhhHHhcCCc
Confidence            445554 444443222233344444443 25788999998883     221   111113333344   66788999988


Q ss_pred             ecC
Q 048772          318 YGI  320 (333)
Q Consensus       318 ~~~  320 (333)
                      |..
T Consensus       308 N~l  310 (382)
T KOG1909|consen  308 NRL  310 (382)
T ss_pred             ccc
Confidence            866

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.00  E-value=1.8e-05  Score=72.51  Aligned_cols=68  Identities=19%  Similarity=0.290  Sum_probs=55.8

Q ss_pred             hhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhc
Q 048772          134 MKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIE  206 (333)
Q Consensus       134 ~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~  206 (333)
                      +..+.+++.|++++|.++.+|.   --.+|+.|.+++|+.+..+|..+.  .+|++|++++|..+..+|..+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccc
Confidence            4557899999999999999983   224699999999999999997663  5899999999976888887543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.99  E-value=8.8e-07  Score=67.80  Aligned_cols=86  Identities=19%  Similarity=0.239  Sum_probs=49.2

Q ss_pred             ccccceEeeccccccccCCCcchHhhc-ccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPKAMKN-LIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLR  188 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~-l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~  188 (333)
                      ..|...++++|.+     ..+|+.+.. .+.+..|++++|.++.+|.++..++.|+.|+++. |.+...|..|..|.+|-
T Consensus        53 ~el~~i~ls~N~f-----k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   53 YELTKISLSDNGF-----KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLD  126 (177)
T ss_pred             ceEEEEecccchh-----hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHH
Confidence            3444556666665     555555432 3355666666666666666566666666666665 55566666555566666


Q ss_pred             eeecccccccccCc
Q 048772          189 HLIIMNHVYLEYMP  202 (333)
Q Consensus       189 ~L~l~~~~~l~~~p  202 (333)
                      .|+..+|. ...+|
T Consensus       127 ~Lds~~na-~~eid  139 (177)
T KOG4579|consen  127 MLDSPENA-RAEID  139 (177)
T ss_pred             HhcCCCCc-cccCc
Confidence            66665554 34444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.96  E-value=3.7e-07  Score=87.13  Aligned_cols=83  Identities=28%  Similarity=0.331  Sum_probs=36.8

Q ss_pred             hHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh-hhcCCCCCeeecccccccccCchhhcCCCC
Q 048772          132 KAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG-MEKLMNLRHLIIMNHVYLEYMPRGIERLTG  210 (333)
Q Consensus       132 ~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~  210 (333)
                      .++.-+++|+.|+|++|.+...- .+..|.+|.+||+++ |.+..+|.- ...+ +|+.|+++||. ++.+ .++.+|++
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL-~gie~Lks  255 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLRNNA-LTTL-RGIENLKS  255 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeecccH-HHhh-hhHHhhhh
Confidence            34444445555555555444333 344445555555554 444444421 1111 24455554444 3333 33444555


Q ss_pred             CCccceEEe
Q 048772          211 LRTLSEFVV  219 (333)
Q Consensus       211 L~~L~~~~~  219 (333)
                      |+.|++..+
T Consensus       256 L~~LDlsyN  264 (1096)
T KOG1859|consen  256 LYGLDLSYN  264 (1096)
T ss_pred             hhccchhHh
Confidence            555554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.92  E-value=1.4e-05  Score=78.95  Aligned_cols=107  Identities=21%  Similarity=0.224  Sum_probs=66.5

Q ss_pred             HHHhhhhHhcCCccc-hhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccC
Q 048772           85 TASRRLQIKGIPQEK-KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINL  163 (333)
Q Consensus        85 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L  163 (333)
                      ...+.+.+.|..... ..+.++-..+|.|+.|.+.+-.+..   .++..-...+++|+.||+|+++++.+ ..+++|++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence            344555555544333 2334444667888888887766521   23333445677888888888887777 567788888


Q ss_pred             cEEeccCCCCCCcCC--hhhhcCCCCCeeeccccc
Q 048772          164 ETLEINRCTRLKRLP--QGMEKLMNLRHLIIMNHV  196 (333)
Q Consensus       164 ~~L~l~~~~~~~~lp--~~~~~L~~L~~L~l~~~~  196 (333)
                      ++|.+++ -.+..-+  ..+.+|++|++||+|...
T Consensus       198 q~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  198 QVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HHHhccC-CCCCchhhHHHHhcccCCCeeeccccc
Confidence            8887776 3333322  246677888888887654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.81  E-value=1.5e-06  Score=83.14  Aligned_cols=113  Identities=19%  Similarity=0.290  Sum_probs=86.9

Q ss_pred             hhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCC
Q 048772          100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLP  178 (333)
Q Consensus       100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp  178 (333)
                      ..++..+.-++.|+.|+|+.|++     ... +.+..+++|+.|||+.|.+..+|. +...+. |+.|.+++ |-++.+ 
T Consensus       177 ~~mD~SLqll~ale~LnLshNk~-----~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL-  247 (1096)
T KOG1859|consen  177 VLMDESLQLLPALESLNLSHNKF-----TKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTTL-  247 (1096)
T ss_pred             HhHHHHHHHHHHhhhhccchhhh-----hhh-HHHHhcccccccccccchhccccccchhhhh-heeeeecc-cHHHhh-
Confidence            34566667778899999999998     444 478889999999999999998884 333444 99999998 767777 


Q ss_pred             hhhhcCCCCCeeecccccccccCch--hhcCCCCCCccceEEeCCC
Q 048772          179 QGMEKLMNLRHLIIMNHVYLEYMPR--GIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       179 ~~~~~L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~  222 (333)
                      .++.+|.+|+.||+++|- +.....  -++.|..|..|++.+++.+
T Consensus       248 ~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  248 RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            468899999999999886 333321  2567778888888877654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=3e-06  Score=73.10  Aligned_cols=183  Identities=16%  Similarity=0.077  Sum_probs=104.5

Q ss_pred             cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCCh--hhhcCCCC
Q 048772          111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLPQ--GMEKLMNL  187 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~~~~L~~L  187 (333)
                      .|+.|+++...+..   ..+-.-+..+.+|+-|.+.++++. .+-..|.+=.+|+.|+++.|+.+++-..  -+.+++.|
T Consensus       186 Rlq~lDLS~s~it~---stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITV---STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeH---HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            47777777766521   222233566777788888877765 4555666667788888888777765332  25677788


Q ss_pred             CeeecccccccccCc-hhhcCC-CCCCccceEEeCCCCCcccCcccchhhh-cCcccccceeEEcccCCCCCchhhhhhc
Q 048772          188 RHLIIMNHVYLEYMP-RGIERL-TGLRTLSEFVVGRTGGEHASKVCKLEAL-KGMNHLRGLLKIRMLGDLANVDEAKHVD  264 (333)
Q Consensus       188 ~~L~l~~~~~l~~~p-~~i~~L-~~L~~L~~~~~~~~~~~~~~~~~~~~~L-~~L~~L~~~L~~~~~~~~~~~~~~~~~~  264 (333)
                      ..|+++.|......- ..+... .+|..|++.++...-     ....+.-| ...++|-. |+++..-..   .......
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----~~sh~~tL~~rcp~l~~-LDLSD~v~l---~~~~~~~  333 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----QKSHLSTLVRRCPNLVH-LDLSDSVML---KNDCFQE  333 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----hhhHHHHHHHhCCceee-ecccccccc---CchHHHH
Confidence            888888776322211 111111 245556665544321     11222222 23444544 555554332   2355667


Q ss_pred             CcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeec
Q 048772          265 LKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYG  319 (333)
Q Consensus       265 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~  319 (333)
                      +-+++.|++|.++-|+    +..   .+    .+-.+..   .|.|.+|++.|+-
T Consensus       334 ~~kf~~L~~lSlsRCY----~i~---p~----~~~~l~s---~psl~yLdv~g~v  374 (419)
T KOG2120|consen  334 FFKFNYLQHLSLSRCY----DII---PE----TLLELNS---KPSLVYLDVFGCV  374 (419)
T ss_pred             HHhcchheeeehhhhc----CCC---hH----Heeeecc---CcceEEEEecccc
Confidence            7788889999888664    211   01    2223344   7789999988873

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.71  E-value=1.1e-05  Score=61.92  Aligned_cols=98  Identities=22%  Similarity=0.257  Sum_probs=54.6

Q ss_pred             ccceEeeccccccccCCCcchH---hhcccccCeeeccCCcCcccchhhhcc-ccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772          112 LRALRICGENVWEIGNSKIPKA---MKNLIHLRFLKLSWLRIKELPETCCEL-INLETLEINRCTRLKRLPQGMEKLMNL  187 (333)
Q Consensus       112 L~~L~l~~~~~~~~~~~~lp~~---~~~l~~L~~L~l~~~~i~~lp~~i~~L-~~L~~L~l~~~~~~~~lp~~~~~L~~L  187 (333)
                      +..++++.|.+     ..+++.   +....+|...++++|.+..+|+.+... +.+++|++.. +.+.++|..+..++.|
T Consensus        29 ~h~ldLssc~l-----m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aL  102 (177)
T KOG4579|consen   29 LHFLDLSSCQL-----MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPAL  102 (177)
T ss_pred             hhhcccccchh-----hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHh
Confidence            34455555554     333333   233445555566666666666555433 3566666665 5566666666666666


Q ss_pred             CeeecccccccccCchhhcCCCCCCccce
Q 048772          188 RHLIIMNHVYLEYMPRGIERLTGLRTLSE  216 (333)
Q Consensus       188 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~  216 (333)
                      +.|++++|+ +...|..+..|.+|-.|+.
T Consensus       103 r~lNl~~N~-l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen  103 RSLNLRFNP-LNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             hhcccccCc-cccchHHHHHHHhHHHhcC
Confidence            666666666 5556655555555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.00013  Score=63.28  Aligned_cols=90  Identities=21%  Similarity=0.222  Sum_probs=54.0

Q ss_pred             hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhh-hccccCcEEeccCCCCCC--cCChh
Q 048772          104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETC-CELINLETLEINRCTRLK--RLPQG  180 (333)
Q Consensus       104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~--~lp~~  180 (333)
                      .+-..+..++.+++.+|.+-+-  +.+-..+.+|++|++|+++.|++.+-..+. ..+.+|++|-|.+ +.+.  .....
T Consensus        65 ~~~~~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~  141 (418)
T KOG2982|consen   65 LFGSSVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSS  141 (418)
T ss_pred             HHHHHhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhh
Confidence            3335567788888888876110  122333467888888888888754222222 3566788888877 5432  34444


Q ss_pred             hhcCCCCCeeeccccc
Q 048772          181 MEKLMNLRHLIIMNHV  196 (333)
Q Consensus       181 ~~~L~~L~~L~l~~~~  196 (333)
                      +..++.++.|+++.|+
T Consensus       142 l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDNS  157 (418)
T ss_pred             hhcchhhhhhhhccch
Confidence            5666777777766653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.18  E-value=0.00035  Score=57.24  Aligned_cols=77  Identities=22%  Similarity=0.299  Sum_probs=31.1

Q ss_pred             CeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhc-CCCCCeeecccccccccCch--hhcCCCCCCccceE
Q 048772          141 RFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEK-LMNLRHLIIMNHVYLEYMPR--GIERLTGLRTLSEF  217 (333)
Q Consensus       141 ~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~-L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~  217 (333)
                      ..+||++|.+..++. +..+..|.+|.+++ |+|..+-..+.. +++|..|.+.+|+ +..+-+  .+..++.|++|.+.
T Consensus        45 d~iDLtdNdl~~l~~-lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   45 DAIDLTDNDLRKLDN-LPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ceecccccchhhccc-CCCccccceEEecC-CcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeec
Confidence            334444444433321 23344444444444 444444333332 2334444444444 333221  13344444444444


Q ss_pred             EeC
Q 048772          218 VVG  220 (333)
Q Consensus       218 ~~~  220 (333)
                      +++
T Consensus       122 ~Np  124 (233)
T KOG1644|consen  122 GNP  124 (233)
T ss_pred             CCc
Confidence            443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.11  E-value=0.00026  Score=60.25  Aligned_cols=111  Identities=22%  Similarity=0.273  Sum_probs=73.7

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc--Cc-ccchhhhccccCcEEeccCCCCCCcCC
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR--IK-ELPETCCELINLETLEINRCTRLKRLP  178 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~--i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp  178 (333)
                      +......+..|..|++.++.+     ..+ ..+..|++|+.|.++.|+  +. .++-..-++++|++|++++ |+++.+-
T Consensus        35 ~~gl~d~~~~le~ls~~n~gl-----tt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~ls  107 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGL-----TTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLS  107 (260)
T ss_pred             cccccccccchhhhhhhccce-----eec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Ccccccc
Confidence            334444566677777776666     222 235568899999999994  33 5665566679999999999 6665421


Q ss_pred             --hhhhcCCCCCeeecccccccccCc----hhhcCCCCCCccceEEeC
Q 048772          179 --QGMEKLMNLRHLIIMNHVYLEYMP----RGIERLTGLRTLSEFVVG  220 (333)
Q Consensus       179 --~~~~~L~~L~~L~l~~~~~l~~~p----~~i~~L~~L~~L~~~~~~  220 (333)
                        ..+..+.+|..|++.+|.. ..+-    ..+.-|++|..|+...+.
T Consensus       108 tl~pl~~l~nL~~Ldl~n~~~-~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  108 TLRPLKELENLKSLDLFNCSV-TNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             ccchhhhhcchhhhhcccCCc-cccccHHHHHHHHhhhhccccccccC
Confidence              1256778888999988873 3332    125667888888876654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=9.4e-05  Score=63.49  Aligned_cols=103  Identities=18%  Similarity=0.241  Sum_probs=72.1

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh--hhhcC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ--GMEKL  184 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~~~~L  184 (333)
                      +.+.+.+.|++-||.+     ..+ ....+|+.|++|.|+-|.|+.+. .+..++.|+.|+|+. |.|..+-+  -+.+|
T Consensus        16 sdl~~vkKLNcwg~~L-----~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknl   87 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGL-----DDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNL   87 (388)
T ss_pred             hHHHHhhhhcccCCCc-----cHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcC
Confidence            3455667778888877     444 24567888888888888888775 367788888888888 66666543  35677


Q ss_pred             CCCCeeecccccccccCch-----hhcCCCCCCccceE
Q 048772          185 MNLRHLIIMNHVYLEYMPR-----GIERLTGLRTLSEF  217 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~~p~-----~i~~L~~L~~L~~~  217 (333)
                      ++|+.|-+..|+....-+.     .+.-|++|+.|+-.
T Consensus        88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv  125 (388)
T KOG2123|consen   88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV  125 (388)
T ss_pred             chhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence            8888888888776555543     25667777777743

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.04  E-value=0.00027  Score=60.54  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=18.3

Q ss_pred             hccccCcEEeccCCCCCCcCChh----hhcCCCCCeeeccccc
Q 048772          158 CELINLETLEINRCTRLKRLPQG----MEKLMNLRHLIIMNHV  196 (333)
Q Consensus       158 ~~L~~L~~L~l~~~~~~~~lp~~----~~~L~~L~~L~l~~~~  196 (333)
                      -++++|+..+||.|-.-...|..    |.+-+.|.||.+++|.
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence            34555666666553222233332    2333455555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.97  E-value=0.002  Score=55.38  Aligned_cols=172  Identities=13%  Similarity=0.029  Sum_probs=100.6

Q ss_pred             hhcccccCeeeccCCcCc-----ccchhhhccccCcEEeccCCCCCC----cCChh-------hhcCCCCCeeecccccc
Q 048772          134 MKNLIHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCTRLK----RLPQG-------MEKLMNLRHLIIMNHVY  197 (333)
Q Consensus       134 ~~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~----~lp~~-------~~~L~~L~~L~l~~~~~  197 (333)
                      +..+..+..++||+|.|.     .+...|.+-.+|+..+++. -...    .+|++       +-++++|+..+++.|..
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            344566667777777654     2334455556677776664 2221    33333       45789999999999974


Q ss_pred             cccCchh----hcCCCCCCccceEEeCCCCCcccCcccchh----------hhcCcccccceeEEcccCCCCCchhhhhh
Q 048772          198 LEYMPRG----IERLTGLRTLSEFVVGRTGGEHASKVCKLE----------ALKGMNHLRGLLKIRMLGDLANVDEAKHV  263 (333)
Q Consensus       198 l~~~p~~----i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~----------~L~~L~~L~~~L~~~~~~~~~~~~~~~~~  263 (333)
                      -...|..    |.+-+.|.||.+.+++...    ..+..++          ...+-+.|+. ......+-.+........
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp----~aG~rigkal~~la~nKKaa~kp~Le~-vicgrNRlengs~~~~a~  179 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGP----IAGGRIGKALFHLAYNKKAADKPKLEV-VICGRNRLENGSKELSAA  179 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCc----cchhHHHHHHHHHHHHhhhccCCCceE-EEeccchhccCcHHHHHH
Confidence            4555543    6777899999999887664    1222222          1122345664 333322222222222333


Q ss_pred             cCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecCh
Q 048772          264 DLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIW  321 (333)
Q Consensus       264 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~  321 (333)
                      -+..-.+|+.+.+..|.+.-.       .-.+-++..+..   +++|+.|+|..|.++
T Consensus       180 ~l~sh~~lk~vki~qNgIrpe-------gv~~L~~~gl~y---~~~LevLDlqDNtft  227 (388)
T COG5238         180 LLESHENLKEVKIQQNGIRPE-------GVTMLAFLGLFY---SHSLEVLDLQDNTFT  227 (388)
T ss_pred             HHHhhcCceeEEeeecCcCcc-------hhHHHHHHHHHH---hCcceeeeccccchh
Confidence            344446899999998853222       111225667777   889999999887653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.90  E-value=0.00085  Score=55.07  Aligned_cols=104  Identities=21%  Similarity=0.261  Sum_probs=77.8

Q ss_pred             cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhcc-ccCcEEeccCCCCCCcCCh--hhhcCC
Q 048772          109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCEL-INLETLEINRCTRLKRLPQ--GMEKLM  185 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L-~~L~~L~l~~~~~~~~lp~--~~~~L~  185 (333)
                      ..+...+++++|.+     ..++ .+..++.|..|.+.+|+|+.+-+.++.+ ++|..|.+.+ |.+.++-+  -+..++
T Consensus        41 ~d~~d~iDLtdNdl-----~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p  113 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDL-----RKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCP  113 (233)
T ss_pred             ccccceecccccch-----hhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCC
Confidence            45677889999988     5543 4777889999999999999887777654 5799999998 66766532  256788


Q ss_pred             CCCeeecccccccccCch----hhcCCCCCCccceEEeC
Q 048772          186 NLRHLIIMNHVYLEYMPR----GIERLTGLRTLSEFVVG  220 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~  220 (333)
                      +|+.|.+-+|+ ...-+.    .+.++++|++|+...+.
T Consensus       114 ~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  114 KLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence            99999998887 444332    26788888888876554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.0018  Score=56.30  Aligned_cols=165  Identities=16%  Similarity=0.189  Sum_probs=94.0

Q ss_pred             hhhhhHhhhcccccceEeeccccccccCCCcchHh-hcccccCeeeccCCcCc--ccchhhhccccCcEEeccCCC----
Q 048772          100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAM-KNLIHLRFLKLSWLRIK--ELPETCCELINLETLEINRCT----  172 (333)
Q Consensus       100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~-~~l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~----  172 (333)
                      ..+-.++.++|.|++|+++.|++     .....+. -.+++|++|-|.++.+.  ..-.....++.++.|.++.|+    
T Consensus        87 seI~~ile~lP~l~~LNls~N~L-----~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~  161 (418)
T KOG2982|consen   87 SEIGAILEQLPALTTLNLSCNSL-----SSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQL  161 (418)
T ss_pred             HHHHHHHhcCccceEeeccCCcC-----CCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhh
Confidence            44566778999999999999987     2211222 34678999988887754  344455666666666666521    


Q ss_pred             -----CCCcCChh---h-----------------hcCCCCCeeecccccccccCc--hhhcCCCCCCccceEEeCCCCCc
Q 048772          173 -----RLKRLPQG---M-----------------EKLMNLRHLIIMNHVYLEYMP--RGIERLTGLRTLSEFVVGRTGGE  225 (333)
Q Consensus       173 -----~~~~lp~~---~-----------------~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~~~~  225 (333)
                           .+......   +                 ...+|+..+-+..|+ +....  .+...++.+.-|++..+.+..  
T Consensus       162 n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~ids--  238 (418)
T KOG2982|consen  162 NLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNIDS--  238 (418)
T ss_pred             ccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhccccccc--
Confidence                 11111100   1                 112344444444444 22222  234455566666666666665  


Q ss_pred             ccCcccchhhhcCcccccceeEEcccCCCCC--chhhhhhcCcccCCCCceEEE
Q 048772          226 HASKVCKLEALKGMNHLRGLLKIRMLGDLAN--VDEAKHVDLKEKKNLDRLELW  277 (333)
Q Consensus       226 ~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~  277 (333)
                          ...+.+|..+++|+. |.+....-...  ..+...--++.++++|.|+=+
T Consensus       239 ----wasvD~Ln~f~~l~d-lRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  239 ----WASVDALNGFPQLVD-LRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             ----HHHHHHHcCCchhhe-eeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence                667788888877776 66654322111  123333456788888877543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.60  E-value=0.0017  Score=58.84  Aligned_cols=141  Identities=15%  Similarity=0.038  Sum_probs=80.9

Q ss_pred             cccCcEEeccCCCCCCcCChh--hhcCCCCCeeecccccccccCc-hhhc-CCCCCCccceEEeCCCCCcccCcccchhh
Q 048772          160 LINLETLEINRCTRLKRLPQG--MEKLMNLRHLIIMNHVYLEYMP-RGIE-RLTGLRTLSEFVVGRTGGEHASKVCKLEA  235 (333)
Q Consensus       160 L~~L~~L~l~~~~~~~~lp~~--~~~L~~L~~L~l~~~~~l~~~p-~~i~-~L~~L~~L~~~~~~~~~~~~~~~~~~~~~  235 (333)
                      +..||+|+.++|+.+...+-+  ..+..+|+.|-+++|+.++..- ..++ +...|+.+++..+....      ...+.+
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~------d~tL~s  366 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT------DGTLAS  366 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh------hhhHhh
Confidence            455677777776665543321  2245677777777776443322 1122 45567777666555433      222333


Q ss_pred             h-cCcccccceeEEcccCCCCCc-hhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceee
Q 048772          236 L-KGMNHLRGLLKIRMLGDLANV-DEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPL  313 (333)
Q Consensus       236 L-~~L~~L~~~L~~~~~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L  313 (333)
                      + .+.+.|+. +.+..++..++. ...+...-..+..|..|.++       +++.+.+.    .++.+..   +++|+.+
T Consensus       367 ls~~C~~lr~-lslshce~itD~gi~~l~~~~c~~~~l~~lEL~-------n~p~i~d~----~Le~l~~---c~~Leri  431 (483)
T KOG4341|consen  367 LSRNCPRLRV-LSLSHCELITDEGIRHLSSSSCSLEGLEVLELD-------NCPLITDA----TLEHLSI---CRNLERI  431 (483)
T ss_pred             hccCCchhcc-CChhhhhhhhhhhhhhhhhccccccccceeeec-------CCCCchHH----HHHHHhh---Cccccee
Confidence            3 24566665 666655444332 11222333456778888887       44555555    7788888   8899999


Q ss_pred             EEeeecCh
Q 048772          314 KYSRYGIW  321 (333)
Q Consensus       314 ~l~~~~~~  321 (333)
                      ++.+++..
T Consensus       432 ~l~~~q~v  439 (483)
T KOG4341|consen  432 ELIDCQDV  439 (483)
T ss_pred             eeechhhh
Confidence            99888764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.60  E-value=0.00094  Score=34.34  Aligned_cols=19  Identities=26%  Similarity=0.492  Sum_probs=10.4

Q ss_pred             cCeeeccCCcCcccchhhh
Q 048772          140 LRFLKLSWLRIKELPETCC  158 (333)
Q Consensus       140 L~~L~l~~~~i~~lp~~i~  158 (333)
                      |++|++++|.++.+|++++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.51  E-value=0.0011  Score=56.45  Aligned_cols=106  Identities=21%  Similarity=0.232  Sum_probs=64.2

Q ss_pred             hcccccCeeeccCCcCcccchhhhccccCcEEeccCCC-C-CCcCChhhhcCCCCCeeecccccccccCchh---hcCCC
Q 048772          135 KNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCT-R-LKRLPQGMEKLMNLRHLIIMNHVYLEYMPRG---IERLT  209 (333)
Q Consensus       135 ~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~-~-~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~---i~~L~  209 (333)
                      -....|.+|++.+..++++. .+-.|++|++|+++.|+ . ...++.-..++++|+++++++|. ++. +..   +.++.
T Consensus        40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~  116 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELE  116 (260)
T ss_pred             ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhc
Confidence            33555666666666544332 23367899999999852 2 23455555677999999999997 443 332   56777


Q ss_pred             CCCccceEEeCCCCCcccCcccchhhhcCcccccc
Q 048772          210 GLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRG  244 (333)
Q Consensus       210 ~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~  244 (333)
                      +|..|+++.|.... ..++....+.-+.+|+.|..
T Consensus       117 nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence            78888888776544 11122233444455554443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.74  E-value=0.00054  Score=57.45  Aligned_cols=84  Identities=17%  Similarity=0.148  Sum_probs=64.3

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN  186 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~  186 (333)
                      ..++...+|+++.+..     -.+...++.++.|..|+++.|.+..+|...+++..+..+++.. ++....|.+++++++
T Consensus        39 ~~~kr~tvld~~s~r~-----vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~  112 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRL-----VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPH  112 (326)
T ss_pred             hccceeeeehhhhhHH-----HhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCC
Confidence            3467777888888776     4555567777778888888888888888888888888887776 667788888888888


Q ss_pred             CCeeeccccc
Q 048772          187 LRHLIIMNHV  196 (333)
Q Consensus       187 L~~L~l~~~~  196 (333)
                      +++++..++.
T Consensus       113 ~k~~e~k~~~  122 (326)
T KOG0473|consen  113 PKKNEQKKTE  122 (326)
T ss_pred             cchhhhccCc
Confidence            8888877765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.72  E-value=0.0029  Score=54.57  Aligned_cols=81  Identities=22%  Similarity=0.216  Sum_probs=63.3

Q ss_pred             HhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc--hhhhccccCcEEeccCCCCCCcCCh---
Q 048772          105 VFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP--ETCCELINLETLEINRCTRLKRLPQ---  179 (333)
Q Consensus       105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~---  179 (333)
                      ++.+++.|++|.|+-|.+     +.+ ..+.+++.|+.|.|..|.|..+-  .-+.+|++|++|.|..|.....-+.   
T Consensus        36 ic~kMp~lEVLsLSvNkI-----ssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR  109 (388)
T KOG2123|consen   36 ICEKMPLLEVLSLSVNKI-----SSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR  109 (388)
T ss_pred             HHHhcccceeEEeecccc-----ccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence            456789999999999998     665 46889999999999999988775  3567899999999987544444332   


Q ss_pred             --hhhcCCCCCeee
Q 048772          180 --GMEKLMNLRHLI  191 (333)
Q Consensus       180 --~~~~L~~L~~L~  191 (333)
                        .+.-|+||+.||
T Consensus       110 ~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  110 RKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHcccchhcc
Confidence              255678888886

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.64  E-value=0.0054  Score=31.44  Aligned_cols=19  Identities=26%  Similarity=0.532  Sum_probs=8.9

Q ss_pred             CcEEeccCCCCCCcCChhhh
Q 048772          163 LETLEINRCTRLKRLPQGME  182 (333)
Q Consensus       163 L~~L~l~~~~~~~~lp~~~~  182 (333)
                      |++||+++| .++.+|.+|+
T Consensus         2 L~~Ldls~n-~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSS-EESEEGTTTT
T ss_pred             ccEEECCCC-cCEeCChhhc
Confidence            455555552 4445554433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.05  E-value=0.015  Score=27.73  Aligned_cols=16  Identities=50%  Similarity=0.650  Sum_probs=5.6

Q ss_pred             ccCeeeccCCcCcccc
Q 048772          139 HLRFLKLSWLRIKELP  154 (333)
Q Consensus       139 ~L~~L~l~~~~i~~lp  154 (333)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            3444455544444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.24  E-value=0.0028  Score=53.23  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=74.7

Q ss_pred             HhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCC
Q 048772          133 AMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLR  212 (333)
Q Consensus       133 ~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~  212 (333)
                      .+........||++.|++..+-..+..++.|..||++. +.+..+|..++.+..++++++.+|. ....|.+.++++.++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPK  114 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcc
Confidence            35556778899999999888888889999999999998 8899999999999999999998877 789999999999999


Q ss_pred             ccceEEe
Q 048772          213 TLSEFVV  219 (333)
Q Consensus       213 ~L~~~~~  219 (333)
                      .++.-.+
T Consensus       115 ~~e~k~~  121 (326)
T KOG0473|consen  115 KNEQKKT  121 (326)
T ss_pred             hhhhccC
Confidence            8886544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.29  E-value=0.049  Score=51.73  Aligned_cols=18  Identities=17%  Similarity=-0.105  Sum_probs=9.9

Q ss_pred             hhcCcccCCCCceEEEec
Q 048772          262 HVDLKEKKNLDRLELWFD  279 (333)
Q Consensus       262 ~~~l~~l~~L~~L~l~~~  279 (333)
                      ......+++|++|+++++
T Consensus       288 ~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  288 VSIAERCPSLRELDLSGC  305 (482)
T ss_pred             HHHHHhcCcccEEeeecC
Confidence            333444556666666655

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.27  E-value=0.12  Score=27.47  Aligned_cols=18  Identities=39%  Similarity=0.431  Sum_probs=9.4

Q ss_pred             cccCeeeccCCcCcccch
Q 048772          138 IHLRFLKLSWLRIKELPE  155 (333)
Q Consensus       138 ~~L~~L~l~~~~i~~lp~  155 (333)
                      ++|++|++++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            345555555555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.27  E-value=0.12  Score=27.47  Aligned_cols=18  Identities=39%  Similarity=0.431  Sum_probs=9.4

Q ss_pred             cccCeeeccCCcCcccch
Q 048772          138 IHLRFLKLSWLRIKELPE  155 (333)
Q Consensus       138 ~~L~~L~l~~~~i~~lp~  155 (333)
                      ++|++|++++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            345555555555555554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=91.38  E-value=0.12  Score=47.38  Aligned_cols=160  Identities=17%  Similarity=0.066  Sum_probs=91.6

Q ss_pred             hcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc-Ccccc--hhhhccccCcEEeccCCCCCCcCChh-h-h
Q 048772          108 QFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-IKELP--ETCCELINLETLEINRCTRLKRLPQG-M-E  182 (333)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~~-~-~  182 (333)
                      .+.-+-.+++..|..+  ++..+-..-..+..|++|+.+++. ++..+  .-..+..+|++|.+.+|..++..--. + .
T Consensus       266 ~~~~i~~lnl~~c~~l--TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r  343 (483)
T KOG4341|consen  266 YCLEILKLNLQHCNQL--TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR  343 (483)
T ss_pred             cChHhhccchhhhccc--cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence            3344555666666542  222222222446778888888775 33222  22345678999999988766543211 2 2


Q ss_pred             cCCCCCeeecccccccccC--chhhcCCCCCCccceEEeCCCCCcccCcccchhhhcC----cccccceeEEcccCCCCC
Q 048772          183 KLMNLRHLIIMNHVYLEYM--PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKG----MNHLRGLLKIRMLGDLAN  256 (333)
Q Consensus       183 ~L~~L~~L~l~~~~~l~~~--p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~----L~~L~~~L~~~~~~~~~~  256 (333)
                      +.+.|+.+++..|.....-  -.--.+.+.||.|++.++....      ...+..+..    +..|.. +.+.+   .+.
T Consensus       344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it------D~gi~~l~~~~c~~~~l~~-lEL~n---~p~  413 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT------DEGIRHLSSSSCSLEGLEV-LELDN---CPL  413 (483)
T ss_pred             CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhh------hhhhhhhhhccccccccce-eeecC---CCC
Confidence            4567888888877633222  1112367788888887665443      222222222    334443 44444   344


Q ss_pred             chhhhhhcCcccCCCCceEEEec
Q 048772          257 VDEAKHVDLKEKKNLDRLELWFD  279 (333)
Q Consensus       257 ~~~~~~~~l~~l~~L~~L~l~~~  279 (333)
                      ..++....+..+++|+.+++-.+
T Consensus       414 i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  414 ITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             chHHHHHHHhhCcccceeeeech
Confidence            56777778888899999888654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.78  E-value=0.32  Score=25.74  Aligned_cols=19  Identities=37%  Similarity=0.704  Sum_probs=10.7

Q ss_pred             ccCcEEeccCCCCCCcCChh
Q 048772          161 INLETLEINRCTRLKRLPQG  180 (333)
Q Consensus       161 ~~L~~L~l~~~~~~~~lp~~  180 (333)
                      ++|++|++++ +.+..+|..
T Consensus         2 ~~L~~L~L~~-N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSN-NQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCC-CcCCcCCHH
Confidence            4556666665 455555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.78  E-value=0.32  Score=25.74  Aligned_cols=19  Identities=37%  Similarity=0.704  Sum_probs=10.7

Q ss_pred             ccCcEEeccCCCCCCcCChh
Q 048772          161 INLETLEINRCTRLKRLPQG  180 (333)
Q Consensus       161 ~~L~~L~l~~~~~~~~lp~~  180 (333)
                      ++|++|++++ +.+..+|..
T Consensus         2 ~~L~~L~L~~-N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSN-NQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCC-CcCCcCCHH
Confidence            4556666665 455555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=88.56  E-value=0.3  Score=46.32  Aligned_cols=113  Identities=19%  Similarity=0.142  Sum_probs=49.6

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCC-c-Ccc----cchhhhccccCcEEeccCCCCCCcCC-h
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWL-R-IKE----LPETCCELINLETLEINRCTRLKRLP-Q  179 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~-~-i~~----lp~~i~~L~~L~~L~l~~~~~~~~lp-~  179 (333)
                      ..++.|+.|.+.++..+.  ...+-......++|+.|+++++ . +..    .+.....+.+|+.|++++|..+...- .
T Consensus       185 ~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKIT--DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             hhCchhhHhhhcccccCC--hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            345566666666554311  0112233455666666666552 1 111    11222334556666666644333211 1


Q ss_pred             hhh-cCCCCCeeecccccccccCc--hhhcCCCCCCccceEEeCC
Q 048772          180 GME-KLMNLRHLIIMNHVYLEYMP--RGIERLTGLRTLSEFVVGR  221 (333)
Q Consensus       180 ~~~-~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~  221 (333)
                      .+. .+++|++|.+.+|..++.-.  .....++.|++|++..+..
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            111 24566666655554322111  1123455566666655443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=88.20  E-value=0.66  Score=35.26  Aligned_cols=81  Identities=17%  Similarity=0.287  Sum_probs=35.0

Q ss_pred             HhhhcccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChh-h
Q 048772          105 VFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQG-M  181 (333)
Q Consensus       105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-~  181 (333)
                      .|.+++.|+.+.+.. .+     ..++. .+..+++|+.+.+..+ +..++ ..+.++..|+.+.+..  .+..++.. +
T Consensus         7 ~F~~~~~l~~i~~~~-~~-----~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F   77 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TI-----KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF   77 (129)
T ss_dssp             TTTT-TT--EEEETS-T-------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred             HHhCCCCCCEEEECC-Ce-----eEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccc
Confidence            445555666666553 23     33332 3455556666666553 55555 3445555666666653  23333332 3


Q ss_pred             hcCCCCCeeeccc
Q 048772          182 EKLMNLRHLIIMN  194 (333)
Q Consensus       182 ~~L~~L~~L~l~~  194 (333)
                      ..+++|+.+.+..
T Consensus        78 ~~~~~l~~i~~~~   90 (129)
T PF13306_consen   78 SNCTNLKNIDIPS   90 (129)
T ss_dssp             TT-TTECEEEETT
T ss_pred             cccccccccccCc
Confidence            4466666666644

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=87.92  E-value=0.78  Score=34.84  Aligned_cols=97  Identities=18%  Similarity=0.330  Sum_probs=51.7

Q ss_pred             hhHhhhcccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChh
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQG  180 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~  180 (333)
                      ...|..++.|+.+.+.++ +     ..++. .+..++.++.+.+.. .+..++ ..+..+.+|+.+++.. + +..++..
T Consensus        28 ~~~F~~~~~l~~i~~~~~-~-----~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~   98 (129)
T PF13306_consen   28 ENAFSNCTSLKSINFPNN-L-----TSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS-N-ITEIGSS   98 (129)
T ss_dssp             TTTTTT-TT-SEEEESST-T-----SCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT-T--BEEHTT
T ss_pred             hhhccccccccccccccc-c-----cccceeeeecccccccccccc-cccccccccccccccccccccCc-c-ccEEchh
Confidence            455778888999998875 5     44444 367777899999976 566666 4566789999999976 3 5666543


Q ss_pred             -hhcCCCCCeeecccccccccCchh-hcCCCCC
Q 048772          181 -MEKLMNLRHLIIMNHVYLEYMPRG-IERLTGL  211 (333)
Q Consensus       181 -~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L  211 (333)
                       +.+. +|+.+.+..+  +..++.. +.+.++|
T Consensus        99 ~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   99 SFSNC-NLKEINIPSN--ITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTTT--T--EEE-TTB---SS----GGG-----
T ss_pred             hhcCC-CceEEEECCC--ccEECCccccccccC
Confidence             5565 8888887653  4555543 5555444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=87.74  E-value=0.007  Score=57.49  Aligned_cols=175  Identities=18%  Similarity=0.130  Sum_probs=90.9

Q ss_pred             hhhhhHhhhcccccceEeeccccccccCCCcchHhhcc-cccCeeeccCCcCc-----ccchhhhccccCcEEeccCCCC
Q 048772          100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNL-IHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCTR  173 (333)
Q Consensus       100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l-~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~  173 (333)
                      ..+-..+....+|..|++++|.+-+.+...+-..+... ..+++|++..|.++     .++..+....+++.++++.|-.
T Consensus       105 ~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  105 EELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence            34455566777888888888877321111111122222 45667777777654     3455666677888888887332


Q ss_pred             CC----cCChhhh----cCCCCCeeecccccccccC-----chhhcCCCC-CCccceEEeCCCCCcccCcccchhhhcCc
Q 048772          174 LK----RLPQGME----KLMNLRHLIIMNHVYLEYM-----PRGIERLTG-LRTLSEFVVGRTGGEHASKVCKLEALKGM  239 (333)
Q Consensus       174 ~~----~lp~~~~----~L~~L~~L~l~~~~~l~~~-----p~~i~~L~~-L~~L~~~~~~~~~~~~~~~~~~~~~L~~L  239 (333)
                      ..    .++..+.    ...++++|++.+|. ++..     -..+...+. +..|++..+.....   ........+..+
T Consensus       185 ~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~---g~~~L~~~l~~~  260 (478)
T KOG4308|consen  185 IELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNKLGDV---GVEKLLPCLSVL  260 (478)
T ss_pred             chhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcCcchH---HHHHHHHHhccc
Confidence            11    1223333    36677778777776 2211     112344444 45566655554430   001112223333


Q ss_pred             -ccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEec
Q 048772          240 -NHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFD  279 (333)
Q Consensus       240 -~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  279 (333)
                       ..++. +++....-.......+...+..+++++.|.+..|
T Consensus       261 ~~~l~~-l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n  300 (478)
T KOG4308|consen  261 SETLRV-LDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN  300 (478)
T ss_pred             chhhhh-hhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence             34444 5555444334444556666666777777777755

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.84  E-value=0.2  Score=41.48  Aligned_cols=80  Identities=15%  Similarity=0.125  Sum_probs=45.1

Q ss_pred             ccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCC-hhhh-cCCCCCeeecccccccccCc-hhhcCCCCCCcc
Q 048772          139 HLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLP-QGME-KLMNLRHLIIMNHVYLEYMP-RGIERLTGLRTL  214 (333)
Q Consensus       139 ~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp-~~~~-~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L  214 (333)
                      .++..|-+++.|... -+.+.+++.++.|.+.+|..+...- +.++ -.++|+.|++++|..+++-- ..+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            456677777766533 2556677777777777766554321 1122 23567777777776555432 225555555555


Q ss_pred             ceEE
Q 048772          215 SEFV  218 (333)
Q Consensus       215 ~~~~  218 (333)
                      .+++
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.48  E-value=0.22  Score=41.24  Aligned_cols=88  Identities=18%  Similarity=0.218  Sum_probs=52.2

Q ss_pred             ccCcEEeccCCCCCCcC-ChhhhcCCCCCeeecccccccccCc-hhhc-CCCCCCccceEEeCCCCCcccCcccchhhhc
Q 048772          161 INLETLEINRCTRLKRL-PQGMEKLMNLRHLIIMNHVYLEYMP-RGIE-RLTGLRTLSEFVVGRTGGEHASKVCKLEALK  237 (333)
Q Consensus       161 ~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~l~~~~~l~~~p-~~i~-~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~  237 (333)
                      ..++.+|.++ +.|... -+.+.+++.++.|.+.+|..+..-- ..++ -.++|+.|++.+|...+      ...+.-|.
T Consensus       101 ~~IeaVDAsd-s~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT------~~GL~~L~  173 (221)
T KOG3864|consen  101 VKIEAVDASD-SSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT------DGGLACLL  173 (221)
T ss_pred             ceEEEEecCC-chHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec------hhHHHHHH
Confidence            3467778777 333321 1235566677777777776433221 1122 24577888887776555      56677777


Q ss_pred             CcccccceeEEcccCCCCC
Q 048772          238 GMNHLRGLLKIRMLGDLAN  256 (333)
Q Consensus       238 ~L~~L~~~L~~~~~~~~~~  256 (333)
                      .+++|+. |.+..+..|.+
T Consensus       174 ~lknLr~-L~l~~l~~v~~  191 (221)
T KOG3864|consen  174 KLKNLRR-LHLYDLPYVAN  191 (221)
T ss_pred             HhhhhHH-HHhcCchhhhc
Confidence            7777776 77776655443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.51  E-value=0.92  Score=24.17  Aligned_cols=17  Identities=35%  Similarity=0.483  Sum_probs=10.4

Q ss_pred             ccCeeeccCCcCcccch
Q 048772          139 HLRFLKLSWLRIKELPE  155 (333)
Q Consensus       139 ~L~~L~l~~~~i~~lp~  155 (333)
                      +|++|+.++|+++++|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45666666666666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	333
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	5e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.8 bits (182), Expect = 4e-15
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%)

Query: 91  QIKGIPQE--KKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWL 148
           ++  +P+     +     +    L++LR+    +       +P ++ NL +L+ LK+   
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-----RSLPASIANLQNLKSLKIRNS 216

Query: 149 RIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERL 208
            +  L      L  LE L++  CT L+  P        L+ LI+ +   L  +P  I RL
Sbjct: 217 PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 209 TGLRTLS 215
           T L  L 
Sbjct: 277 TQLEKLD 283

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 128 SKIPKAMKNLIHLRFLKLSWL-RIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN 186
           S +  A+ +L  L  L L     ++  P        L+ L +  C+ L  LP  + +L  
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 187 LRHLIIMNHVYLEYMPRGIERLTGLRTL 214
           L  L +   V L  +P  I +L     +
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 19/127 (14%)

Query: 100 KELEDVFKQFTCLRALRICGENVWEIGNS--KIPKAMKNLIHLRFLKLSWLRIKELPETC 157
            +  D   + + L+ + I             ++P  M+    L  L L+   ++ LP + 
Sbjct: 94  PQFPDQAFRLSHLQHMTIDA-------AGLMELPDTMQQFAGLETLTLARNPLRALPASI 146

Query: 158 CELINLETLEINRCTRLKRLP---------QGMEKLMNLRHLIIMNHVYLEYMPRGIERL 208
             L  L  L I  C  L  LP            + L+NL+ L +     +  +P  I  L
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANL 205

Query: 209 TGLRTLS 215
             L++L 
Sbjct: 206 QNLKSLK 212

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187
            + P     L HL+ + +    + ELP+T  +   LETL + R   L+ LP  +  L  L
Sbjct: 94  PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRL 152

Query: 188 RHLIIMNHVYLEYMPRGIERLTGLRTLSE 216
           R L I     L  +P  +           
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQG 181

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 12/107 (11%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWL-R 149
            +  +                L  L + G           P        L+ L L     
Sbjct: 217 PLSALGPA-------IHHLPKLEELDLRGCT----ALRNYPPIFGGRAPLKRLILKDCSN 265

Query: 150 IKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHV 196
           +  LP     L  LE L++  C  L RLP  + +L     +++  H+
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 19/133 (14%)

Query: 100 KELEDVFKQFTCLRALRICG-ENVWEIGNS--------------KIPKAMKNLIH--LRF 142
           +   DV  Q+            + W   NS                   +++        
Sbjct: 26  RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVA 85

Query: 143 LKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMP 202
           L+L  + + + P+    L +L+ + I+    L  LP  M++   L  L  +    L  +P
Sbjct: 86  LELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETL-TLARNPLRALP 143

Query: 203 RGIERLTGLRTLS 215
             I  L  LR LS
Sbjct: 144 ASIASLNRLRELS 156

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 3e-09
 Identities = 51/353 (14%), Positives = 100/353 (28%), Gaps = 86/353 (24%)

Query: 22  VERVRRVTAVKAEVDKLTSNL--------------LAIKAVLSDAEQKQVKEKGIRHWLD 67
           V R++    ++  + +L                  +A+  V    + +   +  I  WL+
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-DVCLSYKVQCKMDFKI-FWLN 188

Query: 68  QLKEASCDMEDVFDEWITASRRL---------QIKGIPQEKKELEDVFKQF-------TC 111
            LK  +   E V +       ++             I      ++   ++         C
Sbjct: 189 -LKNCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 112 LRALRICGENVWEIGNSKIPKAM----KNLIHLR------FLKLSWLRIKELPETCCELI 161
           L  L     NV    N+K   A     K L+  R      FL  +      L      L 
Sbjct: 247 LLVLL----NVQ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 162 NLETLEI-NRC--TRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFV 218
             E   +  +    R + LP+ +      R  II      E +  G+      + ++   
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-----ESIRDGLATWDNWKHVNCDK 354

Query: 219 VGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLE-LW 277
           +         +   L  L+     R +        L+         +        L  +W
Sbjct: 355 L-----TTIIESS-LNVLEP-AEYRKMFD-----RLSVFPP--SAHIPTI----LLSLIW 396

Query: 278 FDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN 330
           FD +      + +   +    K  +  L+         S   I++  K  + N
Sbjct: 397 FDVI------KSDVMVVVN--KLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 6e-09
 Identities = 59/399 (14%), Positives = 114/399 (28%), Gaps = 115/399 (28%)

Query: 5   VVSVVLDQLISSAFEEAVERVRRVTAVKAEVDKL------TSNLLAIKAVLSDAEQKQVK 58
           ++SV  D  + +   + V+ + +    K E+D +       S  L +   L   +++ V+
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 59  ---EKGIR---HWL-DQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKE---LEDVFKQ 108
              E+ +R    +L   +K        +   +I    RL        K     L+   K 
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 109 FTCLRALRI-----------CGENVWEIG---NSKIPKAMKNLIHLRFLKLSWLRIKELP 154
              L  LR             G+    +    + K+   M   I        WL +K   
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-------WLNLKNCN 193

Query: 155 ETCCELINLETL-------EINRCTRLKRLPQGMEKLMN-LRH----------LIIMNHV 196
                L  L+ L         +R      +   +  +   LR           L+++ +V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 197 Y----LEYMPRG------------IERLTGLRTLSEFVVGRTGGEHASKVCKL------- 233
                                    + L+   T    +   +      +V  L       
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 234 -------EALKGMNHLRGLLKIRMLG-----DLANVDEAKHVDLKEKKN-----LDRLEL 276
                  E L          ++ ++       LA  D  KHV+  +        L+ LE 
Sbjct: 314 RPQDLPREVLTTN-----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE- 367

Query: 277 WFDNVGMPDENEEN--DEAI----TKIAKSVRVCLLWDN 309
                  P E  +     ++      I   + + L+W +
Sbjct: 368 -------PAEYRKMFDRLSVFPPSAHIPTIL-LSLIWFD 398

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 54/363 (14%), Positives = 100/363 (27%), Gaps = 108/363 (29%)

Query: 46  KAVLSDAEQKQVKEKGIRHWLDQLKEASCDMEDVFDEWITASRRLQIKGIPQEKKELEDV 105
           K +LS  E   V     +   D  K      E              I  I   K  +   
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEE--------------IDHIIMSKDAVSGT 64

Query: 106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWL--RIKELPETCCELINL 163
            + F  L                 + K ++ ++ + +    +L   IK        +  +
Sbjct: 65  LRLFWTLL----------SKQEEMVQKFVEEVLRINY---KFLMSPIKTEQRQPSMMTRM 111

Query: 164 ETLEINRC------------TRLKRLPQGMEKLMNLRH---LII--M------------- 193
              + +R             +RL+   +  + L+ LR    ++I  +             
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 194 -NHVYLEYMPRGI------------ERLTGLRTL-SEFVVGRTGGEHASKVCKLEALKGM 239
            ++     M   I              L  L+ L  +     T     S   KL      
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 240 NHLRGLLKIRM----LGDLANVDEAKHVDL-----------KEKKNLDRLELWFDNVGMP 284
             LR LLK +     L  L NV  AK  +            + K+  D L          
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA---ATTTH 288

Query: 285 DENEENDEAITKIAKSVRVCLLWDNC------------HPLKYSRYGIWIVWKEWVM--N 330
              + +   +T   +   + L + +C            +P + S   I    ++ +   +
Sbjct: 289 ISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--IIAESIRDGLATWD 345

Query: 331 FWE 333
            W+
Sbjct: 346 NWK 348

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} Length = 115

 Score = 49.4 bits (118), Expect = 5e-08
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 4  AVVSVVLDQLISSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQKQVKE--KG 61
          A +S ++ +L     EE     +    VK  ++ L   L ++ A L    +   ++    
Sbjct: 1  AAISNLIPKLGELLTEEF----KLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQ 56

Query: 62 IRHWLDQLKEASCDMEDVFDEWI 84
           + W D+++E S  +EDV D+++
Sbjct: 57 DKLWADEVRELSYVIEDVVDKFL 79

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRI 150
            I+ I          F     L  L +    +  I       A   L  L+ L L    I
Sbjct: 99  HIRTIE------IGAFNGLANLNTLELFDNRLTTIP----NGAFVYLSKLKELWLRNNPI 148

Query: 151 KELPETC-CELINLETLEINRCTRLKRLPQGM-EKLMNLRHLII-MNHVYLEYMPRGIER 207
           + +P      + +L  L++    RL  + +G  E L NLR+L + M +  L  +P  +  
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN--LREIP-NLTP 205

Query: 208 LTGLRTLS 215
           L  L  L 
Sbjct: 206 LIKLDELD 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 17/128 (13%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRI 150
           ++  I       E  F+  + LR L +   N+      +IP  +  LI L  L LS   +
Sbjct: 172 RLSYIS------EGAFEGLSNLRYLNLAMCNL-----REIP-NLTPLIKLDELDLSGNHL 219

Query: 151 KELPETC-CELINLETLEINRCTRLKRLPQGM-EKLMNLRHLIIMNHVYLEYMPRGI-ER 207
             +       L++L+ L + +  +++ + +   + L +L  +  + H  L  +P  +   
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEI-NLAHNNLTLLPHDLFTP 277

Query: 208 LTGLRTLS 215
           L  L  + 
Sbjct: 278 LHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 131 PKAMKNLIHLRFLKLSWLRIKELPETC-CELINLETLEINRCTRLKRLPQGM-EKLMNLR 188
             + K+L HL  L+LS   I+ +       L NL TLE+    RL  +P G    L  L+
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLK 139

Query: 189 HLII-MNHVYLEYMPRGI-ERLTGLRTL 214
            L +  N   +E +P     R+  LR L
Sbjct: 140 ELWLRNNP--IESIPSYAFNRIPSLRRL 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 128 SKIPK-AMKNLIHLRFLKLSWLRIKELPETCCE-LINLETLEINRCTRLKRLPQGMEKLM 185
           + IP  A+ +L  L  L+L  L I  + +   + L  L+ LEI+    L  +       +
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 186 NLRHLIIMNHVYLEYMPRG-IERLTGLRTLS 215
           NL  L I  H  L  +P   +  L  LR L+
Sbjct: 225 NLTSLSI-THCNLTAVPYLAVRHLVYLRFLN 254

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 15/127 (11%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRI 150
           +IK +       +D F  F  L  L +    V  +     P A  NL +LR L L   R+
Sbjct: 43  RIKTLN------QDEFASFPHLEELELNENIVSAVE----PGAFNNLFNLRTLGLRSNRL 92

Query: 151 KELPETCCE-LINLETLEINRCTRLKRLPQGM-EKLMNLRHLIIMNHVYLEYMPRGI-ER 207
           K +P      L NL  L+I+   ++  L   M + L NL+ L  +    L Y+       
Sbjct: 93  KLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSL-EVGDNDLVYISHRAFSG 150

Query: 208 LTGLRTL 214
           L  L  L
Sbjct: 151 LNSLEQL 157

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 17/130 (13%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLR 149
           +++ +P        VF + T L  L +   N   +       ++      L++L LS+  
Sbjct: 39  KLQSLPH------GVFDKLTQLTKLSL-SSN--GLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 150 IKELPETCCELINLETLEINRCTRLKRLPQGM--EKLMNLRHLII-MNHVYLEYMPRGI- 205
           +  +      L  LE L+      LK++ +      L NL +L I   H        GI 
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIF 146

Query: 206 ERLTGLRTLS 215
             L+ L  L 
Sbjct: 147 NGLSSLEVLK 156

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 130 IPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGM-EKLMNLR 188
                     L+ L L+   + ELP     L  L+ L ++   + + L Q       +L 
Sbjct: 270 SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLT 328

Query: 189 HLIIM-NHVYLEYMPRGIERLTGLRTL 214
           HL I  N   LE     +E L  LR L
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLREL 355

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 130 IPKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQGM-EKLMNL 187
                  LI+L FL L+  +I  +  +T      L+TL +     L  + +        L
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKAL 107

Query: 188 RHLIIMNHVYLEYMPRG-IERLTGLRTLS 215
           +HL       +  +    +     L +L 
Sbjct: 108 KHL-FFIQTGISSIDFIPLHNQKTLESLY 135

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 14/126 (11%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRI 150
               I        + F  F+ L+ L +   ++     S++P  +  L  L+ L LS  + 
Sbjct: 265 YFFNIS------SNTFHCFSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKF 313

Query: 151 KELPE-TCCELINLETLEINRCTRLKRLPQGM-EKLMNLRHLIIMNHVYLEYMPRGIERL 208
           + L + +     +L  L I   T+   L  G  E L NLR L  ++H  +E       +L
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL-DLSHDDIETSDCCNLQL 372

Query: 209 TGLRTL 214
             L  L
Sbjct: 373 RNLSHL 378

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 130 IPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQG-MEKLMNL 187
               + N   L  L L    I  +          L+ L+      +  L +  M  L   
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQA 179

Query: 188 RHLII-MNHVYLEYMPRGIERLTGLRTLS 215
            +L + +N   +  +  G       ++L+
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 11/125 (8%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRI 150
           Q+K +     ++ ++  Q   L+ L I  +N   +   +          L  L +S   +
Sbjct: 359 QLKELS----KIAEMTTQMKSLQQLDIS-QN--SVSYDEKKGDCSWTKSLLSLNMSSNIL 411

Query: 151 KELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGI-ERLT 209
            +    C     ++ L+++   ++K +P+ + KL  L+ L  +    L+ +P GI +RLT
Sbjct: 412 TDTIFRC-LPPRIKVLDLHSN-KIKSIPKQVVKLEALQEL-NVASNQLKSVPDGIFDRLT 468

Query: 210 GLRTL 214
            L+ +
Sbjct: 469 SLQKI 473

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 131 PKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQGMEKLMNLRH 189
              + +L  LR L +S  RI+ L          LE L+++   +L ++       +NL+H
Sbjct: 38  TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-NKLVKISCH--PTVNLKH 94

Query: 190 LIIMNHVYLEYMPRG--IERLTGLRTLS 215
           L +  +   + +P       ++ L+ L 
Sbjct: 95  LDLSFN-AFDALPICKEFGNMSQLKFLG 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 131 PKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQGM-EKLMNLR 188
           P A      LR + LS  +I EL       L +L +L +    ++  LP+ + E L +L+
Sbjct: 49  PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQ 107

Query: 189 HLIIMNHVYLEYMPRGI-ERLTGLRTLS 215
            L ++N   +  +     + L  L  LS
Sbjct: 108 LL-LLNANKINCLRVDAFQDLHNLNLLS 134

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 23/133 (17%)

Query: 87  SRRLQI--KGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLK 144
           S+R      GIP   + L     Q T L                  P    +LI+L+ L 
Sbjct: 28  SKRHASVPAGIPTNAQILYLHDNQITKLE-----------------PGVFDSLINLKELY 70

Query: 145 LSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQGM-EKLMNLRHLIIMNHVYLEYMP 202
           L   ++  LP      L  L  L++    +L  LP  + ++L++L+ L  M    L  +P
Sbjct: 71  LGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLKELF-MCCNKLTELP 128

Query: 203 RGIERLTGLRTLS 215
           RGIERLT L  L+
Sbjct: 129 RGIERLTHLTHLA 141

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 22/125 (17%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGN--SKIPKAMKNLIHLRFLKLSWL 148
           +++ I          F +   L  L I         N    +    + +  L+ L LS  
Sbjct: 259 ELEKIM------YHPFVKMQRLERLYI-------SNNRLVALNLYGQPIPTLKVLDLSHN 305

Query: 149 RIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLII----MNHVYLEYMPRG 204
            +  +     +   LE L ++    +  L         L++L +     +   L  + R 
Sbjct: 306 HLLHVERNQPQFDRLENLYLDHN-SIVTLKLST--HHTLKNLTLSHNDWDCNSLRALFRN 362

Query: 205 IERLT 209
           + R  
Sbjct: 363 VARPA 367

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 133 AMKNLIHLRFLKLSWLRIKELPETCCE-LINLETLEINRCTRLKRLPQGMEKLMNLRHLI 191
            + N   L  + LS+  ++++       +  LE L I+   RL  L    + +  L+ L 
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVL- 300

Query: 192 IMNHVYLEYMPRGIERLTGLRTLS 215
            ++H +L ++ R   +   L  L 
Sbjct: 301 DLSHNHLLHVERNQPQFDRLENLY 324

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 128 SKIPK-AMKNLIHLRFLKLSWLRIKELPETC-CELINLETLEINRCTRLKRLPQGM-EKL 184
            K+P   + +   +  L L+ L+I+E+          ++ L +     ++ LP  + + +
Sbjct: 58  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV 116

