Citrus Sinensis ID: 048797

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
MLNALGVSGKSVSLTVALRNENGLAEALGSNFDYASQAEIKGKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKHWRRGRADCHFGAGPFPRDSAFTLATRNCRESSACSNRTCTGMIYNSTVFGPTLDAYDKLFTGHPELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCLLI
cccccccccccEEEccccccHHHHHHHHccccccHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccccccccccccEEEEEEcccccccccccccccEEEEEcccccccccccEEcccccccccccEEEEcccccccccccccccccccccccEEEEc
ccHHcccccccEEEEccccHHHHHHHHcccccccHHHHHHHHHHccccEEEEEEEEccccccEccccccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccHHHcHHHccccccEEEEccccHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccHHHHHHHcccccccccEEEEcccccEEEcccccccccccccEEEEEEc
mlnalgvsgkSVSLTVALRNENGLAealgsnfdyasqaeikgkwhprCDLLIRIKALddckavcpqaqdskcGANLAEIGALLEAALASQLGVVGISfhigsgatdfgafdGAISAAKAVFDAasarhgltdQMRAKHwrrgradchfgagpfprdsaftlatrncressacsnrtctgmiynstvfgptldaydklftghpelqvgnwlVFSQIGACtavygsgfkgfntadiptclli
mlnalgvsgksVSLTVALRNENGLAEALGSNFDYASQAEIKGKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKHWRRGRADCHFGAGPFPRDSAFTLATRNCRessacsnrtctgmIYNSTVFGPTLDAYDKLFTGHPELQVGNWLVFSQIGACTAVYGSGfkgfntadiptclli
MLNALGVSGKSVSLTVALRNENGLAEALGSNFDYASQAEIKGKWHPRCDLLIRIKALDDCKAVCPQAQDSKCganlaeigalleaalaSQLGVVGISFHIGSGATDFGAFDGaisaakavfdaasaRHGLTDQMRAKHWRRGRADCHFGAGPFPRDSAFTLATRNCRESSACSNRTCTGMIYNSTVFGPTLDAYDKLFTGHPELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCLLI
*************LTVALRNENGLAEALGSNFDYASQAEIKGKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKHWRRGRADCHFGAGPFPRDSAFTLATRNCRESSACSNRTCTGMIYNSTVFGPTLDAYDKLFTGHPELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCLL*
MLNALGVSGKSVSLTVALRNENGLAEALGSNFDYASQAEIKGKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKHWRRGRADCHFGAGPFPRDSAFTLATRNCRESSACSNRTCTGMIYNSTVFGPTLDAYDKLFTGHPELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCLLI
MLNALGVSGKSVSLTVALRNENGLAEALGSNFDYASQAEIKGKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKHWRRGRADCHFGAGPFPRDSAFTLATRNCRESSACSNRTCTGMIYNSTVFGPTLDAYDKLFTGHPELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCLLI
MLNALGVSGKSVSLTVALRNENGLAEALGSNFDYASQAEIKGKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKHWRRGRADCHFGAGPFPRDSAFTLATRNCRESSACSNRTCTGMIYNSTVFGPTLDAYDKLFTGHPELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCLLI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLNALGVSGKSVSLTVALRNENGLAEALGSNFDYASQAEIKGKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKHWRRGRADCHFGAGPFPRDSAFTLATRNCRESSACSNRTCTGMIYNSTVFGPTLDAYDKLFTGHPELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCLLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query240 2.2.26 [Sep-21-2011]
Q8S3N2435 Ornithine decarboxylase O N/A no 0.966 0.533 0.348 1e-28
P50134431 Ornithine decarboxylase O N/A no 0.966 0.538 0.348 5e-28
O22616431 Ornithine decarboxylase O N/A no 0.883 0.491 0.365 1e-26
Q9UQW9432 Ornithine decarboxylase O yes no 0.808 0.449 0.284 7e-13
P08432466 Ornithine decarboxylase O yes no 0.420 0.216 0.375 8e-12
P00860 461 Ornithine decarboxylase O yes no 0.379 0.197 0.425 7e-10
P27118 450 Ornithine decarboxylase ( yes no 0.370 0.197 0.445 8e-10
P27117 461 Ornithine decarboxylase O yes no 0.366 0.190 0.439 1e-09
P11926 461 Ornithine decarboxylase O yes no 0.366 0.190 0.450 1e-09
P27119 461 Ornithine decarboxylase O N/A no 0.370 0.193 0.423 2e-09
>sp|Q8S3N2|DCOR_CAPAN Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1 Back     alignment and function desciption
 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 144/304 (47%), Gaps = 72/304 (23%)

Query: 4   ALGVSGKSVSLTVALRNENGL--AEALGSNFD-YASQAEIKG--KWHPRCDLLIRIKALD 58
           +LG+S + +      + E+ +  AE +G N   Y S+ E+    K HP+C+LL+RIK ++
Sbjct: 129 SLGISPERIVFANPCKPESDIIFAEKVGVNLTTYDSEDEVYKIKKHHPKCELLLRIKPMN 188

