Citrus Sinensis ID: 048788

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
MCQPPSPPKCNSSIHPNMHAPLITKSPTTDSSLAIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEFEAQRAKELTGDGVVVDDSKDVEQQKLPSKAEIKEDSLYLLDGNNFDNKSSHHDCPV
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHcHHHHccccccHHHHEEEHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHcHHHccccHHHHHEEEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccHHcccccEEEEcccccccccccccccc
mcqppsppkcnssihpnmhaplitkspttdsSLAIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSglamgmepicgqaFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQktwggfsmdCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGyllnpratIASMGILIQTTSLIyifpsslsfsVSTRvgnelganqpkKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLpiiglcelgncpqttgcgvlrgtarpkvganinlgcfyiVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEFEAQRAKEltgdgvvvddskdveqqklpskaeikedslylldgnnfdnksshhdcpv
mcqppsppkcnssihpnMHAPLITKSPTTDSSLAIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEFEAQRAKeltgdgvvvddskdveqqklpskaeikedslylldgnnfdnksshhdcpv
MCQPPSPPKCNSSIHPNMHAPLITKSPTTDSSLAIREAISIAKIALPMILTGLLLYSRSMISVlflgrlgelalaggslavgfaNITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEFEAQRAKELTgdgvvvddskdvEQQKLPSKAEIKEDSLYLLDGNNFDNKSSHHDCPV
********************************LAIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEFEAQRAKELTGDGVV******************************************
*****************************DSSLAIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEFEAQRAK**************************************************
***********SSIHPNMHAPLITKSPTTDSSLAIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEFEAQRAKELTGDGVVVDDSKDVEQQKLPSKAEIKEDSLYLLDGNNFDN*********
************************KSPTTDSSLAIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEFEAQRAKELTGDGV*************PS*******SLYLL*G**************
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MCQPPSPPKCNSSIHPNMHAPLITKSPTTDSSLAIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEFEAQRAKELTGDGVVVDDSKDVEQQKLPSKAEIKEDSLYLLDGNNFDNKSSHHDCPV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query525 2.2.26 [Sep-21-2011]
Q3V050573 Multidrug and toxin extru yes no 0.887 0.813 0.319 3e-63
Q9SIA3476 MATE efflux family protei no no 0.832 0.918 0.322 3e-61
Q8GXM8476 MATE efflux family protei no no 0.853 0.941 0.316 1e-60
Q9SIA5476 MATE efflux family protei no no 0.832 0.918 0.320 4e-60
Q5RFD2570 Multidrug and toxin extru yes no 0.832 0.766 0.327 5e-60
Q5I0E9566 Multidrug and toxin extru no no 0.860 0.798 0.313 7e-60
A4IIS8574 Multidrug and toxin extru yes no 0.851 0.778 0.311 8e-60
A1L1P9590 Multidrug and toxin extru yes no 0.88 0.783 0.310 1e-59
Q8RWF5483 MATE efflux family protei no no 0.832 0.904 0.327 1e-59
Q9LUH3469 MATE efflux family protei no no 0.782 0.876 0.333 3e-59
>sp|Q3V050|S47A2_MOUSE Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1 Back     alignment and function desciption
 Score =  243 bits (619), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 152/476 (31%), Positives = 258/476 (54%), Gaps = 10/476 (2%)

Query: 36  REAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGL 95
           REA ++  +A P+ L  L+++  S++S +F G LG++ L   +LAV   N+TG S+ +GL
Sbjct: 42  REAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGL 101

Query: 96  AMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIAT 155
           A   + +  Q+FG +    +G+ LQ+ IL+L+    P   ++LN + +LL   Q+ D+A 
Sbjct: 102 ASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVAR 161

Query: 156 VAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLG 215
           +AQ Y+   +P L A  L      YL+SQ I +P       + ++++ +N FL+  L+LG
Sbjct: 162 LAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLG 221

Query: 216 IKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCL 275
           + G A +   + F L A L +Y+   +++  TWGG++ +CF+E  +   LAIPS   VC+
Sbjct: 222 VVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVCI 281