Query: 185 MNLRHLIIMNHVYLEYMPRGI-ERLTGLRTLS 215
             L  L++     L  +PRGI      L TLS
Sbjct: 117 PLLTVLVL-ERNDLSSLPRGIFHNTPKLTTLS 147

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 29/117 (24%)

Query: 128 SKIPKAMKNLIHLRFLKLS--------------------WLRIKELPETCCELINLETLE 167
           + I KA++ L  L+ +  +                      + +    +   L +L  +E
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 168 INRCTRLKRLPQGMEKLMNLRHL---------IIMNHVYLEYMPRGIERLTGLRTLS 215
           +  C  + +LP  +  L  L+ L                   +    +    ++   
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 21/135 (15%)

Query: 130 IPKAMKNLIHLRFLKLSWLRIKELPETCCE--------LINLETLEINRCTRLKRLPQGM 181
             +       +  + LS   +  +PE   +           L T+++    +L  L    
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDF 747

Query: 182 E--KLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLS-----EFVVGRTGGEHASKVCKLE 234
               L  L ++ + ++      P      + L+        +    R   +  + +    
Sbjct: 748 RATTLPYLSNMDV-SYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 235 ALK----GMNHLRGL 245
           +L     G N +R +
Sbjct: 807 SLIQLQIGSNDIRKV 821

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 27/138 (19%)

Query: 91  QIKGIPQEK-KELEDVFKQFTCLRALRICGENVWEIGN--SKIPKAMK--NLIHLRFLKL 145
            +  IP+   K  +  +K    L  + +         N  + +    +   L +L  + +
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRF-------NKLTSLSDDFRATTLPYLSNMDV 760

Query: 146 SWLRIKELPETCCELINLETLEI--------NRCTRLKRLPQGMEKLMNLRHLII-MNHV 196
           S+      P        L+   I        NR   L++ P G+    +L  L I  N  
Sbjct: 761 SYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI--LRQWPTGITTCPSLIQLQIGSND- 817

Query: 197 YLEYMPRGIERLTGLRTL 214
            +  +   +     L  L
Sbjct: 818 -IRKVDEKL--TPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 127 NSKIPKAMKNLIHLRFLKLS-WLRIKELPETCCELINLETLEI--NR-------CTRLKR 176
                 +  NL  L  ++L     + +LP+   +L  L++L I  NR            R
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 177 LPQGMEKLMNLRHLIIM-NHVYLEYMP--RGIERLTGLRTLS 215
           L    +    ++   +  N+  LE  P    ++++  L  L 
Sbjct: 540 LADDEDTGPKIQIFYMGYNN--LEEFPASASLQKMVKLGLLD 579

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 18/164 (10%), Positives = 53/164 (32%), Gaps = 24/164 (14%)

Query: 101 ELEDVFKQFTCLRAL-----RICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE 155
           +L D       L++L     R       +   +++         ++   + +  ++E P 
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565

Query: 156 TC--CELINLETLEINRCTRLKRLPQGMEKLMNLRHLII-MNHVYLEYMPRGIERLTGLR 212
           +    +++ L  L+     +++ L       + L  L +  N   +E +P          
Sbjct: 566 SASLQKMVKLGLLDCVHN-KVRHLEA-FGTNVKLTDLKLDYNQ--IEEIPEDF--CAFTD 619

Query: 213 TLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLAN 256
            +                 KL+ +  + + + +  +  + D + 
Sbjct: 620 QVEGLGFSH---------NKLKYIPNIFNAKSVYVMGSV-DFSY 653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 22/125 (17%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGN--SKIPKAMKNLIHLRFLKLSWL 148
           +++ I          F +   L  L I         N    +    + +  L+ L LS  
Sbjct: 265 ELEKIM------YHPFVKMQRLERLYI-------SNNRLVALNLYGQPIPTLKVLDLSHN 311

Query: 149 RIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLII----MNHVYLEYMPRG 204
            +  +     +   LE L ++    +  L         L++L +     +   L  + R 
Sbjct: 312 HLLHVERNQPQFDRLENLYLDHN-SIVTLKLST--HHTLKNLTLSHNDWDCNSLRALFRN 368

Query: 205 IERLT 209
           + R  
Sbjct: 369 VARPA 373

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 133 AMKNLIHLRFLKLSWLRIKELPETCCE-LINLETLEINRCTRLKRLPQGMEKLMNLRHLI 191
            + N   L  + LS+  ++++       +  LE L I+   RL  L    + +  L+ L 
Sbjct: 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVL- 306

Query: 192 IMNHVYLEYMPRGIERLTGLRTLS 215
            ++H +L ++ R   +   L  L 
Sbjct: 307 DLSHNHLLHVERNQPQFDRLENLY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 128 SKIPK-AMKNLIHLRFLKLSWLRIKELPETC-CELINLETLEINRCTRLKRLPQGM-EKL 184
            K+P   + +   +  L L+ L+I+E+          ++ L +     ++ LP  + + +
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV 122

Query: 185 MNLRHLIIMNHVYLEYMPRGI-ERLTGLRTLS 215
             L  L ++    L  +PRGI      L TLS
Sbjct: 123 PLLTVL-VLERNDLSSLPRGIFHNTPKLTTLS 153

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 131 PKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG--MEKLMNLR 188
            ++      L++L LS+  +  +      L  LE L+      LK++ +      L NL 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLI 424

Query: 189 HLIIMNHVYLEYMPRGI-ERLTGLRTLS 215
           +L I +H +      GI   L+ L  L 
Sbjct: 425 YLDI-SHTHTRVAFNGIFNGLSSLEVLK 451

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 10/116 (8%)

Query: 104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETC--CELI 161
                 T L+ L     N    G   +      L  L  L      +K++ E      L 
Sbjct: 367 QSDFGTTSLKYLD-LSFN----GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 162 NLETLEINRCTRLKRLPQGM-EKLMNLRHLII-MNHVYLEYMPRGIERLTGLRTLS 215
           NL  L+I+     +    G+   L +L  L +  N     ++P     L  L  L 
Sbjct: 422 NLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 131 PKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQGM-EKLMNLR 188
             +  +   L+ L LS   I+ +       L +L TL +     ++ L  G    L +L+
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQ 103

Query: 189 HLIIMNHVYLEYMPRG-IERLTGLRTLS 215
            L +     L  +    I  L  L+ L+
Sbjct: 104 KL-VAVETNLASLENFPIGHLKTLKELN 130

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 137 LIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHV 196
              L  L +   ++  LPE      +LE L+++    L+ LP    +  +     I    
Sbjct: 159 PTSLEVLSVRNNQLTFLPE---LPESLEALDVST-NLLESLPAVPVRNHHSEETEIFFRC 214

Query: 197 Y---LEYMPRGIERLTGLRTLS 215
               + ++P  I  L    T+ 
Sbjct: 215 RENRITHIPENILSLDPTCTII 236

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEIN---RCTRLKRLPQGMEKL 184
           + +P+  ++L     L +S   ++ LP       + E  EI    R  R+  +P+ +  L
Sbjct: 173 TFLPELPESL---EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL 229

Query: 185 MNLRHLIIMN 194
                +I+ +
Sbjct: 230 DPTCTIILED 239

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 131 PKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQGM-EKLMNLR 188
              ++   +L+ L L   RI  +  +    L +LE L+++    L  L       L +L+
Sbjct: 43  HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLK 101

Query: 189 HLIIMNHVYLEYMPRG-IERLTGLRTLS 215
           +L +M + Y           LT L+TL 
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 16/107 (14%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 105 VFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLE 164
               +  L+ L +   ++  +   K  + +  L +L  L +S      +P++C     + 
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSM--QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413

Query: 165 TLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGL 211
            L ++    ++ +   +     L  L  +++  L+     + RL  L
Sbjct: 414 FLNLSST-GIRVVKTCI--PQTLEVL-DVSNNNLDSFSLFLPRLQEL 456

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 23/136 (16%)

Query: 91  QIKGIPQEK-KELEDVFKQFTCLRALRICGENVWEIGN--SKIPK--AMKNLIHLRFLKL 145
            +  IP+   K+  + FK    L ++ +         N  +K+        L +L  + L
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRF-------NKLTKLSDDFRATTLPYLVGIDL 520

Query: 146 SWLRIKELPETCCELINLETLEINRCTRLKR------LPQGMEKLMNLRHLII-MNHVYL 198
           S+    + P        L+   I      +        P+G+    +L  L I  N   +
Sbjct: 521 SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND--I 578

Query: 199 EYMPRGIERLTGLRTL 214
             +   I     +  L
Sbjct: 579 RKVNEKI--TPNISVL 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 12/109 (11%), Positives = 30/109 (27%), Gaps = 19/109 (17%)

Query: 126 GNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETL------------------- 166
               I K+ +  +    +      I  + +    L  L                      
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230

Query: 167 EINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLS 215
                 + K      + L +L  + + N   L  +P  ++ L  ++ ++
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 130 IPKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQGM-EKLMNL 187
              +  +   L+ L LS   I+ +       L +L TL +     ++ L  G    L +L
Sbjct: 44  GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL 102

Query: 188 RHLIIMNHVYLEYM-PRGIERLTGLRTLS 215
           + L +     L  +    I  L  L+ L+
Sbjct: 103 QKL-VAVETNLASLENFPIGHLKTLKELN 130

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 9/90 (10%)

Query: 130 IPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEI--NRCTRLKRLPQGM-EKLMN 186
             ++      L++L LS+  +  +      L  LE L+   +   ++      +   L N
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRN 422

Query: 187 LRHLII-MNHVYLEYMPRG-IERLTGLRTL 214
           L +L I   H        G    L+ L  L
Sbjct: 423 LIYLDISHTH--TRVAFNGIFNGLSSLEVL 450

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 20/134 (14%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLR 149
           +I  +           K    L  L +   ++     S +   ++ N  HLR L L+  +
Sbjct: 203 KITKVD------AASLKGLNNLAKLGLSFNSI-----SAVDNGSLANTPHLRELHLNNNK 251

Query: 150 IKELPETCCELINLETLEI--NRCTRLK----RLPQGMEKLMNLRHLIIM-NHVYLEYMP 202
           + ++P    +   ++ + +  N  + +       P    K  +   + +  N V    + 
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 203 RGI-ERLTGLRTLS 215
                 +     + 
Sbjct: 312 PSTFRCVYVRAAVQ 325

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 24/132 (18%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI----PKAMKNLIHLRFLKLS 146
           +I  I       +  FK    L  L +         N+KI    P A   L+ L  L LS
Sbjct: 63  KITEIK------DGDFKNLKNLHTLIL--------INNKISKISPGAFAPLVKLERLYLS 108

Query: 147 WLRIKELPETCCELINLETLEINRCTRLKRLPQGM-EKLMNLRHLII-MNHVYLEYMPRG 204
             ++KELPE       L+ L ++    + ++ + +   L  +  + +  N +    +  G
Sbjct: 109 KNQLKELPEKM--PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 205 I-ERLTGLRTLS 215
             + +  L  + 
Sbjct: 166 AFQGMKKLSYIR 177

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 16/128 (12%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLR 149
           +I  +       + VF     +  + + G N   + +S I   A + +  L +++++   
Sbjct: 132 EITKVR------KSVFNGLNQMIVVEL-GTN--PLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 150 IKELPETCCELINLETLEINRCTRLKRLPQGM-EKLMNLRHLIIMNHVYLEYMPRGI-ER 207
           I  +P+      +L  L ++   ++ ++     + L NL  L  ++   +  +  G    
Sbjct: 183 ITTIPQGL--PPSLTELHLDGN-KITKVDAASLKGLNNLAKL-GLSFNSISAVDNGSLAN 238

Query: 208 LTGLRTLS 215
              LR L 
Sbjct: 239 TPHLRELH 246

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 7/154 (4%)

Query: 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELI 161
           L ++ +  T L  L        +I    +    +N   L  +K+    I EL        
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243

Query: 162 NLETLEINRCTRLKRLPQGMEKLMNLRHLIIMN--HVYLEYMPRGIERLTGLRTLS---E 216
           NLE            +P+    L+  R L  +   ++    MP        +R L     
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303

Query: 217 FVVGRTGGEHASKVCKLEALKGMNHL--RGLLKI 248
            +          K   LE L+  N +  RGL  +
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL 337

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 22/203 (10%)

Query: 101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRI--KELPETCC 158
           ++    K    +   ++C   +  +G +++P        +R L L +  +  ++      
Sbjct: 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315

Query: 159 ELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLT--GLRTLSE 216
           +  NLE LE       + L    +    L+ L I      + M      ++  GL  L++
Sbjct: 316 KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375

Query: 217 FV------------VGRTGGEHASKVCK-LEALKGMNHLRGLLKIRMLGDLANVDEAKHV 263
                         +     E      K L   +    L  L +   + DL  +D     
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFR----LVLLDREERITDLP-LDNGVRS 430

Query: 264 DLKEKKNLDRLELWFDNVGMPDE 286
            L   K L R   +    G+ D 
Sbjct: 431 LLIGCKKLRRFAFYLRQGGLTDL 453

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 130 IPKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQGM-EKLMNL 187
              +  N   L++L LS   I+ +  +    L +L  L +     ++    G    L +L
Sbjct: 48  KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSL 106

Query: 188 RHLIIMNHVYLEYMPRG-IERLTGLRTLS 215
            +L +     L  +    I +L  L+ L+
Sbjct: 107 ENL-VAVETKLASLESFPIGQLITLKKLN 134

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 102 LEDVFKQFTCLRALRI--CGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCC 158
              +   F  L  L+      +   +       A  +L  L +L +S+   K        
Sbjct: 388 AIIMSANFMGLEELQHLDFQHS--TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 159 ELINLETLEINRCTRLKRLPQGM-EKLMNLRHLIIMNHVYLEYMPRGI-ERLTGLRTLS 215
            L +L TL++   +        +     NL  L + +   LE +  G+ + L  L+ L+
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL-SKCQLEQISWGVFDTLHRLQLLN 503

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 19/102 (18%)

Query: 128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKL--- 184
           + +P     L  L    +S  ++  LP     L+ L     N  T L  LP G+ KL   
Sbjct: 74  TSLPALPPELRTLE---VSGNQLTSLPVLPPGLLELSIFS-NPLTHLPALPSGLCKLWIF 129

Query: 185 -----------MNLRHLIIMNHVYLEYMPRGIERLTGLRTLS 215
                        L+ L  ++   L  +P     L  L   +
Sbjct: 130 GNQLTSLPVLPPGLQEL-SVSDNQLASLPALPSELCKLWAYN 170

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 139 HLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYL 198
           H+  L +    +  LP        L TLE++   +L  LP     L+ L         +L
Sbjct: 62  HITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPVLPPGLLELSIFSN-PLTHL 116

Query: 199 EYMPRGIERLT 209
             +P G+ +L 
Sbjct: 117 PALPSGLCKLW 127

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 30/228 (13%)

Query: 102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-------IKELP 154
           L  +      L+ L +   +V ++    +         L  L +S L        ++ L 
Sbjct: 148 LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207

Query: 155 ETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHL------IIMNHVYLEYMPRGIERL 208
             C    NL++L++NR   L++L   +++   L  L        +       +   +   
Sbjct: 208 TRC---PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264

Query: 209 TGLRTLSEFV-VGRTGGEHASKVCK-LEALK----------GMNHLRGLLKIRMLGDLAN 256
             LR LS F             VC  L  L            +  L    K++ L  L  
Sbjct: 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324

Query: 257 V-DEAKHVDLKEKKNLDRLELWFDNVGMPDENEE-NDEAITKIAKSVR 302
           + D    V     K+L  L ++     + + N    ++ +  ++    
Sbjct: 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 25/133 (18%)

Query: 87  SRRLQI--KGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLK 144
           ++ L++  KGIP++  EL     QFT                   +PK + N  HL  + 
Sbjct: 19  NKGLKVLPKGIPRDVTELYLDGNQFT------------------LVPKELSNYKHLTLID 60

Query: 145 LSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQGM-EKLMNLRHLIIMNHVYLEYMP 202
           LS  RI  L   +   +  L TL ++   RL+ +P    + L +LR L +  +  +  +P
Sbjct: 61  LSNNRISTLSNQSFSNMTQLLTLILS-YNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVP 118

Query: 203 RGI-ERLTGLRTL 214
            G    L+ L  L
Sbjct: 119 EGAFNDLSALSHL 131

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 17/129 (13%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRI 150
           Q++ +P         F +++ L +L +    + ++     P+  + L  L+ L L    +
Sbjct: 36  QLRRLP------AANFTRYSQLTSLDVGFNTISKL----EPELCQKLPMLKVLNLQHNEL 85

Query: 151 KELPETC-CELINLETLEINRCTRLKRLPQGM-EKLMNLRHLII-MNHVYLEYMPRG-IE 206
            +L +       NL  L +     ++++      K  NL  L +  N   L     G   
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNG--LSSTKLGTQV 142

Query: 207 RLTGLRTLS 215
           +L  L+ L 
Sbjct: 143 QLENLQELL 151

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 29/167 (17%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRI 150
           +I  I        D F     L  L + G N  EIG     +  + L ++  + LS+ + 
Sbjct: 392 KISKIE------SDAFSWLGHLEVLDL-GLN--EIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 151 KEL-PETCCELINLETLEI--NRCTRLKRLPQGMEKLMNLRHLII-MNHVYLEYMPRG-I 205
            +L   +   + +L+ L +       +   P   + L NL  L +  N+  +  +    +
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN--IANINDDML 500

Query: 206 ERLTGLRTL-------SEFVVGRTGGEHASKVCKLEALKGMNHLRGL 245
           E L  L  L       +         +HA+    +  LKG++HL  L
Sbjct: 501 EGLEKLEILDLQHNNLARL------WKHANPGGPIYFLKGLSHLHIL 541

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 16/132 (12%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICG---ENVWEIGNS-KIPKAMKNLIHLRFLKLS 146
            I  I       +D+ +    L  L +       +W+  N       +K L HL  L L 
Sbjct: 491 NIANIN------DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 147 WLRIKEL-PETCCELINLETLEINRCTRLKRLPQGM-EKLMNLRHLIIMNHVYLEYMPRG 204
                E+  E   +L  L+ +++     L  LP  +    ++L+ L +     +  + + 
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNL-QKNLITSVEKK 602

Query: 205 I--ERLTGLRTL 214
           +       L  L
Sbjct: 603 VFGPAFRNLTEL 614

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 15/128 (11%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRI 150
           Q++ +          F     L  L +    + E+G    P   + L  L++L L    +
Sbjct: 92  QLRSVD------PATFHGLGRLHTLHLDRCGLQELG----PGLFRGLAALQYLYLQDNAL 141

Query: 151 KELPETCCE-LINLETLEINRCTRLKRLPQGM-EKLMNLRHLIIMNHVYLEYMPRGI-ER 207
           + LP+     L NL  L ++   R+  +P+     L +L  L +++   + ++       
Sbjct: 142 QALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRL-LLHQNRVAHVHPHAFRD 199

Query: 208 LTGLRTLS 215
           L  L TL 
Sbjct: 200 LGRLMTLY 207

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 128 SKIPK-AMKNLIHLRFLKLSWLRIKELPETCC--ELINLETLEINRCTRLKRLPQGM-EK 183
             I K A      L  +++S   + E+ E      L  L  + I +   L  +     + 
Sbjct: 43  RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102

Query: 184 LMNLRHLIIMN 194
           L NL++L+I N
Sbjct: 103 LPNLQYLLISN 113

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 25/132 (18%), Positives = 40/132 (30%), Gaps = 21/132 (15%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI----PKAMKNL-IHLRFLKL 145
            IK +P      +           L I         N  I      +   L      L L
Sbjct: 115 GIKHLP------DVHKIHSLQKVLLDIQD-------NINIHTIERNSFVGLSFESVILWL 161

Query: 146 SWLRIKELPETCCELINLETLEINRCTRLKRLPQGM-EKLMNLRHLIIMNHVYLEYMPRG 204
           +   I+E+  +      L+ L ++    L+ LP  +         L I +   +  +P  
Sbjct: 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI-SRTRIHSLPSY 220

Query: 205 I-ERLTGLRTLS 215
             E L  LR  S
Sbjct: 221 GLENLKKLRARS 232

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 18/117 (15%)

Query: 102 LEDVFKQFTCLRALRICG---ENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCC 158
           L+ +      L  +       E + E+ N         L  L  +      +K+LP+   
Sbjct: 165 LKKLPDLPPSLEFIAAGNNQLEELPELQN---------LPFLTAIYADNNSLKKLPD--- 212

Query: 159 ELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLS 215
             ++LE++       L+ LP+ ++ L  L  +   ++  L+ +P     L  L    
Sbjct: 213 LPLSLESIVAGNN-ILEELPE-LQNLPFLTTIYA-DNNLLKTLPDLPPSLEALNVRD 266

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187
           +++P+  ++L  L     +   + +LP        LE L ++   +L++LP+ ++    L
Sbjct: 104 TELPELPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNN-QLEKLPE-LQNSSFL 155

Query: 188 RHLII-MNHVYLEYMPRGIERLTGL 211
           + + +  N   L+ +P     L  +
Sbjct: 156 KIIDVDNNS--LKKLPDLPPSLEFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 12/88 (13%)

Query: 128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187
           S +P+   +L  L     S   + ELPE    L +L     N    L  LP  +E L  +
Sbjct: 84  SSLPELPPHLESLV---ASCNSLTELPELPQSLKSLLVDN-NNLKALSDLPPLLEYL-GV 138

Query: 188 RHLIIMNHVYLEYMPRGIERLTGLRTLS 215
            +    N   LE +P  ++  + L+ + 
Sbjct: 139 SN----NQ--LEKLP-ELQNSSFLKIID 159

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187
           +++P+  +NL   + L + +  ++E P+    + +L     +    +  LPQ +++L ++
Sbjct: 350 AEVPELPQNL---KQLHVEYNPLREFPDIPESVEDLRMN--SHLAEVPELPQNLKQL-HV 403

Query: 188 RHLIIMNHVYLEYMPRGIERLTGLR 212
                 N   L   P   E +  LR
Sbjct: 404 ET----NP--LREFPDIPESVEDLR 422

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 17/128 (13%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRI 150
           +++ I       E  F+    L+ L +   N+       +P  +  L+ L  L++S    
Sbjct: 183 KLEYIS------EGAFEGLFNLKYLNLGMCNI-----KDMP-NLTPLVGLEELEMSGNHF 230

Query: 151 KELPETC-CELINLETLEINRCTRLKRLPQGM-EKLMNLRHLIIMNHVYLEYMPRGI-ER 207
            E+       L +L+ L +    ++  + +   + L +L  L  + H  L  +P  +   
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVEL-NLAHNNLSSLPHDLFTP 288

Query: 208 LTGLRTLS 215
           L  L  L 
Sbjct: 289 LRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 131 PKAMKNLIHLRFLKLSWLRIKELPETC-CELINLETLEINRCTRLKRLPQGM-EKLMNLR 188
               ++L HL  L+L    I+++       L +L TLE+     L  +P G  E L  LR
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLR 150

Query: 189 HLII-MNHVYLEYMPRGI-ERLTGLRTL 214
            L +  N   +E +P     R+  L  L
Sbjct: 151 ELWLRNNP--IESIPSYAFNRVPSLMRL 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 34/145 (23%)

Query: 94  GIPQEKKEL------------EDVFKQFTCLRALRICGENVWEIGNSKI----PKAMKNL 137
            +P     L            E    + T L +L +         ++ +     +A   +
Sbjct: 36  SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL--------SHNHLNFISSEAFVPV 87

Query: 138 IHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQGM-EKLMNLRHLIIM-N 194
            +LR+L LS   +  L      +L  LE L +     +  + +   E +  L+ L +  N
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 195 HVYLEYMPRGI----ERLTGLRTLS 215
              +   P  +     +L  L  L 
Sbjct: 147 Q--ISRFPVELIKDGNKLPKLMLLD 169

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 35/116 (30%)

Query: 129 KIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETL-------------EINRCTRL 174
            IP ++ +L  LR LKL    ++ E+P+    +  LETL              ++ CT L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492

Query: 175 KRL-----------PQGMEKLMNLRHLIIMN-----HVYLEYMPRGIERLTGLRTL 214
             +           P+ + +L NL  L + N     ++     P  +     L  L
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-----PAELGDCRSLIWL 543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 10/89 (11%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187
             +   +     L+ L LS  ++  +         +  + +    +L  + + +    NL
Sbjct: 182 YDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNL 239

Query: 188 RHLIIM-NHVYLEYMPRGIERLTGLRTLS 215
            H  +  N  +   +     +   ++T++
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 131 PKAMKNLIHLRFLKLSWLRIKELPETCCE-LINLETLEINRCTRLKRLPQGMEKLMNLRH 189
              +  L  LR L+LS  RI+ L         +LE L+++   RL+ +      + +LRH
Sbjct: 69  MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS-HNRLQNISCC--PMASLRH 125

Query: 190 LIIMNHVYLEYMPRGIE--RLTGLRTLS 215
           L +  +   + +P   E   LT L  L 
Sbjct: 126 LDLSFN-DFDVLPVCKEFGNLTKLTFLG 152

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 20/134 (14%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRI 150
           +I+ I        +   +++ L  L +    +  I       ++  L  LR L L   ++
Sbjct: 204 KIQAIE------LEDLLRYSKLYRLGLGHNQIRMIE----NGSLSFLPTLRELHLDNNKL 253

Query: 151 KELPETCCELINLETLEINRCTRLKRLPQGM-------EKLMNLRHLIIM-NHVYLEYMP 202
             +P    +L  L+ + ++    + ++            K      + +  N V    + 
Sbjct: 254 SRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 203 RGI-ERLTGLRTLS 215
                 +T    + 
Sbjct: 313 PATFRCVTDRLAIQ 326

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 10/89 (11%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL 187
             +   +     L+ L LS  ++  +         +  + +    +L  + + +    NL
Sbjct: 182 YDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNL 239

Query: 188 RHLIIM-NHVYLEYMPRGIERLTGLRTLS 215
            H  +  N  +   +     +   ++T++
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 11/119 (9%)

Query: 108 QFTCLRALRICGENVWEIGNS----KIPKAMKNLIHLRFLKLSWLRIKELPE--TCCELI 161
           +   L  + +    +    N      I   +  + HL+ L L+  R        T  E  
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451

Query: 162 NLETLEI--NRCTRLKRLPQGMEKLMNLRHLIIMN--HVYLEYMPRGI-ERLTGLRTLS 215
           +LE L +  N            +    L HL ++   H YL  +P G+   LT LR LS
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 28/133 (21%), Positives = 40/133 (30%), Gaps = 23/133 (17%)

Query: 91  QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGN--SKIP-KAMKNLIHLRFLKLSW 147
            I  I       ED F     L  L +         N  S +     K L  L FL L  
Sbjct: 87  GINTIE------EDSFSSLGSLEHLDLSY-------NYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 148 LRIKELPETCC--ELINLETLEINRCTRLKRLPQGM-EKLMNLRHLII-MNHVYLEYMPR 203
              K L ET     L  L+ L +       ++ +     L  L  L I  +   L+    
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD--LQSYEP 191

Query: 204 GI-ERLTGLRTLS 215
              + +  +  L 
Sbjct: 192 KSLKSIQNVSHLI 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.74
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.72
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.72
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.72
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.69
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.69
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.69
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.69
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.68
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.68
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.68
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.68
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.67
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.67
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.66
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.66
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.66
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.65
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.65
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.65
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.64
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.64
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.64
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.64
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.63
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.63
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.63
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.62
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.62
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.62
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.62
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.62
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.61
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.6
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.6
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.6
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.6
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.6
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.6
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.6
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.6
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.58
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.58
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.58
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.57
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.57
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.57
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.57
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.56
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.56
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.56
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.55
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.55
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.53
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.52
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.51
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.5
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.47
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.45
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.45
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.45
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.45
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.44
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.41
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.39
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.39
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.39
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.38
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.38
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.35
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.33
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.33
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.33
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.28
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.28
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.26
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.23
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.21
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.2
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.19
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.03
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.02
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.97
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.93
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	98.8
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.72
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.62
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.56
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.42
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.17
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.97
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.69
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.76
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.55
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.07
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.91
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.61
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.72
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.28

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=4.1e-23  Score=186.04  Aligned_cols=197  Identities=18%  Similarity=0.220  Sum_probs=164.1

Q ss_pred             hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh
Q 048772          101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG  180 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~  180 (333)
                      .++..+.++++|++|++++|.+     ..+|..++.+++|++|++++|.++.+|..++++++|++|++++|+.+..+|..
T Consensus        95 ~lp~~l~~l~~L~~L~L~~n~l-----~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~  169 (328)
T 4fcg_A           95 QFPDQAFRLSHLQHMTIDAAGL-----MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP  169 (328)
T ss_dssp             SCCSCGGGGTTCSEEEEESSCC-----CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred             hcChhhhhCCCCCEEECCCCCc-----cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChh
Confidence            4566677799999999999998     78898899999999999999999999999999999999999998888899988


Q ss_pred             hhc---------CCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEccc
Q 048772          181 MEK---------LMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRML  251 (333)
Q Consensus       181 ~~~---------L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~  251 (333)
                      ++.         +++|++|++++|. +..+|..++++++|++|++.++....        .+..+..+++|+. |++.+.
T Consensus       170 ~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~--------l~~~l~~l~~L~~-L~Ls~n  239 (328)
T 4fcg_A          170 LASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSA--------LGPAIHHLPKLEE-LDLRGC  239 (328)
T ss_dssp             SEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCC--------CCGGGGGCTTCCE-EECTTC
T ss_pred             HhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCc--------CchhhccCCCCCE-EECcCC
Confidence            765         9999999999998 77999999999999999998877654        2234667777886 888763


Q ss_pred             CCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhh
Q 048772          252 GDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNF  331 (333)
Q Consensus       252 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l  331 (333)
                      .    ..+..+..++.+++|+.|+++.|...+.            ++..+..   +++|+.|++++|...+.+|.|++.+
T Consensus       240 ~----~~~~~p~~~~~l~~L~~L~L~~n~~~~~------------~p~~~~~---l~~L~~L~L~~n~~~~~iP~~l~~L  300 (328)
T 4fcg_A          240 T----ALRNYPPIFGGRAPLKRLILKDCSNLLT------------LPLDIHR---LTQLEKLDLRGCVNLSRLPSLIAQL  300 (328)
T ss_dssp             T----TCCBCCCCTTCCCCCCEEECTTCTTCCB------------CCTTGGG---CTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred             c----chhhhHHHhcCCCCCCEEECCCCCchhh------------cchhhhc---CCCCCEEeCCCCCchhhccHHHhhc
Confidence            3    3345677889999999999998753322            5556667   8899999999987766599999875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=9.2e-21  Score=170.64  Aligned_cols=188  Identities=21%  Similarity=0.209  Sum_probs=156.1

Q ss_pred             cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCC
Q 048772          109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLR  188 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~  188 (333)
                      ...++.|++++|.+     ..+|..++++++|++|++++|.++.+|..++++++|++|++++ +.+..+|..++++++|+
T Consensus        80 ~~~l~~L~L~~n~l-----~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~l~~l~~L~  153 (328)
T 4fcg_A           80 QPGRVALELRSVPL-----PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR-NPLRALPASIASLNRLR  153 (328)
T ss_dssp             STTCCEEEEESSCC-----SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEES-CCCCCCCGGGGGCTTCC
T ss_pred             ccceeEEEccCCCc-----hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCC-CccccCcHHHhcCcCCC
Confidence            57899999999999     7899999999999999999999999999999999999999999 67889999999999999


Q ss_pred             eeecccccccccCchhhcC---------CCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchh
Q 048772          189 HLIIMNHVYLEYMPRGIER---------LTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDE  259 (333)
Q Consensus       189 ~L~l~~~~~l~~~p~~i~~---------L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~  259 (333)
                      +|++++|..++.+|..++.         +++|++|++.++....        .+..+..+++|+. |++.+..-     .
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------lp~~l~~l~~L~~-L~L~~N~l-----~  219 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--------LPASIANLQNLKS-LKIRNSPL-----S  219 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC--------CCGGGGGCTTCCE-EEEESSCC-----C
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc--------chHhhcCCCCCCE-EEccCCCC-----C
Confidence            9999999888999987765         9999999999987653        2234666677776 77776322     2


Q ss_pred             hhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhh
Q 048772          260 AKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNF  331 (333)
Q Consensus       260 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l  331 (333)
                      .++..+..+++|+.|++++|...+.            ++..+..   +++|+.|++++|...+.+|.+++.+
T Consensus       220 ~l~~~l~~l~~L~~L~Ls~n~~~~~------------~p~~~~~---l~~L~~L~L~~n~~~~~~p~~~~~l  276 (328)
T 4fcg_A          220 ALGPAIHHLPKLEELDLRGCTALRN------------YPPIFGG---RAPLKRLILKDCSNLLTLPLDIHRL  276 (328)
T ss_dssp             CCCGGGGGCTTCCEEECTTCTTCCB------------CCCCTTC---CCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred             cCchhhccCCCCCEEECcCCcchhh------------hHHHhcC---CCCCCEEECCCCCchhhcchhhhcC
Confidence            3556788999999999998753322            4556666   8899999999987665589888754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=5.7e-20  Score=164.38  Aligned_cols=196  Identities=17%  Similarity=0.232  Sum_probs=136.8

Q ss_pred             hhhhHhhhcccccceEeec-cccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCC-cC
Q 048772          101 ELEDVFKQFTCLRALRICG-ENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLK-RL  177 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~-~l  177 (333)
                      .++..+.+++.|++|++++ |.+.    ..+|..++++++|++|++++|.++ .+|..++++++|++|++++ +.+. .+
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~  141 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY-NALSGTL  141 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS-SEEESCC
T ss_pred             ccChhHhCCCCCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC-CccCCcC
Confidence            4567788899999999995 7662    567888999999999999999987 7888899999999999998 5555 78


Q ss_pred             ChhhhcCCCCCeeecccccccccCchhhcCCC-CCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCC
Q 048772          178 PQGMEKLMNLRHLIIMNHVYLEYMPRGIERLT-GLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLAN  256 (333)
Q Consensus       178 p~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~  256 (333)
                      |..++++++|++|++++|.....+|..++.++ +|++|++.++....       ..+..+..++ |+. |++.+    +.
T Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-------~~~~~~~~l~-L~~-L~Ls~----N~  208 (313)
T 1ogq_A          142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-------KIPPTFANLN-LAF-VDLSR----NM  208 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-------ECCGGGGGCC-CSE-EECCS----SE
T ss_pred             ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-------cCChHHhCCc-ccE-EECcC----Cc
Confidence            88899999999999999884448888899888 89999887665432       2223333443 554 55554    22


Q ss_pred             chhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhh
Q 048772          257 VDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN  330 (333)
Q Consensus       257 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~  330 (333)
                      ..+..+..+..+++|+.|++++|...+             .+..+..   +++|++|++++|.+.+.+|.++..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~---l~~L~~L~Ls~N~l~~~~p~~l~~  266 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAF-------------DLGKVGL---SKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECC-------------BGGGCCC---CTTCCEEECCSSCCEECCCGGGGG
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceee-------------ecCcccc---cCCCCEEECcCCcccCcCChHHhc
Confidence            233445566667777777776664221             1122333   556666666666655335655544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.78  E-value=5.2e-20  Score=164.65  Aligned_cols=203  Identities=17%  Similarity=0.159  Sum_probs=157.4

Q ss_pred             hHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEecc
Q 048772           91 QIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEIN  169 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~  169 (333)
                      .+.+.+.....++..+.++++|++|++++|.+.    ..+|..+..+++|++|++++|.++ .+|..++++++|++|+++
T Consensus        82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  157 (313)
T 1ogq_A           82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS----GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             EEEEETTEESCCCGGGGGCTTCSEEEEEEECCE----EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             eCCCCCcccccCChhHhcCCCCCEEECcCCeeC----CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence            333323444466778899999999999999982    378889999999999999999988 789999999999999999


Q ss_pred             CCCCCC-cCChhhhcCC-CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeE
Q 048772          170 RCTRLK-RLPQGMEKLM-NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLK  247 (333)
Q Consensus       170 ~~~~~~-~lp~~~~~L~-~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~  247 (333)
                      + +.+. .+|..++.++ +|++|++++|.....+|..++.++ |++|++.++....       .....+..+++|+. |+
T Consensus       158 ~-N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~-L~  227 (313)
T 1ogq_A          158 G-NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-------DASVLFGSDKNTQK-IH  227 (313)
T ss_dssp             S-SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-------CCGGGCCTTSCCSE-EE
T ss_pred             C-CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-------cCCHHHhcCCCCCE-EE
Confidence            9 5566 8999999998 999999999985558888899987 9999987765442       33445666777776 77


Q ss_pred             EcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhh
Q 048772          248 IRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEW  327 (333)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w  327 (333)
                      +.+..    ..+ .+..+..+++|++|+++.|...+.            ++..+..   +++|+.|++++|.+.+.+|.+
T Consensus       228 L~~N~----l~~-~~~~~~~l~~L~~L~Ls~N~l~~~------------~p~~l~~---l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          228 LAKNS----LAF-DLGKVGLSKNLNGLDLRNNRIYGT------------LPQGLTQ---LKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             CCSSE----ECC-BGGGCCCCTTCCEEECCSSCCEEC------------CCGGGGG---CTTCCEEECCSSEEEEECCCS
T ss_pred             CCCCc----eee-ecCcccccCCCCEEECcCCcccCc------------CChHHhc---CcCCCEEECcCCcccccCCCC
Confidence            76532    112 233477789999999998853322            4556667   888999999998887547764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.76  E-value=2e-18  Score=172.41  Aligned_cols=115  Identities=18%  Similarity=0.237  Sum_probs=73.7

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCChh
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLPQG  180 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~  180 (333)
                      ++..+..+++|++|++++|.+.    ..+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.....+|.+
T Consensus       434 ~p~~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~  509 (768)
T 3rgz_A          434 IPSSLGSLSKLRDLKLWLNMLE----GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW  509 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             ccHHHhcCCCCCEEECCCCccc----CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence            3444555566666666666551    355666666666777777766665 56666777777777777764333366777


Q ss_pred             hhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeC
Q 048772          181 MEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVG  220 (333)
Q Consensus       181 ~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~  220 (333)
                      ++.+++|++|++++|...+.+|..++.+++|+.|++.++.
T Consensus       510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            7777777777777776445667777777777777765543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.75  E-value=2.2e-18  Score=172.01  Aligned_cols=105  Identities=19%  Similarity=0.276  Sum_probs=90.8

Q ss_pred             hhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCcCC
Q 048772          100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKRLP  178 (333)
Q Consensus       100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp  178 (333)
                      ..++..+..+++|++|++++|.+.    ..+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.....+|
T Consensus       456 ~~~p~~~~~l~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  531 (768)
T 3rgz_A          456 GEIPQELMYVKTLETLILDFNDLT----GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP  531 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             CcCCHHHcCCCCceEEEecCCccc----CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence            356777889999999999999982    477889999999999999999988 889999999999999999955445899


Q ss_pred             hhhhcCCCCCeeecccccccccCchhhcCC
Q 048772          179 QGMEKLMNLRHLIIMNHVYLEYMPRGIERL  208 (333)
Q Consensus       179 ~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L  208 (333)
                      ..++++++|+.|++++|.....+|..+..+
T Consensus       532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~  561 (768)
T 3rgz_A          532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQ  561 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred             HHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence            999999999999999998666777665543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.74  E-value=5.6e-18  Score=149.20  Aligned_cols=201  Identities=21%  Similarity=0.248  Sum_probs=148.5

Q ss_pred             HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCc-Cccc-chhhhcccc
Q 048772           86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLR-IKEL-PETCCELIN  162 (333)
Q Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~-i~~l-p~~i~~L~~  162 (333)
                      .++.+.+.+... ....+..+..+++|++|++++|.+     ..+ |..+..+++|++|++++|. ++.+ |..+..+++
T Consensus        33 ~l~~L~l~~n~i-~~~~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~  106 (285)
T 1ozn_A           33 ASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVL-----ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR  106 (285)
T ss_dssp             TCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCC-----CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred             CceEEEeeCCcC-CccCHHHcccCCCCCEEECCCCcc-----ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence            344444444322 223345678899999999999988     444 6678899999999999997 8877 578899999


Q ss_pred             CcEEeccCCCCCCcC-ChhhhcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcc
Q 048772          163 LETLEINRCTRLKRL-PQGMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMN  240 (333)
Q Consensus       163 L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~  240 (333)
                      |++|++++ +.+..+ |..+.++++|++|++++|. +..+|.. ++.+++|++|++.++....       .....+..++
T Consensus       107 L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~  177 (285)
T 1ozn_A          107 LHTLHLDR-CGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS-------VPERAFRGLH  177 (285)
T ss_dssp             CCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE-------ECTTTTTTCT
T ss_pred             CCEEECCC-CcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc-------cCHHHhcCcc
Confidence            99999999 556666 5668899999999999998 6777654 8899999999998776543       2223355667


Q ss_pred             cccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772          241 HLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI  320 (333)
Q Consensus       241 ~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~  320 (333)
                      .|+. |++.+.    ...+..+..+..+++|+.|++++|...+.            ..+.+..   +++|+.|++++|.+
T Consensus       178 ~L~~-L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~---l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          178 SLDR-LLLHQN----RVAHVHPHAFRDLGRLMTLYLFANNLSAL------------PTEALAP---LRALQYLRLNDNPW  237 (285)
T ss_dssp             TCCE-EECCSS----CCCEECTTTTTTCTTCCEEECCSSCCSCC------------CHHHHTT---CTTCCEEECCSSCE
T ss_pred             ccCE-EECCCC----cccccCHhHccCcccccEeeCCCCcCCcC------------CHHHccc---CcccCEEeccCCCc
Confidence            7776 777663    23344567788899999999998854322            2234566   78899999998865


Q ss_pred             h
Q 048772          321 W  321 (333)
Q Consensus       321 ~  321 (333)
                      .
T Consensus       238 ~  238 (285)
T 1ozn_A          238 V  238 (285)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=2.7e-18  Score=150.38  Aligned_cols=185  Identities=21%  Similarity=0.243  Sum_probs=124.2

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCChh-hhc
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQG-MEK  183 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-~~~  183 (333)
                      +..+++|++|++++|.+     ..++ .+..+++|++|++++|.++.+|. .++++++|++|++++ +.+..+|.. +++
T Consensus        59 l~~l~~L~~L~l~~n~l-----~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~  131 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKL-----HDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDK  131 (272)
T ss_dssp             GGGCTTCCEEECTTSCC-----CCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTT
T ss_pred             cccCCCCcEEECCCCCC-----CCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC-CcCCccCHHHhcc
Confidence            56678888888888877     4543 67778888888888888877764 357788888888887 556666554 677


Q ss_pred             CCCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhh
Q 048772          184 LMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKH  262 (333)
Q Consensus       184 L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~  262 (333)
                      +++|++|++++|. +..+|.. ++.+++|++|++.++....       .....+..+++|+. |++.+..    ..+..+
T Consensus       132 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~-L~L~~N~----l~~~~~  198 (272)
T 3rfs_A          132 LTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQS-------LPEGVFDKLTQLKD-LRLYQNQ----LKSVPD  198 (272)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSSC----CSCCCT
T ss_pred             CCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCc-------cCHHHhcCCccCCE-EECCCCc----CCccCH
Confidence            8888888888886 5666654 5778888888877765543       22223455566665 6665521    222333


Q ss_pred             hcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhhh
Q 048772          263 VDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNFW  332 (333)
Q Consensus       263 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l~  332 (333)
                      ..+..+++|+.|+++.|..                   ...   +++|+.|++.++...+.+|.|++.++
T Consensus       199 ~~~~~l~~L~~L~l~~N~~-------------------~~~---~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPW-------------------DCT---CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCB-------------------CCC---TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             HHHhCCcCCCEEEccCCCc-------------------ccc---CcHHHHHHHHHHhCCCcccCcccccC
Confidence            4567778888888876631                   122   55677777777766655788877654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.74  E-value=6.1e-18  Score=153.62  Aligned_cols=219  Identities=18%  Similarity=0.163  Sum_probs=140.2

Q ss_pred             HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchh-hhccccC
Q 048772           86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPET-CCELINL  163 (333)
Q Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L  163 (333)
                      .++.+.+.+... ....+..+.++++|++|++++|.+     ..+ |..+..+++|++|++++|.++.+|.. ++++++|
T Consensus        53 ~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  126 (353)
T 2z80_A           53 AVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGI-----NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL  126 (353)
T ss_dssp             TCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred             cCcEEECCCCcC-cccCHHHhccCCCCCEEECCCCcc-----CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence            444445544332 223344678889999999999887     444 45688889999999999998888865 7889999


Q ss_pred             cEEeccCCCCCCcCCh--hhhcCCCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcc
Q 048772          164 ETLEINRCTRLKRLPQ--GMEKLMNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMN  240 (333)
Q Consensus       164 ~~L~l~~~~~~~~lp~--~~~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~  240 (333)
                      ++|++++ +.+..+|.  .+.++++|++|++++|..+..+| ..++++++|++|++.++....       .....+..++
T Consensus       127 ~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~l~~l~  198 (353)
T 2z80_A          127 TFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-------YEPKSLKSIQ  198 (353)
T ss_dssp             SEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-------ECTTTTTTCS
T ss_pred             CEEECCC-CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-------cCHHHHhccc
Confidence            9999998 67888886  67889999999998885466664 458888899999888776543       2234455566


Q ss_pred             cccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCc-------------------cchHHHHHHhhhc
Q 048772          241 HLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENE-------------------ENDEAITKIAKSV  301 (333)
Q Consensus       241 ~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~l  301 (333)
                      +|+. |++.+..-    .......+..+++|+.|++++|...+.....                   .....+..+++.+
T Consensus       199 ~L~~-L~l~~n~l----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l  273 (353)
T 2z80_A          199 NVSH-LILHMKQH----ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL  273 (353)
T ss_dssp             EEEE-EEEECSCS----TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred             cCCe-ecCCCCcc----ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence            6665 66655321    1111122334566777777766544322110                   0112222344445


Q ss_pred             cCCCCCCCceeeEEeeecChhhhhhh
Q 048772          302 RVCLLWDNCHPLKYSRYGIWIVWKEW  327 (333)
Q Consensus       302 ~~~~~~~~L~~L~l~~~~~~~~~p~w  327 (333)
                      ..   +++|+.|++++|.+.. +|.+
T Consensus       274 ~~---l~~L~~L~Ls~N~l~~-i~~~  295 (353)
T 2z80_A          274 NQ---ISGLLELEFSRNQLKS-VPDG  295 (353)
T ss_dssp             HT---CTTCCEEECCSSCCCC-CCTT
T ss_pred             hc---ccCCCEEECCCCCCCc-cCHH
Confidence            55   5566666666666655 5554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.73  E-value=1.1e-18  Score=155.24  Aligned_cols=198  Identities=16%  Similarity=0.170  Sum_probs=94.8

Q ss_pred             hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh--hh
Q 048772          104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ--GM  181 (333)
Q Consensus       104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~~  181 (333)
                      .+|.++++|++|++++|.+...  ...|..+..+++|++|++++|.+..+|..+..+++|++|++++ +.+..+|.  .+
T Consensus        46 ~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~  122 (306)
T 2z66_A           46 GVFDKLTQLTKLSLSSNGLSFK--GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVF  122 (306)
T ss_dssp             TTTTTCTTCSEEECCSSCCCEE--EEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT-SEEESSTTTTTT
T ss_pred             hHhhccccCCEEECCCCccCcc--cCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCC-Ccccccccchhh
Confidence            3455566666666666655110  1113445555556666666555555555555555555555555 33444432  34


Q ss_pred             hcCCCCCeeeccccccccc-------------------------CchhhcCCCCCCccceEEeCCCCCcccCcccchhhh
Q 048772          182 EKLMNLRHLIIMNHVYLEY-------------------------MPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEAL  236 (333)
Q Consensus       182 ~~L~~L~~L~l~~~~~l~~-------------------------~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L  236 (333)
                      .++++|++|++++|.....                         +|..++.+++|++|++.++....       .....+
T Consensus       123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~  195 (306)
T 2z66_A          123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-------LSPTAF  195 (306)
T ss_dssp             TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-------ECTTTT
T ss_pred             hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC-------cCHHHh
Confidence            4555555555555442222                         33444444444444444333221       112233


Q ss_pred             cCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEe
Q 048772          237 KGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYS  316 (333)
Q Consensus       237 ~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~  316 (333)
                      ..+++|+. |++.+..    ..+.....+..+++|+.|++++|...+.            .+..+..  ++++|+.|+++
T Consensus       196 ~~l~~L~~-L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~--~~~~L~~L~L~  256 (306)
T 2z66_A          196 NSLSSLQV-LNMSHNN----FFSLDTFPYKCLNSLQVLDYSLNHIMTS------------KKQELQH--FPSSLAFLNLT  256 (306)
T ss_dssp             TTCTTCCE-EECTTSC----CSBCCSGGGTTCTTCCEEECTTSCCCBC------------SSSSCCC--CCTTCCEEECT
T ss_pred             cCCCCCCE-EECCCCc----cCccChhhccCcccCCEeECCCCCCccc------------CHHHHHh--hhccCCEEEcc
Confidence            34444444 4444321    1111222355566666666665542222            2233444  13588999988


Q ss_pred             eecChh-----hhhhhHhh
Q 048772          317 RYGIWI-----VWKEWVMN  330 (333)
Q Consensus       317 ~~~~~~-----~~p~w~~~  330 (333)
                      +|.+..     .++.|+..
T Consensus       257 ~N~~~~~c~~~~~~~~l~~  275 (306)
T 2z66_A          257 QNDFACTCEHQSFLQWIKD  275 (306)
T ss_dssp             TCCEECSGGGHHHHHHHHH
T ss_pred             CCCeecccChHHHHHHHHh
Confidence            876531     14567653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.72  E-value=5e-19  Score=173.05  Aligned_cols=171  Identities=13%  Similarity=0.087  Sum_probs=86.1

Q ss_pred             cchHhh--cccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCC--cCChhhhcC------CCCCeeeccccccc
Q 048772          130 IPKAMK--NLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLK--RLPQGMEKL------MNLRHLIIMNHVYL  198 (333)
Q Consensus       130 lp~~~~--~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~--~lp~~~~~L------~~L~~L~l~~~~~l  198 (333)
                      +|..++  ++++|++|++++|.+. .+|..++++++|++|++++|..+.  .+|..+++|      ++|++|++++|. +
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-L  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-C
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-C
Confidence            444444  5555555555555432 445555555555555555522133  355555444      555555555554 3


Q ss_pred             ccCch--hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCC-CCceE
Q 048772          199 EYMPR--GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKN-LDRLE  275 (333)
Q Consensus       199 ~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~  275 (333)
                      ..+|.  .++++++|++|++.++...+       ... .+..+++|+. |++.+.     ....++..+..+++ |++|+
T Consensus       318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g-------~ip-~~~~l~~L~~-L~L~~N-----~l~~lp~~l~~l~~~L~~L~  383 (636)
T 4eco_A          318 KTFPVETSLQKMKKLGMLECLYNQLEG-------KLP-AFGSEIKLAS-LNLAYN-----QITEIPANFCGFTEQVENLS  383 (636)
T ss_dssp             SSCCCHHHHTTCTTCCEEECCSCCCEE-------ECC-CCEEEEEESE-EECCSS-----EEEECCTTSEEECTTCCEEE
T ss_pred             CccCchhhhccCCCCCEEeCcCCcCcc-------chh-hhCCCCCCCE-EECCCC-----ccccccHhhhhhcccCcEEE
Confidence            45555  55555555555555444331       111 4444455554 554431     11244556666766 77777


Q ss_pred             EEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHh
Q 048772          276 LWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVM  329 (333)
Q Consensus       276 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~  329 (333)
                      +++|...     .        ++..+.. ..+++|+.|++++|.+.+.+|.++.
T Consensus       384 Ls~N~l~-----~--------lp~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          384 FAHNKLK-----Y--------IPNIFDA-KSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             CCSSCCS-----S--------CCSCCCT-TCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             ccCCcCc-----c--------cchhhhh-cccCccCEEECcCCcCCCcchhhhc
Confidence            7766422     1        3333322 0023677888877776654566554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=1.4e-17  Score=161.75  Aligned_cols=115  Identities=21%  Similarity=0.250  Sum_probs=87.9

Q ss_pred             hhhhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCC
Q 048772          101 ELEDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLP  178 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp  178 (333)
                      .++.++..++.|++|++++|.+     ..+| ..++.+++|++|++++|.++.+|. .++++++|++|++++ +.+..+|
T Consensus        66 lp~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~  139 (597)
T 3oja_B           66 LPAALLDSFRQVELLNLNDLQI-----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLP  139 (597)
T ss_dssp             ECTHHHHHCCCCSEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCC
T ss_pred             cCHHHHccCCCCcEEECCCCCC-----CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC-CCCCCCC
Confidence            3455677888888888888887     4444 467888888888888888887764 568888888888888 6677887


Q ss_pred             hh-hhcCCCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCC
Q 048772          179 QG-MEKLMNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       179 ~~-~~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~  222 (333)
                      .. ++++++|++|++++|. +..+| ..++.+++|++|++.++...
T Consensus       140 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          140 RGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             HHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC
Confidence            76 4788888888888887 44544 45888888888887766544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.72  E-value=1.6e-17  Score=146.32  Aligned_cols=189  Identities=16%  Similarity=0.168  Sum_probs=145.1

Q ss_pred             cccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcC-ChhhhcCC
Q 048772          109 FTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRL-PQGMEKLM  185 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~~~~L~  185 (333)
                      .+.|++|++++|.+     ..+| ..+..+++|++|++++|.++.+ |..++++++|++|++++|..+..+ |..+..++
T Consensus        31 ~~~l~~L~l~~n~i-----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~  105 (285)
T 1ozn_A           31 PAASQRIFLHGNRI-----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG  105 (285)
T ss_dssp             CTTCSEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred             CCCceEEEeeCCcC-----CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence            46899999999998     5555 4588999999999999999877 678999999999999995448877 67799999


Q ss_pred             CCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772          186 NLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD  264 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~  264 (333)
                      +|++|++++|. +..+ |..++++++|++|++.++....       .....+..+++|+. |++.+.    .........
T Consensus       106 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~-L~l~~n----~l~~~~~~~  172 (285)
T 1ozn_A          106 RLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQA-------LPDDTFRDLGNLTH-LFLHGN----RISSVPERA  172 (285)
T ss_dssp             TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSS----CCCEECTTT
T ss_pred             CCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccc-------cCHhHhccCCCccE-EECCCC----cccccCHHH
Confidence            99999999998 5555 5668999999999998876554       22233566677776 777653    222333345


Q ss_pred             CcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhh
Q 048772          265 LKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN  330 (333)
Q Consensus       265 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~  330 (333)
                      +..+++|+.|++++|...+.            .+..+..   +++|+.|++++|.+....|.++..
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~------------~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~  223 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVAHV------------HPHAFRD---LGRLMTLYLFANNLSALPTEALAP  223 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEE------------CTTTTTT---CTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             hcCccccCEEECCCCccccc------------CHhHccC---cccccEeeCCCCcCCcCCHHHccc
Confidence            88899999999998853221            2455666   889999999999888723355543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.71  E-value=2.4e-17  Score=151.62  Aligned_cols=114  Identities=21%  Similarity=0.263  Sum_probs=85.2

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ  179 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~  179 (333)
                      .+.++..+++|++|++++|.+     ..+| ..+..+++|++|++++|.++.+| ..++++++|++|++++ +.+..+|.
T Consensus        61 ~~~~~~~l~~L~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~  134 (390)
T 3o6n_A           61 PAALLDSFRQVELLNLNDLQI-----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLPR  134 (390)
T ss_dssp             CTHHHHHCCCCSEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCT
T ss_pred             ChhHhcccccCcEEECCCCcc-----cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC-CccCcCCH
Confidence            345567788888888888887     4444 36778888888888888887765 4578888888888888 66778877


Q ss_pred             h-hhcCCCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCC
Q 048772          180 G-MEKLMNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       180 ~-~~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~  222 (333)
                      . ++++++|++|++++|. +..++ ..++.+++|++|++.++...
T Consensus       135 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          135 GIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             HHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC
Confidence            6 4778888888888887 45554 44788888888887766544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.71  E-value=4.4e-18  Score=166.34  Aligned_cols=192  Identities=15%  Similarity=0.189  Sum_probs=148.3

Q ss_pred             hhhHhh--hcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc-Cc--ccchhhhcc------ccCcEEeccC
Q 048772          102 LEDVFK--QFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-IK--ELPETCCEL------INLETLEINR  170 (333)
Q Consensus       102 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~--~lp~~i~~L------~~L~~L~l~~  170 (333)
                      +|..+.  ++++|++|++++|.+.    ..+|..++++++|++|++++|. ++  .+|..++++      ++|++|++++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNL----TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTC----SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCC----ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence            555555  7888888888888763    6789999999999999999998 87  599999987      9999999999


Q ss_pred             CCCCCcCCh--hhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCccc-ccceeE
Q 048772          171 CTRLKRLPQ--GMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNH-LRGLLK  247 (333)
Q Consensus       171 ~~~~~~lp~--~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~-L~~~L~  247 (333)
                       +.+..+|.  .++++++|++|++++|...+.+| .++.+++|++|++.++....        .+..+..++. |+. |+
T Consensus       315 -n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~--------lp~~l~~l~~~L~~-L~  383 (636)
T 4eco_A          315 -NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE--------IPANFCGFTEQVEN-LS  383 (636)
T ss_dssp             -SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE--------CCTTSEEECTTCCE-EE
T ss_pred             -CcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc--------ccHhhhhhcccCcE-EE
Confidence             66789999  89999999999999998433899 89999999999987665332        2334566666 776 77


Q ss_pred             EcccCCCCCchhhhhhcCcccC--CCCceEEEeccCCCCCCCccchHHHHHHhhhcc-------CCCCCCCceeeEEeee
Q 048772          248 IRMLGDLANVDEAKHVDLKEKK--NLDRLELWFDNVGMPDENEENDEAITKIAKSVR-------VCLLWDNCHPLKYSRY  318 (333)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~L~~L~l~~~  318 (333)
                      +.+..    . ..++..+..++  +|+.|+++.|...+.            .+..+.       .   +++|+.|++++|
T Consensus       384 Ls~N~----l-~~lp~~~~~~~l~~L~~L~Ls~N~l~~~------------~p~~l~~~~~~~~~---~~~L~~L~Ls~N  443 (636)
T 4eco_A          384 FAHNK----L-KYIPNIFDAKSVSVMSAIDFSYNEIGSV------------DGKNFDPLDPTPFK---GINVSSINLSNN  443 (636)
T ss_dssp             CCSSC----C-SSCCSCCCTTCSSCEEEEECCSSCTTTT------------TTCSSCTTCSSCCC---CCCEEEEECCSS
T ss_pred             ccCCc----C-cccchhhhhcccCccCEEECcCCcCCCc------------chhhhccccccccc---CCCCCEEECcCC
Confidence            76532    1 24566666654  899999998864433            333344       3   568999999999