Query: 59  DCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAK 118
           D  A CP     K GA   EI  LL  A AS+L V G+SFHIGSG  D  A+ GAI+AAK
Sbjct: 189 DGNARCPMG--PKYGALPEEIEPLLRIAQASRLTVSGVSFHIGSGDADSNAYLGAIAAAK 246

Query: 119 AVFDAASARHGLTDQ---------------MRAKHWRRGRADCHFGAGP----------F 153
            VF+ A A+ G++                   A    +     HF   P          F
Sbjct: 247 QVFETA-AKFGMSKMNVLDIGGGFTSGHQFTTAATAVKSALQQHFSNEPELTIIAEPGRF 305

Query: 154 PRDSAFTLATR--------NCRE------------------------SSAC-SNRT---C 177
             ++AFTLAT         + RE                          AC SNR    C
Sbjct: 306 FAETAFTLATTIIGKRVRGDLREYWINDGLYGSMNCVLYDHATVTATPLACMSNRVNLNC 365

Query: 178 TG-MIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADI 234
           +G  ++ ST+FGPT DA D +   +  PELQV +W++F  +GA T   GS F GFNT+ I
Sbjct: 366 SGSKMFPSTIFGPTCDALDTVLRDYHVPELQVNDWVIFPNMGAYTKAAGSNFNGFNTSAI 425

Query: 235 PTCL 238
            T L
Sbjct: 426 VTHL 429

Capsicum annuum (taxid: 4072)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7
>sp|P50134|DCOR_DATST Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1 Back     alignment and function description
>sp|O22616|DCOR_SOLLC Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2 Back     alignment and function description
>sp|Q9UQW9|DCOR_SCHPO Ornithine decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spe1 PE=2 SV=1 Back     alignment and function description
>sp|P08432|DCOR_YEAST Ornithine decarboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPE1 PE=1 SV=1 Back     alignment and function description
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase OS=Mus musculus GN=Odc1 PE=1 SV=2 Back     alignment and function description
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (Fragment) OS=Gallus gallus GN=ODC1 PE=2 SV=1 Back     alignment and function description
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase OS=Bos taurus GN=ODC1 PE=2 SV=1 Back     alignment and function description
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE=1 SV=2 Back     alignment and function description
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
224085964 416 predicted protein [Populus trichocarpa] 0.966 0.557 0.378 1e-32
349617697 413 ornithine decarboxylase [Erythroxylum co 0.858 0.498 0.377 8e-31
224061945 381 predicted protein [Populus trichocarpa] 0.858 0.540 0.384 1e-30
124298701 411 putative ornithine decarboxylase [Theobr 0.966 0.564 0.358 2e-29
28627544 435 putative ornithine decarboxylase 1 [Caps 0.966 0.533 0.351 3e-27
75303413 435 RecName: Full=Ornithine decarboxylase; S 0.966 0.533 0.348 8e-27
359491943 411 PREDICTED: LOW QUALITY PROTEIN: ornithin 0.929 0.542 0.361 1e-26
1706323 431 RecName: Full=Ornithine decarboxylase; S 0.966 0.538 0.348 3e-26
334351358 440 lysine/ornithine decarboxylase [Lupinus 0.970 0.529 0.338 4e-26
334351366 455 lysine/ornithine decarboxylase [Echinoso 0.970 0.512 0.342 1e-25
>gi|224085964|ref|XP_002307756.1| predicted protein [Populus trichocarpa] gi|222857205|gb|EEE94752.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 148/304 (48%), Gaps = 72/304 (23%)

Query: 4   ALGVSGKSVSLTVALRNENGL--AEALGSN---FDYASQAEIKGKWHPRCDLLIRIKALD 58
           +LGVS   +      + E+ +  A ++G N   FD   + +   KWH +C LLIRIKA D
Sbjct: 110 SLGVSPNRIVYANPCKQESHIKYAASVGVNLTTFDSKEELDKIRKWHSKCALLIRIKAPD 169

Query: 59  DCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAK 118
           D  A CP     K GA   E+  LL+AA  +QL VVG+SFHIGSGAT   A++GAI++AK
Sbjct: 170 DSGARCPLG--PKYGALPDEVTPLLQAAQTAQLNVVGVSFHIGSGATRSRAYEGAIASAK 227

Query: 119 AVFDAASARHGLTDQM---------------RAKHWRRGRADCHFGAGP----------F 153
           +VF+AA  R G+                    A    +     +F   P          F
Sbjct: 228 SVFEAA-VRLGMPGMKILNIGGGFTAGSQFDEAATTIKSALQAYFPNEPGLTVISEPGRF 286

Query: 154 PRDSAFTLATR--------NCRE----------------------------SSACSNRTC 177
             +SAFTLAT         + RE                            +S  +N TC
Sbjct: 287 FAESAFTLATNIIGKRVRGDLREYWINDGIYGSMNCILYDHATITCTPLACNSNHANLTC 346