Query: 276 EWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPK 335
           EWW +EI   L G L+N    + +  ++ +  S+ Y+ P     + S RVGN LGA    
Sbjct: 282 EWWTFEIGTFLAG-LVNV-TELGAQAVIYELASVAYMVPFGFGVAASVRVGNALGAGNAD 339

Query: 336 KAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNC 395
           +A+ +    L C+ +         A+++ + A +FT DK+II+L S V+PI     L + 
Sbjct: 340 QARCSCTTVLLCAGVCALLVGILLAALKDVVAYIFTNDKDIISLVSQVMPIFAPFHLFDA 399

Query: 396 PQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCV 455
              T  GVLRGT + K+GA +N   +Y  GFP+ V L F       GLW GL+       
Sbjct: 400 LAGTCGGVLRGTGKQKIGAVLNTIGYYGFGFPIGVSLMFAAKLGIIGLWAGLIVCVSFQA 459

Query: 456 VTMLVVLGKTDWEFEAQRAKELTGDGVVVDDSKDVEQQKLPSKAEIKEDSLYLLDG 511
            + L+ + +T+W   A++A+   G    +  +K++    +P+ A++      ++DG
Sbjct: 460 FSYLIYILRTNWSRVAEQAQVRAG----LKSTKEL----IPTPADLPILEREVMDG 507
Solute transporter for tetraethylammonium (TEA), cimetidine, choline, procainamide, cimetidine, quinidine, guanidine, N-methylnicotinamide (NMN). Responsible for the secretion of cationic drugs across the brush border membranes.
Mus musculus (taxid: 10090)
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1 Back     alignment and function description
>sp|Q5I0E9|S47A1_RAT Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1 Back     alignment and function description
>sp|A4IIS8|S47A1_XENTR Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1 Back     alignment and function description
>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
225455459534 PREDICTED: multidrug and toxin extrusion 0.963 0.947 0.781 0.0
255539553553 multidrug resistance pump, putative [Ric 0.954 0.905 0.796 0.0
224136866525 predicted protein [Populus trichocarpa] 0.965 0.965 0.788 0.0
224120154460 predicted protein [Populus trichocarpa] 0.872 0.995 0.864 0.0
356534161530 PREDICTED: MATE efflux family protein 9- 0.984 0.975 0.748 0.0
356574471550 PREDICTED: multidrug and toxin extrusion 0.916 0.874 0.787 0.0
356529294 739 PREDICTED: multidrug and toxin extrusion 0.912 0.648 0.779 0.0
357444071540 Multidrug and toxin extrusion protein [M 0.952 0.925 0.735 0.0
356561709531 PREDICTED: multidrug and toxin extrusion 0.918 0.907 0.767 0.0
255537279539 multidrug resistance pump, putative [Ric 0.914 0.890 0.751 0.0
>gi|225455459|ref|XP_002274808.1| PREDICTED: multidrug and toxin extrusion protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/532 (78%), Positives = 453/532 (85%), Gaps = 26/532 (4%)

Query: 1   MCQPPSPP---KCNSS---------IHPNMHAPLITKSPTTDS--------SLAIREAIS 40
           MCQPPS P   KCNS+           P+M  PLI KSPT++         SLAIREA S
Sbjct: 1   MCQPPSSPLSPKCNSNHGYPQKMKEPEPHMGTPLIPKSPTSNQQQYTQTHLSLAIREANS 60

Query: 41  IAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGME 100
           IAKIALPMILTGLLLYSRSMIS+LFLGRLGELALAGGSLAVGFANITGYSILSGLAMGME
Sbjct: 61  IAKIALPMILTGLLLYSRSMISMLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGME 120

Query: 101 PICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSY 160
           PICGQAFGA+RH LLGL+LQ+T+LLL+FTS+PI+ LWLNMK ILLFCGQ+EDIA  AQSY
Sbjct: 121 PICGQAFGAKRHALLGLSLQRTVLLLLFTSLPIAFLWLNMKRILLFCGQDEDIAAEAQSY 180