Q ss_pred             cChhhhhhhHh
Q 048772          319 GIWIVWKEWVM  329 (333)
Q Consensus       319 ~~~~~~p~w~~  329 (333)
                      .+.. +|.++.
T Consensus       444 ~l~~-lp~~~~  453 (636)
T 4eco_A          444 QISK-FPKELF  453 (636)
T ss_dssp             CCCS-CCTHHH
T ss_pred             ccCc-CCHHHH
Confidence            9987 887654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.70  E-value=9.8e-18  Score=157.35  Aligned_cols=130  Identities=21%  Similarity=0.274  Sum_probs=87.9

Q ss_pred             HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccch-hhhccccC
Q 048772           86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELPE-TCCELINL  163 (333)
Q Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L  163 (333)
                      ..+.+.+.+.. .....+..|.++++|++|++++|.+     ..++ ..+..+++|++|++++|.++.+|. .++++++|
T Consensus        76 ~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  149 (452)
T 3zyi_A           76 NTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSI-----RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL  149 (452)
T ss_dssp             TCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC-----CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred             CccEEECcCCc-CceECHHHcCCCCCCCEEECCCCcc-----CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence            44444444432 2233456677888888888888887     4443 567778888888888888887774 46778888


Q ss_pred             cEEeccCCCCCCcCCh-hhhcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeCCC
Q 048772          164 ETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       164 ~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~  222 (333)
                      ++|++++ +.+..+|. .+.++++|++|++++|..+..+|.. +..+++|++|++.++...
T Consensus       150 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          150 RELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            8888887 56666664 4667777777777776556666653 667777777776655443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=4.2e-18  Score=170.66  Aligned_cols=91  Identities=20%  Similarity=0.250  Sum_probs=51.8

Q ss_pred             cchHhhcccccCeeeccCCcCcc------------------cchhhh--ccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772          130 IPKAMKNLIHLRFLKLSWLRIKE------------------LPETCC--ELINLETLEINRCTRLKRLPQGMEKLMNLRH  189 (333)
Q Consensus       130 lp~~~~~l~~L~~L~l~~~~i~~------------------lp~~i~--~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~  189 (333)
                      +|..++++++|++|++++|.++.                  +|..++  ++++|++|++++|.....+|..+++|++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            55556666666666666666555                  566555  6666666666664445556666666666666


Q ss_pred             eecccccccc--cCchhhcCCC-------CCCccceEEeC
Q 048772          190 LIIMNHVYLE--YMPRGIERLT-------GLRTLSEFVVG  220 (333)
Q Consensus       190 L~l~~~~~l~--~~p~~i~~L~-------~L~~L~~~~~~  220 (333)
                      |++++|..+.  .+|..+++++       +|++|++.++.
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            6666654222  3555444443       55555555444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.70  E-value=1.2e-17  Score=156.11  Aligned_cols=113  Identities=24%  Similarity=0.384  Sum_probs=75.2

Q ss_pred             hhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCCh-
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQ-  179 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-  179 (333)
                      +..|.++++|++|++++|.+     ..++ ..+..+++|++|++++|.++.+|. .+..+++|++|++++ +.+..+|. 
T Consensus        81 ~~~~~~l~~L~~L~Ls~n~i-----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~  154 (440)
T 3zyj_A           81 VNSFKHLRHLEILQLSRNHI-----RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSY  154 (440)
T ss_dssp             TTTTSSCSSCCEEECCSSCC-----CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTT
T ss_pred             HHHhhCCCCCCEEECCCCcC-----CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC-CcccccCHH
Confidence            45567777788888887776     4433 456777777777777777777764 567777777777777 55666554 


Q ss_pred             hhhcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeCC
Q 048772          180 GMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGR  221 (333)
Q Consensus       180 ~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~  221 (333)
                      .+.++++|++|++++|..+..+|.. +..+++|++|++.++..
T Consensus       155 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence            4666677777777665555555543 66666666666655543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.69  E-value=6.6e-17  Score=146.76  Aligned_cols=179  Identities=17%  Similarity=0.227  Sum_probs=140.8

Q ss_pred             ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQG-MEKLMN  186 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~  186 (333)
                      +.|++|++++|.+     ..+|. .+.++++|++|++++|.++.++ ..++++++|++|++++ +.+..+|.. ++++++
T Consensus        52 ~~L~~L~l~~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~  125 (353)
T 2z80_A           52 EAVKSLDLSNNRI-----TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSS  125 (353)
T ss_dssp             TTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTT
T ss_pred             ccCcEEECCCCcC-----cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCcc
Confidence            5899999999998     66665 6899999999999999999775 6799999999999999 778899876 889999


Q ss_pred             CCeeecccccccccCch--hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772          187 LRHLIIMNHVYLEYMPR--GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD  264 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~  264 (333)
                      |++|++++|. +..+|.  .++.+++|++|++.++....      ......+..+++|+. |++.+.    ...+..+..
T Consensus       126 L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~~l~~L~~-L~l~~n----~l~~~~~~~  193 (353)
T 2z80_A          126 LTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT------KIQRKDFAGLTFLEE-LEIDAS----DLQSYEPKS  193 (353)
T ss_dssp             CSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC------EECTTTTTTCCEEEE-EEEEET----TCCEECTTT
T ss_pred             CCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc------ccCHHHccCCCCCCE-EECCCC----CcCccCHHH
Confidence            9999999998 788887  58999999999999875332      223345667777776 777763    233445678


Q ss_pred             CcccCCCCceEEEeccCCCCCCCccchHHHHHHhhh-ccCCCCCCCceeeEEeeecChh
Q 048772          265 LKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKS-VRVCLLWDNCHPLKYSRYGIWI  322 (333)
Q Consensus       265 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~L~~L~l~~~~~~~  322 (333)
                      ++.+++|++|++++|..     ..        ++.. ...   +++|+.|++++|.+..
T Consensus       194 l~~l~~L~~L~l~~n~l-----~~--------~~~~~~~~---~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          194 LKSIQNVSHLILHMKQH-----IL--------LLEIFVDV---TSSVECLELRDTDLDT  236 (353)
T ss_dssp             TTTCSEEEEEEEECSCS-----TT--------HHHHHHHH---TTTEEEEEEESCBCTT
T ss_pred             HhccccCCeecCCCCcc-----cc--------chhhhhhh---cccccEEECCCCcccc
Confidence            88999999999998852     11        2222 233   5678999988877654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.69  E-value=3.6e-17  Score=147.06  Aligned_cols=110  Identities=22%  Similarity=0.289  Sum_probs=72.4

Q ss_pred             hhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh-h
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ-G  180 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~  180 (333)
                      +..+.++++|++|++++|.+     ..+ |..+..+++|++|++++|.++.+|..+.  ++|++|++++ +.+..+|. .
T Consensus        69 ~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~  140 (330)
T 1xku_A           69 DGDFKNLKNLHTLILINNKI-----SKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSV  140 (330)
T ss_dssp             TTTTTTCTTCCEEECCSSCC-----CCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHH
T ss_pred             hhhhccCCCCCEEECCCCcC-----CeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCC-CcccccCHhH
Confidence            34567777788888887777     444 5667777788888887777777776544  5677777776 45555543 3


Q ss_pred             hhcCCCCCeeecccccccc---cCchhhcCCCCCCccceEEeCC
Q 048772          181 MEKLMNLRHLIIMNHVYLE---YMPRGIERLTGLRTLSEFVVGR  221 (333)
Q Consensus       181 ~~~L~~L~~L~l~~~~~l~---~~p~~i~~L~~L~~L~~~~~~~  221 (333)
                      +.++++|++|++++|. +.   ..|..++.+++|++|++.++..
T Consensus       141 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          141 FNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             HTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             hcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCcc
Confidence            6667777777777765 32   3345566677777766655543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.69  E-value=1.2e-16  Score=139.66  Aligned_cols=177  Identities=22%  Similarity=0.269  Sum_probs=131.9

Q ss_pred             ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccchh-hhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELPET-CCELINLETLEINRCTRLKRLPQG-MEKLMN  186 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~  186 (333)
                      +.++.|++++|.+     ..+|. .+..+++|++|++++|.++.+|.. +.++++|++|++++ +.+..+|.. +.++++
T Consensus        37 ~~l~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~  110 (270)
T 2o6q_A           37 ADTKKLDLQSNKL-----SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-NKLQALPIGVFDQLVN  110 (270)
T ss_dssp             TTCSEEECCSSCC-----SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS-SCCCCCCTTTTTTCSS
T ss_pred             CCCCEEECcCCCC-----CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC-CcCCcCCHhHcccccC
Confidence            5789999999998     55554 688899999999999999988865 47899999999999 678888754 688999


Q ss_pred             CCeeecccccccccCch-hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772          187 LRHLIIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL  265 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l  265 (333)
                      |++|++++|. +..+|. .++.+++|++|++.++....       .....+..+++|+. |++.+..    .....+..+
T Consensus       111 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~-L~L~~n~----l~~~~~~~~  177 (270)
T 2o6q_A          111 LAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQS-------LPKGVFDKLTSLKE-LRLYNNQ----LKRVPEGAF  177 (270)
T ss_dssp             CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSSC----CSCCCTTTT
T ss_pred             CCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCc-------cCHhHccCCcccce-eEecCCc----CcEeChhHh
Confidence            9999999988 666664 47899999999998776554       22223556666775 7766522    222233457


Q ss_pred             cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772          266 KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI  320 (333)
Q Consensus       266 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~  320 (333)
                      ..+++|++|+++.|.....            ....+..   +++|+.|++.+|.+
T Consensus       178 ~~l~~L~~L~L~~N~l~~~------------~~~~~~~---l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          178 DKLTELKTLKLDNNQLKRV------------PEGAFDS---LEKLKMLQLQENPW  217 (270)
T ss_dssp             TTCTTCCEEECCSSCCSCC------------CTTTTTT---CTTCCEEECCSSCB
T ss_pred             ccCCCcCEEECCCCcCCcC------------CHHHhcc---ccCCCEEEecCCCe
Confidence            7889999999998853322            1123455   77899999998764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.69  E-value=5.8e-17  Score=144.48  Aligned_cols=177  Identities=19%  Similarity=0.189  Sum_probs=134.0

Q ss_pred             HhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcC
Q 048772          105 VFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKL  184 (333)
Q Consensus       105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L  184 (333)
                      .+..+++|++|++++|.+     ..++. +..+++|++|++++|.++.+| .++.+++|++|++++ +.+..+|. +..+
T Consensus        58 ~~~~l~~L~~L~L~~n~i-----~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~-n~l~~~~~-l~~l  128 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQI-----TDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS-TQITDVTP-LAGL  128 (308)
T ss_dssp             TGGGCTTCCEEECCSSCC-----CCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT-SCCCCCGG-GTTC
T ss_pred             hhhccCCCCEEEccCCcC-----CCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC-CCCCCchh-hcCC
Confidence            357788999999999988     66666 888999999999999988876 588899999999998 66888775 8899


Q ss_pred             CCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772          185 MNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD  264 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~  264 (333)
                      ++|++|++++|. +..+|. ++.+++|++|++.++....         +..+..+++|+. |++.+..- ..    .+ .
T Consensus       129 ~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~---------~~~l~~l~~L~~-L~l~~n~l-~~----~~-~  190 (308)
T 1h6u_A          129 SNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSD---------LTPLANLSKLTT-LKADDNKI-SD----IS-P  190 (308)
T ss_dssp             TTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCC---------CGGGTTCTTCCE-EECCSSCC-CC----CG-G
T ss_pred             CCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCC---------ChhhcCCCCCCE-EECCCCcc-Cc----Ch-h
Confidence            999999999987 677765 8889999999988776543         112666777776 77765321 11    11 2


Q ss_pred             CcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhh
Q 048772          265 LKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKE  326 (333)
Q Consensus       265 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~  326 (333)
                      +..+++|++|++++|...+             +. .+..   +++|+.|++++|.+.. .|.
T Consensus       191 l~~l~~L~~L~L~~N~l~~-------------~~-~l~~---l~~L~~L~l~~N~i~~-~~~  234 (308)
T 1h6u_A          191 LASLPNLIEVHLKNNQISD-------------VS-PLAN---TSNLFIVTLTNQTITN-QPV  234 (308)
T ss_dssp             GGGCTTCCEEECTTSCCCB-------------CG-GGTT---CTTCCEEEEEEEEEEC-CCE
T ss_pred             hcCCCCCCEEEccCCccCc-------------cc-cccC---CCCCCEEEccCCeeec-CCe
Confidence            7788999999998774321             12 3555   8899999999988765 444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=1.2e-17  Score=148.53  Aligned_cols=160  Identities=21%  Similarity=0.244  Sum_probs=117.8

Q ss_pred             hhHhhhcccccceEeeccccccccCCCcc--hHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCc--C
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKIP--KAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKR--L  177 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~--l  177 (333)
                      +..+..+++|++|++++|.+     ..++  ..+..+++|++|++++|.+..+ |..++++++|++|++++ +.+..  +
T Consensus        94 ~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~  167 (306)
T 2z66_A           94 SSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG-NSFQENFL  167 (306)
T ss_dssp             EEEEETCTTCCEEECTTSEE-----ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT-CEEGGGEE
T ss_pred             hhhcCCCCCCCEEECCCCcc-----cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC-Cccccccc
Confidence            33455667777777777766     4444  3577788888888888887744 46678888999999988 55554  7


Q ss_pred             ChhhhcCCCCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCC
Q 048772          178 PQGMEKLMNLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLAN  256 (333)
Q Consensus       178 p~~~~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~  256 (333)
                      |..+..+++|++|++++|. +..+ |..++.+++|++|++.++....       .....+..+++|+. |++.+.    .
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~L~~N----~  234 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFS-------LDTFPYKCLNSLQV-LDYSLN----H  234 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSB-------CCSGGGTTCTTCCE-EECTTS----C
T ss_pred             hhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCc-------cChhhccCcccCCE-eECCCC----C
Confidence            8889999999999999998 5555 6779999999999998776554       22234566777886 888763    3


Q ss_pred             chhhhhhcCccc-CCCCceEEEeccC
Q 048772          257 VDEAKHVDLKEK-KNLDRLELWFDNV  281 (333)
Q Consensus       257 ~~~~~~~~l~~l-~~L~~L~l~~~~~  281 (333)
                      ..+..+..+..+ ++|+.|++++|..
T Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          235 IMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             CcccCHHHHHhhhccCCEEEccCCCe
Confidence            334456677777 4999999998754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.69  E-value=4.6e-17  Score=152.26  Aligned_cols=185  Identities=18%  Similarity=0.233  Sum_probs=148.7

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCCh
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQ  179 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~  179 (333)
                      .+..|.++++|++|++++|.+     ..+|. .+..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..+|.
T Consensus       104 ~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          104 EIGAFNGLANLNTLELFDNRL-----TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             CGGGGTTCSSCCEEECCSSCC-----SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             ChhhccCCccCCEEECCCCcC-----CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence            456788999999999999998     66665 58899999999999999998884 789999999999999888888876


Q ss_pred             -hhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCch
Q 048772          180 -GMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVD  258 (333)
Q Consensus       180 -~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~  258 (333)
                       .+.++++|++|++++|. +..+|. +..+++|++|++.++....       .....+..+++|+. |.+.+.    ...
T Consensus       179 ~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~-L~L~~n----~l~  244 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGNHLSA-------IRPGSFQGLMHLQK-LWMIQS----QIQ  244 (440)
T ss_dssp             TTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTSCCCE-------ECTTTTTTCTTCCE-EECTTC----CCC
T ss_pred             chhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCCccCc-------cChhhhccCccCCE-EECCCC----cee
Confidence             58899999999999998 788874 8899999999998776543       33455667777776 777763    333


Q ss_pred             hhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772          259 EAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI  320 (333)
Q Consensus       259 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~  320 (333)
                      ...+..+..+++|+.|+|+.|.....            ....+..   +++|+.|++++|.+
T Consensus       245 ~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~---l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          245 VIERNAFDNLQSLVEINLAHNNLTLL------------PHDLFTP---LHHLERIHLHHNPW  291 (440)
T ss_dssp             EECTTSSTTCTTCCEEECTTSCCCCC------------CTTTTSS---CTTCCEEECCSSCE
T ss_pred             EEChhhhcCCCCCCEEECCCCCCCcc------------ChhHhcc---ccCCCEEEcCCCCc
Confidence            44566788999999999998854322            1234456   78999999998754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.68  E-value=6.2e-17  Score=145.70  Aligned_cols=108  Identities=29%  Similarity=0.398  Sum_probs=65.4

Q ss_pred             hhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh-
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG-  180 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-  180 (333)
                      +..+.++++|++|++++|.+     ..+ |..+..+++|++|++++|.++.+|..+.  ++|++|++++ +.+..+|.. 
T Consensus        71 ~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~  142 (332)
T 2ft3_A           71 KDDFKGLQHLYALVLVNNKI-----SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGV  142 (332)
T ss_dssp             TTTTTTCTTCCEEECCSSCC-----CEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGG
T ss_pred             HhHhhCCCCCcEEECCCCcc-----CccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCC-CccCccCHhH
Confidence            44556667777777777766     333 4556667777777777777666665544  5677777766 556665543 


Q ss_pred             hhcCCCCCeeecccccccc---cCchhhcCCCCCCccceEEeC
Q 048772          181 MEKLMNLRHLIIMNHVYLE---YMPRGIERLTGLRTLSEFVVG  220 (333)
Q Consensus       181 ~~~L~~L~~L~l~~~~~l~---~~p~~i~~L~~L~~L~~~~~~  220 (333)
                      +.++++|++|++++|. +.   ..|..++.+ +|++|++..+.
T Consensus       143 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          143 FSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             GSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             hCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCC
Confidence            5667777777776665 32   233445555 55555554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.68  E-value=1.6e-16  Score=139.00  Aligned_cols=184  Identities=16%  Similarity=0.252  Sum_probs=141.9

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh-hhcC
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG-MEKL  184 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L  184 (333)
                      ...+++|+.|++.++.+     ..++ .+..+++|++|++++|.++.++ .++++++|++|++++ +.+..+|.. ++++
T Consensus        37 ~~~l~~L~~L~l~~~~i-----~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l  108 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDI-----KSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG-NQLQSLPNGVFDKL  108 (272)
T ss_dssp             HHHHTTCCEEECTTSCC-----CCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT-SCCCCCCTTTTTTC
T ss_pred             cccccceeeeeeCCCCc-----cccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC-CccCccChhHhcCC
Confidence            35689999999999998     5654 5889999999999999998875 789999999999999 678877755 6899


Q ss_pred             CCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhh
Q 048772          185 MNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHV  263 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~  263 (333)
                      ++|++|++++|. +..+|.. ++.+++|++|++.++....       .....+..++.|+. |++.+..    ..+..+.
T Consensus       109 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~-L~l~~n~----l~~~~~~  175 (272)
T 3rfs_A          109 TNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQS-------LPKGVFDKLTNLTE-LDLSYNQ----LQSLPEG  175 (272)
T ss_dssp             TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSSC----CCCCCTT
T ss_pred             cCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCc-------cCHHHhccCccCCE-EECCCCC----cCccCHH
Confidence            999999999998 6777655 7999999999998876554       22233566677776 7777632    2233344


Q ss_pred             cCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhh
Q 048772          264 DLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWK  325 (333)
Q Consensus       264 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p  325 (333)
                      .++.+++|++|+++.|...+.            .+..+..   +++|+.|++.+|.....+|
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~---l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKSV------------PDGVFDR---LTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSCC------------CTTTTTT---CTTCCEEECCSSCBCCCTT
T ss_pred             HhcCCccCCEEECCCCcCCcc------------CHHHHhC---CcCCCEEEccCCCccccCc
Confidence            578899999999998864322            2233455   7899999999987654244

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.68  E-value=1.5e-16  Score=150.20  Aligned_cols=174  Identities=28%  Similarity=0.341  Sum_probs=120.0

Q ss_pred             HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccch-hhhccccC
Q 048772           86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPE-TCCELINL  163 (333)
Q Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L  163 (333)
                      ..+.+.+.+.. .....+..|.++++|++|++++|.+     ..+ |..+.++++|++|++++|.++.+|. .++++++|
T Consensus        33 ~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  106 (477)
T 2id5_A           33 ETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIV-----SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL  106 (477)
T ss_dssp             TCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred             CCcEEECCCCc-cceECHhHccCCCCCCEEECCCCcc-----CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence            44445554433 2233356778889999999999987     444 6678889999999999999888885 46889999


Q ss_pred             cEEeccCCCCCCcC-ChhhhcCCCCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCccc
Q 048772          164 ETLEINRCTRLKRL-PQGMEKLMNLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNH  241 (333)
Q Consensus       164 ~~L~l~~~~~~~~l-p~~~~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~  241 (333)
                      ++|++++ +.+..+ |..+.++++|++|++++|. +..+ |..++.+++|++|++.++....       .....+..++.
T Consensus       107 ~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~l~~l~~  177 (477)
T 2id5_A          107 TKLDISE-NKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTS-------IPTEALSHLHG  177 (477)
T ss_dssp             CEEECTT-SCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSS-------CCHHHHTTCTT
T ss_pred             CEEECCC-CccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcc-------cChhHhcccCC
Confidence            9999998 555544 5678888999999998887 4444 4568888888888888776543       22334556666


Q ss_pred             ccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEec
Q 048772          242 LRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFD  279 (333)
Q Consensus       242 L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  279 (333)
                      |+. |++....    ........+..+++|+.|+++.|
T Consensus       178 L~~-L~l~~n~----i~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          178 LIV-LRLRHLN----INAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             CCE-EEEESCC----CCEECTTCSCSCTTCCEEEEECC
T ss_pred             CcE-EeCCCCc----CcEeChhhcccCcccceeeCCCC
Confidence            665 6666522    22223345666666777766654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.68  E-value=5.6e-17  Score=152.17  Aligned_cols=186  Identities=19%  Similarity=0.204  Sum_probs=149.6

Q ss_pred             hhhhHhhhcccccceEeeccccccccCCCcchH-hhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCC
Q 048772          101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKA-MKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLP  178 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp  178 (333)
                      ..+..|..+++|++|++++|.+     ..+|.. +..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..+|
T Consensus       114 ~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          114 IEVGAFNGLASLNTLELFDNWL-----TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCC-----SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             cChhhccCcccCCEEECCCCcC-----CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence            3456788999999999999998     666654 7889999999999999998885 78999999999999988898887


Q ss_pred             h-hhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCc
Q 048772          179 Q-GMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANV  257 (333)
Q Consensus       179 ~-~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~  257 (333)
                      . .+.++++|++|++++|. +..+| .+..+++|++|++.++....       .....+..+++|+. |++.+.    ..
T Consensus       189 ~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~-L~L~~n----~l  254 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGNHFPE-------IRPGSFHGLSSLKK-LWVMNS----QV  254 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEECTTSCCSE-------ECGGGGTTCTTCCE-EECTTS----CC
T ss_pred             hhhccCCCCCCEEECCCCc-ccccc-cccccccccEEECcCCcCcc-------cCcccccCccCCCE-EEeCCC----cC
Confidence            6 48899999999999998 77886 48899999999998776553       33456777778886 887763    33


Q ss_pred             hhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772          258 DEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI  320 (333)
Q Consensus       258 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~  320 (333)
                      ....+..+..+++|+.|+|+.|.....            ....+..   +++|+.|++++|..
T Consensus       255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~---l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          255 SLIERNAFDGLASLVELNLAHNNLSSL------------PHDLFTP---LRYLVELHLHHNPW  302 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCC------------CTTSSTT---CTTCCEEECCSSCE
T ss_pred             ceECHHHhcCCCCCCEEECCCCcCCcc------------ChHHhcc---ccCCCEEEccCCCc
Confidence            344566788999999999998864322            1234456   78999999998754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=4.4e-17  Score=143.99  Aligned_cols=183  Identities=18%  Similarity=0.102  Sum_probs=141.8

Q ss_pred             ccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCC
Q 048772          110 TCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLR  188 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~  188 (333)
                      +.+++|++++|.+     ..+ |..+..+++|++|++++|.++.+|.. +.+++|++|++++ +.+..+|..+..+++|+
T Consensus        31 ~~l~~L~L~~N~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~  103 (290)
T 1p9a_G           31 KDTTILHLSENLL-----YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALT  103 (290)
T ss_dssp             TTCCEEECTTSCC-----SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS-SCCSSCCCCTTTCTTCC
T ss_pred             CCCCEEEcCCCcC-----CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC-CcCCcCchhhccCCCCC
Confidence            6899999999998     444 46789999999999999999988865 8999999999999 78999999999999999


Q ss_pred             eeecccccccccCch-hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcc
Q 048772          189 HLIIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKE  267 (333)
Q Consensus       189 ~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~  267 (333)
                      +|++++|. +..+|. .++.+++|++|++.++....       .....+..+++|+. |++.+..    ........+..
T Consensus       104 ~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~L~~N~----l~~l~~~~~~~  170 (290)
T 1p9a_G          104 VLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT-------LPPGLLTPTPKLEK-LSLANNN----LTELPAGLLNG  170 (290)
T ss_dssp             EEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC-------CCTTTTTTCTTCCE-EECTTSC----CSCCCTTTTTT
T ss_pred             EEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCc-------cChhhcccccCCCE-EECCCCc----CCccCHHHhcC
Confidence            99999998 777774 58999999999998776554       22233556677776 7776532    22222345678


Q ss_pred             cCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecCh------hhhhhhHh
Q 048772          268 KKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIW------IVWKEWVM  329 (333)
Q Consensus       268 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~------~~~p~w~~  329 (333)
                      +++|+.|+++.|...     .        ++..+..   .++|+.|++.+|.+.      . +..|+.
T Consensus       171 l~~L~~L~L~~N~l~-----~--------ip~~~~~---~~~L~~l~L~~Np~~C~c~~~~-l~~wl~  221 (290)
T 1p9a_G          171 LENLDTLLLQENSLY-----T--------IPKGFFG---SHLLPFAFLHGNPWLCNCEILY-FRRWLQ  221 (290)
T ss_dssp             CTTCCEEECCSSCCC-----C--------CCTTTTT---TCCCSEEECCSCCBCCSGGGHH-HHHHHH
T ss_pred             cCCCCEEECCCCcCC-----c--------cChhhcc---cccCCeEEeCCCCccCcCccHH-HHHHHH
Confidence            999999999988532     1        4455555   678999999987542      2 456765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.68  E-value=2e-16  Score=140.94  Aligned_cols=175  Identities=18%  Similarity=0.176  Sum_probs=141.3

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN  186 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~  186 (333)
                      ..+++|+.|++++|.+     ..+| .+..+++|++|++++|.++.+|. ++.+++|++|++++ +.+..+| .+..+++
T Consensus        38 ~~l~~L~~L~l~~~~i-----~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~-~~~~l~~  108 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGV-----TTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG-NPLKNVS-AIAGLQS  108 (308)
T ss_dssp             HHHHTCCEEECTTSCC-----CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS-CCCSCCG-GGTTCTT
T ss_pred             HHcCCcCEEEeeCCCc-----cCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccC-CcCCCch-hhcCCCC
Confidence            4689999999999998     6676 68899999999999999999988 99999999999999 6688886 6999999


Q ss_pred             CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772          187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK  266 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~  266 (333)
                      |++|++++|. +..+|. ++.+++|++|++.++....      .   ..+..+++|+. |++.+..- .    ..+. +.
T Consensus       109 L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~------~---~~l~~l~~L~~-L~l~~n~l-~----~~~~-l~  170 (308)
T 1h6u_A          109 IKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITN------I---SPLAGLTNLQY-LSIGNAQV-S----DLTP-LA  170 (308)
T ss_dssp             CCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCC------C---GGGGGCTTCCE-EECCSSCC-C----CCGG-GT
T ss_pred             CCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCc------C---ccccCCCCccE-EEccCCcC-C----CChh-hc
Confidence            9999999998 777875 9999999999998877654      1   12666777776 77776321 1    1222 88


Q ss_pred             ccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhh
Q 048772          267 EKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKE  326 (333)
Q Consensus       267 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~  326 (333)
                      .+++|+.|++++|.....             . .+..   +++|++|++++|.+.. +|.
T Consensus       171 ~l~~L~~L~l~~n~l~~~-------------~-~l~~---l~~L~~L~L~~N~l~~-~~~  212 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDI-------------S-PLAS---LPNLIEVHLKNNQISD-VSP  212 (308)
T ss_dssp             TCTTCCEEECCSSCCCCC-------------G-GGGG---CTTCCEEECTTSCCCB-CGG
T ss_pred             CCCCCCEEECCCCccCcC-------------h-hhcC---CCCCCEEEccCCccCc-ccc
Confidence            899999999998853211             1 2555   8899999999999887 663

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.67  E-value=1.7e-17  Score=161.25  Aligned_cols=158  Identities=16%  Similarity=0.074  Sum_probs=75.1

Q ss_pred             hcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcC-C-hhhhcCC
Q 048772          108 QFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRL-P-QGMEKLM  185 (333)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~l-p-~~~~~L~  185 (333)
                      .+++|++|++++|.+...  ..+|..+..+++|++|++++|.+..+|..++.+++|++|++++ +.+..+ | ..+.+++
T Consensus       348 ~l~~L~~L~ls~n~l~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFS--GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH-STLKRVTEFSAFLSLE  424 (606)
T ss_dssp             CCTTCCEEECCSSCEEEE--EECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTT-SEEESTTTTTTTTTCT
T ss_pred             cCCCCCEEECcCCccCCC--cchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCC-CccCCccChhhhhccc
Confidence            344455555555544100  0124555566666666666666555555555666666666665 333333 2 2455555


Q ss_pred             CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772          186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL  265 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l  265 (333)
                      +|++|++++|......|..++.+++|++|++.++....      ......+..++.|+. |++.+.    ...+..+..+
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~l~~L~~-L~Ls~n----~l~~~~~~~~  493 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD------NTLSNVFANTTNLTF-LDLSKC----QLEQISWGVF  493 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG------GEECSCCTTCTTCCE-EECTTS----CCCEECTTTT
T ss_pred             cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC------cchHHhhccCCCCCE-EECCCC----cCCccChhhh
Confidence            56666655555333344445555555555554433221      011223334444444 444442    1222233445


Q ss_pred             cccCCCCceEEEec
Q 048772          266 KEKKNLDRLELWFD  279 (333)
Q Consensus       266 ~~l~~L~~L~l~~~  279 (333)
                      ..+++|++|++++|
T Consensus       494 ~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          494 DTLHRLQLLNMSHN  507 (606)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             cccccCCEEECCCC
Confidence            55555555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.67  E-value=1.2e-16  Score=140.04  Aligned_cols=204  Identities=18%  Similarity=0.151  Sum_probs=144.2

Q ss_pred             HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccc-hhhhccccC
Q 048772           86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELP-ETCCELINL  163 (333)
Q Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L  163 (333)
                      .++.+.+.+... ....+..+.++++|++|++++|.+     ..++. .+..+++|++|++++|.++.++ ..++++++|
T Consensus        29 ~l~~L~ls~n~l-~~~~~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           29 STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (276)
T ss_dssp             TCCEEECTTCCC-CEECTTTTTTCTTCSEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CccEEECCCCcc-cccCHhHhccccCCcEEECCCCcC-----CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence            444455544332 222344678899999999999988     55554 6888999999999999998776 678999999


Q ss_pred             cEEeccCCCCCCcCCh-hhhcCCCCCeeeccccccccc--CchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcc
Q 048772          164 ETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLEY--MPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMN  240 (333)
Q Consensus       164 ~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~  240 (333)
                      ++|++++ +.+..++. .++++++|++|++++|. +..  +|..++.+++|++|++.++....    .....+..+.+|+
T Consensus       103 ~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~  176 (276)
T 2z62_A          103 QKLVAVE-TNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQS----IYCTDLRVLHQMP  176 (276)
T ss_dssp             CEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCE----ECGGGGHHHHTCT
T ss_pred             cEEECCC-CCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCc----CCHHHhhhhhhcc
Confidence            9999999 66777665 68899999999999998 554  68889999999999998877654    1133455666666


Q ss_pred             cccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772          241 HLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI  320 (333)
Q Consensus       241 ~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~  320 (333)
                      .|...+++.+..    . ...+.......+|+.|++++|.....            ....+..   +++|+.|++++|.+
T Consensus       177 ~l~l~L~ls~n~----l-~~~~~~~~~~~~L~~L~L~~n~l~~~------------~~~~~~~---l~~L~~L~l~~N~~  236 (276)
T 2z62_A          177 LLNLSLDLSLNP----M-NFIQPGAFKEIRLKELALDTNQLKSV------------PDGIFDR---LTSLQKIWLHTNPW  236 (276)
T ss_dssp             TCCEEEECCSSC----C-CEECTTSSCSCCEEEEECCSSCCSCC------------CTTTTTT---CCSCCEEECCSSCB
T ss_pred             ccceeeecCCCc----c-cccCccccCCCcccEEECCCCceeec------------CHhHhcc---cccccEEEccCCcc
Confidence            554125555421    1 12223333345899999998853322            1123455   78899999998866


Q ss_pred             h
Q 048772          321 W  321 (333)
Q Consensus       321 ~  321 (333)
                      .
T Consensus       237 ~  237 (276)
T 2z62_A          237 D  237 (276)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=4.7e-17  Score=163.08  Aligned_cols=160  Identities=17%  Similarity=0.218  Sum_probs=126.0

Q ss_pred             hhhHhhhcccccceEeeccccccccCCC------------------cchHhh--cccccCeeeccCCcC-cccchhhhcc
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSK------------------IPKAMK--NLIHLRFLKLSWLRI-KELPETCCEL  160 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~i-~~lp~~i~~L  160 (333)
                      +|..+.++++|++|++++|.+     ..                  +|..++  ++++|++|++++|.+ ..+|..++++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~L-----sg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L  514 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL  514 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCC-----CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred             hhHHHhcCCCCCEEECcCCcC-----CCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence            677788999999999999998     44                  888877  999999999999984 4889999999


Q ss_pred             ccCcEEeccCCCCCC--cCChhhhcCC-------CCCeeecccccccccCch--hhcCCCCCCccceEEeCCCCCcccCc
Q 048772          161 INLETLEINRCTRLK--RLPQGMEKLM-------NLRHLIIMNHVYLEYMPR--GIERLTGLRTLSEFVVGRTGGEHASK  229 (333)
Q Consensus       161 ~~L~~L~l~~~~~~~--~lp~~~~~L~-------~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~  229 (333)
                      ++|++|++++|..+.  .+|..+++++       +|++|++++|. +..+|.  .++++++|++|++.++....      
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~------  587 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRH------  587 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCB------
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCccc------
Confidence            999999999944366  4888888777       99999999998 668998  89999999999987765442      


Q ss_pred             ccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCC-CCceEEEeccCC
Q 048772          230 VCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKN-LDRLELWFDNVG  282 (333)
Q Consensus       230 ~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~  282 (333)
                         +..+..+++|+. |++.+..    .. .++..+..+++ |+.|+++.|...
T Consensus       588 ---lp~~~~L~~L~~-L~Ls~N~----l~-~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          588 ---LEAFGTNVKLTD-LKLDYNQ----IE-EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             ---CCCCCTTSEESE-EECCSSC----CS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             ---chhhcCCCcceE-EECcCCc----cc-cchHHHhhccccCCEEECcCCCCC
Confidence               115666777776 7776532    12 45667778887 888888877543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.67  E-value=4.1e-16  Score=137.79  Aligned_cols=172  Identities=15%  Similarity=0.177  Sum_probs=105.2

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN  186 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~  186 (333)
                      ..++.|+.|++++|.+     ..+| .+..+++|++|++++|.++.++. ++++++|++|++++ +.+..+|. ++.+++
T Consensus        43 ~~l~~L~~L~l~~~~i-----~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~  113 (291)
T 1h6t_A           43 NELNSIDQIIANNSDI-----KSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE-NKVKDLSS-LKDLKK  113 (291)
T ss_dssp             HHHHTCCEEECTTSCC-----CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCGGG-GTTCTT
T ss_pred             hhcCcccEEEccCCCc-----ccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC-CcCCCChh-hccCCC
Confidence            3566777777777766     4554 36667777777777777776665 77777777777777 55666553 677777


Q ss_pred             CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772          187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK  266 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~  266 (333)
                      |++|++++|. +..+| .++.+++|++|++.++....      .   ..+..+++|+. |++.+..-    .+ .+. +.
T Consensus       114 L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~------~---~~l~~l~~L~~-L~L~~N~l----~~-~~~-l~  175 (291)
T 1h6t_A          114 LKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD------I---TVLSRLTKLDT-LSLEDNQI----SD-IVP-LA  175 (291)
T ss_dssp             CCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCC------C---GGGGGCTTCSE-EECCSSCC----CC-CGG-GT
T ss_pred             CCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCc------c---hhhccCCCCCE-EEccCCcc----cc-chh-hc
Confidence            7777777776 55553 46677777777776655443      1   34455555554 55554211    11 111 66


Q ss_pred             ccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772          267 EKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI  322 (333)
Q Consensus       267 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~  322 (333)
                      .+++|+.|+++.|....             + ..+..   +++|+.|++++|....
T Consensus       176 ~l~~L~~L~L~~N~i~~-------------l-~~l~~---l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          176 GLTKLQNLYLSKNHISD-------------L-RALAG---LKNLDVLELFSQECLN  214 (291)
T ss_dssp             TCTTCCEEECCSSCCCB-------------C-GGGTT---CTTCSEEEEEEEEEEC
T ss_pred             CCCccCEEECCCCcCCC-------------C-hhhcc---CCCCCEEECcCCcccC
Confidence            67777777777663211             1 23444   6677777777765543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.66  E-value=3e-17  Score=146.57  Aligned_cols=211  Identities=16%  Similarity=0.139  Sum_probs=144.0

Q ss_pred             HHHHHHhhhhHhcCCccchhhhhHhh-------hcccccceEeeccccccccCCCcchHh--hcccccCeeeccCCcCcc
Q 048772           82 EWITASRRLQIKGIPQEKKELEDVFK-------QFTCLRALRICGENVWEIGNSKIPKAM--KNLIHLRFLKLSWLRIKE  152 (333)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~lp~~~--~~l~~L~~L~l~~~~i~~  152 (333)
                      .+....+.+.+.+.......++..+.       ++++|++|++++|.+.    ..+|..+  ..+++|++|++++|.++.
T Consensus        60 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~~l~~L~~L~Ls~N~l~~  135 (312)
T 1wwl_A           60 QFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT----GTAPPPLLEATGPDLNILNLRNVSWAT  135 (312)
T ss_dssp             HHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB----SCCCCCSSSCCSCCCSEEEEESCBCSS
T ss_pred             HHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc----chhHHHHHHhcCCCccEEEccCCCCcc
Confidence            34444555555443332223344333       6889999999999982    3567765  889999999999999998


Q ss_pred             cchhhhcc-----ccCcEEeccCCCCCCcCC-hhhhcCCCCCeeeccccccccc--Cchhh--cCCCCCCccceEEeCCC
Q 048772          153 LPETCCEL-----INLETLEINRCTRLKRLP-QGMEKLMNLRHLIIMNHVYLEY--MPRGI--ERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       153 lp~~i~~L-----~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~l~~~~~l~~--~p~~i--~~L~~L~~L~~~~~~~~  222 (333)
                      +|..++.+     ++|++|++++ +.+..+| ..++++++|++|++++|...+.  +|..+  +.+++|++|++.++...
T Consensus       136 ~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          136 RDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             SSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             hhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence            89888888     8999999999 6677766 7789999999999999974333  34455  88999999998877654


Q ss_pred             CCcccCcccchhh-hcCcccccceeEEcccCCCCCchhhh-hhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhh
Q 048772          223 GGEHASKVCKLEA-LKGMNHLRGLLKIRMLGDLANVDEAK-HVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKS  300 (333)
Q Consensus       223 ~~~~~~~~~~~~~-L~~L~~L~~~L~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  300 (333)
                      .     .+..... ...+++|+. |++.+..    ..+.. ...+..+++|++|++++|...     .        ++..
T Consensus       215 ~-----~~~~~~~~~~~l~~L~~-L~Ls~N~----l~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~--------ip~~  271 (312)
T 1wwl_A          215 T-----PSGVCSALAAARVQLQG-LDLSHNS----LRDAAGAPSCDWPSQLNSLNLSFTGLK-----Q--------VPKG  271 (312)
T ss_dssp             C-----HHHHHHHHHHTTCCCSE-EECTTSC----CCSSCCCSCCCCCTTCCEEECTTSCCS-----S--------CCSS
T ss_pred             c-----hHHHHHHHHhcCCCCCE-EECCCCc----CCcccchhhhhhcCCCCEEECCCCccC-----h--------hhhh
Confidence            3     1122222 345677776 7777632    12212 234556789999999887432     1        1111


Q ss_pred             ccCCCCCCCceeeEEeeecChhhhhh
Q 048772          301 VRVCLLWDNCHPLKYSRYGIWIVWKE  326 (333)
Q Consensus       301 l~~~~~~~~L~~L~l~~~~~~~~~p~  326 (333)
                           ++++|+.|++++|.+.+ +|.
T Consensus       272 -----~~~~L~~L~Ls~N~l~~-~p~  291 (312)
T 1wwl_A          272 -----LPAKLSVLDLSYNRLDR-NPS  291 (312)
T ss_dssp             -----CCSEEEEEECCSSCCCS-CCC
T ss_pred             -----ccCCceEEECCCCCCCC-Chh
Confidence                 12578888888888877 665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.66  E-value=3.5e-16  Score=151.93  Aligned_cols=133  Identities=23%  Similarity=0.252  Sum_probs=104.7

Q ss_pred             HHHHHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCccc-chhhhcc
Q 048772           83 WITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKEL-PETCCEL  160 (333)
Q Consensus        83 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L  160 (333)
                      +...++.+.+.+... ....+..|.++++|++|++++|.+     ..+ |..+.++++|++|++++|.++.+ |..++++
T Consensus        30 ~~~~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l-----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  103 (606)
T 3vq2_A           30 IPSSTKNIDLSFNPL-KILKSYSFSNFSELQWLDLSRCEI-----ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL  103 (606)
T ss_dssp             SCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred             CCCCcCEEECCCCCc-CEeChhhccCCccCcEEeCCCCcc-----cccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence            334455555554432 233455778899999999999988     454 55688999999999999998877 7889999


Q ss_pred             ccCcEEeccCCCCCCcCC-hhhhcCCCCCeeecccccccc--cCchhhcCCCCCCccceEEeCCCC
Q 048772          161 INLETLEINRCTRLKRLP-QGMEKLMNLRHLIIMNHVYLE--YMPRGIERLTGLRTLSEFVVGRTG  223 (333)
Q Consensus       161 ~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~~~~~  223 (333)
                      ++|++|++++ +.+..+| ..++++++|++|++++|. +.  .+|..++++++|++|++.++....
T Consensus       104 ~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          104 TSLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             TTCCEEECTT-SCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             ccCCEEEccC-CccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCccee
Confidence            9999999999 6677766 678999999999999998 44  578889999999999988776543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.66  E-value=4.8e-16  Score=134.33  Aligned_cols=103  Identities=23%  Similarity=0.391  Sum_probs=51.2

Q ss_pred             cccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCC
Q 048772          111 CLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNL  187 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L  187 (333)
                      .++.|++++|.+     ..++ ..+..+++|++|++++|.++.++ ..+.++++|++|++++ +.+..+|. .+..+++|
T Consensus        36 ~l~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L  109 (251)
T 3m19_A           36 DTEKLDLQSTGL-----ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLGVFDHLTQL  109 (251)
T ss_dssp             TCCEEECTTSCC-----CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTC
T ss_pred             CCCEEEccCCCc-----CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC-CcccccChhHhcccCCC
Confidence            455555555555     2222 23455555555555555555443 2345555555555555 44444442 24455555


Q ss_pred             CeeecccccccccCchh-hcCCCCCCccceEEeC
Q 048772          188 RHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVG  220 (333)
Q Consensus       188 ~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~  220 (333)
                      ++|++++|. +..+|.. ++.+++|++|++.++.
T Consensus       110 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~  142 (251)
T 3m19_A          110 DKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ  142 (251)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCc-CCCcChhHhccCCcccEEECcCCc
Confidence            555555554 4444433 3455555555554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.65  E-value=3e-16  Score=138.64  Aligned_cols=174  Identities=20%  Similarity=0.159  Sum_probs=124.2

Q ss_pred             HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcE
Q 048772           86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLET  165 (333)
Q Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~  165 (333)
                      ..+.+.+.+... ....+..+..+++|++|++++|.+     ..+|.. +.+++|++|++++|.++.+|..+..+++|++
T Consensus        32 ~l~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~  104 (290)
T 1p9a_G           32 DTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAEL-----TKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTV  104 (290)
T ss_dssp             TCCEEECTTSCC-SEEEGGGGTTCTTCCEEECTTSCC-----CEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCE
T ss_pred             CCCEEEcCCCcC-CccCHHHhhcCCCCCEEECCCCcc-----CcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCE
Confidence            334444443332 233456678888999999999888     566543 7788899999999998888888888999999


Q ss_pred             EeccCCCCCCcCC-hhhhcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCccccc
Q 048772          166 LEINRCTRLKRLP-QGMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLR  243 (333)
Q Consensus       166 L~l~~~~~~~~lp-~~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~  243 (333)
                      |++++ +.+..+| ..+.++++|++|++++|. +..+|.+ +..+++|++|++.++....       .....+..+++|+
T Consensus       105 L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------l~~~~~~~l~~L~  175 (290)
T 1p9a_G          105 LDVSF-NRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE-------LPAGLLNGLENLD  175 (290)
T ss_dssp             EECCS-SCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSC-------CCTTTTTTCTTCC
T ss_pred             EECCC-CcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCc-------cCHHHhcCcCCCC
Confidence            99998 6788776 458888999999999887 6777765 6788899998887766543       1122344556666


Q ss_pred             ceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccC
Q 048772          244 GLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNV  281 (333)
Q Consensus       244 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  281 (333)
                      . |++.+..     ...++..+....+|+.|++++|..
T Consensus       176 ~-L~L~~N~-----l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          176 T-LLLQENS-----LYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             E-EECCSSC-----CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             E-EECCCCc-----CCccChhhcccccCCeEEeCCCCc
Confidence            5 6665421     224556666777888898887754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.65  E-value=1.7e-16  Score=139.06  Aligned_cols=183  Identities=15%  Similarity=0.147  Sum_probs=137.1

Q ss_pred             ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCC-hhhhcCCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLP-QGMEKLMN  186 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~~~~L~~  186 (333)
                      +.|++|++++|.+     ..++. .+..+++|++|++++|.++.++. .++++++|++|++++ +.+..+| ..+.++++
T Consensus        28 ~~l~~L~ls~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~  101 (276)
T 2z62_A           28 FSTKNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSS  101 (276)
T ss_dssp             TTCCEEECTTCCC-----CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTT
T ss_pred             CCccEEECCCCcc-----cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC-CccCccChhhhcCCcc
Confidence            4799999999998     55554 68899999999999999998874 789999999999999 6677665 56899999


Q ss_pred             CCeeecccccccccCch-hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772          187 LRHLIIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL  265 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l  265 (333)
                      |++|++++|. +..++. .++.+++|++|++.++....      ......+..+++|+. |++.+..    ..+..+..+
T Consensus       102 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~l~~~~~~l~~L~~-L~Ls~N~----l~~~~~~~~  169 (276)
T 2z62_A          102 LQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS------FKLPEYFSNLTNLEH-LDLSSNK----IQSIYCTDL  169 (276)
T ss_dssp             CCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC------CCCCGGGGGCTTCCE-EECCSSC----CCEECGGGG
T ss_pred             ccEEECCCCC-ccccCchhcccCCCCCEEECcCCccce------ecCchhhccCCCCCE-EECCCCC----CCcCCHHHh
Confidence            9999999998 666665 59999999999998876553      223455667777776 7777632    222233455


Q ss_pred             cccCCCC----ceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhh
Q 048772          266 KEKKNLD----RLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEW  327 (333)
Q Consensus       266 ~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w  327 (333)
                      ..+++|+    .|++++|...     .        ++.....   ..+|+.|++++|.+.. +|.+
T Consensus       170 ~~l~~L~~l~l~L~ls~n~l~-----~--------~~~~~~~---~~~L~~L~L~~n~l~~-~~~~  218 (276)
T 2z62_A          170 RVLHQMPLLNLSLDLSLNPMN-----F--------IQPGAFK---EIRLKELALDTNQLKS-VPDG  218 (276)
T ss_dssp             HHHHTCTTCCEEEECCSSCCC-----E--------ECTTSSC---SCCEEEEECCSSCCSC-CCTT
T ss_pred             hhhhhccccceeeecCCCccc-----c--------cCccccC---CCcccEEECCCCceee-cCHh
Confidence            5566666    6777766421     1        2223333   4589999999999888 7764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.65  E-value=1e-16  Score=150.23  Aligned_cols=63  Identities=24%  Similarity=0.321  Sum_probs=26.5

Q ss_pred             hHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccC
Q 048772          104 DVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINR  170 (333)
Q Consensus       104 ~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~  170 (333)
                      ..+.++++|++|++++|.+.    ..+ |..+..+++|++|++++|.++.+ |..++++++|++|++++
T Consensus        48 ~~~~~l~~L~~L~L~~n~~~----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  112 (455)
T 3v47_A           48 TSFSRLQDLQFLKVEQQTPG----LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ  112 (455)
T ss_dssp             TTTSSCTTCCEEECCCCSTT----CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT
T ss_pred             hHhccCccccEEECcCCccc----ceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCC
Confidence            33444444444444444431    122 22344444444444444444433 33444444444444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.64  E-value=3.8e-16  Score=143.65  Aligned_cols=109  Identities=19%  Similarity=0.284  Sum_probs=95.2

Q ss_pred             hcccccceEeeccccccccCCCcchH-hhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCC-hhhhcC
Q 048772          108 QFTCLRALRICGENVWEIGNSKIPKA-MKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLP-QGMEKL  184 (333)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp-~~~~~L  184 (333)
                      .++++++|+++++.+     ..+|.. +..+++|++|++++|.++.+| ..++.+++|++|++++ +.+..+| ..++++
T Consensus        43 ~l~~l~~l~l~~~~l-----~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l  116 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTM-----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNV  116 (390)
T ss_dssp             GGCCCSEEEEESCEE-----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred             ccCCceEEEecCCch-----hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCC-CCCCcCCHHHhcCC
Confidence            468999999999998     778766 688999999999999999887 4899999999999999 6677775 458999


Q ss_pred             CCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCC
Q 048772          185 MNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTG  223 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~  223 (333)
                      ++|++|++++|. +..+|.. ++++++|++|++.++....
T Consensus       117 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~  155 (390)
T 3o6n_A          117 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER  155 (390)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCc
Confidence            999999999998 7889877 5899999999998876543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.64  E-value=4.3e-16  Score=139.98  Aligned_cols=157  Identities=17%  Similarity=0.197  Sum_probs=83.0

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCC---cC
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLK---RL  177 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~---~l  177 (333)
                      .+..+..+++|++|++++|.+     ..+|..+.  ++|++|++++|.++.++ ..++++++|++|++++ +.+.   ..
T Consensus        92 ~~~~~~~l~~L~~L~Ls~n~l-----~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~  163 (330)
T 1xku_A           92 SPGAFAPLVKLERLYLSKNQL-----KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIE  163 (330)
T ss_dssp             CTTTTTTCTTCCEEECCSSCC-----SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS-SCCCGGGBC
T ss_pred             CHHHhcCCCCCCEEECCCCcC-----CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCC-CcCCccCcC
Confidence            366778889999999998887     45554333  45666666666655544 2355555555555555 3332   23


Q ss_pred             ChhhhcCCCCCeeecccccccccCc----------------------hhhcCCCCCCccceEEeCCCCCcccCcccchhh
Q 048772          178 PQGMEKLMNLRHLIIMNHVYLEYMP----------------------RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEA  235 (333)
Q Consensus       178 p~~~~~L~~L~~L~l~~~~~l~~~p----------------------~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~  235 (333)
                      |..+.++++|++|++++|. +..+|                      ..++.+++|++|++.++....       .....
T Consensus       164 ~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~  235 (330)
T 1xku_A          164 NGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-------VDNGS  235 (330)
T ss_dssp             TTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-------ECTTT
T ss_pred             hhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-------eChhh
Confidence            3445555555555555444 33333                      345555555555555444332       11122


Q ss_pred             hcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEecc
Q 048772          236 LKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDN  280 (333)
Q Consensus       236 L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  280 (333)
                      +..+++|+. |++.+..     ...++..+..+++|++|++++|.
T Consensus       236 ~~~l~~L~~-L~L~~N~-----l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          236 LANTPHLRE-LHLNNNK-----LVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             GGGSTTCCE-EECCSSC-----CSSCCTTTTTCSSCCEEECCSSC
T ss_pred             ccCCCCCCE-EECCCCc-----CccCChhhccCCCcCEEECCCCc
Confidence            333444443 4444321     11334445556666666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.64  E-value=5.7e-16  Score=135.30  Aligned_cols=179  Identities=18%  Similarity=0.246  Sum_probs=137.5

Q ss_pred             cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCChh-hhcCCCCC
Q 048772          111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQG-MEKLMNLR  188 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~  188 (333)
                      ..+.++++++.+     ..+|..+.  +.++.|++++|.++.+|. .++++++|++|++++ +.+..+|.. +.++++|+
T Consensus        17 ~~~~l~~~~~~l-----~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~   88 (270)
T 2o6q_A           17 NKNSVDCSSKKL-----TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLE   88 (270)
T ss_dssp             TTTEEECTTSCC-----SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCC
T ss_pred             CCCEEEccCCCC-----CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCC
Confidence            478899999988     67776554  679999999999998885 789999999999999 778888876 47899999


Q ss_pred             eeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcc
Q 048772          189 HLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKE  267 (333)
Q Consensus       189 ~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~  267 (333)
                      +|++++|. +..+|.. ++.+++|++|++.++....       .....+..+++|+. |++.+..    ........+..
T Consensus        89 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~-L~Ls~n~----l~~~~~~~~~~  155 (270)
T 2o6q_A           89 TLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKS-------LPPRVFDSLTKLTY-LSLGYNE----LQSLPKGVFDK  155 (270)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSSC----CCCCCTTTTTT
T ss_pred             EEECCCCc-CCcCCHhHcccccCCCEEECCCCccCe-------eCHHHhCcCcCCCE-EECCCCc----CCccCHhHccC
Confidence            99999998 7777754 7899999999998776554       22334566677776 7776632    22223345788


Q ss_pred             cCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhh
Q 048772          268 KKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKE  326 (333)
Q Consensus       268 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~  326 (333)
                      +++|+.|+++.|.....            ....+..   +++|++|++++|.+.. +|.
T Consensus       156 l~~L~~L~L~~n~l~~~------------~~~~~~~---l~~L~~L~L~~N~l~~-~~~  198 (270)
T 2o6q_A          156 LTSLKELRLYNNQLKRV------------PEGAFDK---LTELKTLKLDNNQLKR-VPE  198 (270)
T ss_dssp             CTTCCEEECCSSCCSCC------------CTTTTTT---CTTCCEEECCSSCCSC-CCT
T ss_pred             CcccceeEecCCcCcEe------------ChhHhcc---CCCcCEEECCCCcCCc-CCH
Confidence            99999999998853222            1223455   7899999999998887 665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.64  E-value=6.9e-16  Score=148.02  Aligned_cols=195  Identities=16%  Similarity=0.094  Sum_probs=110.0

Q ss_pred             hhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccchh-hhccccCcEEeccCCCCCCc--CC
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELPET-CCELINLETLEINRCTRLKR--LP  178 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~--lp  178 (333)
                      +..|.++++|++|++++|.+     ..++ ..+..+++|++|++++|.++.+|.. ++++++|++|++++ +.+..  .|
T Consensus        43 ~~~~~~l~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~  116 (549)
T 2z81_A           43 HGDLRACANLQVLILKSSRI-----NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG-NPYQTLGVT  116 (549)
T ss_dssp             SSTTSSCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT-CCCSSSCSS
T ss_pred             hhhhhcCCcccEEECCCCCc-----CccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC-Ccccccchh
Confidence            44556666777777777766     3333 4566677777777777776666543 66777777777776 44543  34


Q ss_pred             hhhhcCCCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCc
Q 048772          179 QGMEKLMNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANV  257 (333)
Q Consensus       179 ~~~~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~  257 (333)
                      ..++++++|++|++++|..+..+| ..++++++|++|++.++....       .....+..+++|+. |++.....    
T Consensus       117 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~l~~l~~L~~-L~l~~n~~----  184 (549)
T 2z81_A          117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-------YQSQSLKSIRDIHH-LTLHLSES----  184 (549)
T ss_dssp             CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-------ECTTTTTTCSEEEE-EEEECSBS----
T ss_pred             hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-------cChhhhhccccCce-EecccCcc----
Confidence            556667777777776665455555 346667777777766655432       23334455555554 55554221    


Q ss_pred             hhhhhh-cCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhH
Q 048772          258 DEAKHV-DLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWV  328 (333)
Q Consensus       258 ~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~  328 (333)
                       ...+. .+..+++|+.|+++.|...+.....         ......   +++|+.|++.++......|..+
T Consensus       185 -~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~~~~---~~~L~~L~l~~n~l~~~~~~~l  243 (549)
T 2z81_A          185 -AFLLEIFADILSSVRYLELRDTNLARFQFSP---------LPVDEV---SSPMKKLAFRGSVLTDESFNEL  243 (549)
T ss_dssp             -TTHHHHHHHSTTTBSEEEEESCBCTTCCCCC---------CSSCCC---CCCCCEEEEESCEEEHHHHHHH
T ss_pred             -cccchhhHhhcccccEEEccCCccccccccc---------cchhhh---hhcccceeccccccchhHHHHH
Confidence             11111 1234677777777776533221100         001122   5678888888776654344444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.63  E-value=5.2e-17  Score=146.19  Aligned_cols=164  Identities=16%  Similarity=0.148  Sum_probs=75.9

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCC-cCc--ccchhhhccccCcEEeccCCCCCCc--
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWL-RIK--ELPETCCELINLETLEINRCTRLKR--  176 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~-~i~--~lp~~i~~L~~L~~L~l~~~~~~~~--  176 (333)
                      ++..+..+++|++|++++|.+.    ...|..+..+++|++|++++| .++  .+|..+.++++|++|++++|..+..  
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~----~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~  185 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLS----DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH  185 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCC----HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred             HHHHHhhCCCCCEEeCcCcccC----HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence            3444455555555555555441    233444555555555555555 344  2444455555555555555323432  