Query: 178 TGM-IYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADI 234
            G+  Y+STVFGPT DA D + TGH  PELQ+ +WLVF  +GA TA  GS F GFNTA I
Sbjct: 347 KGLRAYSSTVFGPTCDALDTVLTGHQLPELQINDWLVFPNMGAYTAAAGSSFNGFNTAAI 406

Query: 235 PTCL 238
            T L
Sbjct: 407 LTHL 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|349617697|gb|AEQ02350.1| ornithine decarboxylase [Erythroxylum coca] Back     alignment and taxonomy information
>gi|224061945|ref|XP_002300677.1| predicted protein [Populus trichocarpa] gi|222842403|gb|EEE79950.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|124298701|gb|ABN04356.1| putative ornithine decarboxylase [Theobroma cacao] Back     alignment and taxonomy information
>gi|28627544|gb|AAL83709.1| putative ornithine decarboxylase 1 [Capsicum annuum] Back     alignment and taxonomy information
>gi|75303413|sp|Q8S3N2.1|DCOR_CAPAN RecName: Full=Ornithine decarboxylase; Short=ODC; AltName: Full=CaODC1; AltName: Full=CapODC gi|19387300|gb|AAL87201.1|AF480882_1 ornithine decarboxylase [Capsicum annuum] Back     alignment and taxonomy information
>gi|359491943|ref|XP_003634343.1| PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase [Vitis vinifera] Back     alignment and taxonomy information
>gi|1706323|sp|P50134.1|DCOR_DATST RecName: Full=Ornithine decarboxylase; Short=ODC gi|871008|emb|CAA61121.1| ornithine decarboxylase [Datura stramonium] Back     alignment and taxonomy information
>gi|334351358|dbj|BAK32797.1| lysine/ornithine decarboxylase [Lupinus angustifolius] Back     alignment and taxonomy information
>gi|334351366|dbj|BAK32801.1| lysine/ornithine decarboxylase [Echinosophora koreensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
UNIPROTKB|P27118450 ODC1 "Ornithine decarboxylase" 0.220 0.117 0.4 1.2e-11
MGI|MGI:97402461 Odc1 "ornithine decarboxylase, 0.220 0.114 0.381 1.7e-11
RGD|3227461 Odc1 "ornithine decarboxylase 0.220 0.114 0.381 1.7e-11
UNIPROTKB|F1NKA3450 ODC1 "Ornithine decarboxylase" 0.220 0.117 0.4 1.2e-10
UNIPROTKB|F1NT03460 ODC1 "Ornithine decarboxylase" 0.220 0.115 0.4 1.3e-10
UNIPROTKB|P27117461 ODC1 "Ornithine decarboxylase" 0.220 0.114 0.381 2.4e-10
UNIPROTKB|P11926461 ODC1 "Ornithine decarboxylase" 0.220 0.114 0.381 2.5e-10
UNIPROTKB|I3LTY3449 ODC1 "Uncharacterized protein" 0.2 0.106 0.4 5.4e-10
UNIPROTKB|E2R8D9461 ODC1 "Uncharacterized protein" 0.220 0.114 0.363 7.6e-10
ZFIN|ZDB-GENE-010816-1461 odc1 "ornithine decarboxylase 0.225 0.117 0.392 8.3e-10
UNIPROTKB|P27118 ODC1 "Ornithine decarboxylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 114 (45.2 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query:   182 YNSTVFGPTLDAYDKLFT--GHPELQVGNWLVFSQIGACTAVYGSGFKGFNTADI 234
             Y+ +++GPT D  D++      PELQVG+W++F  +GA T    S F GF    I
Sbjct:   341 YSCSIWGPTCDGLDRIVERCNMPELQVGDWILFENMGAYTVAAASTFNGFQRPTI 395
GO:0004586 "ornithine decarboxylase activity" evidence=IEA
GO:0033387 "putrescine biosynthetic process from ornithine" evidence=IEA
MGI|MGI:97402 Odc1 "ornithine decarboxylase, structural 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3227 Odc1 "ornithine decarboxylase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKA3 ODC1 "Ornithine decarboxylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NT03 ODC1 "Ornithine decarboxylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P27117 ODC1 "Ornithine decarboxylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P11926 ODC1 "Ornithine decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LTY3 ODC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8D9 ODC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010816-1 odc1 "ornithine decarboxylase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
cd00622362 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosp 2e-20
pfam02784245 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent deca 2e-16
cd00622362 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosp 9e-09
COG0019394 COG0019, LysA, Diaminopimelate decarboxylase [Amin 3e-08
cd06810368 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyrido 2e-06
pfam00278110 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent de 3e-05
cd06810368 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyrido 2e-04
cd06808211 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate 3e-04
cd06831394 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxa 4e-04
cd06828373 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-pho 8e-04
cd06831394 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxa 0.002
>gnl|CDD|143482 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information 
 Score = 88.3 bits (220), Expect = 2e-20
 Identities = 49/151 (32%), Positives = 61/151 (40%), Gaps = 50/151 (33%)