Query: 161 LFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLGIKGVA 220
           L YSLPDL AQSLLHPLRIYLR+Q+ITLPLTFCAT+SI +HIPINY LV+ LNLGIKGVA
Sbjct: 181 LLYSLPDLFAQSLLHPLRIYLRTQSITLPLTFCATMSIFMHIPINYLLVSHLNLGIKGVA 240

Query: 221 LSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLEWWWY 280
           LSGVWTNFNLV SLIIY++IS VY+KTWGG SM+C +  K LLNLA+PSCISVCLEWWWY
Sbjct: 241 LSGVWTNFNLVGSLIIYLLISGVYKKTWGGLSMECLRGWKPLLNLAVPSCISVCLEWWWY 300

Query: 281 EIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLA 340
           EIMILLCG LLNPRAT+ASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQP KAK A
Sbjct: 301 EIMILLCGLLLNPRATVASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPNKAKCA 360

Query: 341 AIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTG 400
           AI+GL+CSF LGFSAL FA  VR +WASMFTQD EIIALTS+VLPIIGLCELGNCPQTTG
Sbjct: 361 AIIGLACSFTLGFSALLFAVMVRNVWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTG 420

Query: 401 CGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVVTMLV 460
           CGVLRGTARP+VGANINLGCFY+VG PVAV L FY GFDFEGLWLGLLAAQ SCVVTMLV
Sbjct: 421 CGVLRGTARPRVGANINLGCFYLVGTPVAVGLGFYAGFDFEGLWLGLLAAQASCVVTMLV 480

Query: 461 VLGKTDWEFEAQRAKELTGDGVVVDDSKDVEQQKLPSKAEIKEDSLYLLDGN 512
           VL +TDWE EAQRAK+LT   +V D+  D     L  K EIK +S Y L G+
Sbjct: 481 VLNRTDWEVEAQRAKQLTSGPLVPDEEDD-----LLIKPEIKVNS-YSLAGD 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255539553|ref|XP_002510841.1| multidrug resistance pump, putative [Ricinus communis] gi|223549956|gb|EEF51443.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224136866|ref|XP_002322435.1| predicted protein [Populus trichocarpa] gi|222869431|gb|EEF06562.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224120154|ref|XP_002318258.1| predicted protein [Populus trichocarpa] gi|222858931|gb|EEE96478.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356534161|ref|XP_003535626.1| PREDICTED: MATE efflux family protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|356574471|ref|XP_003555370.1| PREDICTED: multidrug and toxin extrusion protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356529294|ref|XP_003533230.1| PREDICTED: multidrug and toxin extrusion protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|357444071|ref|XP_003592313.1| Multidrug and toxin extrusion protein [Medicago truncatula] gi|355481361|gb|AES62564.1| Multidrug and toxin extrusion protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356561709|ref|XP_003549122.1| PREDICTED: multidrug and toxin extrusion protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|255537279|ref|XP_002509706.1| multidrug resistance pump, putative [Ricinus communis] gi|223549605|gb|EEF51093.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
TAIR|locus:2127193502 AT4G23030 "AT4G23030" [Arabido 0.859 0.898 0.690 1.1e-167
TAIR|locus:2016615532 ZF14 "AT1G58340" [Arabidopsis 0.845 0.834 0.569 3.5e-139
TAIR|locus:2173098505 AT5G52050 [Arabidopsis thalian 0.864 0.899 0.576 1.5e-138
TAIR|locus:2119941532 ADS1 "AT4G29140" [Arabidopsis 0.847 0.836 0.543 2.2e-130
TAIR|locus:2183169508 AT5G19700 "AT5G19700" [Arabido 0.841 0.870 0.531 5.5e-125
TAIR|locus:2013006510 AT1G71870 "AT1G71870" [Arabido 0.413 0.425 0.568 2.6e-113
TAIR|locus:2064138486 AT2G38510 "AT2G38510" [Arabido 0.841 0.909 0.478 5.2e-113
TAIR|locus:2155179502 AT5G49130 "AT5G49130" [Arabido 0.843 0.882 0.455 2e-102
TAIR|locus:2132619491 AT4G22790 "AT4G22790" [Arabido 0.876 0.936 0.364 4.6e-73
TAIR|locus:2156737486 AT5G52450 "AT5G52450" [Arabido 0.807 0.872 0.337 3.5e-68
TAIR|locus:2127193 AT4G23030 "AT4G23030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1631 (579.2 bits), Expect = 1.1e-167, P = 1.1e-167
 Identities = 313/453 (69%), Positives = 370/453 (81%)

Query:    26 SPTTDSSLAIREAISIAKIALPMILTGLLLYSRSMISVXXXXXXXXXXXXXXXXXXXX-X 84
             +PT  SS +I+EA SIAKI+LP+ILTGLLLYSRSMIS+                      
Sbjct:    22 NPTHLSS-SIQEAKSIAKISLPLILTGLLLYSRSMISMLFLGRLNDLSALSGGSLALGFA 80

Query:    85 NITGYSILSGLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNIL 144
             NITGYS+LSGL++GMEPIC QAFGA+R  LLGLALQ+T LLL+  S+PIS+LWLN+K IL
Sbjct:    81 NITGYSLLSGLSIGMEPICVQAFGAKRFKLLGLALQRTTLLLLLCSLPISILWLNIKKIL 140

Query:   145 LFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPI 204
             LF GQ+E+I+  A+ ++ +SLPDL+ QS LHP+RIYLRSQ+ITLPLT+ A  ++LLHIPI
Sbjct:   141 LFFGQDEEISNQAEIFILFSLPDLILQSFLHPIRIYLRSQSITLPLTYSAFFAVLLHIPI 200

Query:   205 NYFLVTQLNLGIKGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLN 264
             NY LV+ L LG+KGVAL  +WTN NL+  LIIYI+ S VYQKTWGGFSMDCFK  ++L+ 
Sbjct:   201 NYLLVSSLGLGLKGVALGAIWTNVNLLGFLIIYIVFSGVYQKTWGGFSMDCFKGWRSLMK 260

Query:   265 LAIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTR 324
             LAIPSC+SVCLEWWWYEIMILLCG LLNP+AT+ASMGILIQTT+LIYIFPSSLS SVSTR
Sbjct:   261 LAIPSCVSVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTALIYIFPSSLSISVSTR 320

Query:   325 VGNELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVL 384
             VGNELGANQP KA++AA  GLS S  LG  A+FFA  VR  WA +FT ++EI+ LTS+VL
Sbjct:   321 VGNELGANQPDKARIAARTGLSLSLGLGLLAMFFALMVRNCWARLFTDEEEIVKLTSMVL 380

Query:   385 PIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLW 444
             PIIGLCELGNCPQTT CGVLRG+ARPK+GANINL CFY VG PVAVWL+F+ GFDF+GLW
Sbjct:   381 PIIGLCELGNCPQTTLCGVLRGSARPKLGANINLCCFYFVGMPVAVWLSFFSGFDFKGLW 440

Query:   445 LGLLAAQGSCVVTMLVVLGKTDWEFEAQRAKEL 477
             LGL AAQGSC+++MLVVL +TDWE E  RAKEL
Sbjct:   441 LGLFAAQGSCLISMLVVLARTDWEVEVHRAKEL 473
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2016615 ZF14 "AT1G58340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173098 AT5G52050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119941 ADS1 "AT4G29140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183169 AT5G19700 "AT5G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013006 AT1G71870 "AT1G71870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064138 AT2G38510 "AT2G38510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155179 AT5G49130 "AT5G49130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132619 AT4G22790 "AT4G22790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3V050S47A2_MOUSENo assigned EC number0.31930.88760.8132yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-179
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 4e-61
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-58
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 1e-53
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-39
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 8e-35
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 6e-33
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 3e-32
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-29
pfam01554161 pfam01554, MatE, MatE 5e-29
pfam01554161 pfam01554, MatE, MatE 4e-28
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-27
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 1e-20
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 5e-20
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 1e-18
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 9e-16
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 4e-13
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 3e-11
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 5e-10
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 1e-07
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 2e-07
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 1e-06
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 1e-05
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 2e-05
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-04
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 5e-04
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 0.002
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  510 bits (1316), Expect = e-179
 Identities = 197/437 (45%), Positives = 293/437 (67%), Gaps = 1/437 (0%)

Query: 37  EAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLA 96
           EA  + ++A P++LT LL YS S++SV+F+G LG+L LA  SLA  FAN+TG+SIL GLA
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 97  MGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATV 156
             ++ +CGQAFGA+ + L+G+ LQ+ +++L+   +PISLLWLN + ILL  GQ+ +IA +
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 157 AQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQLNLGI 216
           A  YL + +P L A +L  PL+ YL++Q I LPL + + +++LL+I +NY LV  L LG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 217 KGVALSGVWTNFNLVASLIIYIIISKVYQKTWGGFSMDCFKECKTLLNLAIPSCISVCLE 276
            G AL+   + + +V  L++YI  SK ++ TWGGFS + F+     L LAIPS + +CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 277 WWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKK 336
           WW +EI++LL G L      +A+  I + TTSL+Y+ P  +S + S RVGNELGA  PK+
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 337 AKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCP 396
           AKLAAIV L  S ++G         +R +WA +FT D+E+IAL + +LPI+ L ++ +  
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 397 QTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFYMGFDFEGLWLGLLAAQGSCVV 456
           Q    GVLRG  R K+GA +NL  +Y++G PV + LAF +G   +GLW+GL+A      V
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 457 TMLVVLGKTDWEFEAQR 473
            +L+++ +TDW+ EA++
Sbjct: 420 ILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 525
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.98
PRK10459492 colanic acid exporter; Provisional 99.97
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
COG2244480 RfbX Membrane protein involved in the export of O- 99.95
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.9
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.9
PRK10189 478 MATE family multidrug exporter; Provisional 99.89
PRK00187 464 multidrug efflux protein NorA; Provisional 99.89
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.89
PRK01766 456 multidrug efflux protein; Reviewed 99.87
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.8
TIGR01695502 mviN integral membrane protein MviN. This model re 99.78
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.77
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.75
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.72
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.69
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.68
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.65
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.64
PRK10459492 colanic acid exporter; Provisional 99.63
PRK15099416 O-antigen translocase; Provisional 99.6
COG2244480 RfbX Membrane protein involved in the export of O- 99.54
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.34
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.3
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.1
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.02
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.42
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.24
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.16
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.0
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.95
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.89
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.68
COG4267467 Predicted membrane protein [Function unknown] 96.98
COG4267 467 Predicted membrane protein [Function unknown] 83.42
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-57  Score=454.02  Aligned_cols=437  Identities=26%  Similarity=0.358  Sum_probs=415.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCChh
Q 048788           34 AIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQRHN  113 (525)
Q Consensus        34 ~~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~  113 (525)
                      .++..|+++++++|.++++++..+++++|+.++||+|++++++.+++.++..++ ..+..|++.|.++++||++|++|++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            567999999999999999999999999999999999999999999999999998 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 048788          114 LLGLALQKTILLLMFTSIPISLL-WLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTF  192 (525)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  192 (525)
                      ++++..++++.+.++++++..++ +.+.++++.+++.++++.+.+.+|+++..++.|+..+...+.+++|+.||++.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999887766 99999999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-cC-CCcchhHHHHHHHHHHHHHHHHHHHHhhhh-chhccCCCChhhHHHHHHHHHhHhhh
Q 048788          193 CATLSILLHIPINYFLVTQ-LN-LGIKGVALSGVWTNFNLVASLIIYIIISKV-YQKTWGGFSMDCFKECKTLLNLAIPS  269 (525)
Q Consensus       193 ~~~~~~~~~i~~~~~li~~-~~-~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~il~~~~p~  269 (525)
                      .+++++++|+++|++|+++ ++ +|+.|+++||++++.+..++.++++.++++ ......+..+++++.+|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 57 999999999999999999999999988775 22222333377889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 048788          270 CISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGLSCSF  349 (525)
Q Consensus       270 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~  349 (525)
                      .++++.+...+...+.+++++|+  +++|+|+++.++.++.+++..|++++.++++++++|+||++++++..+.+.++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999976  9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHH
Q 048788          350 MLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVA  429 (525)
Q Consensus       350 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~  429 (525)
                      .++...+++++++++++..+|++|+|+.+.+..++++..+..++++.+....+.+|+.||+|.++..++++.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 048788          430 VWLAFYMGFDFEGLWLGLLAAQGSCVVTMLVVLGKTDWEFEAQRA  474 (525)
Q Consensus       430 ~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (525)
                      +++.... +|..|+|++...++.+..+...+++++.+|++...+.
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA  452 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            9998876 8999999999999999999999999999888776544

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 1e-20
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 2e-11
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 159/377 (42%), Gaps = 26/377 (6%)
Query: 94  GLAMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDI 153
           GL M + P+  Q  GA R + +   + + ++L +  S+PI  +    + I+ F    E +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125
Query: 154 ATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQL- 212
           AT    Y+   +  + A  L   LR +    ++T P      + +LL+IP+N+  V    
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 185
Query: 213 ---NLGIKGVALSGVWTNFNLVASLIIYIIISK--VYQKTWGGFSMDCFKECKTLLNLAI 267
               LG  G  ++     + ++  L+ YI+ SK   + K +  F     KE   L  L  
Sbjct: 186 GAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245
Query: 268 PSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGN 327
           P   ++  E   + ++ LL   L      +A+  + +  +SL+++FP S+  +VS RVG+
Sbjct: 246 PVAAALFFEVTLFAVVALLVAPL--GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGH 303
Query: 328 ELGANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPII 387
           +LG    K A +AA VGL                 R+  A ++T+++ ++AL   +L   
Sbjct: 304 KLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA 363
Query: 388 GLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPV------------------A 429
            + +  +  Q    G LRG        +     ++++G P                    
Sbjct: 364 AIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKG 423
Query: 430 VWLAFYMGFDFEGLWLG 446
            WL F +G     L LG
Sbjct: 424 FWLGFIIGLSAAALMLG 440
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 3e-90
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  283 bits (725), Expect = 3e-90
 Identities = 102/453 (22%), Positives = 190/453 (41%), Gaps = 17/453 (3%)

Query: 36  REAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGL 95
           +EA ++ K+A P+++  +       +  +  G +  + +A  S+A     +       GL
Sbjct: 9   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPSILFGVGL 67

Query: 96  AMGMEPICGQAFGAQRHNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIAT 155
            M + P+  Q  GA R + +   + + ++L +  S+PI  +    + I+ F    E +AT
Sbjct: 68  LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127

Query: 156 VAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLTFCATLSILLHIPINYFLVTQL--- 212
               Y+   +  + A  L   LR +    ++T P      + +LL+IP+N+  V      
Sbjct: 128 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 187

Query: 213 -NLGIKGVALSGVWTNFNLVASLIIYIIISKVYQ--KTWGGFSMDCFKECKTLLNLAIPS 269
             LG  G  ++     + ++  L+ YI+ SK     K +  F     KE   L  L  P 
Sbjct: 188 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 247

Query: 270 CISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNEL 329
             ++  E   + ++ LL   L      +A+  + +  +SL+++FP S+  +VS RVG++L
Sbjct: 248 AAALFFEVTLFAVVALLVAPL--GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 305

Query: 330 GANQPKKAKLAAIVGLSCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGL 389
           G    K A +AA VGL                 R+  A ++T+++ ++AL   +L    +
Sbjct: 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 365

Query: 390 CELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVGFPVAVWLAFY-----MGFDFEGLW 444
            +  +  Q    G LRG        +     ++++G P    L             +G W
Sbjct: 366 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 425

Query: 445 LGL---LAAQGSCVVTMLVVLGKTDWEFEAQRA 474
           LG    L+A    +   L  L K   + +   A
Sbjct: 426 LGFIIGLSAAALMLGQRLYWLQKQSDDVQLHLA 458
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.78
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 93.15
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 92.04
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 91.27
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=8.5e-49  Score=400.79  Aligned_cols=432  Identities=22%  Similarity=0.370  Sum_probs=399.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCC
Q 048788           32 SLAIREAISIAKIALPMILTGLLLYSRSMISVLFLGRLGELALAGGSLAVGFANITGYSILSGLAMGMEPICGQAFGAQR  111 (525)
Q Consensus        32 ~~~~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~  111 (525)
                      ...++..|++++.++|.+++++...+++++|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.+++++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            44578899999999999999999999999999999999999999999999998877 78889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhHHH
Q 048788          112 HNLLGLALQKTILLLMFTSIPISLLWLNMKNILLFCGQNEDIATVAQSYLFYSLPDLLAQSLLHPLRIYLRSQAITLPLT  191 (525)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  191 (525)
                      +++.++.+++++.+..+.+++..+++.+.++++.+++.+++..+.+..|++++.++.++..+.....+++++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999999987777788888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-c---CCCcchhHHHHHHHHHHHHHHHHHHHHhhhhchh-c-cCCCChhhHHHHHHHHHh
Q 048788          192 FCATLSILLHIPINYFLVTQ-L---NLGIKGVALSGVWTNFNLVASLIIYIIISKVYQK-T-WGGFSMDCFKECKTLLNL  265 (525)
Q Consensus       192 ~~~~~~~~~~i~~~~~li~~-~---~~gi~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~k~il~~  265 (525)
                      ..++++.++|+++++++++. +   ++|+.|+++++++++.+..++..++.+++++.+. + +.++.+.+++.+|+++++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999975 3   6999999999999999999988887766543321 1 223335677889999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 048788          266 AIPSCISVCLEWWWYEIMILLCGYLLNPRATIASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPKKAKLAAIVGL  345 (525)
Q Consensus       266 ~~p~~l~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~  345 (525)
                      |+|.+++++...+...+++.+++++++  +++|+|+++.++.++...+..+++++..|.+++++|++|++++++..+++.
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~--~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~  321 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL  321 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999999999999965  999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhHhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhHHHHHHHHHHHH
Q 048788          346 SCSFMLGFSALFFAASVRKIWASMFTQDKEIIALTSIVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYIVG  425 (525)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  425 (525)
                      ++...++++.++++.++++++..+|++|+++.+.+..++++++++.++.+++....+++++.||++.+++.++++.|+++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  401 (460)
T 3mkt_A          322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG  401 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988889999999999999999999999999999999999999999999998999


Q ss_pred             HHHHHHHHHH----hC-CCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 048788          426 FPVAVWLAFY----MG-FDFEGLWLGLLAAQGSCVVTMLVVLGKTD  466 (525)
Q Consensus       426 i~~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~  466 (525)
                      +|+.+++...    ++ +|..|+|+|+.+++.+..++..++++|..
T Consensus       402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887    66 89999999999999998887777666644
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 80.98
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=80.98  E-value=19  Score=32.21  Aligned_cols=26  Identities=19%  Similarity=0.370  Sum_probs=15.2

Q ss_pred             hCCCchHHHHHHHHHHHHHHHHHHHH
Q 048788          436 MGFDFEGLWLGLLAAQGSCVVTMLVV  461 (525)
Q Consensus       436 ~~~g~~G~~~a~~~~~~~~~~~~~~~  461 (525)
                      ...|..+..+......++..++....
T Consensus       405 ~~~g~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         405 DFFGWDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            34677776666666555555544444