Q ss_pred             CChhhhcCC-CCCeeeccccc-cc--ccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccC
Q 048772          177 LPQGMEKLM-NLRHLIIMNHV-YL--EYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLG  252 (333)
Q Consensus       177 lp~~~~~L~-~L~~L~l~~~~-~l--~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~  252 (333)
                      +|..+..++ +|++|++++|. .+  ..+|..++.+++|++|++.++....      ...+..+..+++|+. |++.+..
T Consensus       186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~------~~~~~~l~~l~~L~~-L~l~~~~  258 (336)
T 2ast_B          186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK------NDCFQEFFQLNYLQH-LSLSRCY  258 (336)
T ss_dssp             HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC------GGGGGGGGGCTTCCE-EECTTCT
T ss_pred             HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC------HHHHHHHhCCCCCCE-eeCCCCC
Confidence            344455555 55555555553 12  2334444555555555555444211      223334444455554 5554432


Q ss_pred             CCCCchhhhhhcCcccCCCCceEEEec
Q 048772          253 DLANVDEAKHVDLKEKKNLDRLELWFD  279 (333)
Q Consensus       253 ~~~~~~~~~~~~l~~l~~L~~L~l~~~  279 (333)
                      .+   .......++++++|+.|++++|
T Consensus       259 ~~---~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          259 DI---IPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TC---CGGGGGGGGGCTTCCEEECTTS
T ss_pred             CC---CHHHHHHHhcCCCCCEEeccCc
Confidence            11   1122233445555555555533

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.63  E-value=1.1e-15  Score=145.65  Aligned_cols=124  Identities=15%  Similarity=0.167  Sum_probs=89.5

Q ss_pred             HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchhhhccccCc
Q 048772           86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPETCCELINLE  164 (333)
Q Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~  164 (333)
                      .++.+.+.+... ....+..|..+++|++|++++|.+     ..+ |..++.+++|++|++++|.++.+|..  .+++|+
T Consensus        22 ~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~   93 (520)
T 2z7x_B           22 KTTILNISQNYI-SELWTSDILSLSKLRILIISHNRI-----QYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK   93 (520)
T ss_dssp             TCSEEECCSSCC-CCCCHHHHTTCTTCCEEECCSSCC-----CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred             cccEEECCCCcc-cccChhhccccccccEEecCCCcc-----CCcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence            444444444332 233456778888899999998887     444 66788888999999999888888876  788899


Q ss_pred             EEeccCCCCCCc--CChhhhcCCCCCeeecccccccccCchhhcCCCCC--CccceEEeCC
Q 048772          165 TLEINRCTRLKR--LPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGL--RTLSEFVVGR  221 (333)
Q Consensus       165 ~L~l~~~~~~~~--lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L--~~L~~~~~~~  221 (333)
                      +|++++ +.+..  +|..++++++|++|++++|. +..  ..++.+++|  ++|++..+..
T Consensus        94 ~L~L~~-N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           94 HLDLSF-NAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             EEECCS-SCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred             EEeccC-CccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccc
Confidence            999988 55654  57788888899998888876 333  235556666  6776666544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.63  E-value=6.6e-16  Score=145.73  Aligned_cols=154  Identities=23%  Similarity=0.262  Sum_probs=122.6

Q ss_pred             ccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772          110 TCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-MEKLMN  186 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~  186 (333)
                      +.+++|++++|.+     ..+ |..+..+++|++|++++|.++.+ |..++++++|++|++++ +.+..+|.. +.++++
T Consensus        32 ~~l~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~  105 (477)
T 2id5_A           32 TETRLLDLGKNRI-----KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSN  105 (477)
T ss_dssp             TTCSEEECCSSCC-----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTTSSTTCTT
T ss_pred             CCCcEEECCCCcc-----ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-CcCCccCcccccCCCC
Confidence            5799999999998     555 46789999999999999999877 68899999999999999 778888865 789999


Q ss_pred             CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772          187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK  266 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~  266 (333)
                      |++|++++|......|..++++++|++|++.++....       .....+..+++|+. |++.+..    ........+.
T Consensus       106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~-L~l~~n~----l~~~~~~~l~  173 (477)
T 2id5_A          106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-------ISHRAFSGLNSLEQ-LTLEKCN----LTSIPTEALS  173 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-------ECTTSSTTCTTCCE-EEEESCC----CSSCCHHHHT
T ss_pred             CCEEECCCCccccCChhHccccccCCEEECCCCccce-------eChhhccCCCCCCE-EECCCCc----CcccChhHhc
Confidence            9999999998444446679999999999998776543       22344566677776 7777632    2223344578


Q ss_pred             ccCCCCceEEEeccC
Q 048772          267 EKKNLDRLELWFDNV  281 (333)
Q Consensus       267 ~l~~L~~L~l~~~~~  281 (333)
                      .+++|+.|+++.|..
T Consensus       174 ~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          174 HLHGLIVLRLRHLNI  188 (477)
T ss_dssp             TCTTCCEEEEESCCC
T ss_pred             ccCCCcEEeCCCCcC
Confidence            899999999998854

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.63  E-value=8.8e-16  Score=147.29  Aligned_cols=179  Identities=18%  Similarity=0.253  Sum_probs=134.5

Q ss_pred             ccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772          110 TCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQG-MEKLMN  186 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~  186 (333)
                      +.|++|++++|.+     ..+ |..+..+++|++|++++|.++.+| ..++++++|++|++++ +.+..+|.. ++++++
T Consensus        26 ~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~   99 (549)
T 2z81_A           26 AAMKSLDLSFNKI-----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD-NHLSSLSSSWFGPLSS   99 (549)
T ss_dssp             TTCCEEECCSSCC-----CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCSCCHHHHTTCTT
T ss_pred             CCccEEECcCCcc-----CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC-CccCccCHHHhccCCC
Confidence            6899999999988     444 567888999999999999988776 6789999999999998 667777665 899999


Q ss_pred             CCeeecccccccc--cCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772          187 LRHLIIMNHVYLE--YMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD  264 (333)
Q Consensus       187 L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~  264 (333)
                      |++|++++|. +.  ..|..++++++|++|++.++....      ......+..+++|+. |++.+.    ...+..+..
T Consensus       100 L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~------~~~~~~~~~l~~L~~-L~L~~n----~l~~~~~~~  167 (549)
T 2z81_A          100 LKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFS------EIRRIDFAGLTSLNE-LEIKAL----SLRNYQSQS  167 (549)
T ss_dssp             CCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC------EECTTTTTTCCEEEE-EEEEET----TCCEECTTT
T ss_pred             CcEEECCCCc-ccccchhhhhhccCCccEEECCCCcccc------ccCHhhhhcccccCe-eeccCC----cccccChhh
Confidence            9999999987 55  346678999999999998876333      222345666777776 777763    233445677


Q ss_pred             CcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhc-cCCCCCCCceeeEEeeecChh
Q 048772          265 LKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSV-RVCLLWDNCHPLKYSRYGIWI  322 (333)
Q Consensus       265 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~  322 (333)
                      ++.+++|++|+++++..     ..        ++..+ ..   +++|+.|++++|.+.+
T Consensus       168 l~~l~~L~~L~l~~n~~-----~~--------~~~~~~~~---l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          168 LKSIRDIHHLTLHLSES-----AF--------LLEIFADI---LSSVRYLELRDTNLAR  210 (549)
T ss_dssp             TTTCSEEEEEEEECSBS-----TT--------HHHHHHHS---TTTBSEEEEESCBCTT
T ss_pred             hhccccCceEecccCcc-----cc--------cchhhHhh---cccccEEEccCCcccc
Confidence            88889999999987742     11        22222 34   6789999999887765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.62  E-value=1.3e-15  Score=147.56  Aligned_cols=172  Identities=15%  Similarity=0.180  Sum_probs=107.3

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN  186 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~  186 (333)
                      ..++.|+.|++++|.+     ..+| .+..+++|+.|+|++|.++.+|. ++.+++|+.|+|++ +.+..+| .+..|++
T Consensus        40 ~~L~~L~~L~l~~n~i-----~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~-N~l~~l~-~l~~l~~  110 (605)
T 1m9s_A           40 NELNSIDQIIANNSDI-----KSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE-NKIKDLS-SLKDLKK  110 (605)
T ss_dssp             HHHTTCCCCBCTTCCC-----CCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS-SCCCCCT-TSTTCTT
T ss_pred             hcCCCCCEEECcCCCC-----CCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC-CCCCCCh-hhccCCC
Confidence            4567777777777776     5554 46777777777777777776665 67777777777777 5566665 5677777


Q ss_pred             CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772          187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK  266 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~  266 (333)
                      |++|++++|. +..+| .++.|++|+.|++..+....         +..+..+++|+. |++....-    .+. +. +.
T Consensus       111 L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~---------l~~l~~l~~L~~-L~Ls~N~l----~~~-~~-l~  172 (605)
T 1m9s_A          111 LKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD---------ITVLSRLTKLDT-LSLEDNQI----SDI-VP-LA  172 (605)
T ss_dssp             CCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCC---------CGGGGSCTTCSE-EECCSSCC----CCC-GG-GT
T ss_pred             CCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCC---------chhhcccCCCCE-EECcCCcC----CCc-hh-hc
Confidence            7777777776 55553 46777777777776665443         134555566665 66654221    111 11 66


Q ss_pred             ccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772          267 EKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI  322 (333)
Q Consensus       267 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~  322 (333)
                      .+++|+.|+|+.|.+..             + ..+..   +++|+.|+|++|.+..
T Consensus       173 ~l~~L~~L~Ls~N~i~~-------------l-~~l~~---l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHISD-------------L-RALAG---LKNLDVLELFSQECLN  211 (605)
T ss_dssp             TCTTCCEEECCSSCCCB-------------C-GGGTT---CTTCSEEECCSEEEEC
T ss_pred             cCCCCCEEECcCCCCCC-------------C-hHHcc---CCCCCEEEccCCcCcC
Confidence            67777777777663211             1 23444   6677777777765544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.62  E-value=7e-16  Score=149.72  Aligned_cols=109  Identities=19%  Similarity=0.280  Sum_probs=94.7

Q ss_pred             hcccccceEeeccccccccCCCcchH-hhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcC
Q 048772          108 QFTCLRALRICGENVWEIGNSKIPKA-MKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKL  184 (333)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L  184 (333)
                      .++.++.++++++.+     ..+|.. +..+++|++|++++|.++.+| ..++.+++|++|++++ +.+..+|. .++++
T Consensus        49 ~l~~l~~l~l~~~~l-----~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l  122 (597)
T 3oja_B           49 TLNNQKIVTFKNSTM-----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNV  122 (597)
T ss_dssp             GGCCCSEEEESSCEE-----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred             cCCCceEEEeeCCCC-----CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC-CcCCCCCHHHHcCC
Confidence            468899999999998     777765 688999999999999999877 4899999999999999 56777765 47999


Q ss_pred             CCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCC
Q 048772          185 MNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTG  223 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~  223 (333)
                      ++|++|++++|. +..+|.. ++.+++|++|++.++....
T Consensus       123 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~  161 (597)
T 3oja_B          123 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER  161 (597)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence            999999999998 7888877 5999999999998876554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.62  E-value=2.7e-15  Score=143.03  Aligned_cols=105  Identities=20%  Similarity=0.214  Sum_probs=93.5

Q ss_pred             ccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772          110 TCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQGMEKLMNL  187 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L  187 (333)
                      +.|++|++++|.+     ..++ ..+..+++|++|++++|.++.+ |..++++++|++|++++ +.+..+|..  .+++|
T Consensus        21 ~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~--~l~~L   92 (520)
T 2z7x_B           21 QKTTILNISQNYI-----SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-NKLVKISCH--PTVNL   92 (520)
T ss_dssp             TTCSEEECCSSCC-----CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS-SCCCEEECC--CCCCC
T ss_pred             ccccEEECCCCcc-----cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC-CceeecCcc--ccCCc
Confidence            7899999999998     5554 6799999999999999999977 67999999999999999 778899987  89999


Q ss_pred             Ceeeccccccccc--CchhhcCCCCCCccceEEeCCCC
Q 048772          188 RHLIIMNHVYLEY--MPRGIERLTGLRTLSEFVVGRTG  223 (333)
Q Consensus       188 ~~L~l~~~~~l~~--~p~~i~~L~~L~~L~~~~~~~~~  223 (333)
                      ++|++++|. +..  +|..++++++|++|++.++....
T Consensus        93 ~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           93 KHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             SEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             cEEeccCCc-cccccchhhhccCCcceEEEecCcccch
Confidence            999999998 554  67889999999999999877543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.62  E-value=3.2e-15  Score=135.06  Aligned_cols=105  Identities=21%  Similarity=0.326  Sum_probs=54.9

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM  185 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~  185 (333)
                      +..+++|++|++++|.+     ..+|. +..+++|++|++++|.++.+| .++++++|++|++++ +.+..+|. +..++
T Consensus        62 ~~~~~~L~~L~l~~n~i-----~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~-n~i~~~~~-~~~l~  132 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQI-----TDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNE-DNISDISP-LANLT  132 (347)
T ss_dssp             GGGCTTCCEEECCSSCC-----CCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTT-SCCCCCGG-GTTCT
T ss_pred             hhhcCCccEEEccCCcc-----ccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcC-CcccCchh-hccCC
Confidence            34455555666655555     44443 555555555555555555544 355555555555555 44555544 55555


Q ss_pred             CCCeeecccccccccCchhhcCCCCCCccceEEeC
Q 048772          186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVG  220 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~  220 (333)
                      +|++|++++|.....+| .++.+++|++|++.++.
T Consensus       133 ~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~  166 (347)
T 4fmz_A          133 KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK  166 (347)
T ss_dssp             TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC
T ss_pred             ceeEEECCCCCCccccc-chhhCCCCcEEEecCCC
Confidence            55555555554333332 25555555555554443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.62  E-value=6.8e-16  Score=149.86  Aligned_cols=112  Identities=25%  Similarity=0.339  Sum_probs=76.8

Q ss_pred             hhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-  180 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-  180 (333)
                      +..|..+++|++|++++|.+     ..+|..+..+++|++|++++|.+..+ |..++++++|++|++++|.....+|.. 
T Consensus       271 ~~~~~~l~~L~~L~l~~n~l-----~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  345 (606)
T 3t6q_A          271 SNTFHCFSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC  345 (606)
T ss_dssp             TTTTTTCTTCSEEECTTSCC-----SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred             HHHhccccCCCEEeccCCcc-----CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence            44567778888888888877     67777777788888888888877765 456777777777777774433355543 


Q ss_pred             hhcCCCCCeeecccccccccC---chhhcCCCCCCccceEEeC
Q 048772          181 MEKLMNLRHLIIMNHVYLEYM---PRGIERLTGLRTLSEFVVG  220 (333)
Q Consensus       181 ~~~L~~L~~L~l~~~~~l~~~---p~~i~~L~~L~~L~~~~~~  220 (333)
                      ++++++|++|++++|. +..+   |..++.+++|++|++.++.
T Consensus       346 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~  387 (606)
T 3t6q_A          346 LENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE  387 (606)
T ss_dssp             TTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred             hhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCc
Confidence            6677777777777766 3333   4456667777777665554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.62  E-value=7.3e-16  Score=138.67  Aligned_cols=190  Identities=17%  Similarity=0.139  Sum_probs=114.4

Q ss_pred             hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCC---c
Q 048772          101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLK---R  176 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~---~  176 (333)
                      ..+..+.++++|++|++++|.+     ..+|..+.  ++|++|++++|.++.+|. .++++++|++|++++ +.+.   .
T Consensus        93 ~~~~~~~~l~~L~~L~L~~n~l-----~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~  164 (332)
T 2ft3_A           93 IHEKAFSPLRKLQKLYISKNHL-----VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG-NPLENSGF  164 (332)
T ss_dssp             ECGGGSTTCTTCCEEECCSSCC-----CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS-CCCBGGGS
T ss_pred             cCHhHhhCcCCCCEEECCCCcC-----CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC-CccccCCC
Confidence            3466788899999999999998     66676554  788888888888887774 478888888888887 4443   3


Q ss_pred             CChhhhcC--------------------CCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhh
Q 048772          177 LPQGMEKL--------------------MNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEA  235 (333)
Q Consensus       177 lp~~~~~L--------------------~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~  235 (333)
                      .|..+..+                    ++|++|++++|. +..++ ..++.+++|++|++.++....       .....
T Consensus       165 ~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~-------~~~~~  236 (332)
T 2ft3_A          165 EPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRM-------IENGS  236 (332)
T ss_dssp             CTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCC-------CCTTG
T ss_pred             CcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCc-------CChhH
Confidence            34444444                    345555555554 33333 446666677777666555433       12223


Q ss_pred             hcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEE
Q 048772          236 LKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKY  315 (333)
Q Consensus       236 L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l  315 (333)
                      +..++.|+. |++.+..     ...++..+..+++|+.|++++|.......     .    .+....+....++|+.|++
T Consensus       237 ~~~l~~L~~-L~L~~N~-----l~~lp~~l~~l~~L~~L~l~~N~l~~~~~-----~----~~~~~~~~~~~~~l~~L~l  301 (332)
T 2ft3_A          237 LSFLPTLRE-LHLDNNK-----LSRVPAGLPDLKLLQVVYLHTNNITKVGV-----N----DFCPVGFGVKRAYYNGISL  301 (332)
T ss_dssp             GGGCTTCCE-EECCSSC-----CCBCCTTGGGCTTCCEEECCSSCCCBCCT-----T----SSSCSSCCSSSCCBSEEEC
T ss_pred             hhCCCCCCE-EECCCCc-----CeecChhhhcCccCCEEECCCCCCCccCh-----h----HccccccccccccccceEe
Confidence            445555554 5555421     12445567777778888887775332211     1    1111111001356788888


Q ss_pred             eeecCh
Q 048772          316 SRYGIW  321 (333)
Q Consensus       316 ~~~~~~  321 (333)
                      .+|...
T Consensus       302 ~~N~~~  307 (332)
T 2ft3_A          302 FNNPVP  307 (332)
T ss_dssp             CSSSSC
T ss_pred             ecCccc
Confidence            877654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.61  E-value=3.1e-15  Score=140.87  Aligned_cols=146  Identities=21%  Similarity=0.260  Sum_probs=103.3

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM  185 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~  185 (333)
                      +..+++|++|++++|.+     ..+|. +..+++|++|++++|.+..+|. ++++++|++|++++ +.+..+|. +.+++
T Consensus        64 ~~~l~~L~~L~Ls~n~l-----~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~-n~l~~~~~-~~~l~  134 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQL-----TDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN-NQITDIDP-LKNLT  134 (466)
T ss_dssp             GGGCTTCCEEECCSSCC-----CCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG-GTTCT
T ss_pred             hhhhcCCCEEECCCCcc-----CCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC-CCCCCChH-HcCCC
Confidence            56788999999999988     66665 8889999999999999888877 88999999999998 56788775 88899


Q ss_pred             CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772          186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL  265 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l  265 (333)
                      +|++|++++|. +..+| .++.+++|++|++.. ....         +..+..+++|+. |++.+..- ..     ...+
T Consensus       135 ~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~-~~~~---------~~~~~~l~~L~~-L~l~~n~l-~~-----~~~l  195 (466)
T 1o6v_A          135 NLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN-QVTD---------LKPLANLTTLER-LDISSNKV-SD-----ISVL  195 (466)
T ss_dssp             TCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE-SCCC---------CGGGTTCTTCCE-EECCSSCC-CC-----CGGG
T ss_pred             CCCEEECCCCc-cCCCh-hhccCCcccEeecCC-cccC---------chhhccCCCCCE-EECcCCcC-CC-----Chhh
Confidence            99999999887 66665 377888888887743 2111         122555555554 55554321 11     1224


Q ss_pred             cccCCCCceEEEec
Q 048772          266 KEKKNLDRLELWFD  279 (333)
Q Consensus       266 ~~l~~L~~L~l~~~  279 (333)
                      ..+++|++|+++.|
T Consensus       196 ~~l~~L~~L~l~~n  209 (466)
T 1o6v_A          196 AKLTNLESLIATNN  209 (466)
T ss_dssp             GGCTTCSEEECCSS
T ss_pred             ccCCCCCEEEecCC
Confidence            55555666655554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.60  E-value=1.4e-15  Score=153.31  Aligned_cols=192  Identities=15%  Similarity=0.103  Sum_probs=130.1

Q ss_pred             cccccceEeeccccccccCCCc-chHhhcccccCeeeccCCc-Cccc-chhhhccccCcEEeccCCCCCCcC-ChhhhcC
Q 048772          109 FTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLR-IKEL-PETCCELINLETLEINRCTRLKRL-PQGMEKL  184 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~-i~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~~~~L  184 (333)
                      .+.+++|++++|.+     ..+ |..+.++++|++|++++|. +..+ |..++++++|++|++++ +.+..+ |..++++
T Consensus        23 p~~l~~LdLs~N~i-----~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~p~~~~~l   96 (844)
T 3j0a_A           23 LNTTERLLLSFNYI-----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS-SKIYFLHPDAFQGL   96 (844)
T ss_dssp             CTTCCEEEEESCCC-----CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT-CCCCEECTTSSCSC
T ss_pred             CCCcCEEECCCCcC-----CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC-CcCcccCHhHccCC
Confidence            46789999999887     333 5678889999999999885 5566 67888999999999998 556654 7788899


Q ss_pred             CCCCeeecccccccccCchh--hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhh
Q 048772          185 MNLRHLIIMNHVYLEYMPRG--IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKH  262 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~~p~~--i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~  262 (333)
                      ++|++|++++|.....+|..  ++++++|++|++..+....      ......++++++|+. |++.+..    ..+..+
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~------~~~~~~~~~L~~L~~-L~Ls~N~----i~~~~~  165 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS------LYLHPSFGKLNSLKS-IDFSSNQ----IFLVCE  165 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC------CCCCGGGGTCSSCCE-EEEESSC----CCCCCS
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc------cccchhHhhCCCCCE-EECCCCc----CCeeCH
Confidence            99999999988743445655  8889999999988877654      222245667777776 7776632    222334


Q ss_pred             hcCccc--CCCCceEEEeccCCCCCCCccchHHHHHHhhhccCC---CCCCCceeeEEeeecChhhhhhhHh
Q 048772          263 VDLKEK--KNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVC---LLWDNCHPLKYSRYGIWIVWKEWVM  329 (333)
Q Consensus       263 ~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~~~p~w~~  329 (333)
                      ..+..+  ++|+.|+++.|...+..            +..+..+   .....|+.|++++|.....+|.++.
T Consensus       166 ~~l~~l~~~~L~~L~L~~n~l~~~~------------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  225 (844)
T 3j0a_A          166 HELEPLQGKTLSFFSLAANSLYSRV------------SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS  225 (844)
T ss_dssp             GGGHHHHHCSSCCCEECCSBSCCCC------------CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred             HHcccccCCccceEECCCCcccccc------------ccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence            445555  78888999877644321            1122220   0011488888888865443555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.60  E-value=1.4e-15  Score=149.58  Aligned_cols=132  Identities=17%  Similarity=0.135  Sum_probs=98.3

Q ss_pred             HHHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccC
Q 048772           85 TASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINL  163 (333)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L  163 (333)
                      ..++.+.+.+.. .....+..|.+++.|++|++++|.+.    ...|..++++++|++|++++|.++.+|. .++++++|
T Consensus        25 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL   99 (680)
T ss_dssp             TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence            344555554433 22334556788899999999998872    3346678889999999999998888886 58899999


Q ss_pred             cEEeccCCCCCCcCC-hhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCC
Q 048772          164 ETLEINRCTRLKRLP-QGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       164 ~~L~l~~~~~~~~lp-~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~  222 (333)
                      ++|++++ +.+..+| ..++++++|++|++++|......|..++++++|++|++..+...
T Consensus       100 ~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A          100 TELHLMS-NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             SEEECCS-SCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred             CEEECCC-CccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence            9999998 5677766 56888999999999988743444556888888998888766544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.60  E-value=1.1e-15  Score=143.15  Aligned_cols=121  Identities=11%  Similarity=0.021  Sum_probs=83.2

Q ss_pred             CChhhhcCCCCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCC
Q 048772          177 LPQGMEKLMNLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLA  255 (333)
Q Consensus       177 lp~~~~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~  255 (333)
                      .|..++++++|++|++++|. +..+ |..++.+++|++|++.++....       .....+..++.|+. |++.+.    
T Consensus       291 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~-L~Ls~N----  357 (455)
T 3v47_A          291 LKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGS-------IDSRMFENLDKLEV-LDLSYN----  357 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCE-------ECGGGGTTCTTCCE-EECCSS----
T ss_pred             chhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCC-------cChhHhcCcccCCE-EECCCC----
Confidence            35567788888888888887 4444 5568888888888887766543       33445666777776 777763    


Q ss_pred             CchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhh
Q 048772          256 NVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWK  325 (333)
Q Consensus       256 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p  325 (333)
                      ...+..+..+..+++|++|++++|...+.            ....+..   +++|+.|++++|.+...+|
T Consensus       358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~---l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          358 HIRALGDQSFLGLPNLKELALDTNQLKSV------------PDGIFDR---LTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCC------------CTTTTTT---CTTCCEEECCSSCBCCCTT
T ss_pred             cccccChhhccccccccEEECCCCccccC------------CHhHhcc---CCcccEEEccCCCcccCCC
Confidence            23344466788889999999988753322            1123455   7889999999987754356

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.60  E-value=1.9e-16  Score=141.27  Aligned_cols=191  Identities=17%  Similarity=0.132  Sum_probs=142.1

Q ss_pred             ccceEeeccccccccCCCcchHhh-------cccccCeeeccCCcCc-ccchhh--hccccCcEEeccCCCCCCcCChhh
Q 048772          112 LRALRICGENVWEIGNSKIPKAMK-------NLIHLRFLKLSWLRIK-ELPETC--CELINLETLEINRCTRLKRLPQGM  181 (333)
Q Consensus       112 L~~L~l~~~~~~~~~~~~lp~~~~-------~l~~L~~L~l~~~~i~-~lp~~i--~~L~~L~~L~l~~~~~~~~lp~~~  181 (333)
                      |+.|++++|.+..   ..+|..+.       ++++|++|++++|.++ .+|..+  +.+++|++|++++ +.+..+|..+
T Consensus        65 L~~L~L~~n~l~~---~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~  140 (312)
T 1wwl_A           65 IKSLSLKRLTVRA---ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN-VSWATRDAWL  140 (312)
T ss_dssp             HHHCCCCEEEEEE---EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES-CBCSSSSSHH
T ss_pred             HhhcccccccccC---CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC-CCCcchhHHH
Confidence            8899999988732   34666665       7999999999999988 788876  8999999999999 7788889888


Q ss_pred             hcC-----CCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhh--cCcccccceeEEcccCC
Q 048772          182 EKL-----MNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEAL--KGMNHLRGLLKIRMLGD  253 (333)
Q Consensus       182 ~~L-----~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L--~~L~~L~~~L~~~~~~~  253 (333)
                      +.+     ++|++|++++|. +..+| ..++++++|++|++.++....     ....+..+  ..+++|+. |++.+..-
T Consensus       141 ~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~~~~~l~~L~~-L~L~~N~l  213 (312)
T 1wwl_A          141 AELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELG-----ERGLISALCPLKFPTLQV-LALRNAGM  213 (312)
T ss_dssp             HHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCH-----HHHHHHHSCTTSCTTCCE-EECTTSCC
T ss_pred             HHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCc-----chHHHHHHHhccCCCCCE-EECCCCcC
Confidence            888     999999999998 66666 679999999999998776432     01123333  67788886 88876421


Q ss_pred             CCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHh
Q 048772          254 LANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVM  329 (333)
Q Consensus       254 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~  329 (333)
                       ..........+..+++|+.|++++|...+...           ...+..   +++|+.|++++|.+.. +|.++.
T Consensus       214 -~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~~---l~~L~~L~Ls~N~l~~-ip~~~~  273 (312)
T 1wwl_A          214 -ETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----------APSCDW---PSQLNSLNLSFTGLKQ-VPKGLP  273 (312)
T ss_dssp             -CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----------CSCCCC---CTTCCEEECTTSCCSS-CCSSCC
T ss_pred             -cchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----------hhhhhh---cCCCCEEECCCCccCh-hhhhcc
Confidence             21112222344678999999999886433210           122333   6899999999999987 888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.60  E-value=9.7e-16  Score=148.80  Aligned_cols=113  Identities=19%  Similarity=0.119  Sum_probs=61.9

Q ss_pred             hhHhhhcccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCccc---chhhhccccCcEEeccCCCCCC-cC
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKEL---PETCCELINLETLEINRCTRLK-RL  177 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l---p~~i~~L~~L~~L~l~~~~~~~-~l  177 (333)
                      +..+..+++|++|++++|.+.    ..+|. .+..+++|++|++++|.+..+   |..++++++|++|++++ +.+. ..
T Consensus       318 ~~~~~~l~~L~~L~l~~n~~~----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~  392 (606)
T 3t6q_A          318 QISASNFPSLTHLSIKGNTKR----LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY-NEPLSLK  392 (606)
T ss_dssp             GGCGGGCTTCSEEECCSCSSC----CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS-CSCEEEC
T ss_pred             hhhhhccCcCCEEECCCCCcc----cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC-CcCCcCC
Confidence            445666777777777777652    23333 256666666666666665544   44566666666666666 3333 23


Q ss_pred             ChhhhcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeC
Q 048772          178 PQGMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVG  220 (333)
Q Consensus       178 p~~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~  220 (333)
                      |..++++++|++|++++|......|.. ++.+++|++|++.++.
T Consensus       393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  436 (606)
T 3t6q_A          393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL  436 (606)
T ss_dssp             TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred             HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence            445555566666666555522222222 5555555555554443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.60  E-value=4.5e-16  Score=149.89  Aligned_cols=130  Identities=22%  Similarity=0.260  Sum_probs=102.4

Q ss_pred             HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccC
Q 048772           86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINL  163 (333)
Q Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L  163 (333)
                      .++.+.+.+... ....+..|.++++|++|++++|.+     ..++ ..+.++++|++|++++|.++.+| ..++++++|
T Consensus        29 ~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i-----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (570)
T 2z63_A           29 STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (570)
T ss_dssp             SCCEEECCSCCC-CEECTTTTTTCSSCCEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             cccEEEccCCcc-CccChhHhhCCCCceEEECCCCcC-----CccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence            344455544332 223355678899999999999988     5554 56888999999999999998776 688999999


Q ss_pred             cEEeccCCCCCCcCCh-hhhcCCCCCeeecccccccc--cCchhhcCCCCCCccceEEeCCCC
Q 048772          164 ETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLE--YMPRGIERLTGLRTLSEFVVGRTG  223 (333)
Q Consensus       164 ~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~~~~~  223 (333)
                      ++|++++ +.+..+|. .++++++|++|++++|. +.  .+|..++++++|++|++.++....
T Consensus       103 ~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A          103 QKLVAVE-TNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             CEEECTT-SCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             ccccccc-cccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccce
Confidence            9999999 67888775 58999999999999997 44  478889999999999987766543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.60  E-value=4.8e-15  Score=133.93  Aligned_cols=177  Identities=18%  Similarity=0.206  Sum_probs=91.7

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh------
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ------  179 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~------  179 (333)
                      +..+++|++|++++|...    .. +..+..+++|++|++++|.+..++. ++.+++|++|++++ +.+..++.      
T Consensus       128 ~~~l~~L~~L~l~~n~~~----~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~l~~  200 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNL----SD-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY-NQIEDISPLASLTS  200 (347)
T ss_dssp             GTTCTTCCEEECTTCTTC----CC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT-SCCCCCGGGGGCTT
T ss_pred             hccCCceeEEECCCCCCc----cc-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC-CcccccccccCCCc
Confidence            566777777777777542    22 2336666666666666666665554 56666666666666 44555443      


Q ss_pred             ---------------hhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccc
Q 048772          180 ---------------GMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRG  244 (333)
Q Consensus       180 ---------------~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~  244 (333)
                                     .+..+++|++|++++|. +..+|. +..+++|++|++.++....         +..+..+++|+.
T Consensus       201 L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~---------~~~~~~l~~L~~  269 (347)
T 4fmz_A          201 LHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQISD---------INAVKDLTKLKM  269 (347)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCC---------CGGGTTCTTCCE
T ss_pred             cceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccCC---------ChhHhcCCCcCE
Confidence                           03444445555554444 344433 4455555555544443222         123344444444


Q ss_pred             eeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772          245 LLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI  322 (333)
Q Consensus       245 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~  322 (333)
                       |++.+..- ..     ...+..+++|+.|++++|.....            .++.+..   +++|+.|++++|.+..
T Consensus       270 -L~l~~n~l-~~-----~~~~~~l~~L~~L~L~~n~l~~~------------~~~~l~~---l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          270 -LNVGSNQI-SD-----ISVLNNLSQLNSLFLNNNQLGNE------------DMEVIGG---LTNLTTLFLSQNHITD  325 (347)
T ss_dssp             -EECCSSCC-CC-----CGGGGGCTTCSEEECCSSCCCGG------------GHHHHHT---CTTCSEEECCSSSCCC
T ss_pred             -EEccCCcc-CC-----ChhhcCCCCCCEEECcCCcCCCc------------ChhHhhc---cccCCEEEccCCcccc
Confidence             44443211 11     12345556666666665532111            2334455   6667777777776665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.60  E-value=3.2e-16  Score=134.38  Aligned_cols=102  Identities=20%  Similarity=0.288  Sum_probs=63.3

Q ss_pred             cccceEeeccccccccCCCcch-HhhcccccCeeeccCCc-Ccccch-hhhccccCcEEeccCCCCCCcCCh-hhhcCCC
Q 048772          111 CLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLR-IKELPE-TCCELINLETLEINRCTRLKRLPQ-GMEKLMN  186 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~-i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~  186 (333)
                      .|++|++++|.+     ..+|. .+..+++|++|++++|. ++.+|. .++++++|++|++++|+.++.+|. .+.++++
T Consensus        32 ~l~~L~l~~n~l-----~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~  106 (239)
T 2xwt_C           32 STQTLKLIETHL-----RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL  106 (239)
T ss_dssp             TCCEEEEESCCC-----SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred             cccEEEEeCCcc-----eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence            566666666666     44444 45666666777776665 666653 556666677777665455666553 4566666


Q ss_pred             CCeeecccccccccCchhhcCCCCCC---ccceEEe
Q 048772          187 LRHLIIMNHVYLEYMPRGIERLTGLR---TLSEFVV  219 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~~L~~L~---~L~~~~~  219 (333)
                      |++|++++|. +..+|. ++.+++|+   +|++.++
T Consensus       107 L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          107 LKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             CCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESC
T ss_pred             CCEEeCCCCC-Cccccc-cccccccccccEEECCCC
Confidence            6777666666 555665 56666665   6666555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=7.4e-16  Score=129.21  Aligned_cols=101  Identities=26%  Similarity=0.472  Sum_probs=48.0

Q ss_pred             cccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccchh-hhccccCcEEeccCCCCCCcCChh-hhcCCCC
Q 048772          111 CLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELPET-CCELINLETLEINRCTRLKRLPQG-MEKLMNL  187 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L  187 (333)
                      .|++|++++|.+     ..+|. .+..+++|++|++++|.++.+|.. ++.+++|++|++++ +.+..+|.. ++++++|
T Consensus        29 ~l~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L  102 (208)
T 2o6s_A           29 QTTYLDLETNSL-----KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQL  102 (208)
T ss_dssp             TCSEEECCSSCC-----CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred             CCcEEEcCCCcc-----CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC-CcCCccCHhHhcCccCC
Confidence            455555555554     33332 234455555555555555544432 34555555555555 344444433 3455555


Q ss_pred             CeeecccccccccCchh-hcCCCCCCccceEE
Q 048772          188 RHLIIMNHVYLEYMPRG-IERLTGLRTLSEFV  218 (333)
Q Consensus       188 ~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~  218 (333)
                      ++|++++|. +..+|.. ++.+++|++|++.+
T Consensus       103 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A          103 KELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCc-CcccCHhHhccCCcCCEEECCC
Confidence            555555554 3444332 34455555544443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.60  E-value=6.3e-16  Score=148.87  Aligned_cols=190  Identities=13%  Similarity=0.060  Sum_probs=131.9

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCC--hhhhcC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLP--QGMEKL  184 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~~~~L  184 (333)
                      ..+++|++|++++|.+...  ...|..+..+++|++|++++|.+..+|..++.+++|++|++++ +.+...+  ..+.++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l  420 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFK--GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSL  420 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEE--EEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT-SEEESCTTSCTTTTC
T ss_pred             ccCCCCCEEeCcCCccCcc--ccccccccccCccCEEECCCCccccccccccccCCCCEEEccC-CccccccchhhhhcC
Confidence            3566777777777776210  1125677888888888888888887776688888888888888 4455443  357788


Q ss_pred             CCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772          185 MNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD  264 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~  264 (333)
                      ++|++|++++|......|..++.+++|++|++.++....      ...+..+..+++|+. |++.+.    ...+..+..
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~p~~~~~l~~L~~-L~l~~n----~l~~~~~~~  489 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE------NFLPDIFTELRNLTF-LDLSQC----QLEQLSPTA  489 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG------GEECSCCTTCTTCCE-EECTTS----CCCEECTTT
T ss_pred             CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc------ccchhhhhcccCCCE-EECCCC----ccccCChhh
Confidence            888999988887445566678888888888887665431      123345666777776 777763    233445677


Q ss_pred             CcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhh
Q 048772          265 LKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWK  325 (333)
Q Consensus       265 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p  325 (333)
                      +..+++|++|++++|...+.            .+..+..   +++|+.|++++|.+...+|
T Consensus       490 ~~~l~~L~~L~l~~n~l~~~------------~~~~~~~---l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          490 FNSLSSLQVLNMASNQLKSV------------PDGIFDR---LTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TTTCTTCCEEECCSSCCSCC------------CTTTTTT---CTTCCEEECCSSCBCCCTT
T ss_pred             hhcccCCCEEeCCCCcCCCC------------CHHHhhc---ccCCcEEEecCCcccCCCc
Confidence            88899999999998854322            2234556   7889999999887643244

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.60  E-value=2.5e-15  Score=144.74  Aligned_cols=108  Identities=16%  Similarity=0.204  Sum_probs=59.7

Q ss_pred             hhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCC--h
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLP--Q  179 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~  179 (333)
                      +..|..+++|++|++++|.+     ..+ |..+..+++|++|++++|.++.+|..  .+++|++|++++ +.+..+|  .
T Consensus        69 ~~~~~~l~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~-N~l~~l~~p~  140 (562)
T 3a79_B           69 MPDISFLSELRVLRLSHNRI-----RSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSF-NDFDVLPVCK  140 (562)
T ss_dssp             GGGTTTCTTCCEEECCSCCC-----CEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCS-SCCSBCCCCG
T ss_pred             hhhhccCCCccEEECCCCCC-----CcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCC-CCccccCchH
Confidence            34555666666666666665     333 34456666666666666666666654  566666666666 4454433  4


Q ss_pred             hhhcCCCCCeeecccccccccCchhhcCCCCC--CccceEEeCC
Q 048772          180 GMEKLMNLRHLIIMNHVYLEYMPRGIERLTGL--RTLSEFVVGR  221 (333)
Q Consensus       180 ~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L--~~L~~~~~~~  221 (333)
                      .++++++|++|++++|. +..  ..++.+++|  ++|++..+..
T Consensus       141 ~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          141 EFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             GGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred             hhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccc
Confidence            56666666666666655 322  123334444  6666555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.58  E-value=1.1e-15  Score=136.66  Aligned_cols=182  Identities=13%  Similarity=0.080  Sum_probs=99.5

Q ss_pred             hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhc
Q 048772          104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEK  183 (333)
Q Consensus       104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~  183 (333)
                      ..+..+++|++|++++|.+     ..+++ +..+++|++|++++|.++.+|    ..++|++|++++ +.+..+|..  .
T Consensus        52 ~~~~~l~~L~~L~Ls~n~l-----~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~-n~l~~~~~~--~  118 (317)
T 3o53_A           52 ADLAPFTKLELLNLSSNVL-----YETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAAN-NNISRVSCS--R  118 (317)
T ss_dssp             HHHTTCTTCCEEECTTSCC-----EEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCS-SCCSEEEEC--C
T ss_pred             HHhhCCCcCCEEECCCCcC-----Ccchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECCC-CccCCcCcc--c
Confidence            3444555555555555544     22222 444555555555555544443    124555555555 344444432  3


Q ss_pred             CCCCCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhh-cCcccccceeEEcccCCCCCchhhh
Q 048772          184 LMNLRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEAL-KGMNHLRGLLKIRMLGDLANVDEAK  261 (333)
Q Consensus       184 L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L-~~L~~L~~~L~~~~~~~~~~~~~~~  261 (333)
                      +++|++|++++|. +..++ ..++.+++|++|++.++....       ..+..+ ..++.|+. |++.+..-    . ..
T Consensus       119 ~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~~l~~L~~-L~L~~N~l----~-~~  184 (317)
T 3o53_A          119 GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDT-------VNFAELAASSDTLEH-LNLQYNFI----Y-DV  184 (317)
T ss_dssp             CSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCE-------EEGGGGGGGTTTCCE-EECTTSCC----C-EE
T ss_pred             cCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCc-------ccHHHHhhccCcCCE-EECCCCcC----c-cc
Confidence            5667777777776 44444 346777777777776655443       122222 24555665 66655221    1 11


Q ss_pred             hhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhh
Q 048772          262 HVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN  330 (333)
Q Consensus       262 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~  330 (333)
                       .....+++|++|++++|...     .        ++..+..   +++|+.|++++|.+.. +|.++..
T Consensus       185 -~~~~~l~~L~~L~Ls~N~l~-----~--------l~~~~~~---l~~L~~L~L~~N~l~~-l~~~~~~  235 (317)
T 3o53_A          185 -KGQVVFAKLKTLDLSSNKLA-----F--------MGPEFQS---AAGVTWISLRNNKLVL-IEKALRF  235 (317)
T ss_dssp             -ECCCCCTTCCEEECCSSCCC-----E--------ECGGGGG---GTTCSEEECTTSCCCE-ECTTCCC
T ss_pred             -ccccccccCCEEECCCCcCC-----c--------chhhhcc---cCcccEEECcCCcccc-hhhHhhc
Confidence             22334778888888877421     1        3334555   7789999999888887 7876643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.58  E-value=4.7e-15  Score=123.30  Aligned_cols=150  Identities=18%  Similarity=0.227  Sum_probs=112.4

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCc-CChhhhcCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKR-LPQGMEKLM  185 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~-lp~~~~~L~  185 (333)
                      ..++.|+.|++++|.+     ..+| .+..+++|++|++++|.++.++ .+..+++|++|++++ +.+.. .|..++.++
T Consensus        41 ~~l~~L~~L~l~~n~i-----~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           41 AQMNSLTYITLANINV-----TDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMG-KDVTSDKIPNLSGLT  112 (197)
T ss_dssp             HHHHTCCEEEEESSCC-----SCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEEC-TTCBGGGSCCCTTCT
T ss_pred             hhcCCccEEeccCCCc-----cChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeEC-CccCcccChhhcCCC
Confidence            5678999999999998     7777 6889999999999999877665 688999999999999 55654 677899999


Q ss_pred             CCCeeecccccccccCchhhcCCCCCCccceEEeC-CCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772          186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVG-RTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD  264 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~-~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~  264 (333)
                      +|++|++++|......|..++.+++|++|++.++. ...         +..+..+++|+. |++.+..- ..    . ..
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~---------~~~l~~l~~L~~-L~l~~n~i-~~----~-~~  176 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD---------IMPLKTLPELKS-LNIQFDGV-HD----Y-RG  176 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC---------CGGGGGCSSCCE-EECTTBCC-CC----C-TT
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc---------cHhhcCCCCCCE-EECCCCCC-cC----h-HH
Confidence            99999999998444567789999999999988775 332         124555666665 66655321 11    1 15


Q ss_pred             CcccCCCCceEEEecc
Q 048772          265 LKEKKNLDRLELWFDN  280 (333)
Q Consensus       265 l~~l~~L~~L~l~~~~  280 (333)
                      +..+++|++|++++|.
T Consensus       177 l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          177 IEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             GGGCSSCCEEEECBC-
T ss_pred             hccCCCCCEEEeeCcc
Confidence            6667777777777664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=1.4e-15  Score=143.98  Aligned_cols=182  Identities=13%  Similarity=0.096  Sum_probs=102.0

Q ss_pred             hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhc
Q 048772          104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEK  183 (333)
Q Consensus       104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~  183 (333)
                      ..|..+++|++|++++|.+     ...++ ++.+++|++|++++|.++.+|.    .++|++|++++ +.+..+|..  .
T Consensus        52 ~~~~~l~~L~~L~Ls~N~l-----~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~-N~l~~~~~~--~  118 (487)
T 3oja_A           52 ADLAPFTKLELLNLSSNVL-----YETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN-NNISRVSCS--R  118 (487)
T ss_dssp             GGGTTCTTCCEEECTTSCC-----EEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS-SCCCCEEEC--C
T ss_pred             HHHhCCCCCCEEEeeCCCC-----CCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC-CcCCCCCcc--c
Confidence            3444555555555555554     22222 4445555555555555444442    14555555555 344444432  4


Q ss_pred             CCCCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhhc-CcccccceeEEcccCCCCCchhhh
Q 048772          184 LMNLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALK-GMNHLRGLLKIRMLGDLANVDEAK  261 (333)
Q Consensus       184 L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~-~L~~L~~~L~~~~~~~~~~~~~~~  261 (333)
                      +++|++|++++|. +..+ |..++.+++|++|++.++....       ..+..+. .++.|+. |++.+..-    .+ .
T Consensus       119 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~l~~~l~~L~~-L~Ls~N~l----~~-~  184 (487)
T 3oja_A          119 GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDT-------VNFAELAASSDTLEH-LNLQYNFI----YD-V  184 (487)
T ss_dssp             CSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCE-------EEGGGGGGGTTTCCE-EECTTSCC----CE-E
T ss_pred             cCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCC-------cChHHHhhhCCcccE-EecCCCcc----cc-c
Confidence            5677777777776 4443 4457777777777776665443       2233333 4556665 66665321    11 1


Q ss_pred             hhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhh
Q 048772          262 HVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN  330 (333)
Q Consensus       262 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~  330 (333)
                       ..+..+++|+.|++++|...+             ++..+..   +++|+.|++++|.+.. +|.++..
T Consensus       185 -~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~---l~~L~~L~Ls~N~l~~-lp~~l~~  235 (487)
T 3oja_A          185 -KGQVVFAKLKTLDLSSNKLAF-------------MGPEFQS---AAGVTWISLRNNKLVL-IEKALRF  235 (487)
T ss_dssp             -ECCCCCTTCCEEECCSSCCCE-------------ECGGGGG---GTTCSEEECTTSCCCE-ECTTCCC
T ss_pred             -cccccCCCCCEEECCCCCCCC-------------CCHhHcC---CCCccEEEecCCcCcc-cchhhcc
Confidence             234457788888888774221             3334555   7789999999888887 8887653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.57  E-value=9.6e-15  Score=137.11  Aligned_cols=169  Identities=17%  Similarity=0.144  Sum_probs=90.1

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM  185 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~  185 (333)
                      +..++.|++|++++|.+     ..+|  ++.+++|++|++++|.++.+|  ++++++|++|++++ +.+..+|  +++++
T Consensus        60 l~~l~~L~~L~Ls~n~l-----~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~-N~l~~l~--~~~l~  127 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNI-----TTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT-NKLTKLD--VSQNP  127 (457)
T ss_dssp             GGGCTTCSEEECCSSCC-----SCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS-SCCSCCC--CTTCT
T ss_pred             hcccCCCCEEEccCCcC-----CeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC-CcCCeec--CCCCC
Confidence            44555555555555555     3333  455555555555555555543  55555555555555 3444444  55555


Q ss_pred             CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772          186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL  265 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l  265 (333)
                      +|++|++++|. +..+|  ++.+++|++|++..+....      ..   .+..++.|+. |++.+..-    .+ ++  +
T Consensus       128 ~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~------~~---~~~~l~~L~~-L~ls~n~l----~~-l~--l  187 (457)
T 3bz5_A          128 LLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT------KL---DVTPQTQLTT-LDCSFNKI----TE-LD--V  187 (457)
T ss_dssp             TCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC------CC---CCTTCTTCCE-EECCSSCC----CC-CC--C
T ss_pred             cCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc------cc---ccccCCcCCE-EECCCCcc----ce-ec--c
Confidence            55555555555 44443  4555555555554443221      11   2334445554 55544211    11 11  5


Q ss_pred             cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhh
Q 048772          266 KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWK  325 (333)
Q Consensus       266 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p  325 (333)
                      ..+++|+.|++++|...+.               .+..   +++|+.|++++|.+.+ +|
T Consensus       188 ~~l~~L~~L~l~~N~l~~~---------------~l~~---l~~L~~L~Ls~N~l~~-ip  228 (457)
T 3bz5_A          188 SQNKLLNRLNCDTNNITKL---------------DLNQ---NIQLTFLDCSSNKLTE-ID  228 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC---------------CCTT---CTTCSEEECCSSCCSC-CC
T ss_pred             ccCCCCCEEECcCCcCCee---------------cccc---CCCCCEEECcCCcccc-cC
Confidence            6667777777776642111               2344   7889999999998877 77

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.57  E-value=8.9e-16  Score=145.33  Aligned_cols=183  Identities=10%  Similarity=0.032  Sum_probs=139.9

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcC-ChhhhcC
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRL-PQGMEKL  184 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~l-p~~~~~L  184 (333)
                      +..+++|++|++++|.+     ..+|.    .++|++|++++|.++.+|..  .+++|++|++++ +.+..+ |..++++
T Consensus        76 l~~l~~L~~L~Ls~N~l-----~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l  143 (487)
T 3oja_A           76 LESLSTLRTLDLNNNYV-----QELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCR  143 (487)
T ss_dssp             CTTCTTCCEEECCSSEE-----EEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCS-SCCCSGGGBCGGGG
T ss_pred             cccCCCCCEEEecCCcC-----CCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCC-CCCCCCCchhhcCC
Confidence            78899999999999998     55553    38999999999999988753  578999999999 666665 5678999


Q ss_pred             CCCCeeecccccccccCchhhc-CCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhh
Q 048772          185 MNLRHLIIMNHVYLEYMPRGIE-RLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHV  263 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~~p~~i~-~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~  263 (333)
                      ++|++|++++|......|..+. .+++|++|++.++....      .   .....++.|+. |++.+..     ....+.
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~------~---~~~~~l~~L~~-L~Ls~N~-----l~~~~~  208 (487)
T 3oja_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD------V---KGQVVFAKLKT-LDLSSNK-----LAFMGP  208 (487)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE------E---ECCCCCTTCCE-EECCSSC-----CCEECG
T ss_pred             CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc------c---cccccCCCCCE-EECCCCC-----CCCCCH
Confidence            9999999999984444566665 89999999998877654      1   22334677776 7777632     223455


Q ss_pred             cCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecCh-hhhhhhHhhh
Q 048772          264 DLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIW-IVWKEWVMNF  331 (333)
Q Consensus       264 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~p~w~~~l  331 (333)
                      .+..+++|+.|++++|...     .        ++..+..   +++|+.|++++|.+. ..+|.|+..+
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~-----~--------lp~~l~~---l~~L~~L~l~~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLV-----L--------IEKALRF---SQNLEHFDLRGNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCC-----E--------ECTTCCC---CTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred             hHcCCCCccEEEecCCcCc-----c--------cchhhcc---CCCCCEEEcCCCCCcCcchHHHHHhC
Confidence            6888999999999988532     1        4445556   889999999999876 3378888653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.57  E-value=2.4e-14  Score=134.77  Aligned_cols=147  Identities=18%  Similarity=0.285  Sum_probs=120.4

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN  186 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~  186 (333)
                      ..++.++.|++.++.+     ..+| .+..+++|++|++++|.++.+|. ++++++|++|++++ +.+..+|. ++++++
T Consensus        43 ~~l~~l~~L~l~~~~i-----~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~-~~~l~~  113 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGI-----KSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN-NQIADITP-LANLTN  113 (466)
T ss_dssp             HHHHTCCEEECCSSCC-----CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG-GTTCTT
T ss_pred             hHhccccEEecCCCCC-----ccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCC-CccccChh-hcCCCC
Confidence            3578899999999998     6776 48889999999999999999987 99999999999999 67888877 999999


Q ss_pred             CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772          187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK  266 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~  266 (333)
                      |++|++++|. +..+|. ++++++|++|++.++....         +..+..+++|+. |.+.+  ....     ...+.
T Consensus       114 L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~---------~~~~~~l~~L~~-L~l~~--~~~~-----~~~~~  174 (466)
T 1o6v_A          114 LTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISD---------ISALSGLTSLQQ-LSFGN--QVTD-----LKPLA  174 (466)
T ss_dssp             CCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECC---------CGGGTTCTTCSE-EEEEE--SCCC-----CGGGT
T ss_pred             CCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccCC---------ChhhccCCcccE-eecCC--cccC-----chhhc
Confidence            9999999998 777876 9999999999999887554         224666677775 66653  1111     22388


Q ss_pred             ccCCCCceEEEeccC
Q 048772          267 EKKNLDRLELWFDNV  281 (333)
Q Consensus       267 ~l~~L~~L~l~~~~~  281 (333)
                      ++++|+.|++++|..
T Consensus       175 ~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          175 NLTTLERLDISSNKV  189 (466)
T ss_dssp             TCTTCCEEECCSSCC
T ss_pred             cCCCCCEEECcCCcC
Confidence            899999999998853

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.57  E-value=3.3e-15  Score=130.02  Aligned_cols=149  Identities=22%  Similarity=0.231  Sum_probs=121.7

Q ss_pred             HhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcC
Q 048772          105 VFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKL  184 (333)
Q Consensus       105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L  184 (333)
                      .+..++.|++|++++|.+     ..+| .+..+++|++|++++|.++.+|. ++++++|++|++++ +.+..+|....  
T Consensus        36 ~~~~l~~L~~L~l~~n~i-----~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~-N~l~~l~~~~~--  105 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNI-----QSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR-NRLKNLNGIPS--  105 (263)
T ss_dssp             CHHHHTTCSEEECTTSCC-----CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-SCCSCCTTCCC--
T ss_pred             chhhcCcCcEEECcCCCc-----ccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC-CccCCcCcccc--
Confidence            357889999999999998     6777 68899999999999999999988 99999999999999 77888876433  


Q ss_pred             CCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772          185 MNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD  264 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~  264 (333)
                      ++|++|++++|. +..+| .++.+++|++|++.++....         +..+..+++|+. |++.+..    ..+.  ..
T Consensus       106 ~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~---------~~~l~~l~~L~~-L~L~~N~----i~~~--~~  167 (263)
T 1xeu_A          106 ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKS---------IVMLGFLSKLEV-LDLHGNE----ITNT--GG  167 (263)
T ss_dssp             SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCB---------CGGGGGCTTCCE-EECTTSC----CCBC--TT
T ss_pred             CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCC---------ChHHccCCCCCE-EECCCCc----Ccch--HH
Confidence            899999999998 77776 59999999999998776554         135666777776 7777632    1221  66


Q ss_pred             CcccCCCCceEEEeccC
Q 048772          265 LKEKKNLDRLELWFDNV  281 (333)
Q Consensus       265 l~~l~~L~~L~l~~~~~  281 (333)
                      +..+++|+.|++++|..
T Consensus       168 l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             STTCCCCCEEEEEEEEE
T ss_pred             hccCCCCCEEeCCCCcc
Confidence            88899999999998854

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.56  E-value=3.6e-15  Score=150.34  Aligned_cols=131  Identities=20%  Similarity=0.227  Sum_probs=93.4

Q ss_pred             HHHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCccc-chhhhcccc
Q 048772           85 TASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKEL-PETCCELIN  162 (333)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~  162 (333)
                      ..++.+.+.+... ....+..|.++++|++|++++|...    ..+ |..+.++++|++|++++|.+..+ |..++++++
T Consensus        24 ~~l~~LdLs~N~i-~~i~~~~~~~l~~L~~LdLs~n~~~----~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           24 NTTERLLLSFNYI-RTVTASSFPFLEQLQLLELGSQYTP----LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             TTCCEEEEESCCC-CEECSSSCSSCCSCSEEEECTTCCC----CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred             CCcCEEECCCCcC-CccChhHCcccccCeEEeCCCCCCc----cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence            4455555554332 2334566788888888888888542    444 56788888888888888888765 678888888


Q ss_pred             CcEEeccCCCCCC-cCChh--hhcCCCCCeeecccccccccC-c-hhhcCCCCCCccceEEeCCC
Q 048772          163 LETLEINRCTRLK-RLPQG--MEKLMNLRHLIIMNHVYLEYM-P-RGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       163 L~~L~l~~~~~~~-~lp~~--~~~L~~L~~L~l~~~~~l~~~-p-~~i~~L~~L~~L~~~~~~~~  222 (333)
                      |++|++++| .+. .+|..  +++|++|++|++++|. +..+ | ..++++++|++|++.++...
T Consensus        99 L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           99 LFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             CCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             cCEeeCcCC-CCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCC
Confidence            888888884 444 35554  7888888888888887 4444 2 45888888888888776543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.56  E-value=8.3e-15  Score=141.10  Aligned_cols=104  Identities=25%  Similarity=0.317  Sum_probs=91.5

Q ss_pred             ccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772          110 TCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQGMEKLMNL  187 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L  187 (333)
                      +.|++|++++|.+     ..+| ..+..+++|++|++++|.++.+ |..++++++|++|++++ +.+..+|..  .+++|
T Consensus        52 ~~L~~L~Ls~N~i-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~--~l~~L  123 (562)
T 3a79_B           52 PRTKALSLSQNSI-----SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCC--PMASL  123 (562)
T ss_dssp             TTCCEEECCSSCC-----CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT-SCCCEECSC--CCTTC
T ss_pred             CCcCEEECCCCCc-----cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC-CcCCccCcc--ccccC
Confidence            7899999999998     5555 5789999999999999999977 57799999999999999 778899987  89999


Q ss_pred             CeeecccccccccCc--hhhcCCCCCCccceEEeCCC
Q 048772          188 RHLIIMNHVYLEYMP--RGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       188 ~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~  222 (333)
                      ++|++++|. +..+|  ..++++++|++|++.++...
T Consensus       124 ~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          124 RHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             SEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CEEECCCCC-ccccCchHhhcccCcccEEecCCCccc
Confidence            999999998 66654  78999999999999887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.56  E-value=6.2e-16  Score=139.09  Aligned_cols=186  Identities=12%  Similarity=0.041  Sum_probs=141.1

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCC--cCChhhh
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLK--RLPQGME  182 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~--~lp~~~~  182 (333)
                      +..+++|++|++++|.+.   ...+|..+..+++|++|++++|.++ ..|..++++++|++|++++|..++  .+|..+.
T Consensus        89 ~~~~~~L~~L~L~~~~l~---~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~  165 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIE---VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS  165 (336)
T ss_dssp             CCCCBCCCEEECTTCEEC---HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             hccCCCCCEEEccCCCcC---HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence            346899999999999872   1227778899999999999999987 678889999999999999975676  3777789


Q ss_pred             cCCCCCeeeccccccccc--CchhhcCCC-CCCccceEEeC--CCCCcccCcccchhhhcCcccccceeEEcccCCCCCc
Q 048772          183 KLMNLRHLIIMNHVYLEY--MPRGIERLT-GLRTLSEFVVG--RTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANV  257 (333)
Q Consensus       183 ~L~~L~~L~l~~~~~l~~--~p~~i~~L~-~L~~L~~~~~~--~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~  257 (333)
                      ++++|++|++++|..+..  +|..++.++ +|++|++.++.  ...      ......+..+++|+. |++.+...   .
T Consensus       166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~------~~l~~~~~~~~~L~~-L~l~~~~~---l  235 (336)
T 2ast_B          166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK------SDLSTLVRRCPNLVH-LDLSDSVM---L  235 (336)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH------HHHHHHHHHCTTCSE-EECTTCTT---C
T ss_pred             cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH------HHHHHHHhhCCCCCE-EeCCCCCc---C
Confidence            999999999999933554  577788999 99999998773  221      223344566778887 88887542   2


Q ss_pred             hhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeee
Q 048772          258 DEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRY  318 (333)
Q Consensus       258 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~  318 (333)
                      .+..+..+..+++|++|++++|.    ..   ...    .+..+..   +++|+.|++.||
T Consensus       236 ~~~~~~~l~~l~~L~~L~l~~~~----~~---~~~----~~~~l~~---~~~L~~L~l~~~  282 (336)
T 2ast_B          236 KNDCFQEFFQLNYLQHLSLSRCY----DI---IPE----TLLELGE---IPTLKTLQVFGI  282 (336)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTCT----TC---CGG----GGGGGGG---CTTCCEEECTTS
T ss_pred             CHHHHHHHhCCCCCCEeeCCCCC----CC---CHH----HHHHHhc---CCCCCEEeccCc
Confidence            24456678889999999999773    11   111    3345666   889999999998

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.56  E-value=1.6e-15  Score=135.58  Aligned_cols=182  Identities=10%  Similarity=0.060  Sum_probs=138.4

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh-hhhcC
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ-GMEKL  184 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L  184 (333)
                      +..+++|++|++++|.+     ..+|    ..++|++|++++|.++.+|..  .+++|++|++++ +.+..++. .++.+
T Consensus        76 ~~~l~~L~~L~Ls~n~l-----~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l  143 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYV-----QELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCR  143 (317)
T ss_dssp             ETTCTTCCEEECCSSEE-----EEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGG
T ss_pred             hhhcCCCCEEECcCCcc-----cccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhcc
Confidence            78899999999999998     5554    348999999999999988753  478999999999 66777754 78899


Q ss_pred             CCCCeeecccccccccC-chhh-cCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhh
Q 048772          185 MNLRHLIIMNHVYLEYM-PRGI-ERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKH  262 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~~-p~~i-~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~  262 (333)
                      ++|++|++++|. +..+ |..+ +.+++|++|++.++....      .   .....+++|+. |++.+..     ....+
T Consensus       144 ~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~------~---~~~~~l~~L~~-L~Ls~N~-----l~~l~  207 (317)
T 3o53_A          144 SRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD------V---KGQVVFAKLKT-LDLSSNK-----LAFMG  207 (317)
T ss_dssp             SSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE------E---ECCCCCTTCCE-EECCSSC-----CCEEC
T ss_pred             CCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcc------c---ccccccccCCE-EECCCCc-----CCcch
Confidence            999999999998 5554 4455 579999999998776554      1   22234667776 7776532     12344


Q ss_pred             hcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecCh-hhhhhhHhhh
Q 048772          263 VDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIW-IVWKEWVMNF  331 (333)
Q Consensus       263 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~p~w~~~l  331 (333)
                      ..+..+++|+.|++++|...     .        ++..+..   +++|+.|++++|.+. ..+|.|+..+
T Consensus       208 ~~~~~l~~L~~L~L~~N~l~-----~--------l~~~~~~---l~~L~~L~l~~N~~~~~~~~~~~~~~  261 (317)
T 3o53_A          208 PEFQSAAGVTWISLRNNKLV-----L--------IEKALRF---SQNLEHFDLRGNGFHCGTLRDFFSKN  261 (317)
T ss_dssp             GGGGGGTTCSEEECTTSCCC-----E--------ECTTCCC---CTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred             hhhcccCcccEEECcCCccc-----c--------hhhHhhc---CCCCCEEEccCCCccCcCHHHHHhcc
Confidence            55888999999999988422     1        4455666   889999999999886 4378888754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.55  E-value=3.6e-16  Score=143.62  Aligned_cols=210  Identities=17%  Similarity=0.084  Sum_probs=141.4

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHh-------hcccccCeeeccCCcCcc-----cchhhhccccCcEEecc
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAM-------KNLIHLRFLKLSWLRIKE-----LPETCCELINLETLEIN  169 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~-------~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~  169 (333)
                      +...+..+++|++|++++|.+-.+. ..+|..+       ..+++|++|++++|.++.     +|..+.++++|++|+++
T Consensus        52 l~~~l~~~~~L~~L~Ls~~~~~~l~-~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~  130 (386)
T 2ca6_A           52 LSENIASKKDLEIAEFSDIFTGRVK-DEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH  130 (386)
T ss_dssp             HHHTTTTCTTCCEEECCSCCTTSCG-GGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHhCCCccEEeCcccccCccc-cchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECc
Confidence            3445678899999999987552111 2345444       678999999999999875     78888999999999999


Q ss_pred             CCCCCC-----cCChhhhcC---------CCCCeeeccccccc-ccCc---hhhcCCCCCCccceEEeCCCCCcccCccc
Q 048772          170 RCTRLK-----RLPQGMEKL---------MNLRHLIIMNHVYL-EYMP---RGIERLTGLRTLSEFVVGRTGGEHASKVC  231 (333)
Q Consensus       170 ~~~~~~-----~lp~~~~~L---------~~L~~L~l~~~~~l-~~~p---~~i~~L~~L~~L~~~~~~~~~~~~~~~~~  231 (333)
                      + +.+.     .++..+..+         ++|++|++++|... ..+|   ..+..+++|++|++.++.....   ....
T Consensus       131 ~-n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~---g~~~  206 (386)
T 2ca6_A          131 N-NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE---GIEH  206 (386)
T ss_dssp             S-SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH---HHHH
T ss_pred             C-CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh---HHHH
Confidence            8 4454     234445555         89999999998722 2444   4677889999999887765420   0001


Q ss_pred             chh-hhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhc--cCCCCCC
Q 048772          232 KLE-ALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSV--RVCLLWD  308 (333)
Q Consensus       232 ~~~-~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~  308 (333)
                      .+. .+..+++|+. |++.+..-.......++..+..+++|++|+|++|.+     +.   .....++..+  .+   ++
T Consensus       207 l~~~~l~~~~~L~~-L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i-----~~---~~~~~l~~~l~~~~---~~  274 (386)
T 2ca6_A          207 LLLEGLAYCQELKV-LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL-----SA---RGAAAVVDAFSKLE---NI  274 (386)
T ss_dssp             HHHTTGGGCTTCCE-EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC-----CH---HHHHHHHHHHHTCS---SC
T ss_pred             HHHHHhhcCCCccE-EECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC-----ch---hhHHHHHHHHhhcc---CC
Confidence            223 5667777886 877763211111255677788899999999987742     11   1111134444  44   67


Q ss_pred             CceeeEEeeecChh----hhhhhH
Q 048772          309 NCHPLKYSRYGIWI----VWKEWV  328 (333)
Q Consensus       309 ~L~~L~l~~~~~~~----~~p~w~  328 (333)
                      +|++|++++|.+..    .+|.++
T Consensus       275 ~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          275 GLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             CCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             CeEEEECcCCcCCHHHHHHHHHHH
Confidence            89999999998765    377776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.55  E-value=1.2e-14  Score=136.37  Aligned_cols=169  Identities=17%  Similarity=0.098  Sum_probs=128.0

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM  185 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~  185 (333)
                      +..+++|++|++++|.+     ..+|  ++.+++|++|++++|.++.+|  ++++++|++|++++ +.+..+|  +++++
T Consensus        81 ~~~l~~L~~L~Ls~N~l-----~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~--l~~l~  148 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKL-----TNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID--VSHNT  148 (457)
T ss_dssp             CTTCTTCSEEECCSSCC-----SCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC--CTTCT
T ss_pred             cccCCCCCEEECcCCCC-----ceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCC-Cccceec--cccCC
Confidence            67788999999999988     5555  888999999999999988886  88999999999998 6677775  78899


Q ss_pred             CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772          186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL  265 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l  265 (333)
                      +|++|++++|..+..+  .++.+++|++|++..+....       ..   +..++.|+. |++.+..-    .+ .  .+
T Consensus       149 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-------l~---l~~l~~L~~-L~l~~N~l----~~-~--~l  208 (457)
T 3bz5_A          149 QLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-------LD---VSQNKLLNR-LNCDTNNI----TK-L--DL  208 (457)
T ss_dssp             TCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-------CC---CTTCTTCCE-EECCSSCC----SC-C--CC
T ss_pred             cCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-------ec---cccCCCCCE-EECcCCcC----Ce-e--cc
Confidence            9999999998656666  37888999999988776554       11   455566665 66655221    11 1  47


Q ss_pred             cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhh
Q 048772          266 KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWK  325 (333)
Q Consensus       266 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p  325 (333)
                      +.+++|+.|++++|...+             ++  +..   +++|+.|++++|.+.+ +|
T Consensus       209 ~~l~~L~~L~Ls~N~l~~-------------ip--~~~---l~~L~~L~l~~N~l~~-~~  249 (457)
T 3bz5_A          209 NQNIQLTFLDCSSNKLTE-------------ID--VTP---LTQLTYFDCSVNPLTE-LD  249 (457)
T ss_dssp             TTCTTCSEEECCSSCCSC-------------CC--CTT---CTTCSEEECCSSCCSC-CC
T ss_pred             ccCCCCCEEECcCCcccc-------------cC--ccc---cCCCCEEEeeCCcCCC-cC
Confidence            788999999998875322             11  344   7889999999988876 54

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.54  E-value=1.1e-15  Score=140.39  Aligned_cols=202  Identities=15%  Similarity=0.112  Sum_probs=141.2

Q ss_pred             hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-----ccchhhhcc---------ccCcEEecc
Q 048772          104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-----ELPETCCEL---------INLETLEIN  169 (333)
Q Consensus       104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~L---------~~L~~L~l~  169 (333)
                      ..+..+++|++|++++|.+...+...+|..+..+++|++|++++|.++     .++..+..+         ++|++|+++
T Consensus        88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~  167 (386)
T 2ca6_A           88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  167 (386)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence            335788999999999999832111137888999999999999999986     244445555         899999999


Q ss_pred             CCCCCC--cCC---hhhhcCCCCCeeecccccccc------cCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcC
Q 048772          170 RCTRLK--RLP---QGMEKLMNLRHLIIMNHVYLE------YMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKG  238 (333)
Q Consensus       170 ~~~~~~--~lp---~~~~~L~~L~~L~l~~~~~l~------~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~  238 (333)
                      + +.+.  .+|   ..+..+++|++|++++|. +.      .+|..+..+++|++|++.++.....+   ....+..+..
T Consensus       168 ~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~  242 (386)
T 2ca6_A          168 R-NRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKS  242 (386)
T ss_dssp             S-SCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGG
T ss_pred             C-CCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHHHHHHHcc
Confidence            9 5564  455   467889999999999997 55      23447889999999999877653200   0123445677


Q ss_pred             cccccceeEEcccCCCCCchhhhhhcCc--ccCCCCceEEEeccCCCCCCCccchHHHHHHhhhc-cCCCCCCCceeeEE
Q 048772          239 MNHLRGLLKIRMLGDLANVDEAKHVDLK--EKKNLDRLELWFDNVGMPDENEENDEAITKIAKSV-RVCLLWDNCHPLKY  315 (333)
Q Consensus       239 L~~L~~~L~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~L~~L~l  315 (333)
                      ++.|+. |++.+..-.......++..+.  .+++|++|+|++|.+.        ..-+..++..+ ..   +++|++|++
T Consensus       243 ~~~L~~-L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~--------~~g~~~l~~~l~~~---l~~L~~L~l  310 (386)
T 2ca6_A          243 WPNLRE-LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE--------LDAVRTLKTVIDEK---MPDLLFLEL  310 (386)
T ss_dssp             CTTCCE-EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB--------HHHHHHHHHHHHHH---CTTCCEEEC
T ss_pred             CCCcCE-EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC--------HHHHHHHHHHHHhc---CCCceEEEc
Confidence            788887 888774321112223455663  4899999999988421        11122255555 44   688999999


Q ss_pred             eeecChh
Q 048772          316 SRYGIWI  322 (333)
Q Consensus       316 ~~~~~~~  322 (333)
                      ++|.+..
T Consensus       311 ~~N~l~~  317 (386)
T 2ca6_A          311 NGNRFSE  317 (386)
T ss_dssp             TTSBSCT
T ss_pred             cCCcCCc
Confidence            9998776

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.54  E-value=2.3e-14  Score=123.69  Aligned_cols=175  Identities=15%  Similarity=0.154  Sum_probs=109.6

Q ss_pred             cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCCC
Q 048772          111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNLR  188 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~  188 (333)
                      ..++++++++.+     ..+|..+.  +.++.|++++|.++.++ ..++++++|++|++++ +.+..++. .+.++++|+
T Consensus        15 ~~~~l~~~~~~l-----~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~   86 (251)
T 3m19_A           15 GKKEVDCQGKSL-----DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELG   86 (251)
T ss_dssp             GGTEEECTTCCC-----SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCC
T ss_pred             CCeEEecCCCCc-----cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC-CcCCccCHhHhccCCcCC
Confidence            456677777776     66665544  46778888888777665 4577778888888887 55665544 467777888


Q ss_pred             eeecccccccccCch-hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcc
Q 048772          189 HLIIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKE  267 (333)
Q Consensus       189 ~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~  267 (333)
                      +|++++|. +..+|. .++.+++|++|++.++....       .....+..++.|+. |++.+.    ......+..+..
T Consensus        87 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~Ls~N----~l~~~~~~~~~~  153 (251)
T 3m19_A           87 TLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKS-------LPSGVFDRLTKLKE-LRLNTN----QLQSIPAGAFDK  153 (251)
T ss_dssp             EEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSS----CCCCCCTTTTTT
T ss_pred             EEECCCCc-ccccChhHhcccCCCCEEEcCCCcCCC-------cChhHhccCCcccE-EECcCC----cCCccCHHHcCc
Confidence            88887777 556654 36777788888777665443       11222344555554 555542    122222335667


Q ss_pred             cCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecCh
Q 048772          268 KKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIW  321 (333)
Q Consensus       268 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~  321 (333)
                      +++|++|+++.|...+.            ....+..   +++|+.|++.+|.+.
T Consensus       154 l~~L~~L~L~~N~l~~~------------~~~~~~~---l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          154 LTNLQTLSLSTNQLQSV------------PHGAFDR---LGKLQTITLFGNQFD  192 (251)
T ss_dssp             CTTCCEEECCSSCCSCC------------CTTTTTT---CTTCCEEECCSCCBC
T ss_pred             CcCCCEEECCCCcCCcc------------CHHHHhC---CCCCCEEEeeCCcee
Confidence            77788888877753322            1224455   677888888776553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=3e-14  Score=123.90  Aligned_cols=105  Identities=25%  Similarity=0.285  Sum_probs=60.1

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM  185 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~  185 (333)
                      +..+++|++|++++|.+     ..+|. +..+++|++|++++|.++.+|....  .+|++|++++ +.+..+| .+++++
T Consensus        59 l~~l~~L~~L~L~~N~i-----~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~-N~l~~~~-~l~~l~  128 (263)
T 1xeu_A           59 MQFFTNLKELHLSHNQI-----SDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDN-NELRDTD-SLIHLK  128 (263)
T ss_dssp             GGGCTTCCEEECCSSCC-----CCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCS-SCCSBSG-GGTTCT
T ss_pred             HhhCCCCCEEECCCCcc-----CCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccC-CccCCCh-hhcCcc
Confidence            45556666666666665     44444 5566666666666666665554322  5666666666 4455554 355666


Q ss_pred             CCCeeecccccccccCchhhcCCCCCCccceEEeCCC
Q 048772          186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~  222 (333)
                      +|++|++++|. +..+| .++.+++|++|++.++...
T Consensus       129 ~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A          129 NLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             TCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCC
T ss_pred             cccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCc
Confidence            66666666665 45554 4556666666665555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.54  E-value=1.6e-14  Score=120.00  Aligned_cols=156  Identities=18%  Similarity=0.201  Sum_probs=121.4

Q ss_pred             hhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCc
Q 048772          134 MKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRT  213 (333)
Q Consensus       134 ~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~  213 (333)
                      ...+++|++|++++|.++.+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+++|++
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            477899999999999999999 7999999999999995 676665 7899999999999999843446778999999999


Q ss_pred             cceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHH
Q 048772          214 LSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEA  293 (333)
Q Consensus       214 L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  293 (333)
                      |++.++....       ..+..+..+++|+. |++.+...+..    . ..+..+++|+.|++++|.+..          
T Consensus       117 L~Ls~n~i~~-------~~~~~l~~l~~L~~-L~L~~n~~i~~----~-~~l~~l~~L~~L~l~~n~i~~----------  173 (197)
T 4ezg_A          117 LDISHSAHDD-------SILTKINTLPKVNS-IDLSYNGAITD----I-MPLKTLPELKSLNIQFDGVHD----------  173 (197)
T ss_dssp             EECCSSBCBG-------GGHHHHTTCSSCCE-EECCSCTBCCC----C-GGGGGCSSCCEEECTTBCCCC----------
T ss_pred             EEecCCccCc-------HhHHHHhhCCCCCE-EEccCCCCccc----c-HhhcCCCCCCEEECCCCCCcC----------
Confidence            9998876543       34667788888887 88887542222    2 268889999999999885322          


Q ss_pred             HHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772          294 ITKIAKSVRVCLLWDNCHPLKYSRYGIWI  322 (333)
Q Consensus       294 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~  322 (333)
                         + ..+..   +++|++|++++|.+.+
T Consensus       174 ---~-~~l~~---l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          174 ---Y-RGIED---FPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ---C-TTGGG---CSSCCEEEECBC----
T ss_pred             ---h-HHhcc---CCCCCEEEeeCcccCC
Confidence               1 14455   7899999999987643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=4.3e-15  Score=127.28  Aligned_cols=196  Identities=15%  Similarity=0.169  Sum_probs=140.3

Q ss_pred             HHhhhhHhcCCccchhhhhHhhhcccccceEeeccc-cccccCCCcch-HhhcccccCeeeccC-CcCcccc-hhhhccc
Q 048772           86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGEN-VWEIGNSKIPK-AMKNLIHLRFLKLSW-LRIKELP-ETCCELI  161 (333)
Q Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~lp~-~~~~l~~L~~L~l~~-~~i~~lp-~~i~~L~  161 (333)
                      ..+.+.+.+.. .....+..|..+++|++|++++|. +     ..+|. .+..+++|++|++++ |.++.+| ..+.+++
T Consensus        32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l-----~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~  105 (239)
T 2xwt_C           32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTL-----QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP  105 (239)
T ss_dssp             TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSC-----CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred             cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCc-----ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence            34444444432 223334577889999999999997 7     56665 678999999999998 8999888 5688999


Q ss_pred             cCcEEeccCCCCCCcCChhhhcCCCCC---eeecccccccccCchh-hcCCCCCC-ccceEEeCCCCCcccCcccchhhh
Q 048772          162 NLETLEINRCTRLKRLPQGMEKLMNLR---HLIIMNHVYLEYMPRG-IERLTGLR-TLSEFVVGRTGGEHASKVCKLEAL  236 (333)
Q Consensus       162 ~L~~L~l~~~~~~~~lp~~~~~L~~L~---~L~l~~~~~l~~~p~~-i~~L~~L~-~L~~~~~~~~~~~~~~~~~~~~~L  236 (333)
                      +|++|++++ +.+..+|. ++.+++|+   +|++++|..+..+|.. ++.+++|+ +|++.++....     .+..  .+
T Consensus       106 ~L~~L~l~~-n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-----i~~~--~~  176 (239)
T 2xwt_C          106 LLKFLGIFN-TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-----VQGY--AF  176 (239)
T ss_dssp             TCCEEEEEE-ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-----ECTT--TT
T ss_pred             CCCEEeCCC-CCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-----cCHh--hc
Confidence            999999999 77888997 88888888   9999999337888765 89999999 99987766543     1211  12


Q ss_pred             cCcccccceeEEcccCCCCCchhhhhhcCccc-CCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEE
Q 048772          237 KGMNHLRGLLKIRMLGDLANVDEAKHVDLKEK-KNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKY  315 (333)
Q Consensus       237 ~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l  315 (333)
                      .. +.|+. |++.+.+.+   ....+..+..+ ++|+.|+++.|....             ++..  .   +++|+.|++
T Consensus       177 ~~-~~L~~-L~L~~n~~l---~~i~~~~~~~l~~~L~~L~l~~N~l~~-------------l~~~--~---~~~L~~L~l  233 (239)
T 2xwt_C          177 NG-TKLDA-VYLNKNKYL---TVIDKDAFGGVYSGPSLLDVSQTSVTA-------------LPSK--G---LEHLKELIA  233 (239)
T ss_dssp             TT-CEEEE-EECTTCTTC---CEECTTTTTTCSBCCSEEECTTCCCCC-------------CCCT--T---CTTCSEEEC
T ss_pred             CC-CCCCE-EEcCCCCCc---ccCCHHHhhccccCCcEEECCCCcccc-------------CChh--H---hccCceeec
Confidence            22 56776 777663222   22234567778 999999999774321             1111  2   678999998


Q ss_pred             eeec
Q 048772          316 SRYG  319 (333)
Q Consensus       316 ~~~~  319 (333)
                      .++.
T Consensus       234 ~~~~  237 (239)
T 2xwt_C          234 RNTW  237 (239)
T ss_dssp             TTC-
T ss_pred             cCcc
Confidence            7653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.53  E-value=1.4e-14  Score=142.52  Aligned_cols=154  Identities=21%  Similarity=0.305  Sum_probs=118.1

Q ss_pred             ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCCh-hhhcCCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQ-GMEKLMN  186 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~  186 (333)
                      +.+++|++++|.+     ..+|. .+.++++|++|++++|.++.+ |..++++++|++|++++ +.+..+|. .|+++++
T Consensus        25 ~~l~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~   98 (680)
T 1ziw_A           25 TNITVLNLTHNQL-----RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH-NELSQLSDKTFAFCTN   98 (680)
T ss_dssp             TTCSEEECCSSCC-----CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred             CCCcEEECCCCCC-----CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC-CccCccChhhhccCCC
Confidence            6899999999998     55554 589999999999999998866 57899999999999999 67889987 5999999


Q ss_pred             CCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772          187 LRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL  265 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l  265 (333)
                      |++|++++|. +..+| ..++++++|++|++.++....       ..+..+.++++|+. |++.+..-    .+..+..+
T Consensus        99 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~-L~L~~n~l----~~~~~~~~  165 (680)
T 1ziw_A           99 LTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSS-------TKLGTQVQLENLQE-LLLSNNKI----QALKSEEL  165 (680)
T ss_dssp             CSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSC-------CCCCSSSCCTTCCE-EECCSSCC----CCBCHHHH
T ss_pred             CCEEECCCCc-cCccChhHccccCCCCEEECCCCcccc-------cCchhhcccccCCE-EEccCCcc----cccCHHHh
Confidence            9999999998 66776 569999999999998876554       23334556777776 77665321    11112222


Q ss_pred             --cccCCCCceEEEeccCC
Q 048772          266 --KEKKNLDRLELWFDNVG  282 (333)
Q Consensus       266 --~~l~~L~~L~l~~~~~~  282 (333)
                        ..+++|+.|++++|...
T Consensus       166 ~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          166 DIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             GGGTTCEESEEECTTCCCC
T ss_pred             hccccccccEEECCCCccc
Confidence              23467888888776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.52  E-value=9.1e-14  Score=122.70  Aligned_cols=149  Identities=25%  Similarity=0.324  Sum_probs=122.8

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM  185 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~  185 (333)
                      +..+++|++|++++|.+     ..++. +..+++|++|++++|.++.+|. ++.+++|++|++++ +.+..+| .+..++
T Consensus        64 ~~~l~~L~~L~L~~n~l-----~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~-n~i~~~~-~l~~l~  134 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKL-----TDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH-NGISDIN-GLVHLP  134 (291)
T ss_dssp             GGGCTTCCEEECCSSCC-----CCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT-SCCCCCG-GGGGCT
T ss_pred             HhcCCCCCEEEccCCcc-----CCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC-CcCCCCh-hhcCCC
Confidence            67889999999999998     66766 9999999999999999998775 99999999999999 6788875 689999


Q ss_pred             CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772          186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL  265 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l  265 (333)
                      +|++|++++|. +..+ ..++.+++|++|++.++....      ..   .+..+++|+. |++.+..- .    .+ ..+
T Consensus       135 ~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~------~~---~l~~l~~L~~-L~L~~N~i-~----~l-~~l  196 (291)
T 1h6t_A          135 QLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISD------IV---PLAGLTKLQN-LYLSKNHI-S----DL-RAL  196 (291)
T ss_dssp             TCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCC------CG---GGTTCTTCCE-EECCSSCC-C----BC-GGG
T ss_pred             CCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCcccc------ch---hhcCCCccCE-EECCCCcC-C----CC-hhh
Confidence            99999999998 6777 569999999999998877654      11   2667777776 77776321 1    12 348


Q ss_pred             cccCCCCceEEEeccC
Q 048772          266 KEKKNLDRLELWFDNV  281 (333)
Q Consensus       266 ~~l~~L~~L~l~~~~~  281 (333)
                      ..+++|+.|++++|..
T Consensus       197 ~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          197 AGLKNLDVLELFSQEC  212 (291)
T ss_dssp             TTCTTCSEEEEEEEEE
T ss_pred             ccCCCCCEEECcCCcc
Confidence            8899999999998854

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.51  E-value=1.4e-14  Score=128.99  Aligned_cols=157  Identities=13%  Similarity=0.092  Sum_probs=85.1

Q ss_pred             cccccceEeeccccccccCCCcchHh--hcccccCeeeccCCcCcc-cc----hhhhccccCcEEeccCCCCCCcCC-hh
Q 048772          109 FTCLRALRICGENVWEIGNSKIPKAM--KNLIHLRFLKLSWLRIKE-LP----ETCCELINLETLEINRCTRLKRLP-QG  180 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~lp~~~--~~l~~L~~L~l~~~~i~~-lp----~~i~~L~~L~~L~l~~~~~~~~lp-~~  180 (333)
                      ++.|+.|++++|.+.    ...|..+  ..+++|++|++++|.++. .|    ..+..+++|++|++++ +.+..+| ..
T Consensus        90 ~~~L~~L~l~~n~l~----~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~  164 (310)
T 4glp_A           90 YSRLKELTLEDLKIT----GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQ-AHSPAFSCEQ  164 (310)
T ss_dssp             HSCCCEEEEESCCCB----SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEEC-CSSCCCCTTS
T ss_pred             cCceeEEEeeCCEec----cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeC-CCcchhhHHH
Confidence            455777777777662    3444444  667777777777777653 22    2334567777777776 4455444 45


Q ss_pred             hhcCCCCCeeeccccccccc--Cch--hhcCCCCCCccceEEeCCCCCcccCcccchhh-hcCcccccceeEEcccCCCC
Q 048772          181 MEKLMNLRHLIIMNHVYLEY--MPR--GIERLTGLRTLSEFVVGRTGGEHASKVCKLEA-LKGMNHLRGLLKIRMLGDLA  255 (333)
Q Consensus       181 ~~~L~~L~~L~l~~~~~l~~--~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~-L~~L~~L~~~L~~~~~~~~~  255 (333)
                      ++++++|++|++++|.....  +|.  .++.+++|++|++.++....     .+..... +..+++|+. |++.+..   
T Consensus       165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~~l~~L~~-L~Ls~N~---  235 (310)
T 4glp_A          165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-----PTGVCAALAAAGVQPHS-LDLSHNS---  235 (310)
T ss_dssp             CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-----HHHHHHHHHHHTCCCSS-EECTTSC---
T ss_pred             hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-----hHHHHHHHHhcCCCCCE-EECCCCC---
Confidence            66777777777777652211  221  23566777777776655432     1111111 244455555 5555421   


Q ss_pred             CchhhhhhcCccc---CCCCceEEEecc
Q 048772          256 NVDEAKHVDLKEK---KNLDRLELWFDN  280 (333)
Q Consensus       256 ~~~~~~~~~l~~l---~~L~~L~l~~~~  280 (333)
                       ..+..+..+..+   ++|++|++++|.
T Consensus       236 -l~~~~p~~~~~~~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          236 -LRATVNPSAPRCMWSSALNSLNLSFAG  262 (310)
T ss_dssp             -CCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred             -CCccchhhHHhccCcCcCCEEECCCCC
Confidence             222223334443   567777776663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.50  E-value=2.9e-14  Score=138.56  Aligned_cols=104  Identities=18%  Similarity=0.212  Sum_probs=57.9

Q ss_pred             cccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCCh-hhhcCCCC
Q 048772          111 CLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQ-GMEKLMNL  187 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L  187 (333)
                      .+++|++++|.+     ..+| ..|.++++|++|+|++|.|+.+|+ .+++|++|++|+|++ +.++.+|. .|.+|++|
T Consensus        53 ~~~~LdLs~N~i-----~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~f~~L~~L  126 (635)
T 4g8a_A           53 STKNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSL  126 (635)
T ss_dssp             TCCEEECTTSCC-----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECGGGGTTCTTC
T ss_pred             CCCEEEeeCCCC-----CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC-CcCCCCCHHHhcCCCCC
Confidence            455666666655     4443 245556666666666666655543 455566666666665 44555553 34556666


Q ss_pred             CeeecccccccccCchh-hcCCCCCCccceEEeCC
Q 048772          188 RHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGR  221 (333)
Q Consensus       188 ~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~  221 (333)
                      ++|++++|. +..+|.. +++|++|++|++.++..
T Consensus       127 ~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          127 QKLVAVETN-LASLENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             CEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCc-CCCCChhhhhcCcccCeeccccCcc
Confidence            666666655 4455433 55666666666555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.50  E-value=1.2e-14  Score=129.44  Aligned_cols=189  Identities=13%  Similarity=0.021  Sum_probs=133.7

Q ss_pred             hhhHh--hhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCc-
Q 048772          102 LEDVF--KQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKR-  176 (333)
Q Consensus       102 ~~~~~--~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~-  176 (333)
                      .+..+  ..+++|++|++++|.+.... ..++ ..+..+++|++|++++|.+..+| ..++.+++|++|++++ +.+.. 
T Consensus       107 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~  184 (310)
T 4glp_A          107 MPPLPLEATGLALSSLRLRNVSWATGR-SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSD-NPGLGE  184 (310)
T ss_dssp             CCCCSSSCCCBCCSSCEEESCCCSSTT-SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCS-CTTCHH
T ss_pred             hhhhhhhccCCCCCEEEeecccccchh-hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCC-CCCccc
Confidence            34444  78899999999999983100 0112 34567999999999999998776 6889999999999999 44432 


Q ss_pred             --CCh--hhhcCCCCCeeecccccccccCchh----hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEE
Q 048772          177 --LPQ--GMEKLMNLRHLIIMNHVYLEYMPRG----IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKI  248 (333)
Q Consensus       177 --lp~--~~~~L~~L~~L~l~~~~~l~~~p~~----i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~  248 (333)
                        +|.  .++.+++|++|++++|. ++.+|..    ++.+++|++|++.++....    ..+..+..+..+++|+. |++
T Consensus       185 ~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~----~~p~~~~~~~~~~~L~~-L~L  258 (310)
T 4glp_A          185 RGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRA----TVNPSAPRCMWSSALNS-LNL  258 (310)
T ss_dssp             HHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCC----CCCSCCSSCCCCTTCCC-EEC
T ss_pred             hhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCc----cchhhHHhccCcCcCCE-EEC
Confidence              332  24789999999999998 6766653    5788999999998887665    11233444444467776 777


Q ss_pred             cccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772          249 RMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI  322 (333)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~  322 (333)
                      .+..    . ..++..+.  ++|+.|++++|...+.              ..+..   +++|+.|++++|.+..
T Consensus       259 s~N~----l-~~lp~~~~--~~L~~L~Ls~N~l~~~--------------~~~~~---l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          259 SFAG----L-EQVPKGLP--AKLRVLDLSSNRLNRA--------------PQPDE---LPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CSSC----C-CSCCSCCC--SCCSCEECCSCCCCSC--------------CCTTS---CCCCSCEECSSTTTSC
T ss_pred             CCCC----C-Cchhhhhc--CCCCEEECCCCcCCCC--------------chhhh---CCCccEEECcCCCCCC
Confidence            6532    1 13444453  7999999998853321              12344   7899999999998753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=4.2e-14  Score=119.66  Aligned_cols=105  Identities=24%  Similarity=0.378  Sum_probs=56.8

Q ss_pred             ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-MEKLMN  186 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~  186 (333)
                      +.++.|++++|.+     ..+|. .+..+++|++|++++|.++.+ |..+.++++|++|++++ +.+..+|.. +.++++
T Consensus        32 ~~l~~L~l~~n~i-----~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~  105 (220)
T 2v9t_B           32 ETITEIRLEQNTI-----KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFS  105 (220)
T ss_dssp             TTCCEEECCSSCC-----CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred             cCCCEEECCCCcC-----CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCC
Confidence            3455666666655     33333 355555666666666655544 44555666666666665 445555544 345566


Q ss_pred             CCeeecccccccccC-chhhcCCCCCCccceEEeCC
Q 048772          187 LRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGR  221 (333)
Q Consensus       187 L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~  221 (333)
                      |++|++++|. +..+ |..++.+++|++|++.++..
T Consensus       106 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B          106 LQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKL  140 (220)
T ss_dssp             CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcC
Confidence            6666666555 3333 33455555555555554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.47  E-value=9.5e-14  Score=133.21  Aligned_cols=168  Identities=18%  Similarity=0.129  Sum_probs=121.0

Q ss_pred             cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCC
Q 048772          109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLR  188 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~  188 (333)
                      +++|++|++++|.+     ..+|   ..+++|++|++++|.++.+|. +++  +|++|++++ +.++.+|.   .+++|+
T Consensus        79 ~~~L~~L~Ls~N~l-----~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~-N~l~~lp~---~l~~L~  143 (571)
T 3cvr_A           79 PPQITVLEITQNAL-----ISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN-NQLTMLPE---LPALLE  143 (571)
T ss_dssp             CTTCSEEECCSSCC-----SCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS-SCCSCCCC---CCTTCC
T ss_pred             cCCCCEEECcCCCC-----cccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC-CcCCCCCC---cCcccc
Confidence            36789999999988     6777   457889999999999888888 665  899999998 67888887   688999


Q ss_pred             eeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCccc
Q 048772          189 HLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEK  268 (333)
Q Consensus       189 ~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l  268 (333)
                      +|++++|. +..+|.   .+++|++|++.++....     .+.    +.  ++|+. |++.+.. +.    .++. +.. 
T Consensus       144 ~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~-----lp~----l~--~~L~~-L~Ls~N~-L~----~lp~-~~~-  200 (571)
T 3cvr_A          144 YINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTF-----LPE----LP--ESLEA-LDVSTNL-LE----SLPA-VPV-  200 (571)
T ss_dssp             EEECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-----CCC----CC--TTCCE-EECCSSC-CS----SCCC-CC--
T ss_pred             EEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCC-----cch----hh--CCCCE-EECcCCC-CC----chhh-HHH-
Confidence            99999888 677876   57888888888776554     122    22  55555 6665521 11    2233 332 


Q ss_pred             CCC-------CceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhh
Q 048772          269 KNL-------DRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNF  331 (333)
Q Consensus       269 ~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l  331 (333)
                       +|       +.|++++|.+.     .        ++..+..   +++|+.|++++|.+.+.+|.+++.+
T Consensus       201 -~L~~~~~~L~~L~Ls~N~l~-----~--------lp~~l~~---l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          201 -RNHHSEETEIFFRCRENRIT-----H--------IPENILS---LDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             --------CCEEEECCSSCCC-----C--------CCGGGGG---SCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             -hhhcccccceEEecCCCcce-----e--------cCHHHhc---CCCCCEEEeeCCcCCCcCHHHHHHh
Confidence             55       88999887532     2        4555666   7889999999999877688888764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.47  E-value=8.7e-14  Score=134.95  Aligned_cols=78  Identities=24%  Similarity=0.244  Sum_probs=43.0

Q ss_pred             cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCC
Q 048772          109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLR  188 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~  188 (333)
                      +++|++|++++|.+     ..+|.   .+++|++|++++|.++.+|.   .+.+|++|++++ +.+..+|..   +++|+
T Consensus        80 l~~L~~L~Ls~N~l-----~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~-N~l~~lp~~---l~~L~  144 (622)
T 3g06_A           80 PPELRTLEVSGNQL-----TSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFG-NQLTSLPVL---PPGLQ  144 (622)
T ss_dssp             CTTCCEEEECSCCC-----SCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCS-SCCSCCCCC---CTTCC
T ss_pred             CCCCCEEEcCCCcC-----CcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCC-CCCCcCCCC---CCCCC
Confidence            45666666666665     44554   45566666666666665554   344555555555 345555542   25556


Q ss_pred             eeecccccccccCc
Q 048772          189 HLIIMNHVYLEYMP  202 (333)
Q Consensus       189 ~L~l~~~~~l~~~p  202 (333)
                      +|++++|. +..+|
T Consensus       145 ~L~Ls~N~-l~~l~  157 (622)
T 3g06_A          145 ELSVSDNQ-LASLP  157 (622)
T ss_dssp             EEECCSSC-CSCCC
T ss_pred             EEECcCCc-CCCcC
Confidence            66665554 44444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=8.1e-14  Score=112.61  Aligned_cols=107  Identities=25%  Similarity=0.323  Sum_probs=64.0

Q ss_pred             ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCc-CChhhhcCCCCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKR-LPQGMEKLMNLR  188 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~-lp~~~~~L~~L~  188 (333)
                      +.|+.|++++|.+.+   ..+|..+..+++|++|++++|.++.+ ..++.+++|++|++++ +.+.. +|..++++++|+
T Consensus        24 ~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           24 AAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE-NRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             TSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEES-CCCCSCCCHHHHHCTTCC
T ss_pred             ccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcC-CcCchHHHHHHhhCCCCC
Confidence            556666666666510   15555556666666666666666655 5566666666666666 44444 555555566666


Q ss_pred             eeecccccccccCc--hhhcCCCCCCccceEEeCCC
Q 048772          189 HLIIMNHVYLEYMP--RGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       189 ~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~  222 (333)
                      +|++++|. +..+|  ..++.+++|++|++.++...
T Consensus        99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A           99 HLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             EEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             EEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence            66666665 55554  45666666666666555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=9e-14  Score=137.59  Aligned_cols=116  Identities=20%  Similarity=0.216  Sum_probs=102.4

Q ss_pred             hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh
Q 048772          101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG  180 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~  180 (333)
                      .++..+..++.|++|++++|.+     ..+|..+..+++|++|+|++|.++.+|..+++|++|++|+|++ +.+..+|..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l-----~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~  288 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQI-----FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAE  288 (727)
T ss_dssp             -------CCCCCCEEECTTSCC-----SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSS
T ss_pred             cChhhhccCCCCcEEECCCCCC-----CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChh
Confidence            4567788899999999999998     7889889999999999999999999999999999999999999 778899999


Q ss_pred             hhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCC
Q 048772          181 MEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTG  223 (333)
Q Consensus       181 ~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~  223 (333)
                      |++|++|++|++++|. +..+|..|++|++|++|++.++....
T Consensus       289 ~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             GGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             hcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCC
Confidence            9999999999999998 78999999999999999998877654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.45  E-value=1.1e-13  Score=132.66  Aligned_cols=167  Identities=18%  Similarity=0.162  Sum_probs=125.2

Q ss_pred             ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772          110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH  189 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~  189 (333)
                      .+++.|++++|.+     ..+|..+.  ++|++|++++|.++.+|   +.+++|++|++++ +.+..+|. +++  +|++
T Consensus        59 ~~L~~L~Ls~n~L-----~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~-N~l~~ip~-l~~--~L~~  124 (571)
T 3cvr_A           59 NQFSELQLNRLNL-----SSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACD-NRLSTLPE-LPA--SLKH  124 (571)
T ss_dssp             TTCSEEECCSSCC-----SCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCS-SCCSCCCC-CCT--TCCE
T ss_pred             CCccEEEeCCCCC-----CccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccC-CCCCCcch-hhc--CCCE
Confidence            3899999999998     66887663  78999999999999999   5689999999999 67888998 665  9999


Q ss_pred             eecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccC
Q 048772          190 LIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKK  269 (333)
Q Consensus       190 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~  269 (333)
                      |++++|. +..+|.   .+++|++|++.++....     .+.      .+++|+. |++.+..    . ..++. +.  +
T Consensus       125 L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l~~-----lp~------~l~~L~~-L~Ls~N~----L-~~lp~-l~--~  180 (571)
T 3cvr_A          125 LDVDNNQ-LTMLPE---LPALLEYINADNNQLTM-----LPE------LPTSLEV-LSVRNNQ----L-TFLPE-LP--E  180 (571)
T ss_dssp             EECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-----CCC------CCTTCCE-EECCSSC----C-SCCCC-CC--T
T ss_pred             EECCCCc-CCCCCC---cCccccEEeCCCCccCc-----CCC------cCCCcCE-EECCCCC----C-CCcch-hh--C
Confidence            9999998 777887   68999999998877654     122      3556665 6666532    1 11344 54  8


Q ss_pred             CCCceEEEeccCCCCCCCccchHHHHHHhh---hc-cCCCCCCCceeeEEeeecChhhhhhhHhhh
Q 048772          270 NLDRLELWFDNVGMPDENEENDEAITKIAK---SV-RVCLLWDNCHPLKYSRYGIWIVWKEWVMNF  331 (333)
Q Consensus       270 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~---~l-~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l  331 (333)
                      +|+.|+|+.|.+..             ++.   .+ .+   ++.|+.|++++|.+.. +|.++..+
T Consensus       181 ~L~~L~Ls~N~L~~-------------lp~~~~~L~~~---~~~L~~L~Ls~N~l~~-lp~~l~~l  229 (571)
T 3cvr_A          181 SLEALDVSTNLLES-------------LPAVPVRNHHS---EETEIFFRCRENRITH-IPENILSL  229 (571)
T ss_dssp             TCCEEECCSSCCSS-------------CCCCC-----------CCEEEECCSSCCCC-CCGGGGGS
T ss_pred             CCCEEECcCCCCCc-------------hhhHHHhhhcc---cccceEEecCCCccee-cCHHHhcC
Confidence            99999999885321             221   11 11   2334999999999998 99988753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.45  E-value=2.5e-13  Score=131.43  Aligned_cols=150  Identities=25%  Similarity=0.326  Sum_probs=122.9

Q ss_pred             HhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcC
Q 048772          105 VFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKL  184 (333)
Q Consensus       105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L  184 (333)
                      .+..+++|+.|++++|.+     ..+|. +..+++|+.|+|++|.++.+| .++.+++|++|+|++ +.+..+| .+..|
T Consensus        60 ~l~~l~~L~~L~Ls~N~l-----~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~-~l~~l  130 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKL-----TDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH-NGISDIN-GLVHL  130 (605)
T ss_dssp             TGGGCTTCCEEECTTSCC-----CCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT-SCCCCCG-GGGGC
T ss_pred             HHccCCCCCEEEeeCCCC-----CCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC-CCCCCCc-cccCC
Confidence            367899999999999998     66665 899999999999999999887 689999999999999 6688875 58999


Q ss_pred             CCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772          185 MNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD  264 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~  264 (333)
                      ++|+.|++++|. +..+ ..++.|++|++|++.++....      ..   .+..++.|+. |++.+..-    .+  ...
T Consensus       131 ~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~------~~---~l~~l~~L~~-L~Ls~N~i----~~--l~~  192 (605)
T 1m9s_A          131 PQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISD------IV---PLAGLTKLQN-LYLSKNHI----SD--LRA  192 (605)
T ss_dssp             TTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCC------CG---GGTTCTTCCE-EECCSSCC----CB--CGG
T ss_pred             CccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCC------ch---hhccCCCCCE-EECcCCCC----CC--ChH
Confidence            999999999998 6777 569999999999998877654      11   1667777776 77776321    11  246


Q ss_pred             CcccCCCCceEEEeccC
Q 048772          265 LKEKKNLDRLELWFDNV  281 (333)
Q Consensus       265 l~~l~~L~~L~l~~~~~  281 (333)
                      +..+++|+.|+|+.|..
T Consensus       193 l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             GTTCTTCSEEECCSEEE
T ss_pred             HccCCCCCEEEccCCcC
Confidence            88899999999998854

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.45  E-value=2.6e-13  Score=115.52  Aligned_cols=126  Identities=26%  Similarity=0.371  Sum_probs=87.0

Q ss_pred             ccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772          110 TCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQG-MEKLMN  186 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~  186 (333)
                      +.|++|++++|.+     ..+ |..+..+++|++|++++|.++.+|. .++.+++|++|++++ +.+..+|.. +..+++
T Consensus        40 ~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~  113 (229)
T 3e6j_A           40 TNAQILYLHDNQI-----TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVH  113 (229)
T ss_dssp             TTCSEEECCSSCC-----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred             CCCCEEEcCCCcc-----CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC-CcCCccChhHhCcchh
Confidence            6678888888877     333 5567778888888888888877774 457788888888887 567777654 567888


Q ss_pred             CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcc
Q 048772          187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRM  250 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~  250 (333)
                      |++|++++|. +..+|..++.+++|++|++.++....       .....+..+++|+. |++.+
T Consensus       114 L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~l~~  168 (229)
T 3e6j_A          114 LKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKS-------IPHGAFDRLSSLTH-AYLFG  168 (229)
T ss_dssp             CCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCC-------CCTTTTTTCTTCCE-EECTT
T ss_pred             hCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCc-------cCHHHHhCCCCCCE-EEeeC
Confidence            8888888777 67777777888888888777665443       11133444555554 55544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.45  E-value=1.3e-13  Score=111.38  Aligned_cols=114  Identities=23%  Similarity=0.278  Sum_probs=87.5

Q ss_pred             hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-cchhhhccccCcEEeccCCCCCCcCC-
Q 048772          101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-LPETCCELINLETLEINRCTRLKRLP-  178 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~l~~~~~~~~lp-  178 (333)
                      .++..+..+++|++|++++|.+     ..+ ..+..+++|++|++++|.++. +|..++++++|++|++++ +.+..+| 
T Consensus        40 ~i~~~~~~l~~L~~L~l~~n~l-----~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~  112 (168)
T 2ell_A           40 KIEGLTAEFVNLEFLSLINVGL-----ISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG-NKLKDIST  112 (168)
T ss_dssp             BCSSCCGGGGGCCEEEEESSCC-----CCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS-SSCCSSGG
T ss_pred             hHHHHHHhCCCCCEEeCcCCCC-----CCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC-CccCcchh
Confidence            4566667788888888888887     444 567778888888888888776 677777788888888888 5677776 


Q ss_pred             -hhhhcCCCCCeeecccccccccCch----hhcCCCCCCccceEEeCCC
Q 048772          179 -QGMEKLMNLRHLIIMNHVYLEYMPR----GIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       179 -~~~~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~~~  222 (333)
                       ..+..+++|++|++++|. +..+|.    .+..+++|++|++..+...
T Consensus       113 ~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          113 LEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             GGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             HHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence             577888888888888887 666665    5788888888888776544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.45  E-value=1.1e-13  Score=115.76  Aligned_cols=177  Identities=18%  Similarity=0.190  Sum_probs=126.6

Q ss_pred             cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCChh-hhcCCCCCee
Q 048772          113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQG-MEKLMNLRHL  190 (333)
Q Consensus       113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L  190 (333)
                      +.++.+++.+     ..+|..+  .++|++|++++|.++.+|. .++++++|++|++++ +.+..+|.. +.++++|++|
T Consensus        10 ~~v~c~~~~l-----~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L   81 (208)
T 2o6s_A           10 TTVECYSQGR-----TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYL   81 (208)
T ss_dssp             TEEECCSSCC-----SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred             CEEEecCCCc-----cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCC-CccCccChhhcCCCCCcCEE
Confidence            4566667766     5666443  4588999999999888875 468899999999998 677887765 5789999999


Q ss_pred             ecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccC
Q 048772          191 IIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKK  269 (333)
Q Consensus       191 ~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~  269 (333)
                      ++++|. +..+|.. ++.+++|++|++.++....       .....+..+++|+. |++.+..    ..+.....+..++
T Consensus        82 ~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~l~~N~----l~~~~~~~~~~l~  148 (208)
T 2o6s_A           82 NLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQS-------LPDGVFDKLTQLKD-LRLYQNQ----LKSVPDGVFDRLT  148 (208)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSSC----CSCCCTTTTTTCT
T ss_pred             ECCCCc-CCccCHhHhcCccCCCEEEcCCCcCcc-------cCHhHhccCCcCCE-EECCCCc----cceeCHHHhccCC
Confidence            999987 6777755 6889999999987776543       12223456666665 6666521    2222334477888


Q ss_pred             CCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhhhh
Q 048772          270 NLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMNFW  332 (333)
Q Consensus       270 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~l~  332 (333)
                      +|+.|+++.|..                   ...   +++|+.|++.++...+.+|.|++.++
T Consensus       149 ~L~~L~l~~N~~-------------------~~~---~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          149 SLQYIWLHDNPW-------------------DCT---CPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TCCEEECCSCCB-------------------CCC---TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CccEEEecCCCe-------------------ecC---CCCHHHHHHHHHhCCceeeccCcccc
Confidence            999999987731                   223   66788888888777755888887765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.44  E-value=1.9e-13  Score=115.66  Aligned_cols=147  Identities=15%  Similarity=0.202  Sum_probs=80.6

Q ss_pred             cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc--hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCe
Q 048772          113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP--ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRH  189 (333)
Q Consensus       113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~  189 (333)
                      ++++++++.+     ..+|..+.  ..+++|++++|.++.++  ..++++++|++|++++ +.+..+|. .+.++++|++
T Consensus        14 ~~l~~s~n~l-----~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A           14 TTVDCSNQKL-----NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             TEEECCSSCC-----SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCE
T ss_pred             CEeEeCCCCc-----ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhCCCCCCCE
Confidence            4566666665     45554432  23466666666666553  2356666666666666 45555543 4666666666


Q ss_pred             eecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCccc
Q 048772          190 LIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEK  268 (333)
Q Consensus       190 L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l  268 (333)
                      |++++|. +..+|.. ++.+++|++|++.++....       .....+..+++|+. |++.+.    ......+..+..+
T Consensus        86 L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~-L~L~~N----~l~~~~~~~~~~l  152 (220)
T 2v70_A           86 ILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITC-------VGNDSFIGLSSVRL-LSLYDN----QITTVAPGAFDTL  152 (220)
T ss_dssp             EECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCC-------BCTTSSTTCTTCSE-EECTTS----CCCCBCTTTTTTC
T ss_pred             EECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCe-------ECHhHcCCCccCCE-EECCCC----cCCEECHHHhcCC
Confidence            6666666 4444433 6666666666665554433       11223344444554 555441    1222234556666


Q ss_pred             CCCCceEEEecc
Q 048772          269 KNLDRLELWFDN  280 (333)
Q Consensus       269 ~~L~~L~l~~~~  280 (333)
                      ++|+.|++++|.
T Consensus       153 ~~L~~L~L~~N~  164 (220)
T 2v70_A          153 HSLSTLNLLANP  164 (220)
T ss_dssp             TTCCEEECCSCC
T ss_pred             CCCCEEEecCcC
Confidence            777777776654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=5.7e-14  Score=111.18  Aligned_cols=108  Identities=21%  Similarity=0.267  Sum_probs=82.3

Q ss_pred             cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCc-CChhhhcCCCC
Q 048772          109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKR-LPQGMEKLMNL  187 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~-lp~~~~~L~~L  187 (333)
                      .++|+.|++++|.+.+   ..+|..+..+++|++|++++|.++.+ ..++++++|++|++++ +.+.. +|..++++++|
T Consensus        16 ~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD-NRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCS-SCCCSCTHHHHHHCTTC
T ss_pred             CccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCC-CcccchHHHHhhhCCCC
Confidence            4678888888888710   26777778888888888888888777 6678888888888888 55665 77777778888


Q ss_pred             CeeecccccccccCc--hhhcCCCCCCccceEEeCCC
Q 048772          188 RHLIIMNHVYLEYMP--RGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       188 ~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~  222 (333)
                      ++|++++|. +..+|  ..++.+++|++|++.++...
T Consensus        91 ~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           91 THLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             CEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            888888887 66654  66788888888887666543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.43  E-value=1.5e-13  Score=133.31  Aligned_cols=188  Identities=20%  Similarity=0.119  Sum_probs=123.4

Q ss_pred             ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772          110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH  189 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~  189 (333)
                      ++|++|++++|.+     ..+|.   .+++|++|++++|.++.+|.   .+++|++|++++ +.+..+|.   .+++|+.
T Consensus        61 ~~L~~L~L~~N~l-----~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~l~~l~~---~l~~L~~  125 (622)
T 3g06_A           61 AHITTLVIPDNNL-----TSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS-NPLTHLPA---LPSGLCK  125 (622)
T ss_dssp             TTCSEEEECSCCC-----SCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS-CCCCCCCC---CCTTCCE
T ss_pred             CCCcEEEecCCCC-----CCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC-CcCCCCCC---CCCCcCE
Confidence            7899999999998     67776   57899999999999999997   789999999999 77888987   6789999


Q ss_pred             eecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCc--------------ccccceeEEcccCCCC
Q 048772          190 LIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGM--------------NHLRGLLKIRMLGDLA  255 (333)
Q Consensus       190 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L--------------~~L~~~L~~~~~~~~~  255 (333)
                      |++++|. +..+|..   +++|++|++.++....     .+..+..|..|              ++|+. |++.+..- .
T Consensus       126 L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~-L~Ls~N~l-~  194 (622)
T 3g06_A          126 LWIFGNQ-LTSLPVL---PPGLQELSVSDNQLAS-----LPALPSELCKLWAYNNQLTSLPMLPSGLQE-LSVSDNQL-A  194 (622)
T ss_dssp             EECCSSC-CSCCCCC---CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSCCCCCCTTCCE-EECCSSCC-S
T ss_pred             EECCCCC-CCcCCCC---CCCCCEEECcCCcCCC-----cCCccCCCCEEECCCCCCCCCcccCCCCcE-EECCCCCC-C
Confidence            9999998 7888874   4788899888776554     22333344433              55554 55554221 1


Q ss_pred             CchhhhhhcCccc--------------CCCCceEEEeccCCCCCCCc--c-----chHHHHHHhhhccCCCCCCCceeeE
Q 048772          256 NVDEAKHVDLKEK--------------KNLDRLELWFDNVGMPDENE--E-----NDEAITKIAKSVRVCLLWDNCHPLK  314 (333)
Q Consensus       256 ~~~~~~~~~l~~l--------------~~L~~L~l~~~~~~~~~~~~--~-----~~~~~~~~~~~l~~~~~~~~L~~L~  314 (333)
                      ... ..+..+..+              ++|+.|++++|...+.....  .     ..+    -+..+.+  .+++|+.|+
T Consensus       195 ~l~-~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N----~L~~lp~--~~~~L~~L~  267 (622)
T 3g06_A          195 SLP-TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN----RLTSLPM--LPSGLLSLS  267 (622)
T ss_dssp             CCC-CCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS----CCSCCCC--CCTTCCEEE
T ss_pred             CCC-CccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCC----CCCcCCc--ccccCcEEe
Confidence            100 011222222              56666777666543311000  0     001    1112222  256788888


Q ss_pred             EeeecChhhhhhhHhhh
Q 048772          315 YSRYGIWIVWKEWVMNF  331 (333)
Q Consensus       315 l~~~~~~~~~p~w~~~l  331 (333)
                      +++|.+.. +|.++..+
T Consensus       268 Ls~N~L~~-lp~~l~~l  283 (622)
T 3g06_A          268 VYRNQLTR-LPESLIHL  283 (622)
T ss_dssp             CCSSCCCS-CCGGGGGS
T ss_pred             CCCCCCCc-CCHHHhhc
Confidence            88888776 78777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=5.8e-14  Score=111.12  Aligned_cols=109  Identities=25%  Similarity=0.317  Sum_probs=95.3

Q ss_pred             hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-cchhhhccccCcEEeccCCCCCCcCC-
Q 048772          101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-LPETCCELINLETLEINRCTRLKRLP-  178 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~l~~~~~~~~lp-  178 (333)
                      .++..+..+++|++|++++|.+     ..+ ..++.+++|++|++++|.++. +|..++.+++|++|++++ +.+..+| 
T Consensus        33 ~~~~~~~~l~~L~~L~l~~n~l-----~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~-N~i~~~~~  105 (149)
T 2je0_A           33 KLEGLTDEFEELEFLSTINVGL-----TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG-NKIKDLST  105 (149)
T ss_dssp             BCCSCCTTCTTCCEEECTTSCC-----CCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT-SCCCSHHH
T ss_pred             HHHHHHhhcCCCcEEECcCCCC-----CCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC-CcCCChHH
Confidence            4566778899999999999998     555 678899999999999999997 888888999999999999 6788875 


Q ss_pred             -hhhhcCCCCCeeecccccccccCch----hhcCCCCCCccceE
Q 048772          179 -QGMEKLMNLRHLIIMNHVYLEYMPR----GIERLTGLRTLSEF  217 (333)
Q Consensus       179 -~~~~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~  217 (333)
                       ..++.+++|++|++++|. +..+|.    .++.+++|++|++.
T Consensus       106 ~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          106 IEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             HHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence             789999999999999998 677775    58899999998864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=1.4e-14  Score=120.47  Aligned_cols=110  Identities=22%  Similarity=0.268  Sum_probs=61.6

Q ss_pred             cchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCC
Q 048772          130 IPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLT  209 (333)
Q Consensus       130 lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~  209 (333)
                      +|..+..+++|++|++++|.++.+| .++++++|++|++++ +.+..+|..++.+++|++|++++|. +..+| .++.++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~  115 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLV  115 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEE-EEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCC-CCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCC
Confidence            3445666666666666666666665 566666666666666 4455666555555666666666665 45554 455566


Q ss_pred             CCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcc
Q 048772          210 GLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRM  250 (333)
Q Consensus       210 ~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~  250 (333)
                      +|++|++.++....      ...+..+..+++|+. |++.+
T Consensus       116 ~L~~L~l~~N~i~~------~~~~~~l~~l~~L~~-L~l~~  149 (198)
T 1ds9_A          116 NLRVLYMSNNKITN------WGEIDKLAALDKLED-LLLAG  149 (198)
T ss_dssp             HSSEEEESEEECCC------HHHHHHHTTTTTCSE-EEECS
T ss_pred             CCCEEECCCCcCCc------hhHHHHHhcCCCCCE-EEecC
Confidence            66666665554432      111234445555554 55543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.41  E-value=3.8e-13  Score=114.47  Aligned_cols=149  Identities=21%  Similarity=0.272  Sum_probs=111.9

Q ss_pred             cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-hhcCCCCC
Q 048772          111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-MEKLMNLR  188 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~  188 (333)
                      .-+.++.+++.+     ..+|..+.  ++|++|++++|.++.+ |..++++++|++|++++ +.+..+|.. +..+++|+
T Consensus        20 s~~~v~c~~~~l-----~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~   91 (229)
T 3e6j_A           20 SGTTVDCRSKRH-----ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLT   91 (229)
T ss_dssp             ETTEEECTTSCC-----SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred             eCCEeEccCCCc-----CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcC
Confidence            456788888887     77776554  8899999999999977 57789999999999999 778888865 68999999


Q ss_pred             eeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcc
Q 048772          189 HLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKE  267 (333)
Q Consensus       189 ~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~  267 (333)
                      +|++++|. +..+|.. ++.+++|++|++.++....     .+   ..+..+++|+. |++.+.    .........+..
T Consensus        92 ~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~-----lp---~~~~~l~~L~~-L~L~~N----~l~~~~~~~~~~  157 (229)
T 3e6j_A           92 VLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLTE-----LP---RGIERLTHLTH-LALDQN----QLKSIPHGAFDR  157 (229)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCS-----CC---TTGGGCTTCSE-EECCSS----CCCCCCTTTTTT
T ss_pred             EEECCCCc-CCccChhHhCcchhhCeEeccCCcccc-----cC---cccccCCCCCE-EECCCC----cCCccCHHHHhC
Confidence            99999998 7788765 6899999999998776553     22   23455555665 666542    112222345677


Q ss_pred             cCCCCceEEEeccC
Q 048772          268 KKNLDRLELWFDNV  281 (333)
Q Consensus       268 l~~L~~L~l~~~~~  281 (333)
                      +++|+.|++++|..
T Consensus       158 l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          158 LSSLTHAYLFGNPW  171 (229)
T ss_dssp             CTTCCEEECTTSCB
T ss_pred             CCCCCEEEeeCCCc
Confidence            78888888877653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.41  E-value=5.3e-13  Score=112.86  Aligned_cols=147  Identities=15%  Similarity=0.281  Sum_probs=80.1

Q ss_pred             cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcC-ChhhhcCCCCCee
Q 048772          113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRL-PQGMEKLMNLRHL  190 (333)
Q Consensus       113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L  190 (333)
                      +.++++++.+     ..+|..+.  +.|+.|++++|.++.+|. .+..+++|++|++++ +.+..+ |..+.++++|++|
T Consensus        14 ~~v~c~~~~l-----~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L   85 (220)
T 2v9t_B           14 NIVDCRGKGL-----TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSL   85 (220)
T ss_dssp             TEEECTTSCC-----SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS-SCCCEECTTTTTTCSSCCEE
T ss_pred             CEEEcCCCCc-----CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC-CcCCCcCHHHhhCCcCCCEE
Confidence            3455555555     45554433  456666666666665553 556666666666666 445544 4556666666666


Q ss_pred             ecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccC
Q 048772          191 IIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKK  269 (333)
Q Consensus       191 ~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~  269 (333)
                      ++++|. +..+|.. ++.+++|++|++.++....       .....+..+++|+. |++.+.    ......+..+..++
T Consensus        86 ~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~L~~N----~l~~~~~~~~~~l~  152 (220)
T 2v9t_B           86 VLYGNK-ITELPKSLFEGLFSLQLLLLNANKINC-------LRVDAFQDLHNLNL-LSLYDN----KLQTIAKGTFSPLR  152 (220)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSS----CCSCCCTTTTTTCT
T ss_pred             ECCCCc-CCccCHhHccCCCCCCEEECCCCCCCE-------eCHHHcCCCCCCCE-EECCCC----cCCEECHHHHhCCC
Confidence            666665 5555554 4566666666666555443       12223444444554 544442    11222233455566


Q ss_pred             CCCceEEEecc
Q 048772          270 NLDRLELWFDN  280 (333)
Q Consensus       270 ~L~~L~l~~~~  280 (333)
                      +|+.|++++|.
T Consensus       153 ~L~~L~L~~N~  163 (220)
T 2v9t_B          153 AIQTMHLAQNP  163 (220)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEeCCCC
Confidence            66666666553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=1.4e-13  Score=132.36  Aligned_cols=166  Identities=14%  Similarity=0.160  Sum_probs=100.4

Q ss_pred             hhhhhHhhhcccccceEeecccccc--------c-cCCCcchHhhcccccCeee-ccCCcCcccch------hhhcc--c
Q 048772          100 KELEDVFKQFTCLRALRICGENVWE--------I-GNSKIPKAMKNLIHLRFLK-LSWLRIKELPE------TCCEL--I  161 (333)
Q Consensus       100 ~~~~~~~~~~~~L~~L~l~~~~~~~--------~-~~~~lp~~~~~l~~L~~L~-l~~~~i~~lp~------~i~~L--~  161 (333)
                      ..+|..+.+++.|+.|+++++..+.        . ....+|..++.+++|+.|+ ++.+.+..++.      .+..+  .
T Consensus       362 ~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~  441 (567)
T 1dce_A          362 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA  441 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCcc
Confidence            4567777777777777775553000        0 0134556677777777777 55544333332      12221  2


Q ss_pred             cCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCccc
Q 048772          162 NLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNH  241 (333)
Q Consensus       162 ~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~  241 (333)
                      .|++|++++ +.++.+|. ++++++|+.|++++|. +..+|..++.|++|++|++.++....         +..+..|+.
T Consensus       442 ~L~~L~Ls~-n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~---------lp~l~~l~~  509 (567)
T 1dce_A          442 DVRVLHLAH-KDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALEN---------VDGVANLPR  509 (567)
T ss_dssp             TCSEEECTT-SCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCC---------CGGGTTCSS
T ss_pred             CceEEEecC-CCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCC---------CcccCCCCC
Confidence            477777777 56777775 7777777777777776 56777777777777777776665443         124556666


Q ss_pred             ccceeEEcccCCCCCchhhh-hhcCcccCCCCceEEEeccCC
Q 048772          242 LRGLLKIRMLGDLANVDEAK-HVDLKEKKNLDRLELWFDNVG  282 (333)
Q Consensus       242 L~~~L~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~  282 (333)
                      |+. |++.+.    ...+.. +..++.+++|+.|++++|...
T Consensus       510 L~~-L~Ls~N----~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          510 LQE-LLLCNN----RLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CCE-EECCSS----CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CcE-EECCCC----CCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            665 666542    222222 566777778888888777543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=3.9e-13  Score=129.26  Aligned_cols=159  Identities=16%  Similarity=0.202  Sum_probs=102.8

Q ss_pred             hhhhHhhhcccccceE-eeccccccccCCCcch------Hhhc--ccccCeeeccCCcCcccchhhhccccCcEEeccCC
Q 048772          101 ELEDVFKQFTCLRALR-ICGENVWEIGNSKIPK------AMKN--LIHLRFLKLSWLRIKELPETCCELINLETLEINRC  171 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~lp~------~~~~--l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~  171 (333)
                      .++..+.++++|+.|+ ++.+.+     ..++.      .+..  ...|++|++++|.++.+|. ++++++|++|++++ 
T Consensus       400 ~~~~~l~~l~~L~~L~~l~~n~~-----~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~-  472 (567)
T 1dce_A          400 YEKETLQYFSTLKAVDPMRAAYL-----DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSH-  472 (567)
T ss_dssp             GHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCS-
T ss_pred             CCHHHHHHHHhcccCcchhhccc-----chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCc-
Confidence            4556667777777777 454433     22221      1111  1257888888888888886 88888888888888 


Q ss_pred             CCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEccc
Q 048772          172 TRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRML  251 (333)
Q Consensus       172 ~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~  251 (333)
                      +.+..+|..+++|++|++|++++|. +..+| .++.|++|++|++.++....      ...+..+..|++|+. |++.+.
T Consensus       473 N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~------~~~p~~l~~l~~L~~-L~L~~N  543 (567)
T 1dce_A          473 NRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQ------SAAIQPLVSCPRLVL-LNLQGN  543 (567)
T ss_dssp             SCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCS------SSTTGGGGGCTTCCE-EECTTS
T ss_pred             ccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCC------CCCcHHHhcCCCCCE-EEecCC
Confidence            6677888888888888888888887 67777 78888888888887776554      111455666666775 666652


Q ss_pred             CCCCCchhhhhhcCcccCCCCceEE
Q 048772          252 GDLANVDEAKHVDLKEKKNLDRLEL  276 (333)
Q Consensus       252 ~~~~~~~~~~~~~l~~l~~L~~L~l  276 (333)
                      .- ..........+..+++|+.|++
T Consensus       544 ~l-~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          544 SL-CQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cC-CCCccHHHHHHHHCcccCccCC
Confidence            21 1111111122334677877753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.40  E-value=3.3e-13  Score=126.48  Aligned_cols=98  Identities=20%  Similarity=0.268  Sum_probs=62.0

Q ss_pred             ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772          110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH  189 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~  189 (333)
                      ++|++|++++|.+     ..+|..   .++|++|++++|.++.+| .++++++|++|++++ +.+..+|..+   .+|++
T Consensus       111 ~~L~~L~l~~n~l-----~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~-N~l~~lp~~~---~~L~~  177 (454)
T 1jl5_A          111 QSLKSLLVDNNNL-----KALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN-NSLKKLPDLP---PSLEF  177 (454)
T ss_dssp             TTCCEEECCSSCC-----SCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-SCCSCCCCCC---TTCCE
T ss_pred             CCCcEEECCCCcc-----CcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC-CcCcccCCCc---ccccE
Confidence            4566666666655     333321   146777777777777776 477777777777777 5566666533   46777


Q ss_pred             eecccccccccCchhhcCCCCCCccceEEeCCC
Q 048772          190 LIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       190 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~  222 (333)
                      |++++|. +..+| .++.+++|++|++.++...
T Consensus       178 L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          178 IAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             EECCSSC-CSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred             EECcCCc-CCcCc-cccCCCCCCEEECCCCcCC
Confidence            7777776 55666 4677777777776655443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.39  E-value=2e-13  Score=124.16  Aligned_cols=151  Identities=18%  Similarity=0.176  Sum_probs=83.5

Q ss_pred             cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchh-hh-ccccCcEEeccCCCCCCcCCh-hhhcCCCCCe
Q 048772          113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPET-CC-ELINLETLEINRCTRLKRLPQ-GMEKLMNLRH  189 (333)
Q Consensus       113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-i~-~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~  189 (333)
                      ++++++++.+     ..+|..+.  ..+++|++++|.++.+|.. +. ++.+|++|++++ +.+..+|. .+.++++|++
T Consensus        21 ~~l~c~~~~l-----~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~   92 (361)
T 2xot_A           21 NILSCSKQQL-----PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRY   92 (361)
T ss_dssp             TEEECCSSCC-----SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCE
T ss_pred             CEEEeCCCCc-----CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCE
Confidence            4566666666     55555433  3466777777777666543 33 667777777776 55666553 4667777777


Q ss_pred             eecccccccccCch-hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCccc
Q 048772          190 LIIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEK  268 (333)
Q Consensus       190 L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l  268 (333)
                      |++++|. +..+|. .+..+++|++|++.++....       .....+..+++|+. |++.+..- ..........+..+
T Consensus        93 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~-------~~~~~~~~l~~L~~-L~L~~N~l-~~l~~~~~~~~~~l  162 (361)
T 2xot_A           93 LDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVV-------VDRNAFEDMAQLQK-LYLSQNQI-SRFPVELIKDGNKL  162 (361)
T ss_dssp             EECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCE-------ECTTTTTTCTTCCE-EECCSSCC-CSCCGGGTC----C
T ss_pred             EECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccE-------ECHHHhCCcccCCE-EECCCCcC-CeeCHHHhcCcccC
Confidence            7777766 555554 36667777777766655443       12233444455554 55544211 11111111112567


Q ss_pred             CCCCceEEEeccC
Q 048772          269 KNLDRLELWFDNV  281 (333)
Q Consensus       269 ~~L~~L~l~~~~~  281 (333)
                      ++|+.|+|+.|.+
T Consensus       163 ~~L~~L~L~~N~l  175 (361)
T 2xot_A          163 PKLMLLDLSSNKL  175 (361)
T ss_dssp             TTCCEEECCSSCC
T ss_pred             CcCCEEECCCCCC
Confidence            7888888887753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.39  E-value=1.1e-12  Score=127.48  Aligned_cols=137  Identities=22%  Similarity=0.242  Sum_probs=110.6

Q ss_pred             hhhHHHHHHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccch-h
Q 048772           79 VFDEWITASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELPE-T  156 (333)
Q Consensus        79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~  156 (333)
                      ++..+...++.+.+.+.. .....+..|.++++|++|++++|.+     ..+|+ .|.++++|++|+|++|.++.+|. .
T Consensus        46 vP~~lp~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i-----~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~  119 (635)
T 4g8a_A           46 IPDNLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQSLALGA  119 (635)
T ss_dssp             CCSSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred             cCCCCCcCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcC-----CCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence            344444456666665543 3333456789999999999999998     66654 58999999999999999999985 6


Q ss_pred             hhccccCcEEeccCCCCCCcCCh-hhhcCCCCCeeecccccccc--cCchhhcCCCCCCccceEEeCCCC
Q 048772          157 CCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLE--YMPRGIERLTGLRTLSEFVVGRTG  223 (333)
Q Consensus       157 i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~~~~~  223 (333)
                      +++|++|++|++++ +.+..+|. .|++|++|++|++++|. +.  .+|..++.+++|++|++.++....
T Consensus       120 f~~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          120 FSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             GTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             hcCCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccc
Confidence            89999999999999 67888876 48999999999999998 44  457789999999999998776543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.39  E-value=3.2e-13  Score=122.91  Aligned_cols=195  Identities=13%  Similarity=0.079  Sum_probs=105.5

Q ss_pred             ccccceEeeccccccccCCCcchH----hhcc-cccCeeeccCCcCcccc-hhhhc-----cccCcEEeccCCCCCC---
Q 048772          110 TCLRALRICGENVWEIGNSKIPKA----MKNL-IHLRFLKLSWLRIKELP-ETCCE-----LINLETLEINRCTRLK---  175 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~~----~~~l-~~L~~L~l~~~~i~~lp-~~i~~-----L~~L~~L~l~~~~~~~---  175 (333)
                      +.|++|++++|.+.    ...+..    +..+ ++|++|++++|.++..+ ..++.     ..+|++|++++ +.++   
T Consensus        80 ~~L~~L~Ls~n~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~  154 (362)
T 3goz_A           80 ANVTSLNLSGNFLS----YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKS  154 (362)
T ss_dssp             TTCCEEECCSSCGG----GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSC
T ss_pred             CCccEEECcCCcCC----hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHH
Confidence            67777777777762    122232    3333 67777777777766544 23322     24777777777 4444   


Q ss_pred             --cCChhhhcCC-CCCeeecccccccccC-ch----hhcCC-CCCCccceEEeCCCCCcccCcccchhhhcCc-ccccce
Q 048772          176 --RLPQGMEKLM-NLRHLIIMNHVYLEYM-PR----GIERL-TGLRTLSEFVVGRTGGEHASKVCKLEALKGM-NHLRGL  245 (333)
Q Consensus       176 --~lp~~~~~L~-~L~~L~l~~~~~l~~~-p~----~i~~L-~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L-~~L~~~  245 (333)
                        .++..+..++ +|++|++++|. ++.. +.    .+..+ ++|++|++.++.....+   .......+..+ +.|+. 
T Consensus       155 ~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~---~~~l~~~l~~~~~~L~~-  229 (362)
T 3goz_A          155 SDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKS---YAELAYIFSSIPNHVVS-  229 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC---HHHHHHHHHHSCTTCCE-
T ss_pred             HHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH---HHHHHHHHhcCCCCceE-
Confidence              3444455555 77777777776 3333 22    23444 47777777665543200   00112233332 35665 


Q ss_pred             eEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772          246 LKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI  322 (333)
Q Consensus       246 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~  322 (333)
                      |++.+..-.......+...+..+++|+.|++++|....     ........+.+.+..   +++|+.|++++|.+..
T Consensus       230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~-----i~~~~~~~l~~~~~~---l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN-----MSKEQCKALGAAFPN---IQKIILVDKNGKEIHP  298 (362)
T ss_dssp             EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT-----CCHHHHHHHHTTSTT---CCEEEEECTTSCBCCG
T ss_pred             EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc-----cCHHHHHHHHHHhcc---CCceEEEecCCCcCCC
Confidence            66655332222223444556677778888888773211     112223334555556   7778888888877654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.38  E-value=5.9e-13  Score=121.09  Aligned_cols=195  Identities=9%  Similarity=0.078  Sum_probs=122.7

Q ss_pred             hHhhhcc-cccceEeeccccccccCCCcchHhhcc-----cccCeeeccCCcCcccc-hhhhc----c-ccCcEEeccCC
Q 048772          104 DVFKQFT-CLRALRICGENVWEIGNSKIPKAMKNL-----IHLRFLKLSWLRIKELP-ETCCE----L-INLETLEINRC  171 (333)
Q Consensus       104 ~~~~~~~-~L~~L~l~~~~~~~~~~~~lp~~~~~l-----~~L~~L~l~~~~i~~lp-~~i~~----L-~~L~~L~l~~~  171 (333)
                      ..+..++ +|++|++++|.+.    ...+..+..+     ++|++|++++|.++..+ ..++.    + ++|++|++++ 
T Consensus        44 ~~l~~~~~~L~~L~Ls~N~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-  118 (362)
T 3goz_A           44 QAFANTPASVTSLNLSGNSLG----FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW-  118 (362)
T ss_dssp             HHHHTCCTTCCEEECCSSCGG----GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS-
T ss_pred             HHHHhCCCceeEEECcCCCCC----HHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcC-
Confidence            5667777 8999999999872    2224556554     88999999999887443 44443    3 7899999998 


Q ss_pred             CCCCcCCh-hh----hc-CCCCCeeecccccccc-----cCchhhcCCC-CCCccceEEeCCCCCcccCcccch-hhhcC
Q 048772          172 TRLKRLPQ-GM----EK-LMNLRHLIIMNHVYLE-----YMPRGIERLT-GLRTLSEFVVGRTGGEHASKVCKL-EALKG  238 (333)
Q Consensus       172 ~~~~~lp~-~~----~~-L~~L~~L~l~~~~~l~-----~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~~~~~-~~L~~  238 (333)
                      +.++..+. .+    .. .++|++|++++|. ++     .++..+..++ +|++|++.++.....    ....+ ..+..
T Consensus       119 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~----~~~~l~~~l~~  193 (362)
T 3goz_A          119 NDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASK----NCAELAKFLAS  193 (362)
T ss_dssp             SCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS----CHHHHHHHHHT
T ss_pred             CcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchh----hHHHHHHHHHh
Confidence            55666553 23    33 2589999999887 44     3445566665 888888877765430    11111 23344


Q ss_pred             c-ccccceeEEcccCCCCCchhhhhhcCcc-cCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEe
Q 048772          239 M-NHLRGLLKIRMLGDLANVDEAKHVDLKE-KKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYS  316 (333)
Q Consensus       239 L-~~L~~~L~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~  316 (333)
                      . +.|+. |++.+..-.......++..+.. .++|++|++++|.......    ..    +...+..   +++|+.|+++
T Consensus       194 ~~~~L~~-L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----~~----l~~~~~~---l~~L~~L~L~  261 (362)
T 3goz_A          194 IPASVTS-LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL----EN----LKLLKDS---LKHLQTVYLD  261 (362)
T ss_dssp             SCTTCCE-EECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH----HH----HHHTTTT---TTTCSEEEEE
T ss_pred             CCCCCCE-EECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH----HH----HHHHHhc---CCCccEEEec
Confidence            4 46776 7777643211222335555655 3589999998885433211    11    3344456   7789999998


Q ss_pred             eecC
Q 048772          317 RYGI  320 (333)
Q Consensus       317 ~~~~  320 (333)
                      +|..
T Consensus       262 ~n~l  265 (362)
T 3goz_A          262 YDIV  265 (362)
T ss_dssp             HHHH
T ss_pred             cCCc
Confidence            8873

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.38  E-value=9.2e-14  Score=130.24  Aligned_cols=168  Identities=18%  Similarity=0.137  Sum_probs=86.2

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhh-cccccCeeeccCCcCcc-----cchhhhccccCcEEeccCCCCCC
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMK-NLIHLRFLKLSWLRIKE-----LPETCCELINLETLEINRCTRLK  175 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~-~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~  175 (333)
                      ++..+..+++|++|++++|.+.+.+...+...+. ..++|++|++++|.++.     +|..+..+++|++|++++ +.+.
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~  240 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS-NKLG  240 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS-SBCH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC-CcCC
Confidence            3445556667777777776652110011111111 24467777777766654     456666667777777776 3343


Q ss_pred             cC-----Chh-hhcCCCCCeeeccccccccc-----CchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcC-----c
Q 048772          176 RL-----PQG-MEKLMNLRHLIIMNHVYLEY-----MPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKG-----M  239 (333)
Q Consensus       176 ~l-----p~~-~~~L~~L~~L~l~~~~~l~~-----~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~-----L  239 (333)
                      ..     +.. +..+++|++|++++|. ++.     +|..+.++++|++|++.++....       ..+..+..     .
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-------~~~~~l~~~l~~~~  312 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGD-------EGARLLCETLLEPG  312 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHH-------HHHHHHHHHHTSTT
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCch-------HHHHHHHHHhccCC
Confidence            21     111 2246677777777765 444     55556667777777766554322       11111111     1


Q ss_pred             ccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEec
Q 048772          240 NHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFD  279 (333)
Q Consensus       240 ~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  279 (333)
                      +.|+. |++.+..-.......++..+..+++|++|++++|
T Consensus       313 ~~L~~-L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          313 CQLES-LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN  351 (461)
T ss_dssp             CCCCE-EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             cccee-eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence            34554 5555433211122234455566677777777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.36  E-value=1.6e-12  Score=109.88  Aligned_cols=105  Identities=18%  Similarity=0.269  Sum_probs=59.2

Q ss_pred             cccceEeeccccccccCCCcc--hHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772          111 CLRALRICGENVWEIGNSKIP--KAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQG-MEKLMN  186 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~  186 (333)
                      .+++|++++|.+     ..++  ..+..+++|++|++++|.++.+|. .++++++|++|++++ +.+..+|.. +..+++
T Consensus        33 ~~~~L~L~~N~l-----~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~  106 (220)
T 2v70_A           33 YTAELRLNNNEF-----TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS-NRLENVQHKMFKGLES  106 (220)
T ss_dssp             TCSEEECCSSCC-----CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCGGGGTTCSS
T ss_pred             CCCEEEcCCCcC-----CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC-CccCccCHhHhcCCcC
Confidence            345666666665     3332  225556666666666666665553 556666666666666 445555433 556666


Q ss_pred             CCeeecccccccccC-chhhcCCCCCCccceEEeCCC
Q 048772          187 LRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       187 L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~  222 (333)
                      |++|++++|. +..+ |..++.+++|++|++.++...
T Consensus       107 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A          107 LKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             CCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred             CCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCC
Confidence            6666666665 3333 344666666666666555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.35  E-value=7.1e-13  Score=107.96  Aligned_cols=106  Identities=23%  Similarity=0.282  Sum_probs=84.5

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhccc-ccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhh-hcC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLI-HLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGM-EKL  184 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~-~~L  184 (333)
                      .+++.|++|++++|.+     ..+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++ +.+..+|..+ +.+
T Consensus        16 ~~~~~L~~L~l~~n~l-----~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l   87 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKI-----PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN-NRICRIGEGLDQAL   87 (176)
T ss_dssp             ECTTSCEEEECTTSCC-----CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS-SCCCEECSCHHHHC
T ss_pred             CCcCCceEEEeeCCCC-----chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC-CcccccCcchhhcC
Confidence            4567889999999988     56654 55554 899999999998887 5788899999999998 6788888665 889


Q ss_pred             CCCCeeecccccccccCch--hhcCCCCCCccceEEeCC
Q 048772          185 MNLRHLIIMNHVYLEYMPR--GIERLTGLRTLSEFVVGR  221 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~  221 (333)
                      ++|++|++++|. +..+|.  .++.+++|++|++.++..
T Consensus        88 ~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           88 PDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             TTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             CCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC
Confidence            999999999987 677776  678888888888765543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.35  E-value=1.7e-13  Score=135.56  Aligned_cols=113  Identities=20%  Similarity=0.127  Sum_probs=92.4

Q ss_pred             CCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcC
Q 048772          128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIER  207 (333)
Q Consensus       128 ~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~  207 (333)
                      ...|..+..++.|+.|+|++|.+..+|..++++++|++|+|++ +.+..+|..|++|++|++|++++|. +..+|..++.
T Consensus       214 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~  291 (727)
T 4b8c_D          214 VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNG-NSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS  291 (727)
T ss_dssp             --------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTT-SCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred             ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeC-CcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcC
Confidence            3446678899999999999999999999999999999999999 7788999999999999999999999 7799999999


Q ss_pred             CCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEccc
Q 048772          208 LTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRML  251 (333)
Q Consensus       208 L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~  251 (333)
                      |++|++|++.++....        .+..+..|++|+. |++.+.
T Consensus       292 l~~L~~L~L~~N~l~~--------lp~~~~~l~~L~~-L~L~~N  326 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVTT--------LPWEFGNLCNLQF-LGVEGN  326 (727)
T ss_dssp             GTTCSEEECCSSCCCC--------CCSSTTSCTTCCC-EECTTS
T ss_pred             CCCCCEEECCCCCCCc--------cChhhhcCCCccE-EeCCCC
Confidence            9999999998876543        2334667777776 777763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.35  E-value=1.2e-12  Score=106.53  Aligned_cols=110  Identities=20%  Similarity=0.211  Sum_probs=95.0

Q ss_pred             hhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhh-hccccCcEEeccCCCCCCcCCh--
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETC-CELINLETLEINRCTRLKRLPQ--  179 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~~lp~--  179 (333)
                      +.+....++|++|++++|.+     ..+ ..+..+++|++|++++|.++.+|..+ +.+++|++|++++ +.+..+|.  
T Consensus        35 ~~~~~~~~~L~~L~Ls~N~l-----~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~  107 (176)
T 1a9n_A           35 ENLGATLDQFDAIDFSDNEI-----RKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN-NSLVELGDLD  107 (176)
T ss_dssp             CCGGGGTTCCSEEECCSSCC-----CEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS-CCCCCGGGGG
T ss_pred             HHhhhcCCCCCEEECCCCCC-----Ccc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC-CcCCcchhhH
Confidence            44333345999999999998     555 56889999999999999999998655 9999999999999 77899987  


Q ss_pred             hhhcCCCCCeeecccccccccCchh----hcCCCCCCccceEEeC
Q 048772          180 GMEKLMNLRHLIIMNHVYLEYMPRG----IERLTGLRTLSEFVVG  220 (333)
Q Consensus       180 ~~~~L~~L~~L~l~~~~~l~~~p~~----i~~L~~L~~L~~~~~~  220 (333)
                      .++.+++|++|++++|. +..+|..    ++.+++|+.|++..+.
T Consensus       108 ~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          108 PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             hhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            79999999999999998 7788875    8999999999988765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.33  E-value=1.2e-12  Score=122.65  Aligned_cols=97  Identities=21%  Similarity=0.286  Sum_probs=70.5

Q ss_pred             ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772          110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH  189 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~  189 (333)
                      ++|++|++++|.+     ..+| .++.+++|++|++++|.++.+|..+   .+|++|++++ +.+..+| +++++++|++
T Consensus       131 ~~L~~L~L~~n~l-----~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~-n~l~~l~-~~~~l~~L~~  199 (454)
T 1jl5_A          131 PLLEYLGVSNNQL-----EKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGN-NQLEELP-ELQNLPFLTA  199 (454)
T ss_dssp             TTCCEEECCSSCC-----SSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCS-SCCSSCC-CCTTCTTCCE
T ss_pred             CCCCEEECcCCCC-----CCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcC-CcCCcCc-cccCCCCCCE
Confidence            5788888888887     5677 5888888888888888888777643   4788888887 5677777 5778888888


Q ss_pred             eecccccccccCchhhcCCCCCCccceEEeCC
Q 048772          190 LIIMNHVYLEYMPRGIERLTGLRTLSEFVVGR  221 (333)
Q Consensus       190 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~  221 (333)
                      |++++|. +..+|...   ++|++|++.++..
T Consensus       200 L~l~~N~-l~~l~~~~---~~L~~L~l~~n~l  227 (454)
T 1jl5_A          200 IYADNNS-LKKLPDLP---LSLESIVAGNNIL  227 (454)
T ss_dssp             EECCSSC-CSSCCCCC---TTCCEEECCSSCC
T ss_pred             EECCCCc-CCcCCCCc---CcccEEECcCCcC
Confidence            8887776 55555432   3566666655543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.33  E-value=1.4e-13  Score=128.91  Aligned_cols=197  Identities=15%  Similarity=0.109  Sum_probs=123.0

Q ss_pred             hhhhHhhhcccccceEeeccccccccCCCcchHh-hccc----ccCeeeccCCcCc-----ccchhhhccccCcEEeccC
Q 048772          101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAM-KNLI----HLRFLKLSWLRIK-----ELPETCCELINLETLEINR  170 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~-~~l~----~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~  170 (333)
                      .++..+..+++|++|++++|.+.    ...+..+ ..++    +|++|++++|.++     .+|..+.++++|++|++++
T Consensus        47 ~l~~~l~~~~~L~~L~Ls~n~l~----~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~  122 (461)
T 1z7x_W           47 DISSALRVNPALAELNLRSNELG----DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD  122 (461)
T ss_dssp             HHHHHHHTCTTCCEEECTTCCCH----HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred             HHHHHHHhCCCcCEEeCCCCcCC----hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCC
Confidence            45566777788888888888762    1112233 3344    5888888888876     4577788888888888888


Q ss_pred             CCCCCcC-Chhhh-----cCCCCCeeeccccccccc-----CchhhcCCCCCCccceEEeCCCCCcccCcccchhhhc--
Q 048772          171 CTRLKRL-PQGME-----KLMNLRHLIIMNHVYLEY-----MPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALK--  237 (333)
Q Consensus       171 ~~~~~~l-p~~~~-----~L~~L~~L~l~~~~~l~~-----~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~--  237 (333)
                       +.+... +..+.     ..++|++|++++|. +..     ++..+..+++|++|++.++....       ..+..+.  
T Consensus       123 -n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-------~~~~~l~~~  193 (461)
T 1z7x_W          123 -NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINE-------AGVRVLCQG  193 (461)
T ss_dssp             -SBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHH-------HHHHHHHHH
T ss_pred             -CcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcch-------HHHHHHHHH
Confidence             445421 22222     24578888888886 332     35557778888888887665432       2222222  


Q ss_pred             ---CcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhc-cCCCCCCCceee
Q 048772          238 ---GMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSV-RVCLLWDNCHPL  313 (333)
Q Consensus       238 ---~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~L~~L  313 (333)
                         .++.|+. |++.+..-.......++..+..+++|++|++++|..     +   ......+...+ .+   +++|++|
T Consensus       194 l~~~~~~L~~-L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-----~---~~~~~~l~~~~~~~---~~~L~~L  261 (461)
T 1z7x_W          194 LKDSPCQLEA-LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL-----G---DVGMAELCPGLLHP---SSRLRTL  261 (461)
T ss_dssp             HHHSCCCCCE-EECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC-----H---HHHHHHHHHHHTST---TCCCCEE
T ss_pred             HhcCCCCceE-EEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC-----C---hHHHHHHHHHHhcC---CCCceEE
Confidence               2446665 777764332222334566777889999999987742     1   11111133333 35   7889999


Q ss_pred             EEeeecChh
Q 048772          314 KYSRYGIWI  322 (333)
Q Consensus       314 ~l~~~~~~~  322 (333)
                      ++++|.+..
T Consensus       262 ~L~~n~l~~  270 (461)
T 1z7x_W          262 WIWECGITA  270 (461)
T ss_dssp             ECTTSCCCH
T ss_pred             ECcCCCCCH
Confidence            999987754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.33  E-value=3.7e-12  Score=105.40  Aligned_cols=105  Identities=26%  Similarity=0.390  Sum_probs=85.0

Q ss_pred             ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNL  187 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L  187 (333)
                      +.|++|++++|.+     ..+|..+..+++|++|++++|.++.++ ..+.++++|++|++++ +.+..+|. .+..+++|
T Consensus        31 ~~l~~L~L~~n~i-----~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L  104 (193)
T 2wfh_A           31 RDVTELYLDGNQF-----TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSL  104 (193)
T ss_dssp             TTCCEEECCSSCC-----CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTC
T ss_pred             CCCCEEECCCCcC-----chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCC
Confidence            5788888888888     677878888888888998888888776 4688888888898888 66777764 58888888


Q ss_pred             CeeecccccccccCchh-hcCCCCCCccceEEeCC
Q 048772          188 RHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGR  221 (333)
Q Consensus       188 ~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~  221 (333)
                      ++|++++|. +..+|.. +..+++|++|++.++..
T Consensus       105 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          105 RLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence            888888887 6777764 77888888888876654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.32  E-value=1.1e-12  Score=119.38  Aligned_cols=155  Identities=18%  Similarity=0.181  Sum_probs=95.3

Q ss_pred             ccccceEeeccccccccCCCcchH-hh-cccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPKA-MK-NLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLM  185 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~~-~~-~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~  185 (333)
                      +.++.|++++|.+     ..++.. +. .+++|++|++++|.++.+| ..+.++++|++|+|++ +.+..+|. .+.+++
T Consensus        39 ~~l~~L~Ls~N~l-----~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~  112 (361)
T 2xot_A           39 SYTALLDLSHNNL-----SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQ  112 (361)
T ss_dssp             TTCSEEECCSSCC-----CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCT
T ss_pred             CCCCEEECCCCCC-----CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC-CcCCcCCHHHhCCCc
Confidence            3477788888877     555443 34 6788888888888887776 4577888888888887 56776654 467788


Q ss_pred             CCCeeecccccccccC-chhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772          186 NLRHLIIMNHVYLEYM-PRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD  264 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~  264 (333)
                      +|++|++++|. +..+ |..++.+++|++|++.++....    .....+..+..+++|+. |++.+..    ....-...
T Consensus       113 ~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~----l~~~~~~~~~~l~~L~~-L~L~~N~----l~~l~~~~  182 (361)
T 2xot_A          113 ALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISR----FPVELIKDGNKLPKLML-LDLSSNK----LKKLPLTD  182 (361)
T ss_dssp             TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCS----CCGGGTC----CTTCCE-EECCSSC----CCCCCHHH
T ss_pred             CCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCe----eCHHHhcCcccCCcCCE-EECCCCC----CCccCHHH
Confidence            88888888877 4444 4557788888888877766544    11112222245566665 6665421    11111223


Q ss_pred             CcccCC--CCceEEEecc
Q 048772          265 LKEKKN--LDRLELWFDN  280 (333)
Q Consensus       265 l~~l~~--L~~L~l~~~~  280 (333)
                      +..++.  |+.|+|+.|.
T Consensus       183 ~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          183 LQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             HHHSCHHHHTTEECCSSC
T ss_pred             hhhccHhhcceEEecCCC
Confidence            444444  3667777554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=2.4e-13  Score=113.01  Aligned_cols=113  Identities=24%  Similarity=0.312  Sum_probs=100.3

Q ss_pred             hhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh
Q 048772          100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ  179 (333)
Q Consensus       100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~  179 (333)
                      ..++..+..++.|++|++++|.+     ..+| .+..+++|++|++++|.++.+|..++.+++|++|++++ +.+..+| 
T Consensus        38 ~~l~~~~~~l~~L~~L~ls~n~l-----~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~-  109 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALSTNNI-----EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS-  109 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECSEEEE-----SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-EECCCHH-
T ss_pred             hhhhHHHhcCCCCCEEECCCCCC-----cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-CcCCcCC-
Confidence            44566889999999999999998     6788 89999999999999999999999999999999999999 6788887 


Q ss_pred             hhhcCCCCCeeecccccccccCch--hhcCCCCCCccceEEeCC
Q 048772          180 GMEKLMNLRHLIIMNHVYLEYMPR--GIERLTGLRTLSEFVVGR  221 (333)
Q Consensus       180 ~~~~L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~  221 (333)
                      .++++++|++|++++|. +..+|.  .++.+++|++|++.++..
T Consensus       110 ~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          110 GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence            69999999999999998 777664  689999999999876643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.28  E-value=5.2e-12  Score=104.36  Aligned_cols=106  Identities=18%  Similarity=0.255  Sum_probs=70.8

Q ss_pred             cccceEeeccccccccCCCcchH--hhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCCh-hhhcCCC
Q 048772          111 CLRALRICGENVWEIGNSKIPKA--MKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQ-GMEKLMN  186 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~~--~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~  186 (333)
                      .+++|++++|.+     ..+|..  +..+++|++|++++|.++.+ |..++++++|++|++++ +.+..+|. .+.++++
T Consensus        30 ~l~~L~l~~n~i-----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~  103 (192)
T 1w8a_A           30 HTTELLLNDNEL-----GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQ  103 (192)
T ss_dssp             TCSEEECCSCCC-----CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTT
T ss_pred             CCCEEECCCCcC-----CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCC
Confidence            677777777776     455442  66777777777777777755 56677777777777777 55665544 3667777


Q ss_pred             CCeeecccccccccCchhhcCCCCCCccceEEeCCC
Q 048772          187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~  222 (333)
                      |++|++++|......|..++.+++|++|++.++...
T Consensus       104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            777777777633334556777777777777655543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.28  E-value=1.1e-11  Score=102.57  Aligned_cols=102  Identities=19%  Similarity=0.288  Sum_probs=86.8

Q ss_pred             cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCeee
Q 048772          113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHLI  191 (333)
Q Consensus       113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~  191 (333)
                      ++++++++.+     ..+|..+.  +.|++|++++|.++.+|..+.++++|++|++++ +.+..++. .|.++++|++|+
T Consensus        13 ~~l~~~~~~l-----~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~   84 (193)
T 2wfh_A           13 TVVRCSNKGL-----KVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLI   84 (193)
T ss_dssp             TEEECTTSCC-----SSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCC-----CcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEE
Confidence            5788889888     77776553  589999999999999999999999999999999 77888764 589999999999


Q ss_pred             cccccccccCch-hhcCCCCCCccceEEeCCCC
Q 048772          192 IMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTG  223 (333)
Q Consensus       192 l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~  223 (333)
                      +++|. +..+|. .++.+++|++|++.++....
T Consensus        85 Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~  116 (193)
T 2wfh_A           85 LSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISV  116 (193)
T ss_dssp             CCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence            99998 677765 58999999999988776543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.26  E-value=7.4e-12  Score=103.42  Aligned_cols=121  Identities=18%  Similarity=0.266  Sum_probs=96.8

Q ss_pred             cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchh--hhccccCcEEeccCCCCCCcC-ChhhhcCCCCCe
Q 048772          113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPET--CCELINLETLEINRCTRLKRL-PQGMEKLMNLRH  189 (333)
Q Consensus       113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~--i~~L~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~  189 (333)
                      ++++++++.+     ..+|..+..  +|++|++++|.++.+|..  ++++++|++|++++ +.+..+ |..+.++++|++
T Consensus        11 ~~l~~s~~~l-----~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~   82 (192)
T 1w8a_A           11 TTVDCTGRGL-----KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCC-----SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCE
T ss_pred             CEEEcCCCCc-----CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcCCcccCCE
Confidence            7889999988     777876543  899999999999988864  89999999999999 667766 678999999999


Q ss_pred             eecccccccccCch-hhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcc
Q 048772          190 LIIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRM  250 (333)
Q Consensus       190 L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~  250 (333)
                      |++++|. +..+|. .++.+++|++|++.++....       .....+..+++|+. |++.+
T Consensus        83 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~-L~L~~  135 (192)
T 1w8a_A           83 LQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISC-------VMPGSFEHLNSLTS-LNLAS  135 (192)
T ss_dssp             EECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCE-------ECTTSSTTCTTCCE-EECTT
T ss_pred             EECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCe-------eCHHHhhcCCCCCE-EEeCC
Confidence            9999998 666654 48899999999998877654       22344556666775 76665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.25  E-value=7.6e-12  Score=120.87  Aligned_cols=93  Identities=11%  Similarity=0.083  Sum_probs=60.2

Q ss_pred             hhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-----ccchhhhccccCcEEeccCCCCCC
Q 048772          101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCTRLK  175 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~  175 (333)
                      .+......+++|++|++++|.+.+.+...++.....+++|+.|++++|.++     .++..+.++++|++|++++ +.+.
T Consensus       155 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~  233 (592)
T 3ogk_B          155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD-FEIL  233 (592)
T ss_dssp             HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS-CBGG
T ss_pred             HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC-ccHH
Confidence            345555678889999998887632211114445566777888888777764     4455566777788888777 4455


Q ss_pred             cCChhhhcCCCCCeeeccc
Q 048772          176 RLPQGMEKLMNLRHLIIMN  194 (333)
Q Consensus       176 ~lp~~~~~L~~L~~L~l~~  194 (333)
                      .+|..+.++++|++|+++.
T Consensus       234 ~l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          234 ELVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             GGHHHHHHCTTCCEEEECB
T ss_pred             HHHHHHhhhhHHHhhcccc
Confidence            5666666666666666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.23  E-value=1.5e-11  Score=99.95  Aligned_cols=103  Identities=23%  Similarity=0.368  Sum_probs=87.4

Q ss_pred             ccceEeeccccccccCCCcchHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-hhcCCCCCe
Q 048772          112 LRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-MEKLMNLRH  189 (333)
Q Consensus       112 L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~  189 (333)
                      -+.++++++.+     ..+|..+.  ++|++|++++|.++.+ |..++++++|++|+|++ +.+..+|.. +.++++|++
T Consensus        14 ~~~l~~~~n~l-----~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNIRL-----ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSSCC-----SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred             CcEEEeCCCCC-----CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhE
Confidence            36788999988     77787654  7899999999999987 46789999999999999 788989876 578999999


Q ss_pred             eecccccccccCchh-hcCCCCCCccceEEeCCCC
Q 048772          190 LIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTG  223 (333)
Q Consensus       190 L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~  223 (333)
                      |++++|. +..+|.. ++.+++|++|++.++....
T Consensus        86 L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           86 LDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             EECCCCc-cceeCHHHhccccCCCEEEeCCCCccc
Confidence            9999998 7888876 8899999999998776543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.23  E-value=2.9e-12  Score=115.99  Aligned_cols=101  Identities=19%  Similarity=0.190  Sum_probs=55.7

Q ss_pred             ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCc-ccch-hhhccccCcEEeccCCCCCCcCC-hhhhcCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIK-ELPE-TCCELINLETLEINRCTRLKRLP-QGMEKLM  185 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~-~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~~~~L~  185 (333)
                      ++++.|++++|++     ..+|. .|.++++|++|++++|.+. .+|. .+.++++|+.+....++.+..+| ..+..++
T Consensus        30 ~~l~~L~Ls~N~i-----~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELRFVLTKL-----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP  104 (350)
T ss_dssp             TTCSEEEEESCCC-----SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred             CCCCEEEccCCcC-----CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence            4566666666666     55554 3566666777777666653 3442 45566665554333335566553 3456666


Q ss_pred             CCCeeecccccccccCchh-hcCCCCCCccce
Q 048772          186 NLRHLIIMNHVYLEYMPRG-IERLTGLRTLSE  216 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~  216 (333)
                      +|++|++++|. +..+|.. +.....+..|++
T Consensus       105 ~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l  135 (350)
T 4ay9_X          105 NLQYLLISNTG-IKHLPDVHKIHSLQKVLLDI  135 (350)
T ss_dssp             TCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEE
T ss_pred             ccccccccccc-cccCCchhhcccchhhhhhh
Confidence            66666666665 4444432 233333444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.21  E-value=1.1e-11  Score=119.66  Aligned_cols=106  Identities=12%  Similarity=0.047  Sum_probs=75.1

Q ss_pred             ccc-ccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-----cchhhhccccCcEEeccCCCCCC-----cC
Q 048772          109 FTC-LRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-----LPETCCELINLETLEINRCTRLK-----RL  177 (333)
Q Consensus       109 ~~~-L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~-----~l  177 (333)
                      ++. |++|++++|...  ....++.....+++|++|++++|.++.     ++..+.++++|++|++++ +.+.     .+
T Consensus       136 ~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~-n~~~~~~~~~l  212 (592)
T 3ogk_B          136 RADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYM-TEFAKISPKDL  212 (592)
T ss_dssp             HGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTT-CCCSSCCHHHH
T ss_pred             ccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeec-cCCCccCHHHH
Confidence            344 888888777531  112334444577888888888887542     445566788888888887 4454     34


Q ss_pred             ChhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEE
Q 048772          178 PQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFV  218 (333)
Q Consensus       178 p~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~  218 (333)
                      +..+.++++|++|++++|. +..+|..++.+++|++|++..
T Consensus       213 ~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          213 ETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             HHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECB
T ss_pred             HHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccc
Confidence            5556788999999999987 667887888889999888864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.20  E-value=2.5e-11  Score=98.18  Aligned_cols=104  Identities=23%  Similarity=0.385  Sum_probs=87.9

Q ss_pred             cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-hhcCCCCC
Q 048772          111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-MEKLMNLR  188 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~  188 (333)
                      ..++++++++.+     ..+|..+.  ++|++|++++|.++.+ |..++++++|++|++++ +.+..+|.. +.++++|+
T Consensus        10 ~~~~l~~s~n~l-----~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~   81 (170)
T 3g39_A           10 SGTTVDCSGKSL-----ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLT   81 (170)
T ss_dssp             ETTEEECTTSCC-----SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEEeCCCCc-----CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCC
Confidence            457899999988     77786653  7899999999999988 56789999999999999 778888876 58999999


Q ss_pred             eeecccccccccCchh-hcCCCCCCccceEEeCCCC
Q 048772          189 HLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTG  223 (333)
Q Consensus       189 ~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~  223 (333)
                      +|++++|. +..+|.. ++.+++|++|++.++....
T Consensus        82 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           82 QLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             EEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            99999998 7788765 8899999999998776543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.19  E-value=5e-11  Score=96.90  Aligned_cols=106  Identities=26%  Similarity=0.450  Sum_probs=83.2

Q ss_pred             ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccchh-hhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELPET-CCELINLETLEINRCTRLKRLPQG-MEKLMN  186 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~  186 (333)
                      +.|++|++++|.+     ..+|. .+..+++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+|.. +..+++
T Consensus        28 ~~l~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~  101 (177)
T 2o6r_A           28 SSATRLELESNKL-----QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQ  101 (177)
T ss_dssp             TTCSEEECCSSCC-----CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred             CCCcEEEeCCCcc-----cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-CCccccCHHHhhCCcc
Confidence            6788888888887     55554 457888899999998888888754 58888999999988 667777764 678888


Q ss_pred             CCeeecccccccccCchh-hcCCCCCCccceEEeCCC
Q 048772          187 LRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~  222 (333)
                      |++|++++|. +..+|.. +..+++|++|++.++...
T Consensus       102 L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          102 LKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence            9999998887 6777766 577888888888766544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.13  E-value=1.6e-10  Score=93.82  Aligned_cols=103  Identities=22%  Similarity=0.400  Sum_probs=83.8

Q ss_pred             cccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCChh-hhcCCCCC
Q 048772          111 CLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQG-MEKLMNLR  188 (333)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~  188 (333)
                      ..+.++++++++     ..+|..+  .++|+.|++++|.++.+|. .++++++|++|++++ +.+..+|.. ++.+++|+
T Consensus         8 ~~~~l~~~~~~l-----~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~   79 (177)
T 2o6r_A            8 SGTEIRCNSKGL-----TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLT   79 (177)
T ss_dssp             ETTEEECCSSCC-----SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEEecCCCC-----ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccC
Confidence            356788888888     6777544  3689999999999998885 468999999999999 678888765 68999999


Q ss_pred             eeecccccccccCchh-hcCCCCCCccceEEeCCC
Q 048772          189 HLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       189 ~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~  222 (333)
                      +|++++|. +..+|.. ++.+++|++|++.++...
T Consensus        80 ~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           80 ILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             EEECCCCC-ccccCHHHhhCCcccCEEECcCCcce
Confidence            99999998 6777765 688999999988766544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.08  E-value=1.6e-10  Score=93.75  Aligned_cols=90  Identities=24%  Similarity=0.456  Sum_probs=78.1

Q ss_pred             ccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchh-hhccccCcEEeccCCCCCCcCChh-hhcCCC
Q 048772          110 TCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPET-CCELINLETLEINRCTRLKRLPQG-MEKLMN  186 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~  186 (333)
                      +.|++|++++|.+     ..+ |..+..+++|++|++++|.++.+|.. ++++++|++|++++ +.+..+|.. +.++++
T Consensus        33 ~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~  106 (174)
T 2r9u_A           33 TDKQRLWLNNNQI-----TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKS  106 (174)
T ss_dssp             TTCSEEECCSSCC-----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred             CCCcEEEeCCCCc-----cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccC
Confidence            7899999999998     555 56789999999999999999999965 58999999999999 789999876 899999


Q ss_pred             CCeeecccccccccCchhhc
Q 048772          187 LRHLIIMNHVYLEYMPRGIE  206 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~  206 (333)
                      |++|++++|. +.-.|..+.
T Consensus       107 L~~L~L~~N~-~~c~~~~~~  125 (174)
T 2r9u_A          107 LTHIYLYNNP-WDCECRDIM  125 (174)
T ss_dssp             CSEEECCSSC-BCTTBGGGH
T ss_pred             CCEEEeCCCC-cccccccHH
Confidence            9999999998 565554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.08  E-value=1.9e-10  Score=104.02  Aligned_cols=104  Identities=18%  Similarity=0.230  Sum_probs=83.2

Q ss_pred             cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCee
Q 048772          113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHL  190 (333)
Q Consensus       113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L  190 (333)
                      ++++.+++++     ..+|..+  .++++.|+|++|.|+.+|. .+.++++|++|+|++|...+.+|. .|.+|++|+.+
T Consensus        12 ~~v~C~~~~L-----t~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X           12 RVFLCQESKV-----TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   84 (350)
T ss_dssp             TEEEEESTTC-----CSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred             CEEEecCCCC-----CccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence            6778888888     7788766  3679999999999999995 689999999999999444466765 47889998876


Q ss_pred             ecccccccccCch-hhcCCCCCCccceEEeCCCC
Q 048772          191 IIMNHVYLEYMPR-GIERLTGLRTLSEFVVGRTG  223 (333)
Q Consensus       191 ~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~  223 (333)
                      ...++..+..+|. .++.+++|++|++.++....
T Consensus        85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred             hcccCCcccccCchhhhhcccccccccccccccc
Confidence            5554444777764 58999999999999987654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.03  E-value=5.5e-11  Score=114.80  Aligned_cols=109  Identities=18%  Similarity=0.195  Sum_probs=65.7

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-----cchhhhccccCcEEeccCCC-CCC--cCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-----LPETCCELINLETLEINRCT-RLK--RLP  178 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~-~~~--~lp  178 (333)
                      ..+++|++|++++|..+  +...++..+..+++|++|++++|.++.     ++.....+++|++|++++|. .+.  .++
T Consensus       127 ~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          127 KSFKNFKVLVLSSCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             HHCTTCCEEEEESCEEE--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             HhCCCCcEEeCCCcCCC--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence            35777888888777321  112244445567788888888777542     23333356678888887743 111  122


Q ss_pred             hhhhcCCCCCeeecccccccccCchhhcCCCCCCccceE
Q 048772          179 QGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEF  217 (333)
Q Consensus       179 ~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~  217 (333)
                      .-+.++++|++|++++|..+..+|..+..+++|++|.+.
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence            223456788888888775455566667777777777643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.02  E-value=2.2e-10  Score=110.57  Aligned_cols=92  Identities=20%  Similarity=0.242  Sum_probs=59.4

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc--Cc--ccchhhhccccCcEEeccCCCCCCcC
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR--IK--ELPETCCELINLETLEINRCTRLKRL  177 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~--i~--~lp~~i~~L~~L~~L~l~~~~~~~~l  177 (333)
                      ++.++.++++|++|++++|.+.+.+...++.....+++|+.|++++|.  +.  .++..+.++++|++|++++|..+..+
T Consensus       148 l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l  227 (594)
T 2p1m_B          148 LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL  227 (594)
T ss_dssp             HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH
T ss_pred             HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH
Confidence            566667899999999999986322212233333467788888888876  22  23334456788888888886555555


Q ss_pred             ChhhhcCCCCCeeecc
Q 048772          178 PQGMEKLMNLRHLIIM  193 (333)
Q Consensus       178 p~~~~~L~~L~~L~l~  193 (333)
                      |..+.++++|++|+++
T Consensus       228 ~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          228 ATLLQRAPQLEELGTG  243 (594)
T ss_dssp             HHHHHHCTTCSEEECS
T ss_pred             HHHHhcCCcceEcccc
Confidence            5555566666666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.97  E-value=1.3e-09  Score=88.03  Aligned_cols=82  Identities=27%  Similarity=0.474  Sum_probs=73.3

Q ss_pred             cccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchh-hhccccCcEEeccCCCCCCcCChh-hhcCC
Q 048772          109 FTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPET-CCELINLETLEINRCTRLKRLPQG-MEKLM  185 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~  185 (333)
                      .+.|++|++++|.+     ..+ |..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.+..+|.. +.+++
T Consensus        29 ~~~l~~L~L~~N~i-----~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~  102 (170)
T 3g39_A           29 PTTTQVLYLYDNQI-----TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLK  102 (170)
T ss_dssp             CTTCSEEECCSSCC-----CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCT
T ss_pred             CCCCcEEEcCCCcC-----CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-CccCEeCHHHhcCCC
Confidence            37899999999999     555 56689999999999999999999865 58999999999999 789988875 88999


Q ss_pred             CCCeeeccccc
Q 048772          186 NLRHLIIMNHV  196 (333)
Q Consensus       186 ~L~~L~l~~~~  196 (333)
                      +|++|++++|.
T Consensus       103 ~L~~L~L~~N~  113 (170)
T 3g39_A          103 SLTHIWLLNNP  113 (170)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEeCCCC
Confidence            99999999997

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.93  E-value=1.4e-09  Score=98.07  Aligned_cols=90  Identities=16%  Similarity=0.089  Sum_probs=43.8

Q ss_pred             CCcchHhhcccccCeeeccC-CcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCeeecccccccccCchh
Q 048772          128 SKIPKAMKNLIHLRFLKLSW-LRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLEYMPRG  204 (333)
Q Consensus       128 ~~lp~~~~~l~~L~~L~l~~-~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~~~p~~  204 (333)
                      ..+|. +..+++|+.|+|++ |.++.+| ..+++|.+|++|+|++ |.+..+|. .|++|++|++|++++|. +..+|..
T Consensus        22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~   98 (347)
T 2ifg_A           22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWK   98 (347)
T ss_dssp             TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSSC-CSCCCST
T ss_pred             CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCCCc-cceeCHH
Confidence            44554 55555555555553 5555544 3455555555555555 34444432 34555555555555554 4444443


Q ss_pred             hcCCCCCCccceEEeC
Q 048772          205 IERLTGLRTLSEFVVG  220 (333)
Q Consensus       205 i~~L~~L~~L~~~~~~  220 (333)
                      +.....|+.|++.++.
T Consensus        99 ~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           99 TVQGLSLQELVLSGNP  114 (347)
T ss_dssp             TTCSCCCCEEECCSSC
T ss_pred             HcccCCceEEEeeCCC
Confidence            2222225555554443

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=98.80  E-value=5.8e-09  Score=78.10  Aligned_cols=74  Identities=22%  Similarity=0.319  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh--hhcchhHhhHHHhhhhccccccchhhHHHHHHh
Q 048772           15 SSAFEEAVERVRRVTAVKAEVDKLTSNLLAIKAVLSDAEQK--QVKEKGIRHWLDQLKEASCDMEDVFDEWITASR   88 (333)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   88 (333)
                      ++..+-+.+++..+.+++++++.++..|..|++++.|++.+  +..++.++.|+.++|+++||++|+++++.+++.
T Consensus         8 ~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~   83 (115)
T 3qfl_A            8 PKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD   83 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33344677888999999999999999999999999999988  567899999999999999999999999988764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.79  E-value=5.6e-10  Score=101.75  Aligned_cols=166  Identities=16%  Similarity=0.193  Sum_probs=96.7

Q ss_pred             cccccceEeeccccccccCCCcchHhhc-ccccCeeeccCCcCcc--cchhhhccccCcEEeccCCCCCCcCC-hhh---
Q 048772          109 FTCLRALRICGENVWEIGNSKIPKAMKN-LIHLRFLKLSWLRIKE--LPETCCELINLETLEINRCTRLKRLP-QGM---  181 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~-l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~lp-~~~---  181 (333)
                      .+.|+.|++++|.+-..+...+...+.. .++|+.|++++|.++.  +..-...+.+|++|++++ +.++... ..+   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHHHHHH
Confidence            4668888888887621111112222221 2578888888888753  222334567788888888 4554321 112   


Q ss_pred             --hcCCCCCeeeccccccccc-----CchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCC
Q 048772          182 --EKLMNLRHLIIMNHVYLEY-----MPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDL  254 (333)
Q Consensus       182 --~~L~~L~~L~l~~~~~l~~-----~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~  254 (333)
                        ...++|++|++++|. ++.     ++..+..+++|++|++.++.....+   .......+...+.|+. |++.+..-.
T Consensus       150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g---~~~L~~~L~~~~~L~~-L~Ls~N~i~  224 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG---LELLAAQLDRNRQLQE-LNVAYNGAG  224 (372)
T ss_dssp             HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH---HHHHHHHGGGCSCCCE-EECCSSCCC
T ss_pred             HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH---HHHHHHHHhcCCCcCe-EECCCCCCC
Confidence              235678888888886 433     4455677888888888766644300   0011334555667776 777764321


Q ss_pred             CCchhhhhhcCcccCCCCceEEEecc
Q 048772          255 ANVDEAKHVDLKEKKNLDRLELWFDN  280 (333)
Q Consensus       255 ~~~~~~~~~~l~~l~~L~~L~l~~~~  280 (333)
                      ......+...+...++|++|+|++|.
T Consensus       225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          225 DTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            11223455556677889999998874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.74  E-value=1.1e-08  Score=91.96  Aligned_cols=90  Identities=16%  Similarity=0.205  Sum_probs=77.0

Q ss_pred             hhhhhHhhhcccccceEeec-cccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCc
Q 048772          100 KELEDVFKQFTCLRALRICG-ENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKR  176 (333)
Q Consensus       100 ~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~  176 (333)
                      ..+|. +..+++|+.|+|++ |.+     ..+| ..++.+++|++|+|++|.++.+| ..+++|++|++|+|++ |.+..
T Consensus        22 ~~ip~-l~~~~~L~~L~l~~~n~l-----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~   94 (347)
T 2ifg_A           22 DSLHH-LPGAENLTELYIENQQHL-----QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALES   94 (347)
T ss_dssp             TTTTT-SCSCSCCSEEECCSCSSC-----CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSC
T ss_pred             CccCC-CCCCCCeeEEEccCCCCC-----CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-Cccce
Confidence            34666 88889999999996 888     6666 56899999999999999999876 4789999999999999 88999


Q ss_pred             CChhhhcCCCCCeeeccccc
Q 048772          177 LPQGMEKLMNLRHLIIMNHV  196 (333)
Q Consensus       177 lp~~~~~L~~L~~L~l~~~~  196 (333)
                      +|..+....+|+.|++.+|.
T Consensus        95 ~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           95 LSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             CCSTTTCSCCCCEEECCSSC
T ss_pred             eCHHHcccCCceEEEeeCCC
Confidence            99876555559999999887

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.72  E-value=1.9e-08  Score=89.98  Aligned_cols=64  Identities=23%  Similarity=0.257  Sum_probs=44.7

Q ss_pred             cccccceEeeccccc--cccCC-------------Ccch-Hhhc--------ccccCeeeccCCcCcccc-hhhhccccC
Q 048772          109 FTCLRALRICGENVW--EIGNS-------------KIPK-AMKN--------LIHLRFLKLSWLRIKELP-ETCCELINL  163 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~--~~~~~-------------~lp~-~~~~--------l~~L~~L~l~~~~i~~lp-~~i~~L~~L  163 (333)
                      +++|++|++++|.+.  .....             .+|+ .|..        +++|+.+++.. .++.++ ..+.++.+|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            788999999998874  11101             2332 3556        78899999988 788887 467888999


Q ss_pred             cEEeccCCCCC
Q 048772          164 ETLEINRCTRL  174 (333)
Q Consensus       164 ~~L~l~~~~~~  174 (333)
                      +.++++. +.+
T Consensus       127 ~~l~l~~-n~i  136 (329)
T 3sb4_A          127 KICQIRK-KTA  136 (329)
T ss_dssp             CEEEBCC-SSC
T ss_pred             ceEEcCC-CCc
Confidence            9999887 444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.62  E-value=1.9e-09  Score=98.19  Aligned_cols=169  Identities=17%  Similarity=0.156  Sum_probs=109.9

Q ss_pred             ccccCeeeccCCcCcccc-hhhhcc-----ccCcEEeccCCCCCCc--CChhhhcCCCCCeeecccccccccCc-h----
Q 048772          137 LIHLRFLKLSWLRIKELP-ETCCEL-----INLETLEINRCTRLKR--LPQGMEKLMNLRHLIIMNHVYLEYMP-R----  203 (333)
Q Consensus       137 l~~L~~L~l~~~~i~~lp-~~i~~L-----~~L~~L~l~~~~~~~~--lp~~~~~L~~L~~L~l~~~~~l~~~p-~----  203 (333)
                      +++|+.|++++|.++... ..+...     .+|+.|++++ +.+..  +..-...+++|++|++++|. ++... .    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~  148 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLAS-CQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRD  148 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTT-CCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecC-CCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHH
Confidence            568999999999987432 334433     6999999999 44543  11223356789999999997 44322 2    


Q ss_pred             hh-cCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCC
Q 048772          204 GI-ERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVG  282 (333)
Q Consensus       204 ~i-~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  282 (333)
                      .+ ...++|++|++.++.....+   .......+...+.|+. |++.+..-.......+...+...++|++|+|++|.+ 
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~---~~~l~~~L~~~~~L~~-L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i-  223 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAG---VAVLMEGLAGNTSVTH-LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-  223 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHH---HHHHHHHHHTCSSCCE-EECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC-
T ss_pred             HHHhcCCccceeeCCCCCCChHH---HHHHHHHHhcCCCcCE-EeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC-
Confidence            22 35688999999887654300   0112334466777887 888774321112234456777888999999998852 


Q ss_pred             CCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChh
Q 048772          283 MPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWI  322 (333)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~  322 (333)
                          +.   .-...+...+..   .++|++|+|++|.+..
T Consensus       224 ----~~---~g~~~l~~~L~~---~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          224 ----GD---TAALALARAARE---HPSLELLHLYFNELSS  253 (372)
T ss_dssp             ----CH---HHHHHHHHHHHH---CSSCCEEECTTSSCCH
T ss_pred             ----CH---HHHHHHHHHHHh---CCCCCEEeccCCCCCH
Confidence                21   112224555656   7789999999998765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.56  E-value=2.8e-08  Score=89.91  Aligned_cols=171  Identities=15%  Similarity=0.108  Sum_probs=77.5

Q ss_pred             hhcccccCeeeccCCcC----------cccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCch
Q 048772          134 MKNLIHLRFLKLSWLRI----------KELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPR  203 (333)
Q Consensus       134 ~~~l~~L~~L~l~~~~i----------~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~  203 (333)
                      +.++++|+.|.+.+...          ..++..+..+++|+.|++++|..+ .+|. + .+++|++|++..|..-.....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            44556666666644321          124445556667777777664222 3333 2 366777777765541111111


Q ss_pred             hhc--CCCCCCccceEEeCCCCCcccCcccchhh-h--cCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEe
Q 048772          204 GIE--RLTGLRTLSEFVVGRTGGEHASKVCKLEA-L--KGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWF  278 (333)
Q Consensus       204 ~i~--~L~~L~~L~~~~~~~~~~~~~~~~~~~~~-L--~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  278 (333)
                      .+.  .+++|++|+++......... .....+.. +  ..+++|+. |.+.+.+..... .........+++|++|+|++
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~-~~~~~l~~~l~~~~~p~Lr~-L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFD-GDMNVFRPLFSKDRFPNLKW-LGIVDAEEQNVV-VEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCC-SCGGGTGGGSCTTTCTTCCE-EEEESCTTHHHH-HHHHHHCSSGGGCSEEECCS
T ss_pred             HHHHccCCCCcEEEEeccccccccc-hhHHHHHHHHhcCCCCCcCE-EeCCCCCCchHH-HHHHHhCccCCCCCEEECCC
Confidence            222  56777777664321100000 00000111 1  23455665 666543221100 11111123467777777765


Q ss_pred             ccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecCh
Q 048772          279 DNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIW  321 (333)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~  321 (333)
                      |..     +   ..-...++..+.+   +++|+.|++++|.+.
T Consensus       289 n~L-----~---d~G~~~L~~~L~~---l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          289 GVL-----T---DEGARLLLDHVDK---IKHLKFINMKYNYLS  320 (362)
T ss_dssp             SCC-----B---HHHHHHHHTTHHH---HTTCSEEECCSBBCC
T ss_pred             CCC-----C---hHHHHHHHhhccc---CCcceEEECCCCcCC
Confidence            531     1   1111113444455   667777777766553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.51  E-value=8.3e-08  Score=86.84  Aligned_cols=167  Identities=16%  Similarity=0.125  Sum_probs=103.5

Q ss_pred             HhhhcccccceEeecccccc-----ccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCc-CC
Q 048772          105 VFKQFTCLRALRICGENVWE-----IGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKR-LP  178 (333)
Q Consensus       105 ~~~~~~~L~~L~l~~~~~~~-----~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~-lp  178 (333)
                      ....+++|+.|.+.+.....     .+...++..+..+++|+.|+++++.-..+|. + .+.+|+.|++..|. +.. ..
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~~~l  210 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG-LPDSVV  210 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB-CCHHHH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC-CChHHH
Confidence            34678899999987643210     1112466667888999999999874234554 3 48899999998743 332 11


Q ss_pred             hhhh--cCCCCCeeeccccc-------ccccCchhh--cCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeE
Q 048772          179 QGME--KLMNLRHLIIMNHV-------YLEYMPRGI--ERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLK  247 (333)
Q Consensus       179 ~~~~--~L~~L~~L~l~~~~-------~l~~~p~~i--~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~  247 (333)
                      ..+.  .+++|++|+++.+.       .+..+...+  +.+++|++|.+..+....    .....+.+.+.+++|+. |+
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~----~~~~~la~a~~~~~L~~-Ld  285 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN----VVVEMFLESDILPQLET-MD  285 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH----HHHHHHHHCSSGGGCSE-EE
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch----HHHHHHHhCccCCCCCE-EE
Confidence            2333  78999999986321       011222222  357899999998766542    01123333346778887 88


Q ss_pred             EcccCCCCC-chhhhhhcCcccCCCCceEEEecc
Q 048772          248 IRMLGDLAN-VDEAKHVDLKEKKNLDRLELWFDN  280 (333)
Q Consensus       248 ~~~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~  280 (333)
                      ++... +.+ ...++...+..+++|+.|+++.|.
T Consensus       286 Ls~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          286 ISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             CCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence            86522 211 122445556778999999998774

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=3.5e-07  Score=81.67  Aligned_cols=177  Identities=12%  Similarity=0.059  Sum_probs=114.1

Q ss_pred             hhHhhh--------cccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccC--
Q 048772          103 EDVFKQ--------FTCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINR--  170 (333)
Q Consensus       103 ~~~~~~--------~~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~--  170 (333)
                      +..|..        +++|+.+++.. .+     ..+++ .|..+++|+.++++.|.+..++ ..+..+.++.++....  
T Consensus        86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i-----~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~  159 (329)
T 3sb4_A           86 AYAFSNVVNGVTKGKQTLEKVILSE-KI-----KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD  159 (329)
T ss_dssp             TTTTEEEETTEEEECTTCCC-CBCT-TC-----CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTH
T ss_pred             HHHhcccccccccccCCCcEEECCc-cc-----cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchh
Confidence            456677        89999999998 66     55554 4788999999999999877666 4455555566555433  


Q ss_pred             ---------------CCCCC---------cCChhh----------------------------hcCCCCCeeeccccccc
Q 048772          171 ---------------CTRLK---------RLPQGM----------------------------EKLMNLRHLIIMNHVYL  198 (333)
Q Consensus       171 ---------------~~~~~---------~lp~~~----------------------------~~L~~L~~L~l~~~~~l  198 (333)
                                     |..+.         .+|..+                            ..+++|+.+++++|. +
T Consensus       160 ~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i  238 (329)
T 3sb4_A          160 AYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-A  238 (329)
T ss_dssp             HHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-C
T ss_pred             hhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-c
Confidence                           11111         111110                            137899999999887 7


Q ss_pred             ccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCccccc-ceeEEcccCCCCCchhhhhhcCcccCCCCceEE
Q 048772          199 EYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLR-GLLKIRMLGDLANVDEAKHVDLKEKKNLDRLEL  276 (333)
Q Consensus       199 ~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~-~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  276 (333)
                      ..+|.. +..+++|+++.+..+ ..       .-....+..+..|+ . +.+..  ++   .......+.++++|+.|++
T Consensus       239 ~~I~~~aF~~~~~L~~l~l~~n-i~-------~I~~~aF~~~~~L~~~-l~l~~--~l---~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          239 TTIPDFTFAQKKYLLKIKLPHN-LK-------TIGQRVFSNCGRLAGT-LELPA--SV---TAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             CEECTTTTTTCTTCCEEECCTT-CC-------EECTTTTTTCTTCCEE-EEECT--TC---CEECTTTTTTCTTEEEEEE
T ss_pred             ceecHhhhhCCCCCCEEECCcc-cc-------eehHHHhhCChhccEE-EEEcc--cc---eEEchhhhhCCccCCEEEe
Confidence            888865 889999999987553 11       11223345556666 5 66654  22   2233467889999999999


Q ss_pred             EeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEE
Q 048772          277 WFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKY  315 (333)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l  315 (333)
                      +.++     ...++.       ..+..   +++|+.++.
T Consensus       305 ~~n~-----i~~I~~-------~aF~~---~~~L~~ly~  328 (329)
T 3sb4_A          305 TGDK-----ITTLGD-------ELFGN---GVPSKLIYK  328 (329)
T ss_dssp             CSSC-----CCEECT-------TTTCT---TCCCCEEEC
T ss_pred             CCCc-----cCccch-------hhhcC---Ccchhhhcc
Confidence            7663     222222       25566   888998874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.35  E-value=2.1e-07  Score=76.02  Aligned_cols=118  Identities=15%  Similarity=0.108  Sum_probs=82.9

Q ss_pred             hhhhHhhhcccccceEeecc-ccccccCCCcchHhhcccccCeeeccCCcCc-----ccchhhhccccCcEEeccCCCCC
Q 048772          101 ELEDVFKQFTCLRALRICGE-NVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCTRL  174 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~  174 (333)
                      .+...+...+.|++|++++| .+-+.+...+...+...++|++|+|++|.+.     .+...+...++|++|+|++ +.+
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i  105 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES-NFI  105 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS-SCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC-CcC
Confidence            45566677899999999998 7632222334555677789999999999876     3455666778899999998 556


Q ss_pred             Cc-----CChhhhcCCCCCeeec--cccccccc-----CchhhcCCCCCCccceEEeC
Q 048772          175 KR-----LPQGMEKLMNLRHLII--MNHVYLEY-----MPRGIERLTGLRTLSEFVVG  220 (333)
Q Consensus       175 ~~-----lp~~~~~L~~L~~L~l--~~~~~l~~-----~p~~i~~L~~L~~L~~~~~~  220 (333)
                      +.     +...+...++|++|++  ++|. ++.     +...+...++|++|++..+.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            54     4556777788999999  6666 332     33445566778887776554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=8.5e-07  Score=76.46  Aligned_cols=81  Identities=23%  Similarity=0.254  Sum_probs=57.6

Q ss_pred             hcccccCeeeccCCcCccc---chhhhccccCcEEeccCCCCCCcCChhhhcCC--CCCeeecccccccccCch------
Q 048772          135 KNLIHLRFLKLSWLRIKEL---PETCCELINLETLEINRCTRLKRLPQGMEKLM--NLRHLIIMNHVYLEYMPR------  203 (333)
Q Consensus       135 ~~l~~L~~L~l~~~~i~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~--~L~~L~l~~~~~l~~~p~------  203 (333)
                      .++++|+.|+|++|.++.+   |..++.+++|++|+|++ |.+..+ ..+..+.  +|+.|++++|+....+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            4577888888888887654   46677888888888888 667766 3355555  888888888884444542      


Q ss_pred             -hhcCCCCCCccceE
Q 048772          204 -GIERLTGLRTLSEF  217 (333)
Q Consensus       204 -~i~~L~~L~~L~~~  217 (333)
                       .+..+++|+.|+..
T Consensus       245 ~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          245 AIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHCTTCCEESSC
T ss_pred             HHHHHCcccCeECCc
Confidence             25677777777754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.17  E-value=4.5e-06  Score=76.58  Aligned_cols=104  Identities=14%  Similarity=0.224  Sum_probs=49.7

Q ss_pred             hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChh-h
Q 048772          104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQG-M  181 (333)
Q Consensus       104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-~  181 (333)
                      ..|..|++|+.+++..+.+     ..+|........|+.+.+..+ ++.++ ..+.++.+|+.+++.. + +..++.. |
T Consensus       174 ~aF~~c~~L~~l~l~~n~l-----~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~-l~~I~~~aF  245 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKI-----TKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-N-VSTIGQEAF  245 (401)
T ss_dssp             STTTTCTTCCEEECTTSCC-----SEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-T-CCEECTTTT
T ss_pred             HHhhCcccCCeeecCCCcc-----eEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-C-ccCcccccc
Confidence            3455566666666665555     344433323455555555432 44444 3445555666666554 1 3333322 2


Q ss_pred             hcCCCCCeeecccccccccCch-hhcCCCCCCccceEE
Q 048772          182 EKLMNLRHLIIMNHVYLEYMPR-GIERLTGLRTLSEFV  218 (333)
Q Consensus       182 ~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~  218 (333)
                      .+ .+|+.+.+.++  +..++. .+..+++|+.+.+..
T Consensus       246 ~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          246 RE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             TT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEES
T ss_pred             cc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCC
Confidence            22 44455544322  334432 255556666555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.01  E-value=1.2e-05  Score=69.33  Aligned_cols=83  Identities=17%  Similarity=0.201  Sum_probs=64.7

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccc--cCcEEeccCCCCCC-cCCh----
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELI--NLETLEINRCTRLK-RLPQ----  179 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~--~L~~L~l~~~~~~~-~lp~----  179 (333)
                      .+++.|++|++++|.+..+  ..+|..+..+++|++|+|++|.++.+. .+..+.  +|++|+|++ |.+. .+|.    
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l--~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~-Npl~~~~~~~~~y  242 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDG-NSLCDTFRDQSTY  242 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCC--GGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTT-STTGGGCSSHHHH
T ss_pred             hhCCCCCEEECCCCCCCCC--ccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccC-CcCccccCcchhH
Confidence            6789999999999998322  245567789999999999999998773 456666  999999999 5454 4552    


Q ss_pred             ---hhhcCCCCCeeecc
Q 048772          180 ---GMEKLMNLRHLIIM  193 (333)
Q Consensus       180 ---~~~~L~~L~~L~l~  193 (333)
                         .+..+++|+.||-.
T Consensus       243 ~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          243 ISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHHHCTTCCEESSC
T ss_pred             HHHHHHHCcccCeECCc
Confidence               36789999999753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.97  E-value=3.3e-06  Score=67.81  Aligned_cols=85  Identities=9%  Similarity=0.089  Sum_probs=52.4

Q ss_pred             cccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCC-hhhhcC----CCCCeeecccccccccCc-hhhcCCCC
Q 048772          138 IHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLP-QGMEKL----MNLRHLIIMNHVYLEYMP-RGIERLTG  210 (333)
Q Consensus       138 ~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp-~~~~~L----~~L~~L~l~~~~~l~~~p-~~i~~L~~  210 (333)
                      ..|+.||+++|.++.. -..+..+++|+.|+|++|..++.-- ..+..+    ++|++|++++|..++.-- ..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            4688888888876632 2456778888888888877665411 123333    357777777776444321 22556666


Q ss_pred             CCccceEEeCCC
Q 048772          211 LRTLSEFVVGRT  222 (333)
Q Consensus       211 L~~L~~~~~~~~  222 (333)
                      |++|++.++...
T Consensus       141 L~~L~L~~c~~I  152 (176)
T 3e4g_A          141 LKYLFLSDLPGV  152 (176)
T ss_dssp             CCEEEEESCTTC
T ss_pred             CCEEECCCCCCC
Confidence            777766666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.85  E-value=9.4e-06  Score=66.06  Aligned_cols=94  Identities=18%  Similarity=0.104  Sum_probs=71.9

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-----cchhhhccccCcEEec--cCCCCC
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-----LPETCCELINLETLEI--NRCTRL  174 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l--~~~~~~  174 (333)
                      +...+...++|++|++++|.+-+.+...+...+...+.|++|++++|.|..     +...+...++|++|++  ++ +.+
T Consensus        57 l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i  135 (185)
T 1io0_A           57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQS-QPL  135 (185)
T ss_dssp             HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCC
T ss_pred             HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCC-CCC
Confidence            445566778999999999998332223355566777899999999999873     5677788889999999  66 556


Q ss_pred             Cc-----CChhhhcCCCCCeeeccccc
Q 048772          175 KR-----LPQGMEKLMNLRHLIIMNHV  196 (333)
Q Consensus       175 ~~-----lp~~~~~L~~L~~L~l~~~~  196 (333)
                      +.     +...+...++|++|++++|.
T Consensus       136 ~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          136 GNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            53     44556777999999999986

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.77  E-value=0.00013  Score=66.83  Aligned_cols=74  Identities=12%  Similarity=0.250  Sum_probs=34.6

Q ss_pred             ccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchh-hcCCCCCCccce
Q 048772          139 HLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSE  216 (333)
Q Consensus       139 ~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~  216 (333)
                      .|+.+.+.. .++.++ ..+.++.+|+.++++. +.+..+|.......+|+.+.+.++  +..++.. +..+++|+.+.+
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence            455555543 344444 3445555555555554 445555444333445555555432  3334322 444445544443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.69  E-value=4.1e-05  Score=61.37  Aligned_cols=36  Identities=11%  Similarity=0.263  Sum_probs=21.3

Q ss_pred             ccCcEEeccCCCCCCcC-ChhhhcCCCCCeeecccccc
Q 048772          161 INLETLEINRCTRLKRL-PQGMEKLMNLRHLIIMNHVY  197 (333)
Q Consensus       161 ~~L~~L~l~~~~~~~~l-p~~~~~L~~L~~L~l~~~~~  197 (333)
                      .+|+.||+++|. ++.. -..+.++++|++|++++|..
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~   97 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHY   97 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTT
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCc
Confidence            468888888855 4421 12345566666666666653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.76  E-value=0.013  Score=44.22  Aligned_cols=31  Identities=23%  Similarity=0.147  Sum_probs=14.8

Q ss_pred             cCeeeccCCcCcccch-hhhccccCcEEeccC
Q 048772          140 LRFLKLSWLRIKELPE-TCCELINLETLEINR  170 (333)
Q Consensus       140 L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~  170 (333)
                      |++|+|++|.|+.+|. .+..+.+|++|+|.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   64 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGA   64 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence            4455555555554442 234444455555444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.57  E-value=0.013  Score=44.23  Aligned_cols=53  Identities=19%  Similarity=0.315  Sum_probs=42.3

Q ss_pred             CeeeccCCcCc--ccchhhhccccCcEEeccCCCCCCcCChh-hhcCCCCCeeeccccc
Q 048772          141 RFLKLSWLRIK--ELPETCCELINLETLEINRCTRLKRLPQG-MEKLMNLRHLIIMNHV  196 (333)
Q Consensus       141 ~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~~L~~L~l~~~~  196 (333)
                      ..++.+++.++  .+|..+.  .+|++|+|++ |.++.+|.. |..+++|+.|++.+|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            46777787777  8885432  4689999999 889999875 6789999999999886

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.20  E-value=0.015  Score=47.26  Aligned_cols=93  Identities=17%  Similarity=0.084  Sum_probs=56.3

Q ss_pred             hhhHhhhcccccceEeecc-ccccccCCCcchHhhcccccCeeeccCCcCc-----ccchhhhccccCcEEeccCCCCCC
Q 048772          102 LEDVFKQFTCLRALRICGE-NVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCTRLK  175 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~-~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~  175 (333)
                      +..++.+-+.|+.|+++++ .+-+.+...+-..+..-+.|+.|+|++|.+.     .+.+.+..=+.|++|+|+. +.++
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig  111 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLT  111 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCC
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCC
Confidence            3444555678888998875 5522111234445666678888888888865     3444555556788888887 5554


Q ss_pred             c-----CChhhhcCCCCCeeecccc
Q 048772          176 R-----LPQGMEKLMNLRHLIIMNH  195 (333)
Q Consensus       176 ~-----lp~~~~~L~~L~~L~l~~~  195 (333)
                      .     +-+.+..=+.|++|++++|
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCC
Confidence            2     2222333345677776654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.55  E-value=0.075  Score=48.03  Aligned_cols=126  Identities=13%  Similarity=0.115  Sum_probs=71.2

Q ss_pred             HhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCeeecccccccccCchh-hcCCC
Q 048772          133 AMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLEYMPRG-IERLT  209 (333)
Q Consensus       133 ~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~  209 (333)
                      .+..+..|+.+.+..+. ..+. ..+.++..|+.+.+..  .+..++. .|.++.+|+.+.+..+  +..++.. +..++
T Consensus       260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~  334 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred             eeeecccccEEeccccc-ceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence            45667778877776543 3343 4566778888888864  4666664 3677888888888654  5566543 77888


Q ss_pred             CCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEec
Q 048772          210 GLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFD  279 (333)
Q Consensus       210 ~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  279 (333)
                      +|+.+.+-. ....       -.-..+.++++|+. +.+.+.       ......+.....|+.+.+..+
T Consensus       335 ~L~~i~ip~-sv~~-------I~~~aF~~C~~L~~-i~~~~~-------~~~~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          335 QLERIAIPS-SVTK-------IPESAFSNCTALNN-IEYSGS-------RSQWNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TCCEEEECT-TCCB-------CCGGGGTTCTTCCE-EEESSC-------HHHHHTCBCCCCC--------
T ss_pred             CCCEEEECc-ccCE-------EhHhHhhCCCCCCE-EEECCc-------eeehhhhhccCCCCEEEeCCC
Confidence            888877631 1111       11233455566665 666541       112245666777887777533

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.10  E-value=0.087  Score=47.19  Aligned_cols=102  Identities=16%  Similarity=0.159  Sum_probs=57.9

Q ss_pred             HhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hh
Q 048772          105 VFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GM  181 (333)
Q Consensus       105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~  181 (333)
                      .+..+..|+.+.+..+ +     ..++ ..+..+..|+.+.+..+ ++.+. ..+.++.+|+.+.+..  .+..++. .+
T Consensus       212 ~f~~~~~l~~i~~~~~-~-----~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF  282 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-V-----TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLC  282 (379)
T ss_dssp             TTTTCSSCSEEECCTT-C-----CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTT
T ss_pred             ccccccccceeeeccc-e-----eEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceecccccc
Confidence            3445566666665433 2     2222 23455666777776544 45554 3455666777777654  2555543 35


Q ss_pred             hcCCCCCeeecccccccccCchh-hcCCCCCCccce
Q 048772          182 EKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSE  216 (333)
Q Consensus       182 ~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~  216 (333)
                      .++.+|+.+.+.++. +..++.. +.++.+|+.+.+
T Consensus       283 ~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          283 SGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             TTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccc-cceehhhhhcCCCCCCEEEc
Confidence            666777777776554 4555533 666777776665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.07  E-value=0.058  Score=43.80  Aligned_cols=95  Identities=9%  Similarity=0.046  Sum_probs=65.3

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-----ccchhhhccccCcEEeccCCC--CC
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCT--RL  174 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~--~~  174 (333)
                      +-..+..-+.|+.|+|++|.+-+.+...+...+..-+.|+.|+|++|.|.     .+-+.+..=+.|+.|+|++|.  .+
T Consensus        62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i  141 (197)
T 1pgv_A           62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL  141 (197)
T ss_dssp             HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence            44455566889999999999855444566667777889999999999986     234445445679999998632  23


Q ss_pred             C-----cCChhhhcCCCCCeeeccccc
Q 048772          175 K-----RLPQGMEKLMNLRHLIIMNHV  196 (333)
Q Consensus       175 ~-----~lp~~~~~L~~L~~L~l~~~~  196 (333)
                      .     .+-..+..=++|+.|+++.+.
T Consensus       142 g~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          142 GNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             CHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            3     122334455678888776553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.91  E-value=0.073  Score=48.08  Aligned_cols=144  Identities=15%  Similarity=0.149  Sum_probs=83.1

Q ss_pred             hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hh
Q 048772          104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GM  181 (333)
Q Consensus       104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~  181 (333)
                      ..+..+..++.+.+..+..     .--...+..+..++......+.   +| ..+..+.+|+.+.+.. + ++.++. .|
T Consensus       247 ~~f~~~~~l~~~~~~~~~~-----~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~-~-i~~I~~~aF  316 (394)
T 4fs7_A          247 SVFYGCTDLESISIQNNKL-----RIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLD-S-VKFIGEEAF  316 (394)
T ss_dssp             STTTTCSSCCEEEECCTTC-----EECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECT-T-CCEECTTTT
T ss_pred             ccccccccceeEEcCCCcc-----eeeccccccccccceeccCcee---ecccccccccccccccccc-c-cceechhhh
Confidence            3566778888888876543     1112345667777777665543   33 3456777888888865 2 566654 46


Q ss_pred             hcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhh
Q 048772          182 EKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEA  260 (333)
Q Consensus       182 ~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~  260 (333)
                      .++.+|+.+++.++  +..++.. +.++++|+.+.+... ...       -.-..+..+.+|+. +.+..      ....
T Consensus       317 ~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~-------I~~~aF~~C~~L~~-i~lp~------~~~~  379 (394)
T 4fs7_A          317 ESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRK-------IGANAFQGCINLKK-VELPK------RLEQ  379 (394)
T ss_dssp             TTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCE-------ECTTTBTTCTTCCE-EEEEG------GGGG
T ss_pred             cCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccE-------ehHHHhhCCCCCCE-EEECC------CCEE
Confidence            77888888888654  5666543 778888887776321 111       11123444455554 55543      1122


Q ss_pred             hhhcCcccCCCCce
Q 048772          261 KHVDLKEKKNLDRL  274 (333)
Q Consensus       261 ~~~~l~~l~~L~~L  274 (333)
                      ....+.++++|+.+
T Consensus       380 ~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          380 YRYDFEDTTKFKWI  393 (394)
T ss_dssp             GGGGBCTTCEEEEE
T ss_pred             hhheecCCCCCcEE
Confidence            23456677766643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.61  E-value=0.064  Score=48.47  Aligned_cols=102  Identities=13%  Similarity=0.106  Sum_probs=73.7

Q ss_pred             hHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hh
Q 048772          104 DVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GM  181 (333)
Q Consensus       104 ~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~  181 (333)
                      ..|..+..++.+......+     ..  ..+..+..|+.+.+..+ ++.++ ..+.++.+|+.+++..  .+..++. .|
T Consensus       270 ~~F~~~~~l~~~~~~~~~i-----~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF  339 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVIV-----PE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSF  339 (394)
T ss_dssp             CTTTTCTTCCEEEECSSEE-----CT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTT
T ss_pred             cccccccccceeccCceee-----cc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhc
Confidence            3456677777776655433     11  34667888999988754 67776 4678899999999975  3677754 57


Q ss_pred             hcCCCCCeeecccccccccCchh-hcCCCCCCccceE
Q 048772          182 EKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEF  217 (333)
Q Consensus       182 ~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~  217 (333)
                      .++.+|+.+.+..+  +..++.. +..+++|+.+.+.
T Consensus       340 ~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          340 RGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred             cCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence            88999999999765  5666644 8899999988874

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.72  E-value=0.5  Score=42.51  Aligned_cols=128  Identities=9%  Similarity=0.082  Sum_probs=76.3

Q ss_pred             hhhhccccCcEEeccCCCCCCcCC-hhhhcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccc
Q 048772          155 ETCCELINLETLEINRCTRLKRLP-QGMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCK  232 (333)
Q Consensus       155 ~~i~~L~~L~~L~l~~~~~~~~lp-~~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~  232 (333)
                      ..+.++.+|+.+.+.. + +..++ ..+.++.+|+.+.+...  +..++.. +..+.+|+.+.+... ...       -.
T Consensus       259 ~aF~~c~~L~~i~lp~-~-~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~-------I~  326 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPD-S-VVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQ-------IL  326 (394)
T ss_dssp             TTTTTCSSCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCE-------EC
T ss_pred             ceeeecccccEEeccc-c-cceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccE-------eh
Confidence            3567788899999875 3 33443 34778899999999653  6777755 888999998876321 110       11


Q ss_pred             hhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCcee
Q 048772          233 LEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHP  312 (333)
Q Consensus       233 ~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~  312 (333)
                      -..+..+++|+. +.+..  ++.   ......+.++++|+.+.+..+           ..    .......   +.+|+.
T Consensus       327 ~~aF~~C~~L~~-i~ip~--sv~---~I~~~aF~~C~~L~~i~~~~~-----------~~----~~~~~~~---~~~L~~  382 (394)
T 4gt6_A          327 DDAFAGCEQLER-IAIPS--SVT---KIPESAFSNCTALNNIEYSGS-----------RS----QWNAIST---DSGLQN  382 (394)
T ss_dssp             TTTTTTCTTCCE-EEECT--TCC---BCCGGGGTTCTTCCEEEESSC-----------HH----HHHTCBC---CCCC--
T ss_pred             HhHhhCCCCCCE-EEECc--ccC---EEhHhHhhCCCCCCEEEECCc-----------ee----ehhhhhc---cCCCCE
Confidence            123445555665 66642  222   223457889999999999755           22    2345555   788999


Q ss_pred             eEEeee
Q 048772          313 LKYSRY  318 (333)
Q Consensus       313 L~l~~~  318 (333)
                      +.+..+
T Consensus       383 i~i~~~  388 (394)
T 4gt6_A          383 LPVAPG  388 (394)
T ss_dssp             ------
T ss_pred             EEeCCC
Confidence            988654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.28  E-value=0.38  Score=42.89  Aligned_cols=104  Identities=18%  Similarity=0.256  Sum_probs=77.7

Q ss_pred             hhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-  179 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-  179 (333)
                      ...|..+..|+.+.+..+ +     ..++ ..+..+..|+.+.+..+ +..++ ..+.++.+|+.+.+.. +.++.++. 
T Consensus       233 ~~~f~~~~~L~~i~lp~~-v-----~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~  304 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKN-V-----TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPR  304 (379)
T ss_dssp             TTTTTTCSSCCEEEECTT-C-----CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECC-TTCCEECTT
T ss_pred             cccccCCccceEEEcCCC-c-----cEeCccccceeehhcccccccc-ceeccccccccccccccccccc-cccceehhh
Confidence            345677888988888654 3     3333 34677888999988654 66676 4678899999999987 66777764 


Q ss_pred             hhhcCCCCCeeecccccccccCchh-hcCCCCCCccce
Q 048772          180 GMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSE  216 (333)
Q Consensus       180 ~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~  216 (333)
                      .|.++.+|+.+.+..+  +..++.. +.++++|+.+.+
T Consensus       305 aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          305 VFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred             hhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence            4788999999999754  5667644 888999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	333
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.65
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.65
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.5
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.48
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.47
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.46
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.44
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.41
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.34
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.31
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.29
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.26
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.17
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.13
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.03
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.95
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.93
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.8
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.67
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.54
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.72
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.66
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.27

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.65  E-value=7.9e-17  Score=141.67  Aligned_cols=216  Identities=16%  Similarity=0.162  Sum_probs=148.1

Q ss_pred             HhhhhHhcCCccc-hhhhhHhhhcccccceEeec-cccccccCCCcchHhhcccccCeeeccCCcCccc-chhhhccccC
Q 048772           87 SRRLQIKGIPQEK-KELEDVFKQFTCLRALRICG-ENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKEL-PETCCELINL  163 (333)
Q Consensus        87 ~~~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L  163 (333)
                      +..+.+.+..... ..+|..+.++++|++|++++ |.+.    ..+|+.++++++|++|++++|.+..+ |..+..+.+|
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~----g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccc----cccccccccccccchhhhccccccccccccccchhhh
Confidence            3444554443322 24677889999999999997 5552    57899999999999999999998865 4668899999


Q ss_pred             cEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCC-CccceEEeCCCCCcc----------------
Q 048772          164 ETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGL-RTLSEFVVGRTGGEH----------------  226 (333)
Q Consensus       164 ~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L-~~L~~~~~~~~~~~~----------------  226 (333)
                      ++++++.|.....+|.+++++++|+++++++|.....+|..++.+..+ +.+....+......+                
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~  207 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN  207 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred             cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999977777899999999999999999998666889888888776 555543322111000                


Q ss_pred             cCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCC
Q 048772          227 ASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLL  306 (333)
Q Consensus       227 ~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  306 (333)
                      ...+........++.++. +.+....     ....+..+..+++|+.|+++.|...+.            +|+.+..   
T Consensus       208 ~~~~~~~~~~~~~~~l~~-l~~~~~~-----l~~~~~~~~~~~~L~~L~Ls~N~l~g~------------iP~~l~~---  266 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQK-IHLAKNS-----LAFDLGKVGLSKNLNGLDLRNNRIYGT------------LPQGLTQ---  266 (313)
T ss_dssp             EEEECCGGGCCTTSCCSE-EECCSSE-----ECCBGGGCCCCTTCCEEECCSSCCEEC------------CCGGGGG---
T ss_pred             cccccccccccccccccc-ccccccc-----ccccccccccccccccccCccCeeccc------------CChHHhC---
Confidence            000111222333444443 4433311     112244577778888888887754332            6667777   


Q ss_pred             CCCceeeEEeeecChhhhhhh
Q 048772          307 WDNCHPLKYSRYGIWIVWKEW  327 (333)
Q Consensus       307 ~~~L~~L~l~~~~~~~~~p~w  327 (333)
                      +++|++|+|++|.+.+.+|++
T Consensus       267 L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         267 LKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCCS
T ss_pred             CCCCCEEECcCCcccccCCCc
Confidence            888999999988877447764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.8e-16  Score=136.17  Aligned_cols=183  Identities=19%  Similarity=0.110  Sum_probs=139.9

Q ss_pred             ccccceEeeccccccccCCCcc-hHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCC
Q 048772          110 TCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLR  188 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~  188 (333)
                      +.+++|++++|.+     ..+| ..+.++++|++|++++|.++.+|. ++.+++|++|++++ +.+...|..+.++++|+
T Consensus        31 ~~l~~L~Ls~N~i-----~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~  103 (266)
T d1p9ag_          31 KDTTILHLSENLL-----YTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSH-NQLQSLPLLGQTLPALT  103 (266)
T ss_dssp             TTCCEEECTTSCC-----SEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCS-SCCSSCCCCTTTCTTCC
T ss_pred             cCCCEEECcCCcC-----CCcCHHHhhcccccccccccccccccccc-cccccccccccccc-ccccccccccccccccc
Confidence            5799999999998     6776 458899999999999999998885 57899999999999 77888898999999999


Q ss_pred             eeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcc
Q 048772          189 HLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKE  267 (333)
Q Consensus       189 ~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~  267 (333)
                      .|++++|. ...++ ..+..+.++++|++..+....       .....+..++.|+. +++.+.    ......+..+..
T Consensus       104 ~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l~~-------l~~~~~~~l~~l~~-l~l~~N----~l~~~~~~~~~~  170 (266)
T d1p9ag_         104 VLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT-------LPPGLLTPTPKLEK-LSLANN----NLTELPAGLLNG  170 (266)
T ss_dssp             EEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC-------CCTTTTTTCTTCCE-EECTTS----CCSCCCTTTTTT
T ss_pred             cccccccc-cceeeccccccccccccccccccccce-------eccccccccccchh-cccccc----cccccCcccccc
Confidence            99999998 55555 447888999999887665543       12233445666665 666652    223334456788


Q ss_pred             cCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC------hhhhhhhHh
Q 048772          268 KKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI------WIVWKEWVM  329 (333)
Q Consensus       268 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~------~~~~p~w~~  329 (333)
                      +++|++|+|+.|...     .        +++.+..   +++|+.|+|+||..      .. ++.|+.
T Consensus       171 l~~L~~L~Ls~N~L~-----~--------lp~~~~~---~~~L~~L~L~~Np~~CdC~~~~-l~~wl~  221 (266)
T d1p9ag_         171 LENLDTLLLQENSLY-----T--------IPKGFFG---SHLLPFAFLHGNPWLCNCEILY-FRRWLQ  221 (266)
T ss_dssp             CTTCCEEECCSSCCC-----C--------CCTTTTT---TCCCSEEECCSCCBCCSGGGHH-HHHHHH
T ss_pred             ccccceeecccCCCc-----c--------cChhHCC---CCCCCEEEecCCCCCCCcchHH-HHHHHH
Confidence            999999999988532     1        4555666   78999999998754      23 567764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.6e-16  Score=136.51  Aligned_cols=184  Identities=18%  Similarity=0.170  Sum_probs=137.8

Q ss_pred             cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772          109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQGMEKLMNL  187 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L  187 (333)
                      ...+...+.+++++     ..+|+.+.  +.+++|+|++|.++.+| ..+.++++|++|++++ +.++.+|. ++.+++|
T Consensus         9 ~~~~~~v~C~~~~L-----~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~-N~l~~l~~-~~~l~~L   79 (266)
T d1p9ag_           9 VASHLEVNCDKRNL-----TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQV-DGTLPVL   79 (266)
T ss_dssp             STTCCEEECTTSCC-----SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEEC-CSCCTTC
T ss_pred             cCCCeEEEccCCCC-----CeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccc-cccccccc-ccccccc
Confidence            34455668888887     67786654  57999999999999998 5789999999999999 67888874 6789999


Q ss_pred             CeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcc
Q 048772          188 RHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKE  267 (333)
Q Consensus       188 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~  267 (333)
                      ++|++++|. +...|..+..+++|+.|++..+....       ........+..+.. +.+....    .....+..+..
T Consensus        80 ~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~l~~l~~-L~l~~n~----l~~l~~~~~~~  146 (266)
T d1p9ag_          80 GTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTS-------LPLGALRGLGELQE-LYLKGNE----LKTLPPGLLTP  146 (266)
T ss_dssp             CEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCC-------CCSSTTTTCTTCCE-EECTTSC----CCCCCTTTTTT
T ss_pred             ccccccccc-ccccccccccccccccccccccccce-------eecccccccccccc-ccccccc----cceeccccccc
Confidence            999999998 78888889999999999988766543       22233345555555 6555421    22223455677


Q ss_pred             cCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhh
Q 048772          268 KKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN  330 (333)
Q Consensus       268 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~  330 (333)
                      +++|+.|+++.|+....            ..+.+..   +++|++|+|++|.+.. +|+.+..
T Consensus       147 l~~l~~l~l~~N~l~~~------------~~~~~~~---l~~L~~L~Ls~N~L~~-lp~~~~~  193 (266)
T d1p9ag_         147 TPKLEKLSLANNNLTEL------------PAGLLNG---LENLDTLLLQENSLYT-IPKGFFG  193 (266)
T ss_dssp             CTTCCEEECTTSCCSCC------------CTTTTTT---CTTCCEEECCSSCCCC-CCTTTTT
T ss_pred             cccchhccccccccccc------------Ccccccc---ccccceeecccCCCcc-cChhHCC
Confidence            89999999998854322            2234555   7899999999999987 8876643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=5.4e-15  Score=122.26  Aligned_cols=166  Identities=16%  Similarity=0.221  Sum_probs=126.4

Q ss_pred             hcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCC
Q 048772          108 QFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNL  187 (333)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L  187 (333)
                      .+..|+.|++++|.+     ..++ .+..+++|+.|++++|.++.++. ++++++|++|++++ +.++.+| .+..+++|
T Consensus        44 ~L~~L~~L~l~~~~i-----~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~-n~i~~l~-~l~~l~~L  114 (210)
T d1h6ta2          44 ELNSIDQIIANNSDI-----KSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE-NKVKDLS-SLKDLKKL  114 (210)
T ss_dssp             HHHTCCEEECTTSCC-----CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCGG-GGTTCTTC
T ss_pred             HhcCccEEECcCCCC-----CCch-hHhhCCCCCEEeCCCccccCccc-cccCcccccccccc-ccccccc-cccccccc
Confidence            467899999999998     5654 48889999999999999998884 78999999999999 6788887 58899999


Q ss_pred             CeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcc
Q 048772          188 RHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKE  267 (333)
Q Consensus       188 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~  267 (333)
                      +.|++++|. ...++ .+..++.++.+++..+....         +.....+++|+. +.+.+.+- ..     ...+++
T Consensus       115 ~~L~l~~~~-~~~~~-~l~~l~~l~~l~~~~n~l~~---------~~~~~~l~~L~~-l~l~~n~l-~~-----i~~l~~  176 (210)
T d1h6ta2         115 KSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD---------ITVLSRLTKLDT-LSLEDNQI-SD-----IVPLAG  176 (210)
T ss_dssp             CEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCC---------CGGGGGCTTCSE-EECCSSCC-CC-----CGGGTT
T ss_pred             ccccccccc-ccccc-cccccccccccccccccccc---------cccccccccccc-cccccccc-cc-----cccccC
Confidence            999999987 55554 58888889888876665433         223445666665 66665321 11     224788


Q ss_pred             cCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEee
Q 048772          268 KKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSR  317 (333)
Q Consensus       268 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~  317 (333)
                      +++|++|++++|..     ..        + +.+..   +++|++|+|++
T Consensus       177 l~~L~~L~Ls~N~i-----~~--------l-~~l~~---l~~L~~L~Ls~  209 (210)
T d1h6ta2         177 LTKLQNLYLSKNHI-----SD--------L-RALAG---LKNLDVLELFS  209 (210)
T ss_dssp             CTTCCEEECCSSCC-----CB--------C-GGGTT---CTTCSEEEEEE
T ss_pred             CCCCCEEECCCCCC-----CC--------C-hhhcC---CCCCCEEEccC
Confidence            99999999998742     11        2 34666   88999999976

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.55  E-value=9.6e-16  Score=134.57  Aligned_cols=200  Identities=18%  Similarity=0.162  Sum_probs=139.7

Q ss_pred             hhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEec
Q 048772           90 LQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEI  168 (333)
Q Consensus        90 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l  168 (333)
                      +.+.+.+.....+|..+.++++|++|++++|.+.    ...|..+..+.+|+++++++|.+. .+|..++++++|+++++
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~----~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l  156 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS----GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE----EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccchhhhcccccc----ccccccccchhhhcccccccccccccCchhhccCcccceeec
Confidence            3444444455567888999999999999999983    334566788999999999998855 77889999999999999


Q ss_pred             cCCCCCCcCChhhhcCCCC-Ceeecccccc-----------------------cccCchhhcCCCCCCccceEEeCCCCC
Q 048772          169 NRCTRLKRLPQGMEKLMNL-RHLIIMNHVY-----------------------LEYMPRGIERLTGLRTLSEFVVGRTGG  224 (333)
Q Consensus       169 ~~~~~~~~lp~~~~~L~~L-~~L~l~~~~~-----------------------l~~~p~~i~~L~~L~~L~~~~~~~~~~  224 (333)
                      ++|.....+|..++.+.++ +.+++++|..                       ...+|..++.+++|+.+++..+...  
T Consensus       157 ~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~--  234 (313)
T d1ogqa_         157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA--  234 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC--
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            9844444788888877765 6666665542                       2233444556666666665544332  


Q ss_pred             cccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCC
Q 048772          225 EHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVC  304 (333)
Q Consensus       225 ~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  304 (333)
                            ..+..+..++.|+. |++..    +...+.+|..++++++|++|+|++|...+.            +| .+.. 
T Consensus       235 ------~~~~~~~~~~~L~~-L~Ls~----N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~------------iP-~~~~-  289 (313)
T d1ogqa_         235 ------FDLGKVGLSKNLNG-LDLRN----NRIYGTLPQGLTQLKFLHSLNVSFNNLCGE------------IP-QGGN-  289 (313)
T ss_dssp             ------CBGGGCCCCTTCCE-EECCS----SCCEECCCGGGGGCTTCCEEECCSSEEEEE------------CC-CSTT-
T ss_pred             ------cccccccccccccc-ccCcc----CeecccCChHHhCCCCCCEEECcCCccccc------------CC-Cccc-
Confidence                  23456677777876 88776    334456788999999999999998853221            22 2233 


Q ss_pred             CCCCCceeeEEeeec-Chh
Q 048772          305 LLWDNCHPLKYSRYG-IWI  322 (333)
Q Consensus       305 ~~~~~L~~L~l~~~~-~~~  322 (333)
                        +.+|+.+++.||. .++
T Consensus       290 --L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         290 --LQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             --GGGSCGGGTCSSSEEES
T ss_pred             --CCCCCHHHhCCCccccC
Confidence              5678888888885 444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.9e-14  Score=108.49  Aligned_cols=101  Identities=22%  Similarity=0.317  Sum_probs=84.2

Q ss_pred             cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeec
Q 048772          113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLII  192 (333)
Q Consensus       113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l  192 (333)
                      |+|++++|++     ..+| .+..+++|++|++++|.++.+|+.++.+++|++|++++ +.++.+| +++++++|++|++
T Consensus         1 R~L~Ls~n~l-----~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDL-----TVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCC-----SSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEEC
T ss_pred             CEEEcCCCCC-----CCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccc-ccccccC-ccccccccCeEEC
Confidence            6789999988     6666 48889999999999999999998899999999999998 7788887 4889999999999


Q ss_pred             ccccccccCc--hhhcCCCCCCccceEEeCCC
Q 048772          193 MNHVYLEYMP--RGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       193 ~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~  222 (333)
                      ++|. +..+|  ..++.+++|++|++.++...
T Consensus        73 ~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          73 CNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSC-CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCc-cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            9988 67666  34788888888888765543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=7.4e-14  Score=114.26  Aligned_cols=147  Identities=18%  Similarity=0.257  Sum_probs=108.8

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN  186 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~  186 (333)
                      ..++.++.|+++++.+     ..++ .+..+++|++|++++|.++.++. ++++++|++|++++ +.+..+| .+.++++
T Consensus        37 ~~l~~l~~L~l~~~~i-----~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~-n~~~~~~-~l~~l~~  107 (199)
T d2omxa2          37 TDLDQVTTLQADRLGI-----KSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN-NQIADIT-PLANLTN  107 (199)
T ss_dssp             HHHTTCCEEECTTSCC-----CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCG-GGTTCTT
T ss_pred             HHhcCCCEEECCCCCC-----CCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccc-ccccccc-ccccccc
Confidence            3578899999999988     5554 57889999999999999888875 88999999999998 6677776 4888999


Q ss_pred             CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772          187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK  266 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~  266 (333)
                      |+.|++++|. ...+ ..+..+++|+.|++.++....         +..+..++.|+. |.+.+..- ..     ...++
T Consensus       108 L~~L~l~~~~-~~~~-~~~~~l~~L~~L~l~~n~l~~---------~~~l~~~~~L~~-L~l~~n~l-~~-----l~~l~  169 (199)
T d2omxa2         108 LTGLTLFNNQ-ITDI-DPLKNLTNLNRLELSSNTISD---------ISALSGLTSLQQ-LNFSSNQV-TD-----LKPLA  169 (199)
T ss_dssp             CSEEECCSSC-CCCC-GGGTTCTTCSEEECCSSCCCC---------CGGGTTCTTCSE-EECCSSCC-CC-----CGGGT
T ss_pred             cccccccccc-cccc-cccchhhhhHHhhhhhhhhcc---------cccccccccccc-cccccccc-cC-----Ccccc
Confidence            9999998887 4444 347888889888887665332         234556666665 66665321 11     22467


Q ss_pred             ccCCCCceEEEecc
Q 048772          267 EKKNLDRLELWFDN  280 (333)
Q Consensus       267 ~l~~L~~L~l~~~~  280 (333)
                      .+++|++|++++|.
T Consensus       170 ~l~~L~~L~ls~N~  183 (199)
T d2omxa2         170 NLTTLERLDISSNK  183 (199)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCC
Confidence            78888888888774

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.7e-14  Score=121.35  Aligned_cols=184  Identities=20%  Similarity=0.243  Sum_probs=121.4

Q ss_pred             hhHhhhcccccceEeeccccccccCCCcc-hHhhcccccCeeeccC-CcCccc-chhhhccccCcEEeccCCCCCCcCC-
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKIP-KAMKNLIHLRFLKLSW-LRIKEL-PETCCELINLETLEINRCTRLKRLP-  178 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~-~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp-  178 (333)
                      +..|.+++.|++|+++++.+     ..++ ..+..+..++.+.... +.++.+ |..+.++++|++|++++ +.+..++ 
T Consensus        49 ~~~f~~l~~L~~L~ls~n~l-----~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~-n~~~~~~~  122 (284)
T d1ozna_          49 AASFRACRNLTILWLHSNVL-----ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR-CGLQELGP  122 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCC-----CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT-SCCCCCCT
T ss_pred             HHHhhccccccccccccccc-----cccccccccccccccccccccccccccccchhhcccccCCEEecCC-cccccccc
Confidence            34556666666666666665     2322 2234455555555433 335555 45678888999999988 5555554 


Q ss_pred             hhhhcCCCCCeeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCc
Q 048772          179 QGMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANV  257 (333)
Q Consensus       179 ~~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~  257 (333)
                      ..++.+.+|+.+++++|. ++.+|.. +..+++|++|++.++....       .....+..++.|+. +.+...    ..
T Consensus       123 ~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~-------l~~~~f~~l~~L~~-l~l~~N----~l  189 (284)
T d1ozna_         123 GLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS-------VPERAFRGLHSLDR-LLLHQN----RV  189 (284)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE-------ECTTTTTTCTTCCE-EECCSS----CC
T ss_pred             cccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcccc-------cchhhhccccccch-hhhhhc----cc
Confidence            456678889999999887 6777644 7788899999887766543       22234556666665 666542    23


Q ss_pred             hhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772          258 DEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI  320 (333)
Q Consensus       258 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~  320 (333)
                      .+..+..+..+++|++|+++.|...+.            .+..+..   +++|+.|+++||.+
T Consensus       190 ~~i~~~~f~~l~~L~~L~l~~N~i~~~------------~~~~~~~---~~~L~~L~l~~N~l  237 (284)
T d1ozna_         190 AHVHPHAFRDLGRLMTLYLFANNLSAL------------PTEALAP---LRALQYLRLNDNPW  237 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCC------------CHHHHTT---CTTCCEEECCSSCE
T ss_pred             cccChhHhhhhhhcccccccccccccc------------ccccccc---ccccCEEEecCCCC
Confidence            344567788899999999998864332            2345566   78899999998754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=4.7e-14  Score=123.06  Aligned_cols=202  Identities=20%  Similarity=0.196  Sum_probs=106.3

Q ss_pred             HHhhhhHhcCCccchhhhhHhhhcccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccchhh-------
Q 048772           86 ASRRLQIKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELPETC-------  157 (333)
Q Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~i-------  157 (333)
                      .++.+.+.+.. .....+..|.++++|++|++++|.+     ..+ |..+..+++|++|++++|+++.+|..+       
T Consensus        32 ~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~~-----~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L  105 (305)
T d1xkua_          32 DTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKI-----SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL  105 (305)
T ss_dssp             TCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCC-----CCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEE
T ss_pred             CCCEEECcCCc-CCCcChhHhhccccccccccccccc-----cccchhhhhCCCccCEecccCCccCcCccchhhhhhhh
Confidence            44455554432 2222234577778888888888877     444 455777888888888877766555331       


Q ss_pred             -----------------------------------------hccccCcEEeccCCCCCCcCChhhhcCCCCCeeeccccc
Q 048772          158 -----------------------------------------CELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHV  196 (333)
Q Consensus       158 -----------------------------------------~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~  196 (333)
                                                               ..+++|+++++++ +.+..+|..+  +++|++|++++|.
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~-n~l~~l~~~~--~~~L~~L~l~~n~  182 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQGL--PPSLTELHLDGNK  182 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSSC--CTTCSEEECTTSC
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc-CCccccCccc--CCccCEEECCCCc
Confidence                                                     1223344444443 2333333321  3344555554444


Q ss_pred             ccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEE
Q 048772          197 YLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLEL  276 (333)
Q Consensus       197 ~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  276 (333)
                      .....|..+..++.++.|++.++....       .....+..+++|+. |++.+..     ...++..+.++++|++|++
T Consensus       183 ~~~~~~~~~~~~~~l~~L~~s~n~l~~-------~~~~~~~~l~~L~~-L~L~~N~-----L~~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         183 ITKVDAASLKGLNNLAKLGLSFNSISA-------VDNGSLANTPHLRE-LHLNNNK-----LVKVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCE-------ECTTTGGGSTTCCE-EECCSSC-----CSSCCTTTTTCSSCCEEEC
T ss_pred             CCCCChhHhhccccccccccccccccc-------ccccccccccccee-eeccccc-----ccccccccccccCCCEEEC
Confidence            333334445555555555554443322       11233344555554 5555421     1234556777788888888


Q ss_pred             EeccCCCCCCCccchHHHHHHhh---hccCCCCCCCceeeEEeeecCh
Q 048772          277 WFDNVGMPDENEENDEAITKIAK---SVRVCLLWDNCHPLKYSRYGIW  321 (333)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~L~~L~l~~~~~~  321 (333)
                      +.|.+..-+..         .+.   ....   ..+|+.|+|.||...
T Consensus       250 s~N~i~~i~~~---------~f~~~~~~~~---~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         250 HNNNISAIGSN---------DFCPPGYNTK---KASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCCCCCTT---------SSSCSSCCTT---SCCCSEEECCSSSSC
T ss_pred             CCCccCccChh---------hccCcchhcc---cCCCCEEECCCCcCc
Confidence            87754332211         111   1222   567888888887664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.46  E-value=1.3e-13  Score=120.29  Aligned_cols=179  Identities=20%  Similarity=0.273  Sum_probs=132.3

Q ss_pred             ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCccc-chhhhccccCcEEeccCCCCCCcCChh-------
Q 048772          110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKEL-PETCCELINLETLEINRCTRLKRLPQG-------  180 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-------  180 (333)
                      +.+++|++++|++     ..+|+ .+.++++|++|++++|.+..+ |..+.++++|++|++++ +.++.+|..       
T Consensus        31 ~~l~~L~Ls~N~i-----~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~-n~l~~l~~~~~~~l~~  104 (305)
T d1xkua_          31 PDTALLDLQNNKI-----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK-NQLKELPEKMPKTLQE  104 (305)
T ss_dssp             TTCCEEECCSSCC-----CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCSBCCSSCCTTCCE
T ss_pred             CCCCEEECcCCcC-----CCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC-CccCcCccchhhhhhh
Confidence            6799999999998     78876 588999999999999999987 46799999999999988 444433321       


Q ss_pred             -----------------------------------------hhcCCCCCeeecccccccccCchhhcCCCCCCccceEEe
Q 048772          181 -----------------------------------------MEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVV  219 (333)
Q Consensus       181 -----------------------------------------~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~  219 (333)
                                                               +..+++|+.+++++|. +..+|..+  .++|++|++.++
T Consensus       105 L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~--~~~L~~L~l~~n  181 (305)
T d1xkua_         105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGN  181 (305)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC--CTTCSEEECTTS
T ss_pred             hhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCccc--CCccCEEECCCC
Confidence                                                     2455668888888877 67777553  678999988765


Q ss_pred             CCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhh
Q 048772          220 GRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAK  299 (333)
Q Consensus       220 ~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  299 (333)
                      ....       .....+..++.++. |.+.+.    ......+..+..+++|++|+|+.|..     ..        +++
T Consensus       182 ~~~~-------~~~~~~~~~~~l~~-L~~s~n----~l~~~~~~~~~~l~~L~~L~L~~N~L-----~~--------lp~  236 (305)
T d1xkua_         182 KITK-------VDAASLKGLNNLAK-LGLSFN----SISAVDNGSLANTPHLRELHLNNNKL-----VK--------VPG  236 (305)
T ss_dssp             CCCE-------ECTGGGTTCTTCCE-EECCSS----CCCEECTTTGGGSTTCCEEECCSSCC-----SS--------CCT
T ss_pred             cCCC-------CChhHhhccccccc-cccccc----cccccccccccccccceeeecccccc-----cc--------ccc
Confidence            5443       33455666777775 766652    22333356677899999999998742     11        455