Query: 27  ALGSNFDYASQAEIK--------------------------------------------- 41
           ALG+ FD AS+ EI+                                             
Sbjct: 46  ALGAGFDCASKGEIELVLGLGVSPERIIFANPCKSISDIRYAAELGVRLFTFDSEDELEK 105

Query: 42  -GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHI 100
             K  P   LL+RI A DD  A+CP +   K GA+  E   LL  A    L VVG+SFH+
Sbjct: 106 IAKHAPGAKLLLRI-ATDDSGALCPLS--RKFGADPEEARELLRRAKELGLNVVGVSFHV 162

Query: 101 GSGATDFGAFDGAISAAKAVFDAASARHGLT 131
           GS  TD  A+  AI+ A+ VFD A A  G  
Sbjct: 163 GSQCTDPSAYVDAIADAREVFDEA-AELGFK 192

This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein. Length = 362
>gnl|CDD|217230 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase, pyridoxal binding domain Back     alignment and domain information
>gnl|CDD|143482 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>gnl|CDD|223098 COG0019, LysA, Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|143485 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>gnl|CDD|215835 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarboxylase, C-terminal sheet domain Back     alignment and domain information
>gnl|CDD|143485 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>gnl|CDD|143484 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>gnl|CDD|143504 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>gnl|CDD|143504 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 240
KOG0622448 consensus Ornithine decarboxylase [Amino acid tran 100.0
cd06831394 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosph 100.0
COG0019394 LysA Diaminopimelate decarboxylase [Amino acid tra 100.0
cd06840368 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phos 100.0
cd06836379 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-ph 100.0
cd06830409 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP) 100.0
PLN02537410 diaminopimelate decarboxylase 100.0
PRK11165420 diaminopimelate decarboxylase; Provisional 100.0
TIGR03099398 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, ex 100.0
cd06843377 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate 100.0
TIGR01048417 lysA diaminopimelate decarboxylase. This family co 100.0
PRK08961861 bifunctional aspartate kinase/diaminopimelate deca 100.0
cd06828373 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PL 100.0
cd06839382 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate 100.0
cd06829346 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (P 100.0
cd00622362 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP) 100.0
TIGR01047380 nspC carboxynorspermidine decarboxylase. This prot 100.0
cd06841379 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate 100.0
cd06810368 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phos 100.0
cd06842423 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate 100.0
PRK05354634 arginine decarboxylase; Provisional 99.95
TIGR01273 624 speA arginine decarboxylase, biosynthetic. A disti 99.94
PF02784251 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, 99.93
PLN02439559 arginine decarboxylase 99.92
PF00278116 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase 99.76
cd06808211 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dep 99.71
cd00430367 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)- 99.61
COG1166 652 SpeA Arginine decarboxylase (spermidine biosynthes 99.61
TIGR00492367 alr alanine racemase. This enzyme interconverts L- 99.06
cd00635222 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosph 99.05
cd06819358 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate ( 99.0
cd06812374 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-pho 98.99
PRK13340406 alanine racemase; Reviewed 98.91
PRK00053363 alr alanine racemase; Reviewed 98.85
cd06811382 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate 98.74
cd06827354 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosp 98.74
cd06818382 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phospha 98.71
cd06813388 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-pho 98.65
cd06820353 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosph 98.58
cd06821361 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP 98.45
cd06824224 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-bi 98.43
cd06826365 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP) 98.42
cd07376345 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosp 98.39
PF01168218 Ala_racemase_N: Alanine racemase, N-terminal domai 98.0
TIGR00044229 pyridoxal phosphate enzyme, YggS family. Members o 97.83
cd06815353 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate 97.28
cd06822227 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)- 97.25
cd06825368 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP 97.24
PRK03646355 dadX alanine racemase; Reviewed 97.05
cd06817389 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP) 96.99
cd06814379 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-pho 96.91
COG0325228 Predicted enzyme with a TIM-barrel fold [General f 96.69
COG0787360 Alr Alanine racemase [Cell envelope biogenesis, ou 96.58
PRK11930822 putative bifunctional UDP-N-acetylmuramoyl-tripept 96.55
KOG3157244 consensus Proline synthetase co-transcribed protei 94.47
COG3457353 Predicted amino acid racemase [Amino acid transpor 91.9
PRK09250348 fructose-bisphosphate aldolase; Provisional 87.42
COG1830265 FbaB DhnA-type fructose-1,6-bisphosphate aldolase 86.45
PRK06852304 aldolase; Validated 82.18
TIGR01229300 rocF_arginase arginase. This model helps resolve a 80.29
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.8e-55  Score=377.67  Aligned_cols=231  Identities=35%  Similarity=0.560  Sum_probs=206.7

Q ss_pred             CcccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc---CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCC
Q 048797            1 MLNALGVSGKSVSLTVALRNENGLAEALGSNFDYA---SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGAN   75 (240)
Q Consensus         1 ~al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~---s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~   75 (240)
                      +++.+||+|+||||++|+|+.++|++|.++||.++   |+.||.  ++.+|+++++|||++ +++.+.+.++.  |||++
T Consensus       115 lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~~tfDne~el~kv~~~hP~a~llLrIat-dds~a~~~l~~--KFG~~  191 (448)
T KOG0622|consen  115 LVLSLGVSPERIIYANPCKQVSQIKYAAKHGVSVMTFDNEEELEKVAKSHPNANLLLRIAT-DDSTATCRLNL--KFGCS  191 (448)
T ss_pred             HHHhcCCChHHeEecCCCccHHHHHHHHHcCCeEEeecCHHHHHHHHHhCCCceEEEEEcc-CCCcccccccC--ccCCC
Confidence            36789999999999999999999999999999977   999999  788999999999999 88877777777  99999


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----------------
Q 048797           76 LAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH-----------------  138 (240)
Q Consensus        76 ~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld-----------------  138 (240)
                      .+++..+|+.||+++++++|+|||+||.+.+++.|.+|+..++.+|++ +.++|+  .+.+||                 
T Consensus       192 ~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~-g~e~Gf--~m~~LdiGGGf~g~~~~~~~fe~  268 (448)
T KOG0622|consen  192 LDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDM-GAELGF--EMDILDIGGGFPGDEGHAVVFEE  268 (448)
T ss_pred             HHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH-HHhcCc--eEEEeecCCCCCCccchhhhhhh
Confidence            999999999999999999999999999999999999999999999999 889999  999999                 


Q ss_pred             ---hhHHHHhhhcCCC-------C--eeeeCceEEEEe-----------------------------------Ccee---
Q 048797          139 ---WRRGRADCHFGAG-------P--FPRDSAFTLATR-----------------------------------NCRE---  168 (240)
Q Consensus       139 ---~i~~~l~~~~~~~-------p--~lva~a~~l~t~-----------------------------------n~~~---  168 (240)
                         .|+.+++.+||..       |  |+|++|++|++.                                   ||++   
T Consensus       269 i~~~In~ald~~Fp~~~v~iiaEpGRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~nDGVYGsfnciL~D~  348 (448)
T KOG0622|consen  269 IADVINTALDLYFPSGGVDIIAEPGRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVNDGVYGSFNCILFDH  348 (448)
T ss_pred             HHHHHHHHHHHhCCCCCceEEeccchheeechheeeeeeeeeeeccccccCccccccCceEEEEEccceeeeechhhhcc
Confidence               6889999999972       5  999999999998                                   2222   


Q ss_pred             ----eeeccCCCCCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEEe
Q 048797          169 ----SSACSNRTCTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCL  238 (240)
Q Consensus       169 ----P~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~i  238 (240)
                          |..+.......+...++|||||||+.|++.++.  |.+.+||||+|+||||||++++|.||++++|. .+|+
T Consensus       349 ~~~i~~~~~~~~e~e~~~~ssIwGPtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAYT~~~aS~fNgf~~p~-~~y~  423 (448)
T KOG0622|consen  349 QHPIPLVVKDPSEEEPLYKSSIWGPTCDGLDVIAEDCLLPQLNVGDWLVFENMGAYTMSAASTFNGFQRPK-IYYV  423 (448)
T ss_pred             cCCcccccCCCccccceeeeeeecCCcchHHHHHhhccCCCCCccCeEEEccCCccccccccccCCCCCCc-eEEE
Confidence                222222112233678999999999999999998  99999999999999999999999999999996 6665