Q ss_pred             hccCCCCCCCceeeEEeeecChhhhhh
Q 048772          300 SVRVCLLWDNCHPLKYSRYGIWIVWKE  326 (333)
Q Consensus       300 ~l~~~~~~~~L~~L~l~~~~~~~~~p~  326 (333)
                      .+..   +++|+.|++++|.+.. +|.
T Consensus       237 ~l~~---l~~L~~L~Ls~N~i~~-i~~  259 (305)
T d1xkua_         237 GLAD---HKYIQVVYLHNNNISA-IGS  259 (305)
T ss_dssp             TTTT---CSSCCEEECCSSCCCC-CCT
T ss_pred             cccc---ccCCCEEECCCCccCc-cCh
Confidence            6667   8899999999998877 654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.2e-13  Score=117.62  Aligned_cols=188  Identities=16%  Similarity=0.158  Sum_probs=140.0

Q ss_pred             ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcC-ChhhhcCCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRL-PQGMEKLMN  186 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~l-p~~~~~L~~  186 (333)
                      +.+++|++++|++     ..+|. .+.+++.|++|+++++.+..++ ..+..+..+..++...++.+..+ |..+.++++
T Consensus        32 ~~~~~L~Ls~N~i-----~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~  106 (284)
T d1ozna_          32 AASQRIFLHGNRI-----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR  106 (284)
T ss_dssp             TTCSEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred             CCCCEEECcCCcC-----CCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhccccc
Confidence            5689999999998     67775 5889999999999999988776 45677889999988776778877 456889999


Q ss_pred             CCeeecccccccccCc-hhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772          187 LRHLIIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL  265 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l  265 (333)
                      |+.|++++|. +..++ ..++.+++|+.+++..+....       .....+..++.|+. |++.+.    ......+..+
T Consensus       107 L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~-------i~~~~f~~~~~L~~-L~l~~N----~l~~l~~~~f  173 (284)
T d1ozna_         107 LHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQA-------LPDDTFRDLGNLTH-LFLHGN----RISSVPERAF  173 (284)
T ss_dssp             CCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCE-EECCSS----CCCEECTTTT
T ss_pred             CCEEecCCcc-cccccccccchhcccchhhhccccccc-------cChhHhccccchhh-cccccC----cccccchhhh
Confidence            9999999998 55554 457788999999988776554       11233455666665 766653    2233345677


Q ss_pred             cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhh
Q 048772          266 KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN  330 (333)
Q Consensus       266 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~  330 (333)
                      ..+++|+.|+++.|...+.            .+..+..   +++|++|++++|......|.++..
T Consensus       174 ~~l~~L~~l~l~~N~l~~i------------~~~~f~~---l~~L~~L~l~~N~i~~~~~~~~~~  223 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAHV------------HPHAFRD---LGRLMTLYLFANNLSALPTEALAP  223 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEE------------CTTTTTT---CTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             ccccccchhhhhhcccccc------------ChhHhhh---hhhccccccccccccccccccccc
Confidence            8899999999998753211            2345566   789999999999888734567654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=1.4e-13  Score=112.54  Aligned_cols=157  Identities=18%  Similarity=0.213  Sum_probs=120.6

Q ss_pred             hhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCc
Q 048772          134 MKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRT  213 (333)
Q Consensus       134 ~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~  213 (333)
                      ...+.++++|+++++.++.++ .+..+++|++|++++ +.+..++. ++++++|++|++++|. +..+| .++.++.|++
T Consensus        36 ~~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~-N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~  110 (199)
T d2omxa2          36 QTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSN-NQLTDITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTG  110 (199)
T ss_dssp             HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSE
T ss_pred             HHHhcCCCEEECCCCCCCCcc-ccccCCCcCcCcccc-ccccCccc-ccCCcccccccccccc-ccccc-cccccccccc
Confidence            456889999999999999886 588999999999999 67888875 9999999999999998 67776 4889999999


Q ss_pred             cceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHH
Q 048772          214 LSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEA  293 (333)
Q Consensus       214 L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  293 (333)
                      |++.++....         +..+..+++|+. +++.+.+- .     ....+..+++|+.|++.+|....          
T Consensus       111 L~l~~~~~~~---------~~~~~~l~~L~~-L~l~~n~l-~-----~~~~l~~~~~L~~L~l~~n~l~~----------  164 (199)
T d2omxa2         111 LTLFNNQITD---------IDPLKNLTNLNR-LELSSNTI-S-----DISALSGLTSLQQLNFSSNQVTD----------  164 (199)
T ss_dssp             EECCSSCCCC---------CGGGTTCTTCSE-EECCSSCC-C-----CCGGGTTCTTCSEEECCSSCCCC----------
T ss_pred             cccccccccc---------ccccchhhhhHH-hhhhhhhh-c-----ccccccccccccccccccccccC----------
Confidence            9987665443         234566777776 77765321 1     12357788999999999874211          


Q ss_pred             HHHHhhhccCCCCCCCceeeEEeeecChhhhhhhHhh
Q 048772          294 ITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKEWVMN  330 (333)
Q Consensus       294 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~w~~~  330 (333)
                          ++.+..   +++|++|++++|.+.. +|. ++.
T Consensus       165 ----l~~l~~---l~~L~~L~ls~N~i~~-i~~-l~~  192 (199)
T d2omxa2         165 ----LKPLAN---LTTLERLDISSNKVSD-ISV-LAK  192 (199)
T ss_dssp             ----CGGGTT---CTTCCEEECCSSCCCC-CGG-GGG
T ss_pred             ----CccccC---CCCCCEEECCCCCCCC-Ccc-ccC
Confidence                134566   8899999999998877 764 443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=2.5e-13  Score=102.25  Aligned_cols=99  Identities=22%  Similarity=0.280  Sum_probs=81.4

Q ss_pred             CeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcCCCCCCccceEEeC
Q 048772          141 RFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVG  220 (333)
Q Consensus       141 ~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~  220 (333)
                      |+|++++|.++.+|. ++++++|++|++++ +.++++|..++.+++|++|++++|. +..+| +++++++|++|++.++.
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCC-CccCcchhhhhhhhccccccccccc-ccccC-ccccccccCeEECCCCc
Confidence            689999999999885 89999999999999 8899999999999999999999998 78886 58999999999998776


Q ss_pred             CCCCcccCcccchhhhcCcccccceeEEcc
Q 048772          221 RTGGEHASKVCKLEALKGMNHLRGLLKIRM  250 (333)
Q Consensus       221 ~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~  250 (333)
                      ...      ...+..+..+++|+. +++.+
T Consensus        77 i~~------~~~~~~l~~~~~L~~-L~l~~   99 (124)
T d1dcea3          77 LQQ------SAAIQPLVSCPRLVL-LNLQG   99 (124)
T ss_dssp             CCS------SSTTGGGGGCTTCCE-EECTT
T ss_pred             cCC------CCCchhhcCCCCCCE-EECCC
Confidence            554      233445555566665 55544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=3e-13  Score=112.82  Aligned_cols=175  Identities=18%  Similarity=0.189  Sum_probs=111.9

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN  186 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~  186 (333)
                      ..+.+|+.|++.+|.+     ..++ .+.++++|++|++++|.+..+++ +.++++|+++++++ +.++.++ .+.++++
T Consensus        38 ~~l~~L~~L~l~~~~i-----~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~-n~~~~i~-~l~~l~~  108 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGV-----TTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG-NPLKNVS-AIAGLQS  108 (227)
T ss_dssp             HHHHTCCEEECTTSCC-----CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS-CCCSCCG-GGTTCTT
T ss_pred             HHcCCcCEEECCCCCC-----Ccch-hHhcCCCCcEeecCCceeecccc-cccccccccccccc-ccccccc-ccccccc
Confidence            4577888888888887     6664 57888888888888888877664 78888888888887 5566665 4778888


Q ss_pred             CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772          187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK  266 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~  266 (333)
                      |+.+.+++|. ...+ ..+...+.++.+.+..+....         ...+...+.|+. |.+.+..- .     ....++
T Consensus       109 L~~l~l~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~L~~-L~l~~n~~-~-----~~~~l~  170 (227)
T d1h6ua2         109 IKTLDLTSTQ-ITDV-TPLAGLSNLQVLYLDLNQITN---------ISPLAGLTNLQY-LSIGNAQV-S-----DLTPLA  170 (227)
T ss_dssp             CCEEECTTSC-CCCC-GGGTTCTTCCEEECCSSCCCC---------CGGGGGCTTCCE-EECCSSCC-C-----CCGGGT
T ss_pred             cccccccccc-cccc-chhccccchhhhhchhhhhch---------hhhhcccccccc-cccccccc-c-----cchhhc
Confidence            8888888776 3333 235556666666654433222         122334445554 55544221 1     112366


Q ss_pred             ccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhh
Q 048772          267 EKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKE  326 (333)
Q Consensus       267 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~  326 (333)
                      .+++|+.|++++|...+             + ..+..   +++|++|++++|.+.+ +|.
T Consensus       171 ~l~~L~~L~Ls~n~l~~-------------l-~~l~~---l~~L~~L~Ls~N~lt~-i~~  212 (227)
T d1h6ua2         171 NLSKLTTLKADDNKISD-------------I-SPLAS---LPNLIEVHLKNNQISD-VSP  212 (227)
T ss_dssp             TCTTCCEEECCSSCCCC-------------C-GGGGG---CTTCCEEECTTSCCCB-CGG
T ss_pred             ccccceecccCCCccCC-------------C-hhhcC---CCCCCEEECcCCcCCC-Ccc
Confidence            67778888887664211             1 12444   6778888888777766 653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=8.6e-13  Score=108.69  Aligned_cols=146  Identities=25%  Similarity=0.342  Sum_probs=116.8

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM  185 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~  185 (333)
                      +..+++|++|++++|.+     ..++ .++.+++|++|++++|.++.+| .+.++++|+.|++++ +.+..++ .+..++
T Consensus        64 l~~l~~L~~L~L~~n~i-----~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~-~~~~~~~-~l~~l~  134 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKL-----TDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH-NGISDIN-GLVHLP  134 (210)
T ss_dssp             GGGCTTCCEEECCSSCC-----CCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT-SCCCCCG-GGGGCT
T ss_pred             HhhCCCCCEEeCCCccc-----cCcc-ccccCccccccccccccccccc-ccccccccccccccc-ccccccc-cccccc
Confidence            57799999999999998     6666 4788999999999999999988 588999999999999 5566665 588999


Q ss_pred             CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772          186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL  265 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l  265 (333)
                      +|+.+++++|. +...+ .++.+++|+++++.++....         +..+.++++|+. |++.+.. +.    .+ ..+
T Consensus       135 ~l~~l~~~~n~-l~~~~-~~~~l~~L~~l~l~~n~l~~---------i~~l~~l~~L~~-L~Ls~N~-i~----~l-~~l  196 (210)
T d1h6ta2         135 QLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQISD---------IVPLAGLTKLQN-LYLSKNH-IS----DL-RAL  196 (210)
T ss_dssp             TCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCC---------CGGGTTCTTCCE-EECCSSC-CC----BC-GGG
T ss_pred             ccccccccccc-ccccc-cccccccccccccccccccc---------cccccCCCCCCE-EECCCCC-CC----CC-hhh
Confidence            99999999987 55544 57889999999987766443         234677788886 8877632 22    22 358


Q ss_pred             cccCCCCceEEEe
Q 048772          266 KEKKNLDRLELWF  278 (333)
Q Consensus       266 ~~l~~L~~L~l~~  278 (333)
                      ..+++|+.|+|+.
T Consensus       197 ~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         197 AGLKNLDVLELFS  209 (210)
T ss_dssp             TTCTTCSEEEEEE
T ss_pred             cCCCCCCEEEccC
Confidence            8899999999973

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.1e-13  Score=109.42  Aligned_cols=108  Identities=24%  Similarity=0.233  Sum_probs=85.3

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChh-hhcCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQG-MEKLM  185 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~L~  185 (333)
                      .+...+|.|++++|++     ..+|..+..+++|++|++++|.+++++ .+..+++|++|++++ +.+..+|.. +..++
T Consensus        15 ~n~~~lr~L~L~~n~I-----~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~-N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          15 TNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNN-NRICRIGEGLDQALP   87 (162)
T ss_dssp             ECTTSCEEEECTTSCC-----CSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCS-SCCCEECSCHHHHCT
T ss_pred             cCcCcCcEEECCCCCC-----CccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccc-ccccCCCcccccccc
Confidence            4566788999999988     777766677889999999999988885 478889999999998 668888765 45788


Q ss_pred             CCCeeecccccccccCch--hhcCCCCCCccceEEeCCC
Q 048772          186 NLRHLIIMNHVYLEYMPR--GIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~  222 (333)
                      +|++|++++|. +..++.  .+..+++|++|++.++...
T Consensus        88 ~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          88 DLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             TCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccccceecccc-ccccccccccccccccchhhcCCCccc
Confidence            99999999887 666653  4777888888887766543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.5e-13  Score=117.35  Aligned_cols=162  Identities=17%  Similarity=0.179  Sum_probs=72.0

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCc-Cc--ccchhhhccccCcEEeccCCCCCCc--
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-IK--ELPETCCELINLETLEINRCTRLKR--  176 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~--~lp~~i~~L~~L~~L~l~~~~~~~~--  176 (333)
                      +..++..+++|++|++++|.+.    ...+..+.++++|++|++++|. ++  .+......+++|++|++++|..+..  
T Consensus        63 l~~l~~~c~~L~~L~L~~~~l~----~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~  138 (284)
T d2astb2          63 LHGILSQCSKLQNLSLEGLRLS----DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH  138 (284)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCC----HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred             HHHHHHhCCCcccccccccCCC----cHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccccccccc
Confidence            3444555555555555555431    2233445555555555555542 33  1222234455555555555544431  


Q ss_pred             CChhhhcC-CCCCeeeccccc-cccc--CchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccC
Q 048772          177 LPQGMEKL-MNLRHLIIMNHV-YLEY--MPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLG  252 (333)
Q Consensus       177 lp~~~~~L-~~L~~L~l~~~~-~l~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~  252 (333)
                      ++..+..+ ++|+.|++++|. .+..  ++.-..++++|++|++.++....      +..+..+.++++|+. |++.++.
T Consensus       139 ~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it------d~~~~~l~~~~~L~~-L~L~~C~  211 (284)
T d2astb2         139 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK------NDCFQEFFQLNYLQH-LSLSRCY  211 (284)
T ss_dssp             HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC------GGGGGGGGGCTTCCE-EECTTCT
T ss_pred             chhhhcccccccchhhhcccccccccccccccccccccccccccccccCCC------chhhhhhcccCcCCE-EECCCCC
Confidence            12222222 355555555442 1111  11112345555555554443322      234444445555554 5555443


Q ss_pred             CCCCchhhhhhcCcccCCCCceEEE
Q 048772          253 DLANVDEAKHVDLKEKKNLDRLELW  277 (333)
Q Consensus       253 ~~~~~~~~~~~~l~~l~~L~~L~l~  277 (333)
                      .++   +.....++++++|+.|+++
T Consensus       212 ~i~---~~~l~~L~~~~~L~~L~l~  233 (284)
T d2astb2         212 DII---PETLLELGEIPTLKTLQVF  233 (284)
T ss_dssp             TCC---GGGGGGGGGCTTCCEEECT
T ss_pred             CCC---hHHHHHHhcCCCCCEEeee
Confidence            322   2233344555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.6e-13  Score=105.14  Aligned_cols=133  Identities=17%  Similarity=0.193  Sum_probs=100.0

Q ss_pred             hhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchh-hcCCCCCC
Q 048772          134 MKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRG-IERLTGLR  212 (333)
Q Consensus       134 ~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~  212 (333)
                      +.++..+|.|++++|.|+.+|.....+.+|++|++++ +.+..++ .+..+++|++|++++|. +..+|.+ +..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~-N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSD-NEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCS-SCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCC-CCCCccC-CcccCcchhhhhccccc-ccCCCccccccccccc
Confidence            5567789999999999999998778899999999999 7898885 58899999999999998 7888766 56899999


Q ss_pred             ccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEE
Q 048772          213 TLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELW  277 (333)
Q Consensus       213 ~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  277 (333)
                      +|++.++....      ...+..+..+++|+. +++.+..- ..........++.+++|+.|+-.
T Consensus        91 ~L~L~~N~i~~------~~~l~~l~~l~~L~~-L~l~~N~i-~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          91 ELILTNNSLVE------LGDLDPLASLKSLTY-LCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             EEECCSCCCCC------GGGGGGGGGCTTCCE-EECCSSGG-GGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cceeccccccc------cccccccccccccch-hhcCCCcc-ccccchHHHHHHHCCCcCeeCCC
Confidence            99998877654      333455667777776 77765321 11111112245667777777643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=1.2e-11  Score=110.47  Aligned_cols=177  Identities=19%  Similarity=0.221  Sum_probs=109.8

Q ss_pred             HhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcC
Q 048772          105 VFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKL  184 (333)
Q Consensus       105 ~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L  184 (333)
                      .+..++.++.++++++.+     ..+++ ...+++|+.|++++|.++.+| .+..+++|+.|++++ +.+..++. ++.+
T Consensus       192 ~~~~l~~~~~l~l~~n~i-----~~~~~-~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~-n~l~~~~~-~~~~  262 (384)
T d2omza2         192 VLAKLTNLESLIATNNQI-----SDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLAN-NQISNLAP-LSGL  262 (384)
T ss_dssp             GGGGCTTCSEEECCSSCC-----CCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG-GTTC
T ss_pred             ccccccccceeeccCCcc-----CCCCc-ccccCCCCEEECCCCCCCCcc-hhhcccccchhcccc-CccCCCCc-cccc
Confidence            345667788888888876     44442 566778888888888877765 577888888888888 55666653 7778


Q ss_pred             CCCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhc
Q 048772          185 MNLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVD  264 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~  264 (333)
                      ++|++|+++++. +..++. +..++.++.+....+....         +..+..++.++. +++....    ..+ . ..
T Consensus       263 ~~L~~L~l~~~~-l~~~~~-~~~~~~l~~l~~~~n~l~~---------~~~~~~~~~l~~-L~ls~n~----l~~-l-~~  324 (384)
T d2omza2         263 TKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLED---------ISPISNLKNLTY-LTLYFNN----ISD-I-SP  324 (384)
T ss_dssp             TTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSC---------CGGGGGCTTCSE-EECCSSC----CSC-C-GG
T ss_pred             ccCCEeeccCcc-cCCCCc-ccccccccccccccccccc---------ccccchhcccCe-EECCCCC----CCC-C-cc
Confidence            888888888776 555543 5566666666655443322         223444444443 4444321    111 1 23


Q ss_pred             CcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecChhhhhh
Q 048772          265 LKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGIWIVWKE  326 (333)
Q Consensus       265 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~p~  326 (333)
                      +..+++|++|++++|....              +..+..   +++|++|++++|.+.+ +|.
T Consensus       325 l~~l~~L~~L~L~~n~l~~--------------l~~l~~---l~~L~~L~l~~N~l~~-l~~  368 (384)
T d2omza2         325 VSSLTKLQRLFFANNKVSD--------------VSSLAN---LTNINWLSAGHNQISD-LTP  368 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCC--------------CGGGGG---CTTCCEEECCSSCCCB-CGG
T ss_pred             cccCCCCCEEECCCCCCCC--------------ChhHcC---CCCCCEEECCCCcCCC-Chh
Confidence            5667777777777663211              123445   6677777777777666 553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=8.6e-12  Score=111.48  Aligned_cols=168  Identities=17%  Similarity=0.249  Sum_probs=130.7

Q ss_pred             hhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCC
Q 048772          107 KQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMN  186 (333)
Q Consensus       107 ~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~  186 (333)
                      ...+.|+.|++++|.+     ..+| .+..+++|+.|++++|.++.++. ++.+++|++|++++ +.+..++. +..++.
T Consensus       216 ~~~~~L~~L~l~~n~l-----~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~-~~l~~~~~-~~~~~~  286 (384)
T d2omza2         216 GILTNLDELSLNGNQL-----KDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGA-NQISNISP-LAGLTA  286 (384)
T ss_dssp             GGCTTCCEEECCSSCC-----CCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS-SCCCCCGG-GTTCTT
T ss_pred             cccCCCCEEECCCCCC-----CCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccC-cccCCCCc-cccccc
Confidence            5678899999999998     6655 68889999999999999998875 88899999999998 67777764 778999


Q ss_pred             CCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcCc
Q 048772          187 LRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLK  266 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~  266 (333)
                      ++.+.+..|. +..++ .+..++++++|++..+....         +..+..+++|+. |++.+.. ++.     ...++
T Consensus       287 l~~l~~~~n~-l~~~~-~~~~~~~l~~L~ls~n~l~~---------l~~l~~l~~L~~-L~L~~n~-l~~-----l~~l~  348 (384)
T d2omza2         287 LTNLELNENQ-LEDIS-PISNLKNLTYLTLYFNNISD---------ISPVSSLTKLQR-LFFANNK-VSD-----VSSLA  348 (384)
T ss_dssp             CSEEECCSSC-CSCCG-GGGGCTTCSEEECCSSCCSC---------CGGGGGCTTCCE-EECCSSC-CCC-----CGGGG
T ss_pred             cccccccccc-ccccc-ccchhcccCeEECCCCCCCC---------CcccccCCCCCE-EECCCCC-CCC-----ChhHc
Confidence            9999999887 56554 58889999999988766543         223666777776 7777642 222     23588


Q ss_pred             ccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeee
Q 048772          267 EKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRY  318 (333)
Q Consensus       267 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~  318 (333)
                      ++++|++|++++|...+             +. .+..   +++|+.|+|++|
T Consensus       349 ~l~~L~~L~l~~N~l~~-------------l~-~l~~---l~~L~~L~L~~N  383 (384)
T d2omza2         349 NLTNINWLSAGHNQISD-------------LT-PLAN---LTRITQLGLNDQ  383 (384)
T ss_dssp             GCTTCCEEECCSSCCCB-------------CG-GGTT---CTTCSEEECCCE
T ss_pred             CCCCCCEEECCCCcCCC-------------Ch-hhcc---CCCCCEeeCCCC
Confidence            89999999999885211             21 2555   889999999887

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=2.2e-13  Score=111.18  Aligned_cols=112  Identities=24%  Similarity=0.320  Sum_probs=81.0

Q ss_pred             hhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCCh
Q 048772          100 KELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQ  179 (333)
Q Consensus       100 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~  179 (333)
                      ..++..+..+++|+.|++++|.+     ..++ .+..+++|++|++++|.++.+|.....+.+|++|++++ +.+..++ 
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I-----~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~-N~i~~l~-  109 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNI-----EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS-  109 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEE-----SCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE-EECCCHH-
T ss_pred             hhhhhHHhcccccceeECcccCC-----CCcc-cccCCccccChhhccccccccccccccccccccccccc-ccccccc-
Confidence            34556677788888888888877     5554 47778888888888888877776666667788888887 5677664 


Q ss_pred             hhhcCCCCCeeecccccccccCc--hhhcCCCCCCccceEEeC
Q 048772          180 GMEKLMNLRHLIIMNHVYLEYMP--RGIERLTGLRTLSEFVVG  220 (333)
Q Consensus       180 ~~~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~  220 (333)
                      .+.++++|++|++++|. +..++  ..++.+++|++|++.++.
T Consensus       110 ~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccccccch-hccccccccccCCCccceeecCCCc
Confidence            47777888888888776 56655  346777777777776543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.1e-12  Score=113.21  Aligned_cols=187  Identities=14%  Similarity=0.066  Sum_probs=133.1

Q ss_pred             hcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCc-ccchhhhccccCcEEeccCCCCCCc--CChhhhcC
Q 048772          108 QFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-ELPETCCELINLETLEINRCTRLKR--LPQGMEKL  184 (333)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~--lp~~~~~L  184 (333)
                      ....|++|+++++.+.   ...++..+.++++|++|+++++.+. ..+..++++++|++|++++|+.++.  +..-..++
T Consensus        44 ~~~~L~~LdLs~~~i~---~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          44 SPFRVQHMDLSNSVIE---VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CCBCCCEEECTTCEEC---HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             cCCCCCEEECCCCccC---HHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence            4468999999998762   1334555788999999999999876 5677889999999999999887764  33335678


Q ss_pred             CCCCeeeccccccccc--CchhhcC-CCCCCccceEEeCCCCCcccCcccchhhh-cCcccccceeEEcccCCCCCchhh
Q 048772          185 MNLRHLIIMNHVYLEY--MPRGIER-LTGLRTLSEFVVGRTGGEHASKVCKLEAL-KGMNHLRGLLKIRMLGDLANVDEA  260 (333)
Q Consensus       185 ~~L~~L~l~~~~~l~~--~p~~i~~-L~~L~~L~~~~~~~~~~~~~~~~~~~~~L-~~L~~L~~~L~~~~~~~~~~~~~~  260 (333)
                      ++|++|++++|..+..  ++..+.. .++|++|++.++...-     ....+..+ ..+++|+. |++.+...+   .+.
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i-----~~~~l~~l~~~~~~L~~-L~L~~~~~i---td~  191 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL-----QKSDLSTLVRRCPNLVH-LDLSDSVML---KND  191 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS-----CHHHHHHHHHHCTTCSE-EECTTCTTC---CGG
T ss_pred             Hhccccccccccccccccchhhhcccccccchhhhccccccc-----ccccccccccccccccc-cccccccCC---Cch
Confidence            9999999999875543  2233444 4689999887653211     12334333 45678887 888775544   345


Q ss_pred             hhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEeeecC
Q 048772          261 KHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSRYGI  320 (333)
Q Consensus       261 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~  320 (333)
                      ....+.++++|++|++++|.    ..   ...    .+..+..   +++|+.|++.|+..
T Consensus       192 ~~~~l~~~~~L~~L~L~~C~----~i---~~~----~l~~L~~---~~~L~~L~l~~~~~  237 (284)
T d2astb2         192 CFQEFFQLNYLQHLSLSRCY----DI---IPE----TLLELGE---IPTLKTLQVFGIVP  237 (284)
T ss_dssp             GGGGGGGCTTCCEEECTTCT----TC---CGG----GGGGGGG---CTTCCEEECTTSSC
T ss_pred             hhhhhcccCcCCEEECCCCC----CC---ChH----HHHHHhc---CCCCCEEeeeCCCC
Confidence            66778889999999998653    11   122    4556777   88999999999843

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.25  E-value=1.6e-11  Score=102.06  Aligned_cols=168  Identities=18%  Similarity=0.226  Sum_probs=124.9

Q ss_pred             hhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCC
Q 048772          106 FKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLM  185 (333)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~  185 (333)
                      +..+++|++|++++|.+     ..++ .+..+++|+++++++|.++.++ .+..+++|+++++++| ....++ .+...+
T Consensus        59 l~~l~~L~~L~ls~n~i-----~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~-~~~~~~-~~~~~~  129 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQI-----TDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVT-PLAGLS  129 (227)
T ss_dssp             GGGCTTCCEEECCSSCC-----CCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCG-GGTTCT
T ss_pred             HhcCCCCcEeecCCcee-----eccc-cccccccccccccccccccccc-cccccccccccccccc-cccccc-hhcccc
Confidence            67899999999999998     5554 4899999999999999998886 4789999999999984 444443 366788


Q ss_pred             CCCeeecccccccccCchhhcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcccCCCCCchhhhhhcC
Q 048772          186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDL  265 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l  265 (333)
                      .+..+.++++. +... ..+..+++|++|++..+....         ...+.++++|+. |++.+.. +..     ...+
T Consensus       130 ~~~~l~~~~~~-~~~~-~~~~~~~~L~~L~l~~n~~~~---------~~~l~~l~~L~~-L~Ls~n~-l~~-----l~~l  191 (227)
T d1h6ua2         130 NLQVLYLDLNQ-ITNI-SPLAGLTNLQYLSIGNAQVSD---------LTPLANLSKLTT-LKADDNK-ISD-----ISPL  191 (227)
T ss_dssp             TCCEEECCSSC-CCCC-GGGGGCTTCCEEECCSSCCCC---------CGGGTTCTTCCE-EECCSSC-CCC-----CGGG
T ss_pred             chhhhhchhhh-hchh-hhhcccccccccccccccccc---------chhhccccccee-cccCCCc-cCC-----Chhh
Confidence            99999998876 4443 347788999999987665443         223566777776 7776632 222     2347


Q ss_pred             cccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCceeeEEee
Q 048772          266 KEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCHPLKYSR  317 (333)
Q Consensus       266 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~  317 (333)
                      +.+++|++|+++.|....             + ..+..   +++|+.|++++
T Consensus       192 ~~l~~L~~L~Ls~N~lt~-------------i-~~l~~---l~~L~~L~lsn  226 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQISD-------------V-SPLAN---TSNLFIVTLTN  226 (227)
T ss_dssp             GGCTTCCEEECTTSCCCB-------------C-GGGTT---CTTCCEEEEEE
T ss_pred             cCCCCCCEEECcCCcCCC-------------C-ccccc---CCCCCEEEeeC
Confidence            889999999999774211             2 23556   88999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=1.1e-12  Score=107.08  Aligned_cols=112  Identities=22%  Similarity=0.273  Sum_probs=95.5

Q ss_pred             CCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCeeecccccccccCchhhcC
Q 048772          128 SKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRHLIIMNHVYLEYMPRGIER  207 (333)
Q Consensus       128 ~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~L~l~~~~~l~~~p~~i~~  207 (333)
                      ..+|.++..+++|++|++++|.|+.++ .+..+++|++|++++ +.++.+|.....+++|++|++++|. +..++ .+..
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~-N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~-~~~~  113 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEK  113 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCE-EEECSCSSHHHHHHHCCEEECSEEE-CCCHH-HHHH
T ss_pred             hhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcc-ccccccccccccccccccccccccc-ccccc-cccc
Confidence            667889999999999999999999987 589999999999999 7789998767777899999999997 77764 5888


Q ss_pred             CCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcc
Q 048772          208 LTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRM  250 (333)
Q Consensus       208 L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~  250 (333)
                      +++|++|++.++....      ...+..+..+++|+. |.+.+
T Consensus       114 l~~L~~L~L~~N~i~~------~~~~~~l~~l~~L~~-L~L~~  149 (198)
T d1m9la_         114 LVNLRVLYMSNNKITN------WGEIDKLAALDKLED-LLLAG  149 (198)
T ss_dssp             HHHSSEEEESEEECCC------HHHHHHHTTTTTCSE-EEECS
T ss_pred             cccccccccccchhcc------ccccccccCCCccce-eecCC
Confidence            9999999999887654      334567888888987 88876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.8e-12  Score=104.87  Aligned_cols=103  Identities=19%  Similarity=0.291  Sum_probs=67.4

Q ss_pred             ccccceEeeccccccccCCCcch-HhhcccccCeeeccCCcCcc-cc-hhhhccccCcEEeccCCCCCCcCC-hhhhcCC
Q 048772          110 TCLRALRICGENVWEIGNSKIPK-AMKNLIHLRFLKLSWLRIKE-LP-ETCCELINLETLEINRCTRLKRLP-QGMEKLM  185 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~i~~-lp-~~i~~L~~L~~L~l~~~~~~~~lp-~~~~~L~  185 (333)
                      +.+++|++++|.+     ..+|. .+.++++|++|++++|.+.. +| ..+.++++++++.+..|+.+..++ ..+.+++
T Consensus        29 ~~l~~L~Ls~n~i-----~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~  103 (242)
T d1xwdc1          29 RNAIELRFVLTKL-----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP  103 (242)
T ss_dssp             SCCSEEEEESCCC-----CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCT
T ss_pred             CCCCEEECcCCcC-----CccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccc
Confidence            4677888888877     55654 46778888888888877653 33 356677788888776656565544 4467778


Q ss_pred             CCCeeecccccccccCchhhcCCCCCCccceEEe
Q 048772          186 NLRHLIIMNHVYLEYMPRGIERLTGLRTLSEFVV  219 (333)
Q Consensus       186 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~  219 (333)
                      +|+++++++|. +...|. ...+.+++.+.....
T Consensus       104 ~L~~l~l~~~~-l~~~~~-~~~~~~l~~l~~~~~  135 (242)
T d1xwdc1         104 NLQYLLISNTG-IKHLPD-VHKIHSLQKVLLDIQ  135 (242)
T ss_dssp             TCCEEEEESCC-CCSCCC-CTTTCBSSCEEEEEE
T ss_pred             cccccccchhh-hccccc-ccccccccccccccc
Confidence            88888887776 454442 444555555554433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=2.5e-11  Score=98.27  Aligned_cols=107  Identities=15%  Similarity=0.176  Sum_probs=85.6

Q ss_pred             ccccceEeeccccccccCCCc-chHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCCh-hhhcCCC
Q 048772          110 TCLRALRICGENVWEIGNSKI-PKAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLPQ-GMEKLMN  186 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~  186 (333)
                      +.+++|++++|.+.    ..+ +..+..+++|+.|++++|.+..++ ..+..+++|++|++++ +.+..+|. .|.++++
T Consensus        29 ~~l~~L~Ls~N~i~----~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~-N~l~~l~~~~F~~l~~  103 (192)
T d1w8aa_          29 LHTTELLLNDNELG----RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSCCCC----SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTT
T ss_pred             CCCCEEEeCCCCCc----ccccccccCCCceEeeeeccccccccccccccccccccceeeecc-ccccccCHHHHhCCCc
Confidence            57889999999882    223 345788999999999999988665 6778899999999998 77888865 4788999


Q ss_pred             CCeeecccccccccCchh-hcCCCCCCccceEEeCCC
Q 048772          187 LRHLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       187 L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~  222 (333)
                      |++|++++|. +..+|.+ +..+++|++|++.++...
T Consensus       104 L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         104 LKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCCcc-ccccCHHHhcCCcccccccccccccc
Confidence            9999999988 7777755 788999999988766544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.11  E-value=5.3e-11  Score=96.27  Aligned_cols=122  Identities=18%  Similarity=0.254  Sum_probs=94.2

Q ss_pred             ccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-cc-hhhhccccCcEEeccCCCCCCcC-ChhhhcCCCCC
Q 048772          112 LRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-LP-ETCCELINLETLEINRCTRLKRL-PQGMEKLMNLR  188 (333)
Q Consensus       112 L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-lp-~~i~~L~~L~~L~l~~~~~~~~l-p~~~~~L~~L~  188 (333)
                      .++++.+++++     ..+|..+.  +++++|+|++|.|+. ++ ..++++++|+.|++++ +.+..+ +..+..+++|+
T Consensus        10 ~~~v~Cs~~~L-----~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~-N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_          10 GTTVDCTGRGL-----KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             TTEEECTTSCC-----SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCC
T ss_pred             CCEEEEeCCCc-----CccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccc-cccccccccccccccccc
Confidence            45788888888     77787653  689999999999974 43 5679999999999999 666655 45688899999


Q ss_pred             eeecccccccccCchh-hcCCCCCCccceEEeCCCCCcccCcccchhhhcCcccccceeEEcc
Q 048772          189 HLIIMNHVYLEYMPRG-IERLTGLRTLSEFVVGRTGGEHASKVCKLEALKGMNHLRGLLKIRM  250 (333)
Q Consensus       189 ~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~  250 (333)
                      +|++++|. +..+|.. |.++++|++|++.++....       -....+..+++|+. +++.+
T Consensus        82 ~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~-------i~~~~f~~l~~L~~-l~L~~  135 (192)
T d1w8aa_          82 ELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISC-------VMPGSFEHLNSLTS-LNLAS  135 (192)
T ss_dssp             EEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCE-------ECTTSSTTCTTCCE-EECTT
T ss_pred             eeeecccc-ccccCHHHHhCCCcccccccCCccccc-------cCHHHhcCCccccc-ccccc
Confidence            99999998 7787755 8999999999998877654       22233455566665 66654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.5e-10  Score=89.00  Aligned_cols=104  Identities=15%  Similarity=0.071  Sum_probs=73.7

Q ss_pred             ccceEeeccccccccCCCcchHhhcccccCeeeccCCc-Ccccc-hhhhccccCcEEeccCCCCCCcCC-hhhhcCCCCC
Q 048772          112 LRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLR-IKELP-ETCCELINLETLEINRCTRLKRLP-QGMEKLMNLR  188 (333)
Q Consensus       112 L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp-~~~~~L~~L~  188 (333)
                      ..+++..++..     ...|..+..+++|+.|++.+++ ++.++ ..+.++++|+.|++++ +.++.++ ..|..+++|+
T Consensus        10 ~~~l~c~~~~~-----~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3          10 SSGLRCTRDGA-----LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SSCEECCSSCC-----CTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCC
T ss_pred             CCeEEecCCCC-----ccCcccccCccccCeeecCCCccccccCchhhccccccCcceeec-cccCCccccccccccccc
Confidence            45566666666     5566677777788888886654 77776 4577788888888887 6677774 4477788888


Q ss_pred             eeecccccccccCchhhcCCCCCCccceEEeCCC
Q 048772          189 HLIIMNHVYLEYMPRGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       189 ~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~  222 (333)
                      +|++++|. +..+|.++-....|++|++.++...
T Consensus        84 ~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSC-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeccCCC-CcccChhhhccccccccccCCCccc
Confidence            88888887 6777776554556777777666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.95  E-value=3e-10  Score=99.79  Aligned_cols=95  Identities=24%  Similarity=0.233  Sum_probs=67.9

Q ss_pred             ccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCCe
Q 048772          110 TCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLRH  189 (333)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~~  189 (333)
                      .++++|+++++++     ..+|+.   +++|++|++++|.++++|..+   .+|+.|++++ +.++.++.-   .++|++
T Consensus        38 ~~l~~LdLs~~~L-----~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~-n~l~~l~~l---p~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLGL-----SSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDN-NNLKALSDL---PPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSCC-----SCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCS-SCCSCCCSC---CTTCCE
T ss_pred             cCCCEEEeCCCCC-----CCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhh-cccchhhhh---cccccc
Confidence            4678888888887     667753   467888888888888888654   4677777777 556665531   135888


Q ss_pred             eecccccccccCchhhcCCCCCCccceEEeCC
Q 048772          190 LIIMNHVYLEYMPRGIERLTGLRTLSEFVVGR  221 (333)
Q Consensus       190 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~  221 (333)
                      |++++|. +..+|. ++.+++|++|++.++..
T Consensus       103 L~L~~n~-l~~lp~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         103 LGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             EECCSSC-CSSCCC-CTTCTTCCEEECCSSCC
T ss_pred             ccccccc-cccccc-hhhhccceeeccccccc
Confidence            8888887 677774 57788888888765543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=9.7e-10  Score=91.74  Aligned_cols=103  Identities=18%  Similarity=0.246  Sum_probs=65.5

Q ss_pred             cceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCee
Q 048772          113 RALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHL  190 (333)
Q Consensus       113 ~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L  190 (333)
                      ++++.++..+     ..+|..+.  +.+++|++++|.++.+|. .+.++++|++|++++|.....+|. .+.++++++++
T Consensus        11 ~~i~c~~~~l-----~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l   83 (242)
T d1xwdc1          11 RVFLCQESKV-----TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   83 (242)
T ss_dssp             SEEEEESCSC-----SSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred             CEEEEeCCCC-----CCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccc
Confidence            5666666665     55665442  367777887777777774 467777788888777433333433 46667777777


Q ss_pred             ecccccccccCc-hhhcCCCCCCccceEEeCCC
Q 048772          191 IIMNHVYLEYMP-RGIERLTGLRTLSEFVVGRT  222 (333)
Q Consensus       191 ~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~  222 (333)
                      .+..+..+..++ ..+.++++|++|++.++...
T Consensus        84 ~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          84 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             EEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccccccchhhhc
Confidence            776544454444 33677777777777766544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.1e-09  Score=81.87  Aligned_cols=89  Identities=15%  Similarity=0.160  Sum_probs=75.7

Q ss_pred             hhhHhhhcccccceEeeccc-cccccCCCcc-hHhhcccccCeeeccCCcCcccc-hhhhccccCcEEeccCCCCCCcCC
Q 048772          102 LEDVFKQFTCLRALRICGEN-VWEIGNSKIP-KAMKNLIHLRFLKLSWLRIKELP-ETCCELINLETLEINRCTRLKRLP  178 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~-~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp  178 (333)
                      .+..+..+++|+.|++.++. +     ..++ ..|..+++|+.|++++|.++.++ ..+..+++|++|+|++ +.++.+|
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l-----~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~   96 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHL-----QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLS   96 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSC-----CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCC
T ss_pred             CcccccCccccCeeecCCCccc-----cccCchhhccccccCcceeeccccCCcccccccccccccceeccC-CCCcccC
Confidence            34456678899999998765 6     5555 45888999999999999999996 6689999999999999 8899999


Q ss_pred             hhhhcCCCCCeeeccccc
Q 048772          179 QGMEKLMNLRHLIIMNHV  196 (333)
Q Consensus       179 ~~~~~L~~L~~L~l~~~~  196 (333)
                      .++....+|++|++++|+
T Consensus        97 ~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          97 WKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             STTTCSCCCCEEECCSSC
T ss_pred             hhhhccccccccccCCCc
Confidence            887777789999999987

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.75  E-value=1.8e-09  Score=95.03  Aligned_cols=203  Identities=13%  Similarity=0.075  Sum_probs=124.8

Q ss_pred             hhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-----cch---------hhhccccCcEEec
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-----LPE---------TCCELINLETLEI  168 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~---------~i~~L~~L~~L~l  168 (333)
                      ...+..+++|+.|++++|.+-..+...+...+...++|+.|++++|.+..     +..         .....+.|+.+++
T Consensus        86 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l  165 (344)
T d2ca6a1          86 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  165 (344)
T ss_dssp             HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             HHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeec
Confidence            34456678899999999876321112345556678899999999887541     111         1234567889999


Q ss_pred             cCCCCCC-----cCChhhhcCCCCCeeeccccccccc------CchhhcCCCCCCccceEEeCCCCCcccCcccchhhhc
Q 048772          169 NRCTRLK-----RLPQGMEKLMNLRHLIIMNHVYLEY------MPRGIERLTGLRTLSEFVVGRTGGEHASKVCKLEALK  237 (333)
Q Consensus       169 ~~~~~~~-----~lp~~~~~L~~L~~L~l~~~~~l~~------~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~L~  237 (333)
                      ++ +.+.     .+...+...++|+.|++++|. +..      +...+..+++|++|++..+.....   ........+.
T Consensus       166 ~~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~---g~~~L~~~l~  240 (344)
T d2ca6a1         166 GR-NRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL---GSSALAIALK  240 (344)
T ss_dssp             CS-SCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH---HHHHHHHHGG
T ss_pred             cc-ccccccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhccccccccccccc---cccccccccc
Confidence            88 4443     234446678899999999987 332      223467788999998876654320   0011234456


Q ss_pred             CcccccceeEEcccCCCCCchhhhhhcCcc--cCCCCceEEEeccCCCCCCCccchHHHHHHhhhcc-CCCCCCCceeeE
Q 048772          238 GMNHLRGLLKIRMLGDLANVDEAKHVDLKE--KKNLDRLELWFDNVGMPDENEENDEAITKIAKSVR-VCLLWDNCHPLK  314 (333)
Q Consensus       238 ~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~L~~L~  314 (333)
                      ..+.|+. |.+.+..-.......+...+..  .+.|++|++++|.     .+   .+-...+...+. .   .++|+.|+
T Consensus       241 ~~~~L~~-L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-----i~---~~~~~~l~~~l~~~---~~~L~~L~  308 (344)
T d2ca6a1         241 SWPNLRE-LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-----IE---LDAVRTLKTVIDEK---MPDLLFLE  308 (344)
T ss_dssp             GCTTCCE-EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-----CB---HHHHHHHHHHHHHH---CTTCCEEE
T ss_pred             ccccchh-hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-----CC---hHHHHHHHHHHHcc---CCCCCEEE
Confidence            7777886 8887643211122233333433  3569999999884     22   222222444443 4   56899999


Q ss_pred             EeeecChh
Q 048772          315 YSRYGIWI  322 (333)
Q Consensus       315 l~~~~~~~  322 (333)
                      ++||.+..
T Consensus       309 l~~N~~~~  316 (344)
T d2ca6a1         309 LNGNRFSE  316 (344)
T ss_dssp             CTTSBSCT
T ss_pred             CCCCcCCC
Confidence            99987754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.67  E-value=2.5e-08  Score=87.04  Aligned_cols=83  Identities=20%  Similarity=0.266  Sum_probs=66.4

Q ss_pred             cccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccchhhhccccCcEEeccCCCCCCcCChhhhcCCCCC
Q 048772          109 FTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPETCCELINLETLEINRCTRLKRLPQGMEKLMNLR  188 (333)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~L~~L~  188 (333)
                      .++|++|++++|++     ..+|..   +.+|+.|++++|.++.++...   +.|++|++++ +.+..+|. ++++++|+
T Consensus        57 ~~~L~~L~Ls~N~l-----~~lp~~---~~~L~~L~l~~n~l~~l~~lp---~~L~~L~L~~-n~l~~lp~-~~~l~~L~  123 (353)
T d1jl5a_          57 PPHLESLVASCNSL-----TELPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSN-NQLEKLPE-LQNSSFLK  123 (353)
T ss_dssp             CTTCSEEECCSSCC-----SSCCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCS-SCCSSCCC-CTTCTTCC
T ss_pred             CCCCCEEECCCCCC-----cccccc---hhhhhhhhhhhcccchhhhhc---cccccccccc-cccccccc-hhhhccce
Confidence            46899999999998     788865   457888999999988776421   4699999998 77899985 68899999


Q ss_pred             eeecccccccccCchhh
Q 048772          189 HLIIMNHVYLEYMPRGI  205 (333)
Q Consensus       189 ~L~l~~~~~l~~~p~~i  205 (333)
                      +|++++|. +...|..+
T Consensus       124 ~L~l~~~~-~~~~~~~~  139 (353)
T d1jl5a_         124 IIDVDNNS-LKKLPDLP  139 (353)
T ss_dssp             EEECCSSC-CSCCCCCC
T ss_pred             eecccccc-cccccccc
Confidence            99999887 55555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.54  E-value=1.2e-08  Score=89.61  Aligned_cols=206  Identities=16%  Similarity=0.045  Sum_probs=119.6

Q ss_pred             hhhHhhhcccccceEeeccccccccC------CCcchHhhcccccCeeeccCCcCcc-----cchhhhccccCcEEeccC
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGN------SKIPKAMKNLIHLRFLKLSWLRIKE-----LPETCCELINLETLEINR  170 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~------~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~  170 (333)
                      +...+...+.|+.++++++..-....      ..+...+...++|+.|++++|.+..     +...+...++|+.|++++
T Consensus        51 l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~  130 (344)
T d2ca6a1          51 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN  130 (344)
T ss_dssp             HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccc
Confidence            44455667888888888765311100      1122334556788899998887653     455566778899999988


Q ss_pred             CCCCCc-----CCh---------hhhcCCCCCeeecccccccc-----cCchhhcCCCCCCccceEEeCCCCCcccCccc
Q 048772          171 CTRLKR-----LPQ---------GMEKLMNLRHLIIMNHVYLE-----YMPRGIERLTGLRTLSEFVVGRTGGEHASKVC  231 (333)
Q Consensus       171 ~~~~~~-----lp~---------~~~~L~~L~~L~l~~~~~l~-----~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~  231 (333)
                      |. +..     +..         .....+.|+.+.+++|. +.     .+...+...+.|++|++..+.....+  ....
T Consensus       131 n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g--~~~~  206 (344)
T d2ca6a1         131 NG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG--IEHL  206 (344)
T ss_dssp             SC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH--HHHH
T ss_pred             cc-ccccccccccccccccccccccccCcccceeeccccc-ccccccccccchhhhhhhhcccccccccccccc--cccc
Confidence            43 321     000         11345678888888765 22     23344667788888888766544300  0000


Q ss_pred             chhhhcCcccccceeEEcccCCCCCchhhhhhcCcccCCCCceEEEeccCCCCCCCccchHHHHHHhhhccCCCCCCCce
Q 048772          232 KLEALKGMNHLRGLLKIRMLGDLANVDEAKHVDLKEKKNLDRLELWFDNVGMPDENEENDEAITKIAKSVRVCLLWDNCH  311 (333)
Q Consensus       232 ~~~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~  311 (333)
                      ....+...+.|+. |++.+..-.......+...+...++|++|+|++|.+     +   ......+.+.+... ..+.|+
T Consensus       207 l~~~l~~~~~L~~-L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i-----~---~~g~~~l~~~l~~~-~~~~L~  276 (344)
T d2ca6a1         207 LLEGLAYCQELKV-LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL-----S---ARGAAAVVDAFSKL-ENIGLQ  276 (344)
T ss_dssp             HHTTGGGCTTCCE-EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC-----C---HHHHHHHHHHHHTC-SSCCCC
T ss_pred             hhhhhcchhhhcc-cccccccccccccccccccccccccchhhhhhcCcc-----C---chhhHHHHHHhhhc-cCCCCC
Confidence            1223556677776 777653211112234556677889999999987742     2   11122244444320 046799


Q ss_pred             eeEEeeecCh
Q 048772          312 PLKYSRYGIW  321 (333)
Q Consensus       312 ~L~l~~~~~~  321 (333)
                      +|++++|.+.
T Consensus       277 ~L~ls~N~i~  286 (344)
T d2ca6a1         277 TLRLQYNEIE  286 (344)
T ss_dssp             EEECCSSCCB
T ss_pred             EEECCCCcCC
Confidence            9999988764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.8e-07  Score=72.81  Aligned_cols=83  Identities=23%  Similarity=0.187  Sum_probs=45.6

Q ss_pred             hcccccCeeeccCCcCccc---chhhhccccCcEEeccCCCCCCcCCh-hhhcCCCCCeeecccccccccCc-------h
Q 048772          135 KNLIHLRFLKLSWLRIKEL---PETCCELINLETLEINRCTRLKRLPQ-GMEKLMNLRHLIIMNHVYLEYMP-------R  203 (333)
Q Consensus       135 ~~l~~L~~L~l~~~~i~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~L~~L~~L~l~~~~~l~~~p-------~  203 (333)
                      ..+++|++|++++|.++.+   +..+..+++|++|++++ +.++.++. ...+..+|+.|++++|+......       .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            4566666666666665543   33455666666666666 55666554 12233456666666665222221       1


Q ss_pred             hhcCCCCCCccceEE
Q 048772          204 GIERLTGLRTLSEFV  218 (333)
Q Consensus       204 ~i~~L~~L~~L~~~~  218 (333)
                      -+..+++|+.|+...
T Consensus       141 i~~~~P~L~~LDg~~  155 (162)
T d1koha1         141 IRERFPKLLRLDGHE  155 (162)
T ss_dssp             HHTTSTTCCEETTEE
T ss_pred             HHHHCCCCCEECcCC
Confidence            145566777766543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.1e-06  Score=68.18  Aligned_cols=88  Identities=18%  Similarity=0.192  Sum_probs=65.9

Q ss_pred             hhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcccch-hhhccccCcEEeccCCCCCCcCCh-
Q 048772          102 LEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKELPE-TCCELINLETLEINRCTRLKRLPQ-  179 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-  179 (333)
                      ++.++..++.|++|++++|++..+  ..++..+..+++|++|++++|.|+.+++ ......+|+.|++++ +.+..... 
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l--~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~-Npl~~~~~~  133 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG-NSLSDTFRD  133 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCC--SGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTT-STTSSSSSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCC--chhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCC-CCcCcCccc
Confidence            455567899999999999998322  2344567889999999999999998875 333445789999999 65654322 


Q ss_pred             -------hhhcCCCCCeeec
Q 048772          180 -------GMEKLMNLRHLII  192 (333)
Q Consensus       180 -------~~~~L~~L~~L~l  192 (333)
                             .+..+++|+.||-
T Consensus       134 ~~~y~~~i~~~~P~L~~LDg  153 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLDG  153 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEETT
T ss_pred             chhHHHHHHHHCCCCCEECc
Confidence                   2567899999974

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=5.1e-06  Score=74.42  Aligned_cols=104  Identities=14%  Similarity=0.185  Sum_probs=72.7

Q ss_pred             HhcCCccchhhhhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-----cchhhh-ccccCcE
Q 048772           92 IKGIPQEKKELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-----LPETCC-ELINLET  165 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~-~L~~L~~  165 (333)
                      +.+.......+...++.++++++|++.+|++.+.+...++..+..+++|+.|++++|.++.     +...+. ...+|++
T Consensus         9 ~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~   88 (460)
T d1z7xw1           9 IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK   88 (460)
T ss_dssp             EESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCE
T ss_pred             eeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCE
Confidence            3333333344566778899999999999987322223455667889999999999998753     222221 2247999


Q ss_pred             EeccCCCCCCc-----CChhhhcCCCCCeeeccccc
Q 048772          166 LEINRCTRLKR-----LPQGMEKLMNLRHLIIMNHV  196 (333)
Q Consensus       166 L~l~~~~~~~~-----lp~~~~~L~~L~~L~l~~~~  196 (333)
                      |++++| .++.     ++..+..+++|++|++++|.
T Consensus        89 L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          89 LSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             EECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             EECCCC-Cccccccccccchhhcccccccccccccc
Confidence            999995 4643     45567788999999999987

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=8e-06  Score=73.09  Aligned_cols=74  Identities=15%  Similarity=0.227  Sum_probs=50.0

Q ss_pred             hhhhHhhhcccccceEeeccccccccCCCcchHhh-cccccCeeeccCCcCcc-----cchhhhccccCcEEeccCCCCC
Q 048772          101 ELEDVFKQFTCLRALRICGENVWEIGNSKIPKAMK-NLIHLRFLKLSWLRIKE-----LPETCCELINLETLEINRCTRL  174 (333)
Q Consensus       101 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~-~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~  174 (333)
                      .+...+..+++|+.|++++|.+.+.+...+...+. ....|+.|++++|.++.     ++..+..+++|++|++++ +.+
T Consensus        46 ~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~-N~i  124 (460)
T d1z7xw1          46 DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD-NLL  124 (460)
T ss_dssp             HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS-SBC
T ss_pred             HHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccc-ccc
Confidence            45566788899999999998872111111222222 13479999999998763     456677889999999998 545


Q ss_pred             C
Q 048772          175 K  175 (333)
Q Consensus       175 ~  175 (333)
                      .
T Consensus       125 ~  125 (460)
T d1z7xw1         125 G  125 (460)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.19  E-value=0.00011  Score=56.78  Aligned_cols=93  Identities=17%  Similarity=0.060  Sum_probs=58.6

Q ss_pred             hhHhhhcccccceEeeccc-cccccCCCcchHhhcccccCeeeccCCcCc-----ccchhhhccccCcEEeccCCCCCCc
Q 048772          103 EDVFKQFTCLRALRICGEN-VWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCTRLKR  176 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~-~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~  176 (333)
                      ..+..+.+.|+.|+++++. +-..+-..+-..+...++|+.|++++|.+.     .+...+..-+.|+.|++++| .+..
T Consensus         8 ~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~   86 (167)
T d1pgva_           8 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTP   86 (167)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCH
T ss_pred             HHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcch
Confidence            3344556889999998753 311000123334566778999999988865     34455666778899999884 4543


Q ss_pred             -----CChhhhcCCCCCeeeccccc
Q 048772          177 -----LPQGMEKLMNLRHLIIMNHV  196 (333)
Q Consensus       177 -----lp~~~~~L~~L~~L~l~~~~  196 (333)
                           +-..+..-++|++|++++|.
T Consensus        87 ~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          87 ELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHHHHHHhCCcCCEEECCCCc
Confidence                 22234555678888887764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.72  E-value=0.0008  Score=51.57  Aligned_cols=92  Identities=10%  Similarity=0.049  Sum_probs=63.8

Q ss_pred             hhHhhhcccccceEeeccccccccCCCcchHhhcccccCeeeccCCcCcc-----cchhhhccccCcEEeccCCCCCCcC
Q 048772          103 EDVFKQFTCLRALRICGENVWEIGNSKIPKAMKNLIHLRFLKLSWLRIKE-----LPETCCELINLETLEINRCTRLKRL  177 (333)
Q Consensus       103 ~~~~~~~~~L~~L~l~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~~l  177 (333)
                      -..+...+.|++|++++|.+-+.....+...+...+.|+.|++++|.++.     +-..+..-+.|++|++++ +....+
T Consensus        37 ~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~-n~~~~~  115 (167)
T d1pgva_          37 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN-QRQSVL  115 (167)
T ss_dssp             HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC-CSSCCC
T ss_pred             HHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCC-CcCCCc
Confidence            33456678899999999987433334555667778899999999999762     344566668899999998 444433


Q ss_pred             --------ChhhhcCCCCCeeecccc
Q 048772          178 --------PQGMEKLMNLRHLIIMNH  195 (333)
Q Consensus       178 --------p~~~~~L~~L~~L~l~~~  195 (333)
                              ...+..-++|+.|+++.+
T Consensus       116 g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         116 GNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cHHHHHHHHHHHHhCCCccEeeCcCC
Confidence                    233445567777777554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.66  E-value=0.00053  Score=52.49  Aligned_cols=114  Identities=16%  Similarity=0.087  Sum_probs=67.0

Q ss_pred             hhhHhhhcccccceEeeccc-cccccCCCcchHhhcccccCeeeccCCcCc-----ccchhhhccccCcEEeccCCCCCC
Q 048772          102 LEDVFKQFTCLRALRICGEN-VWEIGNSKIPKAMKNLIHLRFLKLSWLRIK-----ELPETCCELINLETLEINRCTRLK  175 (333)
Q Consensus       102 ~~~~~~~~~~L~~L~l~~~~-~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~  175 (333)
                      +..+..+.+.|+.|+++++. +-..+-..+-..+...++|+.|++++|.++     .+-..+.....++.+++++|. +.
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~-~~   87 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-IS   87 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc-cc
Confidence            34445566888899888743 311100123344567788999999988865     244456667888888888743 32


Q ss_pred             -----cCChhhhcCCCCCeeeccccc-ccc-----cCchhhcCCCCCCccce
Q 048772          176 -----RLPQGMEKLMNLRHLIIMNHV-YLE-----YMPRGIERLTGLRTLSE  216 (333)
Q Consensus       176 -----~lp~~~~~L~~L~~L~l~~~~-~l~-----~~p~~i~~L~~L~~L~~  216 (333)
                           .+-..+...++|+.+++..+. .++     .+...+.+.++|++|++
T Consensus        88 ~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l  139 (166)
T d1io0a_          88 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY  139 (166)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             chhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeC
Confidence                 233445666777776665332 121     12334555666666665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.27  E-value=0.00013  Score=56.07  Aligned_cols=61  Identities=18%  Similarity=0.142  Sum_probs=34.4

Q ss_pred             hcccccCeeeccCC-cCc-----ccchhhhccccCcEEeccCCCCCCc-----CChhhhcCCCCCeeeccccc
Q 048772          135 KNLIHLRFLKLSWL-RIK-----ELPETCCELINLETLEINRCTRLKR-----LPQGMEKLMNLRHLIIMNHV  196 (333)
Q Consensus       135 ~~l~~L~~L~l~~~-~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~-----lp~~~~~L~~L~~L~l~~~~  196 (333)
                      .+.+.|+.|+++++ .++     .+-..+...++|+.|++++ +.++.     +-..+...++++.+++++|.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~-n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccC-CcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            45577788887763 343     2334455667777777777 33432     22234445566666665554