>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>PLN02537 diaminopimelate decarboxylase Back     alignment and domain information
>PRK11165 diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated Back     alignment and domain information
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>TIGR01048 lysA diaminopimelate decarboxylase Back     alignment and domain information
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>TIGR01047 nspC carboxynorspermidine decarboxylase Back     alignment and domain information
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>PRK05354 arginine decarboxylase; Provisional Back     alignment and domain information
>TIGR01273 speA arginine decarboxylase, biosynthetic Back     alignment and domain information
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>PLN02439 arginine decarboxylase Back     alignment and domain information
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase Back     alignment and domain information
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00492 alr alanine racemase Back     alignment and domain information
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase Back     alignment and domain information
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1 Back     alignment and domain information
>PRK13340 alanine racemase; Reviewed Back     alignment and domain information
>PRK00053 alr alanine racemase; Reviewed Back     alignment and domain information
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX Back     alignment and domain information
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases Back     alignment and domain information
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase Back     alignment and domain information
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2 Back     alignment and domain information
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like Back     alignment and domain information
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase Back     alignment and domain information
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2 Back     alignment and domain information
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase Back     alignment and domain information
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine Back     alignment and domain information
>TIGR00044 pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1 Back     alignment and domain information
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins Back     alignment and domain information
>PRK03646 dadX alanine racemase; Reviewed Back     alignment and domain information
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase Back     alignment and domain information
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3 Back     alignment and domain information
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only] Back     alignment and domain information
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09250 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK06852 aldolase; Validated Back     alignment and domain information
>TIGR01229 rocF_arginase arginase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
1njj_A425 Crystal Structure Determination Of T. Brucei Ornith 2e-07
1qu4_A425 Crystal Structure Of Trypanosoma Brucei Ornithine D 2e-07
1szr_C425 A Dimer Interface Mutant Of Ornithine Decarboxylase 2e-07
2tod_A425 Ornithine Decarboxylase From Trypanosoma Brucei K69 2e-07
7odc_A424 Crystal Structure Ornithine Decarboxylase From Mous 3e-06
2on3_A461 A Structural Insight Into The Inhibition Of Human A 7e-06
2oo0_A471 A Structural Insight Into The Inhibition Of Human A 7e-06
1d7k_A421 Crystal Structure Of Human Ornithine Decarboxylase 8e-06
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine Decarboxylase Bound To D-ornithine And To G418 Length = 425 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 181 IYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADI 234
           +Y S+V+GPT D  D++   +  PE+QVG WL+F  +GA T V  S F GF +  I
Sbjct: 350 LYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTI 405
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine Decarboxylase Length = 425 Back     alignment and structure
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase Reveals Structure Of Gem Diamine Intermediate Length = 425 Back     alignment and structure
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a Mutant In Complex With Alpha-Difluoromethylornithine Length = 425 Back     alignment and structure
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse, Truncated 37 Residues From The C-Terminus, To 1.6 Angstrom Resolution Length = 424 Back     alignment and structure
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And Leishmania Donovani Ornithine Decarboxylases By 3-Aminooxy- 1-Aminopropane Length = 461 Back     alignment and structure
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And Leishmania Donovani Ornithine Decarboxylases By 3-Aminooxy-1-Aminopropane Length = 471 Back     alignment and structure
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1 Angstroms Resolution Length = 421 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 7e-29
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 5e-28
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 3e-20
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 4e-11
2oo0_A 471 ODC, ornithine decarboxylase; beta-alpha barrel, s 6e-20
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 1e-10
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 8e-20
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 9e-11
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 1e-19
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 7e-09
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 1e-04
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 6e-04
2o0t_A 467 Diaminopimelate decarboxylase; PLP binding enzyme, 7e-04
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Length = 425 Back     alignment and structure
 Score =  111 bits (280), Expect = 7e-29
 Identities = 70/279 (25%), Positives = 100/279 (35%), Gaps = 80/279 (28%)

Query: 31  NFDYASQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALA 88
            FD     E++   K HP+  +++RI   DD  A C  +   K GA + +   +LE A  
Sbjct: 132 TFD--CVDELEKVAKTHPKAKMVLRIST-DDSLARCRLS--VKFGAKVEDCRFILEQAKK 186

Query: 89  SQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARH----------GLTDQMRAK- 137
             + V G+SFH+GSG+TD   F  AIS ++ VFD  +             G      A  
Sbjct: 187 LNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPL 246

Query: 138 ------HWRRGRADCHFGAGPFPR----------DSAFTLATR----------NCRESSA 171
                        + HF                  SAFTLA                 + 
Sbjct: 247 KFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAH 306

Query: 172 CSNRTCTGMIY---------NSTVF-------------------------GPTLDAYDKL 197
             +   + M Y         N  ++                         GPT D  D++
Sbjct: 307 AESNAQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQI 366

Query: 198 FTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADI 234
              +  PE+QVG WL+F  +GA T V  S F GF +  I
Sbjct: 367 VERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTI 405
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Length = 448 Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Length = 424 Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Length = 424 Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Length = 471 Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Length = 471 Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Length = 372 Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Length = 372 Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Length = 419 Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Length = 419 Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Length = 425 Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Length = 428 Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Length = 467 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 100.0
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 100.0
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 100.0
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 100.0
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 100.0
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 100.0
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 100.0
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 100.0
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 100.0
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 100.0
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 100.0
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 100.0
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 100.0
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 100.0
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 100.0
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 100.0
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 100.0
3nzp_A619 Arginine decarboxylase; alpha-beta protein, struct 99.94
3nzq_A 666 ADC, biosynthetic arginine decarboxylase; alpha-be 99.93
3n2o_A 648 ADC, biosynthetic arginine decarboxylase; lyase; H 99.93
1xfc_A384 Alanine racemase; alpha-beta barrel, beta-structur 99.74
2dy3_A361 Alanine racemase; alpha/beta barrel, isomerase; HE 99.7
2vd8_A391 Alanine racemase; pyridoxal 5'-phosphate, peptidog 99.62
1bd0_A388 Alanine racemase; isomerase, pyridoxal phosphate, 99.61
1vfs_A386 Alanine racemase; TIM-barrel, greek-KEY motief, is 99.61
1rcq_A357 Catabolic alanine racemase DADX; alpha-beta barrel 99.46
3co8_A380 Alanine racemase; protein structure initiative II, 99.44
2rjg_A379 Alanine racemase; alpha/beta barrel, cell shape, c 99.28
3anu_A376 D-serine dehydratase; PLP-dependent fold-type III 98.99
4ecl_A374 Serine racemase, vantg; antibiotic resistance, van 98.94
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 98.85
3gwq_A426 D-serine deaminase; structural genomics, joint cen 98.67
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 98.37
3llx_A376 Predicted amino acid aldolase or racemase; structu 98.24
3mub_A367 Alanine racemase; alpha/beta barrel, extended beta 98.23
3kw3_A376 Alanine racemase; niaid, ssgcid, seattle structura 98.18
3e5p_A371 Alanine racemase; ALR, PLP, SCP, isomerase, pyrido 98.17
4a3q_A382 Alanine racemase 1; isomerase, PLP-dependent enzym 98.12
3hur_A395 Alanine racemase; structural genomics, isomerase, 97.48
3r79_A244 Uncharacterized protein; PSI-biology, structural g 96.83
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 96.17
3m1r_A322 Formimidoylglutamase; structural genomics, PSI-2, 80.55
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-46  Score=338.94  Aligned_cols=231  Identities=33%  Similarity=0.529  Sum_probs=188.0

Q ss_pred             cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCc--c-CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797            2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDY--A-SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANL   76 (240)
Q Consensus         2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~--~-s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~   76 (240)
                      ++++|+++++|+|+||+|++++|++|+++|+..  + |++||+  .+..++++|.||||+ +...+....  .||||+++
T Consensus        98 ~~~~G~~~~~Ii~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lRvn~-~~~~~~~~~--~skfG~~~  174 (424)
T 7odc_A           98 VQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIAT-DDSKAVCRL--SVKFGATL  174 (424)
T ss_dssp             HHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC--------------CCCBCH
T ss_pred             HHHcCCChhhEEECCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCeEEEEECC-CCCCCCCCC--CCCCCCCH
Confidence            577899999999999999999999999999974  3 999999  566677999999999 543332223  34999999


Q ss_pred             HHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc------------------
Q 048797           77 AEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH------------------  138 (240)
Q Consensus        77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld------------------  138 (240)
                      +++.++++.+++.++++.|||||+|||+.|++.|.++++.+.++++. .++.|+  ++++||                  
T Consensus       175 ~~~~~~~~~~~~~~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~-~~~~G~--~~~~ldiGGG~~~~~~~~~~~~~~  251 (424)
T 7odc_A          175 KTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDM-ATEVGF--SMHLLDIGGGFPGSEDTKLKFEEI  251 (424)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHH-HHHHTC--CCCEEECCCCCCCSSSSSSCHHHH
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-HHhcCC--CCCEEEeCCCcCCCCCCCCCHHHH
Confidence            99999999998889999999999999999999999999999999987 677899  999999                  


Q ss_pred             --hhHHHHhhhcCC--------CC--eeeeCceEEEEe------Cc------------------e-e---------eeec
Q 048797          139 --WRRGRADCHFGA--------GP--FPRDSAFTLATR------NC------------------R-E---------SSAC  172 (240)
Q Consensus       139 --~i~~~l~~~~~~--------~p--~lva~a~~l~t~------n~------------------~-~---------P~~~  172 (240)
                        .|++.++++|+.        ||  |+|++||+|+|+      +.                  . +         |.++
T Consensus       252 a~~i~~~~~~~~~~~~~~~ii~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ly  331 (424)
T 7odc_A          252 TSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCILY  331 (424)
T ss_dssp             HHHHHHHHHHHSCGGGTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTTTHHHHH
T ss_pred             HHHHHHHHHHHhcccCCcEEEECCCHHhhhhcEEEEEEEEEEEEccccccccccccccCcceEEEEEeCCcCCChhhHhh
Confidence              456677777652        25  999999999998      10                  0 0         2221


Q ss_pred             cC---------CC-CCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEEe
Q 048797          173 SN---------RT-CTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCL  238 (240)
Q Consensus       173 ~~---------~~-~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~i  238 (240)
                      ..         .. ...+.++++|+||||+++|+|.+++  |++++||||+|.+|||||++|+|+||++++|++++++
T Consensus       332 ~~~~~~p~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~s~ss~fN~~~~p~~v~~~  409 (424)
T 7odc_A          332 DHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM  409 (424)
T ss_dssp             SCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEEE
T ss_pred             ccCccceeeecCCCCCCCeeeEEEECCCCCCCCEecccccCCCCCCCCEEEECCCCCCchhhccCCCCCCCCeEEEEE
Confidence            11         00 1223578999999999999999888  9999999999999999999999999999999866554
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Back     alignment and structure
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Back     alignment and structure
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A Back     alignment and structure
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Back     alignment and structure
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Back     alignment and structure
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni} Back     alignment and structure
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Back     alignment and structure
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A* Back     alignment and structure
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Back     alignment and structure
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Back     alignment and structure
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Back     alignment and structure
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Back     alignment and structure
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae} Back     alignment and structure
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Back     alignment and structure
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A Back     alignment and structure
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Back     alignment and structure
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Back     alignment and structure
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Back     alignment and structure
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 240
d7odca1177 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine d 6e-07
d1f3ta1169 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine 2e-06
d1knwa1174 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarb 0.003
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 177 Back     information, alignment and structure

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: Alanine racemase C-terminal domain-like
family: Eukaryotic ODC-like
domain: Eukaryotic ornithine decarboxylase (ODC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.8 bits (108), Expect = 6e-07
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 174 NRTCTGMIYNSTVFGPTLDAYDKLFTG--HPELQVGNWLVFSQIGACTAVYGSGFKGFNT 231
                   Y+S+++GPT D  D++      PE+ VG+W++F  +GA T    S F GF  
Sbjct: 102 RPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQR 161

Query: 232 ADI 234
            +I
Sbjct: 162 PNI 164
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Length = 169 Back     information, alignment and structure
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
d1f3ta2240 Eukaryotic ornithine decarboxylase {Trypanosoma br 99.95
d7odca2240 Eukaryotic ornithine decarboxylase {Mouse (Mus mus 99.95
d1hkva2265 Diaminopimelate decarboxylase LysA {Mycobacterium 99.91
d1twia2264 Diaminopimelate decarboxylase LysA {Archaeon Metha 99.9
d1knwa2247 Diaminopimelate decarboxylase LysA {Escherichia co 99.9
d1f3ta1169 Eukaryotic ornithine decarboxylase (ODC) {Trypanos 99.86
d7odca1177 Eukaryotic ornithine decarboxylase (ODC) {Mouse (M 99.86
d1twia1170 Diaminopimelate decarboxylase LysA {Archaeon Metha 99.8
d1hkva1181 Diaminopimelate decarboxylase LysA {Mycobacterium 99.76
d1knwa1174 Diaminopimelate decarboxylase LysA {Escherichia co 99.75
d1vfsa2237 Alanine racemase {Streptomyces lavendulae [TaxId: 97.31
d1rcqa2226 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 96.51
d1bd0a2233 Alanine racemase {Bacillus stearothermophilus [Tax 95.73
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Eukaryotic ornithine decarboxylase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.95  E-value=1.3e-27  Score=198.79  Aligned_cols=152  Identities=30%  Similarity=0.462  Sum_probs=126.5

Q ss_pred             CcccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc---CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCC
Q 048797            1 MLNALGVSGKSVSLTVALRNENGLAEALGSNFDYA---SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGAN   75 (240)
Q Consensus         1 ~al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~---s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~   75 (240)
                      +|+++|++|++|+|+||+|++++|++|+++|+.++   |++|++  .+..+..++.+|+++ ....+..  +..||||++
T Consensus        54 ~al~~G~~~~~Iif~g~~k~~~ei~~a~~~g~~~~~~ds~~el~~i~~~~~~~~~~~ri~~-~~~~~~~--~~~~kFGi~  130 (240)
T d1f3ta2          54 RVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIST-DDSLARC--RLSVKFGAK  130 (240)
T ss_dssp             HHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC-------------CCSCBC
T ss_pred             HHHHcCCCccceeeccccchhHHHHHHHHhcccceeeeehhhhhhhhhhcccccccccccc-ccccccc--cccccchhh
Confidence            37889999999999999999999999999999765   999999  677888999999998 5332222  224599999


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----------------
Q 048797           76 LAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH-----------------  138 (240)
Q Consensus        76 ~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld-----------------  138 (240)
                      .+++.++++.+++.++++.|||||+|||+.+++.|.++++.+..+++. .++.|+  ++++||                 
T Consensus       131 ~~~~~~~~~~~~~~~~~l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~~ldiGGG~~~~~~~~~~~~~  207 (240)
T d1f3ta2         131 VEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDM-GTELGF--NMHILDIGGGFPGTRDAPLKFEE  207 (240)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHH-HHHTTC--CCCEEECCCCCCSSTTSSSCHHH
T ss_pred             HHHHHHHHHHHhccccceeeeeeehhhcccCHHHHHHHHHHHHHHHHH-HHHcCC--CceeeeccCccCCCCCCCCCHHH
Confidence            999999999999999999999999999999999999999999999988 677899  999999                 


Q ss_pred             ---hhHHHHhhhcCC--------CC--eeeeCc
Q 048797          139 ---WRRGRADCHFGA--------GP--FPRDSA  158 (240)
Q Consensus       139 ---~i~~~l~~~~~~--------~p--~lva~a  158 (240)
                         .|.+.++++++.        ||  |+||+|
T Consensus       208 ~~~~i~~~l~~~~~~~~~~~l~~EPGR~lva~A  240 (240)
T d1f3ta2         208 IAGVINNALEKHFPPDLKLTIVAEPGRYYVASA  240 (240)
T ss_dssp             HHHHHHHHHHHHSCCCTTCEEEECCSHHHHGGG
T ss_pred             HHHHHHHHHHHhcCcCCCCEEEEecCHHHhcCC
Confidence               456677777653        24  777664
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure