Citrus Sinensis ID: 048810

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580--
Protein Sequence
MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVVAVSIAEDEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGKC
Secondary Structure (PSIPRED)
ccccccEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccEEcccccEEEEcHHHHHHHHHHHHcccEEEEcccccccccccccEEEcEEEEEcccccccccccccccccEEEEEEEccccccccccHHHHcccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEcccccccccccHHHcccccccEEEcccccccccccccccccccccccccccccccccEEEEccccccHHHHcccccccEEEEEEEcccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccEEEEEcccccEEEccccccccccccccccEEEEEccccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHcccccccccHHHHHccHHccccHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEEEcccccccccccccccccEEEEEEccccccccccHHHHHHccccEEEEEcccccccccccHcccccccEEEccccccccccccccccccEEEEEccccccHccHHHcccccccEEEEccccccccccccHccccccccEEEEEcccccccccccccHHHHHHHHccccccEEEccccccccccccccHHHccccEEEccccccccccccccccHHHHHHHcccccccccccccccccccccEEEEccccccccccccccccccccccEEEEccccccEEcccccccccccccccccEEEEcccHcHHHHccccccccccccccEEEEEcccccHccccccccHcccccccEEEEcccHHHHHHHccc
Coil and Loop (DISEMBL)
MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCglfseghaipvpyllrygmgmgyFKEVYTVEEARSRVHTLIGKLKSLCLlldgdaedevkmHDVIRVVAVSIaedehmfnipnvADLEKKMEETIrkdpiaislpyrgdqvlpqrmrcprlgLFLLHTIGlcsiqvsdhffegmeglkvlqfpgigssslpsSLDRLINLQTlcldgcrlkdiakvgqlkklevlsfrdsdieqlplEIGQLRRLQlldlsncwtleviapnvISKLSRLEELYMGNSFkrwekveggsnaslvelnglsklttLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLEtlegvpsvvhelddgegfprlkHLYVESCSEILHIVGSVrrvgcevfpLLETLYLIGLANLETICCSQlredqsfsnlRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGKC
Flexible Loop (DISEMBL)
mnsqkeiqidvlsKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAkeidgmeknVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVVAvsiaedehmfnipNVADLEKKMEETIrkdpiaislpyrgdqvlPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFigeargrwfvksetsrlmklerLKSVsillrnpgmrMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGKC
Low Complexity Region (SEG)
MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTligklkslcllldgdAEDEVKMHDVIRVVAVSIAEDEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFpgigssslpsslDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGKC
Disordered region (IsUnstruct)
**********VLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVVAVSIAEDEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMII***
Disordered Region (DISOPRED)
***QKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRS**********KNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVVAVSIAEDEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAP**ISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGKC
Disordered Region (DISEMBL)
MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVVAVSIAEDEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGKC
Disordered Region (DISPRO)
****KEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVVAVSIAEDEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGKC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVVAVSIAEDEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGKC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	582	2.2.26 [Sep-21-2011]
Q9T048	985	Disease resistance protei	yes	no	0.955	0.564	0.298	2e-52
Q42484	909	Disease resistance protei	no	no	0.865	0.554	0.273	3e-41
O81825	919	Probable disease resistan	no	no	0.920	0.583	0.292	4e-41
Q9FG90	862	Probable disease resistan	no	no	0.512	0.345	0.288	2e-24
P60838	894	Probable disease resistan	no	no	0.505	0.328	0.302	2e-22
Q9FG91	848	Probable disease resistan	no	no	0.585	0.402	0.302	2e-22
Q9LVT4	843	Probable disease resistan	no	no	0.561	0.387	0.294	2e-22
Q9LMP6	851	Probable disease resistan	no	no	0.319	0.218	0.352	2e-22
O22727	967	Probable disease resistan	no	no	0.850	0.511	0.256	3e-22
Q9C8K0	854	Probable disease resistan	no	no	0.508	0.346	0.291	6e-22

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score =  207 bits (528), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 181/606 (29%), Positives = 301/606 (49%), Gaps = 50/606 (8%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
           M +  ++++D L +E+A +LF K  GD +++   + IA  +   CGGLP+A+IT+  A++
Sbjct: 291 MKTDLDVRVDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAMR 350

Query: 61  -NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGH 119
             +++  W  VL +L  S    I  +E+ ++  +KLSYDFL  ++AK  FLLC LF E +
Sbjct: 351 GKKNVKLWNHVLSKLSKSVPW-IKSIEEKIFQPLKLSYDFL-EDKAKFCFLLCALFPEDY 408

Query: 120 AIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRV 179
           +I V  ++RY M  G+ +E+ + E++ +   T +  LK  CLL DGD  D VKMHDV+R 
Sbjct: 409 SIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRD 468

Query: 180 VAVSI----AEDEHMFNIPNVADLEKKMEETIRKDPIA-----ISLPYRGDQVLPQRMR- 229
            A+ I     +D H   +           + IR+D +A     +SL     + LP  +  
Sbjct: 469 FAIWIMSSSQDDSHSLVMSGTG------LQDIRQDKLAPSLRRVSLMNNKLESLPDLVEE 522

Query: 230 -CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCL 287
            C +  + LL    L   +V   F +    L++L   G    S PS SL RL +L +L L
Sbjct: 523 FCVKTSVLLLQGNFLLK-EVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFL 581

Query: 288 DGC-RLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVI 346
             C +L  +  +  L KLE+L    + I + P  + +L+R + LDLS    LE I   V+
Sbjct: 582 RDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVV 641

Query: 347 SKLSRLEELYMGNSFKRWEKVEGGS---NASLVELNGLSKLTTLEIHVRYAEIL--PQDL 401
           S+LS LE L M +S  RW  V+G +    A++ E+  L +L  L I +  +  L   ++ 
Sbjct: 642 SRLSSLETLDMTSSHYRW-SVQGETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNT 700

Query: 402 VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLET 461
               L+++++ +G    R+ +++   +     RL    + +    +  LL  T  L L  
Sbjct: 701 WIKRLKKFQLVVG---SRYILRTRHDK----RRLTISHLNVSQVSIGWLLAYTTSLALNH 753

Query: 462 LEGVPSVVHEL-DDGEGFPRLKHLYVESCSEILHIVGSVRRVGC----------EVFPLL 510
            +G+ +++ +L  D +GF  LK L +E+   I++    V  V            ++ P L
Sbjct: 754 CQGIEAMMKKLVSDNKGFKNLKSLTIENV--IINTNSWVEMVSTNTSKQSSDILDLLPNL 811

Query: 511 ETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVE 570
           E L+L    +LET    Q         L+IIE+  C KL+ L        +  L+++ + 
Sbjct: 812 EELHL-RRVDLETFSELQTHLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEEIEIS 870

Query: 571 ECDELK 576
            CD L+
Sbjct: 871 YCDSLQ 876

Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score =  170 bits (430), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 162/593 (27%), Positives = 271/593 (45%), Gaps = 89/593 (15%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIV--GDSMKTSAFQSIAVEIVGRCGGLPVALITLAKA 58
           M ++ +++++ L K+ A +LF   V   D +++S+ + +A  IV +CGGLP+ALITL  A
Sbjct: 299 MGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLALITLGGA 358

Query: 59  LKN-ESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
           + + E+ + W     ++ + +  E+ GM   V+  +K SYD L S+  +S FL C LF E
Sbjct: 359 MAHRETEEEWIHA-SEVLTRFPAEMKGM-NYVFALLKFSYDNLESDLLRSCFLYCALFPE 416

Query: 118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVI 177
            H+I +  L+ Y +G G+    + V     + + LIG LK+ CLL  GD + +VKMH+V+
Sbjct: 417 EHSIEIEQLVEYWVGEGFLTSSHGVNTI-YKGYFLIGDLKAACLLETGDEKTQVKMHNVV 475

Query: 178 RVVAVSIAEDEHMFN-----IPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPR 232
           R  A+ +A ++  +       P++   E    E  R+  + ISL     Q LP+++ CP+
Sbjct: 476 RSFALWMASEQGTYKELILVEPSMGHTEAPKAENWRQ-ALVISLLDNRIQTLPEKLICPK 534

Query: 233 LGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRL 292
           L   +L        ++   FF  M  L+VL       + +P S+  L+ L  L + G + 
Sbjct: 535 LTTLMLQQNSSLK-KIPTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHLSMSGTK- 592

Query: 293 KDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL 352
                                I  LP E+G LR+L+ LDL     L+ I  + I  LS+L
Sbjct: 593 ---------------------ISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKL 631

Query: 353 EELYMGNSFKRWEKVEGGSNAS----LVELNGLSKLTTLEIHVRYAEILPQDLVSVELQR 408
           E L +  S+  WE    G + +      +L  L  LTTL I V   E L        L +
Sbjct: 632 EVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETLKTLFEFGALHK 691

Query: 409 YKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSV 468
           +                   +  L   +   +L  N                    +PS+
Sbjct: 692 H-------------------IQHLHVEECNELLYFN--------------------LPSL 712

Query: 469 VHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQ 528
               + G    RL    ++SC ++ ++V        +  P LE L L  L NL  +  + 
Sbjct: 713 T---NHGRNLRRLS---IKSCHDLEYLVTPADFEN-DWLPSLEVLTLHSLHNLTRVWGNS 765

Query: 529 LREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGK 581
           + +D    N+R I + HCNKLK++   S  + L  L+ + + +C E++ +I +
Sbjct: 766 VSQD-CLRNIRCINISHCNKLKNV---SWVQKLPKLEVIELFDCREIEELISE 814

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score =  169 bits (429), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 178/608 (29%), Positives = 283/608 (46%), Gaps = 72/608 (11%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
           M + + I++  L ++EA +LF   VG+   +   + IA ++   C GLP+A+IT+ + L+
Sbjct: 261 MMTNENIKVACLQEKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLR 320

Query: 61  NE-SLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGH 119
            +  ++ WK  L  L+ S A  ID  EK ++ ++KLSYDFL+ +  KS FL C LF E +
Sbjct: 321 GKPQVEVWKHTLNLLKRS-APSIDTEEK-IFGTLKLSYDFLQ-DNMKSCFLFCALFPEDY 377

Query: 120 AIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRV 179
           +I V  L+ Y +  G     +  E+  +   TL+ +LK  CLL DGD+ D VKMHDV+R 
Sbjct: 378 SIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRD 437

Query: 180 VAV----SIAEDEHMFNIPNVADLE---KKMEETIRKDPIAISLPYRGDQVLPQRMRCPR 232
            A+    S  E  H   +     +E    K   ++++    +SL     + LP  +    
Sbjct: 438 FAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQR----VSLMANKLERLPNNVIEGV 493

Query: 233 LGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGC-R 291
             L LL        +V + F +    L++L   G+   +LP S   L +L++L L  C +
Sbjct: 494 ETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKK 553

Query: 292 LKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSR 351
           L+++  +  L KL+ L   +S I +LP  +  L  L+ + +SN + L+ I    I +LS 
Sbjct: 554 LRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSS 613

Query: 352 LEELYMGNSFKRW----EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQ 407
           LE L M  S   W    E+ EG   A+L E+  L        H+++  I   D++S   +
Sbjct: 614 LEVLDMAGSAYSWGIKGEEREG--QATLDEVTCLP-------HLQFLAIKLLDVLSFSYE 664

Query: 408 RYKMFIGEARGRWFVKSETSRLMKLERL----KSVS-------------ILLRNPGMRML 450
                           S T RL K + L    +SVS             + + N  +  L
Sbjct: 665 --------------FDSLTKRLTKFQFLFSPIRSVSPPGTGEGCLAISDVNVSNASIGWL 710

Query: 451 LQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRV-GCE---- 505
           LQ    L L   EG+  +   L       + K  +V   +  +H   S+    GCE    
Sbjct: 711 LQHVTSLDLNYCEGLNGMFENL-----VTKSKSSFVAMKALSIHYFPSLSLASGCESQLD 765

Query: 506 VFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFS-MAKNLLWL 564
           +FP LE L L  + NLE+I             L++++V  C +LK LFS   +A  L  L
Sbjct: 766 LFPNLEELSLDNV-NLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNL 824

Query: 565 QKVGVEEC 572
           Q++ V  C
Sbjct: 825 QEIKVVSC 832

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG90|DRL33_ARATH Probable disease resistance protein At5g43740 OS=Arabidopsis thaliana GN=At5g43740 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 163/350 (46%), Gaps = 52/350 (14%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSA--FQSIAVEIVGRCGGLPVALITLAKA 58
           M + K+I++  LS +EA +LF+  VGD +  S     ++A  +  +C GLP+AL  + KA
Sbjct: 296 MKADKQIKVACLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKA 355

Query: 59  LK-NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
           +   E++  W   +  L S+   E  GME+ +   +K SYD L++ E K  FL C LF E
Sbjct: 356 MSCKETIQEWSHAINVLNSA-GHEFPGMEERILPILKFSYDSLKNGEIKLCFLYCSLFPE 414

Query: 118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVI 177
              IP    + Y +  G+       +   +  + +IG L    LL++ +  D VKMHDVI
Sbjct: 415 DSEIPKEKWIEYWICEGFINPNRYEDGGTNHGYDIIGLLVRAHLLIECELTDNVKMHDVI 474

Query: 178 RVVAVSIAED-------------EHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQV- 223
           R +A+ I  D              H+  IPN  + E           I  ++ +   Q+ 
Sbjct: 475 REMALWINSDFGKQQETICVKSGAHVRMIPNDINWE-----------IVRTMSFTCTQIK 523

Query: 224 -LPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINL 282
            +  R +CP L   L+    L  +++S+ FF  M  L VL         L ++LD LI L
Sbjct: 524 KISCRSKCPNLSTLLILDNRLL-VKISNRFFRFMPKLVVL--------DLSANLD-LIKL 573

Query: 283 QTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL 332
                         ++  L  L+ L+   + I+ LP+ + +LR+L  L+L
Sbjct: 574 P------------EEISNLGSLQYLNISLTGIKSLPVGLKKLRKLIYLNL 611

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  108 bits (269), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 161/327 (49%), Gaps = 33/327 (10%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSM--KTSAFQSIAVEIVGRCGGLPVALITLAKA 58
           M     +++  L   EA +LF+  VG++          +A ++ G+C GLP+AL  + + 
Sbjct: 302 MRVDDPMEVSCLEPNEAWELFQMKVGENTLKGHPDIPELARKVAGKCCGLPLALNVIGET 361

Query: 59  LKNESL-DTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
           +  + +   W++ +  L SSYA E  GME+ +   +K SYD L  E+ K  FL C LF E
Sbjct: 362 MACKRMVQEWRNAIDVL-SSYAAEFPGMEQ-ILPILKYSYDNLNKEQVKPCFLYCSLFPE 419

Query: 118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLL-DGDAEDEVKMHDV 176
            + +    L+ Y +  G+  E  + E A S+ + +IG L   CLLL +   +++VKMHDV
Sbjct: 420 DYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRACLLLEEAINKEQVKMHDV 479

Query: 177 IRVVAVSIAED--EH-----------MFNIPNVADLEKKMEETIRKDPIAISLPYRGDQV 223
           +R +A+ IA D  EH           +  +P V +       ++R+    +SL     ++
Sbjct: 480 VREMALWIASDLGEHKERCIVQVGVGLREVPKVKNW-----SSVRR----MSLMENEIEI 530

Query: 224 LPQRMRCPRL-GLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGS-SSLPSSLDRLIN 281
           L     C  L  LFL     L  + +SD FF  +  L VL   G  S   LP+ + +L++
Sbjct: 531 LSGSPECLELTTLFLQKNDSL--LHISDEFFRCIPMLVVLDLSGNSSLRKLPNQISKLVS 588

Query: 282 LQTLCLDGCRLKDI-AKVGQLKKLEVL 307
           L+ L L    +K +   + +LKKL  L
Sbjct: 589 LRYLDLSWTYIKRLPVGLQELKKLRYL 615

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score =  108 bits (269), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 175/374 (46%), Gaps = 33/374 (8%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSA--FQSIAVEIVGRCGGLPVALITLAKA 58
           M + K+I++D LS +EA +LF+  VGD +  S     ++A  +  +C GLP+AL  + KA
Sbjct: 297 MKADKQIKVDCLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKA 356

Query: 59  LK-NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
           +   E++  W+  +  L S   K   GME+ +   +K SYD L++ E K  FL C LF E
Sbjct: 357 MVCKETVQEWRHAINVLNSPGHK-FPGMEERILPILKFSYDSLKNGEIKLCFLYCSLFPE 415

Query: 118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVI 177
              I    L+ Y +  GY       +   ++ + +IG L    LL++ +  D+VKMHDVI
Sbjct: 416 DFEIEKDKLIEYWICEGYINPNRYEDGGTNQGYDIIGLLVRAHLLIECELTDKVKMHDVI 475

Query: 178 RVVAVSIAED-------------EHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVL 224
           R +A+ I  D              H+  IPN         E +R+    +SL     + +
Sbjct: 476 REMALWINSDFGNQQETICVKSGAHVRLIPNDISW-----EIVRQ----MSLISTQVEKI 526

Query: 225 PQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGS-SSLPSSLDRLINLQ 283
                CP L   LL    L  I V   FF  M  L VL      S   LP  +  L +LQ
Sbjct: 527 ACSPNCPNLSTLLLPYNKLVDISVG--FFLFMPKLVVLDLSTNWSLIELPEEISNLGSLQ 584

Query: 284 TLCLDGCRLKDI-AKVGQLKKLEVLSFRDSDI-EQLPLEIGQLRRLQLLDLSNCWTLEVI 341
            L L    +K +   + +L+KL  L+   +++ E L      L  LQ+L L   ++L  +
Sbjct: 585 YLNLSLTGIKSLPVGLKKLRKLIYLNLEFTNVLESLVGIATTLPNLQVLKL--FYSLFCV 642

Query: 342 APNVISKLSRLEEL 355
              ++ +L RL+ L
Sbjct: 643 DDIIMEELQRLKHL 656

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 175/367 (47%), Gaps = 40/367 (10%)

Query: 1   MNSQKEIQIDVLSKEEALQLFK-KIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKAL 59
           M + ++I++  LS+ +A  LF  K+  D +  +    IA +IV +C GLP+AL  + K +
Sbjct: 302 MRANEDIEVQCLSENDAWDLFDMKVHCDGL--NEISDIAKKIVAKCCGLPLALEVIRKTM 359

Query: 60  KNES-LDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEG 118
            ++S +  W+  L  L S Y  E+ G EK ++  +KLSYD+L+++ AK  FL C LF + 
Sbjct: 360 ASKSTVIQWRRALDTLES-YRSEMKGTEKGIFQVLKLSYDYLKTKNAKC-FLYCALFPKA 417

Query: 119 HAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIR 178
           + I    L+ Y +G G+  E    E A+ R + +I  L    LLL+ +   +V MHD+IR
Sbjct: 418 YYIKQDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAGLLLESNK--KVYMHDMIR 475

Query: 179 VVAVSIAE------------DEHMFNIPNVADLE--KKM---EETIRKDPIAISLPYRGD 221
            +A+ I              D  +  +P+V D     KM      I+  P     P + +
Sbjct: 476 DMALWIVSEFRDGERYVVKTDAGLSQLPDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTN 535

Query: 222 QV---LPQRMRCPRLGLFLLHTIGLCSIQVSDHF--------FEGMEGLKVLQFPGIGSS 270
            V   L        +G F L    L  + +S +F           +  L++L   G    
Sbjct: 536 LVTLFLQNNRLVDIVGKFFLVMSTLVVLDLSWNFQITELPKGISALVSLRLLNLSGTSIK 595

Query: 271 SLPSSLDRLINLQTLCLDGC-RLKDIAKVGQLKKLEVLSFRDS--DIEQLPLEI-GQLRR 326
            LP  L  L  L  L L+    L+ +  + +L+KL+VL F  S   ++   L+I  QL+ 
Sbjct: 596 HLPEGLGVLSKLIHLNLESTSNLRSVGLISELQKLQVLRFYGSAAALDCCLLKILEQLKG 655

Query: 327 LQLLDLS 333
           LQLL ++
Sbjct: 656 LQLLTVT 662

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=3 SV=2

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 106/190 (55%), Gaps = 4/190 (2%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSA--FQSIAVEIVGRCGGLPVALITLAKA 58
           M    E+++D L  +EA +LF+K VG     S     ++A ++  +C GLP+AL  + KA
Sbjct: 299 MEVDGEMKVDCLPPDEAWELFQKKVGPIPLQSHEDIPTLARKVAEKCCGLPLALSVIGKA 358

Query: 59  LKN-ESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
           + + E++  W+ V+  L SS + E   ME+ +   +K SYD L+ E+ K  FL C LF E
Sbjct: 359 MASRETVQEWQHVIHVLNSS-SHEFPSMEEKILPVLKFSYDDLKDEKVKLCFLYCSLFPE 417

Query: 118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVI 177
            + +    L+ Y M  G+       + A ++ H +IG L    LL+DG+   +VKMHDVI
Sbjct: 418 DYEVRKEELIEYWMCEGFIDGNEDEDGANNKGHDIIGSLVRAHLLMDGELTTKVKMHDVI 477

Query: 178 RVVAVSIAED 187
           R +A+ IA +
Sbjct: 478 REMALWIASN 487

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score =  107 bits (267), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 153/597 (25%), Positives = 242/597 (40%), Gaps = 102/597 (17%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTS--AFQSIAVEIVGRCGGLPVALITLAKA 58
           M   K +Q+  L  E+A +LFK  VGD+   S      +A E+  +C GLP+AL  + + 
Sbjct: 299 MGDHKPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVGLAREVAQKCRGLPLALSCIGET 358

Query: 59  LKNESL-DTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
           + ++++   W+  +  L  S A E   M+  +   +K SYD L  E  KS FL C LF E
Sbjct: 359 MASKTMVQEWEHAIDVLTRS-AAEFSDMQNKILPILKYSYDSLEDEHIKSCFLYCALFPE 417

Query: 118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLD--GDAEDEVKMHD 175
              I    L+   +  G+  E   ++ AR++ + ++G L    LL +  G  +  V MHD
Sbjct: 418 DDKIDTKTLINKWICEGFIGEDQVIKRARNKGYEMLGTLIRANLLTNDRGFVKWHVVMHD 477

Query: 176 VIRVVAVSIAEDEHMFNIPNVADLEKKMEETIRKDPIAI-SLPYRGDQVLPQRM------ 228
           V+R +A+ IA           +D  K+ E  + +  + +  +P   D    +RM      
Sbjct: 478 VVREMALWIA-----------SDFGKQKENYVVRARVGLHEIPKVKDWGAVRRMSLMMNE 526

Query: 229 --------RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFP-GIGSSSLPSSLDRL 279
                   +C  L    L +  L ++  S  F   M+ L VL        + LP  +  L
Sbjct: 527 IEEITCESKCSELTTLFLQSNQLKNL--SGEFIRYMQKLVVLDLSHNPDFNELPEQISGL 584

Query: 280 INLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLE 339
           ++LQ L L   R                      IEQLP+ + +L++L  L+L  C+T  
Sbjct: 585 VSLQYLDLSWTR----------------------IEQLPVGLKELKKLIFLNL--CFTER 620

Query: 340 VIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQ 399
           + +      +S +  L         E    G  + L EL  L  L  L I    AE++  
Sbjct: 621 LCS------ISGISRLLSLRWLSLRESNVHGDASVLKELQQLENLQDLRI-TESAELISL 673

Query: 400 DLVSVELQRYKMFIGEARGRWFVKS--ETSRLMKLERLKSVSILLRNP-----GMRMLLQ 452
           D      QR    I   R   F++   + S L  +E L    +L+ N       ++    
Sbjct: 674 D------QRLAKLISVLRIEGFLQKPFDLSFLASMENL--YGLLVENSYFSEINIKCRES 725

Query: 453 RTEDLWLETLEGVPSVV----------HELDDGEGF---PRLKHLYVESCSEILHIVGSV 499
            TE  +L     +P             H + D       P L +L +    E+  I+   
Sbjct: 726 ETESSYLHINPKIPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEIINKE 785

Query: 500 RRVG----CEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHL 552
           + +        F  LE L+L GL  LE+I  S L     F  L  I V++C KL+ L
Sbjct: 786 KAINLTSIITPFQKLERLFLYGLPKLESIYWSPL----PFPLLSNIVVKYCPKLRKL 838

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K0|DRL5_ARATH Probable disease resistance protein At1g51480 OS=Arabidopsis thaliana GN=At1g51480 PE=2 SV=2

 Score =  106 bits (264), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 150/326 (46%), Gaps = 30/326 (9%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSA--FQSIAVEIVGRCGGLPVALITLAKA 58
           M +  +I++  LS +EA +LF+  V D + +S     ++A  +  +C GLP+ALI + +A
Sbjct: 298 MKADMQIKVSCLSPDEAWELFRITVDDVILSSHEDIPALARIVAAKCHGLPLALIVIGEA 357

Query: 59  LK-NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
           +   E++  W   +  L S    +  GME+ + L +K SYD L++ E K  FL C LF E
Sbjct: 358 MACKETIQEWHHAINVLNSPAGHKFPGMEERILLVLKFSYDSLKNGEIKLCFLYCSLFPE 417

Query: 118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVI 177
              I    L+ Y +  GY       +   ++ + +IG L    LL++ +   +VKMH VI
Sbjct: 418 DFEIEKEKLIEYWICEGYINPNRYEDGGTNQGYDIIGLLVRAHLLIECELTTKVKMHYVI 477

Query: 178 RVVAVSIAED-------------EHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVL 224
           R +A+ I  D              H+  IPN  +      E +R+    +SL     + +
Sbjct: 478 REMALWINSDFGKQQETICVKSGAHVRMIPNDINW-----EIVRQ----VSLISTQIEKI 528

Query: 225 PQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQF-PGIGSSSLPSSLDRLINLQ 283
               +C  L   LL    L +I V   FF  M  L VL     +    LP  +  L +LQ
Sbjct: 529 SCSSKCSNLSTLLLPYNKLVNISVG--FFLFMPKLVVLDLSTNMSLIELPEEISNLCSLQ 586

Query: 284 TLCLDGCRLKDIAKVGQLKKLEVLSF 309
            L L    +K +   G +KKL  L +
Sbjct: 587 YLNLSSTGIKSLP--GGMKKLRKLIY 610

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	582
255563252	1603	Disease resistance protein RPS5, putativ	0.974	0.353	0.468	1e-125
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.974	0.431	0.448	1e-122
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.958	0.226	0.465	1e-120
224125154	949	cc-nbs-lrr resistance protein [Populus t	0.974	0.597	0.452	1e-119
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.974	0.423	0.459	1e-118
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.981	0.337	0.441	1e-118
298204947	774	unnamed protein product [Vitis vinifera]	0.972	0.731	0.432	1e-114
224143316	1337	cc-nbs-lrr resistance protein [Populus t	0.974	0.424	0.448	1e-114
359488103	1530	PREDICTED: disease resistance protein At	0.981	0.373	0.429	1e-114
359487926	2087	PREDICTED: uncharacterized protein LOC10	0.972	0.271	0.432	1e-114

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 274/585 (46%), Positives = 384/585 (65%), Gaps = 18/585 (3%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
           M  QK  +++VL +EEAL LF+ +VGD +K   FQS A E+  +C GLPV ++T+A+ALK
Sbjct: 299 MGVQKVFRLEVLQEEEALSLFEMMVGD-VKGGEFQSAASEVTKKCAGLPVLIVTIARALK 357

Query: 61  NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHA 120
           N+ L  WKD ++QL     +EI   ++ VY +++LSY+ L   E KSLFLLCGL  +   
Sbjct: 358 NKDLYVWKDAVKQLSRCDNEEI---QEKVYSALELSYNHLIGAEVKSLFLLCGLLGKSD- 413

Query: 121 IPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVV 180
           I +  LL Y  G+G FK + T+ +AR+RVH LI  LK+ CLLLD D +  VK+HDV+R V
Sbjct: 414 IAILDLLMYSTGLGLFKGIDTLGDARNRVHKLISDLKAACLLLDSDIKGRVKIHDVVRDV 473

Query: 181 AVSIAED-EHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLH 239
           A+SIA   +H+F + N A L++   + + K    ISLPY     LP+ + CP L LFLL 
Sbjct: 474 AISIASRMQHLFTVRNGALLKEWPNKDVCKSCTRISLPYNDIHGLPEVLECPELELFLLF 533

Query: 240 TIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVG 299
           T  + S++V D  FE  + L+VL F G+  SSLP SL  L NL TLCLD C L+D+A +G
Sbjct: 534 TQDI-SLKVPDLCFELTKNLRVLNFTGMHFSSLPPSLGFLKNLFTLCLDWCALRDVAIIG 592

Query: 300 QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
           +L  L +LSF+ SDI +LP EI QL +L+ LDLS+C  L+VI   +IS+L++LEELYM N
Sbjct: 593 ELTGLTILSFKHSDIVELPREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQLEELYMNN 652

Query: 360 SFKRW--EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEAR 417
           SF  W  + +    NASL EL  L  LTTLEI V  A+ILP+DL   +L+R+++FIG+  
Sbjct: 653 SFDLWDVQGINNQRNASLAELECLPYLTTLEICVLDAKILPKDLFFRKLERFRIFIGDV- 711

Query: 418 GRWFVKSE--TSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDG 475
             W    +  TSR +KL +L + SI L + G+ +LL+ TEDL+L  ++G+ SV+++L D 
Sbjct: 712 --WSGTGDYGTSRTLKL-KLNTSSIHLEH-GLSILLEVTEDLYLAEVKGIKSVLYDL-DS 766

Query: 476 EGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSF 535
           +GF +LKHL V++  EI +I+   RR  C  FP+LE+LYL  L +LE ICC +L    SF
Sbjct: 767 QGFTQLKHLDVQNDPEIQYIIDPNRRSPCNAFPILESLYLDNLMSLEKICCGKLTTG-SF 825

Query: 536 SNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIG 580
           S LR + V  C++LK+LFSFSM + LL LQ++ V +C  L+ I+ 
Sbjct: 826 SKLRSLTVVKCDRLKNLFSFSMMRCLLQLQQMKVVDCANLEEIVA 870

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 264/588 (44%), Positives = 380/588 (64%), Gaps = 21/588 (3%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
           M S +   I VL   EA  LF+K+VG ++K  + + +A E+  RC GLP+ L T+A+ALK
Sbjct: 292 MGSNRNFPIQVLPASEAWNLFEKMVGVAVKKHSVRLVAAEVARRCAGLPILLATVARALK 351

Query: 61  NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHA 120
           N+ L  WK  L+QL + + K  D ++  VYL ++LSY  LR +E KSLFLLCG     + 
Sbjct: 352 NKDLYAWKKALKQL-TRFDK--DDIDDQVYLGLELSYKSLRGDEIKSLFLLCGQLRSNN- 407

Query: 121 IPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVV 180
           I +  LLRYG+G+  FK   T+EE R+ + TL+ +LK+ CLLL+GD +  VKMHDV+   
Sbjct: 408 ILISDLLRYGIGLDLFKGCSTLEETRNSLLTLVDELKASCLLLEGDKDGSVKMHDVVHSF 467

Query: 181 AVSIAEDEHMFNIPNVADLEKKMEET-IRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLH 239
           A+S+A  +H  ++  VAD  K+     + +   AISLP+R    LP  + CP L  FLL 
Sbjct: 468 AISVALRDH--HVLTVADEFKEWPANDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLL 525

Query: 240 TIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVG 299
                S+Q+ D FF  M+ LK+L    +  S LPSSL  L NLQTLCLD C L+DI+ +G
Sbjct: 526 NKD-PSLQIPDSFFREMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCVLEDISIIG 584

Query: 300 QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
           +L KL+VLS   S+I +LP EIG++ RLQLLDLSNC  LEVI+PN +S L+RLE+LYMGN
Sbjct: 585 ELNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTRLEDLYMGN 644

Query: 360 SFKRWEKVEGGS----NASLVELNGLSKLTTLEIHVRYAEILPQDLVSV--ELQRYKMFI 413
           SF +WE  EG S    NA L EL  LS L+TL + +  A+ +P+DL S    L+R+++FI
Sbjct: 645 SFVKWE-TEGSSSQRNNACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQNLERFRIFI 703

Query: 414 GEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELD 473
           G+    W VK  TSR +K   LK  +++    G+  LL+ TE+L L+ L GV S++++L 
Sbjct: 704 GDGWD-WSVKDATSRTLK---LKLNTVIQLEEGVNTLLKITEELHLQELNGVKSILNDL- 758

Query: 474 DGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQ 533
           DGEGFP+L+HL+V++C  + +I+ S+R      F  L++L+L  L NLE IC  QL   +
Sbjct: 759 DGEGFPQLRHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNLEKICHGQLMA-E 817

Query: 534 SFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGK 581
           S  NLRI++VE C++LK+LFS SMA+ L+ L+++ + +C  ++ ++ +
Sbjct: 818 SLGNLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAE 865

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 269/578 (46%), Positives = 371/578 (64%), Gaps = 20/578 (3%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
           M+ Q+   + VL  EEA QLF+K  G+ +K      IA +I  +C GLPV ++ +A ALK
Sbjct: 250 MDVQRHFLLRVLQDEEAWQLFEKKAGE-VKDPTLHPIATQIARKCAGLPVLIVAVATALK 308

Query: 61  NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHA 120
           N+ L  W+D L  L + + KE  G E + Y ++KLSY+FL +EE KSLF+LCG   + H 
Sbjct: 309 NKELCEWRDALEDL-NKFDKE--GYEAS-YTALKLSYNFLGAEE-KSLFVLCGQL-KAHY 362

Query: 121 IPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVV 180
           I V  LL+Y +G+G F +  TV+ AR+R+  ++  LK  CLLL+GD +DEV+MHDV+   
Sbjct: 363 IVVSDLLKYSLGLGLFNQRTTVKAARNRLLKVVNDLKRSCLLLEGDDDDEVRMHDVVHNF 422

Query: 181 AVSIAE-DEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLH 239
           A  +A  D H+F +   + LE+  E+ I +   AISLP      LP+   CP L  FLL+
Sbjct: 423 ATLVASRDHHVFAVACDSGLEEWPEKDILEQFTAISLPDCKIPKLPEVFECPDLQSFLLY 482

Query: 240 TIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVG 299
                S+++ D+FF  M+ LK++    +  S +P SL  L NLQTLCLD C L+DIA +G
Sbjct: 483 NKD-SSLKIPDNFFSRMKKLKLMDLSNVHLSPMPLSLQCLENLQTLCLDRCTLEDIAAIG 541

Query: 300 QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
           +LKKL+VLSF  S + QLP E+G+L RLQLLDLS C  LEVI   V+S L++LEELYMGN
Sbjct: 542 ELKKLQVLSFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEVIPKGVLSCLTKLEELYMGN 601

Query: 360 SFKRWEKVEGG---SNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA 416
           SF +WE  E     +NASL EL  L  L TLE+H+  AEILP+D+ S +L  YK+FIGE 
Sbjct: 602 SFVQWESEEHDGDRNNASLDELKLLPNLVTLELHIINAEILPRDVFSEKLDLYKVFIGE- 660

Query: 417 RGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGE 476
              WF K E SR +KL+   S+ I      +++LL  TEDL+L+ LEGV +V++EL DG+
Sbjct: 661 EWSWFGKYEASRTLKLKLNSSIEI----EKVKVLLMTTEDLYLDELEGVRNVLYEL-DGQ 715

Query: 477 GFPRLKHLYVESCSEILHIVGSVRRVGCEV-FPLLETLYLIGLANLETICCSQLREDQSF 535
           GFP+LKHL++++ SEI +IV  +      + FP LE+L +  L NL  IC  QL    SF
Sbjct: 716 GFPQLKHLHIQNSSEIQYIVDCLSMGNHYIAFPRLESLLVDNLNNLGQICYGQLMSG-SF 774

Query: 536 SNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD 573
           S LR ++VEHCN LK+LF FSM + L+ L+++ V  C+
Sbjct: 775 SKLRKLKVEHCNALKNLFYFSMFRGLVQLEEIDVSSCN 812

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125154|ref|XP_002319513.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857889|gb|EEE95436.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 265/586 (45%), Positives = 373/586 (63%), Gaps = 19/586 (3%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
           M ++K   + VL + EA  LFKK+ GD +K    Q +AVEI  RC GLP+ ++T+A  LK
Sbjct: 296 MVTKKVFWLQVLPENEAWNLFKKMAGDVVKYPDLQLVAVEIAKRCAGLPILIVTVAGTLK 355

Query: 61  NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHA 120
           +  L  WKD L +L+     + D M+  V  +++LSYD L+ EE KS+FLLCG   E H+
Sbjct: 356 DGDLSEWKDALVRLKRF---DKDEMDSRVCSALELSYDSLKGEEIKSVFLLCGQL-EPHS 411

Query: 121 IPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVV 180
           I +  LL+Y +G+G FK + T+EEAR+R+H L+  LK+ CLLL+G A+  VKMHDV+   
Sbjct: 412 IAILDLLKYTVGLGLFKRISTLEEARNRLHRLVNDLKASCLLLEGGADGIVKMHDVVHGF 471

Query: 181 AVSIAE-DEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLH 239
           A  +A  D H+F +   +D   K    + +   AISLP      LP+ +  P+   F+L+
Sbjct: 472 AAFVASRDHHVFTL--ASDTVLKEWPDMPEQCSAISLPRCKIPGLPEVLNFPKAESFILY 529

Query: 240 TIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVG 299
                S+++ D  F+G + L+++    +   +LPSSL  L  LQTLCLD C LKDIA +G
Sbjct: 530 NED-PSLKIPDSLFKGTKTLQLVDMTAVQLPTLPSSLQFLEKLQTLCLDSCGLKDIAMIG 588

Query: 300 QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
           +LK L+VLS  DS+I +LP EIGQL RLQLLDLSN   LE+I PNV+S L++LE+LYM N
Sbjct: 589 ELKMLKVLSLIDSNIVRLPREIGQLTRLQLLDLSNNPRLEMIPPNVLSCLTQLEDLYMEN 648

Query: 360 SFKRWEKVEG----GSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGE 415
           SF +W ++EG     +NASL EL  L  L+TL +H+    ILP+D  S +L+R+K+ IGE
Sbjct: 649 SFLQW-RIEGLDSQRNNASLAELKYLPNLSTLHLHITDPMILPRDFFSKKLERFKILIGE 707

Query: 416 ARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDG 475
               W  K ETS  MKL+   S+       G+++LL+RTEDL L+ L+GV SV +EL DG
Sbjct: 708 GWD-WSRKRETSTTMKLKISASIQ---SEEGIQLLLKRTEDLHLDGLKGVKSVSYEL-DG 762

Query: 476 EGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSF 535
           +GFPRLKHL++++  EI +IV S        FPLLE+L L  L  LE IC SQ    +SF
Sbjct: 763 QGFPRLKHLHIQNSLEIRYIVDSTMLSPSIAFPLLESLSLDNLNKLEKICNSQPVA-ESF 821

Query: 536 SNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGK 581
           SNLRI++VE C  LK+LFS  M + LL L+ + + +C  +++I+ +
Sbjct: 822 SNLRILKVESCPMLKNLFSLHMERGLLQLEHISIIDCKIMEVIVAE 867

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 270/588 (45%), Positives = 377/588 (64%), Gaps = 21/588 (3%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
           M + +  Q+ VL   EA   F+K+VG ++K  + Q +A E+  RC GLP+ L T+A+ALK
Sbjct: 292 MGANRNFQVQVLPVREAWNFFEKMVGVTVKNPSVQPVAAEVAKRCAGLPILLATVARALK 351

Query: 61  NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHA 120
           NE L  WKD L+QL      EID     VY  ++LSY  LR +E KSLFLLCG F   + 
Sbjct: 352 NEDLYAWKDALKQLTRFDKDEIDN---QVYSCLELSYKALRGDEIKSLFLLCGQFL-TYD 407

Query: 121 IPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVV 180
             +  LL+Y +G+  FK   T+EEAR+R+ TL+ +LK+ CLLL+GD +  VKMHDV++  
Sbjct: 408 SSISDLLKYAIGLDLFKGRSTLEEARNRLRTLVDELKASCLLLEGDKDGRVKMHDVVQSF 467

Query: 181 AVSIAEDEHMFNIPNVADLEKKMEET-IRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLH 239
           A S+A  +H   I  VAD  K+   + + +   AISLPYR    LP  + CP L  F+L 
Sbjct: 468 AFSVASRDHHVLI--VADEFKEWPTSDVLQQYTAISLPYRKIPDLPAILECPNLNSFILL 525

Query: 240 TIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVG 299
                S+Q+ D+FF  M+ LKVL    +  S LPSSL  L NLQTLCLDGC L+DI+ VG
Sbjct: 526 NKD-PSLQIPDNFFREMKELKVLDLTRVNLSPLPSSLQFLENLQTLCLDGCVLEDISIVG 584

Query: 300 QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
           +LKKL+VLS   SDI  LP EIG+L RL LLDLSNC  LEVI+PNV+S L+RLEELYMGN
Sbjct: 585 ELKKLKVLSLISSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGN 644

Query: 360 SFKRWEKVEGGS----NASLVELNGLSKLTTLEIHVRYAEILPQDLVSV--ELQRYKMFI 413
           SF +WE  EG S    NA L EL  LS L TL + +  A+ + +DL  +  +L+R+++FI
Sbjct: 645 SFVKWE-TEGSSSQRNNACLSELKRLSNLITLHMQITDADNMLKDLSFLFQKLERFRIFI 703

Query: 414 GEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELD 473
           G+    W VK  TSR +K   LK  +++     +  LL+ TE+L L+ L+GV S++++L 
Sbjct: 704 GDGWD-WSVKYATSRTLK---LKLNTVIQLEEWVNTLLKSTEELHLQELKGVKSILNDL- 758

Query: 474 DGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQ 533
           DGE FPRLKHL+V++C  + +I+ S+R      F  L++L+L  L NLE IC  QL   +
Sbjct: 759 DGEDFPRLKHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNLEKICHGQLMA-E 817

Query: 534 SFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGK 581
           S   LRI++VE C++LK+LFS SMA+ L+ L+++ + +C  ++ ++ +
Sbjct: 818 SLGKLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAE 865

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 261/591 (44%), Positives = 372/591 (62%), Gaps = 20/591 (3%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
           M++QK+ ++  L ++E   LFK   GDS++    Q IAV++   C GLP+A++T+AKALK
Sbjct: 294 MSTQKDFRVQHLQEDETWILFKNTAGDSIENPELQPIAVDVAKECAGLPIAIVTVAKALK 353

Query: 61  NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHA 120
           N+++  WKD L+QL S  +  I GME  VY S+KLSY+ L  +E KSLFLLCGLFS  + 
Sbjct: 354 NKNVSIWKDALQQLNSQTSTNITGMETKVYSSLKLSYEHLEGDEVKSLFLLCGLFS--NY 411

Query: 121 IPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVV 180
           I +  LL+YGMG+  F+   T+EEA++R+ TL+  LKS  LLL+      V+MHDV+R V
Sbjct: 412 IYIRDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDNLKSSNLLLETGHNAVVRMHDVVRSV 471

Query: 181 AVSIA-EDEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQV----LPQRMRCPRLGL 235
           A+ I+ +D H+F +        ++E+  R D +   +    D+     LP+ + CP+L L
Sbjct: 472 ALDISSKDHHVFTLQQTTG---RVEKWPRIDELQKVIWVNQDECDIHELPEGLVCPKLKL 528

Query: 236 FLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDI 295
           F+       ++++ + FFEGM+ L+VL F  +   SLPSSL  L NLQTL L GC+L DI
Sbjct: 529 FICCLKTNSAVKIPNTFFEGMKQLQVLDFTQMHLPSLPSSLQCLANLQTLLLYGCKLGDI 588

Query: 296 AKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEEL 355
             + +LKKLE+LS  DSDIEQLP EI QL  L+LLDLS+  T++VI   VIS LS+LE+L
Sbjct: 589 GIITELKKLEILSLIDSDIEQLPREIAQLTHLRLLDLSDSSTIKVIPSGVISSLSQLEDL 648

Query: 356 YMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGE 415
            M NSF +WE  EG SNA L EL  LS LT+L+I +  A++LP+D+V   L RY++F+G+
Sbjct: 649 CMENSFTQWEG-EGKSNACLAELKHLSHLTSLDIQIPDAKLLPKDVVFENLVRYRIFVGD 707

Query: 416 ARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDG 475
               W    +T+R +KL++  +   L+   G+  LL+ TEDL L  L G  +V+ +L DG
Sbjct: 708 V-WIWEENYKTNRTLKLKKFDTSLHLVD--GISKLLKITEDLHLRELCGGTNVLSKL-DG 763

Query: 476 EGFPRLKHLYVESCSEILHIVGSVRRVGCE-VFPLLETLYLIGLANLETICCSQL----R 530
           EGF +LKHL VES  EI +IV S+        FP++ETL L  L NL+ +C  Q      
Sbjct: 764 EGFFKLKHLNVESSPEIQYIVNSLDLTSPHGAFPVMETLSLNQLINLQEVCHGQFPVESS 823

Query: 531 EDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGK 581
             QSF  LR +EVE C+ LK LFS S+A+ L  L+++ V  C  +  ++ +
Sbjct: 824 RKQSFGCLRKVEVEDCDGLKFLFSLSVARGLSQLEEIKVTRCKSMVEMVSQ 874

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204947|emb|CBI34254.3| unnamed protein product [Vitis vinifera]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/587 (43%), Positives = 365/587 (62%), Gaps = 21/587 (3%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
           M +Q+   +  L   EA  LFKK+  DS++    +  A +++ +C GLP+A++ +AKAL 
Sbjct: 131 MGTQENFAVGHLPPGEAWSLFKKMTSDSIEKRDLKPTAEKVLEKCAGLPIAIVIVAKALN 190

Query: 61  NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHA 120
            +    WKD LRQL  S    + G+E  ++L+++LSY+ L S E KS FLLCGL   G  
Sbjct: 191 GKDPIAWKDALRQLTRSIETTVKGIEAKIFLTLELSYNSLYSNEVKSFFLLCGLLPYGDT 250

Query: 121 IPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVV 180
            P+  L +YG+G+ +F+ + ++EEA  R+HTLI  LK+  LLL+ D ++ V+MHD++R V
Sbjct: 251 -PIDNLFKYGVGLDWFQNINSLEEAWDRLHTLIDNLKASSLLLESDDDECVRMHDIVRDV 309

Query: 181 AVSIA-EDEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLH 239
           A  IA +D H F +     LE+  +    K    ISL  R    LP+ + CP+L   LL 
Sbjct: 310 ARGIASKDPHRFVVREDDRLEEWSKTDESKSCTFISLNCRAAHELPKCLVCPQLKFCLLD 369

Query: 240 TIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVG 299
           +    S+ + + FFEGM+GLKVL    +  ++LPSSLD L NLQTLCLDGC L DIA +G
Sbjct: 370 SNN-PSLNIPNTFFEGMKGLKVLDLSYMCFTTLPSSLDSLANLQTLCLDGCTLVDIALIG 428

Query: 300 QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
           +L KL+VLS R S I+QLP E+ QL  L+LLDL+ CW LEVI  N++S LSRLE LYM N
Sbjct: 429 KLTKLQVLSLRRSTIQQLPNEMVQLTNLRLLDLNYCWELEVIPRNILSSLSRLECLYM-N 487

Query: 360 SFKRWEKVEGGSNASLVELNGLSKLT--TLEIHVRYAEILPQDLVSVE-LQRYKMFIGEA 416
            F +W  +EG SNA L ELN LS+LT   L++H+   ++LP++   +E L RY +FIG+ 
Sbjct: 488 RFTQW-AIEGESNACLSELNHLSRLTILDLDLHIPDIKLLPKEYTFLEKLTRYSIFIGDW 546

Query: 417 RGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGE 476
               + K  TSR +KL  +     L    G+  LL++TE+L L  L G  S+ +ELD  E
Sbjct: 547 GSYQYCK--TSRTLKLNEVDRS--LYVGDGIGKLLKKTEELVLRKLIGTKSIPYELD--E 600

Query: 477 GFPRLKHLYVESCSEILHIVGS----VRRVGCEVFPLLETLYLIGLANLETICCSQLRED 532
           GF  LKHL+V +  EI +++ S    V++ G   FPLLE+L L  L NLE +CC  +   
Sbjct: 601 GFCELKHLHVSASPEIQYVIDSKDQRVQQHG--AFPLLESLILDELINLEEVCCGPIPV- 657

Query: 533 QSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMII 579
           + F NL+ ++VE C+ LK LF  SMA+ LL L+K+ ++ C+ ++ I+
Sbjct: 658 KFFDNLKTLDVEKCHGLKFLFLLSMARGLLQLEKIEIKSCNVIQQIV 704

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 264/588 (44%), Positives = 380/588 (64%), Gaps = 21/588 (3%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
           M + +  QI +L   EA   F+K+VG ++K  + Q +A E+  RC GLP+ L T+A+ALK
Sbjct: 292 MGANRNFQIQILPVREAWNFFEKMVGVTVKNPSVQLVAAEVAKRCAGLPILLATVARALK 351

Query: 61  NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHA 120
           NE L  WK+ L QL + + K  D ++K  Y  ++LSY  LR +E KSLFLLCG      A
Sbjct: 352 NEDLYAWKEALTQL-TRFDK--DDIDKTAYSCLELSYKALRDDEIKSLFLLCGQILTYDA 408

Query: 121 IPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVV 180
           + +  LL+Y +G+  FK   T EEAR+R+HTL+ +LK+ CLLL+GD +  VKMHDV+R  
Sbjct: 409 L-ISDLLKYAIGLDLFKGRSTSEEARNRLHTLVDELKASCLLLEGDNDGSVKMHDVVRSF 467

Query: 181 AVSIAEDEHMFNIPNVADLEKKMEET-IRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLH 239
           A+S+A  +H   I  VAD  K+     + +   AISLP+R    LP  + CP L  FLL 
Sbjct: 468 AISVALRDHHVLI--VADEFKEWPTNDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLL 525

Query: 240 TIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVG 299
           +    S+Q+ ++FF  M+ LKVL   G+  S LPSSL  L NLQTLCLD C L+DI+ VG
Sbjct: 526 STDP-SLQIPENFFREMKELKVLDLTGVNLSPLPSSLQFLENLQTLCLDFCVLEDISIVG 584

Query: 300 QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
           +LKKL+VLS   SDI  LP EIG+L RL LLDLSNC  LEVI+PNV+S L+RLEELYMGN
Sbjct: 585 ELKKLKVLSLMGSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGN 644

Query: 360 SFKRWEKVEGGS----NASLVELNGLSKLTTLEIHVRYAEILPQDLVSV--ELQRYKMFI 413
           SF +WE  EG S    +A L EL  L+ L TL++ +  A+ +P+DL     +L+R+++FI
Sbjct: 645 SFLKWE-AEGPSSERNSACLSELKLLANLITLDMQITDADHMPKDLFLCFQKLERFRIFI 703

Query: 414 GEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELD 473
           G+    W VK  TSR +K   LK  +++     +  LL+ TE+L L+ L GV S++++LD
Sbjct: 704 GDGWD-WSVKYATSRTLK---LKLNTVIQLEERVNTLLKITEELHLQELNGVKSILNDLD 759

Query: 474 DGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQ 533
           + EGF +LK L+V++C  + +I+ S+R      F  L++L+L  L NLE IC  QL   +
Sbjct: 760 E-EGFCQLKDLHVQNCPGVQYIINSMRMGPRTAFLNLDSLFLENLDNLEKICHGQLMA-E 817

Query: 534 SFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGK 581
           S  NLRI++VE C++LK+LFS S+A+ ++ L+++ + +C  ++ ++ +
Sbjct: 818 SLGNLRILKVESCHRLKNLFSVSIARRVVRLEEITIIDCKIMEEVVAE 865

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488103|ref|XP_002263579.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/585 (42%), Positives = 361/585 (61%), Gaps = 14/585 (2%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
           M++QK+ ++  L ++E   LFK   GDS++    Q IAV++   C GLP+A++T+AKALK
Sbjct: 294 MSTQKDFRVRHLQEDETWILFKNTAGDSIENPELQPIAVDVAKECAGLPIAIVTVAKALK 353

Query: 61  NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHA 120
           N+++  WKD L+QL+S  +  I GME  VY S+KLSY+ L  +E KSL LLCGLFS    
Sbjct: 354 NKNVSIWKDALQQLKSQTSTNITGMETKVYSSLKLSYEHLEGDEVKSLCLLCGLFS--RY 411

Query: 121 IPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVV 180
           I +  LL+YG+G+  F+   T+EE ++R+ TL+  LKS   LL+      V+MHD++R  
Sbjct: 412 IHIRDLLKYGVGLRLFQGTNTLEEVKNRIDTLVDNLKSSNFLLETGRNAVVRMHDLVRST 471

Query: 181 AVSIAEDEHMFNIPNVADLEKKMEETIRKDPIAIS---LPYRGDQVLPQRMRCPRLGLFL 237
           A  IA ++H  ++        ++EE  R D + ++   L +     LP+ + CP+L  F 
Sbjct: 472 ARKIASEQH--HVFTHQKTTVRVEEWSRIDELQVTWVKLHHCDIHELPEGLVCPKLEFFE 529

Query: 238 LHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAK 297
                  ++++ + FFEGM+ LKVL   G+   SLP SL  L NL+TLCLDGC+L DI  
Sbjct: 530 CFLKTNLAVKIPNTFFEGMKQLKVLDLTGMQLPSLPLSLQSLANLRTLCLDGCKLGDIVI 589

Query: 298 VGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM 357
           + +LKKLE+LS  DSDIEQLP EI QL  L+L DL + + L+VI  +VIS L RLE+L M
Sbjct: 590 IAELKKLEILSLMDSDIEQLPREIAQLTHLRLFDLKSSFKLKVIPSDVISSLFRLEDLCM 649

Query: 358 GNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEAR 417
            NSF +WE  EG SNA L EL  LS LT L+I +  A++LP+D+V   L RY++F+G+  
Sbjct: 650 ENSFTQWEG-EGKSNACLAELKHLSHLTALDIQIPDAKLLPKDMVFDNLMRYRIFVGDI- 707

Query: 418 GRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEG 477
             W    +T+R++KL +  +   L+   G+  LL+RTEDL L  L G  +V+ +L+  EG
Sbjct: 708 WIWEKNYKTNRILKLNKFDTSLHLVD--GISKLLKRTEDLHLRELCGGTNVLSKLNR-EG 764

Query: 478 FPRLKHLYVESCSEILHIVGSVRRVGCE-VFPLLETLYLIGLANLETICCSQLREDQSFS 536
           F +LKHL VES  EI +IV S+        FP++ETL L  L NL+ +C  Q     SF 
Sbjct: 765 FLKLKHLNVESSPEIQYIVNSMDLTSSHAAFPVMETLSLNQLINLQEVCHGQFPAG-SFG 823

Query: 537 NLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMIIGK 581
            LR +EVE C+ LK LFS S+A+ L  L++  V  C  +  ++ +
Sbjct: 824 CLRKVEVEDCDGLKFLFSLSVARGLSRLEETKVTRCKSMVEMVSQ 868

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487926|ref|XP_002270338.2| PREDICTED: uncharacterized protein LOC100248775 [Vitis vinifera]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/587 (43%), Positives = 365/587 (62%), Gaps = 21/587 (3%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
           M +Q+   +  L   EA  LFKK+  DS++    +  A +++ +C GLP+A++ +AKAL 
Sbjct: 293 MGTQENFAVGHLPPGEAWSLFKKMTSDSIEKRDLKPTAEKVLEKCAGLPIAIVIVAKALN 352

Query: 61  NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHA 120
            +    WKD LRQL  S    + G+E  ++L+++LSY+ L S E KS FLLCGL   G  
Sbjct: 353 GKDPIAWKDALRQLTRSIETTVKGIEAKIFLTLELSYNSLYSNEVKSFFLLCGLLPYGDT 412

Query: 121 IPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVV 180
            P+  L +YG+G+ +F+ + ++EEA  R+HTLI  LK+  LLL+ D ++ V+MHD++R V
Sbjct: 413 -PIDNLFKYGVGLDWFQNINSLEEAWDRLHTLIDNLKASSLLLESDDDECVRMHDIVRDV 471

Query: 181 AVSIA-EDEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLH 239
           A  IA +D H F +     LE+  +    K    ISL  R    LP+ + CP+L   LL 
Sbjct: 472 ARGIASKDPHRFVVREDDRLEEWSKTDESKSCTFISLNCRAAHELPKCLVCPQLKFCLLD 531

Query: 240 TIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVG 299
           +    S+ + + FFEGM+GLKVL    +  ++LPSSLD L NLQTLCLDGC L DIA +G
Sbjct: 532 SNN-PSLNIPNTFFEGMKGLKVLDLSYMCFTTLPSSLDSLANLQTLCLDGCTLVDIALIG 590

Query: 300 QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
           +L KL+VLS R S I+QLP E+ QL  L+LLDL+ CW LEVI  N++S LSRLE LYM N
Sbjct: 591 KLTKLQVLSLRRSTIQQLPNEMVQLTNLRLLDLNYCWELEVIPRNILSSLSRLECLYM-N 649

Query: 360 SFKRWEKVEGGSNASLVELNGLSKLT--TLEIHVRYAEILPQDLVSVE-LQRYKMFIGEA 416
            F +W  +EG SNA L ELN LS+LT   L++H+   ++LP++   +E L RY +FIG+ 
Sbjct: 650 RFTQW-AIEGESNACLSELNHLSRLTILDLDLHIPDIKLLPKEYTFLEKLTRYSIFIGDW 708

Query: 417 RGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGE 476
               + K  TSR +KL  +     L    G+  LL++TE+L L  L G  S+ +ELD  E
Sbjct: 709 GSYQYCK--TSRTLKLNEVDRS--LYVGDGIGKLLKKTEELVLRKLIGTKSIPYELD--E 762

Query: 477 GFPRLKHLYVESCSEILHIVGS----VRRVGCEVFPLLETLYLIGLANLETICCSQLRED 532
           GF  LKHL+V +  EI +++ S    V++ G   FPLLE+L L  L NLE +CC  +   
Sbjct: 763 GFCELKHLHVSASPEIQYVIDSKDQRVQQHG--AFPLLESLILDELINLEEVCCGPIPV- 819

Query: 533 QSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMII 579
           + F NL+ ++VE C+ LK LF  SMA+ LL L+K+ ++ C+ ++ I+
Sbjct: 820 KFFDNLKTLDVEKCHGLKFLFLLSMARGLLQLEKIEIKSCNVIQQIV 866

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	582
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.963	0.569	0.271	4e-46
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.953	0.603	0.261	3.4e-33
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.663	0.424	0.258	8.3e-31
TAIR|locus:2171579	843	AT5G47250 [Arabidopsis thalian	0.884	0.610	0.262	8.2e-21
TAIR|locus:2170902	862	AT5G43740 [Arabidopsis thalian	0.907	0.612	0.248	1.8e-19
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.895	0.582	0.263	4.1e-19
TAIR|locus:2170892	848	AT5G43730 [Arabidopsis thalian	0.594	0.408	0.284	4.4e-19
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.594	0.406	0.276	2.8e-18
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.599	0.458	0.269	3.6e-18
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.594	0.389	0.276	6.1e-17

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.0e-46, P = 4.0e-46
 Identities = 163/601 (27%), Positives = 289/601 (48%)

Query:     1 MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
             M +  ++++D L +E+A +LF K  GD +++   + IA  +   CGGLP+A+IT+  A++
Sbjct:   291 MKTDLDVRVDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAMR 350

Query:    61 NE-SLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGH 119
              + ++  W  VL +L  S    I  +E+ ++  +KLSYDFL  ++AK  FLLC LF E +
Sbjct:   351 GKKNVKLWNHVLSKLSKS-VPWIKSIEEKIFQPLKLSYDFLE-DKAKFCFLLCALFPEDY 408

Query:   120 AIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTXXXXXXXXXXXXXXXAEDEVKMHDVIRV 179
             +I V  ++RY M  G+ +E+ + E++ +   T                 D VKMHDV+R 
Sbjct:   409 SIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRD 468

Query:   180 VAV----SIAEDEH--MFNIPNVADLEK-KMEETIRKDPIAISLPYRGDQVLPQRMR--C 230
              A+    S  +D H  + +   + D+ + K+  ++R+    +SL     + LP  +   C
Sbjct:   469 FAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRR----VSLMNNKLESLPDLVEEFC 524

Query:   231 PRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFXXXXXXXXXX-XXDRLINLQTLCLDG 289
              +  + LL    L   +V   F +    L++L                RL +L +L L  
Sbjct:   525 VKTSVLLLQGNFLLK-EVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRD 583

Query:   290 C-RLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISK 348
             C +L  +  +  L KLE+L    + I + P  + +L+R + LDLS    LE I   V+S+
Sbjct:   584 CFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSR 643

Query:   349 LSRLEELYMGNSFKRWEKVEGGSN---ASLVELNGLSKLTTLEIHVRYAEIL--PQDLVS 403
             LS LE L M +S  RW  V+G +    A++ E+  L +L  L I +  +  L   ++   
Sbjct:   644 LSSLETLDMTSSHYRWS-VQGETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWI 702

Query:   404 VELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLE 463
               L+++++ +G    R+ +++   +     RL    + +    +  LL  T  L L   +
Sbjct:   703 KRLKKFQLVVGS---RYILRTRHDK----RRLTISHLNVSQVSIGWLLAYTTSLALNHCQ 755

Query:   464 GVPSVVHEL-DDGEGFPRLKHLYVESC-----SEILHIVGSVRRVGCEVFPLLETLYLIG 517
             G+ +++ +L  D +GF  LK L +E+      S +  +  +  +   ++  LL  L  + 
Sbjct:   756 GIEAMMKKLVSDNKGFKNLKSLTIENVIINTNSWVEMVSTNTSKQSSDILDLLPNLEELH 815

Query:   518 L--ANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDEL 575
             L   +LET    Q         L+IIE+  C KL+ L        +  L+++ +  CD L
Sbjct:   816 LRRVDLETFSELQTHLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEEIEISYCDSL 875

Query:   576 K 576
             +
Sbjct:   876 Q 876

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 3.4e-33, P = 3.4e-33
 Identities = 156/597 (26%), Positives = 269/597 (45%)

Query:     1 MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
             M + + I++  L ++EA +LF   VG+   +   + IA ++   C GLP+A+IT+ + L+
Sbjct:   261 MMTNENIKVACLQEKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLR 320

Query:    61 NE-SLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGH 119
              +  ++ WK  L  L+ S A  ID  EK ++ ++KLSYDFL+ +  KS FL C LF E +
Sbjct:   321 GKPQVEVWKHTLNLLKRS-APSIDTEEK-IFGTLKLSYDFLQ-DNMKSCFLFCALFPEDY 377

Query:   120 AIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTXXXXXXXXXXXXXXXAEDEVKMHDVIRV 179
             +I V  L+ Y +  G     +  E+  +   T               + D VKMHDV+R 
Sbjct:   378 SIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRD 437

Query:   180 VAV----SIAEDEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGL 235
              A+    S  E  H   +     +E   ++ +      +SL     + LP  +    +  
Sbjct:   438 FAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQ-RVSLMANKLERLPNNV-IEGVET 495

Query:   236 FLLHTIGLCSI-QVSDHFFEGMEGLKVLQFXXXXXXXXXXXXDRLINLQTLCLDGCR-LK 293
              +L   G   + +V + F +    L++L                L +L++L L  C+ L+
Sbjct:   496 LVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLR 555

Query:   294 DIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLE 353
             ++  +  L KL+ L   +S I +LP  +  L  L+ + +SN + L+ I    I +LS LE
Sbjct:   556 NLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLE 615

Query:   354 ELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE-IHVRYAEILPQ----DLVSVELQR 408
              L M  S   W  ++G        L+ ++ L  L+ + ++  ++L      D ++  L +
Sbjct:   616 VLDMAGSAYSWG-IKGEEREGQATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLTKRLTK 674

Query:   409 YKMFIGEARGRWFVKSETSRLMKLERLKSVS-ILLRNPGMRMLLQRTEDLWLETLEGVPS 467
             ++      R    V    +     E   ++S + + N  +  LLQ    L L   EG+  
Sbjct:   675 FQFLFSPIRS---VSPPGTG----EGCLAISDVNVSNASIGWLLQHVTSLDLNYCEGLNG 727

Query:   468 VVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRV-GCE----VFPLLETLYLIGLANLE 522
             +   L       + K  +V   +  +H   S+    GCE    +FP LE L L  + NLE
Sbjct:   728 MFENL-----VTKSKSSFVAMKALSIHYFPSLSLASGCESQLDLFPNLEELSLDNV-NLE 781

Query:   523 TICCSQLRE--DQSFSNLRIIEVEHCNKLKHLFSFS-MAKNLLWLQKVGVEECDELK 576
             +I   +L          L++++V  C +LK LFS   +A  L  LQ++ V  C  L+
Sbjct:   782 SI--GELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSCLRLE 836

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 8.3e-31, Sum P(2) = 8.3e-31
 Identities = 106/410 (25%), Positives = 191/410 (46%)

Query:     1 MNSQKEIQIDVLSKEEALQLFKKIVG--DSMKTSAFQSIAVEIVGRCGGLPVALITLAKA 58
             M ++ +++++ L K+ A +LF   V   D +++S+ + +A  IV +CGGLP+ALITL  A
Sbjct:   299 MGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLALITLGGA 358

Query:    59 LKN-ESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
             + + E+ + W      L + +  E+ GM   V+  +K SYD L S+  +S FL C LF E
Sbjct:   359 MAHRETEEEWIHASEVL-TRFPAEMKGMNY-VFALLKFSYDNLESDLLRSCFLYCALFPE 416

Query:   118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTXXXXXXXXXXXXXXXAEDEVKMHDVI 177
              H+I +  L+ Y +G G+    + V     + +                 + +VKMH+V+
Sbjct:   417 EHSIEIEQLVEYWVGEGFLTSSHGVNTIY-KGYFLIGDLKAACLLETGDEKTQVKMHNVV 475

Query:   178 RVVAVSIAEDEHMFNI-----PNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPR 232
             R  A+ +A ++  +       P++   E    E  R+  + ISL     Q LP+++ CP+
Sbjct:   476 RSFALWMASEQGTYKELILVEPSMGHTEAPKAENWRQ-ALVISLLDNRIQTLPEKLICPK 534

Query:   233 LGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFXXXXXXXXXXXXDRLINLQTLCLDGCRL 292
             L   +L        ++   FF  M  L+VL                L+ L  L + G ++
Sbjct:   535 LTTLMLQQNSSLK-KIPTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHLSMSGTKI 593

Query:   293 KDIAK-VGQLKKLEVLSF-RDSDIEQLPLE-IGQLRRLQLLDLSNC---WTLEVIAPNVI 346
               + + +G L+KL+ L   R   ++ +P + I  L +L++L+L      W L+    +  
Sbjct:   594 SVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAGWELQSFGEDEA 653

Query:   347 SKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEI 396
              +L   +  Y+ N         G +  SL  L  L +   L  H+++  +
Sbjct:   654 EELGFADLEYLENL-----TTLGITVLSLETLKTLFEFGALHKHIQHLHV 698

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2171579 AT5G47250 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 8.2e-21, P = 8.2e-21
 Identities = 150/571 (26%), Positives = 250/571 (43%)

Query:     1 MNSQKEIQIDVLSKEEALQLFK-KIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKAL 59
             M + ++I++  LS+ +A  LF  K+  D +  +    IA +IV +C GLP+AL  + K +
Sbjct:   302 MRANEDIEVQCLSENDAWDLFDMKVHCDGL--NEISDIAKKIVAKCCGLPLALEVIRKTM 359

Query:    60 KNES-LDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEG 118
              ++S +  W+  L  L S Y  E+ G EK ++  +KLSYD+L+++ AK  FL C LF + 
Sbjct:   360 ASKSTVIQWRRALDTLES-YRSEMKGTEKGIFQVLKLSYDYLKTKNAKC-FLYCALFPKA 417

Query:   119 HAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTXXXXXXXXXXXXXXXAEDEVKMHDVIR 178
             + I    L+ Y +G G+  E    E A+ R +                +  +V MHD+IR
Sbjct:   418 YYIKQDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAGLLLE--SNKKVYMHDMIR 475

Query:   179 VVA---VSIAEDEHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCP-RLG 234
              +A   VS   D   + +   A L +  + T       +SL     + +P     P +  
Sbjct:   476 DMALWIVSEFRDGERYVVKTDAGLSQLPDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTN 535

Query:   235 LFLLHTIGLCSIQVSDHFFEGMEGLKVLQFXXXXXXXXX-XXXDRLINLQTLCLDGCRLK 293
             L  L       + +   FF  M  L VL                 L++L+ L L G  +K
Sbjct:   536 LVTLFLQNNRLVDIVGKFFLVMSTLVVLDLSWNFQITELPKGISALVSLRLLNLSGTSIK 595

Query:   294 DIAK-VGQLKKLEVLSFRD-SDIEQLPLEIGQLRRLQLLDL-SNCWTLEVIAPNVISKLS 350
              + + +G L KL  L+    S++  + L I +L++LQ+L    +   L+     ++ +L 
Sbjct:   596 HLPEGLGVLSKLIHLNLESTSNLRSVGL-ISELQKLQVLRFYGSAAALDCCLLKILEQLK 654

Query:   351 RLEELYMG-NSFKRWEKVEGGSNASLVELNGLSKLTTLE-IHVRYAEILPQDLVSV-ELQ 407
              L+ L +  N+    E+  G +      L G+++   LE + V +A I    L S+ +L+
Sbjct:   655 GLQLLTVTVNNDSVLEEFLGSTR-----LAGMTQGIYLEGLKVSFAAI--GTLSSLHKLE 707

Query:   408 RYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVP- 466
                  I E+   W  K    R        S  I   NP            W + L  V  
Sbjct:   708 MVNCDITESGTEWEGKR---RDQYSPSTSSSEITPSNP------------WFKDLSAVVI 752

Query:   467 -SVVHELDDGEGF---PRLKHLYVESCSEILHIVGSVRR--VGCEVFPLLETLYLIGLAN 520
              S +H L D         L+ L VES  ++  ++   +   VG + F  L+ L L  L  
Sbjct:   753 NSCIH-LKDLTWLMYAANLESLSVESSPKMTELINKEKAQGVGVDPFQELQVLRLHYLKE 811

Query:   521 LETICCSQLREDQSFSNLRI--IEVEHCNKL 549
             L +I  SQ+    SF  L++  +++E+C  L
Sbjct:   812 LGSIYGSQV----SFPKLKLNKVDIENCPNL 838

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2170902 AT5G43740 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 141/568 (24%), Positives = 238/568 (41%)

Query:     1 MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSA--FQSIAVEIVGRCGGLPVALITLAKA 58
             M + K+I++  LS +EA +LF+  VGD +  S     ++A  +  +C GLP+AL  + KA
Sbjct:   296 MKADKQIKVACLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKA 355

Query:    59 LK-NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
             +   E++  W   +  L S+   E  GME+ +   +K SYD L++ E K  FL C LF E
Sbjct:   356 MSCKETIQEWSHAINVLNSA-GHEFPGMEERILPILKFSYDSLKNGEIKLCFLYCSLFPE 414

Query:   118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTXXXXXXXXXXXXXXXAEDEVKMHDVI 177
                IP    + Y +  G+       +   +  +                  D VKMHDVI
Sbjct:   415 DSEIPKEKWIEYWICEGFINPNRYEDGGTNHGYDIIGLLVRAHLLIECELTDNVKMHDVI 474

Query:   178 RVVAVSIAED--EHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQV--LPQRMRCPRL 233
             R +A+ I  D  +    I   +    +M        I  ++ +   Q+  +  R +CP L
Sbjct:   475 REMALWINSDFGKQQETICVKSGAHVRMIPNDINWEIVRTMSFTCTQIKKISCRSKCPNL 534

Query:   234 GLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFXXXXXXXXX-XXXDRLINLQTLCLDGCRL 292
                L+    L  +++S+ FF  M  L VL                 L +LQ L +    +
Sbjct:   535 STLLILDNRLL-VKISNRFFRFMPKLVVLDLSANLDLIKLPEEISNLGSLQYLNISLTGI 593

Query:   293 KDIAKVG--QLKKLEVLSFRDSDIEQLPLEIGQ-LRRLQLLDLS-NCWTLEVIAPNVISK 348
             K +  VG  +L+KL  L+   + +    + I   L  LQ+L    +C  ++ I    +  
Sbjct:   594 KSLP-VGLKKLRKLIYLNLEFTGVHGSLVGIAATLPNLQVLKFFYSCVYVDDILMKELQD 652

Query:   349 LSRLEELYMG-NSFKRWEKVEGGSN-ASLVELNGLSKLTTLEIHVRYAEILPQDLVSVEL 406
             L  L+ L          E+++G    AS +    L  ++T  + +  + I    L  + +
Sbjct:   653 LEHLKILTANVKDVTILERIQGDDRLASSIRSLCLEDMSTPRVIL--STIALGGLQQLAI 710

Query:   407 QRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVP 466
                   I E R  W  K E   L   E L S      +PG + L      +++  LEG  
Sbjct:   711 LMCN--ISEIRIDWESK-ERRELSPTEILPSTG----SPGFKQL----STVYINQLEGQR 759

Query:   467 SVVHELDDGEGFPRLKHLYVESCSEILHIV-G-SVRRVGCEV---FPLLETLYLIGLANL 521
              +   L   +   +L+  +     EI++   G ++ ++  ++   F  LE L L  +A+L
Sbjct:   760 DLSWLLY-AQNLKKLEVCWSPQIEEIINKEKGMNITKLHRDIVVPFGNLEDLALRQMADL 818

Query:   522 ETICCSQLREDQSFSNLRIIEVEHCNKL 549
               IC +     ++  NLR   +  C KL
Sbjct:   819 TEICWNY----RTLPNLRKSYINDCPKL 842

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 4.1e-19, P = 4.1e-19
 Identities = 150/570 (26%), Positives = 248/570 (43%)

Query:     1 MNSQKEIQIDVLSKEEALQLFKKIVGDS-MKTSA-FQSIAVEIVGRCGGLPVALITLAKA 58
             M     +++  L   EA +LF+  VG++ +K       +A ++ G+C GLP+AL  + + 
Sbjct:   302 MRVDDPMEVSCLEPNEAWELFQMKVGENTLKGHPDIPELARKVAGKCCGLPLALNVIGET 361

Query:    59 LK-NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
             +     +  W++ +  L SSYA E  GME+ + + +K SYD L  E+ K  FL C LF E
Sbjct:   362 MACKRMVQEWRNAIDVL-SSYAAEFPGMEQILPI-LKYSYDNLNKEQVKPCFLYCSLFPE 419

Query:   118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTXXXXXXXXXXXXXXXA-EDEVKMHDV 176
              + +    L+ Y +  G+  E  + E A S+ +                  +++VKMHDV
Sbjct:   420 DYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRACLLLEEAINKEQVKMHDV 479

Query:   177 IRVVAVSIAED--EHMFN-IPNVADLEKKMEETIRKDPIA-ISLPYRGDQVLPQRMRCPR 232
             +R +A+ IA D  EH    I  V    +++ +      +  +SL     ++L     C  
Sbjct:   480 VREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSPECLE 539

Query:   233 LG-LFLLHTIGLCSIQVSDHFFEGMEGLKVLQFXXXXXXXXX-XXXDRLINLQTLCLDGC 290
             L  LFL     L  + +SD FF  +  L VL                +L++L+ L L   
Sbjct:   540 LTTLFLQKNDSL--LHISDEFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWT 597

Query:   291 RLKDIAKVG--QLKKLEVLSF----RDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPN 344
              +K +  VG  +LKKL  L      R   I  +   I  LR+LQLL      +L++   +
Sbjct:   598 YIKRLP-VGLQELKKLRYLRLDYMKRLKSISGIS-NISSLRKLQLLQSK--MSLDM---S 650

Query:   345 VISKLSRLEELYMGN-SFKRWEKVEGGSNAS-LVELNGLSKLTTLEIHVRYAEILPQDLV 402
             ++ +L  LE L + N S K    VE   NA  LV+   +  L  ++        LP D+ 
Sbjct:   651 LVEELQLLEHLEVLNISIKSSLVVEKLLNAPRLVKCLQILVLRGVQEESSGVLTLP-DMD 709

Query:   403 SVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETL 462
             ++     K+ I +  G   +K        +ER K++S+          L     + + + 
Sbjct:   710 NLN----KVIIRKC-GMCEIK--------IER-KTLSLSSNRSPKTQFLHNLSTVHISSC 755

Query:   463 EGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLE 522
             +G+  +   L        L+ L  E    I++   ++   G   F  LE+L L  LA L 
Sbjct:   756 DGLKDLTWLLF-APNLTSLEVLDSELVEGIINQEKAMTMSGIIPFQKLESLRLHNLAMLR 814

Query:   523 TICCSQLREDQSFSNLRIIEVEHCNKLKHL 552
             +I    L    SF  L+ I +  C +L+ L
Sbjct:   815 SIYWQPL----SFPCLKTIHITKCPELRKL 840

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
 Identities = 105/369 (28%), Positives = 165/369 (44%)

Query:     1 MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSA--FQSIAVEIVGRCGGLPVALITLAKA 58
             M + K+I++D LS +EA +LF+  VGD +  S     ++A  +  +C GLP+AL  + KA
Sbjct:   297 MKADKQIKVDCLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKA 356

Query:    59 LK-NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
             +   E++  W+  +  L S   K   GME+ +   +K SYD L++ E K  FL C LF E
Sbjct:   357 MVCKETVQEWRHAINVLNSPGHK-FPGMEERILPILKFSYDSLKNGEIKLCFLYCSLFPE 415

Query:   118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTXXXXXXXXXXXXXXXAEDEVKMHDVI 177
                I    L+ Y +  GY       +   ++ +                  D+VKMHDVI
Sbjct:   416 DFEIEKDKLIEYWICEGYINPNRYEDGGTNQGYDIIGLLVRAHLLIECELTDKVKMHDVI 475

Query:   178 RVVAVSIAED----EHMFNIPNVADLEKKMEETIRKDPIA-ISLPYRGDQVLPQRMRCPR 232
             R +A+ I  D    +    + + A + + +   I  + +  +SL     + +     CP 
Sbjct:   476 REMALWINSDFGNQQETICVKSGAHV-RLIPNDISWEIVRQMSLISTQVEKIACSPNCPN 534

Query:   233 LGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFXXXXXXXXX-XXXDRLINLQTLCLDGCR 291
             L   LL    L  I V   FF  M  L VL                 L +LQ L L    
Sbjct:   535 LSTLLLPYNKLVDISVG--FFLFMPKLVVLDLSTNWSLIELPEEISNLGSLQYLNLSLTG 592

Query:   292 LKDIAKVGQLKKLEVLSFRDSDIEQLPLE--IG---QLRRLQLLDLSNCWTLEVIAPNVI 346
             +K +  VG LKKL  L + + +   + LE  +G    L  LQ+L L   ++L  +   ++
Sbjct:   593 IKSLP-VG-LKKLRKLIYLNLEFTNV-LESLVGIATTLPNLQVLKLF--YSLFCVDDIIM 647

Query:   347 SKLSRLEEL 355
              +L RL+ L
Sbjct:   648 EELQRLKHL 656

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 102/369 (27%), Positives = 165/369 (44%)

Query:     1 MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSA--FQSIAVEIVGRCGGLPVALITLAKA 58
             M    E+++D L  +EA +LF+K VG     S     ++A ++  +C GLP+AL  + KA
Sbjct:   299 MEVDGEMKVDCLPPDEAWELFQKKVGPIPLQSHEDIPTLARKVAEKCCGLPLALSVIGKA 358

Query:    59 LKN-ESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
             + + E++  W+ V+  L SS + E   ME+ +   +K SYD L+ E+ K  FL C LF E
Sbjct:   359 MASRETVQEWQHVIHVLNSS-SHEFPSMEEKILPVLKFSYDDLKDEKVKLCFLYCSLFPE 417

Query:   118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTXXXXXXXXXXXXXXXAEDEVKMHDVI 177
              + +    L+ Y M  G+       + A ++ H                   +VKMHDVI
Sbjct:   418 DYEVRKEELIEYWMCEGFIDGNEDEDGANNKGHDIIGSLVRAHLLMDGELTTKVKMHDVI 477

Query:   178 RVVAVSIAED-----EHMFNIPNV--ADLEKKME-ETIRKDPIAISLPYRGDQVLPQRMR 229
             R +A+ IA +     E +   P V    + K +  E++R+    +SL       +     
Sbjct:   478 REMALWIASNFGKQKETLCVKPGVQLCHIPKDINWESLRR----MSLMCNQIANISSSSN 533

Query:   230 CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFXXXXXXXXX-XXXDRLINLQTLCLD 288
              P L   LL    L  + +S  FF  M  L VL                +L +LQ + L 
Sbjct:   534 SPNLSTLLLQNNKL--VHISCDFFRFMPALVVLDLSRNSSLSSLPEAISKLGSLQYINLS 591

Query:   289 GCRLKDI-AKVGQLKKLEVLSFRDSD-IEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVI 346
                +K +     +LKKL  L+   +D +E +      L  LQ+L L +  +   I  +++
Sbjct:   592 TTGIKWLPVSFKELKKLIHLNLEFTDELESIVGIATSLPNLQVLKLFS--SRVCIDGSLM 649

Query:   347 SKLSRLEEL 355
              +L  LE L
Sbjct:   650 EELLLLEHL 658

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
 Identities = 98/364 (26%), Positives = 155/364 (42%)

Query:     1 MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTS--AFQSIAVEIVGRCGGLPVALITLAKA 58
             M   K +Q+  L  E+A +LFK  VGD+   S      +A E+  +C GLP+AL  + + 
Sbjct:   187 MGDHKPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVELAREVAQKCRGLPLALSVIGET 246

Query:    59 LKNESL-DTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
             + ++++   W+  +  L  S A E   M   +   +K SYD L  E  KS FL C LF E
Sbjct:   247 MASKTMVQEWEHAIDVLTRS-AAEFSNMGNKILPILKYSYDSLGDEHIKSCFLYCALFPE 305

Query:   118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTXXXXXXXXXXXXXXXAEDEVKMHDVI 177
                I    L+ Y +  G+  E   ++ AR++ +                 E  V MHDV+
Sbjct:   306 DDEIYNEKLIDYWICEGFIGEDQVIKRARNKGYEMLGTLTLANLLTKVGTE-HVVMHDVV 364

Query:   178 RVVAVSIAED----EHMFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRL 233
             R +A+ IA D    +  F +     L ++ E         +SL     + +    +C  L
Sbjct:   365 REMALWIASDFGKQKENFVVRARVGLHERPEAKDWGAVRRMSLMDNHIEEITCESKCSEL 424

Query:   234 GLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFXXXXXXXXX-XXXDRLINLQTLCLDGCRL 292
                 L +  L ++  S  F   M+ L VL                 L++LQ L L    +
Sbjct:   425 TTLFLQSNQLKNL--SGEFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSI 482

Query:   293 KDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAP-NVISKLSR 351
             K +  VG LKKL+ L+F +         I  + RL  L L      +V    +V+ +L +
Sbjct:   483 KQLP-VG-LKKLKKLTFLNLAYTVRLCSISGISRLLSLRLLRLLGSKVHGDASVLKELQK 540

Query:   352 LEEL 355
             L+ L
Sbjct:   541 LQNL 544

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
 Identities = 101/365 (27%), Positives = 159/365 (43%)

Query:     1 MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTS--AFQSIAVEIVGRCGGLPVALITLAKA 58
             M    ++++  L+ ++A  LF K VG+    S     ++A  +  +C GLP+AL  + + 
Sbjct:   300 MGVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGET 359

Query:    59 LK-NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE 117
             +    ++  W+  +  L SS A E  GME  +   +K SYD L+SE+ K  F  C LF E
Sbjct:   360 MAYKRTVQEWRSAIDVLTSS-AAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPE 418

Query:   118 GHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTXXXXXXXXXXXXXXXAEDEVKMHDVI 177
              H I    L+ Y +G G+        +A ++ +                 E  VKMHDV+
Sbjct:   419 DHNIEKNDLVDYWIGEGFIDR--NKGKAENQGYEIIGILVRSCLLMEENQET-VKMHDVV 475

Query:   178 RVVAVSIAED--EHMFNIPNVADLEKKMEETIRKDPIA--ISLPYRGDQVLPQRMRCPRL 233
             R +A+ IA D  +   N    A L+ +    I K  +A  +SL +   + +      P+L
Sbjct:   476 REMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQL 535

Query:   234 GLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFXXXXXXXXX-XXXDRLINLQTLCLDGCRL 292
                LL    L  I  S  FF  M  L VL                  ++LQ L L   R+
Sbjct:   536 ITLLLRKNFLGHI--SSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRI 593

Query:   293 KDIAKVG--QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLS 350
             + I   G  +L+KL  L+   + + +    I  L  L++L L      E   P V+++L 
Sbjct:   594 R-IWPAGLVELRKLLYLNLEYTRMVESICGISGLTSLKVLRLFVSGFPE--DPCVLNELQ 650

Query:   351 RLEEL 355
              LE L
Sbjct:   651 LLENL 655

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	582
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	2e-17
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	9e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.003

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 5   KEIQIDVLSKEEALQLFKKIVGDSM--KTSAFQSIAVEIVGRCGGLPVALITLAKALKNE 62
           K  +++ L  EE+ +LF   V +         + +A EIV +C GLP+AL  L   L  +
Sbjct: 149 KPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFK 208

Query: 63  S-LDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAI 121
           S +  W+ VL QL +  A         V   + LSYD L     K  FL   LF E + I
Sbjct: 209 STVQEWEHVLEQLNNELAGR--DGLNEVLSILSLSYDNLPM-HLKRCFLYLALFPEDYNI 265

Query: 122 PVPYLLRYGMGMGY 135
               L++  +  G+
Sbjct: 266 RKEQLIKLWIAEGF 279

Length = 285

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.2 bits (130), Expect = 9e-08
 Identities = 46/166 (27%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 231 PRLGLFLLHTIGLCSIQVSD-----HFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTL 285
             L L  L ++ L +  ++D        +    LK L        SLPS L  L NL+ L
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGLLK--SNLKELDLSDNKIESLPSPLRNLPNLKNL 168

Query: 286 CLDGCRLKDIAKV-GQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPN 344
            L    L D+ K+   L  L  L    + I  LP EI  L  L+ LDLSN   +E+   +
Sbjct: 169 DLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL--LS 226

Query: 345 VISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
            +S L  L  L + N            N        +  L+ LE  
Sbjct: 227 SLSNLKNLSGLELSN------------NKLEDLPESIGNLSNLETL 260

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 271 SLPSSLDRLINLQTLCLDGCRLKDIAKVGQL--KKLEVLSFRDSDIEQLPLEIGQLRRLQ 328
           S  S L  L NL +L LD   + DI  +  L    L+ L   D+ IE LP  +  L  L+
Sbjct: 107 SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLK 166

Query: 329 LLDLSNCWTLEVIAPNVISKLSRLEELYMGNS 360
            LDLS    L  + P ++S LS L  L +  +
Sbjct: 167 NLDLSFN-DLSDL-PKLLSNLSNLNNLDLSGN 196

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.1 bits (87), Expect = 9e-04
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 281 NLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLP 318
           NL+TL L   ++ D+  +  L  LE L    + I  L 
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 83/358 (23%), Positives = 131/358 (36%), Gaps = 101/358 (28%)

Query: 257 EGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCR-LKDIAKVGQLKKLEVLSFRD-SDI 314
           E L  LQ  G     L   +  L  L+ + L G + LK+I  +     LE L   D S +
Sbjct: 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL 670

Query: 315 EQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNAS 374
            +LP  I  L +L+ LD+S C  LE++   +      L+ LY  N               
Sbjct: 671 VELPSSIQYLNKLEDLDMSRCENLEILPTGI-----NLKSLYRLN--------------- 710

Query: 375 LVELNGLSKL----------TTLEIHVRYAEILPQDLVS---VELQRYKMFIGEARGRWF 421
              L+G S+L          + L++     E  P +L      EL   +M   +   R  
Sbjct: 711 ---LSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER-- 765

Query: 422 VKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRL 481
                             +    P M ML      L    L  +PS+V      +   +L
Sbjct: 766 ------------------VQPLTPLMTMLSPSLTRL---FLSDIPSLVELPSSIQNLHKL 804

Query: 482 KHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLR----------- 530
           +HL +E+C  +  +   +          LE+L L G        CS+LR           
Sbjct: 805 EHLEIENCINLETLPTGIN------LESLESLDLSG--------CSRLRTFPDISTNISD 850

Query: 531 --------ED-----QSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDEL 575
                   E+     + FSNL  +++  CN L+ + S +++K L  L+ V   +C  L
Sbjct: 851 LNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV-SLNISK-LKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	582
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.87
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.76
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.61
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.58
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.54
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.53
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.36
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.32
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.19
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.16
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.84
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.8
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.69
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.68
KOG4341	483	consensus F-box protein containing LRR [General fu	98.63
KOG4341	483	consensus F-box protein containing LRR [General fu	98.55
PLN03150	623	hypothetical protein; Provisional	98.53
PLN03150	623	hypothetical protein; Provisional	98.48
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.38
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.34
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.29
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.27
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.2
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.13
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.11
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.8
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.73
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.67
PRK15386	426	type III secretion protein GogB; Provisional	97.66
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.51
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.46
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.19
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.0
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.92
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.8
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.8
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.77
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.14
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.64
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.58
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.25
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.12
PRK04841	903	transcriptional regulator MalT; Provisional	94.37
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.22
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.88
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.53
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.67
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.54
smart00370	26	LRR Leucine-rich repeats, outliers.	90.54
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.84
smart00370	26	LRR Leucine-rich repeats, outliers.	87.85
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.85
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	84.87
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	84.39

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-61  Score=522.76  Aligned_cols=403  Identities=29%  Similarity=0.403  Sum_probs=319.9

Q ss_pred             CCCcceEEccCCCHHHHHHHHHHhhCCC--CCCcchHHHHHHHHHHhCCcchHHHHHHHHHccC-ChHHHHHHHHHHhcc
Q 048810            1 MNSQKEIQIDVLSKEEALQLFKKIVGDS--MKTSAFQSIAVEIVGRCGGLPVALITLAKALKNE-SLDTWKDVLRQLRSS   77 (582)
Q Consensus         1 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~-~~~~W~~~l~~l~~~   77 (582)
                      ||++.++++++|.++|||+||+++||+.  ..++.+.++|++||++|+|+|||++++|+.|+.| +.++|+++.+.+.+.
T Consensus       306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~  385 (889)
T KOG4658|consen  306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS  385 (889)
T ss_pred             ccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence            7888999999999999999999999943  4556699999999999999999999999999987 888999999999888


Q ss_pred             ccccccchhhhHHHHHHHHHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHHHHH
Q 048810           78 YAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLK  157 (582)
Q Consensus        78 ~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~~L~  157 (582)
                      ...++.++.+.|+++|++|||+||.+ +|.||+|||+|||||+|++++||..||||||+++....+.+++.+++|+.+||
T Consensus       386 ~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV  464 (889)
T KOG4658|consen  386 LAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV  464 (889)
T ss_pred             ccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence            66566667899999999999999966 99999999999999999999999999999999886556778899999999999


Q ss_pred             hccccccCC---CCccEEhhhHHHHHHHHHhc-----cCCeEEcccchhhhHHHH-HhhccCcEEEEecCCCCcCCCCCC
Q 048810          158 SLCLLLDGD---AEDEVKMHDVIRVVAVSIAE-----DEHMFNIPNVADLEKKME-ETIRKDPIAISLPYRGDQVLPQRM  228 (582)
Q Consensus       158 ~~~l~~~~~---~~~~~~mhdl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~~l~~~~  228 (582)
                      .+++++...   ....|+|||+|||||.++++     +++.+....  ......| ...+..+|++++.++.+..++...
T Consensus       465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~--~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~  542 (889)
T KOG4658|consen  465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDG--VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS  542 (889)
T ss_pred             HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECC--cCccccccccchhheeEEEEeccchhhccCCC
Confidence            999998664   45789999999999999999     555333322  1222334 556678999999999999999999


Q ss_pred             CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCC-CCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccE
Q 048810          229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIG-SSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEV  306 (582)
Q Consensus       229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~  306 (582)
                      .+++|++|-+..+......++..+|..|+.||+|||++|. +.++|++|++|.|||||+++++.++. |..+++|++|.+
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY  622 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence            9999999999988323678888999999999999999764 67899999999999999999999999 999999999999


Q ss_pred             EEeeCCC-CCccchhhcCCCCCCEEcccccc-cccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCc
Q 048810          307 LSFRDSD-IEQLPLEIGQLRRLQLLDLSNCW-TLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKL  384 (582)
Q Consensus       307 L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~-~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L  384 (582)
                      |++..+. +..+|.....|++|++|.+..-. ..+..-...+.++.+|+.+.......          .....+..+..|
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~----------~~~e~l~~~~~L  692 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV----------LLLEDLLGMTRL  692 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh----------HhHhhhhhhHHH
Confidence            9999884 44555656669999999987632 11111111134455555555433221          122334444444


Q ss_pred             c----EEEEEecccccCCccc-ccccccEEEEEeccc
Q 048810          385 T----TLEIHVRYAEILPQDL-VSVELQRYKMFIGEA  416 (582)
Q Consensus       385 ~----~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~  416 (582)
                      +    .+.+.++...+.+..+ .+.+|+.|.+..+..
T Consensus       693 ~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  729 (889)
T KOG4658|consen  693 RSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGI  729 (889)
T ss_pred             HHHhHhhhhcccccceeecccccccCcceEEEEcCCC
Confidence            4    2232333333444443 778888888876665

>PLN03210 Resistant to P

Probab=100.00  E-value=3.5e-51  Score=467.04  Aligned_cols=514  Identities=21%  Similarity=0.281  Sum_probs=342.4

Q ss_pred             CCCcceEEccCCCHHHHHHHHHHhhC-CCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHHhcccc
Q 048810            1 MNSQKEIQIDVLSKEEALQLFKKIVG-DSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYA   79 (582)
Q Consensus         1 ~~~~~~~~l~~L~~~~~~~Lf~~~a~-~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~   79 (582)
                      +|++++|+++.|+++|||+||+++|| ...++.++.+++++||++|+|+||||+++|+.|++++.++|++++++++....
T Consensus       340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~  419 (1153)
T PLN03210        340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLD  419 (1153)
T ss_pred             cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCcc
Confidence            36788999999999999999999999 44456679999999999999999999999999999999999999999876433


Q ss_pred             ccccchhhhHHHHHHHHHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHHHHHhc
Q 048810           80 KEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSL  159 (582)
Q Consensus        80 ~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~~L~~~  159 (582)
                             .+|.++|++||++|+.+..|.||+|+|+||.++.++   .+..|+|.+....           ...++.|+++
T Consensus       420 -------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~k  478 (1153)
T PLN03210        420 -------GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDK  478 (1153)
T ss_pred             -------HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhc
Confidence                   689999999999998644799999999999887553   3666777765431           1137789999


Q ss_pred             cccccCCCCccEEhhhHHHHHHHHHhccCC------eEEcccchhhhHHHH--HhhccCcEEEEecCCCCcCCC--C--C
Q 048810          160 CLLLDGDAEDEVKMHDVIRVVAVSIAEDEH------MFNIPNVADLEKKME--ETIRKDPIAISLPYRGDQVLP--Q--R  227 (582)
Q Consensus       160 ~l~~~~~~~~~~~mhdl~~~l~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~l~l~~~~~~~l~--~--~  227 (582)
                      ||++..  .+.++|||++|+||+.+++++.      -+....  +.+....  ......++.+++....+..+.  .  .
T Consensus       479 sLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~--~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF  554 (1153)
T PLN03210        479 SLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDA--KDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAF  554 (1153)
T ss_pred             CCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCH--HHHHHHHHhCcccceeeEEEeccCccceeeecHHHH
Confidence            999764  3579999999999999987432      111111  1111111  122334444444433332111  1  1


Q ss_pred             CCCCCccEE-------------------------------EeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhh
Q 048810          228 MRCPRLGLF-------------------------------LLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL  276 (582)
Q Consensus       228 ~~~~~L~~L-------------------------------~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i  276 (582)
                      .++++|+.|                               .+.++  ....+|..+  .+.+|+.|+++++.+..+|..+
T Consensus       555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~--~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~  630 (1153)
T PLN03210        555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY--PLRCMPSNF--RPENLVKLQMQGSKLEKLWDGV  630 (1153)
T ss_pred             hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC--CCCCCCCcC--CccCCcEEECcCcccccccccc
Confidence            134444444                               44433  333444433  3567777777777777777777


Q ss_pred             hcccCccEEEcCCCC-CCCccccCCCCCccEEEeeCC-CCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccE
Q 048810          277 DRLINLQTLCLDGCR-LKDIAKVGQLKKLEVLSFRDS-DIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEE  354 (582)
Q Consensus       277 ~~L~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~  354 (582)
                      ..+++|++|+++++. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|+.++.+|.. + ++++|+.
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~  708 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYR  708 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCE
Confidence            777777777777764 444556777778888888776 56677777778888888888887777777764 2 6778888


Q ss_pred             EEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc--ccc--------ccccc
Q 048810          355 LYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA--RGR--------WFVKS  424 (582)
Q Consensus       355 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~--------~~~~~  424 (582)
                      |++++|.....        .+ .  ...+|+.|+++++.+..+|..+.+++|+.|.+..+..  .+.        ....+
T Consensus       709 L~Lsgc~~L~~--------~p-~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        709 LNLSGCSRLKS--------FP-D--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             EeCCCCCCccc--------cc-c--ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcc
Confidence            88777753222        11 1  1357788888888888888777777777776643221  000        01112


Q ss_pred             cccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccC
Q 048810          425 ETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGC  504 (582)
Q Consensus       425 ~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  504 (582)
                      +.++.+.+..+..+..+  |.++..+ ++|+.|++++|..++.+|...    .+++|+.|++++|..+..++.       
T Consensus       778 ~sL~~L~Ls~n~~l~~l--P~si~~L-~~L~~L~Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~-------  843 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVEL--PSSIQNL-HKLEHLEIENCINLETLPTGI----NLESLESLDLSGCSRLRTFPD-------  843 (1153)
T ss_pred             ccchheeCCCCCCcccc--ChhhhCC-CCCCEEECCCCCCcCeeCCCC----CccccCEEECCCCCccccccc-------
Confidence            34444445444333222  4444442 556666666655555544322    355666666666655544321       


Q ss_pred             CCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcchHHH
Q 048810          505 EVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMI  578 (582)
Q Consensus       505 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i  578 (582)
                       ..++|+.|++.+ ..++.+|..    .+.+++|+.|++++|++++.+|.  .+..+++|+.+++.+|++|+.+
T Consensus       844 -~~~nL~~L~Ls~-n~i~~iP~s----i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        844 -ISTNISDLNLSR-TGIEEVPWW----IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             -cccccCEeECCC-CCCccChHH----HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccccc
Confidence             124555555555 344444432    56788999999999999999875  3567889999999999988754

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=1.1e-24  Score=249.68  Aligned_cols=337  Identities=16%  Similarity=0.110  Sum_probs=199.8

Q ss_pred             hccCcEEEEecCCCCc-CCCCCC--CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCC-CCChhhhcccCc
Q 048810          207 IRKDPIAISLPYRGDQ-VLPQRM--RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLDRLINL  282 (582)
Q Consensus       207 ~~~~~~~l~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~L~~L  282 (582)
                      ....++.|++++|.+. .+|...  .+++|+.|++++| .....+|.   ..+++|++|++++|.+. .+|..++++++|
T Consensus        91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  166 (968)
T PLN00113         91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSL  166 (968)
T ss_pred             CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence            4456666666666653 444432  5666666666655 22233332   34566666666666664 356666677777


Q ss_pred             cEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCC-ccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCC
Q 048810          283 QTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN  359 (582)
Q Consensus       283 ~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~  359 (582)
                      ++|++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++.+++|++|++++
T Consensus       167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~  245 (968)
T PLN00113        167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVY  245 (968)
T ss_pred             CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcC
Confidence            777777776654  566667777777777766655 56666677777777777665444445544 66677777777766


Q ss_pred             CccccccccCCCccchhhccCCCCccEEEEEecccc-cCCccc-ccccccEEEEEeccc---cccccccccccccceecc
Q 048810          360 SFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE-ILPQDL-VSVELQRYKMFIGEA---RGRWFVKSETSRLMKLER  434 (582)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~~l~~l~l~~  434 (582)
                      |.....        .+..++++++|+.|++++|.+. .+|..+ .+++|+.|+++.+..   .+.+....+.++.+.+..
T Consensus       246 n~l~~~--------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~  317 (968)
T PLN00113        246 NNLTGP--------IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS  317 (968)
T ss_pred             ceeccc--------cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence            654332        4556667777777777766654 344444 566777777655443   223334445555555554


Q ss_pred             cceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccc
Q 048810          435 LKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLY  514 (582)
Q Consensus       435 ~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~  514 (582)
                      +.....+  |.++.. +++|+.|++++|......+..+   +.+++|+.|++++|.-...++.     ....+++|+.|+
T Consensus       318 n~~~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~p~~l---~~~~~L~~L~Ls~n~l~~~~p~-----~~~~~~~L~~L~  386 (968)
T PLN00113        318 NNFTGKI--PVALTS-LPRLQVLQLWSNKFSGEIPKNL---GKHNNLTVLDLSTNNLTGEIPE-----GLCSSGNLFKLI  386 (968)
T ss_pred             CccCCcC--ChhHhc-CCCCCEEECcCCCCcCcCChHH---hCCCCCcEEECCCCeeEeeCCh-----hHhCcCCCCEEE
Confidence            4322221  444444 3677777777766544454443   3667777777776642222221     233456777777


Q ss_pred             ccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810          515 LIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD  573 (582)
Q Consensus       515 l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~  573 (582)
                      +.++.-...++.    ..+.+++|+.|++++|.--..+|.  .+..+++|+.|++++|.
T Consensus       387 l~~n~l~~~~p~----~~~~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~  439 (968)
T PLN00113        387 LFSNSLEGEIPK----SLGACRSLRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNN  439 (968)
T ss_pred             CcCCEecccCCH----HHhCCCCCCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCc
Confidence            776432222222    245788999999999854334553  56789999999998764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=7.5e-25  Score=250.92  Aligned_cols=343  Identities=17%  Similarity=0.146  Sum_probs=214.5

Q ss_pred             hccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCC-CCChhhhcccCccEE
Q 048810          207 IRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLDRLINLQTL  285 (582)
Q Consensus       207 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~L~~L~~L  285 (582)
                      ...++++|++++|.+....+...+++|++|++++| .....+|.. ++.+++|++|++++|.+. .+|..++++++|++|
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  193 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNN-MLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL  193 (968)
T ss_pred             cCCCCCEEECcCCccccccCccccCCCCEEECcCC-cccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence            56788899998888754333446788888988887 333445554 478888899999888875 478888888888888


Q ss_pred             EcCCCCCCC--ccccCCCCCccEEEeeCCCCC-ccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcc
Q 048810          286 CLDGCRLKD--IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFK  362 (582)
Q Consensus       286 ~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~  362 (582)
                      ++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+
T Consensus       194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCee
Confidence            888888776  778888888888888888777 67888888888888888886554556655 78888888888888765


Q ss_pred             ccccccCCCccchhhccCCCCccEEEEEecccc-cCCccc-ccccccEEEEEeccc---cccccccccccccceecccce
Q 048810          363 RWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE-ILPQDL-VSVELQRYKMFIGEA---RGRWFVKSETSRLMKLERLKS  437 (582)
Q Consensus       363 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~~l~~l~l~~~~~  437 (582)
                      ...        .+..+.++++|+.|++++|.+. .+|..+ .+++|+.|++..+..   .+.+....+.++.+.+..+..
T Consensus       273 ~~~--------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        273 SGP--------IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF  344 (968)
T ss_pred             ecc--------CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence            433        3456666777777777766654 334433 566666666654433   122233444555555544432


Q ss_pred             eehccccchHHHhhhcccceeeccccCccccccccc---------------------CCCCCCCCcEEEEeecCCceeee
Q 048810          438 VSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELD---------------------DGEGFPRLKHLYVESCSEILHIV  496 (582)
Q Consensus       438 ~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~---------------------~~~~l~~L~~L~l~~~~~l~~~~  496 (582)
                      ...+  |.++..+ ++|+.|++++|......+..+.                     .++.+++|+.|++.+|.....++
T Consensus       345 ~~~~--p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p  421 (968)
T PLN00113        345 SGEI--PKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP  421 (968)
T ss_pred             cCcC--ChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC
Confidence            2111  3333332 4555555555443322222221                     01245566666666553222221


Q ss_pred             cccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcch
Q 048810          497 GSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDEL  575 (582)
Q Consensus       497 ~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L  575 (582)
                      .     ....+++|+.|+++++ ++......   ....+++|+.|++++|.-...+|..   ...++|+.|++++|.--
T Consensus       422 ~-----~~~~l~~L~~L~Ls~N-~l~~~~~~---~~~~l~~L~~L~L~~n~~~~~~p~~---~~~~~L~~L~ls~n~l~  488 (968)
T PLN00113        422 S-----EFTKLPLVYFLDISNN-NLQGRINS---RKWDMPSLQMLSLARNKFFGGLPDS---FGSKRLENLDLSRNQFS  488 (968)
T ss_pred             h-----hHhcCCCCCEEECcCC-cccCccCh---hhccCCCCcEEECcCceeeeecCcc---cccccceEEECcCCccC
Confidence            1     2345666667776663 23322111   1335777888888887555555532   24577888888777543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=1.1e-26  Score=229.35  Aligned_cols=327  Identities=17%  Similarity=0.167  Sum_probs=229.9

Q ss_pred             hhHHHH--HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh
Q 048810          199 LEKKME--ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS  275 (582)
Q Consensus       199 ~~~~~~--~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~  275 (582)
                      .+...|  .....++.+|++..|++..+.... .++.||++++..|.-....+|.++| .+..|.+||||+|.+.+.|..
T Consensus        43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~  121 (1255)
T KOG0444|consen   43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTN  121 (1255)
T ss_pred             hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchh
Confidence            444555  556788999999999997666544 8999999999998667778999997 799999999999999999999


Q ss_pred             hhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCccc
Q 048810          276 LDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLE  353 (582)
Q Consensus       276 i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~  353 (582)
                      +.+-+++-+|+|++|+|.. | +-+.+|..|-+||+++|++..+|+.+..+.+|++|.++++ .+.......+..+++|+
T Consensus       122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsmtsL~  200 (1255)
T KOG0444|consen  122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSMTSLS  200 (1255)
T ss_pred             hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC-hhhHHHHhcCccchhhh
Confidence            9999999999999999999 6 4477899999999999999999999999999999999995 44443322355678888


Q ss_pred             EEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc-ccccccEEEEEecccccc---cccccccccc
Q 048810          354 ELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMFIGEARGR---WFVKSETSRL  429 (582)
Q Consensus       354 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~---~~~~~~~l~~  429 (582)
                      .|++++.+....       ..+.++..+.+|+.++++.|++..+|..+ .+.+|++|.++.+.. ..   ..+.-..+.+
T Consensus       201 vLhms~TqRTl~-------N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEt  272 (1255)
T KOG0444|consen  201 VLHMSNTQRTLD-------NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLET  272 (1255)
T ss_pred             hhhcccccchhh-------cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhh
Confidence            999988764433       46788999999999999999999999987 899999999887665 11   1112233344


Q ss_pred             ceecccceeehccccchHHHhhhcccceeeccccCc-ccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCc
Q 048810          430 MKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGV-PSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFP  508 (582)
Q Consensus       430 l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  508 (582)
                      ++++.+.-...   |..+..+ ++|++|...++... +.+|+.   +|.+.+|+++...++ .++-+|.     +..-++
T Consensus       273 LNlSrNQLt~L---P~avcKL-~kL~kLy~n~NkL~FeGiPSG---IGKL~~Levf~aanN-~LElVPE-----glcRC~  339 (1255)
T KOG0444|consen  273 LNLSRNQLTVL---PDAVCKL-TKLTKLYANNNKLTFEGIPSG---IGKLIQLEVFHAANN-KLELVPE-----GLCRCV  339 (1255)
T ss_pred             hccccchhccc---hHHHhhh-HHHHHHHhccCcccccCCccc---hhhhhhhHHHHhhcc-ccccCch-----hhhhhH
Confidence            44444332222   4555443 55555555544421 222322   335555555555543 3333331     234445


Q ss_pred             ccccccccccccccccccccccCcccCCCccEEEEecccCccccc
Q 048810          509 LLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLF  553 (582)
Q Consensus       509 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~  553 (582)
                      +|+.|.+.. +.|-.+|..    +.-+|.|+.|+++.+|+|..-|
T Consensus       340 kL~kL~L~~-NrLiTLPea----IHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  340 KLQKLKLDH-NRLITLPEA----IHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             HHHHhcccc-cceeechhh----hhhcCCcceeeccCCcCccCCC
Confidence            555555543 555555443    3345555555555555554433

>PLN03210 Resistant to P

Probab=99.88  E-value=7.6e-22  Score=226.44  Aligned_cols=319  Identities=21%  Similarity=0.245  Sum_probs=227.1

Q ss_pred             CCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCC-------CCCChhhhccc-CccEEEcCCCCCCC-ccccCCC
Q 048810          231 PRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGS-------SSLPSSLDRLI-NLQTLCLDGCRLKD-IAKVGQL  301 (582)
Q Consensus       231 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~-------~~lp~~i~~L~-~L~~L~L~~~~l~~-~~~~~~l  301 (582)
                      .+.+.+.+.........+....|.+|++|++|.+..+..       ..+|..+..++ +|++|.+.+++++. |..+ .+
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~  610 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RP  610 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence            344444443321233455667788999999998866532       13677777665 58999999888888 5544 67


Q ss_pred             CCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCC
Q 048810          302 KKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGL  381 (582)
Q Consensus       302 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l  381 (582)
                      .+|+.|+++++.+..+|.++..+++|+.|++++|..++.+|.  ++.+++|++|++.+|.....        .+..++++
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~--------lp~si~~L  680 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVE--------LPSSIQYL  680 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccc--------cchhhhcc
Confidence            889999999988888888888899999999988877888875  78889999999988765433        56678888


Q ss_pred             CCccEEEEEec-ccccCCcccccccccEEEEEeccccccccccccccccceecccceeeh--------------------
Q 048810          382 SKLTTLEIHVR-YAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSI--------------------  440 (582)
Q Consensus       382 ~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--------------------  440 (582)
                      ++|+.|+++++ .+..+|..+.+++|+.|.++.|...........+++.+.+........                    
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~  760 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE  760 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchh
Confidence            88898888864 677777777778888888776654222222222333333332221110                    


Q ss_pred             -cc-----ccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccc
Q 048810          441 -LL-----RNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLY  514 (582)
Q Consensus       441 -l~-----~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~  514 (582)
                       ++     .++.....+++|+.|++++|.....+|..+.   .+++|+.|+|++|..++.+|..      ..+++|+.|+
T Consensus       761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~---~L~~L~~L~Ls~C~~L~~LP~~------~~L~sL~~L~  831 (1153)
T PLN03210        761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ---NLHKLEHLEIENCINLETLPTG------INLESLESLD  831 (1153)
T ss_pred             hccccccccchhhhhccccchheeCCCCCCccccChhhh---CCCCCCEEECCCCCCcCeeCCC------CCccccCEEE
Confidence             00     0111122346888888888887777776644   8899999999999888887632      3678999999


Q ss_pred             ccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcchHHHh
Q 048810          515 LIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMII  579 (582)
Q Consensus       515 l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~  579 (582)
                      +++|.++..++.       ..++|+.|+++++ .++.+|.  .+..+++|+.|++.+|++|+.++
T Consensus       832 Ls~c~~L~~~p~-------~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~  886 (1153)
T PLN03210        832 LSGCSRLRTFPD-------ISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVS  886 (1153)
T ss_pred             CCCCCccccccc-------cccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccC
Confidence            999988877653       2468999999887 6888874  57899999999999999999875

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.87  E-value=2.4e-23  Score=204.60  Aligned_cols=338  Identities=16%  Similarity=0.168  Sum_probs=187.1

Q ss_pred             hhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCcc
Q 048810          206 TIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQ  283 (582)
Q Consensus       206 ~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~  283 (582)
                      ....+++.+++..|.+..+|... ...+++.|++.+|  .+.++..+-++-++.||+||||.|.++.+| .++..=.+++
T Consensus        99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N--~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~  176 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN--LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK  176 (873)
T ss_pred             hcCCcceeeeeccchhhhcccccccccceeEEeeecc--ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence            34455666666666666666655 3344666666655  444454444555666666666666666655 2344445666


Q ss_pred             EEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchhh-cCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810          284 TLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS  360 (582)
Q Consensus       284 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (582)
                      +|+|++|.|+.  ...|..+.+|.+|.|+.|+++.+|..+ .+|++|+.|++.. ++++.+..-.|.+|++|+.|.+..|
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN  255 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRN  255 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhc
Confidence            66666666666  355666666666666666666666543 3366666666666 4454443333566666666666666


Q ss_pred             ccccccccCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEeccc---cccccccccccccceeccc
Q 048810          361 FKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGEA---RGRWFVKSETSRLMKLERL  435 (582)
Q Consensus       361 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~---~~~~~~~~~~l~~l~l~~~  435 (582)
                      .+...        .-..+-.+.++++|++..|++..+...-  .+..|+.|+++.+..   ..+.....+.++.+.++.+
T Consensus       256 ~I~kL--------~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  256 DISKL--------DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             Ccccc--------cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence            54333        1123445666667777766666554432  666666666655443   1222233445555555544


Q ss_pred             ceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccc
Q 048810          436 KSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYL  515 (582)
Q Consensus       436 ~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l  515 (582)
                      .-.+.   ++.-...++.|+.|.|+++..-......   +..+.+|++|+|+++. +.....+. .....++|+|++|.+
T Consensus       328 ~i~~l---~~~sf~~L~~Le~LnLs~Nsi~~l~e~a---f~~lssL~~LdLr~N~-ls~~IEDa-a~~f~gl~~LrkL~l  399 (873)
T KOG4194|consen  328 RITRL---DEGSFRVLSQLEELNLSHNSIDHLAEGA---FVGLSSLHKLDLRSNE-LSWCIEDA-AVAFNGLPSLRKLRL  399 (873)
T ss_pred             ccccC---ChhHHHHHHHhhhhcccccchHHHHhhH---HHHhhhhhhhcCcCCe-EEEEEecc-hhhhccchhhhheee
Confidence            33332   3333333466666666665522111112   2356777777777653 22222221 112344777777777


Q ss_pred             cccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeee
Q 048810          516 IGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGV  569 (582)
Q Consensus       516 ~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i  569 (582)
                      .+ ++++.++-.+|.   .+++|++|++.+++ +.++-+. .+.++ .|++|.+
T Consensus       400 ~g-Nqlk~I~krAfs---gl~~LE~LdL~~Na-iaSIq~n-AFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  400 TG-NQLKSIPKRAFS---GLEALEHLDLGDNA-IASIQPN-AFEPM-ELKELVM  446 (873)
T ss_pred             cC-ceeeecchhhhc---cCcccceecCCCCc-ceeeccc-ccccc-hhhhhhh
Confidence            77 777777765443   67777777777763 4444432 22344 6666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.87  E-value=6.1e-23  Score=201.84  Aligned_cols=342  Identities=15%  Similarity=0.127  Sum_probs=258.2

Q ss_pred             HhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccC
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLIN  281 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~  281 (582)
                      ...+...+.|++++|.+..+...  .++++|+.+.+..|  ....+|... ....+|+.|+|.+|.|+++. +.+..++.
T Consensus        74 g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N--~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~a  150 (873)
T KOG4194|consen   74 GFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN--ELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPA  150 (873)
T ss_pred             CcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc--hhhhccccc-ccccceeEEeeeccccccccHHHHHhHhh
Confidence            44567788899999998766543  58999999999887  666777632 45667999999999998754 57888999


Q ss_pred             ccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcC
Q 048810          282 LQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG  358 (582)
Q Consensus       282 L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~  358 (582)
                      ||.|||+.|.++. + +++..-.++++|+|++|+|+.+-.+ +..+.+|.+|.++. ++++.+|...|.+|++|+.|++.
T Consensus       151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcc
Confidence            9999999999988 3 6777778999999999999977543 77788999999999 78999998888889999999998


Q ss_pred             CCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEeccc---cccccccccccccceec
Q 048810          359 NSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGEA---RGRWFVKSETSRLMKLE  433 (582)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~---~~~~~~~~~~l~~l~l~  433 (582)
                      .|.+...        .-..+.+|++|+.|.+..|.+..+.+..  .+.+++.|++..+..   ...|......++.+.++
T Consensus       230 rN~iriv--------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS  301 (873)
T KOG4194|consen  230 RNRIRIV--------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS  301 (873)
T ss_pred             ccceeee--------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence            8876443        2345788899999999999998888776  888999999876665   34566677777777777


Q ss_pred             ccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccc
Q 048810          434 RLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETL  513 (582)
Q Consensus       434 ~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L  513 (582)
                      .+.--++   ...-+++.++|+.|+|+.+...+-.+..+.   .+..|++|.|+.+ .+.++-+.    ...++.+|++|
T Consensus       302 ~NaI~ri---h~d~WsftqkL~~LdLs~N~i~~l~~~sf~---~L~~Le~LnLs~N-si~~l~e~----af~~lssL~~L  370 (873)
T KOG4194|consen  302 YNAIQRI---HIDSWSFTQKLKELDLSSNRITRLDEGSFR---VLSQLEELNLSHN-SIDHLAEG----AFVGLSSLHKL  370 (873)
T ss_pred             hhhhhee---ecchhhhcccceeEeccccccccCChhHHH---HHHHhhhhccccc-chHHHHhh----HHHHhhhhhhh
Confidence            6533332   333445578999999998875444444443   7889999999987 35554322    35567889999


Q ss_pred             cccccccccc-cccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810          514 YLIGLANLET-ICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD  573 (582)
Q Consensus       514 ~l~~~~~L~~-~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~  573 (582)
                      ++++ +.+.- +.++..+ ...+++|++|.+.++ +++.+|.- .+..++.||+|++.+.+
T Consensus       371 dLr~-N~ls~~IEDaa~~-f~gl~~LrkL~l~gN-qlk~I~kr-Afsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  371 DLRS-NELSWCIEDAAVA-FNGLPSLRKLRLTGN-QLKSIPKR-AFSGLEALEHLDLGDNA  427 (873)
T ss_pred             cCcC-CeEEEEEecchhh-hccchhhhheeecCc-eeeecchh-hhccCcccceecCCCCc
Confidence            9987 44432 2222222 335899999999997 78888763 45779999999987653

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.86  E-value=5.7e-22  Score=194.72  Aligned_cols=134  Identities=36%  Similarity=0.650  Sum_probs=111.1

Q ss_pred             cceEEccCCCHHHHHHHHHHhhCCC--CCCcchHHHHHHHHHHhCCcchHHHHHHHHHccC-ChHHHHHHHHHHhccccc
Q 048810            4 QKEIQIDVLSKEEALQLFKKIVGDS--MKTSAFQSIAVEIVGRCGGLPVALITLAKALKNE-SLDTWKDVLRQLRSSYAK   80 (582)
Q Consensus         4 ~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~-~~~~W~~~l~~l~~~~~~   80 (582)
                      ..+|++++|+++||++||++.++..  ..++.+.+.+++|+++|+|+||||+++|++|+.+ +.++|+++++++......
T Consensus       149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~  228 (287)
T PF00931_consen  149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE  228 (287)
T ss_dssp             EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5689999999999999999999833  3456667899999999999999999999999754 889999999998877642


Q ss_pred             cccchhhhHHHHHHHHHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCccccc
Q 048810           81 EIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEV  139 (582)
Q Consensus        81 ~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~  139 (582)
                       ..+....+..++.+||+.||.+ +|.||+|||+||+++.|+++.++++|+|||||+..
T Consensus       229 -~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~  285 (287)
T PF00931_consen  229 -SRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK  285 (287)
T ss_dssp             -SSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred             -cccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence             2234688999999999999997 99999999999999999999999999999999753

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=1.2e-23  Score=208.18  Aligned_cols=339  Identities=20%  Similarity=0.210  Sum_probs=264.8

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCC--CCChhhhcccC
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSS--SLPSSLDRLIN  281 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~i~~L~~  281 (582)
                      ...+.+++.|.+...++..+|... .+.+|+.|.+..|  ....+-.++ +.++.||.+++..|++.  ++|..|-.|..
T Consensus        28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN--~L~~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~d  104 (1255)
T KOG0444|consen   28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN--QLISVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKD  104 (1255)
T ss_pred             HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh--hhHhhhhhh-ccchhhHHHhhhccccccCCCCchhccccc
Confidence            445667788888888888887765 6777777777776  455555554 77888899999888874  48888999999


Q ss_pred             ccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCC
Q 048810          282 LQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN  359 (582)
Q Consensus       282 L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~  359 (582)
                      |..|||+.|+++. |..+...+++-+|++++|+|..+|.. +-+++-|-+||+++ +++..+|+. +..|.+||+|.+++
T Consensus       105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSN  182 (1255)
T ss_pred             ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCC
Confidence            9999999999988 89999999999999999999999987 46788899999998 789999997 78999999999999


Q ss_pred             CccccccccCCCccchhhccCCCCccEEEEEecc--cccCCccc-ccccccEEEEEeccc--cccccccccccccceecc
Q 048810          360 SFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRY--AEILPQDL-VSVELQRYKMFIGEA--RGRWFVKSETSRLMKLER  434 (582)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~-~~~~L~~L~l~~~~~--~~~~~~~~~~l~~l~l~~  434 (582)
                      |.....        .+..+..+++|+.|.+++.+  ..++|..+ .+.+|..++++.+..  .++-....++++.+++++
T Consensus       183 NPL~hf--------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  183 NPLNHF--------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG  254 (1255)
T ss_pred             ChhhHH--------HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc
Confidence            876544        46677788888888888765  45788877 888898888877665  233445567778888877


Q ss_pred             cceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccc
Q 048810          435 LKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLY  514 (582)
Q Consensus       435 ~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~  514 (582)
                      +.....   .-.+..+ .+|++|+++.+. ++.+|..+.   .+++|+.|.+.++. +..   .....+.+.+..|+++.
T Consensus       255 N~iteL---~~~~~~W-~~lEtLNlSrNQ-Lt~LP~avc---KL~kL~kLy~n~Nk-L~F---eGiPSGIGKL~~Levf~  322 (1255)
T KOG0444|consen  255 NKITEL---NMTEGEW-ENLETLNLSRNQ-LTVLPDAVC---KLTKLTKLYANNNK-LTF---EGIPSGIGKLIQLEVFH  322 (1255)
T ss_pred             Cceeee---eccHHHH-hhhhhhccccch-hccchHHHh---hhHHHHHHHhccCc-ccc---cCCccchhhhhhhHHHH
Confidence            654443   3344444 789999999887 566666654   88999999887763 221   11123677888899999


Q ss_pred             ccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcchH
Q 048810          515 LIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELK  576 (582)
Q Consensus       515 l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~  576 (582)
                      .++ ++|+-+|.+    +..++.|+.|.+.++ +|.++|.  .+.-++.|+.|+++..|+|.
T Consensus       323 aan-N~LElVPEg----lcRC~kL~kL~L~~N-rLiTLPe--aIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  323 AAN-NKLELVPEG----LCRCVKLQKLKLDHN-RLITLPE--AIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hhc-cccccCchh----hhhhHHHHHhccccc-ceeechh--hhhhcCCcceeeccCCcCcc
Confidence            988 788888775    667999999999876 7889984  68899999999999999874

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.82  E-value=9.9e-23  Score=191.95  Aligned_cols=203  Identities=18%  Similarity=0.166  Sum_probs=148.5

Q ss_pred             hhhhHHHH--HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC
Q 048810          197 ADLEKKME--ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP  273 (582)
Q Consensus       197 ~~~~~~~~--~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp  273 (582)
                      .+.+.+.|  .....+++.++.+.|.+..+++.+ .+..+..++..+|  ...++|+++ ..+..|..|++.+|.++.+|
T Consensus       100 ~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N--~i~slp~~~-~~~~~l~~l~~~~n~l~~l~  176 (565)
T KOG0472|consen  100 HNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN--QISSLPEDM-VNLSKLSKLDLEGNKLKALP  176 (565)
T ss_pred             cchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc--ccccCchHH-HHHHHHHHhhccccchhhCC
Confidence            34444555  444556677777777777776655 6666666666655  556666665 45677777788888877777


Q ss_pred             hhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810          274 SSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL  352 (582)
Q Consensus       274 ~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L  352 (582)
                      +..-+++.|+.||...|-++. |+.++.+.+|..|++..|++..+| +++.+..|.+|.++. +.++.+|.+...++++|
T Consensus       177 ~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l  254 (565)
T KOG0472|consen  177 ENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSL  254 (565)
T ss_pred             HHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccc
Confidence            666567778888877777777 778888888888888888888887 577777888888777 67778887766678888


Q ss_pred             cEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc-ccccccEEEEEec
Q 048810          353 EELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMFIG  414 (582)
Q Consensus       353 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~  414 (582)
                      ..|++..|....         .+.+++-+++|..|++++|.++.+|..+ .+ +|+.|.+.++
T Consensus       255 ~vLDLRdNklke---------~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  255 LVLDLRDNKLKE---------VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             eeeecccccccc---------CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCC
Confidence            888888877544         4788888889999999999998888877 44 6776666533

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.76  E-value=6.4e-21  Score=179.84  Aligned_cols=204  Identities=21%  Similarity=0.223  Sum_probs=157.3

Q ss_pred             hhhHHHH--HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh
Q 048810          198 DLEKKME--ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS  274 (582)
Q Consensus       198 ~~~~~~~--~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~  274 (582)
                      +.+.+.|  ........+++++.|++..+|+.+ ...+++.++++.+  ....+++++ +.+..|..|+..+|++.++|.
T Consensus        78 n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n--~~~el~~~i-~~~~~l~dl~~~~N~i~slp~  154 (565)
T KOG0472|consen   78 NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN--ELKELPDSI-GRLLDLEDLDATNNQISSLPE  154 (565)
T ss_pred             chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc--ceeecCchH-HHHhhhhhhhccccccccCch
Confidence            3444444  555666777778888887777765 6777777777776  566667666 567778888888888888888


Q ss_pred             hhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCccc
Q 048810          275 SLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLE  353 (582)
Q Consensus       275 ~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~  353 (582)
                      .+.++..|..|++.+|.++. |+..-+++.|++||...|-++.+|+.++.+.+|..|++.. +.+..+|.  |+.+..|.
T Consensus       155 ~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe--f~gcs~L~  231 (565)
T KOG0472|consen  155 DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLPE--FPGCSLLK  231 (565)
T ss_pred             HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCCC--CCccHHHH
Confidence            88888888888888888877 6666668888888888888888888888888888888888 67888884  78888888


Q ss_pred             EEEcCCCccccccccCCCccchhhcc-CCCCccEEEEEecccccCCccc-ccccccEEEEEeccc
Q 048810          354 ELYMGNSFKRWEKVEGGSNASLVELN-GLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMFIGEA  416 (582)
Q Consensus       354 ~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~  416 (582)
                      +|+++.|++.-.         +++.+ ++.++..|+++.|.++.+|..+ .+.+|++|+++.++.
T Consensus       232 Elh~g~N~i~~l---------pae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i  287 (565)
T KOG0472|consen  232 ELHVGENQIEML---------PAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI  287 (565)
T ss_pred             HHHhcccHHHhh---------HHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc
Confidence            888887775443         44544 8899999999999999999988 777899998876554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.68  E-value=5.5e-18  Score=175.95  Aligned_cols=332  Identities=18%  Similarity=0.183  Sum_probs=204.4

Q ss_pred             CcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcC
Q 048810          210 DPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLD  288 (582)
Q Consensus       210 ~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~  288 (582)
                      ++++|++++|.+..+|..+ .+++|+.|.++.|  .+..+|.+. +++++|++|.|.+|....+|.++..+++|++|+++
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n--~i~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN--YIRSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchh--hHhhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence            4788888888888888776 7788888888876  555666554 78888888888888888888888888888888888


Q ss_pred             CCCCCC-ccccCCCCCccEEEeeCC-CCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccc
Q 048810          289 GCRLKD-IAKVGQLKKLEVLSFRDS-DIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK  366 (582)
Q Consensus       289 ~~~l~~-~~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~  366 (582)
                      +|.+.. |..+..+..+..+..++| .+..++.    .. ++++++..+.....++.+ ++.+++  .|++.+|... . 
T Consensus       123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~-~-  192 (1081)
T KOG0618|consen  123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME-V-  192 (1081)
T ss_pred             hhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh-h-
Confidence            888877 777777777777777776 2223322    11 555555543333344433 344443  3555555432 1 


Q ss_pred             ccCCCccchhhccCCC--------------------CccEEEEEecccccCCcccccccccEEEEEeccc--cccccccc
Q 048810          367 VEGGSNASLVELNGLS--------------------KLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA--RGRWFVKS  424 (582)
Q Consensus       367 ~~~~~~~~~~~l~~l~--------------------~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~  424 (582)
                               ..+..+.                    +|+.|..+.|.+.+......-.+|+.++++....  .++|...+
T Consensus       193 ---------~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~  263 (1081)
T KOG0618|consen  193 ---------LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGAC  263 (1081)
T ss_pred             ---------hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhc
Confidence                     1122222                    2333333333333222222334566666654433  34566666


Q ss_pred             cccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccc----
Q 048810          425 ETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVR----  500 (582)
Q Consensus       425 ~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~----  500 (582)
                      .++..+....+.-...   |..+... .+|+.|.+..|. ++..+..   .+.+.+|++|++..+ ++..+|+..+    
T Consensus       264 ~nle~l~~n~N~l~~l---p~ri~~~-~~L~~l~~~~ne-l~yip~~---le~~~sL~tLdL~~N-~L~~lp~~~l~v~~  334 (1081)
T KOG0618|consen  264 ANLEALNANHNRLVAL---PLRISRI-TSLVSLSAAYNE-LEYIPPF---LEGLKSLRTLDLQSN-NLPSLPDNFLAVLN  334 (1081)
T ss_pred             ccceEecccchhHHhh---HHHHhhh-hhHHHHHhhhhh-hhhCCCc---ccccceeeeeeehhc-cccccchHHHhhhh
Confidence            6655555444332222   3334332 566666666655 3334433   336778888888776 3445544221    


Q ss_pred             -----------------cccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhh
Q 048810          501 -----------------RVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLW  563 (582)
Q Consensus       501 -----------------~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~  563 (582)
                                       ..+...++.|+.|.+.+ +.|++-+   ++.+..|++|+.|+++++ +|.++|. +.+.++..
T Consensus       335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c---~p~l~~~~hLKVLhLsyN-rL~~fpa-s~~~kle~  408 (1081)
T KOG0618|consen  335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSC---FPVLVNFKHLKVLHLSYN-RLNSFPA-SKLRKLEE  408 (1081)
T ss_pred             HHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccc---hhhhccccceeeeeeccc-ccccCCH-HHHhchHH
Confidence                             11345566778888877 5555443   333668899999999997 7888887 56788999


Q ss_pred             cceeeeccCcchHHHh
Q 048810          564 LQKVGVEECDELKMII  579 (582)
Q Consensus       564 L~~L~i~~C~~L~~i~  579 (582)
                      |++|++++ .+|+.|+
T Consensus       409 LeeL~LSG-NkL~~Lp  423 (1081)
T KOG0618|consen  409 LEELNLSG-NKLTTLP  423 (1081)
T ss_pred             hHHHhccc-chhhhhh
Confidence            99999988 5666665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=6.3e-19  Score=147.52  Aligned_cols=166  Identities=23%  Similarity=0.325  Sum_probs=143.4

Q ss_pred             cCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCC
Q 048810          222 QVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQ  300 (582)
Q Consensus       222 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~  300 (582)
                      .+++..++++++..|.++.+  ....+|+.+ ..+++|++|++++|+++++|.+++.++.|+.|++.-|++.. |..+|.
T Consensus        24 ~~~~gLf~~s~ITrLtLSHN--Kl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs  100 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHN--KLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS  100 (264)
T ss_pred             hhcccccchhhhhhhhcccC--ceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence            45566667778888888876  666677776 78999999999999999999999999999999999998887 899999


Q ss_pred             CCCccEEEeeCCCCC--ccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhc
Q 048810          301 LKKLEVLSFRDSDIE--QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVEL  378 (582)
Q Consensus       301 l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l  378 (582)
                      ++.|+.||+..|++.  .+|..+..++.|+.|.+++ +..+-+|++ ++++++||.|.+..|....         .+.++
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll~---------lpkei  169 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLLS---------LPKEI  169 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchhh---------CcHHH
Confidence            999999999999877  7898888899999999999 678888988 7999999999998886544         38899


Q ss_pred             cCCCCccEEEEEecccccCCccc
Q 048810          379 NGLSKLTTLEIHVRYAEILPQDL  401 (582)
Q Consensus       379 ~~l~~L~~L~l~~~~~~~~~~~~  401 (582)
                      +.++.|++|++++|++..+|..+
T Consensus       170 g~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  170 GDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             HHHHHHHHHhcccceeeecChhh
Confidence            99999999999999999888765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.62  E-value=2.9e-17  Score=170.70  Aligned_cols=66  Identities=12%  Similarity=0.094  Sum_probs=33.9

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP  273 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp  273 (582)
                      ......++++.++.|.+...|... .+.+|+++.+..+  ....+|.++ +.+++|++|++++|.+...|
T Consensus        64 it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n--~l~~lP~~~-~~lknl~~LdlS~N~f~~~P  130 (1081)
T KOG0618|consen   64 ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN--RLQSLPASI-SELKNLQYLDLSFNHFGPIP  130 (1081)
T ss_pred             hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc--hhhcCchhH-HhhhcccccccchhccCCCc
Confidence            333445555555555555555433 5555555555554  333444443 55555555555555544433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=7.3e-18  Score=141.21  Aligned_cols=156  Identities=21%  Similarity=0.253  Sum_probs=141.7

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCcc
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQ  283 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~  283 (582)
                      ...+..++++.++.|++..+|+.+ .+.+|+.|.++++  ....+|..+ +.+++||.|+++-|.+..+|..++.++-|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn--qie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN--QIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc--hhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhh
Confidence            445678899999999999999887 8999999999987  677788876 899999999999999999999999999999


Q ss_pred             EEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810          284 TLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS  360 (582)
Q Consensus       284 ~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (582)
                      +|||.+|++.+   |..+..+..|+.|+++.|.++.+|+.++++++||.|.+++ +.+-++|.+ ++.++.|++|++.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhcccc
Confidence            99999999877   7889999999999999999999999999999999999999 677889988 899999999999998


Q ss_pred             ccccc
Q 048810          361 FKRWE  365 (582)
Q Consensus       361 ~~~~~  365 (582)
                      .....
T Consensus       184 rl~vl  188 (264)
T KOG0617|consen  184 RLTVL  188 (264)
T ss_pred             eeeec
Confidence            76443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.61  E-value=7.6e-15  Score=157.25  Aligned_cols=258  Identities=19%  Similarity=0.126  Sum_probs=179.7

Q ss_pred             cCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcC
Q 048810          209 KDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLD  288 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~  288 (582)
                      ..-..++++.+.+..+|..+. ++|+.|.+..|  ....+|.    .+++|++|++++|.++.+|..   ..+|+.|+++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N--~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDN--NLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF  270 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCC--cCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence            456788999999988887653 47899998886  4555654    367899999999999888853   3578889999


Q ss_pred             CCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccccc
Q 048810          289 GCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVE  368 (582)
Q Consensus       289 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~  368 (582)
                      +|.++.++.  ...+|+.|++++|+++.+|..   +++|++|++++ +.+..+|..    ..+|+.|++++|.+...   
T Consensus       271 ~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l----p~~L~~L~Ls~N~L~~L---  337 (788)
T PRK15387        271 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLTSL---  337 (788)
T ss_pred             CCchhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC----cccccccccccCccccc---
Confidence            998887322  235788899999999988863   47899999998 567777652    24677788887765322   


Q ss_pred             CCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHH
Q 048810          369 GGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMR  448 (582)
Q Consensus       369 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~  448 (582)
                            + .+  ..+|+.|++++|.+..+|..  ..+|+.|.++.+..                   .  .+   |    
T Consensus       338 ------P-~l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L-------------------~--~L---P----  378 (788)
T PRK15387        338 ------P-TL--PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRL-------------------T--SL---P----  378 (788)
T ss_pred             ------c-cc--ccccceEecCCCccCCCCCC--Ccccceehhhcccc-------------------c--cC---c----
Confidence                  1 11  14788999999988887753  34555555443222                   0  00   2    


Q ss_pred             HhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccccccccccccccc
Q 048810          449 MLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQ  528 (582)
Q Consensus       449 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~  528 (582)
                      ..+++|+.|++++|. ++.++.      ..++|+.|++++|. +..+|.        .+.+|+.|++++ ++++.+|.. 
T Consensus       379 ~l~~~L~~LdLs~N~-Lt~LP~------l~s~L~~LdLS~N~-LssIP~--------l~~~L~~L~Ls~-NqLt~LP~s-  440 (788)
T PRK15387        379 ALPSGLKELIVSGNR-LTSLPV------LPSELKELMVSGNR-LTSLPM--------LPSGLLSLSVYR-NQLTRLPES-  440 (788)
T ss_pred             ccccccceEEecCCc-ccCCCC------cccCCCEEEccCCc-CCCCCc--------chhhhhhhhhcc-CcccccChH-
Confidence            123578889998876 343432      34688999999874 555431        235788888887 778877754 


Q ss_pred             ccCcccCCCccEEEEecccCcc
Q 048810          529 LREDQSFSNLRIIEVEHCNKLK  550 (582)
Q Consensus       529 ~~~~~~~~~L~~L~l~~c~~L~  550 (582)
                         ...+++|+.|++++++ +.
T Consensus       441 ---l~~L~~L~~LdLs~N~-Ls  458 (788)
T PRK15387        441 ---LIHLSSETTVNLEGNP-LS  458 (788)
T ss_pred             ---HhhccCCCeEECCCCC-CC
Confidence               4578899999999884 44

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.58  E-value=4.3e-15  Score=162.59  Aligned_cols=331  Identities=21%  Similarity=0.236  Sum_probs=213.6

Q ss_pred             CCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCC--CCCCCh-hhhcccCccEEEcCCC-CCCC-
Q 048810          220 GDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIG--SSSLPS-SLDRLINLQTLCLDGC-RLKD-  294 (582)
Q Consensus       220 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~~~lp~-~i~~L~~L~~L~L~~~-~l~~-  294 (582)
                      .....|........|.+.+.++  ....++..  ..++.|+.|-+.++.  +..++. .+..++.|++|||++| .+.. 
T Consensus       512 ~~~~~~~~~~~~~~rr~s~~~~--~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L  587 (889)
T KOG4658|consen  512 GLSEIPQVKSWNSVRRMSLMNN--KIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL  587 (889)
T ss_pred             CccccccccchhheeEEEEecc--chhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence            4444666666778888888876  44445544  355689999998886  555554 4788999999999998 5666 


Q ss_pred             ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccc
Q 048810          295 IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNAS  374 (582)
Q Consensus       295 ~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  374 (582)
                      |..|+.|.+||+|+++++.++.+|.++++|+.|.+|++..+..+..+| +++..+.+|++|.+.....      ......
T Consensus       588 P~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~------~~~~~~  660 (889)
T KOG4658|consen  588 PSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSAL------SNDKLL  660 (889)
T ss_pred             ChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeecccc------ccchhh
Confidence            999999999999999999999999999999999999999977776664 4466699999999877541      122345


Q ss_pred             hhhccCCCCccEEEEEecccccCCcccccccccEE----EEEeccc--cccccccccccccceecccceeehc--cccch
Q 048810          375 LVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRY----KMFIGEA--RGRWFVKSETSRLMKLERLKSVSIL--LRNPG  446 (582)
Q Consensus       375 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L----~l~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~l--~~~~~  446 (582)
                      +.++.++++|+.+.+...+...+.....+.+|.++    .+..+..  ..........++.+.+..+......  +....
T Consensus       661 l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~  740 (889)
T KOG4658|consen  661 LKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESL  740 (889)
T ss_pred             HHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccccccc
Confidence            67778888888888765444111111133333322    2111111  1223445566667777666543221  00111


Q ss_pred             HHH-hhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccc-----cCCCCcccccc-cccccc
Q 048810          447 MRM-LLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRV-----GCEVFPLLETL-YLIGLA  519 (582)
Q Consensus       447 i~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~~~~~~L~~L-~l~~~~  519 (582)
                      ... .++++.++.+.+|...++..+..    ..|+|+.|.+..|..++.+.......     ....|+++..+ .+.+.+
T Consensus       741 ~~~~~f~~l~~~~~~~~~~~r~l~~~~----f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~  816 (889)
T KOG4658|consen  741 IVLLCFPNLSKVSILNCHMLRDLTWLL----FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLG  816 (889)
T ss_pred             chhhhHHHHHHHHhhccccccccchhh----ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCC
Confidence            111 14677777777777777665533    47899999999998777654322111     12455566666 455555


Q ss_pred             cccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccC-cchHHH
Q 048810          520 NLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEEC-DELKMI  578 (582)
Q Consensus       520 ~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C-~~L~~i  578 (582)
                      .+..+-..++    .++.|+.+.+..||++..+|         .+.++.+.+| +.+..+
T Consensus       817 ~l~~i~~~~l----~~~~l~~~~ve~~p~l~~~P---------~~~~~~i~~~~~~~~~~  863 (889)
T KOG4658|consen  817 GLPQLYWLPL----SFLKLEELIVEECPKLGKLP---------LLSTLTIVGCEEKLKEY  863 (889)
T ss_pred             CCceeEeccc----CccchhheehhcCcccccCc---------cccccceeccccceeec
Confidence            5555544333    25558888888887776554         4455666665 444433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.54  E-value=5.5e-14  Score=151.67  Aligned_cols=249  Identities=15%  Similarity=0.151  Sum_probs=160.2

Q ss_pred             hhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEE
Q 048810          206 TIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTL  285 (582)
Q Consensus       206 ~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L  285 (582)
                      ....+...+.+.++.+..+|..+ .++++.|++.+|  ....+|..++   .+|++|++++|.++.+|..+.  .+|+.|
T Consensus       175 Cl~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N--~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L  246 (754)
T PRK15370        175 CLKNNKTELRLKILGLTTIPACI-PEQITTLILDNN--ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEM  246 (754)
T ss_pred             hcccCceEEEeCCCCcCcCCccc-ccCCcEEEecCC--CCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEE
Confidence            33455677888888887777654 356888888876  4556776553   478888888888888887654  368888


Q ss_pred             EcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          286 CLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       286 ~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      ++++|.+.. |..+.  .+|++|++++|+++.+|..+.  ++|++|++++ +.++.+|.. +  .++|+.|++++|.+..
T Consensus       247 ~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        247 ELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-L--PSGITHLNVQSNSLTA  318 (754)
T ss_pred             ECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-c--hhhHHHHHhcCCcccc
Confidence            888888777 55443  478888888888888877553  4788888888 467777754 2  2467777777776532


Q ss_pred             ccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEecccccccc-ccccccccceecccceeehccc
Q 048810          365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWF-VKSETSRLMKLERLKSVSILLR  443 (582)
Q Consensus       365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~l~l~~~~~~~~l~~  443 (582)
                      .         +..+  .++|+.|++++|.+..+|..+. ++|+.|+++.+.. .... ...+.++.+.+..+.-...   
T Consensus       319 L---------P~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L-~~LP~~lp~~L~~LdLs~N~Lt~L---  382 (754)
T PRK15370        319 L---------PETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQI-TVLPETLPPTITTLDVSRNALTNL---  382 (754)
T ss_pred             C---------Cccc--cccceeccccCCccccCChhhc-CcccEEECCCCCC-CcCChhhcCCcCEEECCCCcCCCC---
Confidence            2         1122  2467778888887777776543 5777777766543 1110 1123455566655533333   


Q ss_pred             cchHHHhhhcccceeeccccCcccccccccC-CCCCCCCcEEEEeecC
Q 048810          444 NPGMRMLLQRTEDLWLETLEGVPSVVHELDD-GEGFPRLKHLYVESCS  490 (582)
Q Consensus       444 ~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~  490 (582)
                      |..++   .+|+.|++++|.. ..+|..+.. .+.+|++..|.+.+++
T Consensus       383 P~~l~---~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        383 PENLP---AALQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CHhHH---HHHHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence            55443   4678888888763 344443210 2345778888888775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.53  E-value=9.5e-14  Score=148.91  Aligned_cols=245  Identities=17%  Similarity=0.070  Sum_probs=163.5

Q ss_pred             hhHHHHHhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhc
Q 048810          199 LEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDR  278 (582)
Q Consensus       199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~  278 (582)
                      .+..+|...+..++.|++.+|.+..+|..  .++|++|++++|  ....+|.    ..++|+.|++++|.++.+|...  
T Consensus       212 ~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N--~LtsLP~----lp~sL~~L~Ls~N~L~~Lp~lp--  281 (788)
T PRK15387        212 GLTTLPDCLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGN--QLTSLPV----LPPGLLELSIFSNPLTHLPALP--  281 (788)
T ss_pred             CCCcCCcchhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCC--ccCcccC----cccccceeeccCCchhhhhhch--
Confidence            45556654556899999999999988864  589999999987  4555664    2468999999999998888633  


Q ss_pred             ccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcC
Q 048810          279 LINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG  358 (582)
Q Consensus       279 L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~  358 (582)
                       .+|+.|++++|+++..+.  .+++|++|++++|.++.+|..   ..+|+.|++++ +.++.+|.  +  ..+|+.|+++
T Consensus       282 -~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~-N~L~~LP~--l--p~~Lq~LdLS  350 (788)
T PRK15387        282 -SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYN-NQLTSLPT--L--PSGLQELSVS  350 (788)
T ss_pred             -hhcCEEECcCCccccccc--cccccceeECCCCccccCCCC---ccccccccccc-Cccccccc--c--ccccceEecC
Confidence             568889999999888322  247899999999999888763   24677888888 56777774  2  2578899998


Q ss_pred             CCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceeccccee
Q 048810          359 NSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSV  438 (582)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~  438 (582)
                      +|.+...         +. +  ..+|+.|++++|.+..+|..  ..+|+.|+++.+.. .........++.+.+..+.-.
T Consensus       351 ~N~Ls~L---------P~-l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~L-t~LP~l~s~L~~LdLS~N~Ls  415 (788)
T PRK15387        351 DNQLASL---------PT-L--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRL-TSLPVLPSELKELMVSGNRLT  415 (788)
T ss_pred             CCccCCC---------CC-C--CcccceehhhccccccCccc--ccccceEEecCCcc-cCCCCcccCCCEEEccCCcCC
Confidence            8875432         11 1  24677788888888877754  35677887765554 222122233444444443221


Q ss_pred             ehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecC
Q 048810          439 SILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCS  490 (582)
Q Consensus       439 ~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  490 (582)
                      .+   |.    .+.+|+.|++++|. ++.+|..+.   .+++|+.|++++|+
T Consensus       416 sI---P~----l~~~L~~L~Ls~Nq-Lt~LP~sl~---~L~~L~~LdLs~N~  456 (788)
T PRK15387        416 SL---PM----LPSGLLSLSVYRNQ-LTRLPESLI---HLSSETTVNLEGNP  456 (788)
T ss_pred             CC---Cc----chhhhhhhhhccCc-ccccChHHh---hccCCCeEECCCCC
Confidence            11   22    23456667776665 344554433   66777777777764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.50  E-value=1e-13  Score=149.55  Aligned_cols=234  Identities=14%  Similarity=0.159  Sum_probs=172.7

Q ss_pred             hhHHHHHhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhc
Q 048810          199 LEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDR  278 (582)
Q Consensus       199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~  278 (582)
                      .+..+|...+..++.|++++|.+..+|.... ++|++|++.+|  ....+|..+.   .+|+.|++++|.+..+|..+. 
T Consensus       189 ~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N--~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~-  261 (754)
T PRK15370        189 GLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSN--QLTSIPATLP---DTIQEMELSINRITELPERLP-  261 (754)
T ss_pred             CcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCC--ccccCChhhh---ccccEEECcCCccCcCChhHh-
Confidence            4455565566789999999999999887653 68999999987  4557777553   579999999999999998775 


Q ss_pred             ccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEc
Q 048810          279 LINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM  357 (582)
Q Consensus       279 L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l  357 (582)
                       .+|++|++++|+++. |..+.  .+|++|++++|+++.+|..+.  .+|++|++++ +.+..+|.. +  .++|+.|++
T Consensus       262 -s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~~L~L  332 (754)
T PRK15370        262 -SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLKTLEA  332 (754)
T ss_pred             -CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccceeccc
Confidence             489999999999988 65554  589999999999999987543  5799999998 567778764 2  368999999


Q ss_pred             CCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccc-cccccccceecccc
Q 048810          358 GNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFV-KSETSRLMKLERLK  436 (582)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~l~l~~~~  436 (582)
                      ++|.+...         +..+.  ++|+.|++++|.+..+|..+ .++|+.|+++.+.. ..+.. ....++.+.+..+.
T Consensus       333 s~N~Lt~L---------P~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~L-t~LP~~l~~sL~~LdLs~N~  399 (754)
T PRK15370        333 GENALTSL---------PASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRNAL-TNLPENLPAALQIMQASRNN  399 (754)
T ss_pred             cCCccccC---------Chhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCCcC-CCCCHhHHHHHHHHhhccCC
Confidence            98865432         23332  68999999999998887765 36899999887665 22211 12245556666554


Q ss_pred             eeehccccchHHHh---hhcccceeeccccC
Q 048810          437 SVSILLRNPGMRML---LQRTEDLWLETLEG  464 (582)
Q Consensus       437 ~~~~l~~~~~i~~~---~~~L~~L~L~~~~~  464 (582)
                      -...   |.+++.+   .+++..|.+.+|+.
T Consensus       400 L~~L---P~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        400 LVRL---PESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             cccC---chhHHHHhhcCCCccEEEeeCCCc
Confidence            3333   6555544   36678899988774

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.36  E-value=8.6e-15  Score=138.64  Aligned_cols=269  Identities=16%  Similarity=0.177  Sum_probs=155.1

Q ss_pred             cccccChHHhcCCCCccEEEcCCCCCCC-CChhhhcccCccEEEcCC-CCCCC-c-cccCCCCCccEEEeeCCCCCccch
Q 048810          244 CSIQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLDRLINLQTLCLDG-CRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPL  319 (582)
Q Consensus       244 ~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~L~~L~L~~-~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~  319 (582)
                      .+..+|+..|+.+++||.||||+|.|+. -|..+..|.+|-.|-+.+ |+|++ | ..|++|..|+.|.+.-|.+..++.
T Consensus        78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~  157 (498)
T KOG4237|consen   78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQ  157 (498)
T ss_pred             CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhH
Confidence            4556677778888889999999988877 467788888887777666 78888 4 668888888888888888886654


Q ss_pred             -hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccc-cccC---CCccchhhccCCCCccEEEEEeccc
Q 048810          320 -EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWE-KVEG---GSNASLVELNGLSKLTTLEIHVRYA  394 (582)
Q Consensus       320 -~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~-~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~  394 (582)
                       .+..+++|..|.+.+ +.+..++.+.+..+..++++.+..|.+... +.++   .....+.+++..+......+...++
T Consensus       158 ~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri  236 (498)
T KOG4237|consen  158 DALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRI  236 (498)
T ss_pred             HHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHh
Confidence             477888888888888 678888887788888888888766542111 0000   0000111222222222222222222


Q ss_pred             ccCCcccccccccEEEEEeccccccccccccccccceecccceeehcccc-chHHHhhhcccceeeccccCccccccccc
Q 048810          395 EILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRN-PGMRMLLQRTEDLWLETLEGVPSVVHELD  473 (582)
Q Consensus       395 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~-~~i~~~~~~L~~L~L~~~~~~~~~~~~~~  473 (582)
                      ...++.-....++++.-                 .+... +.....  .| ..+.. +++|++|+|+++.....-..+|.
T Consensus       237 ~q~~a~kf~c~~esl~s-----------------~~~~~-d~~d~~--cP~~cf~~-L~~L~~lnlsnN~i~~i~~~aFe  295 (498)
T KOG4237|consen  237 NQEDARKFLCSLESLPS-----------------RLSSE-DFPDSI--CPAKCFKK-LPNLRKLNLSNNKITRIEDGAFE  295 (498)
T ss_pred             cccchhhhhhhHHhHHH-----------------hhccc-cCcCCc--ChHHHHhh-cccceEeccCCCccchhhhhhhc
Confidence            22221111111111100                 00000 000000  01 12333 47888888887775444444443


Q ss_pred             CCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecc
Q 048810          474 DGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHC  546 (582)
Q Consensus       474 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c  546 (582)
                         ....+++|.+.++ +++.+...    ...++..|+.|++.+ ++++.+.++.|.   ...+|.+|++-.+
T Consensus       296 ---~~a~l~eL~L~~N-~l~~v~~~----~f~~ls~L~tL~L~~-N~it~~~~~aF~---~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  296 ---GAAELQELYLTRN-KLEFVSSG----MFQGLSGLKTLSLYD-NQITTVAPGAFQ---TLFSLSTLNLLSN  356 (498)
T ss_pred             ---chhhhhhhhcCcc-hHHHHHHH----hhhccccceeeeecC-CeeEEEeccccc---ccceeeeeehccC
Confidence               6777788888776 34444211    345566777777777 677766655443   4556666766543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.32  E-value=1.7e-13  Score=129.93  Aligned_cols=293  Identities=17%  Similarity=0.138  Sum_probs=165.8

Q ss_pred             cccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeC-CCCCccch
Q 048810          244 CSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRD-SDIEQLPL  319 (582)
Q Consensus       244 ~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~-~~l~~lp~  319 (582)
                      ....+|.++   ...-..++|..|.|+.+|+ .|+.+++||.|||+.|.|+.  |..|..+.+|..|-+.+ |+|+.+|.
T Consensus        57 GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k  133 (498)
T KOG4237|consen   57 GLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK  133 (498)
T ss_pred             CcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence            444555543   3345567777777777764 56777777777777777776  67777777777666666 67777776


Q ss_pred             h-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCC
Q 048810          320 E-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILP  398 (582)
Q Consensus       320 ~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  398 (582)
                      + +++|..|+.|.+.- +++..++.+.+..+++|..|.+.+|.+...        .-..+..+..++.+.+..|.....-
T Consensus       134 ~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i--------~~~tf~~l~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  134 GAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSI--------CKGTFQGLAAIKTLHLAQNPFICDC  204 (498)
T ss_pred             hHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhh--------ccccccchhccchHhhhcCcccccc
Confidence            5 56677777777665 456666666677777777777776654433        2224555666666665544311000


Q ss_pred             cccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccce--eeccccCcccccccccCCC
Q 048810          399 QDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDL--WLETLEGVPSVVHELDDGE  476 (582)
Q Consensus       399 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L--~L~~~~~~~~~~~~~~~~~  476 (582)
                         .++.+..... .......|..-. ....+.-......+    +..+.   -+++.+  .+..........+... ++
T Consensus       205 ---nL~wla~~~a-~~~ietsgarc~-~p~rl~~~Ri~q~~----a~kf~---c~~esl~s~~~~~d~~d~~cP~~c-f~  271 (498)
T KOG4237|consen  205 ---NLPWLADDLA-MNPIETSGARCV-SPYRLYYKRINQED----ARKFL---CSLESLPSRLSSEDFPDSICPAKC-FK  271 (498)
T ss_pred             ---ccchhhhHHh-hchhhcccceec-chHHHHHHHhcccc----hhhhh---hhHHhHHHhhccccCcCCcChHHH-Hh
Confidence               0111100000 000001111100 00011000000000    01111   112222  1111111111111111 45


Q ss_pred             CCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChh
Q 048810          477 GFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFS  556 (582)
Q Consensus       477 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~  556 (582)
                      .+|+|++|+++++ .++.+.+.    ...+...++.|.+.+ ++++.+..+.|.   .+..|+.|++.++ +++.+.+ .
T Consensus       272 ~L~~L~~lnlsnN-~i~~i~~~----aFe~~a~l~eL~L~~-N~l~~v~~~~f~---~ls~L~tL~L~~N-~it~~~~-~  340 (498)
T KOG4237|consen  272 KLPNLRKLNLSNN-KITRIEDG----AFEGAAELQELYLTR-NKLEFVSSGMFQ---GLSGLKTLSLYDN-QITTVAP-G  340 (498)
T ss_pred             hcccceEeccCCC-ccchhhhh----hhcchhhhhhhhcCc-chHHHHHHHhhh---ccccceeeeecCC-eeEEEec-c
Confidence            8999999999997 45555433    455667899999988 889888776554   7789999999998 7887765 3


Q ss_pred             HHhhhhhcceeeeccC
Q 048810          557 MAKNLLWLQKVGVEEC  572 (582)
Q Consensus       557 ~~~~l~~L~~L~i~~C  572 (582)
                      .++.+.+|.+|.+-..
T Consensus       341 aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSN  356 (498)
T ss_pred             cccccceeeeeehccC
Confidence            5688999999988543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.19  E-value=9.4e-13  Score=130.57  Aligned_cols=177  Identities=21%  Similarity=0.312  Sum_probs=149.9

Q ss_pred             cCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEc
Q 048810          209 KDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCL  287 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L  287 (582)
                      ......+++.|.+..+|... .+-.|..+.+..|  ..-.+|..+ ..+..|.+|+|+.|++..+|..++.|+ |+.|-+
T Consensus        75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n--~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHN--CIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cchhhhhccccccccCchHHHHHHHHHHHHHHhc--cceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence            34556778888888888766 6677888888776  555666665 788999999999999999999998887 899999


Q ss_pred             CCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccc
Q 048810          288 DGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK  366 (582)
Q Consensus       288 ~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~  366 (582)
                      ++|+++. |+.++.+..|..||.+.|.+..+|..++.+.+|+.|.+.. +.+..+|++ +..| .|..|+++.|.+... 
T Consensus       151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~L-pLi~lDfScNkis~i-  226 (722)
T KOG0532|consen  151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSL-PLIRLDFSCNKISYL-  226 (722)
T ss_pred             ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCC-ceeeeecccCceeec-
Confidence            9999998 8999988999999999999999999999999999999998 678888887 6655 488999998877654 


Q ss_pred             ccCCCccchhhccCCCCccEEEEEecccccCCccc
Q 048810          367 VEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL  401 (582)
Q Consensus       367 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  401 (582)
                              +..+.+|++|+.|-|.+|.+.+-|..+
T Consensus       227 --------Pv~fr~m~~Lq~l~LenNPLqSPPAqI  253 (722)
T KOG0532|consen  227 --------PVDFRKMRHLQVLQLENNPLQSPPAQI  253 (722)
T ss_pred             --------chhhhhhhhheeeeeccCCCCCChHHH
Confidence                    888999999999999999998888776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.17  E-value=1.6e-12  Score=129.79  Aligned_cols=137  Identities=23%  Similarity=0.218  Sum_probs=70.0

Q ss_pred             HhcCCCCccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCCCCC--------ccccCCCCCccEEEeeCCCCC-cc
Q 048810          252 FFEGMEGLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCRLKD--------IAKVGQLKKLEVLSFRDSDIE-QL  317 (582)
Q Consensus       252 ~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--------~~~~~~l~~L~~L~l~~~~l~-~l  317 (582)
                      +|..+.+|++|+++++.++.     ++..+...++|++|+++++.+..        +..+..+++|++|++++|.+. ..
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence            34555667777777766532     44455556666777766665541        134555666666666666554 23


Q ss_pred             chhhcCCCC---CCEEcccccccccc-----cCcccccCC-CcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810          318 PLEIGQLRR---LQLLDLSNCWTLEV-----IAPNVISKL-SRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE  388 (582)
Q Consensus       318 p~~i~~l~~---L~~L~l~~~~~l~~-----lp~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  388 (582)
                      +..+..+.+   |++|++++|. +..     +.. .+..+ ++|+.|++++|.+...    ........+..+++|++|+
T Consensus        98 ~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~L~~L~  171 (319)
T cd00116          98 CGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGA----SCEALAKALRANRDLKELN  171 (319)
T ss_pred             HHHHHHHhccCcccEEEeeCCc-cchHHHHHHHH-HHHhCCCCceEEEcCCCcCCch----HHHHHHHHHHhCCCcCEEE
Confidence            333333333   6666666643 221     111 13344 5666666666654321    0011233344555566666


Q ss_pred             EEeccc
Q 048810          389 IHVRYA  394 (582)
Q Consensus       389 l~~~~~  394 (582)
                      +++|.+
T Consensus       172 l~~n~l  177 (319)
T cd00116         172 LANNGI  177 (319)
T ss_pred             CcCCCC
Confidence            555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.16  E-value=2e-12  Score=128.31  Aligned_cols=188  Identities=21%  Similarity=0.205  Sum_probs=156.6

Q ss_pred             EEEecCCCCcCCCCC---CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCC
Q 048810          213 AISLPYRGDQVLPQR---MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDG  289 (582)
Q Consensus       213 ~l~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~  289 (582)
                      ++.|++..++.+|..   ..+.--...+++.|  ....+|.++ ..+..|..+.+..|.+..+|..+++|..|.+|+|+.
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN--R~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRN--RFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhcccc--ccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc
Confidence            455666666665543   24555566777766  556677665 678899999999999999999999999999999999


Q ss_pred             CCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccccc
Q 048810          290 CRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVE  368 (582)
Q Consensus       290 ~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~  368 (582)
                      |+++. |..++.|+ |+.|-+++|+++.+|..++.++.|.+||.+. +.+..+|.. ++.+.+|+.|++..|....    
T Consensus       131 NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l~~----  203 (722)
T KOG0532|consen  131 NQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHLED----  203 (722)
T ss_pred             chhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhhhh----
Confidence            99998 88888776 9999999999999999999889999999998 568888887 8999999999998887544    


Q ss_pred             CCCccchhhccCCCCccEEEEEecccccCCccc-ccccccEEEEEeccc
Q 048810          369 GGSNASLVELNGLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMFIGEA  416 (582)
Q Consensus       369 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~  416 (582)
                           .+.++..|+ |..|++++|++..+|..+ .+..|+.|.+..+..
T Consensus       204 -----lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  204 -----LPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             -----CCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence                 478888665 899999999999999998 899999998865543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.14  E-value=1.7e-11  Score=122.42  Aligned_cols=181  Identities=22%  Similarity=0.163  Sum_probs=92.7

Q ss_pred             cCcEEEEecCCCCcC-----CCCCC-CCCCccEEEeeccCcc----ccccChHHhcCCCCccEEEcCCCCCCC-CChhhh
Q 048810          209 KDPIAISLPYRGDQV-----LPQRM-RCPRLGLFLLHTIGLC----SIQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLD  277 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~----~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~  277 (582)
                      ..++.+.+.++.+..     ++... ..+.++.+.+.++...    ........+..+++|+.|+++++.+.. .+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            346666666666521     22222 3445666666554111    001111234556677777777776653 344444


Q ss_pred             cccC---ccEEEcCCCCCCC------ccccCCC-CCccEEEeeCCCCC-----ccchhhcCCCCCCEEccccccccc---
Q 048810          278 RLIN---LQTLCLDGCRLKD------IAKVGQL-KKLEVLSFRDSDIE-----QLPLEIGQLRRLQLLDLSNCWTLE---  339 (582)
Q Consensus       278 ~L~~---L~~L~L~~~~l~~------~~~~~~l-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~l~---  339 (582)
                      .+.+   |++|++++|.+..      ...+..+ ++|+.|++++|.++     .++..+..+++|++|++++|. ++   
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~  181 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAG  181 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHH
Confidence            4444   7777777776653      1334555 66777777776655     334445556667777776643 22   


Q ss_pred             --ccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810          340 --VIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE  395 (582)
Q Consensus       340 --~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  395 (582)
                        .++.. +...++|++|++++|.+...    ........+..+++|+.|++++|.+.
T Consensus       182 ~~~l~~~-l~~~~~L~~L~L~~n~i~~~----~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         182 IRALAEG-LKANCNLEVLDLNNNGLTDE----GASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHH-HHhCCCCCEEeccCCccChH----HHHHHHHHhcccCCCCEEecCCCcCc
Confidence              12221 33445666777666654321    00112233455566666666665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=5.8e-11  Score=104.69  Aligned_cols=105  Identities=23%  Similarity=0.297  Sum_probs=28.1

Q ss_pred             CCCCccEEEcCCCCCCCCChhhh-cccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhh-cCCCCCCEEcc
Q 048810          255 GMEGLKVLQFPGIGSSSLPSSLD-RLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDL  332 (582)
Q Consensus       255 ~l~~Lr~L~l~~~~~~~lp~~i~-~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l  332 (582)
                      +...+|.|+|+++.|+.+. .++ .+.+|+.|++++|.++..+.+..+++|++|++++|+|+.++..+ ..+++|++|++
T Consensus        17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            4445666666666666543 344 45666666666666666666666666666666666666665444 24666666666


Q ss_pred             cccccccccCc-ccccCCCcccEEEcCCCc
Q 048810          333 SNCWTLEVIAP-NVISKLSRLEELYMGNSF  361 (582)
Q Consensus       333 ~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~  361 (582)
                      ++ +.+..+.. ..+..+++|+.|++.+|+
T Consensus        96 ~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   96 SN-NKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             cC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence            66 33433221 113445555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=3.3e-10  Score=99.90  Aligned_cols=103  Identities=22%  Similarity=0.267  Sum_probs=22.9

Q ss_pred             cCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhh-hcccCccEEE
Q 048810          209 KDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-DRLINLQTLC  286 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i-~~L~~L~~L~  286 (582)
                      .+.+.|++.++.+..+.... .+.+|+.|++++|  ....+..  +..++.|+.|++++|.++++++.+ ..+++|+.|+
T Consensus        19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N--~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNN--QITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS----S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccccchhhhhcCCCEEECCCC--CCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            34556666666655543322 3444555555544  2222322  234455555555555554444333 2344555555


Q ss_pred             cCCCCCCC---ccccCCCCCccEEEeeCCCCC
Q 048810          287 LDGCRLKD---IAKVGQLKKLEVLSFRDSDIE  315 (582)
Q Consensus       287 L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~  315 (582)
                      +++|++.+   ...+..+++|++|++.+|.+.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            55554443   233444444555555444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=4.4e-11  Score=109.76  Aligned_cols=186  Identities=14%  Similarity=0.141  Sum_probs=141.9

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCc--cccccChHH-------------------hcCCCCccEE
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGL--CSIQVSDHF-------------------FEGMEGLKVL  262 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~--~~~~~~~~~-------------------~~~l~~Lr~L  262 (582)
                      ....+++..+.++.+.-+.+.... .-+.|+++.+.....  ...-+|...                   ....+.|..|
T Consensus       210 l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel  289 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTEL  289 (490)
T ss_pred             hHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence            344566677777766655444332 446677777765410  000111111                   0124678999


Q ss_pred             EcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccC
Q 048810          263 QFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIA  342 (582)
Q Consensus       263 ~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp  342 (582)
                      |||+|.|+.+-+++.-++.+|.|+++.|.+....++..|++|+.||+++|.++++..+-.++.|+++|.+.+ +.+..+.
T Consensus       290 DLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LS  368 (490)
T KOG1259|consen  290 DLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIETLS  368 (490)
T ss_pred             cccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhhhh
Confidence            999999999999999999999999999999998889999999999999999998887778899999999999 6788776


Q ss_pred             cccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcc
Q 048810          343 PNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD  400 (582)
Q Consensus       343 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  400 (582)
                      .  ++++-+|..|++++|.+...       .....+++++.|+.+.+.+|.+..+++.
T Consensus       369 G--L~KLYSLvnLDl~~N~Ie~l-------deV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  369 G--LRKLYSLVNLDLSSNQIEEL-------DEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             h--hHhhhhheeccccccchhhH-------HHhcccccccHHHHHhhcCCCccccchH
Confidence            4  88999999999999986543       2467789999999999999988766654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.84  E-value=2.7e-09  Score=109.79  Aligned_cols=171  Identities=25%  Similarity=0.233  Sum_probs=95.7

Q ss_pred             CCCCccEEEeeccCccccccChHHhcCCC-CccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccE
Q 048810          229 RCPRLGLFLLHTIGLCSIQVSDHFFEGME-GLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEV  306 (582)
Q Consensus       229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~  306 (582)
                      ..+.++.|.+..+  ....+++.. ..++ +|+.|++++|.+..+|..++.+++|+.|+++.|++.. +...+.+.+|+.
T Consensus       114 ~~~~l~~L~l~~n--~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         114 ELTNLTSLDLDNN--NITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             cccceeEEecCCc--ccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence            4455555555554  344444433 2332 5666666666666665556666666666666666666 444446666666


Q ss_pred             EEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccE
Q 048810          307 LSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTT  386 (582)
Q Consensus       307 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  386 (582)
                      |++++|.+..+|..++.+..|++|.++++. ....+.. ++.++++..+.+.++....         .+..++.+.+++.
T Consensus       191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~~---------~~~~~~~l~~l~~  259 (394)
T COG4886         191 LDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLED---------LPESIGNLSNLET  259 (394)
T ss_pred             eeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceeee---------ccchhccccccce
Confidence            666666666666655555556666666632 2222222 4556666665554443321         1345566666777


Q ss_pred             EEEEecccccCCcccccccccEEEEEe
Q 048810          387 LEIHVRYAEILPQDLVSVELQRYKMFI  413 (582)
Q Consensus       387 L~l~~~~~~~~~~~~~~~~L~~L~l~~  413 (582)
                      |++++|.+..++......+++.|+++.
T Consensus       260 L~~s~n~i~~i~~~~~~~~l~~L~~s~  286 (394)
T COG4886         260 LDLSNNQISSISSLGSLTNLRELDLSG  286 (394)
T ss_pred             eccccccccccccccccCccCEEeccC
Confidence            777777666666533556666666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=1.2e-09  Score=105.64  Aligned_cols=208  Identities=20%  Similarity=0.073  Sum_probs=143.8

Q ss_pred             HhhccCcEEEEecCCCCcCCCC---CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh--hhcc
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQ---RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS--LDRL  279 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~--i~~L  279 (582)
                      ....++++.+++.++.+...+.   ...|++++.|+++.|-.........+...+++|+.|+++.|.+...-++  -..+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            4456788999999998877764   3389999999999872222233345567899999999999987543222  2367


Q ss_pred             cCccEEEcCCCCCCC---ccccCCCCCccEEEeeCCC-CCccchhhcCCCCCCEEcccccccccccCc-ccccCCCcccE
Q 048810          280 INLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSD-IEQLPLEIGQLRRLQLLDLSNCWTLEVIAP-NVISKLSRLEE  354 (582)
Q Consensus       280 ~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~  354 (582)
                      .+|+.|.++.|.++.   ....-.+++|..|++..|. +..--.....++.|+.||+++++. ...+. ..++.++.|..
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccchhh
Confidence            799999999999886   3556678999999999984 332222345577899999999554 44441 23678999999


Q ss_pred             EEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc---ccccccEEEEEecc
Q 048810          355 LYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL---VSVELQRYKMFIGE  415 (582)
Q Consensus       355 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~  415 (582)
                      |+++.|.+.....  -...........++|+.|++..|++..++..-   .+++|+.|.+....
T Consensus       276 Lnls~tgi~si~~--~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  276 LNLSSTGIASIAE--PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             hhccccCcchhcC--CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            9998886544311  11112223456789999999999887666542   56677777654433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.78  E-value=6.5e-09  Score=106.99  Aligned_cols=178  Identities=24%  Similarity=0.248  Sum_probs=150.2

Q ss_pred             ccCcEEEEecCCCCcCCCCCCCCC--CccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEE
Q 048810          208 RKDPIAISLPYRGDQVLPQRMRCP--RLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTL  285 (582)
Q Consensus       208 ~~~~~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L  285 (582)
                      ...+..+.+.++.+..++......  +|+.|++..+  ....++..+ ..++.|+.|++++|.+..+|...+.+..|+.|
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N--~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN--KIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhccccccccc--chhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence            357899999999999999888654  8999999987  555554443 78999999999999999999988899999999


Q ss_pred             EcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          286 CLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       286 ~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      ++++|++.. |..+..+.+|++|.+++|.+.+.+..+.++.++..+.+.+ +.+..++.. ++.+++|+.|++++|.+..
T Consensus       192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceeccccccccc
Confidence            999999999 6666788889999999998888888899999999999777 566665554 7899999999999987643


Q ss_pred             ccccCCCccchhhccCCCCccEEEEEecccccCCcc
Q 048810          365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD  400 (582)
Q Consensus       365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  400 (582)
                      .          ..++.+.+++.|+++++.+...+..
T Consensus       270 i----------~~~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         270 I----------SSLGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             c----------ccccccCccCEEeccCccccccchh
Confidence            3          3388999999999999887655443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.69  E-value=2.3e-09  Score=98.65  Aligned_cols=127  Identities=24%  Similarity=0.228  Sum_probs=75.9

Q ss_pred             CCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCc-cccCCCCCccEEE
Q 048810          230 CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDI-AKVGQLKKLEVLS  308 (582)
Q Consensus       230 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~-~~~~~l~~L~~L~  308 (582)
                      ...|+++++++|  .+..+.++. .-.+.+|+|++|+|.+..+-. +..|++|+.|||++|.++.. ..-.+|-|.++|.
T Consensus       283 Wq~LtelDLS~N--~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGN--LITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhcccccc--chhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence            345666666665  344444433 456667777777777665443 66666777777777766663 2234556666777


Q ss_pred             eeCCCCCccchhhcCCCCCCEEcccccccccccCc-ccccCCCcccEEEcCCCcc
Q 048810          309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAP-NVISKLSRLEELYMGNSFK  362 (582)
Q Consensus       309 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~  362 (582)
                      +++|.+..+. +++++.+|..||+++ +++..+.. ..||+++.|+++.+.+|.+
T Consensus       359 La~N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  359 LAQNKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhhhHhhhh-hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence            7776666553 466677777777776 33433221 1266777777777776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=5.6e-09  Score=101.08  Aligned_cols=210  Identities=20%  Similarity=0.143  Sum_probs=111.7

Q ss_pred             CCCCCccEEEeeCCCCCccch--hhcCCCCCCEEcccccccccccC--cccccCCCcccEEEcCCCccccccccCCCccc
Q 048810          299 GQLKKLEVLSFRDSDIEQLPL--EIGQLRRLQLLDLSNCWTLEVIA--PNVISKLSRLEELYMGNSFKRWEKVEGGSNAS  374 (582)
Q Consensus       299 ~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  374 (582)
                      +++.+|+...+.++.+...+.  ....+++++.||++.+ -+...-  ..+..++++|+.|+++.|..... ..      
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~-~~------  189 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNF-IS------  189 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCC-cc------
Confidence            456777777787777776653  5667777777777773 332211  11234667777777766654333 00      


Q ss_pred             hhhccCCCCccEEEEEeccccc--CCccc-ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhh
Q 048810          375 LVELNGLSKLTTLEIHVRYAEI--LPQDL-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLL  451 (582)
Q Consensus       375 ~~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~  451 (582)
                      -..-..+++|+.|.++.+.++.  +...+ .+++|+.|.+..+.                     .+..   ...-...+
T Consensus       190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~---------------------~~~~---~~~~~~i~  245 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE---------------------IILI---KATSTKIL  245 (505)
T ss_pred             ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc---------------------ccce---ecchhhhh
Confidence            0001134455555555554441  00001 34444444433221                     1111   01111234


Q ss_pred             hcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeee--cccccccCCCCcccccccccccccccccccccc
Q 048810          452 QRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIV--GSVRRVGCEVFPLLETLYLIGLANLETICCSQL  529 (582)
Q Consensus       452 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~  529 (582)
                      +.|+.|+|+++..+.......  .+.||.|..|.++.| .+.++.  +.+.......||+|+.|++.. ++..+|+.  +
T Consensus       246 ~~L~~LdLs~N~li~~~~~~~--~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~s--l  319 (505)
T KOG3207|consen  246 QTLQELDLSNNNLIDFDQGYK--VGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRS--L  319 (505)
T ss_pred             hHHhhccccCCcccccccccc--cccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeeccc-Cccccccc--c
Confidence            678888888887655432111  568888888888876 333332  111112346788888888877 66666643  2


Q ss_pred             cCcccCCCccEEEEecc
Q 048810          530 REDQSFSNLRIIEVEHC  546 (582)
Q Consensus       530 ~~~~~~~~L~~L~l~~c  546 (582)
                      .++..+++|+.|.+...
T Consensus       320 ~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  320 NHLRTLENLKHLRITLN  336 (505)
T ss_pred             chhhccchhhhhhcccc
Confidence            33556677777766543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.63  E-value=1.5e-09  Score=104.51  Aligned_cols=305  Identities=17%  Similarity=0.069  Sum_probs=165.5

Q ss_pred             cCcEEEEecCCCCcCCCC---C-CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCC-CCC--CChhhhcccC
Q 048810          209 KDPIAISLPYRGDQVLPQ---R-MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIG-SSS--LPSSLDRLIN  281 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~l~~---~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~--lp~~i~~L~~  281 (582)
                      ..++.+++.++.-....+   . ..+++++.|.+.++.........++-..+++|++|++..|. ++.  +-.-...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            456777777765422222   1 26777777777766222222222333567888888888743 443  1223346778


Q ss_pred             ccEEEcCCCC-CCC--c-cccCCCCCccEEEeeCCC-C--CccchhhcCCCCCCEEcccccccccccCccccc-CCCccc
Q 048810          282 LQTLCLDGCR-LKD--I-AKVGQLKKLEVLSFRDSD-I--EQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVIS-KLSRLE  353 (582)
Q Consensus       282 L~~L~L~~~~-l~~--~-~~~~~l~~L~~L~l~~~~-l--~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~-~l~~L~  353 (582)
                      |.||++++|. +++  . .-..+...++.+.++||. +  ..+-.--+...-+..+++..|+.+++.....+. .+..||
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            8888888884 444  2 334455556666666651 1  122222234445666666677666554322122 356677


Q ss_pred             EEEcCCCccccccccCCCccchhhcc-CCCCccEEEEEeccc-ccCCcccccccccEEEEEeccccccccccccccccce
Q 048810          354 ELYMGNSFKRWEKVEGGSNASLVELN-GLSKLTTLEIHVRYA-EILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMK  431 (582)
Q Consensus       354 ~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~  431 (582)
                      .|..+++.....       ..+..++ +..+|+.|.+..++. +..                                  
T Consensus       298 ~l~~s~~t~~~d-------~~l~aLg~~~~~L~~l~l~~c~~fsd~----------------------------------  336 (483)
T KOG4341|consen  298 VLCYSSCTDITD-------EVLWALGQHCHNLQVLELSGCQQFSDR----------------------------------  336 (483)
T ss_pred             hhcccCCCCCch-------HHHHHHhcCCCceEEEeccccchhhhh----------------------------------
Confidence            777766643221       1222232 334555555543321 000                                  


Q ss_pred             ecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccc
Q 048810          432 LERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLE  511 (582)
Q Consensus       432 l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~  511 (582)
                           .      ...+..-.+.|+.+++..+..+.+.... ....++|.|++|.++.|..++.-..........+...|+
T Consensus       337 -----~------ft~l~rn~~~Le~l~~e~~~~~~d~tL~-sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~  404 (483)
T KOG4341|consen  337 -----G------FTMLGRNCPHLERLDLEECGLITDGTLA-SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE  404 (483)
T ss_pred             -----h------hhhhhcCChhhhhhcccccceehhhhHh-hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccc
Confidence                 0      0111122356677777666654443111 113468888888888876544321111112345667788


Q ss_pred             cccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeee
Q 048810          512 TLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGV  569 (582)
Q Consensus       512 ~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i  569 (582)
                      .+.+++|+.+++-.-.   ....+++|+.+++.+|.....-+.....+++|+++....
T Consensus       405 ~lEL~n~p~i~d~~Le---~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  405 VLELDNCPLITDATLE---HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             eeeecCCCCchHHHHH---HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            8888888876554322   245778888888888888777666666777887776544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.55  E-value=5.3e-09  Score=100.73  Aligned_cols=287  Identities=18%  Similarity=0.176  Sum_probs=163.4

Q ss_pred             CCccEEEcCCCCCCC---CChhhhcccCccEEEcCCC-CCCC--ccc-cCCCCCccEEEeeCC-CCC--ccchhhcCCCC
Q 048810          257 EGLKVLQFPGIGSSS---LPSSLDRLINLQTLCLDGC-RLKD--IAK-VGQLKKLEVLSFRDS-DIE--QLPLEIGQLRR  326 (582)
Q Consensus       257 ~~Lr~L~l~~~~~~~---lp~~i~~L~~L~~L~L~~~-~l~~--~~~-~~~l~~L~~L~l~~~-~l~--~lp~~i~~l~~  326 (582)
                      ..||.|.+.++.-..   +-....++++++.|.+.+| ++++  ..+ -..+++|++|++..| .++  .+-.....+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            467778888775322   3334567788888888888 4555  333 345678888888875 555  22223456788


Q ss_pred             CCEEcccccccccc--cCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEe-cccccCCccc--
Q 048810          327 LQLLDLSNCWTLEV--IAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHV-RYAEILPQDL--  401 (582)
Q Consensus       327 L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~--  401 (582)
                      |.+|+++.|..++.  +.. ...+++.++.+...+|.....      +.....=+....+.++++.. +.++......  
T Consensus       218 L~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~l------e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~  290 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELEL------EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA  290 (483)
T ss_pred             HHHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccH------HHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence            88888888876655  111 133455566666655532211      00111111222233333322 1222111110  


Q ss_pred             -ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCC
Q 048810          402 -VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPR  480 (582)
Q Consensus       402 -~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~  480 (582)
                       .+..|+.+..+.+.                     ...... -...+...++|+.|.+..|...++...... ..+++.
T Consensus       291 ~~c~~lq~l~~s~~t---------------------~~~d~~-l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~  347 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCT---------------------DITDEV-LWALGQHCHNLQVLELSGCQQFSDRGFTML-GRNCPH  347 (483)
T ss_pred             hhhhHhhhhcccCCC---------------------CCchHH-HHHHhcCCCceEEEeccccchhhhhhhhhh-hcCChh
Confidence             23344444332222                     111100 011222247888999988887665443332 457889


Q ss_pred             CcEEEEeecCCceeeecccccccCCCCccccccccccccccccccccccc-CcccCCCccEEEEecccCcccccChhHHh
Q 048810          481 LKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLR-EDQSFSNLRIIEVEHCNKLKHLFSFSMAK  559 (582)
Q Consensus       481 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~-~~~~~~~L~~L~l~~c~~L~~l~~~~~~~  559 (582)
                      |+.+++.+|....   +..........|.|++|.++.|...++...-.+. ...++..|+.+.+.+||.+++-.- ..+.
T Consensus       348 Le~l~~e~~~~~~---d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e~l~  423 (483)
T KOG4341|consen  348 LERLDLEECGLIT---DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-EHLS  423 (483)
T ss_pred             hhhhcccccceeh---hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-HHHh
Confidence            9999999885332   2222335678899999999988876655221121 134677899999999998766432 4557


Q ss_pred             hhhhcceeeeccCcchHH
Q 048810          560 NLLWLQKVGVEECDELKM  577 (582)
Q Consensus       560 ~l~~L~~L~i~~C~~L~~  577 (582)
                      .++.|+.+++-+|..+.+
T Consensus       424 ~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  424 ICRNLERIELIDCQDVTK  441 (483)
T ss_pred             hCcccceeeeechhhhhh
Confidence            788999999999987653

>PLN03150 hypothetical protein; Provisional

Probab=98.53  E-value=2.3e-07  Score=100.29  Aligned_cols=101  Identities=21%  Similarity=0.402  Sum_probs=53.7

Q ss_pred             ccEEEcCCCCCCC-CChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCC-ccchhhcCCCCCCEEcccc
Q 048810          259 LKVLQFPGIGSSS-LPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQLLDLSN  334 (582)
Q Consensus       259 Lr~L~l~~~~~~~-lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~  334 (582)
                      ++.|+|+++.+.. +|..++.+++|++|+|++|.+.+  |..++.+++|+.|++++|.+. .+|..++++++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            4555555555543 55555555666666666555554  445555556666666555555 4555555555666666555


Q ss_pred             cccccccCcccccC-CCcccEEEcCCC
Q 048810          335 CWTLEVIAPNVISK-LSRLEELYMGNS  360 (582)
Q Consensus       335 ~~~l~~lp~~~l~~-l~~L~~L~l~~~  360 (582)
                      |...+.+|.. ++. ..++..+++.+|
T Consensus       500 N~l~g~iP~~-l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        500 NSLSGRVPAA-LGGRLLHRASFNFTDN  525 (623)
T ss_pred             CcccccCChH-HhhccccCceEEecCC
Confidence            4444445543 332 234444444444

>PLN03150 hypothetical protein; Provisional

Probab=98.48  E-value=3.7e-07  Score=98.61  Aligned_cols=109  Identities=17%  Similarity=0.244  Sum_probs=92.1

Q ss_pred             CccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCC-CCChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEE
Q 048810          232 RLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLS  308 (582)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~  308 (582)
                      .++.|++.++ .....+|..+ ..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+..  |..++++++|++|+
T Consensus       419 ~v~~L~L~~n-~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQ-GLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCC-CccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence            4778888887 4555677664 89999999999999997 589999999999999999999987  78899999999999


Q ss_pred             eeCCCCC-ccchhhcCC-CCCCEEcccccccccccC
Q 048810          309 FRDSDIE-QLPLEIGQL-RRLQLLDLSNCWTLEVIA  342 (582)
Q Consensus       309 l~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~l~~lp  342 (582)
                      +++|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9999988 899888764 577888888866555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.43  E-value=2.1e-07  Score=67.27  Aligned_cols=56  Identities=25%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             CccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCC
Q 048810          258 GLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSD  313 (582)
Q Consensus       258 ~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~  313 (582)
                      +|++|++++|.++.+| ..+..+++|++|++++|.++.  +..+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4555555555555544 244555555555555555554  2445555555555555553

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=8.6e-09  Score=94.91  Aligned_cols=64  Identities=22%  Similarity=0.179  Sum_probs=34.8

Q ss_pred             CCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEeccc
Q 048810          477 GFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCN  547 (582)
Q Consensus       477 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~  547 (582)
                      .+|+|..|++++|..++.  +.  ......|+.|++|.++.|-.+   +...+.+...+|+|.+|++.+|-
T Consensus       311 rcp~l~~LDLSD~v~l~~--~~--~~~~~kf~~L~~lSlsRCY~i---~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKN--DC--FQEFFKFNYLQHLSLSRCYDI---IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hCCceeeeccccccccCc--hH--HHHHHhcchheeeehhhhcCC---ChHHeeeeccCcceEEEEecccc
Confidence            566666666666654433  11  113445666666666665432   22223346667777777777763

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.34  E-value=5.1e-08  Score=92.07  Aligned_cols=252  Identities=20%  Similarity=0.130  Sum_probs=138.2

Q ss_pred             cCCCCccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCC---CCC--c-------cccCCCCCccEEEeeCCCCC-
Q 048810          254 EGMEGLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCR---LKD--I-------AKVGQLKKLEVLSFRDSDIE-  315 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~---l~~--~-------~~~~~l~~L~~L~l~~~~l~-  315 (582)
                      ..+..+..++|++|.+..     +.+.+.+.++|+..+++.--   ...  |       +.+-..++|++|+||.|.+. 
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            567888899999988753     44556667778877776532   221  2       22334557777777777444 


Q ss_pred             ----ccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEe
Q 048810          316 ----QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHV  391 (582)
Q Consensus       316 ----~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  391 (582)
                          .+-.-+..+..|++|.|.+| .++......++  ..|++|.                 .....+.-++||.+....
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~--~al~~l~-----------------~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLG--RALFELA-----------------VNKKAASKPKLRVFICGR  166 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHH--HHHHHHH-----------------HHhccCCCcceEEEEeec
Confidence                22223555666777777664 22221111111  1122222                 122344556788888888


Q ss_pred             cccccCCccc------ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCc
Q 048810          392 RYAEILPQDL------VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGV  465 (582)
Q Consensus       392 ~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~  465 (582)
                      |.+.+-+...      .++.|+.+++..+...+.                 ....+  ...+. .+++|+.|+|++|...
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e-----------------G~~al--~eal~-~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE-----------------GVTAL--AEALE-HCPHLEVLDLRDNTFT  226 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCc-----------------hhHHH--HHHHH-hCCcceeeecccchhh
Confidence            8776655442      456677776655443000                 00000  11112 2588999999988754


Q ss_pred             ccccccc-cCCCCCCCCcEEEEeecCCceeeecccccc-cCCCCccccccccccccccccccccccc-CcccCCCccEEE
Q 048810          466 PSVVHEL-DDGEGFPRLKHLYVESCSEILHIVGSVRRV-GCEVFPLLETLYLIGLANLETICCSQLR-EDQSFSNLRIIE  542 (582)
Q Consensus       466 ~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~L~~~~~~~~~-~~~~~~~L~~L~  542 (582)
                      ......+ ..+..+|+|++|.+.+|- ++.-....+.. ....+|+|++|.+.++ .++.-....+. .....|.|++|+
T Consensus       227 ~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLn  304 (382)
T KOG1909|consen  227 LEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLN  304 (382)
T ss_pred             hHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhc
Confidence            3322111 014478899999999983 33211111111 2345899999998883 33321111110 134588999999


Q ss_pred             Eeccc
Q 048810          543 VEHCN  547 (582)
Q Consensus       543 l~~c~  547 (582)
                      +++|.
T Consensus       305 LngN~  309 (382)
T KOG1909|consen  305 LNGNR  309 (382)
T ss_pred             CCccc
Confidence            99983

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.33  E-value=4.4e-07  Score=65.58  Aligned_cols=60  Identities=23%  Similarity=0.331  Sum_probs=52.0

Q ss_pred             CCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCC
Q 048810          231 PRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRL  292 (582)
Q Consensus       231 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l  292 (582)
                      ++|+.|++.+|  ....++...|.++++|++|++++|.++.+| ..+..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n--~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNN--KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSS--TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCC--CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46888888887  667888888999999999999999998876 4789999999999999874

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.9e-08  Score=92.65  Aligned_cols=175  Identities=19%  Similarity=0.170  Sum_probs=118.7

Q ss_pred             cCcEEEEecCCCCcC--CCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCC-CCC--CChhhhcccCc
Q 048810          209 KDPIAISLPYRGDQV--LPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIG-SSS--LPSSLDRLINL  282 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~--lp~~i~~L~~L  282 (582)
                      .++++++++...++.  +.... .|++|+.|.+.+. .....+...+ .+-.+|+.|+++.+. ++.  +---+.+|+.|
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhH
Confidence            457888888776632  22222 6788888888876 3333444444 677899999999885 443  22346788899


Q ss_pred             cEEEcCCCCCCCc--cc-c-CCCCCccEEEeeCCC----CCccchhhcCCCCCCEEcccccccccccCcccccCCCcccE
Q 048810          283 QTLCLDGCRLKDI--AK-V-GQLKKLEVLSFRDSD----IEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEE  354 (582)
Q Consensus       283 ~~L~L~~~~l~~~--~~-~-~~l~~L~~L~l~~~~----l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~  354 (582)
                      ..|++++|.+..+  .. + .--.+|..|+++|+.    ...+..-..++++|.+||+++|..++.--...+.+++.|++
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            9999999976652  11 1 112578888999872    22444556788999999999987776522234778999999


Q ss_pred             EEcCCCccccccccCCCccchhhccCCCCccEEEEEec
Q 048810          355 LYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVR  392 (582)
Q Consensus       355 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  392 (582)
                      |.++.|...-.       ...-++...+.|.+|++.+.
T Consensus       343 lSlsRCY~i~p-------~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  343 LSLSRCYDIIP-------ETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eehhhhcCCCh-------HHeeeeccCcceEEEEeccc
Confidence            99999874322       23456777888888888754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.27  E-value=8.1e-09  Score=105.86  Aligned_cols=178  Identities=20%  Similarity=0.130  Sum_probs=115.1

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCC-CCccEEEeeccC--------ccccccChHHhcCCCCccEEEcCCCCCCCCChh
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRC-PRLGLFLLHTIG--------LCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS  275 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~-~~L~~L~l~~~~--------~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~  275 (582)
                      +...+.+|+|-+.++.+........+ ..|+.|+..+.-        ...+.+.+..  ....|.+-+.++|.+..+-.+
T Consensus       105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~S  182 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDES  182 (1096)
T ss_pred             eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHH
Confidence            44467889999998888654332221 245555554320        0011111111  124566777777777777777


Q ss_pred             hhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEE
Q 048810          276 LDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEEL  355 (582)
Q Consensus       276 i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L  355 (582)
                      +.-++.|+.|+|+.|+++....+..+++|++|||+.|.++.+|.--..-..|+.|.+++ +.++.+-.  +.+|++|+.|
T Consensus       183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~g--ie~LksL~~L  259 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLRG--IENLKSLYGL  259 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecc-cHHHhhhh--HHhhhhhhcc
Confidence            88888888888888888887788888888888888888887775311223488888887 56666653  6788888888


Q ss_pred             EcCCCccccccccCCCccchhhccCCCCccEEEEEeccc
Q 048810          356 YMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYA  394 (582)
Q Consensus       356 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  394 (582)
                      ++++|.+...       ..+..+..|..|+.|.+.+|.+
T Consensus       260 DlsyNll~~h-------seL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  260 DLSYNLLSEH-------SELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             chhHhhhhcc-------hhhhHHHHHHHHHHHhhcCCcc
Confidence            8887754332       2344556667777788877754

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.20  E-value=7.5e-07  Score=95.98  Aligned_cols=128  Identities=22%  Similarity=0.257  Sum_probs=94.8

Q ss_pred             HhhccCcEEEEecCCCC--cCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhccc
Q 048810          205 ETIRKDPIAISLPYRGD--QVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLI  280 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~--~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~  280 (582)
                      .....++++|++++...  ..++..  .-+|.|++|.+.+....... -..++.++++|+.||+|+++++.+ ..+++|+
T Consensus       118 ~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk  195 (699)
T KOG3665|consen  118 EESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLK  195 (699)
T ss_pred             HHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence            33456788888887554  333332  27899999999876222222 234567899999999999999988 6899999


Q ss_pred             CccEEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccchh-------hcCCCCCCEEcccc
Q 048810          281 NLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLPLE-------IGQLRRLQLLDLSN  334 (582)
Q Consensus       281 ~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~-------i~~l~~L~~L~l~~  334 (582)
                      +|+.|.+++-.+..   ...+.+|++|++||+|...-..-+.-       -..||+|+.||.++
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            99999999988776   57899999999999998744433321       13477888888876

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.16  E-value=3.7e-07  Score=94.23  Aligned_cols=104  Identities=27%  Similarity=0.363  Sum_probs=49.6

Q ss_pred             cCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEccc
Q 048810          254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS  333 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  333 (582)
                      ..+++|..|++.+|.+.++...+..+++|++|++++|.|+....+..+..|+.|++++|.++.+.. +..+++|+.++++
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLS  170 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-CccchhhhcccCC
Confidence            344555555555555554443344555555555555555555555555555555555555544432 3334555555555


Q ss_pred             ccccccccCc-ccccCCCcccEEEcCCC
Q 048810          334 NCWTLEVIAP-NVISKLSRLEELYMGNS  360 (582)
Q Consensus       334 ~~~~l~~lp~-~~l~~l~~L~~L~l~~~  360 (582)
                      + +.+..+.. . ...+.+|+.+.+.+|
T Consensus       171 ~-n~i~~ie~~~-~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  171 Y-NRIVDIENDE-LSELISLEELDLGGN  196 (414)
T ss_pred             c-chhhhhhhhh-hhhccchHHHhccCC
Confidence            5 23333332 1 134444444444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=2.7e-06  Score=56.25  Aligned_cols=37  Identities=32%  Similarity=0.453  Sum_probs=21.5

Q ss_pred             CccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC
Q 048810          258 GLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD  294 (582)
Q Consensus       258 ~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~  294 (582)
                      +|++|++++|.++.+|..+++|++|++|++++|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            4566666666666666556666666666666665554

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.13  E-value=1.7e-07  Score=88.52  Aligned_cols=17  Identities=6%  Similarity=-0.214  Sum_probs=11.1

Q ss_pred             HhhccCcEEEEecCCCC
Q 048810          205 ETIRKDPIAISLPYRGD  221 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~  221 (582)
                      ......+..+++++|.+
T Consensus        26 ~~~~~s~~~l~lsgnt~   42 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTF   42 (382)
T ss_pred             hcccCceEEEeccCCch
Confidence            33455677777777766

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.11  E-value=3.3e-07  Score=94.53  Aligned_cols=183  Identities=21%  Similarity=0.193  Sum_probs=116.1

Q ss_pred             EEEecCCCCcCCCC-CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCC
Q 048810          213 AISLPYRGDQVLPQ-RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCR  291 (582)
Q Consensus       213 ~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~  291 (582)
                      .+++..+.+..... ...+.++..|++..+  .+..+... +..+.+|++|++++|.|+++. .+..+..|+.|++.+|.
T Consensus        76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n--~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   76 ELNLRQNLIAKILNHLSKLKSLEALDLYDN--KIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL  151 (414)
T ss_pred             hhccchhhhhhhhcccccccceeeeecccc--chhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCc
Confidence            33355555544222 235677777777765  33333331 356889999999999988875 47778889999999999


Q ss_pred             CCCccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCC
Q 048810          292 LKDIAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGG  370 (582)
Q Consensus       292 l~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~  370 (582)
                      ++.+..+..+.+|+.+++++|.+..+... ...+.+|+.+.+.+ +.+..+..  +..+..+..+++..+.+..      
T Consensus       152 i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~~------  222 (414)
T KOG0531|consen  152 ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKISK------  222 (414)
T ss_pred             chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhccccccee------
Confidence            88888888899999999999988877664 57788888888888 44444332  3344444444555544322      


Q ss_pred             CccchhhccCCCC--ccEEEEEecccccCCccc-ccccccEEEEE
Q 048810          371 SNASLVELNGLSK--LTTLEIHVRYAEILPQDL-VSVELQRYKMF  412 (582)
Q Consensus       371 ~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~  412 (582)
                          ...+..+..  |+.+.+..|.+...+..+ .+..+..|++.
T Consensus       223 ----~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~  263 (414)
T KOG0531|consen  223 ----LEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLS  263 (414)
T ss_pred             ----ccCcccchhHHHHHHhcccCccccccccccccccccccchh
Confidence                122222222  677777777766653222 44455555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=4.8e-07  Score=83.62  Aligned_cols=58  Identities=21%  Similarity=0.252  Sum_probs=29.6

Q ss_pred             CccEEEcCCCCCCCCC--hhhh-cccCccEEEcCCCCCCCc----cccCCCCCccEEEeeCCCCC
Q 048810          258 GLKVLQFPGIGSSSLP--SSLD-RLINLQTLCLDGCRLKDI----AKVGQLKKLEVLSFRDSDIE  315 (582)
Q Consensus       258 ~Lr~L~l~~~~~~~lp--~~i~-~L~~L~~L~L~~~~l~~~----~~~~~l~~L~~L~l~~~~l~  315 (582)
                      .+..|.+.++.|...-  ..++ ..++++.|||.+|.++..    ..+.+|+.|++|+++.|.+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~  110 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS  110 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence            3345555555553321  2222 345666677777666652    22345566666666655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.90  E-value=1.9e-05  Score=52.17  Aligned_cols=32  Identities=41%  Similarity=0.650  Sum_probs=16.2

Q ss_pred             CccEEEeeCCCCCccchhhcCCCCCCEEcccc
Q 048810          303 KLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSN  334 (582)
Q Consensus       303 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~  334 (582)
                      +|++|++++|+++.+|..+++|++|++|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~   33 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN   33 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence            45555555555555555555555555555555

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.80  E-value=4.7e-05  Score=75.84  Aligned_cols=12  Identities=17%  Similarity=0.191  Sum_probs=6.5

Q ss_pred             CcccEEEcCCCc
Q 048810          350 SRLEELYMGNSF  361 (582)
Q Consensus       350 ~~L~~L~l~~~~  361 (582)
                      ++|++|.+.+|.
T Consensus       156 sSLk~L~Is~c~  167 (426)
T PRK15386        156 PSLKTLSLTGCS  167 (426)
T ss_pred             CcccEEEecCCC
Confidence            355566655544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=1.5e-05  Score=86.01  Aligned_cols=135  Identities=19%  Similarity=0.218  Sum_probs=66.1

Q ss_pred             CCccEEEcCCCCC--CCCChhhh-cccCccEEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEE
Q 048810          257 EGLKVLQFPGIGS--SSLPSSLD-RLINLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLL  330 (582)
Q Consensus       257 ~~Lr~L~l~~~~~--~~lp~~i~-~L~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L  330 (582)
                      .+|++|++++...  ..=|..++ -|++|+.|.+.+-.+..   ..-..++++|..||+++++++.+ .++++|++|++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            4566666655432  11122222 35566666666655433   23344566666666666666655 556666666666


Q ss_pred             cccccccccccC-cccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810          331 DLSNCWTLEVIA-PNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE  395 (582)
Q Consensus       331 ~l~~~~~l~~lp-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  395 (582)
                      .+.+-. +..-. -..+.+|++|+.|+++........  .......+.-..|++||.|+++++.+.
T Consensus       201 ~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  201 SMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hccCCC-CCchhhHHHHhcccCCCeeeccccccccch--HHHHHHHHhcccCccccEEecCCcchh
Confidence            665522 21111 001456666666666654322210  000011222234667777777765543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=9.1e-06  Score=75.39  Aligned_cols=82  Identities=26%  Similarity=0.327  Sum_probs=61.2

Q ss_pred             cCCCCccEEEcCCCCCCC---CChhhhcccCccEEEcCCCCCCC-cccc-CCCCCccEEEeeCCCCC--ccchhhcCCCC
Q 048810          254 EGMEGLKVLQFPGIGSSS---LPSSLDRLINLQTLCLDGCRLKD-IAKV-GQLKKLEVLSFRDSDIE--QLPLEIGQLRR  326 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~~~~~---lp~~i~~L~~L~~L~L~~~~l~~-~~~~-~~l~~L~~L~l~~~~l~--~lp~~i~~l~~  326 (582)
                      +....++.|||.+|.+++   +...+.+|++|++|+++.|++.. +... --+.+|++|-+.++.+.  ........++.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            567788888998888765   44556788889999999888877 5555 36678888888888554  55666677777


Q ss_pred             CCEEccccc
Q 048810          327 LQLLDLSNC  335 (582)
Q Consensus       327 L~~L~l~~~  335 (582)
                      ++.|.++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            777777763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.67  E-value=3.9e-06  Score=68.77  Aligned_cols=108  Identities=15%  Similarity=0.111  Sum_probs=70.8

Q ss_pred             cEEEEecCCCCcCCCCC----CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEE
Q 048810          211 PIAISLPYRGDQVLPQR----MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLC  286 (582)
Q Consensus       211 ~~~l~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~  286 (582)
                      ...++++.|.+..++..    ....+|....+++|  ....+|+.+-.+++.++.|++++|.+.++|..+..++.||.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N--~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN--GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccc--hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            34455555555433332    13445555666655  4445666665666677777777777777777777777777777


Q ss_pred             cCCCCCCC-ccccCCCCCccEEEeeCCCCCccchh
Q 048810          287 LDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLE  320 (582)
Q Consensus       287 L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~  320 (582)
                      ++.|++.. |..+-.|.+|-+|+..++.+..+|-.
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            77777766 66666677777777777777777665

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.66  E-value=0.00019  Score=71.69  Aligned_cols=73  Identities=18%  Similarity=0.143  Sum_probs=52.5

Q ss_pred             hccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCC-CCCCCChhhhcccCccEE
Q 048810          207 IRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGI-GSSSLPSSLDRLINLQTL  285 (582)
Q Consensus       207 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~lp~~i~~L~~L~~L  285 (582)
                      ....+++|++++|.+..+|.  --++|+.|.+.++ .....+|+.+   ..+|++|++++| .+..+|.+      |+.|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc-~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L  117 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV--LPNELTEITIENC-NNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSL  117 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCC-CCcccCCchh---hhhhhheEccCcccccccccc------cceE
Confidence            34678899999999888883  2346999999886 4455566544   368999999988 67777754      5666


Q ss_pred             EcCCCC
Q 048810          286 CLDGCR  291 (582)
Q Consensus       286 ~L~~~~  291 (582)
                      ++.++.
T Consensus       118 ~L~~n~  123 (426)
T PRK15386        118 EIKGSA  123 (426)
T ss_pred             EeCCCC
Confidence            666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.65  E-value=1.4e-06  Score=90.00  Aligned_cols=79  Identities=27%  Similarity=0.330  Sum_probs=37.7

Q ss_pred             cCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCC-CCCccEEEeeCCCCCccchhhcCCCCCCEEcc
Q 048810          254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQ-LKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL  332 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~-l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  332 (582)
                      .-++.|+.|+|++|++++.- .+..|.+|++|||++|.+...+.++. -.+|+.|.+++|.++++- +|.+|.+|+.||+
T Consensus       184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LDl  261 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLDL  261 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccch
Confidence            33445555555555554433 44555555555555555544211111 122555555555555443 2555555555555


Q ss_pred             cc
Q 048810          333 SN  334 (582)
Q Consensus       333 ~~  334 (582)
                      ++
T Consensus       262 sy  263 (1096)
T KOG1859|consen  262 SY  263 (1096)
T ss_pred             hH
Confidence            54

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.51  E-value=0.00018  Score=63.27  Aligned_cols=123  Identities=20%  Similarity=0.332  Sum_probs=72.7

Q ss_pred             ccEEEcCCCCCCCCChhhh-cccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCC-CCCCEEcccccc
Q 048810          259 LKVLQFPGIGSSSLPSSLD-RLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQL-RRLQLLDLSNCW  336 (582)
Q Consensus       259 Lr~L~l~~~~~~~lp~~i~-~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l-~~L~~L~l~~~~  336 (582)
                      =+.+++.+..+...-. ++ -+.+...+||+.|.+.....+..+..|.+|.+.+|+|+.+-+.+..+ ++|+.|.+.+| 
T Consensus        21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-   98 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-   98 (233)
T ss_pred             ccccccccccccchhh-ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-
Confidence            3455665555433221 22 13356777888888777777788888888888888888776666554 66888887773 


Q ss_pred             cccc---cCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEE
Q 048810          337 TLEV---IAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH  390 (582)
Q Consensus       337 ~l~~---lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  390 (582)
                      .+.+   +.+  +..+++|++|.+-+|.....     ..-..--+..+++|+.|+.+
T Consensus        99 si~~l~dl~p--La~~p~L~~Ltll~Npv~~k-----~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen   99 SIQELGDLDP--LASCPKLEYLTLLGNPVEHK-----KNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             chhhhhhcch--hccCCccceeeecCCchhcc-----cCceeEEEEecCcceEeehh
Confidence            3333   333  45666777777666543211     11112234455666666655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.46  E-value=1.1e-05  Score=66.23  Aligned_cols=102  Identities=19%  Similarity=0.257  Sum_probs=58.8

Q ss_pred             CCccEEEcCCCCCCCCCh---hhhcccCccEEEcCCCCCCC-ccccC-CCCCccEEEeeCCCCCccchhhcCCCCCCEEc
Q 048810          257 EGLKVLQFPGIGSSSLPS---SLDRLINLQTLCLDGCRLKD-IAKVG-QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLD  331 (582)
Q Consensus       257 ~~Lr~L~l~~~~~~~lp~---~i~~L~~L~~L~L~~~~l~~-~~~~~-~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  331 (582)
                      +.+-.++|++|.+..+++   .+....+|...+|++|.++. |+.+. +.+..++|++++|.++.+|.++..++.|+.|+
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            345566777776654443   44455566666777777666 44433 34466666666666666666666666666666


Q ss_pred             ccccccccccCcccccCCCcccEEEcCCC
Q 048810          332 LSNCWTLEVIAPNVISKLSRLEELYMGNS  360 (582)
Q Consensus       332 l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (582)
                      ++. +.+...|.- +..|.+|-.|+..++
T Consensus       107 l~~-N~l~~~p~v-i~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen  107 LRF-NPLNAEPRV-IAPLIKLDMLDSPEN  133 (177)
T ss_pred             ccc-CccccchHH-HHHHHhHHHhcCCCC
Confidence            666 344444443 334555544444433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.41  E-value=0.00026  Score=62.31  Aligned_cols=81  Identities=23%  Similarity=0.317  Sum_probs=44.1

Q ss_pred             cCCCCccEEEcCCCCCCCCChhhhc-ccCccEEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccchh----hcCCC
Q 048810          254 EGMEGLKVLQFPGIGSSSLPSSLDR-LINLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLPLE----IGQLR  325 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~~~~~lp~~i~~-L~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~----i~~l~  325 (582)
                      ..++.|..|.+++|.|+.+-..+.. +++|..|.|.+|.+..   ...+..+++|++|.+-+|.++..+..    +.+++
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp  140 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP  140 (233)
T ss_pred             CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence            4555555566666655554433333 3345666666655544   34444555666666666655543332    45666


Q ss_pred             CCCEEcccc
Q 048810          326 RLQLLDLSN  334 (582)
Q Consensus       326 ~L~~L~l~~  334 (582)
                      +|++||..+
T Consensus       141 ~l~~LDF~k  149 (233)
T KOG1644|consen  141 SLRTLDFQK  149 (233)
T ss_pred             cceEeehhh
Confidence            677766654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.30  E-value=8.7e-05  Score=68.14  Aligned_cols=251  Identities=19%  Similarity=0.111  Sum_probs=119.3

Q ss_pred             cCCCCccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCC---CCC--c-------cccCCCCCccEEEeeCCCCC-
Q 048810          254 EGMEGLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCR---LKD--I-------AKVGQLKKLEVLSFRDSDIE-  315 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~---l~~--~-------~~~~~l~~L~~L~l~~~~l~-  315 (582)
                      ..+..+..++||+|.|..     +...|.+-.+|+..+++.--   ...  +       +.+-++++|+..++|.|.+. 
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            347777888888887754     44445555667777665432   111  1       33455667777777766444 


Q ss_pred             ccc----hhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEe
Q 048810          316 QLP----LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHV  391 (582)
Q Consensus       316 ~lp----~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  391 (582)
                      +.|    ..|.+-+.|.||.+++ +.++.+..+-++  +.|++|-                 ......+.+.|+...+..
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~N-nGlGp~aG~rig--kal~~la-----------------~nKKaa~kp~Le~vicgr  166 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNN-NGLGPIAGGRIG--KALFHLA-----------------YNKKAADKPKLEVVICGR  166 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeec-CCCCccchhHHH--HHHHHHH-----------------HHhhhccCCCceEEEecc
Confidence            222    2345556666666666 334433222111  1111111                 122334556677777777


Q ss_pred             cccccCCccc------ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCc
Q 048810          392 RYAEILPQDL------VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGV  465 (582)
Q Consensus       392 ~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~  465 (582)
                      |++.+.+...      ...+|+.+++..+...+..      ...+-            ...... .++|+.|+|.+|...
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpeg------v~~L~------------~~gl~y-~~~LevLDlqDNtft  227 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEG------VTMLA------------FLGLFY-SHSLEVLDLQDNTFT  227 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcch------hHHHH------------HHHHHH-hCcceeeeccccchh
Confidence            7666555442      3346666666555431110      00000            001111 366777777766532


Q ss_pred             cccccccc-CCCCCCCCcEEEEeecCCceeeecccc---cccCCCCcccccccccccc----cccccccccccCcccCCC
Q 048810          466 PSVVHELD-DGEGFPRLKHLYVESCSEILHIVGSVR---RVGCEVFPLLETLYLIGLA----NLETICCSQLREDQSFSN  537 (582)
Q Consensus       466 ~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~----~L~~~~~~~~~~~~~~~~  537 (582)
                      ..-...+. .+..++.|++|.+.+|- +..- +...   .+...-+|+|..|....-.    -+..+.-..+ +.+++|-
T Consensus       228 ~~gS~~La~al~~W~~lrEL~lnDCl-ls~~-G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~-e~~~~p~  304 (388)
T COG5238         228 LEGSRYLADALCEWNLLRELRLNDCL-LSNE-GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEF-EQDAVPL  304 (388)
T ss_pred             hhhHHHHHHHhcccchhhhccccchh-hccc-cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhh-hhcccHH
Confidence            22111110 02355667777777772 1111 1100   1133455666666654311    0111111111 2566777


Q ss_pred             ccEEEEecc
Q 048810          538 LRIIEVEHC  546 (582)
Q Consensus       538 L~~L~l~~c  546 (582)
                      |..|.+.++
T Consensus       305 L~~le~ngN  313 (388)
T COG5238         305 LVDLERNGN  313 (388)
T ss_pred             HHHHHHccC
Confidence            777777765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.19  E-value=0.00026  Score=65.11  Aligned_cols=116  Identities=14%  Similarity=0.013  Sum_probs=59.6

Q ss_pred             hcccceeeccccCcccc--cccccCCCCCCCCcEEEEeecCCceeeecccc-cccCCCCcccccccccccccccccccc-
Q 048810          452 QRTEDLWLETLEGVPSV--VHELDDGEGFPRLKHLYVESCSEILHIVGSVR-RVGCEVFPLLETLYLIGLANLETICCS-  527 (582)
Q Consensus       452 ~~L~~L~L~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~L~~~~~~-  527 (582)
                      .+|+.+.+..|..-..-  .-.+..+..+.+|+.|+|.++..-..  ++.. .......+.|+.|.+.+|---..-... 
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~--gS~~La~al~~W~~lrEL~lnDClls~~G~~~v  262 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE--GSRYLADALCEWNLLRELRLNDCLLSNEGVKSV  262 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh--hHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence            57778887766532221  01111133578999999999742211  1100 112345567999999887521110000 


Q ss_pred             --cccCcccCCCccEEEEecccCcc----c--ccChhHHhhhhhcceeeecc
Q 048810          528 --QLREDQSFSNLRIIEVEHCNKLK----H--LFSFSMAKNLLWLQKVGVEE  571 (582)
Q Consensus       528 --~~~~~~~~~~L~~L~l~~c~~L~----~--l~~~~~~~~l~~L~~L~i~~  571 (582)
                        .+. ...+|+|..|...+...-.    .  ++.. .-..+|-|..|.+.+
T Consensus       263 ~~~f~-e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~-e~~~~p~L~~le~ng  312 (388)
T COG5238         263 LRRFN-EKFVPNLMPLPGDYNERRGGIILDISLNEF-EQDAVPLLVDLERNG  312 (388)
T ss_pred             HHHhh-hhcCCCccccccchhhhcCceeeeechhhh-hhcccHHHHHHHHcc
Confidence              011 3456888888777764311    1  2211 112466666666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=4.8e-05  Score=70.04  Aligned_cols=100  Identities=24%  Similarity=0.282  Sum_probs=52.4

Q ss_pred             CCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccch--hhcCCCCCCEEccc
Q 048810          256 MEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPL--EIGQLRRLQLLDLS  333 (582)
Q Consensus       256 l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~  333 (582)
                      +.+.+.|+.-++.++++. ....++.|++|.|+-|+++....+..+++|+.|+|+.|.|..+-+  .+.++++|++|.+.
T Consensus        18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            344555555555555432 233455666666666666665556666666666666665554432  34555666666555


Q ss_pred             ccccccccCcc----cccCCCcccEEE
Q 048810          334 NCWTLEVIAPN----VISKLSRLEELY  356 (582)
Q Consensus       334 ~~~~l~~lp~~----~l~~l~~L~~L~  356 (582)
                      .|...+.-+..    .+..|++|+.|+
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhcc
Confidence            54444433322    233455555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.92  E-value=0.00019  Score=76.13  Aligned_cols=38  Identities=32%  Similarity=0.461  Sum_probs=16.8

Q ss_pred             CCCCCEEcccccccccccCccccc-CCCcccEEEcCCCc
Q 048810          324 LRRLQLLDLSNCWTLEVIAPNVIS-KLSRLEELYMGNSF  361 (582)
Q Consensus       324 l~~L~~L~l~~~~~l~~lp~~~l~-~l~~L~~L~l~~~~  361 (582)
                      +++|+.|+++.|..+++.--..+. .+++|++|.+.+|.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS  280 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence            355555555554433332211122 24555555554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=7.9e-05  Score=68.67  Aligned_cols=98  Identities=21%  Similarity=0.180  Sum_probs=70.3

Q ss_pred             CCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC---ccccCCCCCccE
Q 048810          230 CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD---IAKVGQLKKLEV  306 (582)
Q Consensus       230 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~---~~~~~~l~~L~~  306 (582)
                      +.+.+.|++.+++  ...+  .+..+|+.|++|.||-|.|+.+. .+..|++|+.|.|+.|.|.+   +..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~--L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCG--LDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCC--ccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            4566777777762  2222  34578899999999999888875 47888899999999888877   466788888888


Q ss_pred             EEeeCCCCC-ccch-----hhcCCCCCCEEcc
Q 048810          307 LSFRDSDIE-QLPL-----EIGQLRRLQLLDL  332 (582)
Q Consensus       307 L~l~~~~l~-~lp~-----~i~~l~~L~~L~l  332 (582)
                      |.|..|... +-+.     -+.-|+||+.||=
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhccC
Confidence            888876333 2221     2456788888863

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.80  E-value=0.0005  Score=63.25  Aligned_cols=54  Identities=24%  Similarity=0.369  Sum_probs=23.4

Q ss_pred             CccEEEcCCCCCCCccccCCCCCccEEEeeCC--CCC-ccchhhcCCCCCCEEcccc
Q 048810          281 NLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDS--DIE-QLPLEIGQLRRLQLLDLSN  334 (582)
Q Consensus       281 ~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~--~l~-~lp~~i~~l~~L~~L~l~~  334 (582)
                      .|+.|++.++.++....+..|++|++|.++.|  ++. .++..+.++++|++|++++
T Consensus        44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~  100 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG  100 (260)
T ss_pred             chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC
Confidence            34444444444444444444444444544444  222 3333333344455554444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.77  E-value=0.0004  Score=63.90  Aligned_cols=101  Identities=25%  Similarity=0.321  Sum_probs=56.6

Q ss_pred             CCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCC--CCCC--ccccCCCCCccEEEeeCCCCC---ccchhhcCCCCC
Q 048810          255 GMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGC--RLKD--IAKVGQLKKLEVLSFRDSDIE---QLPLEIGQLRRL  327 (582)
Q Consensus       255 ~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~--~l~~--~~~~~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L  327 (582)
                      .+..|..|++.+..++.+. .+..|++|++|.++.|  .+..  .....++++|++|++++|++.   .+++ +..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcch
Confidence            3445555555555544322 2335667788888777  3333  344455578888888887665   3332 5666777


Q ss_pred             CEEccccccccc--ccCcccccCCCcccEEEc
Q 048810          328 QLLDLSNCWTLE--VIAPNVISKLSRLEELYM  357 (582)
Q Consensus       328 ~~L~l~~~~~l~--~lp~~~l~~l~~L~~L~l  357 (582)
                      ..|++.+|....  .--...+.-+++|..|+-
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            777777764322  111123445566666653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.14  E-value=0.0016  Score=68.90  Aligned_cols=88  Identities=23%  Similarity=0.232  Sum_probs=39.0

Q ss_pred             CCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChh
Q 048810          477 GFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFS  556 (582)
Q Consensus       477 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~  556 (582)
                      .+++|+.|++..|..+....   .......+|+|+.|.+.+|..+++-.-..+  ...+++|++|++++|..++.-.-..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~---l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i--~~~~~~L~~L~l~~c~~~~d~~l~~  315 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIG---LSALASRCPNLETLSLSNCSNLTDEGLVSI--AERCPSLRELDLSGCHGLTDSGLEA  315 (482)
T ss_pred             hcCCcCccchhhhhccCchh---HHHHHhhCCCcceEccCCCCccchhHHHHH--HHhcCcccEEeeecCccchHHHHHH
Confidence            44566666666554322211   001122255666666555555433221111  2345566666666665553321112


Q ss_pred             HHhhhhhcceeee
Q 048810          557 MAKNLLWLQKVGV  569 (582)
Q Consensus       557 ~~~~l~~L~~L~i  569 (582)
                      ...++++|+.|.+
T Consensus       316 ~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  316 LLKNCPNLRELKL  328 (482)
T ss_pred             HHHhCcchhhhhh
Confidence            2344554444433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.08  E-value=0.0018  Score=57.22  Aligned_cols=69  Identities=12%  Similarity=0.158  Sum_probs=42.0

Q ss_pred             CCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcch
Q 048810          504 CEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDEL  575 (582)
Q Consensus       504 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L  575 (582)
                      ...++.++.|.+.+|..+.+++-+.+.  +-+|+|+.|+|++||++++-.- ..+..+++|+.|.|.+.+.+
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhh
Confidence            344566666666666666666544343  3567777777777777666432 34556667777776665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.64  E-value=0.004  Score=34.10  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=14.2

Q ss_pred             CccEEEcCCCCCCCCChhhhc
Q 048810          258 GLKVLQFPGIGSSSLPSSLDR  278 (582)
Q Consensus       258 ~Lr~L~l~~~~~~~lp~~i~~  278 (582)
                      +|++|++++|.++.+|+++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467777777777777766554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.58  E-value=0.0047  Score=33.81  Aligned_cols=20  Identities=20%  Similarity=0.494  Sum_probs=10.8

Q ss_pred             CccEEEeeCCCCCccchhhc
Q 048810          303 KLEVLSFRDSDIEQLPLEIG  322 (582)
Q Consensus       303 ~L~~L~l~~~~l~~lp~~i~  322 (582)
                      +|++|++++|+++.+|.+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            35555555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.25  E-value=0.06  Score=45.23  Aligned_cols=78  Identities=15%  Similarity=0.313  Sum_probs=28.1

Q ss_pred             CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCcc
Q 048810          229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLE  305 (582)
Q Consensus       229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~  305 (582)
                      ++++|+.+.+..   ....+....|..+..|+.+.+.++ +..++ ..+..+.+|+.+.+.. .+..  ...+..+.+|+
T Consensus        10 ~~~~l~~i~~~~---~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen   10 NCSNLESITFPN---TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             T-TT--EEEETS---T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             CCCCCCEEEECC---CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            344445444432   233444444555555555555543 33333 2334444455555533 2222  22333444555


Q ss_pred             EEEeeC
Q 048810          306 VLSFRD  311 (582)
Q Consensus       306 ~L~l~~  311 (582)
                      .+.+..
T Consensus        85 ~i~~~~   90 (129)
T PF13306_consen   85 NIDIPS   90 (129)
T ss_dssp             EEEETT
T ss_pred             ccccCc
Confidence            555433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.12  E-value=0.073  Score=44.73  Aligned_cols=106  Identities=15%  Similarity=0.327  Sum_probs=60.1

Q ss_pred             cChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcC
Q 048810          248 VSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQ  323 (582)
Q Consensus       248 ~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~  323 (582)
                      ++...|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..  -..+..+.+|+.+.+.. .+..++.. +..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4566788888999999875 455554 35777778888888774 555  35577777888888865 55555554 445


Q ss_pred             CCCCCEEcccccccccccCcccccCCCcccEEEcCC
Q 048810          324 LRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN  359 (582)
Q Consensus       324 l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~  359 (582)
                      +++|+.+.+..  .+..++...+.+. +|+.+.+..
T Consensus        80 ~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   80 CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence            78888888765  2566666666666 777777654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.37  E-value=0.38  Score=55.46  Aligned_cols=145  Identities=15%  Similarity=0.218  Sum_probs=91.6

Q ss_pred             CCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHHhccccccccchhhhHH
Q 048810           11 VLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEIDGMEKNVY   90 (582)
Q Consensus        11 ~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~~~~~i~   90 (582)
                      +++.+|+.++|........ +   .+...+|.+.|+|.|+++..++..+...... -......+...       ....+.
T Consensus       185 ~f~~~e~~~ll~~~~~~~~-~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~  252 (903)
T PRK04841        185 AFDHQEAQQFFDQRLSSPI-E---AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGI-------NASHLS  252 (903)
T ss_pred             CCCHHHHHHHHHhccCCCC-C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCC-------CchhHH
Confidence            8999999999987664322 2   3457889999999999999998877643210 01111111100       113355


Q ss_pred             HHHHH-HHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHHHHHhcccccc-C-CC
Q 048810           91 LSIKL-SYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLD-G-DA  167 (582)
Q Consensus        91 ~~l~~-sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~-~-~~  167 (582)
                      ..+.- -|+.||.+ .+..+...|+++   .++.+ +...-     ...    .++    .+.+++|...+++.. . +.
T Consensus       253 ~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~-l~~~l-----~~~----~~~----~~~L~~l~~~~l~~~~~~~~  314 (903)
T PRK04841        253 DYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDA-LIVRV-----TGE----ENG----QMRLEELERQGLFIQRMDDS  314 (903)
T ss_pred             HHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHH-HHHHH-----cCC----CcH----HHHHHHHHHCCCeeEeecCC
Confidence            54433 48899998 999999999986   44422 22211     110    112    346778888888653 2 23


Q ss_pred             CccEEhhhHHHHHHHHHh
Q 048810          168 EDEVKMHDVIRVVAVSIA  185 (582)
Q Consensus       168 ~~~~~mhdl~~~l~~~~~  185 (582)
                      ...++.|++++++.....
T Consensus       315 ~~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        315 GEWFRYHPLFASFLRHRC  332 (903)
T ss_pred             CCEEehhHHHHHHHHHHH
Confidence            457899999999887654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.22  E-value=0.031  Score=28.29  Aligned_cols=16  Identities=25%  Similarity=0.600  Sum_probs=6.6

Q ss_pred             CccEEEeeCCCCCccc
Q 048810          303 KLEVLSFRDSDIEQLP  318 (582)
Q Consensus       303 ~L~~L~l~~~~l~~lp  318 (582)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555544

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.88  E-value=0.0069  Score=53.68  Aligned_cols=69  Identities=17%  Similarity=0.142  Sum_probs=38.4

Q ss_pred             CCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCccc
Q 048810          477 GFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKH  551 (582)
Q Consensus       477 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~  551 (582)
                      .+++++.|.+.+|..+..+-   ...-.+.+|+|+.|+|++|+++++-.   +.-+..+++|+.|.+.+.+.+..
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~---L~~l~~~~~~L~~L~lsgC~rIT~~G---L~~L~~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWC---LERLGGLAPSLQDLDLSGCPRITDGG---LACLLKLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             ccchhhhheeccccchhhHH---HHHhcccccchheeeccCCCeechhH---HHHHHHhhhhHHHHhcCchhhhc
Confidence            56666666666665433221   11123366777777777777655432   22245667777777776655443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.53  E-value=0.045  Score=27.71  Aligned_cols=16  Identities=31%  Similarity=0.505  Sum_probs=7.1

Q ss_pred             CccEEEcCCCCCCCCC
Q 048810          258 GLKVLQFPGIGSSSLP  273 (582)
Q Consensus       258 ~Lr~L~l~~~~~~~lp  273 (582)
                      +|+.|++++|.++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666655544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.67  E-value=0.0044  Score=55.97  Aligned_cols=81  Identities=14%  Similarity=0.076  Sum_probs=49.1

Q ss_pred             cCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcc
Q 048810          254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL  332 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l  332 (582)
                      ...+..++||++.+.+..+-..++-++.|..|+++.+++.. |.+++.+..++++++..|..+..|.+.++.+++++++.
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            34555666666666655555555555666666666666555 56666666666666666666666666666666666665


Q ss_pred             cc
Q 048810          333 SN  334 (582)
Q Consensus       333 ~~  334 (582)
                      .+
T Consensus       119 k~  120 (326)
T KOG0473|consen  119 KK  120 (326)
T ss_pred             cc
Confidence            55

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.54  E-value=0.23  Score=28.28  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=13.0

Q ss_pred             CCCccEEEeeCCCCCccchhh
Q 048810          301 LKKLEVLSFRDSDIEQLPLEI  321 (582)
Q Consensus       301 l~~L~~L~l~~~~l~~lp~~i  321 (582)
                      +++|++|++++|.++.+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            345666666666666666543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.54  E-value=0.23  Score=28.28  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=13.0

Q ss_pred             CCCccEEEeeCCCCCccchhh
Q 048810          301 LKKLEVLSFRDSDIEQLPLEI  321 (582)
Q Consensus       301 l~~L~~L~l~~~~l~~lp~~i  321 (582)
                      +++|++|++++|.++.+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            345666666666666666543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.84  E-value=0.0089  Score=54.06  Aligned_cols=91  Identities=16%  Similarity=0.112  Sum_probs=76.8

Q ss_pred             CCCC-hhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCccccc
Q 048810          270 SSLP-SSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVIS  347 (582)
Q Consensus       270 ~~lp-~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~  347 (582)
                      ..+| ..|........||++.+++.. -..++.++.|..|+++.+.+..+|.+.+.+..++++++.. +.....|.. ++
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s-~~  108 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS-QK  108 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc-cc
Confidence            3444 356677789999999998877 5778889999999999999999999999999999999888 678888876 78


Q ss_pred             CCCcccEEEcCCCcc
Q 048810          348 KLSRLEELYMGNSFK  362 (582)
Q Consensus       348 ~l~~L~~L~l~~~~~  362 (582)
                      ++++++.++..++.+
T Consensus       109 k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEF  123 (326)
T ss_pred             ccCCcchhhhccCcc
Confidence            999999998877653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.85  E-value=0.5  Score=26.85  Aligned_cols=20  Identities=30%  Similarity=0.436  Sum_probs=13.9

Q ss_pred             CCCccEEEcCCCCCCCCChh
Q 048810          256 MEGLKVLQFPGIGSSSLPSS  275 (582)
Q Consensus       256 l~~Lr~L~l~~~~~~~lp~~  275 (582)
                      +++|++|++++|.++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.85  E-value=0.5  Score=26.85  Aligned_cols=20  Identities=30%  Similarity=0.436  Sum_probs=13.9

Q ss_pred             CCCccEEEcCCCCCCCCChh
Q 048810          256 MEGLKVLQFPGIGSSSLPSS  275 (582)
Q Consensus       256 l~~Lr~L~l~~~~~~~lp~~  275 (582)
                      +++|++|++++|.++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777654

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=84.87  E-value=4.7  Score=38.76  Aligned_cols=71  Identities=14%  Similarity=0.228  Sum_probs=51.8

Q ss_pred             cceEEccCCCHHHHHHHHHHhhC--CCCCCcch-HHHHHHHHHHhCCcchHHHHHHHHHc------c-C--ChHHHHHHH
Q 048810            4 QKEIQIDVLSKEEALQLFKKIVG--DSMKTSAF-QSIAVEIVGRCGGLPVALITLAKALK------N-E--SLDTWKDVL   71 (582)
Q Consensus         4 ~~~~~l~~L~~~~~~~Lf~~~a~--~~~~~~~l-~~~~~~i~~~c~GlPLai~~~g~~L~------~-~--~~~~W~~~l   71 (582)
                      ...+++++++.+|..+++...+.  +......+ .+..+.|++.++|.|..|..++..+-      + +  +.+.++.++
T Consensus       184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~  263 (269)
T TIGR03015       184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVI  263 (269)
T ss_pred             eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence            34678999999999999987764  22212222 47899999999999999999988762      1 1  666666666


Q ss_pred             HHH
Q 048810           72 RQL   74 (582)
Q Consensus        72 ~~l   74 (582)
                      ..+
T Consensus       264 ~~~  266 (269)
T TIGR03015       264 AEI  266 (269)
T ss_pred             HHh
Confidence            554

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=84.39  E-value=0.41  Score=27.28  Aligned_cols=16  Identities=13%  Similarity=0.339  Sum_probs=9.3

Q ss_pred             hhcceeeeccCcchHH
Q 048810          562 LWLQKVGVEECDELKM  577 (582)
Q Consensus       562 ~~L~~L~i~~C~~L~~  577 (582)
                      ++|++|+|.+|+++++
T Consensus         2 ~~L~~L~l~~C~~itD   17 (26)
T smart00367        2 PNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCEeCCCCCCCcCH
Confidence            4566666666665553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	582
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-18
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	9e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  112 bits (280), Expect = 2e-26
 Identities = 29/199 (14%), Positives = 67/199 (33%), Gaps = 12/199 (6%)

Query: 1   MNSQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALK 60
             + + I++  L  +E     +            + +  + +    G P  L+   K+ +
Sbjct: 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCE 341

Query: 61  NESLDTWKDVLRQLRSSYAKEIDGMEKNVYLSI----KLSYDFLRSEEAKSLFLLCGLFS 116
            ++ +    +  +L S     ++ +    Y S+    +   + L S+E +S      +  
Sbjct: 342 PKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVL-SDEDRSALAFAVVMP 400

Query: 117 EGHAIPVPYLLRYGMGMGYFKEVYTVE-EARSRVHTLIGKLKSLCLLLDGD--AEDEVKM 173
            G  IPV              E   ++ E   R+  L  +      LL G        K+
Sbjct: 401 PGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKR----GALLSGKRMPVLTFKI 456

Query: 174 HDVIRVVAVSIAEDEHMFN 192
             +I +    + + + + N
Sbjct: 457 DHIIHMFLKHVVDAQTIAN 475

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 96.5 bits (239), Expect = 7e-21
 Identities = 87/515 (16%), Positives = 159/515 (30%), Gaps = 164/515 (31%)

Query: 164 DGDAEDEVKMHDVIRVVAVSIAEDEHMFNIPNVAD--------LEKKMEET--------- 206
           + D +D   + D+ + + +S  E +H+    +           L  K EE          
Sbjct: 32  NFDCKD---VQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 207 ----------IRKDPIAISLP-----------YRGDQVLPQRMRCPRLGLFLLHTIGLCS 245
                     I+ +    S+            Y  +QV  +     RL  +L     L  
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLE 146

Query: 246 IQVSDH-FFEGMEG-------LKVLQ-------FPG------IGSSSLPSSLDRLINLQT 284
           ++ + +   +G+ G       L V                  + + + P ++  L  LQ 
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV--LEMLQK 204

Query: 285 LCLDGCRLKDIAKVGQL-KKLEVLSFRDSDIEQLPLEI-GQLRRLQ--------LLDLSN 334
           L              Q+       S   S+I+     I  +LRRL         LL L N
Sbjct: 205 LLY------------QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 335 CWTLEVIAP-NVISKL---SRLEELYMGNSFKRWEKVEGGSNASLVELN-GLSKLTTLEI 389
               +     N+  K+   +R +++    S      +      SL   +  L+      +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI------SLDHHSMTLTPDEVKSL 306

Query: 390 HVRYAEILPQDL----VSVELQRYKMFIGEA----RGRW-FVKSETSRLMKLERLKSVSI 440
            ++Y +  PQDL    ++   +R  + I E+       W   K       KL  +   S+
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWK--HVNCDKLTTIIESSL 363

Query: 441 LLRNPG-MRMLLQR----TED----------LWLETLEGVP-SVVHEL--------DDGE 476
            +  P   R +  R                 +W + ++     VV++L           E
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 477 GFPRLKHLYVESCSEI-----LH--IVGSVRRVGC----EVFPLLETLYL---IG--LAN 520
               +  +Y+E   ++     LH  IV            ++ P     Y    IG  L N
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 521 LETICCSQLREDQSFS----NLRIIEVEHCNKLKH 551
           +E            F     + R +E     K++H
Sbjct: 484 IE-----HPERMTLFRMVFLDFRFLE----QKIRH 509

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 88.4 bits (218), Expect = 2e-18
 Identities = 52/329 (15%), Positives = 107/329 (32%), Gaps = 71/329 (21%)

Query: 10  DVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKD 69
             L+ +E   L  K +         Q +  E+       P  L  +A+++++  L TW D
Sbjct: 296 MTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDG-LATW-D 345

Query: 70  VLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRY 129
             + +       I          I+ S + L   E + +F    +F     IP   L   
Sbjct: 346 NWKHVNCDKLTTI----------IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 130 GMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVVAVSIAEDEH 189
              +        V         ++ KL    L+     E  + +  +          +  
Sbjct: 396 WFDV----IKSDVMV-------VVNKLHKYSLVEKQPKESTISIPSIYL--------ELK 436

Query: 190 MFNIPNVADLEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIG--LCSIQ 247
           +  + N   L + + +        I   +  D ++P  +       F  H IG  L +I+
Sbjct: 437 V-KLENEYALHRSIVDHYN-----IPKTFDSDDLIPPYLD----QYFYSH-IGHHLKNIE 485

Query: 248 VSDHF---------FEGMEG-LKVLQFPGIGSSSLPSSLDRLINLQTLCLDGC-----RL 292
             +           F  +E  ++        S S+ ++L +L   +    D        +
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545

Query: 293 KDIAKVGQLKKLE--VLSFRDSDIEQLPL 319
             I     L K+E  ++  + +D+ ++ L
Sbjct: 546 NAILDF--LPKIEENLICSKYTDLLRIAL 572

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 85.7 bits (212), Expect = 9e-18
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 28/186 (15%)

Query: 12  LSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVL 71
           L KE+ L++    V  +MK +     A  I+  C G P+ +  +   L++   + W+  L
Sbjct: 286 LGKEKGLEILSLFV--NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYL 342

Query: 72  RQLRSSYAKEIDGMEKNVYLSI----KLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLL 127
           +QL++   K I       Y ++     +S + LR +  K  +    +  +   +P   L 
Sbjct: 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDI-KDYYTDLSILQKDVKVPTKVLC 401

Query: 128 RYGM-----GMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIRVVAV 182
                         +E              +   KSL             +HD+      
Sbjct: 402 ILWDMETEEVEDILQE-------------FVN--KSLLFCDRNGKSFRYYLHDLQVDFLT 446

Query: 183 SIAEDE 188
                +
Sbjct: 447 EKNCSQ 452

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 15/127 (11%)

Query: 265 PGIGSSSLPSSLDRLINLQTLCLDGCRLKDI-AKVGQLKKLEVLSFRDSDIEQLPLEIGQ 323
             + S+        L+NLQ+L L+   ++ + A +  L+ L+ L  R+S +  L   I  
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227

Query: 324 LRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVEL-NGLS 382
           L +L+ LDL  C  L    P +    + L+ L + +             ++L+ L   + 
Sbjct: 228 LPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKD------------CSNLLTLPLDIH 274

Query: 383 KLTTLEI 389
           +LT LE 
Sbjct: 275 RLTQLEK 281

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 26/148 (17%)

Query: 256 MEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDI-AKVGQLKKLEVLSFRDSDI 314
             G   L+   +     P    RL +LQ + +D   L ++   + Q   LE L+   + +
Sbjct: 80  QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139

Query: 315 EQLPLEIGQLRRLQLLDLSNCWTLEVI--------APNVISKLSRLEELYMGNSFKRWEK 366
             LP  I  L RL+ L +  C  L  +        A      L  L+ L +  +      
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT------ 193

Query: 367 VEGGSNASLVEL----NGLSKLTTLEIH 390
                   +  L      L  L +L+I 
Sbjct: 194 -------GIRSLPASIANLQNLKSLKIR 214

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 13/101 (12%)

Query: 270 SSLPSSLDRLINLQTLCLDGC-----------RLKDIAKVGQLKKLEVLSFRDSDIEQLP 318
            +LP+S+  L  L+ L +  C                 +   L  L+ L    + I  LP
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199

Query: 319 LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
             I  L+ L+ L + N   L  +    I  L +LEEL +  
Sbjct: 200 ASIANLQNLKSLKIRNS-PLSAL-GPAIHHLPKLEELDLRG 238

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 78/335 (23%)

Query: 252 FFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKV---GQLKKLEVLS 308
           + + +   +                    N Q     G  LK  A +           L 
Sbjct: 28  YHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALE 87

Query: 309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVE 368
            R   + Q P +  +L  LQ + +     L  + P+ + + + LE L +  +        
Sbjct: 88  LRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMEL-PDTMQQFAGLETLTLARN-------- 137

Query: 369 GGSNASLVEL-NGLSKLTTLEI-HVRYA---EILPQDLVSVELQRYKMFIGEARGRWFVK 423
                 L  L   ++ L  L    +R       LP+ L                      
Sbjct: 138 -----PLRALPASIASLNRLRELSIRACPELTELPEPL----------------ASTDAS 176

Query: 424 SETSRLMKLERLKSVSILLRNPGMRML------LQRTEDLWLET--LEGVPSVVHELDDG 475
            E   L+ L+ L+     L   G+R L      LQ  + L +    L  +   +H L   
Sbjct: 177 GEHQGLVNLQSLR-----LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL--- 228

Query: 476 EGFPRLKHLYVESCSEILHI---VGSVRRVGCEVFPLLETLYLIGLANLETICCS--QLR 530
              P+L+ L +  C+ + +     G            L+ L L   +NL T+     +L 
Sbjct: 229 ---PKLEELDLRGCTALRNYPPIFGGRAP--------LKRLILKDCSNLLTLPLDIHRL- 276

Query: 531 EDQSFSNLRIIEVEHCNKLKHL-FSFSMAKNLLWL 564
                + L  +++  C  L  L    +       +
Sbjct: 277 -----TQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 271 SLPSSLDRLINLQTLCLDGC-RLKDI-AKVGQLKKLEVLSFRD-SDIEQLPLEIGQLRRL 327
           + P        L+ L L  C  L  +   + +L +LE L  R   ++ +LP  I QL   
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 328 QLLDLSNC 335
            ++ +   
Sbjct: 304 CIILVPPH 311

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 24/148 (16%), Positives = 53/148 (35%), Gaps = 15/148 (10%)

Query: 243 LCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLK 302
           L     ++     M  L  +    I  + L + ++   N++ L ++     +   +  L 
Sbjct: 30  LGQSSTANITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPISGLS 88

Query: 303 KLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSF 361
            LE L     D+    +  +  L  L LLD+S+    +      I+ L ++  + +    
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDL---- 143

Query: 362 KRWEKVEGGSNASLVELNGLSKLTTLEI 389
                     N ++ ++  L  L  L+ 
Sbjct: 144 --------SYNGAITDIMPLKTLPELKS 163

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 238 LHTIGLCSIQVSD-HFFEGMEGLKVLQFPGIG-SSSLPSSLDRLINLQTLCLDGCRLKD- 294
           +  + + +I  ++ +   G+  L+ L+  G   +S    +L  L +L  L +      D 
Sbjct: 68  IKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 295 -IAKVGQLKKLEVLSFRD----SDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKL 349
            + K+  L K+  +        +DI  L      L  L+ L++     +       I   
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPL----KTLPELKSLNIQFD-GVHDYRG--IEDF 180

Query: 350 SRLEELYMGN 359
            +L +LY  +
Sbjct: 181 PKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 279 LINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTL 338
                   L      +I +  Q+  L  ++  + ++  L   I     ++ L ++N    
Sbjct: 22  FKAYLNGLLGQSSTANITE-AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HA 78

Query: 339 EVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
               P  IS LS LE L +             ++  +  L+GL+ LT L+I 
Sbjct: 79  TNYNP--ISGLSNLERLRIMGK--------DVTSDKIPNLSGLTSLTLLDIS 120

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 6/84 (7%)

Query: 238 LHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL---PSSLDRLINLQTLCLDGCRLKD 294
           L  + +      D     +  L  +    +  +        L  L  L++L +    + D
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD 173

Query: 295 IAKVGQLKKLEVLSFRD---SDIE 315
              +    KL  L          +
Sbjct: 174 YRGIEDFPKLNQLYAFSQTIGGKK 197

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 17/147 (11%)

Query: 253 FEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDS 312
              ++ +  LQ   +G  S+   ++ L NL  +     +L DI  +  L KL  +   ++
Sbjct: 42  QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 100

Query: 313 DIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGS 371
            I  +   +  L  L  L L N   +  I P  +  L+ L  L +  N+           
Sbjct: 101 QIADIT-PLANLTNLTGLTLFNNQ-ITDIDP--LKNLTNLNRLELSSNTIS--------- 147

Query: 372 NASLVELNGLSKLTTLEIHVRYAEILP 398
              +  L+GL+ L  L    +  ++ P
Sbjct: 148 --DISALSGLTSLQQLSFGNQVTDLKP 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.8 bits (156), Expect = 6e-11
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL 332
             S   L  + TL  D   +K I  V  L  L  ++F ++ +  +   +  L +L  + +
Sbjct: 39  TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILM 97

Query: 333 SNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLTTLEI 389
           +N   +  I P  ++ L+ L  L +  N               +  L  L+ L  LE+
Sbjct: 98  NNN-QIADITP--LANLTNLTGLTLFNNQIT-----------DIDPLKNLTNLNRLEL 141

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL 332
              L  L  L+ L +   ++ DI+ + +L  LE L   ++ I  +   +G L  L  L L
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSL 228

Query: 333 SNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEG---------GSN--ASLVELNG 380
           +     ++     ++ L+ L +L +  N       + G         G+N  +++  L G
Sbjct: 229 NGN---QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 285

Query: 381 LSKLTTLEIH 390
           L+ LT LE++
Sbjct: 286 LTALTNLELN 295

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 20/156 (12%)

Query: 238 LHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL--PSSLDRLINLQTLCLDGCRLKDI 295
           L ++   + Q+SD     +  L  L    +  + L    +L  L NL  L L   ++ ++
Sbjct: 201 LESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL 258

Query: 296 AKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEEL 355
           A +  L KL  L    + I  +   +  L  L  L+L+    LE I+P  IS L  L  L
Sbjct: 259 APLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQ-LEDISP--ISNLKNLTYL 314

Query: 356 YM-GNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
            +  N+              +  ++ L+KL  L  +
Sbjct: 315 TLYFNNIS-----------DISPVSSLTKLQRLFFY 339

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 9e-10
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 17/118 (14%)

Query: 274 SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS 333
             L  L NL  L L    + DI+ +  L  L+ LSF +   +  PL    L  L+ LD+S
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL--ANLTTLERLDIS 185

Query: 334 NCWTLEVIAPNVISKLSRLEELYMG-NSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
           +    +V   +V++KL+ LE L    N               +  L  L+ L  L ++
Sbjct: 186 SN---KVSDISVLAKLTNLESLIATNNQIS-----------DITPLGILTNLDELSLN 229

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 16/118 (13%)

Query: 274 SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS 333
            +   L       L    + D      L ++  L      I+ +   +  L  L  ++ S
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFS 76

Query: 334 NCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
           N   L  I P  +  L++L ++ M  N               +  L  L+ LT L + 
Sbjct: 77  NN-QLTDITP--LKNLTKLVDILMNNNQIA-----------DITPLANLTNLTGLTLF 120

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 274 SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS 333
           S +  L NL  L L    + DI+ V  L KL+ L F ++ +  +   +  L  +  L   
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAG 361

Query: 334 NCWTLEVIAPNVISKLSRLEELYMGN 359
           +    ++     ++ L+R+ +L + +
Sbjct: 362 HN---QISDLTPLANLTRITQLGLND 384

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL 332
            SSL  L N+  L     ++ D+  +  L ++  L   D      P+       + + + 
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKAN--VSIPNT 403

Query: 333 SNCWTLEVIAPNVISKLSRLEELY 356
               T  +IAP  IS      E  
Sbjct: 404 VKNVTGALIAPATISDGGSYTEPD 427

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 7e-12
 Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 10/143 (6%)

Query: 253 FEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDIAK--VGQLKKLEVLS 308
           F  +  L+VL      IG          L N+  + L   +   + +     +  L+ L 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 309 FRD---SDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRW 364
            R     +++  P     LR L +LDLSN   +  I  +++  L +LE L +  N+  R 
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 365 EKVEGGSNASLVELNGLSKLTTL 387
            K        +  L GLS L  L
Sbjct: 520 WK-HANPGGPIYFLKGLSHLHIL 541

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 23/161 (14%)

Query: 247 QVSDHFFEGMEGLKVL-----QFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAK--VG 299
           Q++ + F  +  L+ L         + SS  PS    L NL  L L    + +I    + 
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSS--PSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 300 QLKKLEVLSFRDSDIEQL---------PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLS 350
            L+KLE+L  + +++ +L            +  L  L +L+L +    + I   V   L 
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLF 560

Query: 351 RLEELYM-GNSFKRWEKVEGGSNASLVELNGLS--KLTTLE 388
            L+ + +  N+          +  SL  LN L    +T++E
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLN-LQKNLITSVE 600

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 8e-08
 Identities = 58/325 (17%), Positives = 106/325 (32%), Gaps = 52/325 (16%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLKDIAK--VGQLKKLEVLSFRDSDIEQLPLE-IGQLR 325
                ++  R   L +L +    +  +      +L  L+VL+ + +++ QL  +      
Sbjct: 38  RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 326 RLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG-NSFKRWEKVEGGSNASLVELNGLS-- 382
            L  L L +  +++ I  N   K   L  L +  N     +        +L EL  LS  
Sbjct: 98  NLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL-LSNN 155

Query: 383 KLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERL-----KS 437
           K+  L+            L  +EL   +  I E     F       + +L  L     + 
Sbjct: 156 KIQALKSEELDIFANSS-LKKLELSSNQ--IKEFSPGCF-----HAIGRLFGLFLNNVQL 207

Query: 438 VSILLRNPGMRMLLQRTEDLWLE--TLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHI 495
              L     + +      +L L    L    +       G  +  L  L +         
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSN---TTFLGLKWTNLTMLDLSYN------ 258

Query: 496 VGSVRRVGCEVF---PLLETLYL-------------IGLANLETICCSQ--LREDQSFSN 537
             ++  VG + F   P LE  +L              GL N+  +   +   ++  S ++
Sbjct: 259 --NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316

Query: 538 LRIIEVEHCNKLKHLFSFSMAKNLL 562
           L  I+      LK L   +M  N +
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDI 341

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 16/125 (12%)

Query: 247 QVSDHFFEGMEGLKVL-----QFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQ- 300
           ++ D  F+ ++ L+ L       PGI      +    LINL+ L L            + 
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 301 -----LKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEE 354
                   L +L+   + I ++  +    L  L++LDL      + +       L  + E
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 355 LYMGN 359
           +Y+  
Sbjct: 435 IYLSY 439

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 14/153 (9%)

Query: 243 LCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVG--- 299
           L           G   LK L     G  ++ S+   L  L+ L      LK +++     
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 300 QLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM- 357
            L+ L  L    +        I   L  L++L ++     E   P++ ++L  L  L + 
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 358 GNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
               ++   +   +       N LS L  L + 
Sbjct: 184 QCQLEQ---LSPTA------FNSLSSLQVLNMS 207

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 43/166 (25%), Positives = 63/166 (37%), Gaps = 15/166 (9%)

Query: 253 FEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDIAKV--GQLKKLEVLS 308
           F G+E L+ L F    +   S  S    L NL  L +     +         L  LEVL 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156

Query: 309 FRD-SDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK 366
               S  E    +I  +LR L  LDLS C  LE ++P   + LS L+ L M ++   +  
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN--NFFS 213

Query: 367 VEGGSNASLVELNGLS----KLTTLEIHVRYAEILPQDLVSVELQR 408
           ++      L  L  L      + T +         P  L  + L +
Sbjct: 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH--FPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 12/122 (9%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKVGQ----LKKLEVLSFRDSDIEQLPLEIGQLRRLQ 328
               D+L  L  L L    L       Q       L+ L    + +  +      L +L+
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104

Query: 329 LLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE 388
            LD  +    ++   +V   L  L  L + ++         G        NGLS L  L+
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNGI------FNGLSSLEVLK 156

Query: 389 IH 390
           + 
Sbjct: 157 MA 158

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 17/136 (12%)

Query: 253 FEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDS 312
            E +E +  L   G   +S+   ++ L NL+ L L+G ++ DI+ +  L KL  L    +
Sbjct: 40  QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN 98

Query: 313 DIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSN 372
            I  +   +  L  L+ L L+    +  I+P  ++ L+++  L +G             N
Sbjct: 99  KITDIS-ALQNLTNLRELYLNEDN-ISDISP--LANLTKMYSLNLGA------------N 142

Query: 373 ASLVELNGLSKLTTLE 388
            +L +L+ LS +T L 
Sbjct: 143 HNLSDLSPLSNMTGLN 158

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 5e-11
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 17/122 (13%)

Query: 271 SLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLL 330
           +  S+L  L NL+ L L+   + DI+ +  L K+  L+   +        +  +  L  L
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160

Query: 331 DLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSN--ASLVELNGLSKLTTLE 388
            ++    ++ + P  I+ L+ L  L +              N    +  L  L+ L    
Sbjct: 161 TVTES-KVKDVTP--IANLTDLYSLSLNY------------NQIEDISPLASLTSLHYFT 205

Query: 389 IH 390
            +
Sbjct: 206 AY 207

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.9 bits (154), Expect = 8e-11
 Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 16/119 (13%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL 332
             + + L ++  L + G ++  I  +  L  LE L+   + I  +   +  L +L  L +
Sbjct: 37  VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYI 95

Query: 333 SNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
                +  I+   +  L+ L ELY+  ++              +  L  L+K+ +L + 
Sbjct: 96  GTN-KITDISA--LQNLTNLRELYLNEDNIS-----------DISPLANLTKMYSLNLG 140

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 30/157 (19%), Positives = 68/157 (43%), Gaps = 18/157 (11%)

Query: 234 GLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL--PSSLDRLINLQTLCLDGCR 291
            L  L+++ L   Q+ D     +  L  L +     + +   + +  +  L +L +   +
Sbjct: 175 NLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK 232

Query: 292 LKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSR 351
           + D++ +  L +L  L    + I  +   +  L +L++L++ +   +  I+   ++ LS+
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN-QISDISV--LNNLSQ 288

Query: 352 LEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLTTL 387
           L  L++  N            N  +  + GL+ LTTL
Sbjct: 289 LNSLFLNNNQL---------GNEDMEVIGGLTNLTTL 316

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 19/140 (13%)

Query: 253 FEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDS 312
              M GL  L         +   +  L +L +L L+  +++DI+ +  L  L   +   +
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN 209

Query: 313 DIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSN 372
            I  +   +  + RL  L + N   +  ++P  ++ LS+L  L +G             N
Sbjct: 210 QITDIT-PVANMTRLNSLKIGNN-KITDLSP--LANLSQLTWLEIGT------------N 253

Query: 373 A--SLVELNGLSKLTTLEIH 390
               +  +  L+KL  L + 
Sbjct: 254 QISDINAVKDLTKLKMLNVG 273

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 17/134 (12%)

Query: 258 GLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQL 317
           G   L       + +      L       L    + D+    +L+ +  L      +  +
Sbjct: 1   GAATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI 59

Query: 318 PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLV 376
              I  L  L+ L+L+    +  I+P  +S L +L  LY+  N               + 
Sbjct: 60  Q-GIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKIT-----------DIS 104

Query: 377 ELNGLSKLTTLEIH 390
            L  L+ L  L ++
Sbjct: 105 ALQNLTNLRELYLN 118

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLD 331
            +++  L  L+ L +   ++ DI+ +  L +L  L   ++ +    +E IG L  L  L 
Sbjct: 258 INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 332 LSNCWTLEVIAPNVISKLSRLEELYMGN 359
           LS    +  I P  ++ LS+++     N
Sbjct: 318 LSQN-HITDIRP--LASLSKMDSADFAN 342

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.7 bits (157), Expect = 3e-11
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 18/119 (15%)

Query: 274 SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS 333
              D         L    + D     +L  ++ +   +SDI+ +   I  L  +  L L+
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLN 73

Query: 334 NCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSN--ASLVELNGLSKLTTLEIH 390
               L  I P  ++ L  L  L++              N    L  L  L KL +L + 
Sbjct: 74  GNK-LTDIKP--LTNLKNLGWLFLDE------------NKIKDLSSLKDLKKLKSLSLE 117

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 3e-09
 Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 19/138 (13%)

Query: 253 FEGMEGLKVLQFPGIGSSSLP--SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFR 310
            +G++ L  +    +  + L     L  L NL  L LD  ++KD++ +  LKKL+ LS  
Sbjct: 58  VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 117

Query: 311 DSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGG 370
            + I  +   +  L +L+ L L N   +  I    +S+L++L+ L +             
Sbjct: 118 HNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSL------------- 160

Query: 371 SNASLVELNGLSKLTTLE 388
            +  + ++  L+ LT L+
Sbjct: 161 EDNQISDIVPLAGLTKLQ 178

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.4 bits (138), Expect = 8e-09
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 238 LHTIGLCSIQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIA 296
           L  + L   ++ D    + ++ LK L     G S + + L  L  L++L L   ++ DI 
Sbjct: 89  LGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDIT 147

Query: 297 KVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELY 356
            + +L KL+ LS  D+ I  +   +  L +LQ L LS    +  +    ++ L  L+ L 
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNH-ISDLRA--LAGLKNLDVLE 203

Query: 357 MGNSFKRWEKVEGGSNASLVELNGLSKL 384
           + +     + +   SN  LV  N +   
Sbjct: 204 LFSQECLNKPINHQSN--LVVPNTVKNT 229

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 4/115 (3%)

Query: 247 QVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKL 304
            + D        ++ L      I + +          L+ L L    + D+       KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 305 EVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
           + L    + +  +  E      +  + L N   L +I    +     LE   +  
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 34/143 (23%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLKDIAK--VGQLKKLEVLSFRDSDIEQLPLEIGQLRR 326
             +L S      N++ L L G  L  I+   +    KLE+L+   + + +   ++  L  
Sbjct: 23  KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLST 81

Query: 327 LQLLDLSNCWTLEVIAPN---VISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELN--- 379
           L+ LDL+N         N    +     +E L+   N+     +V          +    
Sbjct: 82  LRTLDLNN---------NYVQELLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLAN 129

Query: 380 ------------GLSKLTTLEIH 390
                         S++  L++ 
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLK 152

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 12/121 (9%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL 332
            + L     L+ L L    L +   +  L  L  L   ++ +++L         ++ L  
Sbjct: 51  AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIETLHA 106

Query: 333 SNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLS--KLTTLEI 389
           +N   +  ++ +        + +Y+  N       ++ G  + +  L+ L   ++ T+  
Sbjct: 107 ANNN-ISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLD-LKLNEIDTVNF 161

Query: 390 H 390
            
Sbjct: 162 A 162

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 16/98 (16%)

Query: 292 LKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQ-LRRLQLLDLSNCWTLEVIAPNVISKLS 350
           + +I       + ++    DS ++Q    + Q    ++ LDLS    L  I+   ++  +
Sbjct: 2   IHEI--KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFT 58

Query: 351 RLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLTTL 387
           +LE L +  N                ++L  LS L TL
Sbjct: 59  KLELLNLSSNVLY-----------ETLDLESLSTLRTL 85

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 19/123 (15%)

Query: 271 SLPSSLDRLINLQTLCLDGCRLKDI-AKVGQ-LKKLEVLSFRDSDIEQLPLE-IGQLRRL 327
           ++          +   +    LK   A + Q    ++ L    + + Q+    +    +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 328 QLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTL 387
           +LL+LS+   L       +  LS L  L + N            N  + EL     + TL
Sbjct: 61  ELLNLSSN-VLYETLD--LESLSTLRTLDLNN------------N-YVQELLVGPSIETL 104

Query: 388 EIH 390
              
Sbjct: 105 HAA 107

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 19/156 (12%)

Query: 245 SIQVSDHFFEGMEGLKVL-----QFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKV- 298
            +++     E +E L+ L                  L  L +LQ+L L       +    
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCC--NLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 299 -GQLKKLEVLSFRDSDIEQLPLE--IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEEL 355
             +  +LE+L    + ++    +     L  L++L+LS+   L++ +  +   L  L+ L
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHL 454

Query: 356 YM-GNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
            + GN F +    +  S      L  L +L  L + 
Sbjct: 455 NLQGNHFPKGNIQKTNS------LQTLGRLEILVLS 484

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLKDI-AKVGQLKKLEVLSFRDSDIEQLP-LEIGQLRR 326
            +   ++      LQ L L    L ++ + +  L  L+ L    +  E L  +       
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326

Query: 327 LQLLDLSNCWTLEVIAPNVISKLSRLEELYMG-NSFKRWEKVEGGSNASLVELNGLSKLT 385
           L  L +        +    +  L  L EL +  +  +        S+   ++L  LS L 
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-------TSDCCNLQLRNLSHLQ 379

Query: 386 TL 387
           +L
Sbjct: 380 SL 381

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 15/149 (10%)

Query: 253 FEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKDIAK--VGQLKKLEVLSF 309
           F  +  L  L         +   +      L TL L    L  +A+  +   K L+ L F
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 310 RDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKV 367
             + I  +  + +   + L+ L L +   +  I         +L+ L    N+     K 
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSK- 170

Query: 368 EGGSNASLVELNGLSKLTTLEIHVRYAEI 396
                    +++ L + T L +++   +I
Sbjct: 171 --------EDMSSLQQATNLSLNLNGNDI 191

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 17/152 (11%)

Query: 247 QVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQ---- 300
            +          L  L   G           L+ L NL+ L L    ++           
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 301 LKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-G 358
           L  L+ L+   ++   L  E   +  +L+LLDL+        A +    L  L+ L +  
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 359 NSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
           +           S+  L   +GL  L  L + 
Sbjct: 435 SLLD-------ISSEQL--FDGLPALQHLNLQ 457

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 14/126 (11%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLKDIAKV--GQLKKLEVLSFRDSDIEQLPLEI-GQLR 325
            +   ++  RLINL  L L  C++  I +       +L+ L    + +  +        +
Sbjct: 46  PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105

Query: 326 RLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKL 384
            L+ L       +  I    +     LE LY+  N           S+  L +     KL
Sbjct: 106 ALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHI---------SSIKLPKGFPTEKL 155

Query: 385 TTLEIH 390
             L+  
Sbjct: 156 KVLDFQ 161

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 248 VSDHFFEGMEGLKVL-----QFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKV--GQ 300
            S+  F+G+  L+ L      FP   +    +SL  L  L+ L L  C L  I +     
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKG-NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 301 LKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-G 358
           LK +  +    + +    +E    L+ +  L+L++   + +I P+++  LS+   + +  
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASN-HISIILPSLLPILSQQRTINLRQ 556

Query: 359 NSF 361
           N  
Sbjct: 557 NPL 559

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 16/126 (12%)

Query: 274 SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS 333
                L N     L    + D+    +L  ++  +  +S+I+ L   +     L+ L LS
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLS 71

Query: 334 NCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELN----------GLSK 383
           +   +  ++P  +  L++LEEL +  +  R + + G  +A L  L            L  
Sbjct: 72  HN-QISDLSP--LKDLTKLEELSVNRN--RLKNLNGIPSACLSRLFLDNNELRDTDSLIH 126

Query: 384 LTTLEI 389
           L  LEI
Sbjct: 127 LKNLEI 132

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 19/137 (13%)

Query: 253 FEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDS 312
            + + G++          SL + +    NL+ L L   ++ D++ +  L KLE LS   +
Sbjct: 37  QKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95

Query: 313 DIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSN 372
            ++   L       L  L L N   L       +  L  LE L +              N
Sbjct: 96  RLKN--LNGIPSACLSRLFLDNN-ELRDTDS--LIHLKNLEILSI-------------RN 137

Query: 373 ASLVELNGLSKLTTLEI 389
             L  +  L  L+ LE+
Sbjct: 138 NKLKSIVMLGFLSKLEV 154

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 4/120 (3%)

Query: 238 LHTIGLCSIQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIA 296
           L  + L + ++ D      ++ L++L        S+   L  L  L+ L L G  + +  
Sbjct: 108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNTG 166

Query: 297 KVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELY 356
            + +LKK+  +          P++      L + +         I+P  IS      +  
Sbjct: 167 GLTRLKKVNWIDLTGQKCVNEPVKY--QPELYITNTVKDPDGRWISPYYISNGGSYVDGC 224

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 14/147 (9%)

Query: 248 VSDHFFEGMEGLKVLQFPGIGS-SSLPS-SLDRLINLQTLCLDGCRLKDIAKVGQLKKLE 305
           +  + F  +  L  L    +     +   + + L NL+ L L  C +KD+  +  L  LE
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLE 221

Query: 306 VLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKR 363
            L    +   ++       L  L+ L + N   + +I  N    L+ L EL +  N+   
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNL-- 278

Query: 364 WEKVEGGSNASLVELNGLSKLTTLEIH 390
              +             L  L  L +H
Sbjct: 279 -SSLPHDL------FTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 36/143 (25%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 253 FEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKDIAKV--GQLKKLEVLSF 309
           F  +  L+VLQ        +   + + L +L TL L    L  I       L KL  L  
Sbjct: 95  FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154

Query: 310 RDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKV 367
           R++ IE +P     ++  L  LDL     LE I+      L  L+ L +   + K     
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK----- 209

Query: 368 EGGSNASLVELNGLSKLTTLEIH 390
                  +  L  L  L  LE+ 
Sbjct: 210 ------DMPNLTPLVGLEELEMS 226

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 52/271 (19%), Positives = 98/271 (36%), Gaps = 39/271 (14%)

Query: 247 QVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKDI-AKV-GQLKK 303
            +S+   +    L+ L     G +++   S   L +L+ L L    L ++ +     L  
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125

Query: 304 LEVLSFRDSDIEQLPLEI--GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNS 360
           L  L+   +  + L        L +LQ+L + N  T   I     + L+ LEEL +  + 
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 361 FKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILP----QDLVSVE-LQRYKMFIGE 415
            +     E  S      L  +  ++ L +H++   +L         SVE L+     +  
Sbjct: 186 LQ---SYEPKS------LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 416 ARGRWFVKSETSRLMKLERLKSVSI----LLRNPGMRMLLQRTEDLWLE--TLEGVP-SV 468
                    ET+ L+K    ++V I    L +   +   +    +L      L+ VP  +
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI 296

Query: 469 VHELDDGEGFPRLKHLYVE------SCSEIL 493
              L        L+ +++       SC  I 
Sbjct: 297 FDRL------TSLQKIWLHTNPWDCSCPRID 321

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 268 GSSSLPSSLDRLINLQTLCLDGCRLK-DIAKVGQLKKLEVLSFRDSDIE-QLP--LEIGQ 323
           G S++ SSL  L  L++L L    +   ++       L  L    + +   +     +G 
Sbjct: 65  GFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS 124

Query: 324 LRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLS 382
              L+ L++S+         +   KL+ LE L +  NS        G +    V  +G  
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI------SGANVVGWVLSDGCG 178

Query: 383 KLTTL 387
           +L  L
Sbjct: 179 ELKHL 183

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 7e-08
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRL-----KDIAKVGQLKKLEVLSFRDSDIE-QLPLEIG 322
              +P     L +LQ L L   +        ++  G    L  L    +     +P   G
Sbjct: 260 VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS--GACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 323 QLRRLQLLDLSNCWTLE-VIAPNVISKLSRLEELYMGN 359
               L+ L LS+       +  + + K+  L+ L +  
Sbjct: 316 SCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSF 352

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 271 SLPSSLDRLINLQTLCLDGCRLKDI--AKVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRL 327
            +PS L    NL  + L   RL       +G+L+ L +L   ++     +P E+G  R L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540

Query: 328 QLLDLSN 334
             LDL+ 
Sbjct: 541 IWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 245 SIQVSDHFFEGMEGLKVLQFPGIG-SSSLPSSLDRLINLQTLCLDGCRLK-DIAKVGQLK 302
           +  V     +G   LK L   G   S  +  S  R +NL+ L +        I  +G   
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPFLGDCS 223

Query: 303 KLEVLSFRDSDIE-QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
            L+ L    + +       I     L+LL++S+        P     L  L+ L +  
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPP--LPLKSLQYLSLAE 278

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 6e-05
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 28/119 (23%)

Query: 269 SSSLPSSL--DRLINLQTLCLDGCRLK-DI-AKVGQLKKLEVLSFRDSDIE-QLPLEIGQ 323
           S  +  +L  +    LQ L L        I   +    +L  L    + +   +P  +G 
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 324 LRRLQLLDLS-------------NCWTLEVIA----------PNVISKLSRLEELYMGN 359
           L +L+ L L                 TLE +           P+ +S  + L  + + N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 280 INLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCW-TL 338
           I+L +  L+       + +  L  LE L   +S I            L  LDLS    + 
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114

Query: 339 EVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSN-ASLVELN 379
            V     +   S L+ L +  N+     KV GG    SL  L+
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLKDI---AKVGQLKKLEVLSFRDSDIE-QLPLEIGQL 324
             ++P        L++L L             + +++ L+VL    ++   +LP  +  L
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366

Query: 325 R-RLQLLDLSNCWTLEVIAPNVISK--LSRLEELYMGN 359
              L  LDLS+           + +   + L+ELY+ N
Sbjct: 367 SASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQN 403

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 8/92 (8%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLK--DIAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLR 325
                  L+RL       +                  +  L    + +   +P EIG + 
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656

Query: 326 RLQLLDLS-NCWTLE-VIAPNVISKLSRLEEL 355
            L +L+L  N   +   I P+ +  L  L  L
Sbjct: 657 YLFILNLGHN--DISGSI-PDEVGDLRGLNIL 685

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 13/128 (10%)

Query: 267 IGSSSLPSSLDRLINLQTLCLDGCRLKDI---AKVGQLKKLEVLSFRDSDIEQLPLEIGQ 323
                  +       +Q + +    LK       + ++KKL +L    + +E      G 
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351

Query: 324 LRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLS 382
             +L  L+L+    +  I  N      ++E L    N  K           ++ +   +S
Sbjct: 352 EIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK--------YIPNIFDAKSVS 402

Query: 383 KLTTLEIH 390
            ++ ++  
Sbjct: 403 VMSAIDFS 410

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 18/134 (13%), Positives = 42/134 (31%), Gaps = 16/134 (11%)

Query: 270 SSLPSSL-DRLINLQTLCLDGCRLKDIAK---VGQLKKLEVL--------SFRDSDIEQL 317
           + +P++       ++ L     +LK I        +  +  +        S    + + L
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 318 PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLV 376
                +   +  ++LSN   +      + S  S L  + + GN      K          
Sbjct: 426 DPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD--ENE 482

Query: 377 ELNGLSKLTTLEIH 390
                  LT++++ 
Sbjct: 483 NFKNTYLLTSIDLR 496

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 10/106 (9%)

Query: 263 QFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDI---AKVGQLKKLEVLSFRDSDIEQLPL 319
           + P         +      L ++ L   +L  +    +   L  L  +    +   + P 
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530

Query: 320 EIGQLRRLQLLDLSNCWTL------EVIAPNVISKLSRLEELYMGN 359
           +      L+   + N              P  I+    L +L +G+
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGS 575

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 38/151 (25%)

Query: 270 SSLPSSLDRLINLQTLCLDGCRLKDI---------------------AKVGQLKKLEVLS 308
           + +  ++ RL  L+   +                              K   LK L  + 
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 309 FRD-SDIEQLPLEIGQLRRLQLLDLSNC-------WTLEVIAPNVISKLSRLEELYM-GN 359
             +  ++ +LP  +  L  +QL++++            +  A        +++ +Y+  N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 360 SFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
           + K           S   L  + KL  LE  
Sbjct: 316 NLK-----TFPVETS---LQKMKKLGMLECL 338

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 12/107 (11%)

Query: 264 FPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAK--VGQLKKLEVL--------SFRDSD 313
             G     L  +  + IN+ ++ L   ++    K        L  +            + 
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 314 IEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNV-ISKLSRLEELYMGN 359
           ++           L  +DL     L  ++ +   + L  L  + +  
Sbjct: 477 LKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSY 522

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 13/128 (10%), Positives = 35/128 (27%), Gaps = 21/128 (16%)

Query: 270 SSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKK-------LEVLSFRDSDIEQLPLEIG 322
               + +D         L    +    +   +KK          +    ++I  +   + 
Sbjct: 144 HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVM 203

Query: 323 QLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLS 382
           +L +L+   + N             +    E      +               ++ + L 
Sbjct: 204 RLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTE-------------DLKWDNLK 249

Query: 383 KLTTLEIH 390
            LT +E++
Sbjct: 250 DLTDVEVY 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 57/362 (15%), Positives = 109/362 (30%), Gaps = 53/362 (14%)

Query: 247 QVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKDIAKV--GQLKK 303
            +          L+VL       +++   +   L +L+ L L    L  ++    G L  
Sbjct: 40  YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

Query: 304 LEVLSFRDSDIEQLPL--EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNS 360
           L+ L+   +  + L +      L  LQ L + N  T   I     + L+ L EL +   S
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 361 FKRWEKVEGGSNASLVELN---------------GLSKLTTLEIHVRYAEILPQDLVSVE 405
            + ++     S   +  L                 LS +  LE+            + V+
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 406 LQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRML-LQRTEDLWLETLEG 464
                M     RG        + L+KL R       +      +  L        + +  
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279

Query: 465 VPSV--------------VHELDDG--EGFPRLKHLYVESCSEILHIVGSVRRVGCEVFP 508
           +  V              +            ++K + VE+          V  V C    
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS--------KVFLVPCSFSQ 331

Query: 509 LLETLYLIGLAN--LETICCSQLREDQSFSNLRIIEVEHCNKLKHL----FSFSMAKNLL 562
            L++L  + L+   +            ++ +L+ + +   N L+ +          KNL 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ-NHLRSMQKTGEILLTLKNLT 390

Query: 563 WL 564
            L
Sbjct: 391 SL 392

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 247 QVSDHFFEGMEGLKVLQFPG--IGSSSLPSS--LDRLINLQTLCLDGCRLKDIAKVG--- 299
            V   F + ++ L+ L      +    L +S       +LQTL L    L+ + K G   
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 300 -QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG 358
             LK L  L    +    +P       +++ L+LS+   + V+   +      LE L + 
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCI---PQTLEVLDVS 439

Query: 359 N 359
           N
Sbjct: 440 N 440

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 17/147 (11%)

Query: 245 SIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKL 304
           S+Q +      ++ L  L         +P S      ++ L L    ++ +      + L
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT-CIPQTL 433

Query: 305 EVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKR 363
           EVL   +++++   L    L RLQ L +S    L+ +    +     L  + +  N  K 
Sbjct: 434 EVLDVSNNNLDSFSLF---LPRLQELYISRNK-LKTLPDASL--FPVLLVMKISRNQLKS 487

Query: 364 WEKVEGGSNASLVELNGLSKLTTLEIH 390
              V  G        + L+ L  + +H
Sbjct: 488 ---VPDGI------FDRLTSLQKIWLH 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 270 SSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEI-GQLRRLQ 328
            S    L     LQ L +   +LK +        L V+    + ++ +P  I  +L  LQ
Sbjct: 444 DSFSLFLP---RLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 329 LLDLSN 334
            + L  
Sbjct: 501 KIWLHT 506

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 16/126 (12%)

Query: 250 DHFFEGMEGLKVL--------QFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDI---AKV 298
              F     +  +          P         +      L T+ L   +L  +    + 
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749

Query: 299 GQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEV-----IAPNVISKLSRLE 353
             L  L  +    +     P +     +L+   + +    E        P  I+    L 
Sbjct: 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 354 ELYMGN 359
           +L +G+
Sbjct: 810 QLQIGS 815

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 24/135 (17%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLKDI--AKVGQLKKLEVLSFRD----------SDIEQ 316
             +   S   L +L  + L  C         +  L +L+ L+             +D  +
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 317 LPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASL 375
           L  +     ++Q+  +      E  A   + K+ +L  L    N  +            L
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-----------HL 588

Query: 376 VELNGLSKLTTLEIH 390
                  KLT L++ 
Sbjct: 589 EAFGTNVKLTDLKLD 603

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 14/132 (10%)

Query: 270 SSLPSSL-DRLINLQTLCLDGCRLKDI---AKVGQLKKLEVLSFRDSDIEQLPLEIG--- 322
             +P         ++ L     +LK I        +  +  + F  + I      I    
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 323 ---QLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVEL 378
              +      + LS    ++     + +  S +  + +  N      +            
Sbjct: 668 DDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG--NY 724

Query: 379 NGLSKLTTLEIH 390
                LTT+++ 
Sbjct: 725 KNTYLLTTIDLR 736

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 270 SSLPSS--LDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQ-LRR 326
              P+S  L +++ L  L     +++ +   G   KL  L    + IE++P +      +
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620

Query: 327 LQLLDLSNCWTLEVIAPNV-ISKLSRLEELYMGN 359
           ++ L  S+   L+ I        +  +  +    
Sbjct: 621 VEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSY 653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 25/118 (21%)

Query: 267 IGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSD-------IEQLPL 319
           I        LD    L    L    +    ++  +KK   +S +D+        I  +  
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 320 EIGQLRRLQLLDLSNC------------------WTLEVIAPNVISKLSRLEELYMGN 359
            I +L +LQ++  +N                              S L  L ++ + N
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 22/167 (13%), Positives = 51/167 (30%), Gaps = 48/167 (28%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLKDIAK---------------------------VGQL 301
              +P ++ +L  L+ L           +                           +   
Sbjct: 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395

Query: 302 KKLEVLSFRDSDIEQLP-------LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEE 354
           ++L +       I + P            L+  Q+ +L+N   +  I    I +L++L+ 
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR--ITFI-SKAIQRLTKLQI 452

Query: 355 LYM-GNSFKRWEKVEGGSNASL----------VELNGLSKLTTLEIH 390
           +Y   + F          +A+           +  + L  LT +E++
Sbjct: 453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 17/148 (11%)

Query: 254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSD 313
             +     +       +    +   L  + TL   G  +  I  V  L  L  L  +D+ 
Sbjct: 16  PALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74

Query: 314 IEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG-NSFKRWEKVEG--- 369
           I  L   +  L ++  L+LS    L+ ++   I+ L  ++ L +          + G   
Sbjct: 75  ITDLA-PLKNLTKITELELSGNP-LKNVSA--IAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 370 ------GSNA--SLVELNGLSKLTTLEI 389
                   N   ++  L GL+ L  L I
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSI 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 14/117 (11%)

Query: 274 SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS 333
                L N   +      + D      L  +  LS   + +  +   +  L  L  L+L 
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELK 71

Query: 334 NCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
           +   +  +AP  +  L+++ EL +  +  +          ++  + GL  + TL++ 
Sbjct: 72  DN-QITDLAP--LKNLTKITELELSGNPLK----------NVSAIAGLQSIKTLDLT 115

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 8/124 (6%)

Query: 238 LHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP--SSLDRLINLQTLCLDGCRLKDI 295
           + T+ L S Q++D     + GL  LQ   +  + +   S L  L NLQ L +   ++ D+
Sbjct: 109 IKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL 166

Query: 296 AKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEEL 355
             +  L KL  L   D+ I  +   +  L  L  + L N   +  ++P  ++  S L  +
Sbjct: 167 TPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNN-QISDVSP--LANTSNLFIV 222

Query: 356 YMGN 359
            + N
Sbjct: 223 TLTN 226

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 7e-10
 Identities = 28/210 (13%), Positives = 66/210 (31%), Gaps = 23/210 (10%)

Query: 247 QVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKL 304
            + D        ++ L      I + +          L+ L L    + D+       KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 305 EVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN----- 359
           + L    + +  +  E      +  + L N   L +I    +     LE   +       
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRGNGFHC 251

Query: 360 -----SFKRWEKVEGGSNASLVELNG-----LSKLTTLEIHVRYAEILP----QDLVSVE 405
                 F + ++V+  +  ++ +L G      +  T         E LP      L++++
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

Query: 406 LQRYKMFIGEARGRWFVKSETSRLMKLERL 435
            + + +  G+      ++ E     +   +
Sbjct: 312 RKEHALLSGQGSETERLECERENQARQREI 341

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 21/132 (15%)

Query: 247 QVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKL 304
           Q      +    +K L   G  + S    + L     L+ L L    L +   +  L  L
Sbjct: 24  QALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTL 82

Query: 305 EVLSFRDSDIEQLP-----------------LEIGQLRRLQLLDLSNCWTLEVIAPNVIS 347
             L   ++ +++L                  +   + +  + + L+N   + ++      
Sbjct: 83  RTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEG 141

Query: 348 KLSRLEELYMGN 359
             SR++ L +  
Sbjct: 142 CRSRVQYLDLKL 153

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 16/98 (16%)

Query: 292 LKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQ-LRRLQLLDLSNCWTLEVIAPNVISKLS 350
           + +I       + ++    DS ++Q    + Q    ++ LDLS    L  I+   ++  +
Sbjct: 2   IHEIK--QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFT 58

Query: 351 RLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLTTL 387
           +LE L +  N                ++L  LS L TL
Sbjct: 59  KLELLNLSSNVLY-----------ETLDLESLSTLRTL 85

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 9/126 (7%)

Query: 238 LHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAK 297
           L   G CS         G   LK L     G  ++ S+   L  L+ L      LK +++
Sbjct: 359 LSFKGCCS-----QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 298 VG---QLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLE 353
                 L+ L  L    +        I   L  L++L ++     E   P++ ++L  L 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 354 ELYMGN 359
            L +  
Sbjct: 474 FLDLSQ 479

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 63/348 (18%), Positives = 112/348 (32%), Gaps = 68/348 (19%)

Query: 248 VSDHFFEGMEGLKVL--QFPGIGSSSLPSSLDRLINLQTLCLDGCRLK-----DIAKVGQ 300
           + +     ++ LK L      I S  LP     L NL+ L L   +++     D+  + Q
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 301 LKKLEV-LSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELY-MG 358
           +  L + L    + +  +     +  RL  L L N +    +    I  L+ LE    + 
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 359 NSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARG 418
             F+    +E    ++   L GL  LT  E  + Y +    D++ +              
Sbjct: 235 GEFRNEGNLEKFDKSA---LEGLCNLTIEEFRLAYLDYYLDDIIDL-------------- 277

Query: 419 RWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGF 478
                        L  + S S  L +  +  +   + +   + LE V     +       
Sbjct: 278 ----------FNCLTNVSSFS--LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-KL 324

Query: 479 PRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYL---------------IGLANLET 523
             LK L   S         +   V     P LE L L                G  +L+ 
Sbjct: 325 KSLKRLTFTS----NKGGNAFSEVDL---PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 524 ICCS--QL----REDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQ 565
           +  S   +            L  ++ +H + LK +  FS+  +L  L 
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLI 424

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 45/170 (26%), Positives = 64/170 (37%), Gaps = 19/170 (11%)

Query: 230 CPRLGLFLLHTIGL--CSIQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTL 285
               G   L  + L    +      F G+E L+ L F    +   S  S    L NL  L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 286 CLDGCRLKDIAK--VGQLKKLEVLSFRDSDIEQ--LPLEIGQLRRLQLLDLSNCWTLEVI 341
            +     +         L  LEVL    +  ++  LP    +LR L  LDLS C  LE +
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQL 485

Query: 342 APNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
           +P   + LS L+ L M  N  K    V  G        + L+ L  + +H
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKS---VPDGI------FDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 13/164 (7%)

Query: 231 PRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGC 290
                F    + L + +        ++ LK L F      +  S +D L +L+ L L   
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRN 357

Query: 291 RLKDIAKV----GQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVI 346
            L               L+ L    + +  +      L +L+ LD  +    ++   +V 
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 347 SKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
             L  L  L + ++         G        NGLS L  L++ 
Sbjct: 418 LSLRNLIYLDISHT--HTRVAFNGI------FNGLSSLEVLKMA 453

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 12/116 (10%)

Query: 252 FFEGMEGLKVLQFPGIGSSSL----PSSLDRLINLQTLCLDGCRLKDIAKVG---QLKKL 304
            F  +  L  L    I  +          + L +L+ L + G   ++        +L+ L
Sbjct: 416 VFLSLRNLIYLD---ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 305 EVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
             L      +EQL       L  LQ+L++++   L+ +   +  +L+ L+++++  
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 248 VSDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDIAKV--GQLKK 303
             +  F G+  L+VL+  G     + LP     L NL  L L  C+L+ ++      L  
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 304 LEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSN 334
           L+VL+   + ++ +P  I  +L  LQ + L  
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 8/117 (6%)

Query: 248 VSDHFFEGMEGLKVL---QFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKDIAKVGQLKK 303
           +  + F  +  L+ L   +   +  S +   + + L NL+ L L  C L++I  +  L K
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRL--SYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK 208

Query: 304 LEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
           L+ L    + +  +       L  LQ L +     ++VI  N    L  L E+ + +
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAH 264

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 16/143 (11%)

Query: 253 FEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKDIAK--VGQLKKLEVLSF 309
           F+ +  L++LQ       ++   + + L NL TL L   RL  I       L KL+ L  
Sbjct: 84  FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143

Query: 310 RDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKV 367
           R++ IE +P     ++  L+ LDL     L  I+      LS L  L +   + +     
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----- 198

Query: 368 EGGSNASLVELNGLSKLTTLEIH 390
                  +  L  L KL  L++ 
Sbjct: 199 ------EIPNLTPLIKLDELDLS 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 18/119 (15%)

Query: 274 SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS 333
            S D         L    + D     +L  ++ +   +SDI+ +   I  L  +  L L+
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLN 76

Query: 334 NCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSN--ASLVELNGLSKLTTLEIH 390
               L  I P  ++ L  L  L++              N    L  L  L KL +L + 
Sbjct: 77  GNK-LTDIKP--LANLKNLGWLFLDE------------NKVKDLSSLKDLKKLKSLSLE 120

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 18/118 (15%)

Query: 274 SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS 333
           SSL  L  L++L L+   + DI  +  L +LE L   ++ I  +   + +L +L  L L 
Sbjct: 106 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLE 164

Query: 334 NCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSN--ASLVELNGLSKLTTLEI 389
           +   +  I P  ++ L++L+ LY+              N  + L  L GL  L  LE+
Sbjct: 165 DN-QISDIVP--LAGLTKLQNLYLSK------------NHISDLRALAGLKNLDVLEL 207

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 17/115 (14%)

Query: 274 SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS 333
             L  L NL  L LD  ++KD++ +  LKKL+ LS   + I  +   +  L +L+ L L 
Sbjct: 84  KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLG 142

Query: 334 NCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE 388
           N   +  I    +S+L++L+ L +              +  + ++  L+ LT L+
Sbjct: 143 NN-KITDITV--LSRLTKLDTLSL-------------EDNQISDIVPLAGLTKLQ 181

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 238 LHTIGLCSIQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIA 296
           L ++ L + +++D      +  L  L       S +   L  L  LQ L L    + D+ 
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLR 194

Query: 297 KVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEEL 355
            +  LK L+VL     +    P+     L     +  ++     ++ P +IS     E+ 
Sbjct: 195 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG---SLVTPEIISDDGDYEKP 251

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 14/134 (10%)

Query: 259 LKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVG---QLKKLEVLSFRDSDIE 315
           L+ L     G+  + ++   L  LQ L      LK + +      L+KL  L    ++ +
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 316 QLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNA 373
                I   L  L  L ++     +    NV +  + L  L +     ++   +  G   
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ---ISWGV-- 492

Query: 374 SLVELNGLSKLTTL 387
                + L +L  L
Sbjct: 493 ----FDTLHRLQLL 502

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 248 VSDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDIAKV--GQLKK 303
             D  F G+  L  L+  G     ++L +      NL  L L  C+L+ I+      L +
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 304 LEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSF 361
           L++L+   +++  L      QL  L  LD S    +E     +      L    +  NS 
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 34/135 (25%), Positives = 47/135 (34%), Gaps = 9/135 (6%)

Query: 233 LGLFLLHTIGL--CSIQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLD 288
           LG   L  + L      +    F G+E L+ L F    +   +  S+   L  L  L + 
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 289 GCRLKDIAK--VGQLKKLEVLSFRDSDIEQLPLE--IGQLRRLQLLDLSNCWTLEVIAPN 344
               K         L  L  L    +  +   L         L  LDLS C  LE I+  
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWG 491

Query: 345 VISKLSRLEELYMGN 359
           V   L RL+ L M +
Sbjct: 492 VFDTLHRLQLLNMSH 506

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 48/322 (14%), Positives = 97/322 (30%), Gaps = 37/322 (11%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLKDIAK--VGQLKKLEVLSFRDSDIEQLPLE-IGQLR 325
                 S      LQ L L  C ++ I       L  L  L    + I+         L 
Sbjct: 45  KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104

Query: 326 RLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSN-ASLVELNGLS- 382
            L+ L       L  +    I +L  L++L +  N     +     SN  +LV ++ LS 
Sbjct: 105 SLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD-LSY 162

Query: 383 -KLTTLEIHV-RYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERL---KS 437
             + T+ ++  ++    PQ  +S+++    +         F++ +  + +KL  L    +
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPI--------DFIQDQAFQGIKLHELTLRGN 214

Query: 438 VSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVG 497
            +           L       L   E       E+ +      L  + ++          
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274

Query: 498 SVRRVGCEVFPLLETLYL-----------IGLANLETICCSQLR----EDQSFSNLRIIE 542
           S   V       +  + L                 +++   + +           L+ + 
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT 334

Query: 543 VEHCNKLKHLFSFSMAKNLLWL 564
           +   NK    F      +L +L
Sbjct: 335 LTM-NKGSISFKKVALPSLSYL 355

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 12/165 (7%)

Query: 248 VSDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDIAK------VG 299
           +       +  LK L      I S  LP+    L NL  + L    ++ I          
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 300 QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-G 358
             +    L    + I+ +  +  Q  +L  L L   +    I    +  L+ L    +  
Sbjct: 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 359 NSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVS 403
             FK    +E    +    + GL  +T  E  + Y      D+V 
Sbjct: 239 GEFKDERNLEIFEPSI---MEGLCDVTIDEFRLTYTNDFSDDIVK 280

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 31/160 (19%), Positives = 48/160 (30%), Gaps = 25/160 (15%)

Query: 248 VSDHFFEGMEGLKVLQFPGIG---SSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKL 304
                 EG+  + + +F        S        L N+  + L G  +K +  V +  K 
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309

Query: 305 EVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN---SF 361
           + LS     ++Q P     L  L+ L L+               L  L  L +     SF
Sbjct: 310 QSLSIIRCQLKQFP--TLDLPFLKSLTLTMNKGSI---SFKKVALPSLSYLDLSRNALSF 364

Query: 362 KRWEKVEGGSNASLVELN--------------GLSKLTTL 387
                       SL  L+              GL +L  L
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 404

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 27/126 (21%), Positives = 39/126 (30%), Gaps = 13/126 (10%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLKDIAK--VGQLKKLEVLSFRDSDIEQLPLE-IGQLR 325
                 S      LQ L L  C ++ I       L  L  L    + I+ L L     L 
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 326 RLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKL 384
            LQ L       L  +    I  L  L+EL +  N  +                + L+ L
Sbjct: 101 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQ------SFKLPE--YFSNLTNL 151

Query: 385 TTLEIH 390
             L++ 
Sbjct: 152 EHLDLS 157

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 14/163 (8%)

Query: 230 CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDG 289
            P L    L   GL           G   LK L     G  ++ S+   L  L+ L    
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405

Query: 290 CRLKDIAKVG---QLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNV 345
             LK +++      L+ L  L    +            L  L++L ++     E   P++
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 346 ISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLTTL 387
            ++L  L  L +     +         + +    N LS L  L
Sbjct: 466 FTELRNLTFLDLSQCQLE-------QLSPTA--FNSLSSLQVL 499

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 15/162 (9%)

Query: 234 GLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLK 293
             F    + L + +        ++ LK L F      +  S +D L +L+ L L    L 
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLS 360

Query: 294 DIAKV----GQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKL 349
                         L+ L    + +  +      L +L+ LD  +    ++   +V   L
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 350 SRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
             L  L +     +        +   +   NGLS L  L++ 
Sbjct: 421 RNLIYLDISHTHTR-------VAFNGI--FNGLSSLEVLKMA 453

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 8e-08
 Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 233 LGLFLLHTIGL--CSIQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLD 288
            G   L  + L    +      F G+E L+ L F    +   S  S    L NL  L + 
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 289 GCRLKDIAK--VGQLKKLEVLSFRDSDIEQ--LPLEIGQLRRLQLLDLSNCWTLEVIAPN 344
               +         L  LEVL    +  ++  LP    +LR L  LDLS C  LE ++P 
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT 488

Query: 345 VISKLSRLEELYMGN 359
             + LS L+ L M +
Sbjct: 489 AFNSLSSLQVLNMSH 503

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 248 VSDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDIAK--VGQLKK 303
           + +     ++ LK L      I S  LP     L NL+ L L   +++ I    +  L +
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 304 LEV----LSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-G 358
           + +    L    + +  +     +  RL  L L N +    +    I  L+ LE   +  
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 359 NSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSV 404
             F+    +E    ++   L GL  LT  E  + Y +    D++ +
Sbjct: 235 GEFRNEGNLEKFDKSA---LEGLCNLTIEEFRLAYLDYYLDDIIDL 277

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 8/119 (6%)

Query: 250 DHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDIAK--VGQLKKLE 305
           +  F G+  L+VL+  G     + LP     L NL  L L  C+L+ ++      L  L+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 306 VLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKL-SRLEELYM-GNSF 361
           VL+   ++   L       L  LQ+LD S    +       +    S L  L +  N F
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 25/138 (18%)

Query: 247 QVSDHFFEGMEGLKV----LQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLK 302
           +      EG+  L +    L +       +    + L N+ +  L    ++ +       
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 303 KLEVLSFRDSDIEQLP--------------------LEIGQLRRLQLLDLS-NCWTLEVI 341
             + L   +    Q P                         L  L+ LDLS N  + +  
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 342 APNVISKLSRLEELYMGN 359
                   + L+ L +  
Sbjct: 365 CSQSDFGTTSLKYLDLSF 382

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 270 SSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLP--LEIGQLRRL 327
            +LP +L  L  L+ L      L+++  V  L +L+ L   ++ ++Q      +    RL
Sbjct: 476 RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 328 QLLDLSN--CWTLEVIAPNVISKLSRLEEL 355
            LL+L        E I   +   L  +  +
Sbjct: 536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL 332
            ++L     L  L LD   L  +   G L  L  L    + ++ LPL    L  L +LD+
Sbjct: 48  LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107

Query: 333 SNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLS----KLTTL 387
           S    L  +    +  L  L+ELY+ GN  K    +  G      +L  LS     LT L
Sbjct: 108 SFN-RLTSLPLGALRGLGELQELYLKGNELKT---LPPGLLTPTPKLEKLSLANNNLTEL 163

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLD 288
              RL    L    L  +QV       +  L  L        SLP     L  L  L + 
Sbjct: 53  PYTRLTQLNLDRAELTKLQV----DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108

Query: 289 GCRLKDI-AKV-GQLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNV 345
             RL  +       L +L+ L  + ++++ LP  +     +L+ L L+N   L  +   +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGL 167

Query: 346 ISKLSRLEELYMGN 359
           ++ L  L+ L +  
Sbjct: 168 LNGLENLDTLLLQE 181

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 60/391 (15%), Positives = 117/391 (29%), Gaps = 61/391 (15%)

Query: 247 QVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDIAK--VGQLK 302
            V+   F  +E L++L+        +    +   L NL+ L L   ++  +       L 
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97

Query: 303 KLEVLSFRDSDIEQLPLE---IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-G 358
            L  L      +    L+      L+ L  LDLS      +       KL+ L+ +    
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 359 NSFKRWEK--VEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA 416
           N      +  +E     +L   + L+  +                 ++ L+   + +   
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFS-LAANSLYSRVSVDWGKCMNPFRNMVLE--ILDVSGN 214

Query: 417 RGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSV-VHELD-- 473
                +    S  +   +  S+ +     G        +D    T  G+    V  LD  
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274

Query: 474 --------DG--EGFPRLKHLYVESCS---------------EILHIVG-SVRRVGCEVF 507
                       E    LK L +                   ++L++    +  +    F
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334

Query: 508 ---PLLETLYL-------------IGLANLET--ICCSQLREDQSFSNLRIIEVEHCNKL 549
              P +  + L               L  L+T  +  + L       ++  I     NKL
Sbjct: 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI-FLSGNKL 393

Query: 550 KHLFSFSMAKNLLWLQKVGVEECDELKMIIG 580
             L   ++  NL+ L +  +E  D L  ++ 
Sbjct: 394 VTLPKINLTANLIHLSENRLENLDILYFLLR 424

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 262 LQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVG---QLKKLEVLSFRDSDIEQLP 318
           L    + +  +   L R+ +LQ L L+  R    +      +   LE L   ++ ++   
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467

Query: 319 LE------IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
                      L  LQ+L L++   L  + P V S L+ L  L + +
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNS 513

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 26/146 (17%), Positives = 61/146 (41%), Gaps = 13/146 (8%)

Query: 248 VSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVL 307
           + D  F+ +E L+ L        +  +++  + ++  + L G +L  + K+       ++
Sbjct: 353 IQDQTFKFLEKLQTLDL----RDNALTTIHFIPSIPDIFLSGNKLVTLPKINL--TANLI 406

Query: 308 SFRDSDIEQLPLE--IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRW 364
              ++ +E L +   + ++  LQ+L L+             S+   LE+L++  N  +  
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 365 EKVEGGSNASLVELNGLSKLTTLEIH 390
            + E   +       GLS L  L ++
Sbjct: 467 WETELCWDV----FEGLSHLQVLYLN 488

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 12/129 (9%)

Query: 270 SSLPSSLDRLINLQTLCLDGCRLKDIAKV--GQLKKLEVLSFRDSDIEQL--PLEIGQLR 325
           + +P  L+     + L L    ++ +       L++L++L                  L 
Sbjct: 17  TQVPQVLN---TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 326 RLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLS--- 382
            L++LDL +   +  + P+    L  L EL +         ++ G   +L  L  L    
Sbjct: 74  NLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 383 -KLTTLEIH 390
            ++ +L +H
Sbjct: 133 NQIRSLYLH 141

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 13/121 (10%)

Query: 249 SDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVG------- 299
             +F   +  L++L        S S   +     +L+ L L    L+   +         
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 300 QLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG 358
            L  L+VL    + +  LP  +   L  L+ L L++   L V++ N +   + LE L + 
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHNDL--PANLEILDIS 534

Query: 359 N 359
            
Sbjct: 535 R 535

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKV--GQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLL 330
            + L     L  + L    L+ I      ++++LE L   ++ +  L L    +  L++L
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300

Query: 331 DLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELN 379
           DLS+   L  +      +  RLE LY+  NS      ++  ++ +L  L 
Sbjct: 301 DLSHN-HLLHV-ERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 14/126 (11%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLKDIAK--VGQLKKLEVLSFRDSDIEQLPLEI-GQLR 325
                     L N + +      ++ +    +   +++E+L+  D  IE++         
Sbjct: 34  DVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH 93

Query: 326 RLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKL 384
            +Q L +     +  + P+V   +  L  L +  N       +  G        +   KL
Sbjct: 94  TIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSS---LPRGI------FHNTPKL 143

Query: 385 TTLEIH 390
           TTL + 
Sbjct: 144 TTLSMS 149

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 247 QVSDHFFEGMEGLKVL-----QFPGIGSSSLPS------------SLDRLINLQTLCLDG 289
           ++ D  F+    L+ L     +   +  S +PS            +L   I ++ L    
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214

Query: 290 CRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKL 349
             +  +       +L +L  + +++      +     L  +DLS    LE I  +   K+
Sbjct: 215 NSINVVRG-PVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKM 271

Query: 350 SRLEELYMGN 359
            RLE LY+ N
Sbjct: 272 QRLERLYISN 281

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 9/129 (6%)

Query: 270 SSLPSS-LDRLINLQTLCLDGCRLKDIAKV--GQLKKLEVLSFRDSDIEQLPLEIGQ-LR 325
             LP++ LD    ++ L L+  ++++I          ++ L    + I  LP  + Q + 
Sbjct: 58  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 326 RLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLS-- 382
            L +L L     L  +   +     +L  L M  N+ +R E     +  SL  L  LS  
Sbjct: 118 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ-LSSN 175

Query: 383 KLTTLEIHV 391
           +LT +++ +
Sbjct: 176 RLTHVDLSL 184

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 270 SSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEI-GQLRRLQ 328
           + +   +   + L  L L    L D A +     L  +    +++E++      +++RL+
Sbjct: 218 NVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275

Query: 329 LLDLS-NCWTLEVIAPNVISKLSRLEELYMGN 359
            L +S N   L  +       +  L+ L + +
Sbjct: 276 RLYISNNR--LVAL-NLYGQPIPTLKVLDLSH 304

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 14/125 (11%)

Query: 270 SSLPSSLDRLINLQTLCLD--GCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEI-GQLRR 326
             + S+L        + +D     +    +   L   ++++F++S + +LP  +    R+
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 70

Query: 327 LQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLT 385
           ++LL+L++   +E I     +    +++LYM  N+ +    +             +  LT
Sbjct: 71  VELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR---YLPPHV------FQNVPLLT 120

Query: 386 TLEIH 390
            L + 
Sbjct: 121 VLVLE 125

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 15/148 (10%)

Query: 247 QVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKDIAK--VGQLKK 303
            V    F  +  L+ L         +P      L NL  L +   ++  +       L  
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 304 LEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSF 361
           L+ L   D+D+  +       L  L+ L L  C  L  I    +S L  L  L +   + 
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 362 KRWEKVEGGSNASLVELNGLSKLTTLEI 389
                +   S         L +L  LEI
Sbjct: 189 ---NAIRDYS------FKRLYRLKVLEI 207

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.0 bits (130), Expect = 8e-08
 Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 15/148 (10%)

Query: 248 VSDHFFEGMEGLKVLQFPGI-GSSSLPSSLDRLINLQTLCLDGCRLKDIAKV--GQLKKL 304
           + D+ F+ +  LKVL+        ++  +    +NL +L +  C L  +  +    L  L
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250

Query: 305 EVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFK 362
             L+   + I  +   +  +L RLQ + L     L V+ P     L+ L  L + GN   
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 363 RWEKVEGGSNASLVELNGLSKLTTLEIH 390
               +E          + +  L TL + 
Sbjct: 310 T---LEESV------FHSVGNLETLILD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 15/148 (10%)

Query: 248 VSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKDIAKV--GQLKKL 304
           ++   F     L+ L+      S++   + + L NL+TL L   RLK I       L  L
Sbjct: 47  LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106

Query: 305 EVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFK 362
             L   ++ I  L   +   L  L+ L++ +   L  I+    S L+ LE+L +   +  
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT 165

Query: 363 RWEKVEGGSNASLVELNGLSKLTTLEIH 390
               +   +      L+ L  L  L + 
Sbjct: 166 S---IPTEA------LSHLHGLIVLRLR 184

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 247 QVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKDIAKV--GQLKK 303
            V       +  L+ L       S++    L  L+ LQ + L G +L  +       L  
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 304 LEVLSFRDSDIEQLPLEI-GQLRRLQLLDLS-NCW 336
           L VL+   + +  L   +   +  L+ L L  N  
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKV--GQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLL 330
            + L     L  + L    L+ I      ++++LE L   ++ +  L L    +  L++L
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306

Query: 331 DLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELN 379
           DLS+   L V       +  RLE LY+  NS      ++  ++ +L  L 
Sbjct: 307 DLSHNHLLHV--ERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKV--GQLKKLEVLSFRDSDIEQLPLEIGQ-LRRLQL 329
            + LD    ++ L L+  ++++I          ++ L    + I  LP  + Q +  L +
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 330 LDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
           L L     L  +   +     +L  L M N
Sbjct: 128 LVLERND-LSSLPRGIFHNTPKLTTLSMSN 156

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 247 QVSDHFFEGMEGLKVL-----QFPGIGSSSLPS------------SLDRLINLQTLCLDG 289
           ++ D  F+    L+ L     +   +  S +PS            +L   I ++ L    
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220

Query: 290 CRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKL 349
             +  +       +L +L  + +++      +     L  +DLS    LE I  +   K+
Sbjct: 221 NSINVVRG-PVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKM 277

Query: 350 SRLEELYMGN 359
            RLE LY+ N
Sbjct: 278 QRLERLYISN 287

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 18/92 (19%), Positives = 43/92 (46%), Gaps = 12/92 (13%)

Query: 301 LKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-G 358
           L   ++++F++S + +LP  +    R+++LL+L++   +E I     +    +++LYM  
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGF 108

Query: 359 NSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
           N+ +    +             +  LT L + 
Sbjct: 109 NAIR---YLPPHV------FQNVPLLTVLVLE 131

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 13/142 (9%)

Query: 253 FEGMEGLKVLQFPGIGSSSLPSSL-DRLINLQTLCLDGCRLKDI-AKV-GQLKKLEVLSF 309
           F  +  L++L        +LP+ +   L NL+TL +   +L+ +   V  QL  L  L  
Sbjct: 57  FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116

Query: 310 RDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVE 368
             + ++ LP  +   L +L  L L     L+ +   V  KL+ L+EL + N+  + ++V 
Sbjct: 117 DRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN--QLKRVP 173

Query: 369 GGSNASLVELNGLSKLTTLEIH 390
            G+       + L++L TL++ 
Sbjct: 174 EGA------FDKLTELKTLKLD 189

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 270 SSLPSS-LDRLINLQTLCLDGCRLKDI-AKV-GQLKKLEVLSFRDSDIEQLPLEI-GQLR 325
           SSLPS    RL  L+ L L+  +L+ + A +  +LK LE L   D+ ++ LP+ +  QL 
Sbjct: 50  SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109

Query: 326 RLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
            L  L L     L+ + P V   L++L  L +G 
Sbjct: 110 NLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY 142

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQ 328
            ++   S ++L  L +L      + D+  + +L  L  L    ++I  L L   Q   L 
Sbjct: 31  QATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDL--SQNTNLT 88

Query: 329 LLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELN-GLSKLTTL 387
            L   +   L  +    ++ L++L  L    +  +  K++   N  L  LN   + LT +
Sbjct: 89  YLACDSN-KLTNLD---VTPLTKLTYLNCDTN--KLTKLDVSQNPLLTYLNCARNTLTEI 142

Query: 388 EI 389
           ++
Sbjct: 143 DV 144

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 22/165 (13%)

Query: 238 LHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAK 297
           L  +   + +++         L  L       + +   +     L  L     +      
Sbjct: 108 LTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD 165

Query: 298 VGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM 357
           V    +L  L    + I +L   + Q + L  L+      +  +    +++  +L  L  
Sbjct: 166 VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITKLD---LNQNIQLTFLDC 219

Query: 358 GNSFKRWEKVEGGSNASLVELN------------GLSKLTTLEIH 390
            ++  +  +++      L   +             LSKLTTL   
Sbjct: 220 SSN--KLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI 262

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 15/123 (12%)

Query: 270 SSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQL 329
           + +   +  L  L         L ++  V  L KL  L    +D+ ++ L      +L  
Sbjct: 225 TEID--VTPLTQLTYFDCSVNPLTEL-DVSTLSKLTTLHCIQTDLLEIDL--THNTQLIY 279

Query: 330 LDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLS--KLTT 386
                C  ++ +    ++  ++L  L           +++   N  LV L  L+  +LT 
Sbjct: 280 FQAEGCRKIKELD---VTHNTQLYLLDCQAAGI---TELDLSQNPKLVYLY-LNNTELTE 332

Query: 387 LEI 389
           L++
Sbjct: 333 LDV 335

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 23/116 (19%)

Query: 275 SLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSN 334
            L     L     +GCR      V    +L +L  + + I +L   + Q  +L  L L+N
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNN 327

Query: 335 C--WTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE 388
                L+      +S  ++L+ L   N               + + + + K+  L 
Sbjct: 328 TELTELD------VSHNTKLKSLSCVN------------A-HIQDFSSVGKIPALN 364

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 21/161 (13%)

Query: 248 VSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEV 306
           + D  F+ ++ L  L       S + P +   L+ L+ L L   +LK++ +    K L+ 
Sbjct: 67  IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQE 125

Query: 307 LSFRDSDIEQLPLEI-GQLRRLQLLDLS-NCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364
           L   +++I ++   +   L ++ +++L  N      I       + +L  + + ++    
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--NI 183

Query: 365 EKVEGGSNASLVEL---------------NGLSKLTTLEIH 390
             +  G   SL EL                GL+ L  L + 
Sbjct: 184 TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 23/176 (13%), Positives = 60/176 (34%), Gaps = 39/176 (22%)

Query: 243 LCSIQVSDHFFEGMEGLKVLQ-------------FPGIGS--------SSLPS-SLDRLI 280
           L S  + +  F+GM+ L  ++              P +          + + + SL  L 
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLN 216

Query: 281 NLQTLCLDGCRLKDIAKV--GQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS-NCWT 337
           NL  L L    +  +          L  L   ++ + ++P  +   + +Q++ L  N   
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN--N 274

Query: 338 LEVIAPNVI------SKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTL 387
           +  I  N        +K +    + + ++  ++ +++  +         +     +
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST------FRCVYVRAAV 324

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSD 313
           E  + LK L        +L         L+ L +   +L+ + ++     L+++   ++ 
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPP---LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164

Query: 314 IEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
           +++LP     L  +   +      LE +    +  L  L  +Y  N
Sbjct: 165 LKKLPDLPPSLEFIAAGNNQ----LEELPE--LQNLPFLTAIYADN 204

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 270 SSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQL 329
             LP      ++L+++      L+++ ++  L  L  +   ++ ++ LP     L  L +
Sbjct: 208 KKLPDLP---LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 264

Query: 330 LDLSNCWTLEVIAPNVISKLSRLEELYMGNS 360
            D      L  + P +   L+ L+      S
Sbjct: 265 RDNY----LTDL-PELPQSLTFLDVSENIFS 290

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 26/123 (21%)

Query: 270 SSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQL 329
           S L   LDR      L L+   L  + +      LE L    + + +LP     L+ L +
Sbjct: 63  SRLRDCLDR--QAHELELNNLGLSSLPE--LPPHLESLVASCNSLTELPELPQSLKSLLV 118

Query: 330 LDLSNCWTLEVIAPNVISKL-SRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLTTL 387
            + +            +S L   LE L +  N  +            L EL   S L  +
Sbjct: 119 DNNNL---------KALSDLPPLLEYLGVSNNQLE-----------KLPELQNSSFLKII 158

Query: 388 EIH 390
           ++ 
Sbjct: 159 DVD 161

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSD 313
           E  + L  L       S L        NL  L      ++ +        LE L+  ++ 
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPP---NLYYLNASSNEIRSL--CDLPPSLEELNVSNNK 328

Query: 314 IEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL 352
           + +LP    +L R   L  S    L  + P +   L +L
Sbjct: 329 LIELPALPPRLER---LIASFN-HLAEV-PELPQNLKQL 362

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 14/127 (11%)

Query: 262 LQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEI 321
              P I    + ++L  L   + L L    ++ I+ +  ++ L +LS   + I+++    
Sbjct: 32  GMIPPI--EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLD 89

Query: 322 GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG-NSFKRWEKVEGGSNASLVELNG 380
                L+ L +S    +  ++   I KL  L  LYM  N    W +++        +L  
Sbjct: 90  AVADTLEELWISYN-QIASLSG--IEKLVNLRVLYMSNNKITNWGEID--------KLAA 138

Query: 381 LSKLTTL 387
           L KL  L
Sbjct: 139 LDKLEDL 145

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 28/116 (24%), Positives = 37/116 (31%), Gaps = 5/116 (4%)

Query: 248 VSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKDIAK--VGQLKKL 304
           V    F G+  L  L     G   L       L  LQ L L    L+ +       L  L
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

Query: 305 EVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
             L    + I  +P      L  L  L L     +  + P+    L RL  LY+  
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFA 210

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 15/122 (12%)

Query: 270 SSLPSSLDRLINLQTLCLDGCRLKDIAKV--GQLKKLEVLSFRDSDIEQLPLEI-GQLRR 326
            ++P  +      Q + L G R+  +        + L +L    + + ++       L  
Sbjct: 24  QAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 327 LQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLT 385
           L+ LDLS+   L  + P     L RL  L++     +    +  G         GL+ L 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE---LGPGL------FRGLAALQ 132

Query: 386 TL 387
            L
Sbjct: 133 YL 134

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 270 SSLPS-SLDRLINLQTLCLDGCRLKDI-AKV-GQLKKLEVLSFRDSDIEQLPLEI-GQLR 325
             L S S      LQ L L  C ++ I       L  L  L    + I+ L L     L 
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 326 RLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
            LQ L       L  +    I  L  L+EL + +
Sbjct: 101 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAH 133

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 270 SSLPSSL-DRLINLQTLCLDGCRLKDIAKV--GQLKKLEVLSFRDSDIEQLPLEIG---Q 323
            SL       L +LQ L      L  +     G LK L+ L+   + I+   L       
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSN 147

Query: 324 LRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM 357
           L  L+ LDLS+   ++ I    +  L ++  L +
Sbjct: 148 LTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 13/127 (10%)

Query: 270 SSLPS--SLDRLINLQTLCLDGCRLKDI-AKV-GQLKKLEVLSFRDSDIEQLPLEI-GQL 324
           S L +  +  RL NL +L L    L  I ++    +  L  L    + +  L   +   L
Sbjct: 52  SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111

Query: 325 RRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSK 383
           + L++L L N   + V+  N    +++L++LY+  N   R           + + N L K
Sbjct: 112 QALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISR---FPVE---LIKDGNKLPK 164

Query: 384 LTTLEIH 390
           L  L++ 
Sbjct: 165 LMLLDLS 171

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 14/111 (12%)

Query: 281 NLQTLCLDGCRLKDIAKVG---QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWT 337
           +++ L LD  R  +    G   + ++LE LS  +  +  +   + +L +L+ L+LS+   
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLELSDN-R 75

Query: 338 LEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLTTL 387
           +      +  K   L  L + GN  K    +E         L  L  L +L
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE--------PLKKLENLKSL 118

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 2/101 (1%)

Query: 261 VLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQL-PL 319
           VL         L    D    L+ L      L  IA + +L KL+ L   D+ +     +
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 320 EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELY-MGN 359
              +   L  L+LS     ++     + KL  L+ L     
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 21/131 (16%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 231 PRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLD 288
             L   +L    L  +         M+ L+ L      +             +L +L + 
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 289 GCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISK 348
              L D        +++VL    + I+ +P ++ +L  LQ L++++   L+ +   +  +
Sbjct: 408 SNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDR 466

Query: 349 LSRLEELYMGN 359
           L+ L+++++  
Sbjct: 467 LTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 40/300 (13%), Positives = 91/300 (30%), Gaps = 16/300 (5%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDI-AKV-GQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLL 330
            S +  L  L+ L +   R++ +   V    ++LE L    + + ++         L+ L
Sbjct: 38  TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHL 95

Query: 331 DLS-NCWTLEVIAPNVISKLSRLEELYMG-NSFKRWEKVEGGSNASLVELNGLSKLTTLE 388
           DLS N +   +        +S+L+ L +     ++   +          L  L +    +
Sbjct: 96  DLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK 154

Query: 389 IHVRYAEILPQDLVSVELQRYKMF--IGEARGRWFVKSETSRLMKLERLKSVSILLRNPG 446
                 +    + + +     K F  I +   +     E S +  +      S  L    
Sbjct: 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214

Query: 447 MRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEV 506
                 +  +L L  +E   +    +        + +  + +      +           
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY---S 271

Query: 507 FPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLK--HLFSFSMAKNLLWL 564
              L+ L +  + +           +  FSN+ I      +  +  H+   S     L L
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEI-FSNMNIKNF-TVSGTRMVHMLCPSKISPFLHL 329

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 29/149 (19%), Positives = 58/149 (38%), Gaps = 36/149 (24%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLKDIAKVG----QLKKLEVLSFRDSDIEQLPLEIG-- 322
           + ++  +   L  L+TL L   +LK+++K+     Q+K L+ L    + +     +    
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

Query: 323 QLRRLQLLDLSNC-----------WTLEVIA---------PNVISKLSRLEELYM-GNSF 361
             + L  L++S+              ++V+          P  + KL  L+EL +  N  
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL 456

Query: 362 KRWEKVEGGSNASLVELNGLSKLTTLEIH 390
           K    V  G        + L+ L  + +H
Sbjct: 457 KS---VPDGI------FDRLTSLQKIWLH 476

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 12/116 (10%)

Query: 274 SSLDRLINLQTLCLDGCRLKDIAKVG-QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL 332
           +     +  + L L G ++  I  +G  L + + + F D++I +L      LRRL+ L +
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLV 71

Query: 333 SNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLTTL 387
           +N   +  I   +   L  L EL +  NS      ++         L  L  LT L
Sbjct: 72  NNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLD--------PLASLKSLTYL 118

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 253 FEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDS 312
           +      + L   G     + +    L     +      ++ +     L++L+ L   ++
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74

Query: 313 DIEQLPLEIGQ-LRRLQLLDLSNCW--TLEVIAPNVISKLSRLEELY-MGN 359
            I ++   + Q L  L  L L+N     L  + P  ++ L  L  L  + N
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDP--LASLKSLTYLCILRN 123

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 6/136 (4%)

Query: 254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSD 313
               GLK L   G   +SLP        L+ L + G RL  +        L  LS   + 
Sbjct: 218 ALPSGLKELIVSGNRLTSLPVLPS---ELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQ 272

Query: 314 IEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNA 373
           + +LP  +  L     ++L     L       + +++                       
Sbjct: 273 LTRLPESLIHLSSETTVNLEGNP-LSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331

Query: 374 SLVELNGLSKLTTLEI 389
             + L     L     
Sbjct: 332 RALHLAAADWLVPARE 347

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 14/103 (13%)

Query: 258 GLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQL 317
           G  VL     G ++LP  L    ++ TL +    L  +       +L  L    + +  L
Sbjct: 41  GNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSL 96

Query: 318 PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKL-SRLEELYMGN 359
           P+    L  L +                +  L S L +L++  
Sbjct: 97  PVLPPGLLELSIFSNPL---------THLPALPSGLCKLWIFG 130

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSD 313
                L+ L+  G   +SLP     L+ L         L  +        L  L    + 
Sbjct: 78  ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQ 132

Query: 314 IEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLE 353
           +  LP+    L+ L + D      L  + P + S+L +L 
Sbjct: 133 LTSLPVLPPGLQELSVSDNQ----LASL-PALPSELCKLW 167

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 13/106 (12%)

Query: 254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSD 313
               GL+ L       +SLP+       L  L     +L  +        L+ LS  D+ 
Sbjct: 138 VLPPGLQELSVSDNQLASLPALPS---ELCKLWAYNNQLTSLPM--LPSGLQELSVSDNQ 192

Query: 314 IEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359
           +  LP    +L +L   +      L  +        S L+EL +  
Sbjct: 193 LASLPTLPSELYKLWAYNNR----LTSLPAL----PSGLKELIVSG 230

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 18/171 (10%)

Query: 12  LSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVL 71
           L +E+ L++    V   MK     + A  I+  C G P+ +  +   L++   + W   L
Sbjct: 286 LGREKGLEILSLFVN--MKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYL 342

Query: 72  RQLRSSYAKEIDGME----KNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLL 127
           RQL++   K I        + +  ++ +S + L  E+ K  +    +  +   +P   L 
Sbjct: 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEML-REDIKDYYTDLSILQKDVKVPTKVLC 401

Query: 128 RYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLDGDAEDEVKMHDVIR 178
                          EE    +   +   KSL             +HD+  
Sbjct: 402 VL--------WDLETEEVEDILQEFVN--KSLLFCNRNGKSFCYYLHDLQV 442

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLK-DI-AKVGQLKKLEVLSFRDSDIE-QLPLEIGQLR 325
              +P ++ +L  L  L +    +   I   + Q+K L  L F  + +   LP  I  L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 326 RLQLLDLSN 334
            L  +    
Sbjct: 150 NLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.1 bits (113), Expect = 8e-06
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 272 LPSSLDRLINLQTLCLDGCRLKDIAK----VGQLKKLEVLSFRDSDIEQL----PLEIGQ 323
           L  +  +   +  L L G  L         +  L  L  L      I  L    P  I +
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--GGINNLVGPIPPAIAK 99

Query: 324 LRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSF 361
           L +L  L +++   +    P+ +S++  L  L    N+ 
Sbjct: 100 LTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNAL 137

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 269 SSSLPSSLDRLINLQTLCLDGCRLK-DIAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLRR 326
                       N Q + L    L  D+ KVG  K L  L  R++ I   LP  + QL+ 
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 327 LQLLDLSN 334
           L  L++S 
Sbjct: 270 LHSLNVSF 277

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 17/122 (13%)

Query: 271 SLPSSLDRLINLQTLCLDGCRLK-DI-AKVGQLKKL-EVLSFRDSDIE-QLPLEIGQLRR 326
           +LP S+  L NL  +  DG R+   I    G   KL   ++   + +  ++P     L  
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N 198

Query: 327 LQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLT 385
           L  +DLS    LE  A  +       +++++  NS              L ++     L 
Sbjct: 199 LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSL------AF----DLGKVGLSKNLN 247

Query: 386 TL 387
            L
Sbjct: 248 GL 249

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 270 SSLPSSLDRLINLQTLCLDGCRLKDI-AKVGQLKKLE----VLSFRDSDIEQLPLEIGQL 324
           + LP   +   +L+ L +    L+ + A   +    E        R++ I  +P  I  L
Sbjct: 173 TFLPELPE---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL 229

Query: 325 RRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWE 365
                + L +   L       +S+ +   + +    +    
Sbjct: 230 DPTCTIILEDN-PLSSRIRESLSQQTAQPDYHGPRIYFSMS 269

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 281 NLQTLCLDGCRLKDIAKV--GQLKKLEVLSFRDSD-IEQLPLEI-GQLRRLQLLDLSNCW 336
           + QTL L    L+ I       L  +  +       ++QL       L ++  +++ N  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 337 TLEVIAPNVISKLSRLEELYMGN 359
            L  I P+ + +L  L+ L + N
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFN 114

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 52/367 (14%), Positives = 103/367 (28%), Gaps = 58/367 (15%)

Query: 230 CPRLGLFLLHTIGLCSIQVSD--HFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCL 287
              L +   +      I   D          L  ++        L        NL+  C 
Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250

Query: 288 DGCR-----LKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIA 342
                     +    +   +KL  L        ++P+      +++ LDL          
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 343 PNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVEL-NGLSKLTTLEIHVRYAEILPQDL 401
             +I K   LE L   N            +  L  L     +L  L         + +  
Sbjct: 311 CTLIQKCPNLEVLETRNVI---------GDRGLEVLAQYCKQLKRLR--------IERGA 353

Query: 402 VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRML---LQRTEDLW 458
               ++  +  + +      + +      +LE +      + N  +  +   L+   D  
Sbjct: 354 DEQGMEDEEGLVSQRG----LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409

Query: 459 LETLEGVPSVVHE-LDDG-----EGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLET 512
           L  L+    +    LD+G      G  +L+          L  +G +  +G +  P +  
Sbjct: 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG-LSYIG-QYSPNVRW 467

Query: 513 LYL-------IGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQ 565
           + L        GL      C           NL+ +E+  C   +     +    L  L+
Sbjct: 468 MLLGYVGESDEGLMEFSRGCP----------NLQKLEMRGCCFSERAI-AAAVTKLPSLR 516

Query: 566 KVGVEEC 572
            + V+  
Sbjct: 517 YLWVQGY 523

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 43/330 (13%), Positives = 105/330 (31%), Gaps = 64/330 (19%)

Query: 248 VSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVG------QL 301
           ++    + +E LK+ +  G  +  L S +     ++TL ++     +             
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191

Query: 302 KKLEVLSFRDSDIEQLPLE-----IGQLRRLQLLDLSNCWTLEVIAP-NVISKLSRLEEL 355
             LEVL+F  ++  ++  +         R L  + + +   LE++      + L      
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251

Query: 356 YMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGE 415
            +       EK         +   GLS +   E+ + +       +  ++L      +  
Sbjct: 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP--FAAQIRKLDLLY--ALLET 307

Query: 416 ARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDG 475
                 +     +   LE L++ +++                      G+  +       
Sbjct: 308 EDHCTLI----QKCPNLEVLETRNVI-------------------GDRGLEVL------A 338

Query: 476 EGFPRLKHLYVESCSEILHIVGSVRRVG-------CEVFPLLETLYL----IGLANLETI 524
           +   +LK L +E  ++   +      V         +    LE + +    I   +LE+I
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 525 --CCSQLREDQSFSNLRIIEVEHCNKLKHL 552
                 L +       R++ ++   ++  L
Sbjct: 399 GTYLKNLCD------FRLVLLDREERITDL 422

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 281 NLQTLCLDGCRLKDIAKVG---QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWT 337
            ++ L LD C+  D    G   +   LE LS  +  +  +   + +L +L+ L+LS    
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSEN-R 82

Query: 338 LEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKLTTL 387
           +      +  KL  L  L + GN  K    +E         L  L  L +L
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE--------PLKKLECLKSL 125

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 261 VLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQL-PL 319
           VL         +       +NL+ L L    L  ++ + +L KL+ L   ++ I     +
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDM 89

Query: 320 EIGQLRRLQLLDLSNCW--TLEVIAPNVISKLSRLEELYMGN 359
              +L  L  L+LS      +  + P  + KL  L+ L + N
Sbjct: 90  LAEKLPNLTHLNLSGNKLKDISTLEP--LKKLECLKSLDLFN 129

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 20/133 (15%), Positives = 43/133 (32%), Gaps = 14/133 (10%)

Query: 262 LQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDI-AKV-GQLKKLEVLSFRDSDIEQLPL 319
           L               +L  L+ +     ++ DI          +  +    + +E +  
Sbjct: 39  LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98

Query: 320 EI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVE 377
           ++   L  L+ L L +   +  +  +    LS +  L +  N       V  G+      
Sbjct: 99  KMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITT---VAPGA------ 148

Query: 378 LNGLSKLTTLEIH 390
            + L  L+TL + 
Sbjct: 149 FDTLHSLSTLNLL 161

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 15/126 (11%)

Query: 270 SSLPSSL-DRLINLQTLCLDGCRLKDIAKV--GQLKKLEVLSFRDSDIEQLPLEI-GQLR 325
            +L  S+     +L+ L L    +  I       L  L  L+   + +  +   +   L 
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347

Query: 326 RLQLLDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGLSKL 384
           +L++LDLS    +  +       L  L+EL +  N  K    V  G        + L+ L
Sbjct: 348 KLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKS---VPDGI------FDRLTSL 397

Query: 385 TTLEIH 390
             + +H
Sbjct: 398 QKIWLH 403

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 9/115 (7%)

Query: 253 FEGMEGLKVLQFPG--IGSSSLPSSLDRLINLQTLCLDGCRLKDI-AKV-GQLKKLEVLS 308
           F  ++ L+ L+      G     ++   L +L  L LD  +   +       L  LEVL+
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109

Query: 309 FRDSDIEQLPLEIG---QLRRLQLLDLSNCWTLEVIAPN-VISKLSRLEELYMGN 359
               +++   L       L  L++L L +   ++ I P      + R   L +  
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTF 163

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 15/123 (12%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKV--GQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLL 330
              L R   L  L L   +++ I       L  L  L   ++ + ++P  +  L+ LQ++
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVV 269

Query: 331 DLSNCWTLEVIAPNVIS------KLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKL 384
            L     +  +  N         K +    + + N+   + +V+  +         ++  
Sbjct: 270 YLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT------FRCVTDR 322

Query: 385 TTL 387
             +
Sbjct: 323 LAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 14/121 (11%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIA-KVGQLK--KLEVLSFRDSDIEQLPLEIGQLRRLQL 329
                 L N+  + + G  L++   + G     KL  L   ++ +  +P ++     L  
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNE 197

Query: 330 LDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEI 389
           L L +   ++ I    + + S+L  L +G++  +   +E GS      L+ L  L  L +
Sbjct: 198 LHLDHN-KIQAIELEDLLRYSKLYRLGLGHN--QIRMIENGS------LSFLPTLRELHL 248

Query: 390 H 390
            
Sbjct: 249 D 249

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 17/127 (13%)

Query: 270 SSLPS-SLDRLINLQTLCLDGCRLKDIAKVG---QLKKLEVLSFRDSDIEQLPLEI-GQL 324
             +P  +      L+ + L   ++ ++A       L+ L  L    + I +LP  +   L
Sbjct: 45  KVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103

Query: 325 RRLQLLDLS-NCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSK 383
             LQLL L+ N   +  +  +    L  L  L + ++  + + +  G+       + L  
Sbjct: 104 FSLQLLLLNAN--KINCLRVDAFQDLHNLNLLSLYDN--KLQTIAKGT------FSPLRA 153

Query: 384 LTTLEIH 390
           + T+ + 
Sbjct: 154 IQTMHLA 160

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 64/349 (18%), Positives = 117/349 (33%), Gaps = 52/349 (14%)

Query: 238 LHTIGLCSIQVSD----HFFEGMEGLKVLQF---PGIGSSSLPSSLDRLINLQTLCLDGC 290
           L  I L  + V+D       +  +  KVL      G  +  L +      NL+ L L   
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166

Query: 291 RLKDIAKVG------QLKKLEVLSFR-------DSDIEQLPLEIGQLRRLQLLDLSNCWT 337
            + D++             L  L+          S +E+L   + +   L+ L L+    
Sbjct: 167 DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL---VTRCPNLKSLKLNRAVP 223

Query: 338 LEVIAPNVISKLSRLEELYMG--NSFKRWEKVEGGSNA-----SLVELNGLSKLTTLEIH 390
           LE +A  ++ +  +LEEL  G   +  R +   G S A      L  L+G        + 
Sbjct: 224 LEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282

Query: 391 VRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRML 450
                +  + L ++ L      +        +     +  KL+RL  V   + + G+ +L
Sbjct: 283 AV-YSVCSR-LTTLNLS--YATVQSYDLVKLL----CQCPKLQRL-WVLDYIEDAGLEVL 333

Query: 451 LQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVF--- 507
               +DL    +      V E +       L  +    C ++  ++   R++        
Sbjct: 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAALITI 392

Query: 508 ----PLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHL 552
               P +    L  +        +    D  F  +    VEHC  L+ L
Sbjct: 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI----VEHCKDLRRL 437

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 49/292 (16%), Positives = 94/292 (32%), Gaps = 60/292 (20%)

Query: 228 MRCPRLGLFLLHTIGLCSIQVSDHFFEGM----EGLKVLQ----FPGIGSSSLPSSLDRL 279
            R P+L        G  + +V    + G+     G K L+    F     + LP+     
Sbjct: 232 QRAPQL---EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288

Query: 280 INLQTLCLDGCRLKD---IAKVGQLKKLEVLSFR----DSDIEQLPLEIGQLRRLQLLDL 332
             L TL L    ++    +  + Q  KL+ L       D+ +E L       + L+ L +
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL---ASTCKDLRELRV 345

Query: 333 SNCWTLEVIAPNVIS---------KLSRLEELYMGNSFKRWEKVEGGSNASLVEL-NGLS 382
                  +     ++            +LE +               +NA+L+ +     
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR--------QMTNAALITIARNRP 397

Query: 383 KLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILL 442
            +T     +   E    D +++E     + IG         +       L RL S+S LL
Sbjct: 398 NMT--RFRLCIIEPKAPDYLTLEP----LDIG-------FGAIVEHCKDLRRL-SLSGLL 443

Query: 443 RNPGMRMLLQRTEDLWLETLEGVP----SVVHELDDGEGFPRLKHLYVESCS 490
            +     +    + + + ++         + H L    G   L+ L +  C 
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL---SGCDSLRKLEIRDCP 492

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 270 SSLPSSLDRLINLQTLCLDGCRLKDIAKV--GQLKKLEVLSFRDSDIEQLPLEIG---QL 324
           + +PS L R  N   L     +L+ I K        LE +    +D+ ++ +E      L
Sbjct: 22  TEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNL 78

Query: 325 RRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN----SFKRWEKVEGGSNASLVELNG 380
            +L  + +     L  I P     L  L+ L + N          K+       L ++  
Sbjct: 79  PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL-DIQD 137

Query: 381 LSKLTTLE 388
              + T+E
Sbjct: 138 NINIHTIE 145

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 21/165 (12%)

Query: 231 PRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGS-SSLPS-SLDRL-INLQTLCL 287
           P L   L+   G+  +   D          +L      +  ++   S   L      L L
Sbjct: 104 PNLQYLLISNTGIKHLP--DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161

Query: 288 DGCRLKDIAKV--GQLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPN 344
           +   +++I        +  E+    ++++E+LP ++        +LD+S    +  +   
Sbjct: 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY 220

Query: 345 VISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEI 389
            +  L +L      N               L  L  L  L    +
Sbjct: 221 GLENLKKLRARSTYN------------LKKLPTLEKLVALMEASL 253

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDI-AKV-GQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLL 330
              +  L  L+ L L   R++ +   V    + LE L    + ++ +      +  L+ L
Sbjct: 69  MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHL 126

Query: 331 DLS-NCWTLEVIAPNVISKLSRLEELYMGN 359
           DLS N +   +        L++L  L +  
Sbjct: 127 DLSFNDFD-VLPVCKEFGNLTKLTFLGLSA 155

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 20/140 (14%)

Query: 262 LQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVL------SFRDSD 313
           L    I  S+L   L +   LQ L L+G RL D  +  + +   L  L       F +  
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159

Query: 314 IEQLPLEIGQLRRLQLLDLSNCWTL--EVIAPNVISKLSRLEELYMGNSFKRWEKVEGGS 371
           ++ L   +    RL  L+LS C+    + +   V      + +L +    K         
Sbjct: 160 LQTL---LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL------Q 210

Query: 372 NASLVEL-NGLSKLTTLEIH 390
            + L  L      L  L++ 
Sbjct: 211 KSDLSTLVRRCPNLVHLDLS 230

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	582
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.75
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.71
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.71
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.71
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.7
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.69
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.69
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.68
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.63
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.63
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.61
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.6
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.58
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.57
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.56
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.54
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.53
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.52
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.5
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.48
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.47
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.42
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.39
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.33
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.3
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.23
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.19
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.09
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.84
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.84
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.72
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.16
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.94
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.89
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.68
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.54
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.35
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.62
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.57
2fna_A	357	Conserved hypothetical protein; structural genomic	94.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.91
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.87
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.08
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	92.38
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	80.78

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=1.9e-26  Score=250.01  Aligned_cols=144  Identities=24%  Similarity=0.290  Sum_probs=122.2

Q ss_pred             hhhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-Ch
Q 048810          198 DLEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PS  274 (582)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~  274 (582)
                      ..+..+|...+.+++++++++|.+..++..  .++++|++|+++++  ....+++..|.++++|++|++++|.++.+ |.
T Consensus        21 ~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~   98 (606)
T 3vq2_A           21 QKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC--EIETIEDKAWHGLHHLSNLILTGNPIQSFSPG   98 (606)
T ss_dssp             SCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred             CCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC--cccccCHHHhhchhhcCEeECCCCcccccChh
Confidence            445566666678999999999999887763  38999999999987  55667666779999999999999999886 78


Q ss_pred             hhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCC--ccchhhcCCCCCCEEcccccccccccCcc
Q 048810          275 SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIE--QLPLEIGQLRRLQLLDLSNCWTLEVIAPN  344 (582)
Q Consensus       275 ~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~  344 (582)
                      .++++++|++|++++|.++.  +..++++++|++|++++|.+.  .+|..++++++|++|++++| .+..+++.
T Consensus        99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~  171 (606)
T 3vq2_A           99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVN  171 (606)
T ss_dssp             SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTT
T ss_pred             hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChh
Confidence            89999999999999999988  477999999999999999988  57999999999999999984 55555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=5.5e-26  Score=246.43  Aligned_cols=282  Identities=14%  Similarity=0.095  Sum_probs=193.0

Q ss_pred             hhHHHHHhhccCcEEEEecCCCCcCCCC-CC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-Chh
Q 048810          199 LEKKMEETIRKDPIAISLPYRGDQVLPQ-RM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSS  275 (582)
Q Consensus       199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~  275 (582)
                      .+...|...+..++++++++|.+..++. .+ ++++|++|+++++  ....+.+..|.++++|++|++++|.++.+ |..
T Consensus        23 ~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  100 (606)
T 3t6q_A           23 GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC--QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA  100 (606)
T ss_dssp             CCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred             CcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCC--ccceeChhhccCccccCeeeCCCCcccccChhh
Confidence            4445555667789999999999987754 33 8999999999987  45556666678999999999999998774 678


Q ss_pred             hhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccc-hhhcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810          276 LDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLP-LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL  352 (582)
Q Consensus       276 i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L  352 (582)
                      ++.+++|++|++++|.++.  +..++++++|++|++++|.+..++ +.+..+++|++|++++ +.+..+++..++.+++|
T Consensus       101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L  179 (606)
T 3t6q_A          101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQA  179 (606)
T ss_dssp             TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTTC
T ss_pred             hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhccc
Confidence            9999999999999999888  577899999999999999888762 3344589999999998 46667766567888888


Q ss_pred             c--EEEcCCCccccccccC-------------------------------------------------------------
Q 048810          353 E--ELYMGNSFKRWEKVEG-------------------------------------------------------------  369 (582)
Q Consensus       353 ~--~L~l~~~~~~~~~~~~-------------------------------------------------------------  369 (582)
                      +  .|++++|.+.......                                                             
T Consensus       180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L  259 (606)
T 3t6q_A          180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI  259 (606)
T ss_dssp             CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred             ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence            8  7788777543220000                                                             


Q ss_pred             -----C-CccchhhccCCCCccEEEEEecccccCCccc-ccccccEEEEEeccc---cccccccccccccceecccceee
Q 048810          370 -----G-SNASLVELNGLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMFIGEA---RGRWFVKSETSRLMKLERLKSVS  439 (582)
Q Consensus       370 -----~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~~l~~l~l~~~~~~~  439 (582)
                           . .......++.+++|+.|++++|.+..+|..+ .+++|+.|++..+..   .+......+.++.+.+..+....
T Consensus       260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  339 (606)
T 3t6q_A          260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL  339 (606)
T ss_dssp             ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred             EeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence                 0 0001122667788888888888888887776 777888888766554   12234455566666665543221


Q ss_pred             hccccch-HHHhhhcccceeeccccCcccc--cccccCCCCCCCCcEEEEeec
Q 048810          440 ILLRNPG-MRMLLQRTEDLWLETLEGVPSV--VHELDDGEGFPRLKHLYVESC  489 (582)
Q Consensus       440 ~l~~~~~-i~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~  489 (582)
                      .+  +.. +.. +++|++|+++++......  +..   ++.+++|++|++++|
T Consensus       340 ~~--~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~---~~~l~~L~~L~l~~n  386 (606)
T 3t6q_A          340 EL--GTGCLEN-LENLRELDLSHDDIETSDCCNLQ---LRNLSHLQSLNLSYN  386 (606)
T ss_dssp             BC--CSSTTTT-CTTCCEEECCSSCCCEEEESTTT---TTTCTTCCEEECCSC
T ss_pred             cc--chhhhhc-cCcCCEEECCCCccccccCcchh---cccCCCCCEEECCCC
Confidence            10  222 222 366677777666533222  122   336666666666665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1.7e-26  Score=241.33  Aligned_cols=354  Identities=18%  Similarity=0.176  Sum_probs=248.9

Q ss_pred             hHHHHHhhccCcEEEEecCCCCcCCCC-CC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-Chhh
Q 048810          200 EKKMEETIRKDPIAISLPYRGDQVLPQ-RM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSL  276 (582)
Q Consensus       200 ~~~~~~~~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i  276 (582)
                      ++.+|. .+.++++|++++|.+..++. .+ .+++|++|+++++ .....++...|.++++|++|++++|.++.+ |..+
T Consensus        22 l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   99 (455)
T 3v47_A           22 LHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF   99 (455)
T ss_dssp             CSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred             cccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCC-cccceECcccccccccCCEEeCCCCccCccChhhc
Confidence            334443 55789999999999977643 33 8999999999987 344467777789999999999999999875 7789


Q ss_pred             hcccCccEEEcCCCCCCC--ccc--cCCCCCccEEEeeCCCCCcc-chh-hcCCCCCCEEcccccccccccCcccccCC-
Q 048810          277 DRLINLQTLCLDGCRLKD--IAK--VGQLKKLEVLSFRDSDIEQL-PLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKL-  349 (582)
Q Consensus       277 ~~L~~L~~L~L~~~~l~~--~~~--~~~l~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l-  349 (582)
                      +++++|++|++++|.+++  +..  ++.+++|++|++++|.+..+ |.. ++++++|++|++++| .+..+++..+..+ 
T Consensus       100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~  178 (455)
T 3v47_A          100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQ  178 (455)
T ss_dssp             TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGT
T ss_pred             cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccc
Confidence            999999999999999987  444  89999999999999999876 544 789999999999994 5555554446655 


Q ss_pred             -CcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccC-Cccc----ccccccEEEEEeccccccc---
Q 048810          350 -SRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEIL-PQDL----VSVELQRYKMFIGEARGRW---  420 (582)
Q Consensus       350 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~----~~~~L~~L~l~~~~~~~~~---  420 (582)
                       .+|+.|++++|.................+..+++|+.|++++|.+... +..+    ...+|+.|.+..+......   
T Consensus       179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  258 (455)
T 3v47_A          179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH  258 (455)
T ss_dssp             TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred             cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence             688999998886544311111111122344667899999998877532 2222    3367777777544321000   


Q ss_pred             ----------cc--cccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEee
Q 048810          421 ----------FV--KSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVES  488 (582)
Q Consensus       421 ----------~~--~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  488 (582)
                                ..  ....++.+.+..+......  +.++.. +++|+.|++++|......+..+   +.+++|++|++++
T Consensus       259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~  332 (455)
T 3v47_A          259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL--KSVFSH-FTDLEQLTLAQNEINKIDDNAF---WGLTHLLKLNLSQ  332 (455)
T ss_dssp             CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC--TTTTTT-CTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCS
T ss_pred             hhhccCcccccccccccCceEEEecCccccccc--hhhccc-CCCCCEEECCCCcccccChhHh---cCcccCCEEECCC
Confidence                      00  1134555666554333321  344444 4899999999888555444443   4889999999999


Q ss_pred             cCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceee
Q 048810          489 CSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVG  568 (582)
Q Consensus       489 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~  568 (582)
                      |. +..++..    ....+++|++|++++ ++++.+....   ...+++|++|++++| +++.+|+. .+..+++|++|+
T Consensus       333 N~-l~~~~~~----~~~~l~~L~~L~Ls~-N~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~  401 (455)
T 3v47_A          333 NF-LGSIDSR----MFENLDKLEVLDLSY-NHIRALGDQS---FLGLPNLKELALDTN-QLKSVPDG-IFDRLTSLQKIW  401 (455)
T ss_dssp             SC-CCEECGG----GGTTCTTCCEEECCS-SCCCEECTTT---TTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEE
T ss_pred             Cc-cCCcChh----HhcCcccCCEEECCC-CcccccChhh---ccccccccEEECCCC-ccccCCHh-HhccCCcccEEE
Confidence            84 4554322    356789999999998 4566654332   457899999999998 68888763 457899999999


Q ss_pred             eccCc
Q 048810          569 VEECD  573 (582)
Q Consensus       569 i~~C~  573 (582)
                      +++++
T Consensus       402 l~~N~  406 (455)
T 3v47_A          402 LHTNP  406 (455)
T ss_dssp             CCSSC
T ss_pred             ccCCC
Confidence            97654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=1e-25  Score=230.32  Aligned_cols=306  Identities=14%  Similarity=0.148  Sum_probs=211.0

Q ss_pred             CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCC
Q 048810          227 RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKK  303 (582)
Q Consensus       227 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~  303 (582)
                      ...+++++.|.+.++  ....+|..+|..+++|++|++++|.++.+| ..++.+++|++|++++|.++.  +..++.+++
T Consensus        41 ~~~l~~l~~l~l~~~--~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           41 DITLNNQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             SGGGCCCSEEEEESC--EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccccCCceEEEecCC--chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence            345677777877775  566677777777888888888888777755 367778888888888887777  355777888


Q ss_pred             ccEEEeeCCCCCccchhh-cCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCC
Q 048810          304 LEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLS  382 (582)
Q Consensus       304 L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~  382 (582)
                      |++|++++|.++.+|..+ +++++|++|++++ +.+..+++..++.+++|++|++++|.+...           .+..++
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~l~  186 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHV-----------DLSLIP  186 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBC-----------CGGGCT
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCcc-----------cccccc
Confidence            888888888887777764 6778888888877 456666655577778888888877765322           245566


Q ss_pred             CccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccc
Q 048810          383 KLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETL  462 (582)
Q Consensus       383 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~  462 (582)
                      +|+.|++++|.+..++   ...+|+.|+++.+............++.+.+..+.-. .   .+++.. +++|++|++++|
T Consensus       187 ~L~~L~l~~n~l~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-~---~~~l~~-l~~L~~L~Ls~n  258 (390)
T 3o6n_A          187 SLFHANVSYNLLSTLA---IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-D---TAWLLN-YPGLVEVDLSYN  258 (390)
T ss_dssp             TCSEEECCSSCCSEEE---CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC-C---CGGGGG-CTTCSEEECCSS
T ss_pred             ccceeecccccccccC---CCCcceEEECCCCeeeeccccccccccEEECCCCCCc-c---cHHHcC-CCCccEEECCCC
Confidence            7777777777655433   2345666666554431111122344555555554322 1   234444 489999999998


Q ss_pred             cCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEE
Q 048810          463 EGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIE  542 (582)
Q Consensus       463 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~  542 (582)
                      ......+..+   +.+++|++|++++| .++.++.     ....+|+|+.|+++++ +++.++..    .+.+++|+.|+
T Consensus       259 ~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~~L~  324 (390)
T 3o6n_A          259 ELEKIMYHPF---VKMQRLERLYISNN-RLVALNL-----YGQPIPTLKVLDLSHN-HLLHVERN----QPQFDRLENLY  324 (390)
T ss_dssp             CCCEEESGGG---TTCSSCCEEECCSS-CCCEEEC-----SSSCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSEEE
T ss_pred             cCCCcChhHc---cccccCCEEECCCC-cCcccCc-----ccCCCCCCCEEECCCC-cceecCcc----ccccCcCCEEE
Confidence            7555445444   48999999999998 4555542     2467899999999984 67766543    45789999999


Q ss_pred             EecccCcccccChhHHhhhhhcceeeeccCc
Q 048810          543 VEHCNKLKHLFSFSMAKNLLWLQKVGVEECD  573 (582)
Q Consensus       543 l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~  573 (582)
                      +++| .++.++    +..+++|++|++.+++
T Consensus       325 L~~N-~i~~~~----~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          325 LDHN-SIVTLK----LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred             CCCC-ccceeC----chhhccCCEEEcCCCC
Confidence            9998 477775    3678999999998865

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=1.8e-26  Score=250.53  Aligned_cols=307  Identities=11%  Similarity=0.077  Sum_probs=173.8

Q ss_pred             cChHHhcCCCCccEEEcCCCCCCC------------------CChhhh--cccCccEEEcCCCCCCC--ccccCCCCCcc
Q 048810          248 VSDHFFEGMEGLKVLQFPGIGSSS------------------LPSSLD--RLINLQTLCLDGCRLKD--IAKVGQLKKLE  305 (582)
Q Consensus       248 ~~~~~~~~l~~Lr~L~l~~~~~~~------------------lp~~i~--~L~~L~~L~L~~~~l~~--~~~~~~l~~L~  305 (582)
                      +|.. |+++++|++|++++|.++.                  +|..++  ++++|++|++++|.+..  |..++++++|+
T Consensus       198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            4443 4667777777777777766                  777766  77777777777776655  56677777777


Q ss_pred             EEEeeCCC-CC--ccchhhcCC------CCCCEEcccccccccccCc--ccccCCCcccEEEcCCCccccccccC-----
Q 048810          306 VLSFRDSD-IE--QLPLEIGQL------RRLQLLDLSNCWTLEVIAP--NVISKLSRLEELYMGNSFKRWEKVEG-----  369 (582)
Q Consensus       306 ~L~l~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~l~~lp~--~~l~~l~~L~~L~l~~~~~~~~~~~~-----  369 (582)
                      +|++++|+ ++  .+|..++++      ++|++|++++| .+..+|.  . ++.+++|++|++++|.+... ++.     
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~-ip~~~~l~  353 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLEGK-LPAFGSEI  353 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCEEE-CCCCEEEE
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcCccc-hhhhCCCC
Confidence            77777776 66  366666665      67777777663 4446665  3 66666777777666654421 000     


Q ss_pred             ----------CCccchhhccCCCC-ccEEEEEecccccCCccc---ccccccEEEEEecccc---ccccc-------ccc
Q 048810          370 ----------GSNASLVELNGLSK-LTTLEIHVRYAEILPQDL---VSVELQRYKMFIGEAR---GRWFV-------KSE  425 (582)
Q Consensus       370 ----------~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~---~~~~~-------~~~  425 (582)
                                .....+..+.++++ |+.|++++|.+..+|..+   .+++|+.|+++.+...   +....       ...
T Consensus       354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~  433 (636)
T 4eco_A          354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI  433 (636)
T ss_dssp             EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred             CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence                      00123445666777 777777777777777655   2336777777655441   12222       333


Q ss_pred             ccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccC-----CCCCCCCcEEEEeecCCceeeecccc
Q 048810          426 TSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDD-----GEGFPRLKHLYVESCSEILHIVGSVR  500 (582)
Q Consensus       426 ~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~l~~~~~~~~  500 (582)
                      .++.+.+..+.-...   |..+...+++|+.|++++|... .++.....     .+.+++|++|++++|. ++.++... 
T Consensus       434 ~L~~L~Ls~N~l~~l---p~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~-  507 (636)
T 4eco_A          434 NVSSINLSNNQISKF---PKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDF-  507 (636)
T ss_dssp             CEEEEECCSSCCCSC---CTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGG-
T ss_pred             CCCEEECcCCccCcC---CHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccChhh-
Confidence            556666665543333   5555554577888888777643 44433210     0122377777777763 44443220 


Q ss_pred             cccCCCCcccccccccccccccccccccccCcccCCCccEEEEeccc------CcccccChhHHhhhhhcceeeeccCc
Q 048810          501 RVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCN------KLKHLFSFSMAKNLLWLQKVGVEECD  573 (582)
Q Consensus       501 ~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~------~L~~l~~~~~~~~l~~L~~L~i~~C~  573 (582)
                        ....+++|+.|++++ ++++.+|..    ...+++|+.|++++|.      -...+|.  .+..+++|++|++++|.
T Consensus       508 --~~~~l~~L~~L~Ls~-N~l~~ip~~----~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~  577 (636)
T 4eco_A          508 --RATTLPYLVGIDLSY-NSFSKFPTQ----PLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQIGSND  577 (636)
T ss_dssp             --STTTCTTCCEEECCS-SCCSSCCCG----GGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSC
T ss_pred             --hhccCCCcCEEECCC-CCCCCcChh----hhcCCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEECCCCc
Confidence              112566777777766 344444332    3345566666664322      1223332  23455555555555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=8.6e-26  Score=227.22  Aligned_cols=305  Identities=15%  Similarity=0.129  Sum_probs=237.2

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT  284 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~  284 (582)
                      .....+++++++.++.+..++....+++|++|+++++  ....++.  |..+++|++|++++|.++.+| .+..+++|++
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n--~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~  114 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN--QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE  114 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred             chhcccccEEEEeCCccccchhhhhcCCccEEEccCC--ccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence            4456789999999999988887668999999999987  4455555  689999999999999998876 5889999999


Q ss_pred             EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      |++++|.+...+.+..+++|++|++++|.....+..+..+++|++|++++| .+..++.  ++.+++|++|++++|.+..
T Consensus       115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~  191 (347)
T 4fmz_A          115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED  191 (347)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred             EECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc
Confidence            999999998855589999999999999955544445899999999999984 5666665  7889999999999887543


Q ss_pred             ccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehcccc
Q 048810          365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRN  444 (582)
Q Consensus       365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~  444 (582)
                      .          ..+..+++|+.|++++|.+..++....+++|+.|+++.+.. .                    ..   +
T Consensus       192 ~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l-~--------------------~~---~  237 (347)
T 4fmz_A          192 I----------SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI-T--------------------DL---S  237 (347)
T ss_dssp             C----------GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-C--------------------CC---G
T ss_pred             c----------ccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc-C--------------------CC---c
Confidence            2          23788899999999999888776644778888888765543 0                    00   1


Q ss_pred             chHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccccccccccc
Q 048810          445 PGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETI  524 (582)
Q Consensus       445 ~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~  524 (582)
                      . +.. +++|++|++++|.. +..+ .   +..+++|++|++++| .+..++      ....+++|+.|++++| .+...
T Consensus       238 ~-~~~-l~~L~~L~l~~n~l-~~~~-~---~~~l~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L~L~~n-~l~~~  302 (347)
T 4fmz_A          238 P-LAN-LSQLTWLEIGTNQI-SDIN-A---VKDLTKLKMLNVGSN-QISDIS------VLNNLSQLNSLFLNNN-QLGNE  302 (347)
T ss_dssp             G-GTT-CTTCCEEECCSSCC-CCCG-G---GTTCTTCCEEECCSS-CCCCCG------GGGGCTTCSEEECCSS-CCCGG
T ss_pred             c-hhc-CCCCCEEECCCCcc-CCCh-h---HhcCCCcCEEEccCC-ccCCCh------hhcCCCCCCEEECcCC-cCCCc
Confidence            1 222 48999999999864 4332 2   458999999999998 344442      3567899999999996 45544


Q ss_pred             ccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810          525 CCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD  573 (582)
Q Consensus       525 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~  573 (582)
                      ....   .+.+++|+.|++++|+ ++.+++   +..+++|++|++++|+
T Consensus       303 ~~~~---l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          303 DMEV---IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             GHHH---HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             ChhH---hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence            3322   4578999999999995 777765   5789999999999986

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=3.4e-26  Score=252.72  Aligned_cols=304  Identities=12%  Similarity=0.078  Sum_probs=156.9

Q ss_pred             hcCCCCccEEEcCCCCCCC------------------CChhhh--cccCccEEEcCCCCCCC--ccccCCCCCccEEEee
Q 048810          253 FEGMEGLKVLQFPGIGSSS------------------LPSSLD--RLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFR  310 (582)
Q Consensus       253 ~~~l~~Lr~L~l~~~~~~~------------------lp~~i~--~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~  310 (582)
                      |.++++|++|+|++|.++.                  +|+.++  ++++|++|+|++|.+..  |..++++++|++|+++
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence            3556666666666666655                  666555  66666666666665544  5556666666666666


Q ss_pred             CCC-CCc--cchhhcCCC-------CCCEEcccccccccccCc-ccccCCCcccEEEcCCCccccccccC----------
Q 048810          311 DSD-IEQ--LPLEIGQLR-------RLQLLDLSNCWTLEVIAP-NVISKLSRLEELYMGNSFKRWEKVEG----------  369 (582)
Q Consensus       311 ~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~----------  369 (582)
                      +|+ ++.  +|..+++++       +|++|++++ +.+..+|. ..++.+++|+.|++++|.+...  +.          
T Consensus       524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l--p~~~~L~~L~~L  600 (876)
T 4ecn_A          524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDL  600 (876)
T ss_dssp             TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCCCBCCCHHHHTTCTTCCEEECTTSCCCBC--CCCCTTSEESEE
T ss_pred             CCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcCCccCChhhhhcCCCCCEEECCCCCcccc--hhhcCCCcceEE
Confidence            665 552  555544443       566666655 23445554 1255555566665555543311  00          


Q ss_pred             -----CCccchhhccCCCC-ccEEEEEecccccCCccc---ccccccEEEEEecccc---cccc---c--ccccccccee
Q 048810          370 -----GSNASLVELNGLSK-LTTLEIHVRYAEILPQDL---VSVELQRYKMFIGEAR---GRWF---V--KSETSRLMKL  432 (582)
Q Consensus       370 -----~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~---~~~~---~--~~~~l~~l~l  432 (582)
                           .....+..+.++++ |+.|++++|.+..+|..+   ..++|+.|+++.+...   +.+.   .  ....++.+.+
T Consensus       601 ~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L  680 (876)
T 4ecn_A          601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL  680 (876)
T ss_dssp             ECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred             ECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence                 00012334445555 555555555555555443   1123555555444331   0000   0  1123445555


Q ss_pred             cccceeehccccchHHHhhhcccceeeccccCcccccccccC-----CCCCCCCcEEEEeecCCceeeecccccccCCCC
Q 048810          433 ERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDD-----GEGFPRLKHLYVESCSEILHIVGSVRRVGCEVF  507 (582)
Q Consensus       433 ~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  507 (582)
                      ..+.-...   |.++...+++|+.|+|++|... .++..+..     .+.+++|++|+|++| .+..++...   ....+
T Consensus       681 s~N~L~~l---p~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l---~~~~l  752 (876)
T 4ecn_A          681 SYNEIQKF---PTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDF---RATTL  752 (876)
T ss_dssp             CSSCCCSC---CHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGG---STTTC
T ss_pred             cCCcCCcc---CHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC-CCccchHHh---hhccC
Confidence            54433333   5555544578888888877643 44443320     112347888888877 344444220   11367


Q ss_pred             cccccccccccccccccccccccCcccCCCccEEEEeccc------CcccccChhHHhhhhhcceeeeccCcc
Q 048810          508 PLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCN------KLKHLFSFSMAKNLLWLQKVGVEECDE  574 (582)
Q Consensus       508 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~------~L~~l~~~~~~~~l~~L~~L~i~~C~~  574 (582)
                      ++|+.|++++ ++++.+|..    ...+++|+.|++++|+      -...+|.  .+.++++|++|++++|.-
T Consensus       753 ~~L~~L~Ls~-N~L~~lp~~----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          753 PYLSNMDVSY-NCFSSFPTQ----PLNSSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             TTCCEEECCS-SCCSSCCCG----GGGCTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSCC
T ss_pred             CCcCEEEeCC-CCCCccchh----hhcCCCCCEEECCCCCCcccccccccChH--HHhcCCCCCEEECCCCCC
Confidence            7777777776 455555432    4456666776665532      1223332  345666666666666643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=5e-25  Score=238.84  Aligned_cols=352  Identities=13%  Similarity=0.133  Sum_probs=187.8

Q ss_pred             HhhccCcEEEEecCCCCcCC--CCCCCCCCccEEEeeccCccccccChHHhcCCCCcc--EEEcCCCCCCCCChhhhccc
Q 048810          205 ETIRKDPIAISLPYRGDQVL--PQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLK--VLQFPGIGSSSLPSSLDRLI  280 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr--~L~l~~~~~~~lp~~i~~L~  280 (582)
                      .....+++.+++++|.+..+  +....+++|+.|+++++  ....+++..|+.+++|+  .|++++|.++.++.......
T Consensus       125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~  202 (606)
T 3t6q_A          125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN--AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA  202 (606)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS--CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTC
T ss_pred             hccCCcccEEECCCCcccccCcccccCCcccCEEEcccC--cccccChhhhhhhcccceeEEecCCCccCccChhHhhhc
Confidence            44456777777777777655  44556778888888776  44455555566777776  66666666554332111110


Q ss_pred             ----------------------------------------------------CccEEEcCCCCCCC--ccccCCCCCccE
Q 048810          281 ----------------------------------------------------NLQTLCLDGCRLKD--IAKVGQLKKLEV  306 (582)
Q Consensus       281 ----------------------------------------------------~L~~L~L~~~~l~~--~~~~~~l~~L~~  306 (582)
                                                                          +|++|++++|.++.  +..++.+++|++
T Consensus       203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  282 (606)
T 3t6q_A          203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE  282 (606)
T ss_dssp             EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred             cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCE
Confidence                                                                34445555555544  233556666666


Q ss_pred             EEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccC----------------C
Q 048810          307 LSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEG----------------G  370 (582)
Q Consensus       307 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~----------------~  370 (582)
                      |++++|.++.+|..++.+++|++|++++| .+..+++..++.+++|++|++++|.........                .
T Consensus       283 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  361 (606)
T 3t6q_A          283 LDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD  361 (606)
T ss_dssp             EECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred             EeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence            66666666666666666666666666663 344443333556666666666655432110000                0


Q ss_pred             ---CccchhhccCCCCccEEEEEecccccCCcc-c-ccccccEEEEEecccc----ccccccccccccceecccceeehc
Q 048810          371 ---SNASLVELNGLSKLTTLEIHVRYAEILPQD-L-VSVELQRYKMFIGEAR----GRWFVKSETSRLMKLERLKSVSIL  441 (582)
Q Consensus       371 ---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~l  441 (582)
                         ....+..+..+++|+.|++++|.+...+.. + .+++|+.|++..+...    ..+....+.++.+.+..+......
T Consensus       362 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  441 (606)
T 3t6q_A          362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS  441 (606)
T ss_dssp             CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred             cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC
Confidence               000123344555555555555554433222 2 4455555555433320    111333444555555444222210


Q ss_pred             cccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccc
Q 048810          442 LRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANL  521 (582)
Q Consensus       442 ~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L  521 (582)
                        +.++.. +++|++|++++|............++.+++|++|++++|. +..++..    ....+++|+.|+++++ ++
T Consensus       442 --~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~Ls~N-~l  512 (606)
T 3t6q_A          442 --EQLFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQH----AFTSLKMMNHVDLSHN-RL  512 (606)
T ss_dssp             --TTTTTT-CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTT----TTTTCTTCCEEECCSS-CC
T ss_pred             --HHHHhC-CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChh----hhccccCCCEEECCCC-cc
Confidence              222332 3666666666665432111110113356777777777663 3333211    3456677778887773 45


Q ss_pred             cccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcc
Q 048810          522 ETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDE  574 (582)
Q Consensus       522 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~  574 (582)
                      +......   ...+++| .|++++| +++.+++ ..+..+++|+.|+++++|-
T Consensus       513 ~~~~~~~---l~~l~~L-~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          513 TSSSIEA---LSHLKGI-YLNLASN-HISIILP-SLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             CGGGGGG---GTTCCSC-EEECCSS-CCCCCCG-GGHHHHHTSSEEECTTCCE
T ss_pred             CcCChhH---hCccccc-EEECcCC-cccccCH-hhcccCCCCCEEeCCCCCc
Confidence            5443322   3467777 7888887 5666655 3567889999999988764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=3.3e-25  Score=231.99  Aligned_cols=320  Identities=16%  Similarity=0.163  Sum_probs=175.4

Q ss_pred             cCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcC
Q 048810          209 KDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLD  288 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~  288 (582)
                      .+++.+++.++.+..++....+++|+.|+++++  ....+++  +..+++|++|++++|.+..++. ++.+++|++|+++
T Consensus        46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n--~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~  120 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN--QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF  120 (466)
T ss_dssp             HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             ccccEEecCCCCCccCcchhhhcCCCEEECCCC--ccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence            455555565555555554445556666666554  2333333  4555566666666665555554 5555566666666


Q ss_pred             CCCCCCccccCCCCCccEEEeeCCCCCccch--------------------hhcCCCCCCEEcccccccccccCcccccC
Q 048810          289 GCRLKDIAKVGQLKKLEVLSFRDSDIEQLPL--------------------EIGQLRRLQLLDLSNCWTLEVIAPNVISK  348 (582)
Q Consensus       289 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~--------------------~i~~l~~L~~L~l~~~~~l~~lp~~~l~~  348 (582)
                      +|.++..+.+..+++|++|++++|.+..+|.                    .++++++|++|++++| .+..++.  +..
T Consensus       121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l~~  197 (466)
T 1o6v_A          121 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--LAK  197 (466)
T ss_dssp             SSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGG
T ss_pred             CCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh--hcc
Confidence            5555553335555556666665555554442                    1444555555555552 2344332  445


Q ss_pred             CCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc-ccccccccccc
Q 048810          349 LSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA-RGRWFVKSETS  427 (582)
Q Consensus       349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l  427 (582)
                      +++|++|++++|.+...          ..++.+++|+.|++++|.+..++....+++|+.|+++.+.. ........+.+
T Consensus       198 l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L  267 (466)
T 1o6v_A          198 LTNLESLIATNNQISDI----------TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKL  267 (466)
T ss_dssp             CTTCSEEECCSSCCCCC----------GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             CCCCCEEEecCCccccc----------ccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCC
Confidence            55555555555443221          12455666666666666665554333566666666655443 11113334445


Q ss_pred             ccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCC
Q 048810          428 RLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVF  507 (582)
Q Consensus       428 ~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  507 (582)
                      +.+.+..+.....   +. +.. +++|+.|++++|... ..+.    ++.+++|++|++++|. +..++      ....+
T Consensus       268 ~~L~l~~n~l~~~---~~-~~~-l~~L~~L~L~~n~l~-~~~~----~~~l~~L~~L~L~~n~-l~~~~------~~~~l  330 (466)
T 1o6v_A          268 TELKLGANQISNI---SP-LAG-LTALTNLELNENQLE-DISP----ISNLKNLTYLTLYFNN-ISDIS------PVSSL  330 (466)
T ss_dssp             SEEECCSSCCCCC---GG-GTT-CTTCSEEECCSSCCS-CCGG----GGGCTTCSEEECCSSC-CSCCG------GGGGC
T ss_pred             CEEECCCCccCcc---cc-ccC-CCccCeEEcCCCccc-Cchh----hcCCCCCCEEECcCCc-CCCch------hhccC
Confidence            5555554432222   22 222 367777777766532 2222    3367777777777773 32221      24567


Q ss_pred             cccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810          508 PLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD  573 (582)
Q Consensus       508 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~  573 (582)
                      ++|+.|+++++ +++.++     ....+++|+.|++++| ++..+++   +..+++|++|++.+|+
T Consensus       331 ~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          331 TKLQRLFFYNN-KVSDVS-----SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA  386 (466)
T ss_dssp             TTCCEEECCSS-CCCCCG-----GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred             ccCCEeECCCC-ccCCch-----hhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence            78888888774 455542     2557788888888888 4555553   4678888888888875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=8.5e-26  Score=249.53  Aligned_cols=335  Identities=13%  Similarity=0.065  Sum_probs=212.1

Q ss_pred             HhhccCcEEEEecCCCCcC------------------CCCCC---CCCCccEEEeeccCccccccChHHhcCCCCccEEE
Q 048810          205 ETIRKDPIAISLPYRGDQV------------------LPQRM---RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQ  263 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~  263 (582)
                      .....+++.|++++|.+..                  +|..+   .+++|+.|++++| .....+|.. |.++++|++|+
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~-l~~L~~L~~L~  521 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-PNMTQLPDF-LYDLPELQSLN  521 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-TTCCSCCGG-GGGCSSCCEEE
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-CCCccChHH-HhCCCCCCEEE
Confidence            5567889999999999977                  88876   5999999999988 456667754 58899999999


Q ss_pred             cCCCC-CCC--CChhhhccc-------CccEEEcCCCCCCC-cc--ccCCCCCccEEEeeCCCCCccchhhcCCCCCCEE
Q 048810          264 FPGIG-SSS--LPSSLDRLI-------NLQTLCLDGCRLKD-IA--KVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLL  330 (582)
Q Consensus       264 l~~~~-~~~--lp~~i~~L~-------~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L  330 (582)
                      +++|. ++.  +|..++.+.       +|++|++++|.++. |.  .++++++|++|++++|.+..+| .++.+++|++|
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L  600 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDL  600 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEE
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEE
Confidence            99998 875  888888877       99999999999888 66  7999999999999999999898 78999999999


Q ss_pred             cccccccccccCcccccCCCc-ccEEEcCCCccccccccCCCccchhhccCCC--CccEEEEEecccccCCcc----c--
Q 048810          331 DLSNCWTLEVIAPNVISKLSR-LEELYMGNSFKRWEKVEGGSNASLVELNGLS--KLTTLEIHVRYAEILPQD----L--  401 (582)
Q Consensus       331 ~l~~~~~l~~lp~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~----~--  401 (582)
                      ++++| .+..+|.. +..+++ |+.|++++|.+..         .+..+..+.  +|+.|++++|.+...++.    +  
T Consensus       601 ~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~---------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~  669 (876)
T 4ecn_A          601 KLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLKY---------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD  669 (876)
T ss_dssp             ECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCCS---------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred             ECcCC-ccccchHH-HhhccccCCEEECcCCCCCc---------CchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence            99994 56688876 788888 9999999987642         223333333  366666666655432211    1  


Q ss_pred             -ccccccEEEEEecccc--ccc-cccccccccceecccceeehccccchHHHh-------hhcccceeeccccCcccccc
Q 048810          402 -VSVELQRYKMFIGEAR--GRW-FVKSETSRLMKLERLKSVSILLRNPGMRML-------LQRTEDLWLETLEGVPSVVH  470 (582)
Q Consensus       402 -~~~~L~~L~l~~~~~~--~~~-~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~-------~~~L~~L~L~~~~~~~~~~~  470 (582)
                       ...+|+.|+++.+...  +.. ....+.++.+.+..+.-...   |.++...       +++|+.|+|++|.. +.++.
T Consensus       670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i---p~~~~~~~~~~l~nl~~L~~L~Ls~N~L-~~lp~  745 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI---PENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSD  745 (876)
T ss_dssp             CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC---CTTSSSCTTSCCTTGGGCCEEECCSSCC-CCCCG
T ss_pred             ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc---ChHHhccccccccccCCccEEECCCCCC-ccchH
Confidence             2335555555544431  111 11234445555544322222   3322211       12666666666643 24443


Q ss_pred             cccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccc-----c-ccccccccccCcccCCCccEEEEe
Q 048810          471 ELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLA-----N-LETICCSQLREDQSFSNLRIIEVE  544 (582)
Q Consensus       471 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~-L~~~~~~~~~~~~~~~~L~~L~l~  544 (582)
                      .+. ...+++|+.|+|++|. +..++.     ....+++|+.|++++++     + ...+|.    ..+.+++|+.|+++
T Consensus       746 ~l~-~~~l~~L~~L~Ls~N~-L~~lp~-----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~----~l~~L~~L~~L~Ls  814 (876)
T 4ecn_A          746 DFR-ATTLPYLSNMDVSYNC-FSSFPT-----QPLNSSQLKAFGIRHQRDAEGNRILRQWPT----GITTCPSLIQLQIG  814 (876)
T ss_dssp             GGS-TTTCTTCCEEECCSSC-CSSCCC-----GGGGCTTCCEEECCCCBCTTCCBCCCCCCT----TGGGCSSCCEEECC
T ss_pred             Hhh-hccCCCcCEEEeCCCC-CCccch-----hhhcCCCCCEEECCCCCCcccccccccChH----HHhcCCCCCEEECC
Confidence            321 1256666666666653 222321     23455666666665422     1 112221    13456666666666


Q ss_pred             cccCcccccChhHHhhhhhcceeeeccCc
Q 048810          545 HCNKLKHLFSFSMAKNLLWLQKVGVEECD  573 (582)
Q Consensus       545 ~c~~L~~l~~~~~~~~l~~L~~L~i~~C~  573 (582)
                      +| ++..+|..    -.++|+.|+|++|+
T Consensus       815 ~N-~L~~Ip~~----l~~~L~~LdLs~N~  838 (876)
T 4ecn_A          815 SN-DIRKVDEK----LTPQLYILDIADNP  838 (876)
T ss_dssp             SS-CCCBCCSC----CCSSSCEEECCSCT
T ss_pred             CC-CCCccCHh----hcCCCCEEECCCCC
Confidence            66 34555542    22466666666664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=5.3e-25  Score=231.39  Aligned_cols=192  Identities=20%  Similarity=0.163  Sum_probs=128.6

Q ss_pred             EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCC
Q 048810          212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGC  290 (582)
Q Consensus       212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~  290 (582)
                      +.++.+++.+..+|... .++++.|+++++  ....++...|..+++|++|++++|.++.+ |..++++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKN--RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCSSCCSCC-CTTCSEEECCSS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCcCCCCC-CCCCcEEECCCC--ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            34556666666666544 356777777776  44455555567777777777777777664 566777777777777777


Q ss_pred             CCCC-c-cccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810          291 RLKD-I-AKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV  367 (582)
Q Consensus       291 ~l~~-~-~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (582)
                      .++. + ..+.++++|++|++++|.+..+ |..+..+++|++|++++ +.+..+++..++.+++|++|++++|.+...  
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--  167 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTSI--  167 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSSC--
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCccc--
Confidence            7776 3 3467777777777777777754 44567777777777777 455555555577777777777777755433  


Q ss_pred             cCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEecc
Q 048810          368 EGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGE  415 (582)
Q Consensus       368 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~  415 (582)
                            ....+.++++|+.|++++|.+..++...  .+++|+.|++..+.
T Consensus       168 ------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          168 ------PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             ------CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred             ------ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence                  2345677777777777777776655432  66677777776543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=1.2e-25  Score=249.51  Aligned_cols=344  Identities=19%  Similarity=0.141  Sum_probs=184.3

Q ss_pred             ccCcEEEEecCCCCc-CCCCCC-C-CCCccEEEeeccC-----------------------ccccccChHHhcCCCCccE
Q 048810          208 RKDPIAISLPYRGDQ-VLPQRM-R-CPRLGLFLLHTIG-----------------------LCSIQVSDHFFEGMEGLKV  261 (582)
Q Consensus       208 ~~~~~~l~l~~~~~~-~l~~~~-~-~~~L~~L~l~~~~-----------------------~~~~~~~~~~~~~l~~Lr~  261 (582)
                      ..+++++++++|.+. .+|... . +++|+.|+++++.                       .....+|...|..+++|++
T Consensus       268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~  347 (768)
T 3rgz_A          268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV  347 (768)
T ss_dssp             CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred             cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence            445666666666553 444433 2 3555555555540                       1222344443444445555


Q ss_pred             EEcCCCCCC-CCChhhhccc-CccEEEcCCCCCCC--ccccCC--CCCccEEEeeCCCCC-ccchhhcCCCCCCEEcccc
Q 048810          262 LQFPGIGSS-SLPSSLDRLI-NLQTLCLDGCRLKD--IAKVGQ--LKKLEVLSFRDSDIE-QLPLEIGQLRRLQLLDLSN  334 (582)
Q Consensus       262 L~l~~~~~~-~lp~~i~~L~-~L~~L~L~~~~l~~--~~~~~~--l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~  334 (582)
                      |++++|.++ .+|..+..+. +|++|++++|.+.+  |..+..  +++|++|++++|.+. .+|..++++++|++|++++
T Consensus       348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  427 (768)
T 3rgz_A          348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF  427 (768)
T ss_dssp             EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred             EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence            555554443 3444444444 45555555554443  333333  455666666666555 4555666666666666666


Q ss_pred             cccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc-cCCccc-ccccccEEEEE
Q 048810          335 CWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE-ILPQDL-VSVELQRYKMF  412 (582)
Q Consensus       335 ~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~  412 (582)
                      |...+.+|.. ++.+++|+.|++++|.+...        .+..+..+++|+.|++++|.+. .+|..+ .+++|+.|+++
T Consensus       428 N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~--------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  498 (768)
T 3rgz_A          428 NYLSGTIPSS-LGSLSKLRDLKLWLNMLEGE--------IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS  498 (768)
T ss_dssp             SEEESCCCGG-GGGCTTCCEEECCSSCCCSC--------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CcccCcccHH-HhcCCCCCEEECCCCcccCc--------CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence            4332334433 56666666666666654433        3455666666666666666665 344444 56666666665


Q ss_pred             eccc---cccccccccccccceecccceeehccccchHHHhhhcccceeeccccCccccccccc----------------
Q 048810          413 IGEA---RGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELD----------------  473 (582)
Q Consensus       413 ~~~~---~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~----------------  473 (582)
                      .+..   .+.+....+.++.+.+..+.....+  |..+..+ ++|+.|++++|.....+|..+.                
T Consensus       499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~  575 (768)
T 3rgz_A          499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY  575 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred             CCccCCcCChHHhcCCCCCEEECCCCcccCcC--CHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence            5543   2344555556666666555433221  4444443 6666666666553322222110                


Q ss_pred             ---------------------------------------------------CCCCCCCCcEEEEeecCCceeeecccccc
Q 048810          474 ---------------------------------------------------DGEGFPRLKHLYVESCSEILHIVGSVRRV  502 (582)
Q Consensus       474 ---------------------------------------------------~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  502 (582)
                                                                         .++.+++|++|++++|.-...+|.     
T Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-----  650 (768)
T 3rgz_A          576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-----  650 (768)
T ss_dssp             EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-----
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH-----
Confidence                                                               022345666677766643223332     


Q ss_pred             cCCCCccccccccccccccc-ccccccccCcccCCCccEEEEecccCcc-cccChhHHhhhhhcceeeeccCcchH
Q 048810          503 GCEVFPLLETLYLIGLANLE-TICCSQLREDQSFSNLRIIEVEHCNKLK-HLFSFSMAKNLLWLQKVGVEECDELK  576 (582)
Q Consensus       503 ~~~~~~~L~~L~l~~~~~L~-~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~i~~C~~L~  576 (582)
                      ..+.++.|+.|++++ ++++ .+|..    .+.+++|+.|++++|. +. .+|.  .+..+++|++|++++++--.
T Consensus       651 ~l~~l~~L~~L~Ls~-N~l~g~ip~~----l~~L~~L~~LdLs~N~-l~g~ip~--~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          651 EIGSMPYLFILNLGH-NDISGSIPDE----VGDLRGLNILDLSSNK-LDGRIPQ--AMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             GGGGCTTCCEEECCS-SCCCSCCCGG----GGGCTTCCEEECCSSC-CEECCCG--GGGGCCCCSEEECCSSEEEE
T ss_pred             HHhccccCCEEeCcC-CccCCCCChH----HhCCCCCCEEECCCCc-ccCcCCh--HHhCCCCCCEEECcCCcccc
Confidence            245667777777776 3444 34332    5677788888888873 44 4542  45778888888888775433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.1e-25  Score=242.19  Aligned_cols=161  Identities=21%  Similarity=0.231  Sum_probs=130.4

Q ss_pred             hhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hh
Q 048810          199 LEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SS  275 (582)
Q Consensus       199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~  275 (582)
                      .+..+|...+..+++|++++|.+..++..  ..+++|++|+++++  ....+++..|.++++|++|++++|.++.+| ..
T Consensus        18 ~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (570)
T 2z63_A           18 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (570)
T ss_dssp             CCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             CccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCC--cCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence            34445555567899999999999877643  38999999999987  566677777899999999999999998865 68


Q ss_pred             hhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCc--cchhhcCCCCCCEEcccccccccccCcccccCCCc
Q 048810          276 LDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQ--LPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSR  351 (582)
Q Consensus       276 i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~  351 (582)
                      ++.+++|++|++++|.++. + ..++++++|++|++++|.+..  +|..++++++|++|++++ +.+..+++..++.+++
T Consensus        96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~  174 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQ  174 (570)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEECGGGGHHHHT
T ss_pred             hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC-CccceecHHHccchhc
Confidence            9999999999999999988 3 369999999999999998885  789999999999999998 4566666555666666


Q ss_pred             c----cEEEcCCCcc
Q 048810          352 L----EELYMGNSFK  362 (582)
Q Consensus       352 L----~~L~l~~~~~  362 (582)
                      |    +.|++++|.+
T Consensus       175 L~~~~~~L~l~~n~l  189 (570)
T 2z63_A          175 MPLLNLSLDLSLNPM  189 (570)
T ss_dssp             CTTCCCEEECTTCCC
T ss_pred             cchhhhhcccCCCCc
Confidence            6    6677666643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.6e-25  Score=238.80  Aligned_cols=306  Identities=14%  Similarity=0.150  Sum_probs=210.2

Q ss_pred             CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCc
Q 048810          228 MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKL  304 (582)
Q Consensus       228 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L  304 (582)
                      ..+++++.+.+.++  ....+|..+|..+++|++|++++|.++.+| ..++.+++|++|++++|.++.  +..++.+++|
T Consensus        48 l~l~~l~~l~l~~~--~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           48 ITLNNQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GGGCCCSEEEESSC--EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCCCceEEEeeCC--CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            35667777777765  566677777777888888888888777754 377778888888888887777  3456778888


Q ss_pred             cEEEeeCCCCCccchhh-cCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCC
Q 048810          305 EVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSK  383 (582)
Q Consensus       305 ~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~  383 (582)
                      ++|++++|.++.+|..+ +++++|++|++++| .+..+++..++.+++|++|++++|.+...           .++.+++
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~l~~  193 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV-----------DLSLIPS  193 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC-----------CGGGCTT
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc-----------Chhhhhh
Confidence            88888888777777764 77788888888774 56666655577788888888877765332           2455667


Q ss_pred             ccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeecccc
Q 048810          384 LTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLE  463 (582)
Q Consensus       384 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~  463 (582)
                      |+.|++++|.+..++   ...+|+.|+++.+....-.......++.+.+..+.. ..   +.++.. +++|+.|++++|.
T Consensus       194 L~~L~l~~n~l~~l~---~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l-~~---~~~l~~-l~~L~~L~Ls~N~  265 (597)
T 3oja_B          194 LFHANVSYNLLSTLA---IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TD---TAWLLN-YPGLVEVDLSYNE  265 (597)
T ss_dssp             CSEEECCSSCCSEEE---CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC-CC---CGGGGG-CTTCSEEECCSSC
T ss_pred             hhhhhcccCcccccc---CCchhheeeccCCcccccccccCCCCCEEECCCCCC-CC---Chhhcc-CCCCCEEECCCCc
Confidence            777777777665433   234566666655443111111223455555555432 22   344554 4899999999988


Q ss_pred             CcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEE
Q 048810          464 GVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEV  543 (582)
Q Consensus       464 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l  543 (582)
                      .....+..+   +.+++|++|+|++| .+..++.     ....+|+|+.|++++ +.+..+|..    .+.+++|+.|++
T Consensus       266 l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~-----~~~~l~~L~~L~Ls~-N~l~~i~~~----~~~l~~L~~L~L  331 (597)
T 3oja_B          266 LEKIMYHPF---VKMQRLERLYISNN-RLVALNL-----YGQPIPTLKVLDLSH-NHLLHVERN----QPQFDRLENLYL  331 (597)
T ss_dssp             CCEEESGGG---TTCSSCCEEECTTS-CCCEEEC-----SSSCCTTCCEEECCS-SCCCCCGGG----HHHHTTCSEEEC
T ss_pred             cCCCCHHHh---cCccCCCEEECCCC-CCCCCCc-----ccccCCCCcEEECCC-CCCCccCcc----cccCCCCCEEEC
Confidence            655555554   48999999999987 4555542     246689999999998 466666543    457899999999


Q ss_pred             ecccCcccccChhHHhhhhhcceeeeccCcc
Q 048810          544 EHCNKLKHLFSFSMAKNLLWLQKVGVEECDE  574 (582)
Q Consensus       544 ~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~  574 (582)
                      ++| .+..++    +..+++|+.|++.+++-
T Consensus       332 ~~N-~l~~~~----~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          332 DHN-SIVTLK----LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             CSS-CCCCCC----CCTTCCCSEEECCSSCE
T ss_pred             CCC-CCCCcC----hhhcCCCCEEEeeCCCC
Confidence            998 577765    36789999999988763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=2.4e-25  Score=238.39  Aligned_cols=356  Identities=14%  Similarity=0.146  Sum_probs=210.8

Q ss_pred             hHHHHHhhccCcEEEEecCCCCcCCCC-C-CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh-h
Q 048810          200 EKKMEETIRKDPIAISLPYRGDQVLPQ-R-MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-L  276 (582)
Q Consensus       200 ~~~~~~~~~~~~~~l~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i  276 (582)
                      +...|......++++++++|.+..++. . ..+++|++|+++++  ....+++..|..+++|++|++++|.++.+|.. +
T Consensus        17 l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   94 (549)
T 2z81_A           17 FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS--RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF   94 (549)
T ss_dssp             CSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred             cccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCC--CcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence            333443345678888888888876643 2 37888888888887  45556656668888888888888888887654 8


Q ss_pred             hcccCccEEEcCCCCCCC---ccccCCCCCccEEEeeCCC-CCccc-hhhcCCCCCCEEcccccccccccCcccccCCCc
Q 048810          277 DRLINLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSD-IEQLP-LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSR  351 (582)
Q Consensus       277 ~~L~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~  351 (582)
                      +.+++|++|++++|.++.   +..++++++|++|++++|. +..+| ..++.+++|++|++++|...+..|.. ++.+++
T Consensus        95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~  173 (549)
T 2z81_A           95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRD  173 (549)
T ss_dssp             TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSE
T ss_pred             ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhcccc
Confidence            888888888888888774   4668888888888888886 56666 45778888888888874332223332 555544


Q ss_pred             ------------------------ccEEEcCCCccccccccCCC-c----------------------cchhhcc-----
Q 048810          352 ------------------------LEELYMGNSFKRWEKVEGGS-N----------------------ASLVELN-----  379 (582)
Q Consensus       352 ------------------------L~~L~l~~~~~~~~~~~~~~-~----------------------~~~~~l~-----  379 (582)
                                              |++|++++|.+......... .                      .....+.     
T Consensus       174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L  253 (549)
T 2z81_A          174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL  253 (549)
T ss_dssp             EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred             CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence                                    44454444433221000000 0                      0000000     


Q ss_pred             ------------------------------------------------------CCCCccEEEEEecccccCCccc--cc
Q 048810          380 ------------------------------------------------------GLSKLTTLEIHVRYAEILPQDL--VS  403 (582)
Q Consensus       380 ------------------------------------------------------~l~~L~~L~l~~~~~~~~~~~~--~~  403 (582)
                                                                            ...+|+.|++++|.+..+|..+  .+
T Consensus       254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l  333 (549)
T 2z81_A          254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL  333 (549)
T ss_dssp             CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred             cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence                                                                  0123444444444444455443  35


Q ss_pred             ccccEEEEEeccccc------cccccccccccceecccceeehccccc--hHHHhhhcccceeeccccCcccccccccCC
Q 048810          404 VELQRYKMFIGEARG------RWFVKSETSRLMKLERLKSVSILLRNP--GMRMLLQRTEDLWLETLEGVPSVVHELDDG  475 (582)
Q Consensus       404 ~~L~~L~l~~~~~~~------~~~~~~~~l~~l~l~~~~~~~~l~~~~--~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~  475 (582)
                      ++|+.|+++.+....      ......+.++.+.+..+.-...   +.  .....+++|+.|++++|. ++.++..+   
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~---  406 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM---QKTGEILLTLKNLTSLDISRNT-FHPMPDSC---  406 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCH---HHHHHHGGGCTTCCEEECTTCC-CCCCCSCC---
T ss_pred             ccccEEEccCCccccccccchhhhhccccCcEEEccCCccccc---ccchhhhhcCCCCCEEECCCCC-CccCChhh---
Confidence            666666665544311      1123345555555555432211   11  111224778888888775 34454443   


Q ss_pred             CCCCCCcEEEEeecCCceeeecccc-------------cccCCCCcccccccccccccccccccccccCcccCCCccEEE
Q 048810          476 EGFPRLKHLYVESCSEILHIVGSVR-------------RVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIE  542 (582)
Q Consensus       476 ~~l~~L~~L~l~~~~~l~~~~~~~~-------------~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~  542 (582)
                      +.+++|++|++++|. ++.+++...             ......+++|+.|++++ ++++.+|.     ...+++|+.|+
T Consensus       407 ~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~-N~l~~ip~-----~~~l~~L~~L~  479 (549)
T 2z81_A          407 QWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR-NKLKTLPD-----ASLFPVLLVMK  479 (549)
T ss_dssp             CCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS-SCCSSCCC-----GGGCTTCCEEE
T ss_pred             cccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCC-CccCcCCC-----cccCccCCEEe
Confidence            367777777777764 333322100             00113567777777777 45665553     34578888888


Q ss_pred             EecccCcccccChhHHhhhhhcceeeeccCcc
Q 048810          543 VEHCNKLKHLFSFSMAKNLLWLQKVGVEECDE  574 (582)
Q Consensus       543 l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~  574 (582)
                      +++| +++.+++ ..+..+++|+.|++.+|+-
T Consensus       480 Ls~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          480 ISRN-QLKSVPD-GIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             CCSS-CCCCCCT-TGGGGCTTCCEEECCSSCB
T ss_pred             cCCC-ccCCcCH-HHHhcCcccCEEEecCCCc
Confidence            8887 6777765 3457888899999877663

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=1.3e-25  Score=249.34  Aligned_cols=342  Identities=16%  Similarity=0.089  Sum_probs=167.5

Q ss_pred             cCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-CChhhhcccCccEEEc
Q 048810          209 KDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLDRLINLQTLCL  287 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~L~~L~L  287 (582)
                      .+++++++++|.+........+++|++|+++++ .....+|.  +..+++|++|++++|.++. +|..++.+++|++|++
T Consensus       178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  254 (768)
T 3rgz_A          178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSN-NFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI  254 (768)
T ss_dssp             TTCCEEECCSSEEESCCBCTTCTTCCEEECCSS-CCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred             CCCCEEECCCCcccccCCcccCCcCCEEECcCC-cCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence            344444444444433333334555555555554 22222222  3555555555555555543 4455555555555555


Q ss_pred             CCCCCCC-ccccCCCCCccEEEeeCCCCC-ccchhhcCC-CCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          288 DGCRLKD-IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQL-RRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       288 ~~~~l~~-~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      ++|.+.+ ++.. .+++|++|++++|.+. .+|..+..+ ++|++|++++|...+.+|.. ++.+++|++|++++|.+..
T Consensus       255 s~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~  332 (768)
T 3rgz_A          255 SSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSG  332 (768)
T ss_dssp             CSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEE
T ss_pred             CCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccC
Confidence            5555544 2222 4555555555555554 555555543 66666666664333344443 5666666666666665432


Q ss_pred             ccccCCCccchhh-ccCCCCccEEEEEecccc-cCCccc-ccc-cccEEEEEeccc---ccccccc--ccccccceeccc
Q 048810          365 EKVEGGSNASLVE-LNGLSKLTTLEIHVRYAE-ILPQDL-VSV-ELQRYKMFIGEA---RGRWFVK--SETSRLMKLERL  435 (582)
Q Consensus       365 ~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~-~~~~~~-~~~-~L~~L~l~~~~~---~~~~~~~--~~~l~~l~l~~~  435 (582)
                      .        .+.. ++++++|+.|++++|.+. .+|..+ .+. +|+.|+++.+..   .+.+...  .+.++.+.+..+
T Consensus       333 ~--------ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n  404 (768)
T 3rgz_A          333 E--------LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN  404 (768)
T ss_dssp             E--------CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS
T ss_pred             c--------CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC
Confidence            2        2322 666777777777766665 455544 343 566666554332   1111111  333444444443


Q ss_pred             ceeehccccchHHHhhhcccceeeccccCccccccccc---------------------CCCCCCCCcEEEEeecCCcee
Q 048810          436 KSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELD---------------------DGEGFPRLKHLYVESCSEILH  494 (582)
Q Consensus       436 ~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~---------------------~~~~l~~L~~L~l~~~~~l~~  494 (582)
                      .....+  |.++..+ ++|+.|++++|......+..+.                     .++.+++|++|++++|.-...
T Consensus       405 ~l~~~~--p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  481 (768)
T 3rgz_A          405 GFTGKI--PPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE  481 (768)
T ss_dssp             EEEEEC--CGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred             cccccc--CHHHhcC-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence            322111  3333332 4555555555443323333222                     011444555555554432212


Q ss_pred             eecccccccCCCCccccccccccccccc-ccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810          495 IVGSVRRVGCEVFPLLETLYLIGLANLE-TICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD  573 (582)
Q Consensus       495 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~-~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~  573 (582)
                      ++.     ....+++|+.|+++++. +. .+|..    .+.+++|+.|++++|.-...+|.  .+..+++|+.|++.+|+
T Consensus       482 ~p~-----~l~~l~~L~~L~L~~N~-l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          482 IPS-----GLSNCTNLNWISLSNNR-LTGEIPKW----IGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             CCG-----GGGGCTTCCEEECCSSC-CCSCCCGG----GGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSE
T ss_pred             CCH-----HHhcCCCCCEEEccCCc-cCCcCChH----HhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCc
Confidence            111     23455666666666633 32 33321    45677777777777743334543  45677777777777776


Q ss_pred             chHHH
Q 048810          574 ELKMI  578 (582)
Q Consensus       574 ~L~~i  578 (582)
                      -...|
T Consensus       550 l~g~i  554 (768)
T 3rgz_A          550 FNGTI  554 (768)
T ss_dssp             EESBC
T ss_pred             cCCcC
Confidence            44333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=1.6e-25  Score=242.97  Aligned_cols=154  Identities=14%  Similarity=0.158  Sum_probs=118.2

Q ss_pred             HhhccCcEEEEecCCCCcC------------------CCCCCC---CCCccEEEeeccCccccccChHHhcCCCCccEEE
Q 048810          205 ETIRKDPIAISLPYRGDQV------------------LPQRMR---CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQ  263 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~------------------l~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~  263 (582)
                      .....+++.|++++|.+..                  +|..+.   +++|+.|++++| .....+|.. |.++++|++|+
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~  279 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTF-LKALPEMQLIN  279 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTT-TTTCSSCCEEE
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHH-HhcCCCCCEEE
Confidence            4556788888888888876                  777654   888888888887 445566654 47888888888


Q ss_pred             cCCCC-CCC--CChhhhcc------cCccEEEcCCCCCCC-cc--ccCCCCCccEEEeeCCCCC-ccchhhcCCCCCCEE
Q 048810          264 FPGIG-SSS--LPSSLDRL------INLQTLCLDGCRLKD-IA--KVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQLL  330 (582)
Q Consensus       264 l~~~~-~~~--lp~~i~~L------~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L  330 (582)
                      +++|. ++.  +|..++.+      ++|++|++++|.++. |.  .++++++|++|++++|.+. .+| .++.+++|++|
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L  358 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL  358 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence            88887 764  78878776      888888888888877 55  6888888888888888888 777 77778888888


Q ss_pred             cccccccccccCcccccCCCc-ccEEEcCCCccc
Q 048810          331 DLSNCWTLEVIAPNVISKLSR-LEELYMGNSFKR  363 (582)
Q Consensus       331 ~l~~~~~l~~lp~~~l~~l~~-L~~L~l~~~~~~  363 (582)
                      ++++ +.+..+|.. ++.+++ |++|++++|.+.
T Consensus       359 ~L~~-N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          359 NLAY-NQITEIPAN-FCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             ECCS-SEEEECCTT-SEEECTTCCEEECCSSCCS
T ss_pred             ECCC-CccccccHh-hhhhcccCcEEEccCCcCc
Confidence            8887 456677765 677777 888888777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=231.48  Aligned_cols=106  Identities=16%  Similarity=0.033  Sum_probs=62.4

Q ss_pred             hcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCC-ccccccccccccccccccccccc
Q 048810          452 QRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVF-PLLETLYLIGLANLETICCSQLR  530 (582)
Q Consensus       452 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~  530 (582)
                      ++|+.|++++|......+...  ...+++|++|++++|.-...+        ...+ ++|+.|++++ .+++.+|..   
T Consensus       374 ~~L~~L~Ls~N~l~~~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--------~~~l~~~L~~L~Ls~-N~l~~ip~~---  439 (520)
T 2z7x_B          374 KSLQQLDISQNSVSYDEKKGD--CSWTKSLLSLNMSSNILTDTI--------FRCLPPRIKVLDLHS-NKIKSIPKQ---  439 (520)
T ss_dssp             TTCCEEECCSSCCBCCGGGCS--CCCCTTCCEEECCSSCCCGGG--------GGSCCTTCCEEECCS-SCCCCCCGG---
T ss_pred             CCCCEEECCCCcCCcccccch--hccCccCCEEECcCCCCCcch--------hhhhcccCCEEECCC-Ccccccchh---
Confidence            455555555554333232221  224555555555555311111        1112 5788888877 356666543   


Q ss_pred             CcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcc
Q 048810          531 EDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDE  574 (582)
Q Consensus       531 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~  574 (582)
                       ...+++|++|++++| +++.+|.. .+..+++|++|++.+++-
T Consensus       440 -~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          440 -VVKLEALQELNVASN-QLKSVPDG-IFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             -GGGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCB
T ss_pred             -hhcCCCCCEEECCCC-cCCccCHH-HhccCCcccEEECcCCCC
Confidence             346888999999888 67888763 357788899998887753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=3.2e-25  Score=237.50  Aligned_cols=149  Identities=18%  Similarity=0.136  Sum_probs=128.9

Q ss_pred             EEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCC
Q 048810          214 ISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRL  292 (582)
Q Consensus       214 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l  292 (582)
                      .+.+++.+..+|.... ++|++|+++++  ....+++..|.++++|++|++++|.++.++ ..++.+++|++|++++|.+
T Consensus        10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT-AAMKSLDLSFN--KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EECTTSCCSSCCSCCC-TTCCEEECCSS--CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCccccccccCC-CCccEEECcCC--ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            5677888888988664 89999999998  455665556799999999999999998865 6899999999999999999


Q ss_pred             CC-c-cccCCCCCccEEEeeCCCCCc--cchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccc
Q 048810          293 KD-I-AKVGQLKKLEVLSFRDSDIEQ--LPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWE  365 (582)
Q Consensus       293 ~~-~-~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~  365 (582)
                      ++ + ..++++++|++|++++|.++.  .|..++++++|++|++++|..++.+|+..++.+++|++|++++|.+...
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            98 4 459999999999999999984  4678999999999999997768888876689999999999999876543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=1.2e-24  Score=236.02  Aligned_cols=192  Identities=15%  Similarity=0.170  Sum_probs=146.4

Q ss_pred             EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCC
Q 048810          212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGC  290 (582)
Q Consensus       212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~  290 (582)
                      +.++.+++.+..+|.... ++++.|+++++  ....++...|+++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFN--PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             TEEECTTSCCSSCCTTSC-TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CceEccCCCcccCCCCCC-CCcCEEECCCC--CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            468889999999998664 89999999997  56677776789999999999999999886 568999999999999999


Q ss_pred             CCCC--ccccCCCCCccEEEeeCCCCCccc-hhhcCCCCCCEEccccccccc--ccCcccccCCCcccEEEcCCCccccc
Q 048810          291 RLKD--IAKVGQLKKLEVLSFRDSDIEQLP-LEIGQLRRLQLLDLSNCWTLE--VIAPNVISKLSRLEELYMGNSFKRWE  365 (582)
Q Consensus       291 ~l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~--~lp~~~l~~l~~L~~L~l~~~~~~~~  365 (582)
                      .++.  |..++++++|++|++++|.+..+| ..++++++|++|++++| .+.  .+|.. ++++++|++|++++|.+...
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred             cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcceec
Confidence            9988  678999999999999999999877 66999999999999995 455  46665 89999999999999976543


Q ss_pred             cccCCCccchhhccCCCC-ccEEEEEecccccCCccc-ccccccEEEEEe
Q 048810          366 KVEGGSNASLVELNGLSK-LTTLEIHVRYAEILPQDL-VSVELQRYKMFI  413 (582)
Q Consensus       366 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~  413 (582)
                       .    ......+.+++. +..|++++|.+..++... ...+|+.|++..
T Consensus       169 -~----~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~  213 (606)
T 3vq2_A          169 -T----VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG  213 (606)
T ss_dssp             -C----TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred             -C----hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccC
Confidence             0    011122222222 335555555555444433 222445554443

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.92  E-value=1.9e-26  Score=245.10  Aligned_cols=170  Identities=14%  Similarity=0.142  Sum_probs=132.0

Q ss_pred             CcceEEccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHHhccccccc
Q 048810            3 SQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEI   82 (582)
Q Consensus         3 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~   82 (582)
                      +..+|+|++|+++|||+||+++||+...++++.+++++|+++|+|+||||+++|+.|+.++   |+.+ +.+..... + 
T Consensus       284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~-~-  357 (549)
T 2a5y_B          284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLE-S-  357 (549)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHH-H-
T ss_pred             CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhh-c-
Confidence            3468999999999999999999996544688899999999999999999999999998774   4333 33322211 0 


Q ss_pred             cchhhhHHHHHHHHHhhcCchhHHHHHH-----------HhccCCCCCccChhHHHHHhhcc--Ccccccc---cHHHHH
Q 048810           83 DGMEKNVYLSIKLSYDFLRSEEAKSLFL-----------LCGLFSEGHAIPVPYLLRYGMGM--GYFKEVY---TVEEAR  146 (582)
Q Consensus        83 ~~~~~~i~~~l~~sy~~L~~~~lk~cfl-----------y~~~fp~~~~i~~~~li~~Wiae--g~~~~~~---~~~~~~  146 (582)
                       ....++.+++.+||++||.+ +|.||+           |||+||+++.|+    +++|+|+  ||+....   +.++++
T Consensus       358 -~~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~  431 (549)
T 2a5y_B          358 -RGLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA  431 (549)
T ss_dssp             -HCSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred             -ccHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence             01356888999999999998 999999           999999999999    8999999  9997532   233333


Q ss_pred             HHHHHHHHHHHhccccccCC--CCccEEhhhHHHHHHHHHhccC
Q 048810          147 SRVHTLIGKLKSLCLLLDGD--AEDEVKMHDVIRVVAVSIAEDE  188 (582)
Q Consensus       147 ~~~~~~~~~L~~~~l~~~~~--~~~~~~mhdl~~~l~~~~~~~~  188 (582)
                         . ++++|+++||++...  ...+|+|||++|++|+.++.++
T Consensus       432 ---~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~  471 (549)
T 2a5y_B          432 ---D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ  471 (549)
T ss_dssp             ---H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred             ---H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence               3 789999999998653  3467999999999999888754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=6.4e-24  Score=227.74  Aligned_cols=141  Identities=19%  Similarity=0.211  Sum_probs=79.3

Q ss_pred             EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCC
Q 048810          212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGC  290 (582)
Q Consensus       212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~  290 (582)
                      ++++++++.+..+|.... ++++.|+++++  ....+++..|..+++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus        34 ~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLP-PRTKALSLSQN--SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCSCCTTSC-TTCCEEECCSS--CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCccCCCCCC-CCcCEEECCCC--CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            556666666666655442 56666666665  34445544456666666666666666554 445666666666666666


Q ss_pred             CCCC-ccccCCCCCccEEEeeCCCCCccc--hhhcCCCCCCEEcccccccccccCcccccCCCcc--cEEEcCCCc
Q 048810          291 RLKD-IAKVGQLKKLEVLSFRDSDIEQLP--LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL--EELYMGNSF  361 (582)
Q Consensus       291 ~l~~-~~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L--~~L~l~~~~  361 (582)
                      .++. |..  .+++|++|++++|.+..+|  ..++++++|++|++++ +.+....   +..+++|  ++|++++|.
T Consensus       111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLD---LLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTTT---TGGGTTSCEEEEEEEESS
T ss_pred             cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCC-CccccCc---hhhhhhceeeEEEeeccc
Confidence            6665 333  5666666666666666443  4566666666666666 2333221   2333333  555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=5.6e-24  Score=223.61  Aligned_cols=302  Identities=17%  Similarity=0.104  Sum_probs=231.6

Q ss_pred             hhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-h
Q 048810          199 LEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-S  275 (582)
Q Consensus       199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~  275 (582)
                      .+..+|...+..++.|++++|.+..++..  ..+++|+.|+++++  ....+++..|.++++|++|++++|.++.+|. .
T Consensus        22 ~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   99 (477)
T 2id5_A           22 RFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN--IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV   99 (477)
T ss_dssp             CCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred             CcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC--ccCEeChhhhhCCccCCEEECCCCcCCccCccc
Confidence            34445555667899999999999887542  38999999999987  5556656667999999999999999999886 4


Q ss_pred             hhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810          276 LDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL  352 (582)
Q Consensus       276 i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L  352 (582)
                      ++++++|++|++++|.+..  +..+..+++|++|++++|.+..+ |..+..+++|++|++++ +.++.+|...+..+++|
T Consensus       100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L  178 (477)
T 2id5_A          100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLHGL  178 (477)
T ss_dssp             STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCTTC
T ss_pred             ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccCCC
Confidence            7899999999999999988  57899999999999999999966 45689999999999999 57888887778999999


Q ss_pred             cEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccc-ccCCccc-ccccccEEEEEeccccccccccccccccc
Q 048810          353 EELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYA-EILPQDL-VSVELQRYKMFIGEARGRWFVKSETSRLM  430 (582)
Q Consensus       353 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l  430 (582)
                      +.|++++|.+...        ....+..+++|+.|+++++.. ..++... ...+|+.|+++.+.. .            
T Consensus       179 ~~L~l~~n~i~~~--------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~------------  237 (477)
T 2id5_A          179 IVLRLRHLNINAI--------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-T------------  237 (477)
T ss_dssp             CEEEEESCCCCEE--------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC-C------------
T ss_pred             cEEeCCCCcCcEe--------ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc-c------------
Confidence            9999999876554        345688899999999998653 4455443 555888888876553 0            


Q ss_pred             eecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccc
Q 048810          431 KLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLL  510 (582)
Q Consensus       431 ~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L  510 (582)
                              ..   |......+++|+.|+|++|......+..   +..+++|++|++++|. +..+...    ....+++|
T Consensus       238 --------~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L  298 (477)
T 2id5_A          238 --------AV---PYLAVRHLVYLRFLNLSYNPISTIEGSM---LHELLRLQEIQLVGGQ-LAVVEPY----AFRGLNYL  298 (477)
T ss_dssp             --------SC---CHHHHTTCTTCCEEECCSSCCCEECTTS---CTTCTTCCEEECCSSC-CSEECTT----TBTTCTTC
T ss_pred             --------cc---CHHHhcCccccCeeECCCCcCCccChhh---ccccccCCEEECCCCc-cceECHH----HhcCcccC
Confidence                    01   2222222478889999888744333333   3478899999998874 4444322    35667889


Q ss_pred             ccccccccccccccccccccCcccCCCccEEEEeccc
Q 048810          511 ETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCN  547 (582)
Q Consensus       511 ~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~  547 (582)
                      +.|++++ ++++.++...+   ..+++|+.|++++++
T Consensus       299 ~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          299 RVLNVSG-NQLTTLEESVF---HSVGNLETLILDSNP  331 (477)
T ss_dssp             CEEECCS-SCCSCCCGGGB---SCGGGCCEEECCSSC
T ss_pred             CEEECCC-CcCceeCHhHc---CCCcccCEEEccCCC
Confidence            9999988 46777665433   467889999888875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=1.1e-23  Score=211.89  Aligned_cols=282  Identities=15%  Similarity=0.110  Sum_probs=225.7

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT  284 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~  284 (582)
                      .....+++++++++|.+..++....+++|++|++.++  ....++  .|..+++|++|++++|.++.+|. +..+++|++
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n--~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~  136 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN--KITDIS--ALQNLTNLRELYLNEDNISDISP-LANLTKMYS  136 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS--CCCCCG--GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred             hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC--cccCch--HHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence            5567899999999999998888669999999999987  444454  36899999999999999999887 999999999


Q ss_pred             EEcCCCCCC-CccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccc
Q 048810          285 LCLDGCRLK-DIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       285 L~L~~~~l~-~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      |++++|... .++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..++.  +..+++|+.|++++|.+.
T Consensus       137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTAYVNQIT  212 (347)
T ss_dssp             EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceeecccCCCC
Confidence            999999544 47779999999999999999998887 899999999999994 6777776  789999999999998754


Q ss_pred             cccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccc
Q 048810          364 WEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLR  443 (582)
Q Consensus       364 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~  443 (582)
                      ..          ..+..+++|+.|++++|.+..++....+++|+.|+++.+.. ..                        
T Consensus       213 ~~----------~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~------------------------  257 (347)
T 4fmz_A          213 DI----------TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI-SD------------------------  257 (347)
T ss_dssp             CC----------GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CC------------------------
T ss_pred             CC----------chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCcc-CC------------------------
Confidence            33          22788999999999999999888744888999998865543 00                        


Q ss_pred             cchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccc
Q 048810          444 NPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLET  523 (582)
Q Consensus       444 ~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~  523 (582)
                      .+.+.. +++|+.|++++|.. +..+ .   ++.+++|++|++++|. +...+.    .....+++|+.|++++++ ++.
T Consensus       258 ~~~~~~-l~~L~~L~l~~n~l-~~~~-~---~~~l~~L~~L~L~~n~-l~~~~~----~~l~~l~~L~~L~L~~n~-l~~  325 (347)
T 4fmz_A          258 INAVKD-LTKLKMLNVGSNQI-SDIS-V---LNNLSQLNSLFLNNNQ-LGNEDM----EVIGGLTNLTTLFLSQNH-ITD  325 (347)
T ss_dssp             CGGGTT-CTTCCEEECCSSCC-CCCG-G---GGGCTTCSEEECCSSC-CCGGGH----HHHHTCTTCSEEECCSSS-CCC
T ss_pred             ChhHhc-CCCcCEEEccCCcc-CCCh-h---hcCCCCCCEEECcCCc-CCCcCh----hHhhccccCCEEEccCCc-ccc
Confidence            011112 48999999999863 4443 2   4489999999999985 332211    134568999999999954 665


Q ss_pred             cccccccCcccCCCccEEEEeccc
Q 048810          524 ICCSQLREDQSFSNLRIIEVEHCN  547 (582)
Q Consensus       524 ~~~~~~~~~~~~~~L~~L~l~~c~  547 (582)
                      ++.     ...+++|++|++++|+
T Consensus       326 ~~~-----~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          326 IRP-----LASLSKMDSADFANQV  344 (347)
T ss_dssp             CGG-----GGGCTTCSEESSSCC-
T ss_pred             ccC-----hhhhhccceeehhhhc
Confidence            533     5679999999999984

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=3.8e-24  Score=230.21  Aligned_cols=341  Identities=15%  Similarity=0.090  Sum_probs=198.7

Q ss_pred             HhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccC
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLIN  281 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~  281 (582)
                      .....++++|++++|.+..++..  ..+++|++|+++++  ....+++..|.++++|++|++++|.++.+|. .++++++
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  125 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN--PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred             hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC--cCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence            44567888888888888776543  37888888888887  4556666667888888888888888888765 5888888


Q ss_pred             ccEEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccc-hhhcCCCCC----CEEcccccccccccCc----------
Q 048810          282 LQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLP-LEIGQLRRL----QLLDLSNCWTLEVIAP----------  343 (582)
Q Consensus       282 L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L----~~L~l~~~~~l~~lp~----------  343 (582)
                      |++|++++|.++.   |..++++++|++|++++|.++.++ ..++.+++|    ++|++++| .+..+++          
T Consensus       126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n-~l~~~~~~~~~~~~L~~  204 (570)
T 2z63_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHK  204 (570)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC-CCCEECTTTTTTCEEEE
T ss_pred             ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC-CceecCHHHhccCccee
Confidence            8888888888765   677888888888888888777553 335544444    45555442 1111111          


Q ss_pred             -----------------------------------------------------------------------ccccCCCcc
Q 048810          344 -----------------------------------------------------------------------NVISKLSRL  352 (582)
Q Consensus       344 -----------------------------------------------------------------------~~l~~l~~L  352 (582)
                                                                                             ..++.+++|
T Consensus       205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L  284 (570)
T 2z63_A          205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV  284 (570)
T ss_dssp             EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred             EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence                                                                                   113445667


Q ss_pred             cEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcc---------------------cccccccEEEE
Q 048810          353 EELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD---------------------LVSVELQRYKM  411 (582)
Q Consensus       353 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------------------~~~~~L~~L~l  411 (582)
                      ++|++++|.+...         +..+..+ +|+.|++++|.+..+|..                     ..+++|+.|++
T Consensus       285 ~~L~l~~~~l~~l---------~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l  354 (570)
T 2z63_A          285 SSFSLVSVTIERV---------KDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL  354 (570)
T ss_dssp             SEEEEESCEECSC---------CBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred             cEEEecCccchhh---------hhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence            7777666643321         2223333 444444444433333221                     23344555544


Q ss_pred             Eecccc-----ccccccccccccceecccceeehc---------------------ccc-chHHHhhhcccceeeccccC
Q 048810          412 FIGEAR-----GRWFVKSETSRLMKLERLKSVSIL---------------------LRN-PGMRMLLQRTEDLWLETLEG  464 (582)
Q Consensus       412 ~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~~l---------------------~~~-~~i~~~~~~L~~L~L~~~~~  464 (582)
                      +.+...     +......+.++.+.+..+......                     ..+ ..+.. +++|+.|++++|..
T Consensus       355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l  433 (570)
T 2z63_A          355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHT  433 (570)
T ss_dssp             CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT-CTTCCEEECTTSCC
T ss_pred             cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc-CCCCCEEeCcCCcc
Confidence            433220     111222334444444333211110                     001 11222 35666666666654


Q ss_pred             cccccccccCCCCCCCCcEEEEeecCCc-eeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEE
Q 048810          465 VPSVVHELDDGEGFPRLKHLYVESCSEI-LHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEV  543 (582)
Q Consensus       465 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l  543 (582)
                      ....+..   ++.+++|++|++++|.-. ..++     .....+++|+.|+++++ +++.+...   ..+.+++|++|++
T Consensus       434 ~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~p-----~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l  501 (570)
T 2z63_A          434 RVAFNGI---FNGLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQC-QLEQLSPT---AFNSLSSLQVLNM  501 (570)
T ss_dssp             EECCTTT---TTTCTTCCEEECTTCEEGGGEEC-----SCCTTCTTCCEEECTTS-CCCEECTT---TTTTCTTCCEEEC
T ss_pred             cccchhh---hhcCCcCcEEECcCCcCccccch-----hhhhcccCCCEEECCCC-ccccCChh---hhhcccCCCEEeC
Confidence            3333333   235677777777766422 1222     13556778888888774 45544222   1457788889998


Q ss_pred             ecccCcccccChhHHhhhhhcceeeeccCc
Q 048810          544 EHCNKLKHLFSFSMAKNLLWLQKVGVEECD  573 (582)
Q Consensus       544 ~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~  573 (582)
                      ++| +++.+++ ..+.++++|++|++++++
T Consensus       502 ~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          502 ASN-QLKSVPD-GIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             CCC-cCCCCCH-HHhhcccCCcEEEecCCc
Confidence            888 6777765 345788889999988754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=6.9e-24  Score=237.90  Aligned_cols=161  Identities=18%  Similarity=0.266  Sum_probs=128.8

Q ss_pred             hhHHHHHhhccCcEEEEecCCCCcCCCC-C-CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-Chh
Q 048810          199 LEKKMEETIRKDPIAISLPYRGDQVLPQ-R-MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSS  275 (582)
Q Consensus       199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~  275 (582)
                      .+...|. .+.++++|++++|.+..+.. . ..+++|++|+++++ .....+++..|.++++|++|+|++|.+..+ |..
T Consensus        15 ~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           15 NLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             CSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            3444455 67899999999999977643 3 38999999999998 456677677789999999999999999885 889


Q ss_pred             hhcccCccEEEcCCCCCCC--ccc--cCCCCCccEEEeeCCCCCcc--chhhcCCCCCCEEcccccccccccCcccccCC
Q 048810          276 LDRLINLQTLCLDGCRLKD--IAK--VGQLKKLEVLSFRDSDIEQL--PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKL  349 (582)
Q Consensus       276 i~~L~~L~~L~L~~~~l~~--~~~--~~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l  349 (582)
                      ++++++|++|++++|.+++  |..  ++++++|++|++++|.+..+  +..++++++|++|++++| .+..+.+..++.+
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l  171 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPL  171 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHH
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccc
Confidence            9999999999999999987  544  99999999999999999865  357999999999999995 4544433335555


Q ss_pred             --CcccEEEcCCCcc
Q 048810          350 --SRLEELYMGNSFK  362 (582)
Q Consensus       350 --~~L~~L~l~~~~~  362 (582)
                        ++|+.|++++|.+
T Consensus       172 ~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          172 QGKTLSFFSLAANSL  186 (844)
T ss_dssp             HHCSSCCCEECCSBS
T ss_pred             cCCccceEECCCCcc
Confidence              5666666666543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=6.2e-24  Score=231.59  Aligned_cols=356  Identities=15%  Similarity=0.153  Sum_probs=234.0

Q ss_pred             hhhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-
Q 048810          198 DLEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-  274 (582)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-  274 (582)
                      ..+..+|...+..+++|++++|.+..++..  .++++|++|++++|  ....+++..|.++++|++|+|++|.++.+|. 
T Consensus        41 ~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N--~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~  118 (635)
T 4g8a_A           41 LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG  118 (635)
T ss_dssp             SCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred             CCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC--cCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence            345566666778999999999999988763  38999999999987  6677888888999999999999999999875 


Q ss_pred             hhhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCC--ccchhhcCCCCCCEEcccccccccccCcccccCCC
Q 048810          275 SLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIE--QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLS  350 (582)
Q Consensus       275 ~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~  350 (582)
                      .+++|++|++|++++|+++. + ..++++++|++|++++|.+.  .+|..++.+++|++|++++| .++.+++..+..+.
T Consensus       119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH  197 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH
T ss_pred             HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchh
Confidence            58999999999999999998 3 46899999999999999887  46788999999999999984 45444332222111


Q ss_pred             cc---------------------------cEEEcCCCc------------------------------------------
Q 048810          351 RL---------------------------EELYMGNSF------------------------------------------  361 (582)
Q Consensus       351 ~L---------------------------~~L~l~~~~------------------------------------------  361 (582)
                      ++                           +.+.+.++.                                          
T Consensus       198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~  277 (635)
T 4g8a_A          198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG  277 (635)
T ss_dssp             TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred             hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence            11                           111111110                                          


Q ss_pred             --------------------------------------------------------------cccccc-----------c
Q 048810          362 --------------------------------------------------------------KRWEKV-----------E  368 (582)
Q Consensus       362 --------------------------------------------------------------~~~~~~-----------~  368 (582)
                                                                                    +.....           .
T Consensus       278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~  357 (635)
T 4g8a_A          278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT  357 (635)
T ss_dssp             GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred             ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence                                                                          000000           0


Q ss_pred             CCCccchhhccCCCCccEEEEEecccccCC---ccc-ccccccEEEEEeccc--cccccccccc----------------
Q 048810          369 GGSNASLVELNGLSKLTTLEIHVRYAEILP---QDL-VSVELQRYKMFIGEA--RGRWFVKSET----------------  426 (582)
Q Consensus       369 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~-~~~~L~~L~l~~~~~--~~~~~~~~~~----------------  426 (582)
                      ............+++|+.|+++.|.+....   ... ...+|+.+++..+..  ..........                
T Consensus       358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  437 (635)
T 4g8a_A          358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE  437 (635)
T ss_dssp             SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred             cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence            000000112235678899998887664321   111 445566665433221  0011111112                


Q ss_pred             ---------cccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeec
Q 048810          427 ---------SRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVG  497 (582)
Q Consensus       427 ---------l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  497 (582)
                               +..+.+..+.....   ++.....+++++.|++++|.......+..  ++.+++|++|+|++| .++.++.
T Consensus       438 ~~~~~~l~~l~~l~ls~n~l~~~---~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~--~~~l~~L~~L~Ls~N-~L~~l~~  511 (635)
T 4g8a_A          438 FSVFLSLRNLIYLDISHTHTRVA---FNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQC-QLEQLSP  511 (635)
T ss_dssp             SCTTTTCTTCCEEECTTSCCEEC---CTTTTTTCTTCCEEECTTCEEGGGEECSC--CTTCTTCCEEECTTS-CCCEECT
T ss_pred             ccccccccccccccccccccccc---cccccccchhhhhhhhhhcccccccCchh--hhhccccCEEECCCC-ccCCcCh
Confidence                     22222222211111   22222335788899998887554433222  448899999999998 4666643


Q ss_pred             ccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhh-hhcceeeeccC
Q 048810          498 SVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNL-LWLQKVGVEEC  572 (582)
Q Consensus       498 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l-~~L~~L~i~~C  572 (582)
                      .    ....+++|++|++++ ++++.++...   .+.+++|+.|+++++ +++.+++. .+.++ ++|+.|++.++
T Consensus       512 ~----~f~~l~~L~~L~Ls~-N~l~~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~-~l~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          512 T----AFNSLSSLQVLNMSH-NNFFSLDTFP---YKCLNSLQVLDYSLN-HIMTSKKQ-ELQHFPSSLAFLNLTQN  577 (635)
T ss_dssp             T----TTTTCTTCCEEECTT-SCCCBCCCGG---GTTCTTCCEEECTTS-CCCBCCSS-CTTCCCTTCCEEECTTC
T ss_pred             H----HHcCCCCCCEEECCC-CcCCCCChhH---HhCCCCCCEEECCCC-cCCCCCHH-HHHhhhCcCCEEEeeCC
Confidence            3    456789999999998 5777776543   357899999999998 67777663 44566 68999999653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=1.3e-23  Score=219.60  Aligned_cols=339  Identities=14%  Similarity=0.125  Sum_probs=246.1

Q ss_pred             EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-C-ChhhhcccCccEEEcCC
Q 048810          212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-L-PSSLDRLINLQTLCLDG  289 (582)
Q Consensus       212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-l-p~~i~~L~~L~~L~L~~  289 (582)
                      +.++..++.+..+|.  -.++++.|+++++  ....+++..|+++++|++|++++|.+.. + |..++.+++|++|++++
T Consensus        13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLHQVPE--LPAHVNYVDLSLN--SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCSSCCC--CCTTCCEEECCSS--CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcccCCC--CCCccCEEEecCC--ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            457778888888888  3489999999997  5556656667999999999999999863 4 56799999999999999


Q ss_pred             CCCCC--ccccCCCCCccEEEeeCCCCCc-cchh--hcCCCCCCEEccccccccccc-CcccccCCCcccEEEcCCCccc
Q 048810          290 CRLKD--IAKVGQLKKLEVLSFRDSDIEQ-LPLE--IGQLRRLQLLDLSNCWTLEVI-APNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       290 ~~l~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~l-p~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      |.++.  |..++++++|++|++++|.++. .|..  ++.+++|++|++++| .+..+ |...++.+++|++|++++|.+.
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCccc
Confidence            99987  6789999999999999999985 4554  889999999999995 46665 5444789999999999999765


Q ss_pred             cccccCCCccchhhccCC--CCccEEEEEecccccCCccc----------ccccccEEEEEecccc---ccccc---ccc
Q 048810          364 WEKVEGGSNASLVELNGL--SKLTTLEIHVRYAEILPQDL----------VSVELQRYKMFIGEAR---GRWFV---KSE  425 (582)
Q Consensus       364 ~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~----------~~~~L~~L~l~~~~~~---~~~~~---~~~  425 (582)
                      ..        .+..+..+  .+|+.|+++++.+..++...          .+++|+.|+++.+...   +....   ...
T Consensus       168 ~~--------~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  239 (455)
T 3v47_A          168 SI--------CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT  239 (455)
T ss_dssp             CC--------CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTC
T ss_pred             cc--------ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccc
Confidence            44        33444444  68999999999888766442          4467888888766531   11111   113


Q ss_pred             ccccceecccceeehc--------cccchHHH-hhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeee
Q 048810          426 TSRLMKLERLKSVSIL--------LRNPGMRM-LLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIV  496 (582)
Q Consensus       426 ~l~~l~l~~~~~~~~l--------~~~~~i~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  496 (582)
                      .++.+.+..+......        ..+..+.. ..++|+.|+++++......+..+   +.+++|++|++++|. +..++
T Consensus       240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~  315 (455)
T 3v47_A          240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF---SHFTDLEQLTLAQNE-INKID  315 (455)
T ss_dssp             CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT---TTCTTCCEEECTTSC-CCEEC
T ss_pred             ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc---ccCCCCCEEECCCCc-ccccC
Confidence            4444444432111000        00011111 12689999999988655555544   489999999999984 44443


Q ss_pred             cccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcchH
Q 048810          497 GSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELK  576 (582)
Q Consensus       497 ~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~  576 (582)
                      ..    ....+++|+.|+++++ ++..++...   .+.+++|++|++++| +++.+++ ..+..+++|++|++++|. ++
T Consensus       316 ~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~  384 (455)
T 3v47_A          316 DN----AFWGLTHLLKLNLSQN-FLGSIDSRM---FENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTNQ-LK  384 (455)
T ss_dssp             TT----TTTTCTTCCEEECCSS-CCCEECGGG---GTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CS
T ss_pred             hh----HhcCcccCCEEECCCC-ccCCcChhH---hcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCCc-cc
Confidence            22    3567899999999984 666664432   457899999999999 6777754 356789999999999863 44


Q ss_pred             HH
Q 048810          577 MI  578 (582)
Q Consensus       577 ~i  578 (582)
                      .+
T Consensus       385 ~~  386 (455)
T 3v47_A          385 SV  386 (455)
T ss_dssp             CC
T ss_pred             cC
Confidence            33

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=8.3e-24  Score=232.43  Aligned_cols=162  Identities=18%  Similarity=0.159  Sum_probs=123.7

Q ss_pred             hhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-h
Q 048810          199 LEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-S  275 (582)
Q Consensus       199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~  275 (582)
                      .+...|...+.++++|++++|.+..++..  ..+++|++|+++++  ....+++..|+++++|++|++++|.++.+|. .
T Consensus        15 ~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~   92 (680)
T 1ziw_A           15 KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN--TISKLEPELCQKLPMLKVLNLQHNELSQLSDKT   92 (680)
T ss_dssp             CCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS--CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred             CccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC--ccCccCHHHHhcccCcCEEECCCCccCccChhh
Confidence            34444544557889999999988877763  37889999999887  4555656667888999999999998888886 5


Q ss_pred             hhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccccCccccc--CCC
Q 048810          276 LDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVIS--KLS  350 (582)
Q Consensus       276 i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~l~--~l~  350 (582)
                      ++++++|++|++++|.++.  +..++++++|++|++++|.+... |..++++++|++|++++| .+..+++..++  .++
T Consensus        93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~  171 (680)
T 1ziw_A           93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANS  171 (680)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTC
T ss_pred             hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccc
Confidence            8889999999999998887  35788889999999998888755 445778888999988884 56666554333  457


Q ss_pred             cccEEEcCCCccc
Q 048810          351 RLEELYMGNSFKR  363 (582)
Q Consensus       351 ~L~~L~l~~~~~~  363 (582)
                      +|++|++++|.+.
T Consensus       172 ~L~~L~L~~n~l~  184 (680)
T 1ziw_A          172 SLKKLELSSNQIK  184 (680)
T ss_dssp             EESEEECTTCCCC
T ss_pred             cccEEECCCCccc
Confidence            8888888877543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=2.3e-23  Score=228.97  Aligned_cols=337  Identities=16%  Similarity=0.071  Sum_probs=217.7

Q ss_pred             EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCC
Q 048810          212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGC  290 (582)
Q Consensus       212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~  290 (582)
                      +.++.+++.+..+|.... ++++.|+++++  ....++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus         7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP-TNITVLNLTHN--QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC-TTCSEEECCSS--CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             CeeECCCCCccccccccC-CCCcEEECCCC--CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            468888889988987664 79999999997  56677877789999999999999999885 678999999999999999


Q ss_pred             CCCC-cc-ccCCCCCccEEEeeCCCCCccc-hhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810          291 RLKD-IA-KVGQLKKLEVLSFRDSDIEQLP-LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV  367 (582)
Q Consensus       291 ~l~~-~~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (582)
                      .++. |+ .++++++|++|++++|.+..+| ..++++++|++|++++| .+...++..++++++|++|++++|.+...  
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--  160 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQAL--  160 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCB--
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccccc--
Confidence            9998 54 6999999999999999999887 46899999999999995 56666655588999999999999876443  


Q ss_pred             cCCCccchhhc--cCCCCccEEEEEecccccCCccc--ccccccEEEEEecccccccc------ccccccccceecccce
Q 048810          368 EGGSNASLVEL--NGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGEARGRWF------VKSETSRLMKLERLKS  437 (582)
Q Consensus       368 ~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~------~~~~~l~~l~l~~~~~  437 (582)
                            ....+  ..+++|+.|++++|.+..++...  .+.+|+.+.+..........      .....++.+.+..+..
T Consensus       161 ------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l  234 (680)
T 1ziw_A          161 ------KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL  234 (680)
T ss_dssp             ------CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred             ------CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence                  23333  35689999999999887766543  56666666653322200000      0113344444444322


Q ss_pred             eehccccchHHHhh-hcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccc
Q 048810          438 VSILLRNPGMRMLL-QRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLI  516 (582)
Q Consensus       438 ~~~l~~~~~i~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~  516 (582)
                      ....  +.++..+. ++|+.|++++|......+..   ++.+++|++|++++|. +..++..    ....+++|+.|++.
T Consensus       235 ~~~~--~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~L~  304 (680)
T 1ziw_A          235 STTS--NTTFLGLKWTNLTMLDLSYNNLNVVGNDS---FAWLPQLEYFFLEYNN-IQHLFSH----SLHGLFNVRYLNLK  304 (680)
T ss_dssp             CEEC--TTTTGGGGGSCCCEEECTTSCCCEECTTT---TTTCTTCCEEECCSCC-BSEECTT----TTTTCTTCCEEECT
T ss_pred             cccC--hhHhhccCcCCCCEEECCCCCcCccCccc---ccCcccccEeeCCCCc-cCccChh----hhcCCCCccEEecc
Confidence            1110  33333321 23777777766543333333   2366777777777663 3333211    23455666666665


Q ss_pred             cccccc-----ccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccC
Q 048810          517 GLANLE-----TICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEEC  572 (582)
Q Consensus       517 ~~~~L~-----~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C  572 (582)
                      ++..-.     .++.-.-...+.+++|++|++++| .+..+++ ..+..+++|++|++.+|
T Consensus       305 ~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             TCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTC
T ss_pred             chhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCC
Confidence            422110     111000001334555666666555 3444433 12345555555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=8.9e-24  Score=216.00  Aligned_cols=301  Identities=18%  Similarity=0.198  Sum_probs=230.5

Q ss_pred             hccCcEEEEecCCCCcCCCCCC--CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCcc
Q 048810          207 IRKDPIAISLPYRGDQVLPQRM--RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQ  283 (582)
Q Consensus       207 ~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~  283 (582)
                      ...+++++++.++.+..+|...  .+++|++|+++++  ....++...|..+++|++|++++|.++.+| ..++.+++|+
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL--QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC--cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            3578899999999998888854  7899999999987  556677667789999999999999998865 5589999999


Q ss_pred             EEEcCCCCCCC-ccc-cCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810          284 TLCLDGCRLKD-IAK-VGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS  360 (582)
Q Consensus       284 ~L~L~~~~l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (582)
                      +|++++|.++. |.. ++++++|++|++++|.+..++. .++.+++|++|++++ +.++.++   ++.+++|+.|++++|
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYN  196 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCSS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeecccc
Confidence            99999999998 544 6889999999999999987755 488999999999999 5566664   567899999999887


Q ss_pred             ccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc-cccccccccccccceecccceee
Q 048810          361 FKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA-RGRWFVKSETSRLMKLERLKSVS  439 (582)
Q Consensus       361 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~l~l~~~~~~~  439 (582)
                      ...             .+....+|+.|++++|.+..++... .++|+.|++..+.. ...+....+.++.+.+..+.-..
T Consensus       197 ~l~-------------~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~  262 (390)
T 3o6n_A          197 LLS-------------TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK  262 (390)
T ss_dssp             CCS-------------EEECCSSCSEEECCSSCCCEEECCC-CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred             ccc-------------ccCCCCcceEEECCCCeeeeccccc-cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC
Confidence            543             2334457888888888887765543 46788888876654 23345566677777777664332


Q ss_pred             hccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccc
Q 048810          440 ILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLA  519 (582)
Q Consensus       440 ~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  519 (582)
                      ..  |..+.. +++|+.|++++|.. +.++..   .+.+|+|++|++++| .+..++.     ....+++|+.|++++ +
T Consensus       263 ~~--~~~~~~-l~~L~~L~L~~n~l-~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-----~~~~l~~L~~L~L~~-N  328 (390)
T 3o6n_A          263 IM--YHPFVK-MQRLERLYISNNRL-VALNLY---GQPIPTLKVLDLSHN-HLLHVER-----NQPQFDRLENLYLDH-N  328 (390)
T ss_dssp             EE--SGGGTT-CSSCCEEECCSSCC-CEEECS---SSCCTTCCEEECCSS-CCCCCGG-----GHHHHTTCSEEECCS-S
T ss_pred             cC--hhHccc-cccCCEEECCCCcC-cccCcc---cCCCCCCCEEECCCC-cceecCc-----cccccCcCCEEECCC-C
Confidence            21  344444 48999999999874 444443   347999999999998 4555542     245689999999998 4


Q ss_pred             cccccccccccCcccCCCccEEEEeccc
Q 048810          520 NLETICCSQLREDQSFSNLRIIEVEHCN  547 (582)
Q Consensus       520 ~L~~~~~~~~~~~~~~~~L~~L~l~~c~  547 (582)
                      .++.++      ...+++|+.|++++++
T Consensus       329 ~i~~~~------~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          329 SIVTLK------LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CCCCCC------CCTTCCCSEEECCSSC
T ss_pred             ccceeC------chhhccCCEEEcCCCC
Confidence            566553      5678999999999984

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=2.9e-23  Score=217.27  Aligned_cols=301  Identities=18%  Similarity=0.173  Sum_probs=188.9

Q ss_pred             CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEE
Q 048810          229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLS  308 (582)
Q Consensus       229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~  308 (582)
                      .+++++.|.+.++  ....++.  +..+++|++|++++|.++.+|. ++.+++|++|++++|.+.....++++++|++|+
T Consensus        44 ~l~~l~~L~l~~~--~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  118 (466)
T 1o6v_A           44 DLDQVTTLQADRL--GIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT  118 (466)
T ss_dssp             HHHTCCEEECCSS--CCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             HhccccEEecCCC--CCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence            4678999999887  4455654  5789999999999999999987 999999999999999999944499999999999


Q ss_pred             eeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810          309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE  388 (582)
Q Consensus       309 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  388 (582)
                      +++|.++.+|. +.++++|++|++++| .+..++.  ++.+++|++|++.++..           ....+.++++|+.|+
T Consensus       119 L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~~~-----------~~~~~~~l~~L~~L~  183 (466)
T 1o6v_A          119 LFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQVT-----------DLKPLANLTTLERLD  183 (466)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEESCC-----------CCGGGTTCTTCCEEE
T ss_pred             CCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCccc-----------CchhhccCCCCCEEE
Confidence            99999999887 999999999999995 5666664  67777887777753211           122356666666666


Q ss_pred             EEecccccCCcccccccccEEEEEecccc-ccccccccccccceecccceeehccccchHHHhhhcccceeeccccCccc
Q 048810          389 IHVRYAEILPQDLVSVELQRYKMFIGEAR-GRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPS  467 (582)
Q Consensus       389 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~  467 (582)
                      +++|.+..++....+++|+.|++..+... .......+.++.+.+..+.....    +.+.. +++|+.|++++|.... 
T Consensus       184 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~----~~l~~-l~~L~~L~l~~n~l~~-  257 (466)
T 1o6v_A          184 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI----GTLAS-LTNLTDLDLANNQISN-  257 (466)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC----GGGGG-CTTCSEEECCSSCCCC-
T ss_pred             CcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc----hhhhc-CCCCCEEECCCCcccc-
Confidence            66666655544335566666665544330 00122233444444443321111    11222 2444444444443211 


Q ss_pred             cccccc-------------------CCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccccccccccccccc
Q 048810          468 VVHELD-------------------DGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQ  528 (582)
Q Consensus       468 ~~~~~~-------------------~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~  528 (582)
                      .+. +.                   .++.+++|++|++++|. ++.++      ....+++|+.|+++++ ++..++.  
T Consensus       258 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~------~~~~l~~L~~L~L~~n-~l~~~~~--  326 (466)
T 1o6v_A          258 LAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-LEDIS------PISNLKNLTYLTLYFN-NISDISP--  326 (466)
T ss_dssp             CGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CSCCG------GGGGCTTCSEEECCSS-CCSCCGG--
T ss_pred             chh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCc-ccCch------hhcCCCCCCEEECcCC-cCCCchh--
Confidence            111 11                   02245555555555542 22221      2345566666666663 3433321  


Q ss_pred             ccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810          529 LREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD  573 (582)
Q Consensus       529 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~  573 (582)
                         .+.+++|++|++++| +++.++   .+..+++|+.|++++|+
T Consensus       327 ---~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          327 ---VSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             ---GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC
T ss_pred             ---hccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc
Confidence               346677777777777 455553   34667777777777764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=6.4e-23  Score=213.09  Aligned_cols=307  Identities=12%  Similarity=0.070  Sum_probs=195.1

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT  284 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~  284 (582)
                      .....++++++++++.+..+|....+++|+.|+++++  ....++   ++.+++|++|++++|.++.+|  ++.+++|++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n--~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~  110 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN--NITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY  110 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSS--CCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCC--cCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence            4456788999999999888875558889999999887  344444   578899999999999988876  888999999


Q ss_pred             EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      |++++|.++..+ ++.+++|++|++++|.++.++  ++.+++|++|++++|..++.++   ++.+++|++|++++|.+..
T Consensus       111 L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          111 LNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             EECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC
T ss_pred             EECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce
Confidence            999999888853 888899999999999888875  7888899999998876777663   6788889999988886543


Q ss_pred             ccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehcccc
Q 048810          365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRN  444 (582)
Q Consensus       365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~  444 (582)
                      .           .++.+++|+.|++++|.+..++ ...+++|+.|+++.+....-.....+.++.+.+..+.--..   |
T Consensus       185 l-----------~l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~---~  249 (457)
T 3bz5_A          185 L-----------DVSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTEL---D  249 (457)
T ss_dssp             C-----------CCTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC---C
T ss_pred             e-----------ccccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCc---C
Confidence            2           1667777888888877777663 22667777777765554110022233344444433321111   1


Q ss_pred             c-hHHHh------hhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccc---cccCCCCccccccc
Q 048810          445 P-GMRML------LQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVR---RVGCEVFPLLETLY  514 (582)
Q Consensus       445 ~-~i~~~------~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~~~~~~~L~~L~  514 (582)
                      . .+..+      ..+|+.|++++|.....++     .+.+++|+.|++++|..+..++....   ......+++|+.|+
T Consensus       250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~  324 (457)
T 3bz5_A          250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY  324 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred             HHHCCCCCEEeccCCCCCEEECCCCccCCccc-----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence            0 00000      0234445555554333332     23567777777777766665542110   00122233444444


Q ss_pred             ccccccccccccccccCcccCCCccEEEEecccCcccc
Q 048810          515 LIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHL  552 (582)
Q Consensus       515 l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l  552 (582)
                      +++ ++++.+     + .+.+++|+.|+++++ +++.+
T Consensus       325 L~~-N~l~~l-----~-l~~l~~L~~L~l~~N-~l~~l  354 (457)
T 3bz5_A          325 LNN-TELTEL-----D-VSHNTKLKSLSCVNA-HIQDF  354 (457)
T ss_dssp             CTT-CCCSCC-----C-CTTCTTCSEEECCSS-CCCBC
T ss_pred             CCC-Cccccc-----c-cccCCcCcEEECCCC-CCCCc
Confidence            443 223322     1 455666777776665 34443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.90  E-value=4.7e-23  Score=231.12  Aligned_cols=190  Identities=17%  Similarity=0.114  Sum_probs=147.8

Q ss_pred             EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCC-CCC-ChhhhcccCccEEEcCC
Q 048810          212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGS-SSL-PSSLDRLINLQTLCLDG  289 (582)
Q Consensus       212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~-~~l-p~~i~~L~~L~~L~L~~  289 (582)
                      +..+.+++++..+|.  -.++++.|++++|  ....+.+..|.++++|++|++++|.. ..+ |..++++++|++|+|++
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N--~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFN--YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESC--CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCC--cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            567788899999998  5689999999998  45566556679999999999999954 445 78899999999999999


Q ss_pred             CCCCC--ccccCCCCCccEEEeeCCCCCc-cchh--hcCCCCCCEEccccccccccc-CcccccCCCcccEEEcCCCccc
Q 048810          290 CRLKD--IAKVGQLKKLEVLSFRDSDIEQ-LPLE--IGQLRRLQLLDLSNCWTLEVI-APNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       290 ~~l~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~l-p~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      |.+..  |..++++++|++|++++|.+.. +|..  ++++++|++|++++| .+..+ ++..++++++|++|++++|.+.
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCC
Confidence            99988  6889999999999999999985 5665  899999999999995 45554 3345899999999999998765


Q ss_pred             cccccCCCccchhhccCC--CCccEEEEEecccccC-Cccc-ccc------cccEEEEEec
Q 048810          364 WEKVEGGSNASLVELNGL--SKLTTLEIHVRYAEIL-PQDL-VSV------ELQRYKMFIG  414 (582)
Q Consensus       364 ~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~-~~~~-~~~------~L~~L~l~~~  414 (582)
                      ..        .+..+..+  ++|+.|+++.|.+... +..+ .+.      .|+.|+++.+
T Consensus       162 ~~--------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  214 (844)
T 3j0a_A          162 LV--------CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN  214 (844)
T ss_dssp             CC--------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred             ee--------CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence            43        23444444  6788888887766532 2221 222      3677776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=2.3e-23  Score=224.72  Aligned_cols=301  Identities=18%  Similarity=0.198  Sum_probs=229.9

Q ss_pred             hccCcEEEEecCCCCcCCCCCC--CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCcc
Q 048810          207 IRKDPIAISLPYRGDQVLPQRM--RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQ  283 (582)
Q Consensus       207 ~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~  283 (582)
                      ...+++.+++.++.+..+|...  .+++|++|+++++  ....+++..|..+++|++|++++|.++.+|. .++.+++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL--QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC--CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            3567889999999998888754  7899999999987  4556666667899999999999999988764 568999999


Q ss_pred             EEEcCCCCCCC-ccc-cCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810          284 TLCLDGCRLKD-IAK-VGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS  360 (582)
Q Consensus       284 ~L~L~~~~l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (582)
                      +|++++|.++. |+. ++++++|++|++++|.+..+++ .++.+++|++|++++ +.+..++   ++.+++|+.|++++|
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYN  202 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSS
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccC
Confidence            99999999988 544 6899999999999999987665 588999999999999 4666665   467889999999887


Q ss_pred             ccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc-cccccccccccccceecccceee
Q 048810          361 FKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA-RGRWFVKSETSRLMKLERLKSVS  439 (582)
Q Consensus       361 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~l~l~~~~~~~  439 (582)
                      .+.             .+....+|+.|++++|.+..++... .++|+.|++..+.. ...+....+.++.+.+..+....
T Consensus       203 ~l~-------------~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~  268 (597)
T 3oja_B          203 LLS-------------TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK  268 (597)
T ss_dssp             CCS-------------EEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred             ccc-------------cccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC
Confidence            543             2344567888888888887766554 35788888876655 33455666777777777664333


Q ss_pred             hccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccc
Q 048810          440 ILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLA  519 (582)
Q Consensus       440 ~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  519 (582)
                      ..  |..+.. +++|+.|+|++|.. +.++..   .+.+|+|++|+|++|. +..++.     ....+++|+.|++++ +
T Consensus       269 ~~--~~~~~~-l~~L~~L~Ls~N~l-~~l~~~---~~~l~~L~~L~Ls~N~-l~~i~~-----~~~~l~~L~~L~L~~-N  334 (597)
T 3oja_B          269 IM--YHPFVK-MQRLERLYISNNRL-VALNLY---GQPIPTLKVLDLSHNH-LLHVER-----NQPQFDRLENLYLDH-N  334 (597)
T ss_dssp             EE--SGGGTT-CSSCCEEECTTSCC-CEEECS---SSCCTTCCEEECCSSC-CCCCGG-----GHHHHTTCSEEECCS-S
T ss_pred             CC--HHHhcC-ccCCCEEECCCCCC-CCCCcc---cccCCCCcEEECCCCC-CCccCc-----ccccCCCCCEEECCC-C
Confidence            31  445554 48999999999874 444443   3479999999999984 445442     246789999999998 4


Q ss_pred             cccccccccccCcccCCCccEEEEeccc
Q 048810          520 NLETICCSQLREDQSFSNLRIIEVEHCN  547 (582)
Q Consensus       520 ~L~~~~~~~~~~~~~~~~L~~L~l~~c~  547 (582)
                      .+..++      .+.+++|+.|++++|+
T Consensus       335 ~l~~~~------~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          335 SIVTLK------LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CCCCCC------CCTTCCCSEEECCSSC
T ss_pred             CCCCcC------hhhcCCCCEEEeeCCC
Confidence            555543      5678999999999985

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=4.2e-23  Score=206.08  Aligned_cols=291  Identities=15%  Similarity=0.147  Sum_probs=203.4

Q ss_pred             CccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEE
Q 048810          232 RLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLS  308 (582)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~  308 (582)
                      +++.++++++  ....+|..+   .++|++|++++|.++.++ ..++++++|++|++++|.++.  +..++++++|++|+
T Consensus        34 ~l~~l~~~~~--~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDL--GLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSS--CCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCC--CccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            5777777765  444566544   367888888888888764 578888888888888888887  56788888899999


Q ss_pred             eeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810          309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE  388 (582)
Q Consensus       309 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  388 (582)
                      +++|.++.+|..+.  ++|++|++++ +.+..+|...++.+++|++|++++|.+...      ...+..+..+ +|+.|+
T Consensus       109 L~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~~l-~L~~L~  178 (332)
T 2ft3_A          109 ISKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENS------GFEPGAFDGL-KLNYLR  178 (332)
T ss_dssp             CCSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGG------GSCTTSSCSC-CCSCCB
T ss_pred             CCCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccC------CCCcccccCC-ccCEEE
Confidence            98888888887665  7888998888 567777776678888999999888876421      1134455666 888888


Q ss_pred             EEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccc
Q 048810          389 IHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSV  468 (582)
Q Consensus       389 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~  468 (582)
                      +++|.+..+|..+. ++|+.|+++.+..                     ...  .+..+.. +++|+.|++++|......
T Consensus       179 l~~n~l~~l~~~~~-~~L~~L~l~~n~i---------------------~~~--~~~~l~~-l~~L~~L~L~~N~l~~~~  233 (332)
T 2ft3_A          179 ISEAKLTGIPKDLP-ETLNELHLDHNKI---------------------QAI--ELEDLLR-YSKLYRLGLGHNQIRMIE  233 (332)
T ss_dssp             CCSSBCSSCCSSSC-SSCSCCBCCSSCC---------------------CCC--CTTSSTT-CTTCSCCBCCSSCCCCCC
T ss_pred             CcCCCCCccCcccc-CCCCEEECCCCcC---------------------Ccc--CHHHhcC-CCCCCEEECCCCcCCcCC
Confidence            88888888776653 5666666644332                     000  0122322 378899999888754433


Q ss_pred             cccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCc---ccCCCccEEEEec
Q 048810          469 VHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLRED---QSFSNLRIIEVEH  545 (582)
Q Consensus       469 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~---~~~~~L~~L~l~~  545 (582)
                      +..+   +.+++|++|++++| .++.++.     ....+++|+.|++++ ++++.++...+...   ..+++|+.|++.+
T Consensus       234 ~~~~---~~l~~L~~L~L~~N-~l~~lp~-----~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~  303 (332)
T 2ft3_A          234 NGSL---SFLPTLRELHLDNN-KLSRVPA-----GLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFN  303 (332)
T ss_dssp             TTGG---GGCTTCCEEECCSS-CCCBCCT-----TGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred             hhHh---hCCCCCCEEECCCC-cCeecCh-----hhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeec
Confidence            3343   37899999999988 4555542     256788999999988 67777766544311   2367899999999


Q ss_pred             ccCcc-cccChhHHhhhhhcceeeeccCc
Q 048810          546 CNKLK-HLFSFSMAKNLLWLQKVGVEECD  573 (582)
Q Consensus       546 c~~L~-~l~~~~~~~~l~~L~~L~i~~C~  573 (582)
                      ++-.. .+++ ..+..+++|+.++++++.
T Consensus       304 N~~~~~~~~~-~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          304 NPVPYWEVQP-ATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred             CcccccccCc-ccccccchhhhhhccccc
Confidence            87431 3333 356789999999998875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=2.2e-22  Score=200.70  Aligned_cols=291  Identities=16%  Similarity=0.195  Sum_probs=186.7

Q ss_pred             CccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCCC--ccccCCCCCccEEE
Q 048810          232 RLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLS  308 (582)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~  308 (582)
                      +++.+++.++  ....+|..+   .+.|++|++++|.++.+|. .++++++|++|++++|.++.  |..++.+++|++|+
T Consensus        32 ~l~~l~~~~~--~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDL--GLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTS--CCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCC--CccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            4556665554  333444433   3567777777777777654 67777778888887777776  56677777888888


Q ss_pred             eeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810          309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE  388 (582)
Q Consensus       309 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  388 (582)
                      +++|.++.+|..+.  ++|++|++++ +.+..+++..++.+++|++|++++|.....      ...+..+.++++|+.|+
T Consensus       107 Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~~l~~L~~L~  177 (330)
T 1xku_A          107 LSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSS------GIENGAFQGMKKLSYIR  177 (330)
T ss_dssp             CCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGG------GBCTTGGGGCTTCCEEE
T ss_pred             CCCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCcc------CcChhhccCCCCcCEEE
Confidence            88777777776554  6788888877 456666666677788888888877765321      11345567777888888


Q ss_pred             EEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccc
Q 048810          389 IHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSV  468 (582)
Q Consensus       389 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~  468 (582)
                      +++|.+..+|..+. ++|+.|+++.+..                   ....    +..+.. +++|+.|++++|......
T Consensus       178 l~~n~l~~l~~~~~-~~L~~L~l~~n~l-------------------~~~~----~~~~~~-l~~L~~L~Ls~n~l~~~~  232 (330)
T 1xku_A          178 IADTNITTIPQGLP-PSLTELHLDGNKI-------------------TKVD----AASLKG-LNNLAKLGLSFNSISAVD  232 (330)
T ss_dssp             CCSSCCCSCCSSCC-TTCSEEECTTSCC-------------------CEEC----TGGGTT-CTTCCEEECCSSCCCEEC
T ss_pred             CCCCccccCCcccc-ccCCEEECCCCcC-------------------CccC----HHHhcC-CCCCCEEECCCCcCceeC
Confidence            88887777766543 6677776643332                   0000    222333 377888888887644333


Q ss_pred             cccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccC---cccCCCccEEEEec
Q 048810          469 VHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLRE---DQSFSNLRIIEVEH  545 (582)
Q Consensus       469 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~---~~~~~~L~~L~l~~  545 (582)
                      +..+   +.+++|++|++++| .+..++.     ....+++|++|++++ ++++.++...+..   ....+.|+.|++++
T Consensus       233 ~~~~---~~l~~L~~L~L~~N-~l~~lp~-----~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~  302 (330)
T 1xku_A          233 NGSL---ANTPHLRELHLNNN-KLVKVPG-----GLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFS  302 (330)
T ss_dssp             TTTG---GGSTTCCEEECCSS-CCSSCCT-----TTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             hhhc---cCCCCCCEEECCCC-cCccCCh-----hhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeec
Confidence            3333   36788888888887 3444432     245678888888887 5677776554421   12357888999998


Q ss_pred             ccCcc-cccChhHHhhhhhcceeeeccC
Q 048810          546 CNKLK-HLFSFSMAKNLLWLQKVGVEEC  572 (582)
Q Consensus       546 c~~L~-~l~~~~~~~~l~~L~~L~i~~C  572 (582)
                      +|--. .+++ .....+++|+.++++++
T Consensus       303 N~~~~~~i~~-~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          303 NPVQYWEIQP-STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SSSCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred             CcccccccCc-cccccccceeEEEeccc
Confidence            86322 2333 34567888888888775

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.89  E-value=4.7e-23  Score=219.02  Aligned_cols=320  Identities=12%  Similarity=0.085  Sum_probs=190.7

Q ss_pred             HHHhhccCcEEEEecCCCCcCCCC--CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhccc
Q 048810          203 MEETIRKDPIAISLPYRGDQVLPQ--RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLI  280 (582)
Q Consensus       203 ~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~  280 (582)
                      .|...+.+++++++++|.+..++.  ...+++|++|++++|  ....+++..|.++++|++|++++|.++.+|..  .++
T Consensus        15 ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~   90 (520)
T 2z7x_B           15 VPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHN--RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTV   90 (520)
T ss_dssp             CCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS--CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCC
T ss_pred             ccccccccccEEECCCCcccccChhhccccccccEEecCCC--ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccC
Confidence            333334677777777777766653  236777777777776  44455445567777777777777777777765  677


Q ss_pred             CccEEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccchhhcCCCCC--CEEccccccc--ccccCcccccC-----
Q 048810          281 NLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRL--QLLDLSNCWT--LEVIAPNVISK-----  348 (582)
Q Consensus       281 ~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--l~~lp~~~l~~-----  348 (582)
                      +|++|++++|.++.   |..++++++|++|++++|.+..  ..+..+++|  ++|++++|..  ....|.. ++.     
T Consensus        91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~  167 (520)
T 2z7x_B           91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTES  167 (520)
T ss_dssp             CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEE
T ss_pred             CccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccccccce
Confidence            77777777777765   4667777777777777776654  223444444  5555555322  1111111 111     


Q ss_pred             ---------------------CC---------------------------------------------------------
Q 048810          349 ---------------------LS---------------------------------------------------------  350 (582)
Q Consensus       349 ---------------------l~---------------------------------------------------------  350 (582)
                                           ++                                                         
T Consensus       168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~  247 (520)
T 2z7x_B          168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT  247 (520)
T ss_dssp             EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred             EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence                                 22                                                         


Q ss_pred             cccEEEcCCCccccccccCCC-----------------------c-cchhh----------------------ccCCCCc
Q 048810          351 RLEELYMGNSFKRWEKVEGGS-----------------------N-ASLVE----------------------LNGLSKL  384 (582)
Q Consensus       351 ~L~~L~l~~~~~~~~~~~~~~-----------------------~-~~~~~----------------------l~~l~~L  384 (582)
                      +|++|++++|.+... ++...                       . .....                      ...+++|
T Consensus       248 ~L~~L~l~~n~l~~~-~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L  326 (520)
T 2z7x_B          248 TVWYFSISNVKLQGQ-LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF  326 (520)
T ss_dssp             SCSEEEEEEEEEESC-CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred             cccEEEeecccccCc-cccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcc
Confidence            222222222221100 00000                       0 00000                      1456667


Q ss_pred             cEEEEEeccccc-CCccc-ccccccEEEEEecccc-----ccccccccccccceecccceee-hccccchHHHhhhcccc
Q 048810          385 TTLEIHVRYAEI-LPQDL-VSVELQRYKMFIGEAR-----GRWFVKSETSRLMKLERLKSVS-ILLRNPGMRMLLQRTED  456 (582)
Q Consensus       385 ~~L~l~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~-~l~~~~~i~~~~~~L~~  456 (582)
                      +.|++++|.+.. .|..+ .+++|+.|+++.+...     +......+.++.+.+..+.-.. .   |......+++|+.
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l---~~~~~~~l~~L~~  403 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE---KKGDCSWTKSLLS  403 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG---GGCSCCCCTTCCE
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc---ccchhccCccCCE
Confidence            777777666654 34444 6677777777655541     1223455666666666654332 2   3332223489999


Q ss_pred             eeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCC
Q 048810          457 LWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFS  536 (582)
Q Consensus       457 L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~  536 (582)
                      |++++|......+..+     .++|++|++++| .++.++..     ...+++|+.|++++ ++++.++...   ...++
T Consensus       404 L~Ls~N~l~~~~~~~l-----~~~L~~L~Ls~N-~l~~ip~~-----~~~l~~L~~L~L~~-N~l~~l~~~~---~~~l~  468 (520)
T 2z7x_B          404 LNMSSNILTDTIFRCL-----PPRIKVLDLHSN-KIKSIPKQ-----VVKLEALQELNVAS-NQLKSVPDGI---FDRLT  468 (520)
T ss_dssp             EECCSSCCCGGGGGSC-----CTTCCEEECCSS-CCCCCCGG-----GGGCTTCCEEECCS-SCCCCCCTTT---TTTCT
T ss_pred             EECcCCCCCcchhhhh-----cccCCEEECCCC-cccccchh-----hhcCCCCCEEECCC-CcCCccCHHH---hccCC
Confidence            9999988655444322     279999999998 45566532     34789999999999 5788777642   45789


Q ss_pred             CccEEEEecccC
Q 048810          537 NLRIIEVEHCNK  548 (582)
Q Consensus       537 ~L~~L~l~~c~~  548 (582)
                      +|++|++++++-
T Consensus       469 ~L~~L~l~~N~~  480 (520)
T 2z7x_B          469 SLQKIWLHTNPW  480 (520)
T ss_dssp             TCCEEECCSSCB
T ss_pred             cccEEECcCCCC
Confidence            999999999853

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=1.9e-22  Score=200.41  Aligned_cols=230  Identities=23%  Similarity=0.303  Sum_probs=156.3

Q ss_pred             CCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEccc
Q 048810          255 GMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS  333 (582)
Q Consensus       255 ~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  333 (582)
                      ...++++|+++++.++.+|..++++++|++|++++|.++. |..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            4688999999999999999999999999999999999988 788999999999999999999999999999999999999


Q ss_pred             ccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc-ccccccEEEEE
Q 048810          334 NCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMF  412 (582)
Q Consensus       334 ~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~  412 (582)
                      +|+..+.+|.. ++.      ..                 ....+.++++|+.|++++|.+..+|..+ .+++|+.|+++
T Consensus       159 ~n~~~~~~p~~-~~~------~~-----------------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~  214 (328)
T 4fcg_A          159 ACPELTELPEP-LAS------TD-----------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR  214 (328)
T ss_dssp             EETTCCCCCSC-SEE------EC------------------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEE
T ss_pred             CCCCccccChh-Hhh------cc-----------------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEcc
Confidence            98888888875 332      00                 1122344555666666655555555444 44445555444


Q ss_pred             eccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCc
Q 048810          413 IGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEI  492 (582)
Q Consensus       413 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  492 (582)
                      .+.. .                    ..   |..+.. +++|+.|++++|......+..+   +.+++|++|++++|...
T Consensus       215 ~N~l-~--------------------~l---~~~l~~-l~~L~~L~Ls~n~~~~~~p~~~---~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          215 NSPL-S--------------------AL---GPAIHH-LPKLEELDLRGCTALRNYPPIF---GGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             SSCC-C--------------------CC---CGGGGG-CTTCCEEECTTCTTCCBCCCCT---TCCCCCCEEECTTCTTC
T ss_pred             CCCC-C--------------------cC---chhhcc-CCCCCEEECcCCcchhhhHHHh---cCCCCCCEEECCCCCch
Confidence            3332 0                    00   222222 2667777777766666555543   36777777777776655


Q ss_pred             eeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEec
Q 048810          493 LHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEH  545 (582)
Q Consensus       493 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~  545 (582)
                      ..++..     ...+++|+.|++++|+.+..+|..    .+.+++|+.+.+..
T Consensus       267 ~~~p~~-----~~~l~~L~~L~L~~n~~~~~iP~~----l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          267 LTLPLD-----IHRLTQLEKLDLRGCVNLSRLPSL----IAQLPANCIILVPP  310 (328)
T ss_dssp             CBCCTT-----GGGCTTCCEEECTTCTTCCCCCGG----GGGSCTTCEEECCG
T ss_pred             hhcchh-----hhcCCCCCEEeCCCCCchhhccHH----HhhccCceEEeCCH
Confidence            544322     345566666666666655555543    44566666665553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.88  E-value=1.2e-22  Score=217.82  Aligned_cols=352  Identities=13%  Similarity=0.015  Sum_probs=233.1

Q ss_pred             hhHHHHHhhccCcEEEEecCCCCcCCCC--CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhh
Q 048810          199 LEKKMEETIRKDPIAISLPYRGDQVLPQ--RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL  276 (582)
Q Consensus       199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i  276 (582)
                      .++.+|...+.++++|++++|.+..++.  ...+++|++|++++|  ....+++..|.++++|++|++++|.++.+|.. 
T Consensus        42 ~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-  118 (562)
T 3a79_B           42 NLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN--RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-  118 (562)
T ss_dssp             CCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC--CCCEECTTTTTTCTTCCEEECTTSCCCEECSC-
T ss_pred             CCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCC--CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-
Confidence            4445555556899999999999988874  338999999999998  55667666779999999999999999999977 


Q ss_pred             hcccCccEEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccchhhcCCCCC--CEEccccccc--ccccCcc-----
Q 048810          277 DRLINLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRL--QLLDLSNCWT--LEVIAPN-----  344 (582)
Q Consensus       277 ~~L~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--l~~lp~~-----  344 (582)
                       .+++|++|++++|+++.   |..++++++|++|++++|.+...  .+..+++|  ++|++++|..  ....|..     
T Consensus       119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~  195 (562)
T 3a79_B          119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN  195 (562)
T ss_dssp             -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred             -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccC
Confidence             89999999999999887   36899999999999999988752  34555666  9999988543  1222211     


Q ss_pred             --------------------cccCCCcccEEEcCCCccccccc-----------------------cC------------
Q 048810          345 --------------------VISKLSRLEELYMGNSFKRWEKV-----------------------EG------------  369 (582)
Q Consensus       345 --------------------~l~~l~~L~~L~l~~~~~~~~~~-----------------------~~------------  369 (582)
                                          .+..+++|+.|++++|.......                       .+            
T Consensus       196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~  275 (562)
T 3a79_B          196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP  275 (562)
T ss_dssp             EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT
T ss_pred             cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc
Confidence                                12234455555555542000000                       00            


Q ss_pred             -----------C-Cccchhhc-----cCCC--------------------------CccEEEEEecccccCCcccccccc
Q 048810          370 -----------G-SNASLVEL-----NGLS--------------------------KLTTLEIHVRYAEILPQDLVSVEL  406 (582)
Q Consensus       370 -----------~-~~~~~~~l-----~~l~--------------------------~L~~L~l~~~~~~~~~~~~~~~~L  406 (582)
                                 . .+..+..+     .+++                          +|+.|++++|.+...+....+++|
T Consensus       276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L  355 (562)
T 3a79_B          276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF  355 (562)
T ss_dssp             SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred             ccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCc
Confidence                       0 00011111     1111                          233333333333222211245677


Q ss_pred             cEEEEEeccc---cccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcE
Q 048810          407 QRYKMFIGEA---RGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKH  483 (582)
Q Consensus       407 ~~L~l~~~~~---~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~  483 (582)
                      +.|+++.+..   .+.+....+.++.+.+..+.--..-..|..+.. +++|+.|++++|......+...  ...+++|++
T Consensus       356 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~--~~~l~~L~~  432 (562)
T 3a79_B          356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-MSSLETLDVSLNSLNSHAYDRT--CAWAESILV  432 (562)
T ss_dssp             CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-CTTCCEEECTTSCCBSCCSSCC--CCCCTTCCE
T ss_pred             eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-CCCCCEEECCCCcCCCccChhh--hcCcccCCE
Confidence            7777766554   233455667777887776533221000122333 4899999999988655354432  347899999


Q ss_pred             EEEeecCCceeeecccccccCCCC-cccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhh
Q 048810          484 LYVESCSEILHIVGSVRRVGCEVF-PLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLL  562 (582)
Q Consensus       484 L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~  562 (582)
                      |++++|.-...+        ...+ ++|+.|++++ ++++.+|..    ...+++|+.|++++| +++.+|.. .+..++
T Consensus       433 L~l~~n~l~~~~--------~~~l~~~L~~L~L~~-N~l~~ip~~----~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~  497 (562)
T 3a79_B          433 LNLSSNMLTGSV--------FRCLPPKVKVLDLHN-NRIMSIPKD----VTHLQALQELNVASN-QLKSVPDG-VFDRLT  497 (562)
T ss_dssp             EECCSSCCCGGG--------GSSCCTTCSEEECCS-SCCCCCCTT----TTSSCCCSEEECCSS-CCCCCCTT-STTTCT
T ss_pred             EECCCCCCCcch--------hhhhcCcCCEEECCC-CcCcccChh----hcCCCCCCEEECCCC-CCCCCCHH-HHhcCC
Confidence            999998522211        2233 6999999999 478877764    447899999999998 68888863 367899


Q ss_pred             hcceeeeccCcc
Q 048810          563 WLQKVGVEECDE  574 (582)
Q Consensus       563 ~L~~L~i~~C~~  574 (582)
                      +|+.|++++++-
T Consensus       498 ~L~~L~l~~N~~  509 (562)
T 3a79_B          498 SLQYIWLHDNPW  509 (562)
T ss_dssp             TCCCEECCSCCB
T ss_pred             CCCEEEecCCCc
Confidence            999999988763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=2e-21  Score=201.86  Aligned_cols=278  Identities=14%  Similarity=0.071  Sum_probs=199.4

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT  284 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~  284 (582)
                      .....+++++++++|.+..++ ...+++|+.|+++++  ....++   ++.+++|++|++++|.++.+|  ++.+++|++
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N--~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~  131 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSN--KLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY  131 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS--CCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCC--CCceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence            556788999999999998875 558899999999987  344443   578999999999999998886  889999999


Q ss_pred             EEcCCCCCCCccccCCCCCccEEEeeCC-CCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccc
Q 048810          285 LCLDGCRLKDIAKVGQLKKLEVLSFRDS-DIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      |++++|+++.. .++.+++|++|++++| .+..+  .++.+++|++|++++ +.++.+|   ++.+++|+.|++++|.+.
T Consensus       132 L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~l~---l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          132 LNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF-NKITELD---VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             EECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS-SCCCCCC---CTTCTTCCEEECCSSCCS
T ss_pred             EECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC-Cccceec---cccCCCCCEEECcCCcCC
Confidence            99999998885 3888899999999998 55566  377889999999998 4677776   678899999999888654


Q ss_pred             cccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccc----------cceec
Q 048810          364 WEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSR----------LMKLE  433 (582)
Q Consensus       364 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~----------~l~l~  433 (582)
                      ..           .++.+++|+.|++++|.+..+| ...+++|+.|+++.+..........+.++          .+.+.
T Consensus       205 ~~-----------~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~  272 (457)
T 3bz5_A          205 KL-----------DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLT  272 (457)
T ss_dssp             CC-----------CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred             ee-----------ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECC
Confidence            32           3777888999999988888876 33778888888876654111122233333          33333


Q ss_pred             ccceeehccccchHHHhhhcccceeeccccCccccccc------ccCCCCCCCCcEEEEeecCCceeeecccccccCCCC
Q 048810          434 RLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHE------LDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVF  507 (582)
Q Consensus       434 ~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~------~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  507 (582)
                      .+.....+  |  . ..+++|+.|++++|...+.++..      +. ++.+++|++|++++|. ++.+       ....+
T Consensus       273 ~n~~~~~~--~--~-~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~-l~~~~~L~~L~L~~N~-l~~l-------~l~~l  338 (457)
T 3bz5_A          273 HNTQLIYF--Q--A-EGCRKIKELDVTHNTQLYLLDCQAAGITELD-LSQNPKLVYLYLNNTE-LTEL-------DVSHN  338 (457)
T ss_dssp             TCTTCCEE--E--C-TTCTTCCCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCCEEECTTCC-CSCC-------CCTTC
T ss_pred             CCccCCcc--c--c-cccccCCEEECCCCcccceeccCCCcceEec-hhhcccCCEEECCCCc-cccc-------ccccC
Confidence            33222211  2  1 22489999999999876665432      11 3456677777776663 3322       35677


Q ss_pred             ccccccccccccccccc
Q 048810          508 PLLETLYLIGLANLETI  524 (582)
Q Consensus       508 ~~L~~L~l~~~~~L~~~  524 (582)
                      ++|+.|++++ ++++.+
T Consensus       339 ~~L~~L~l~~-N~l~~l  354 (457)
T 3bz5_A          339 TKLKSLSCVN-AHIQDF  354 (457)
T ss_dssp             TTCSEEECCS-SCCCBC
T ss_pred             CcCcEEECCC-CCCCCc
Confidence            8899998877 455443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=2.1e-21  Score=193.67  Aligned_cols=291  Identities=15%  Similarity=0.152  Sum_probs=210.5

Q ss_pred             ccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEE
Q 048810          208 RKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLC  286 (582)
Q Consensus       208 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~  286 (582)
                      ..+++.++++++.+..+|... .++++.|+++++  ....++...|..+++|++|++++|.++.+ |..++.+++|++|+
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSC-CTTCCEEECCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCCeEEEecCCCccccCccC-CCCCeEEECCCC--cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            346788999999988888755 378999999987  56667776678999999999999999886 78899999999999


Q ss_pred             cCCCCCCC-ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccc--cCcccccCCCcccEEEcCCCcc
Q 048810          287 LDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEV--IAPNVISKLSRLEELYMGNSFK  362 (582)
Q Consensus       287 L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~  362 (582)
                      +++|.++. |..+.  ++|++|++++|.+..++.. +.++++|++|++++| .+..  ..+..+..+++|++|++++|.+
T Consensus       107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          107 LSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCcc
Confidence            99999888 55554  7999999999999987664 789999999999985 4432  3334488899999999999875


Q ss_pred             ccccccCCCccchhhccCCCCccEEEEEecccccCCc-cc-ccccccEEEEEeccccccccccccccccceecccceeeh
Q 048810          363 RWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQ-DL-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSI  440 (582)
Q Consensus       363 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~  440 (582)
                      ...         +..+.  ++|+.|++++|.+..++. .+ .+++|+.|+++.+.. .                  ... 
T Consensus       184 ~~l---------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~------------------~~~-  232 (330)
T 1xku_A          184 TTI---------PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-S------------------AVD-  232 (330)
T ss_dssp             CSC---------CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC-C------------------EEC-
T ss_pred             ccC---------Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC-c------------------eeC-
Confidence            432         22222  789999999998887643 34 778888888765543 0                  000 


Q ss_pred             ccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccc--cCCCCccccccccccc
Q 048810          441 LLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRV--GCEVFPLLETLYLIGL  518 (582)
Q Consensus       441 l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~~  518 (582)
                         +.++.. +++|+.|++++|.. +.++..+   ..+++|++|++++|. ++.++...+..  ....++.|+.|++.+ 
T Consensus       233 ---~~~~~~-l~~L~~L~L~~N~l-~~lp~~l---~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~-  302 (330)
T 1xku_A          233 ---NGSLAN-TPHLRELHLNNNKL-VKVPGGL---ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFS-  302 (330)
T ss_dssp             ---TTTGGG-STTCCEEECCSSCC-SSCCTTT---TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCS-
T ss_pred             ---hhhccC-CCCCCEEECCCCcC-ccCChhh---ccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeec-
Confidence               223333 48999999999874 4555554   489999999999984 56555432211  122357889999987 


Q ss_pred             ccccccccccccCcccCCCccEEEEecc
Q 048810          519 ANLETICCSQLREDQSFSNLRIIEVEHC  546 (582)
Q Consensus       519 ~~L~~~~~~~~~~~~~~~~L~~L~l~~c  546 (582)
                      +.+..+...+- ....+++|+.++++++
T Consensus       303 N~~~~~~i~~~-~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          303 NPVQYWEIQPS-TFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SSSCGGGSCGG-GGTTCCCGGGEEC---
T ss_pred             CcccccccCcc-ccccccceeEEEeccc
Confidence            44444322111 1457788999988875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=1e-21  Score=197.71  Aligned_cols=190  Identities=18%  Similarity=0.166  Sum_probs=124.8

Q ss_pred             EEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCC
Q 048810          213 AISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCR  291 (582)
Q Consensus       213 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~  291 (582)
                      ..+.+++.+..+|.... ++|+.|+++++  ....++...|.++++|++|++++|.++.+ |..++++++|++|++++|+
T Consensus        35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNN--RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             EEECCSTTCSSCCTTCC-TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeeCCCCCccccccccc-ccCcEEECCCC--cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence            36667777777776442 46777777766  44456655567777777777777777664 3457777777777777777


Q ss_pred             CCC-ccc-cCCCCCccEEEeeCCCCCccch--hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810          292 LKD-IAK-VGQLKKLEVLSFRDSDIEQLPL--EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV  367 (582)
Q Consensus       292 l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (582)
                      ++. +.. ++.+++|++|++++|.++.+|.  .++.+++|++|++++|..++.+++..++.+++|++|++++|.+...  
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--  189 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY--  189 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc--
Confidence            776 333 6777777777777777777765  5667777777777776556666555567777777777777655433  


Q ss_pred             cCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEe
Q 048810          368 EGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFI  413 (582)
Q Consensus       368 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~  413 (582)
                            .+..+.++++|+.|++++|.+..++...  .+++|+.|+++.
T Consensus       190 ------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  231 (353)
T 2z80_A          190 ------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD  231 (353)
T ss_dssp             ------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES
T ss_pred             ------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC
Confidence                  3455666777777777766665544433  344555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=1.6e-21  Score=194.69  Aligned_cols=288  Identities=16%  Similarity=0.173  Sum_probs=205.7

Q ss_pred             cCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEc
Q 048810          209 KDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCL  287 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L  287 (582)
                      ..++.++++++.+..+|... .++++.|+++++  ....+++..|..+++|++|++++|.++.+ |..++.+++|++|++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNN--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC-CTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             ccCCEEECCCCCccccCCCC-CCCCeEEECCCC--cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            35788899999988888765 478999999987  45566666678999999999999999885 678999999999999


Q ss_pred             CCCCCCC-ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccc--cCcccccCCCcccEEEcCCCccc
Q 048810          288 DGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEV--IAPNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       288 ~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      ++|.++. |..+.  ++|++|++++|.+..+|.. +..+++|++|++++| .++.  .++..++.+ +|++|++++|.+.
T Consensus       110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            9999888 55554  8999999999999988765 788999999999985 4432  333446677 8999999988754


Q ss_pred             cccccCCCccchhhccCCCCccEEEEEecccccCCcc-c-ccccccEEEEEeccccccccccccccccceecccceeehc
Q 048810          364 WEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD-L-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSIL  441 (582)
Q Consensus       364 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l  441 (582)
                      ..         +..+.  ++|+.|++++|.+..++.. + .+++|+.|+++.+..                     ... 
T Consensus       186 ~l---------~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l---------------------~~~-  232 (332)
T 2ft3_A          186 GI---------PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI---------------------RMI-  232 (332)
T ss_dssp             SC---------CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC---------------------CCC-
T ss_pred             cc---------Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC---------------------CcC-
Confidence            32         22222  6889999999988877643 3 677787777654433                     000 


Q ss_pred             cccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccc--cCCCCcccccccccccc
Q 048810          442 LRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRV--GCEVFPLLETLYLIGLA  519 (582)
Q Consensus       442 ~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~  519 (582)
                       .+.++.. +++|+.|++++|.. +.++..+.   .+++|++|+++++. ++.++...+..  ....++.|+.|++.+.+
T Consensus       233 -~~~~~~~-l~~L~~L~L~~N~l-~~lp~~l~---~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          233 -ENGSLSF-LPTLRELHLDNNKL-SRVPAGLP---DLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             -CTTGGGG-CTTCCEEECCSSCC-CBCCTTGG---GCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             -ChhHhhC-CCCCCEEECCCCcC-eecChhhh---cCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCc
Confidence             0223333 48999999998874 45665543   79999999999874 55554332211  12236889999999844


Q ss_pred             cccc--cccccccCcccCCCccEEEEeccc
Q 048810          520 NLET--ICCSQLREDQSFSNLRIIEVEHCN  547 (582)
Q Consensus       520 ~L~~--~~~~~~~~~~~~~~L~~L~l~~c~  547 (582)
                       +..  ++...   ...+++|+.+++++|.
T Consensus       306 -~~~~~~~~~~---~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          306 -VPYWEVQPAT---FRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             -SCGGGSCGGG---GTTBCCSTTEEC----
T ss_pred             -ccccccCccc---ccccchhhhhhccccc
Confidence             442  22222   4578899999998874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=5.8e-21  Score=208.07  Aligned_cols=344  Identities=16%  Similarity=0.113  Sum_probs=226.2

Q ss_pred             EEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCC
Q 048810          213 AISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCR  291 (582)
Q Consensus       213 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~  291 (582)
                      ..+-++.++..+|..+. ++++.|++++|  ....+++..|.++++|++|+|++|.++.+|+ .+++|++|++|+|++|+
T Consensus        35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N--~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLP-FSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCSSCCSSSC-TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcCccCCCCC-cCCCEEEeeCC--CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            34455566778887552 47999999998  6778888888999999999999999999765 68999999999999999


Q ss_pred             CCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccC-cccccCCCcccEEEcCCCccccccc
Q 048810          292 LKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIA-PNVISKLSRLEELYMGNSFKRWEKV  367 (582)
Q Consensus       292 l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp-~~~l~~l~~L~~L~l~~~~~~~~~~  367 (582)
                      ++. | ..+.++++|++|++++|+++.+|.. ++++++|++|++++| .+..++ +..++.+++|++|++++|.+.....
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcccccccc
Confidence            998 4 5689999999999999999999875 899999999999995 555432 2347899999999999986432100


Q ss_pred             cC-----------------------------------------CCcc---------------------------------
Q 048810          368 EG-----------------------------------------GSNA---------------------------------  373 (582)
Q Consensus       368 ~~-----------------------------------------~~~~---------------------------------  373 (582)
                      ..                                         ....                                 
T Consensus       191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~  270 (635)
T 4g8a_A          191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF  270 (635)
T ss_dssp             GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence            00                                         0000                                 


Q ss_pred             -------------------------------------------------chhhccCCCCccEEEEEecccccCC------
Q 048810          374 -------------------------------------------------SLVELNGLSKLTTLEIHVRYAEILP------  398 (582)
Q Consensus       374 -------------------------------------------------~~~~l~~l~~L~~L~l~~~~~~~~~------  398 (582)
                                                                       ....+....+|+.|++..+.+..++      
T Consensus       271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  350 (635)
T 4g8a_A          271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS  350 (635)
T ss_dssp             CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTT
T ss_pred             cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchh
Confidence                                                             0001112224445555444332221      


Q ss_pred             ---------------cccccccccEEEEEecccc-----ccccccccccccceecccceeeh------------c-----
Q 048810          399 ---------------QDLVSVELQRYKMFIGEAR-----GRWFVKSETSRLMKLERLKSVSI------------L-----  441 (582)
Q Consensus       399 ---------------~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~~------------l-----  441 (582)
                                     ....+++|+.++++.+...     .........++.+.+........            +     
T Consensus       351 L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~  430 (635)
T 4g8a_A          351 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS  430 (635)
T ss_dssp             CCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTS
T ss_pred             hhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhc
Confidence                           1124567888877654431     11111222333333322211111            0     


Q ss_pred             ----cccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccc
Q 048810          442 ----LRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIG  517 (582)
Q Consensus       442 ----~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~  517 (582)
                          ..+......+++++.++++.+......+..   ...+++|++|++++|.....+...    ....+++|+.|++++
T Consensus       431 ~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~---~~~~~~L~~L~Ls~N~~~~~~~~~----~~~~l~~L~~L~Ls~  503 (635)
T 4g8a_A          431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQ  503 (635)
T ss_dssp             EEESTTSSCTTTTCTTCCEEECTTSCCEECCTTT---TTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccc---cccchhhhhhhhhhcccccccCch----hhhhccccCEEECCC
Confidence                001111111245556666655533333333   346788899998887654443322    456788999999998


Q ss_pred             cccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810          518 LANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD  573 (582)
Q Consensus       518 ~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~  573 (582)
                       .+++.++...   .+.+++|++|++++| +++.+++. .+..+++|+.|+++++.
T Consensus       504 -N~L~~l~~~~---f~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          504 -CQLEQLSPTA---FNSLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             -SCCCEECTTT---TTTCTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSC
T ss_pred             -CccCCcChHH---HcCCCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCc
Confidence             4677775543   457899999999998 78888764 45789999999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=1.2e-21  Score=193.64  Aligned_cols=245  Identities=14%  Similarity=0.106  Sum_probs=147.2

Q ss_pred             cCcEEEEecCCCCc---CCCCCC-CCCCccEEEeec-cCccccccChHHhcCCCCccEEEcCCCCCC-CCChhhhcccCc
Q 048810          209 KDPIAISLPYRGDQ---VLPQRM-RCPRLGLFLLHT-IGLCSIQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLDRLINL  282 (582)
Q Consensus       209 ~~~~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~L~~L  282 (582)
                      .+++.++++++.+.   .+|..+ .+++|++|++++ + .....+|.. |..+++|++|++++|.++ .+|..++.+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-NLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET-TEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC-cccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            46777777777765   355444 666677777664 3 233344444 366666777777666665 466666666677


Q ss_pred             cEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCC-ccchhhcCCC-CCCEEcccccccccccCcccccCCCcccEEEcC
Q 048810          283 QTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLR-RLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG  358 (582)
Q Consensus       283 ~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~  358 (582)
                      ++|++++|.++.  |..++.+++|++|++++|.++ .+|..++.++ +|++|++++|...+.+|.. ++.++ |+.|+++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS  205 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence            777776666663  556666666777777666666 6666666665 6666666664322244443 55555 6666666


Q ss_pred             CCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceeccccee
Q 048810          359 NSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSV  438 (582)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~  438 (582)
                      +|.+...        .+..+..+++|+.|++++|.+...+..                                      
T Consensus       206 ~N~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------------------------  239 (313)
T 1ogq_A          206 RNMLEGD--------ASVLFGSDKNTQKIHLAKNSLAFDLGK--------------------------------------  239 (313)
T ss_dssp             SSEEEEC--------CGGGCCTTSCCSEEECCSSEECCBGGG--------------------------------------
T ss_pred             CCcccCc--------CCHHHhcCCCCCEEECCCCceeeecCc--------------------------------------
Confidence            6654433        344556666666666665544321110                                      


Q ss_pred             ehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccccc
Q 048810          439 SILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGL  518 (582)
Q Consensus       439 ~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~  518 (582)
                              +. .+++|++|++++|......+..+.   .+++|++|++++|.-...+|      ....+++|+.|++.+.
T Consensus       240 --------~~-~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~ip------~~~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          240 --------VG-LSKNLNGLDLRNNRIYGTLPQGLT---QLKFLHSLNVSFNNLCGEIP------QGGNLQRFDVSAYANN  301 (313)
T ss_dssp             --------CC-CCTTCCEEECCSSCCEECCCGGGG---GCTTCCEEECCSSEEEEECC------CSTTGGGSCGGGTCSS
T ss_pred             --------cc-ccCCCCEEECcCCcccCcCChHHh---cCcCCCEEECcCCcccccCC------CCccccccChHHhcCC
Confidence                    11 136777888877775545555543   77888888888874322333      2356777888887775


Q ss_pred             ccc
Q 048810          519 ANL  521 (582)
Q Consensus       519 ~~L  521 (582)
                      +.+
T Consensus       302 ~~l  304 (313)
T 1ogq_A          302 KCL  304 (313)
T ss_dssp             SEE
T ss_pred             CCc
Confidence            444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=1.9e-21  Score=193.27  Aligned_cols=219  Identities=21%  Similarity=0.266  Sum_probs=160.9

Q ss_pred             hccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEE
Q 048810          207 IRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTL  285 (582)
Q Consensus       207 ~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L  285 (582)
                      ...+++.|+++++.+..+|..+ .+++|++|+++++  ....+|..+ ..+++|++|++++|.++.+|..++.+++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n--~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA--GLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS--CCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCC--CccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence            3468899999999998888765 7888888888887  333666554 77888888888888888888888888888888


Q ss_pred             EcCCCCCCC--ccccC---------CCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccE
Q 048810          286 CLDGCRLKD--IAKVG---------QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEE  354 (582)
Q Consensus       286 ~L~~~~l~~--~~~~~---------~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~  354 (582)
                      ++++|++..  |..++         .+++|++|++++|.++.+|..++++++|++|++++ +.+..+|+. ++.+++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCE
Confidence            888876554  55544         38888888888888888888888888888888888 456677775 788888888


Q ss_pred             EEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc-cCCcccccccccEEEEEeccccccccccccccccceec
Q 048810          355 LYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE-ILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLE  433 (582)
Q Consensus       355 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~  433 (582)
                      |++++|.....        .+..++.+++|+.|++++|... .+                                    
T Consensus       234 L~Ls~n~~~~~--------~p~~~~~l~~L~~L~L~~n~~~~~~------------------------------------  269 (328)
T 4fcg_A          234 LDLRGCTALRN--------YPPIFGGRAPLKRLILKDCSNLLTL------------------------------------  269 (328)
T ss_dssp             EECTTCTTCCB--------CCCCTTCCCCCCEEECTTCTTCCBC------------------------------------
T ss_pred             EECcCCcchhh--------hHHHhcCCCCCCEEECCCCCchhhc------------------------------------
Confidence            88888765444        4556667777777777655332 11                                    


Q ss_pred             ccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEee
Q 048810          434 RLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVES  488 (582)
Q Consensus       434 ~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  488 (582)
                                |.++.. +++|+.|+|++|...+.+|..+.   .+++|+.+.+..
T Consensus       270 ----------p~~~~~-l~~L~~L~L~~n~~~~~iP~~l~---~L~~L~~l~l~~  310 (328)
T 4fcg_A          270 ----------PLDIHR-LTQLEKLDLRGCVNLSRLPSLIA---QLPANCIILVPP  310 (328)
T ss_dssp             ----------CTTGGG-CTTCCEEECTTCTTCCCCCGGGG---GSCTTCEEECCG
T ss_pred             ----------chhhhc-CCCCCEEeCCCCCchhhccHHHh---hccCceEEeCCH
Confidence                      222322 36777777777777676666644   677777776654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=5.1e-21  Score=198.58  Aligned_cols=178  Identities=22%  Similarity=0.182  Sum_probs=102.8

Q ss_pred             ccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEc
Q 048810          208 RKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCL  287 (582)
Q Consensus       208 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L  287 (582)
                      +.+++.+++++|.+..+|..  .++|+.|+++++  ....++.    ..++|++|++++|.++.+| .++++++|++|++
T Consensus        90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n--~l~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l  160 (454)
T 1jl5_A           90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNN--NLKALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV  160 (454)
T ss_dssp             CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSS--CCSCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred             cCCCCEEEccCCcCCccccc--cCCCcEEECCCC--ccCcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence            35666777777766666543  356666666665  2222221    1256666666666666666 4666666666666


Q ss_pred             CCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccc
Q 048810          288 DGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK  366 (582)
Q Consensus       288 ~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~  366 (582)
                      ++|+++. |..   ..+|++|++++|.++.+| .++.+++|++|++++ +.+..+|..    .++|++|++++|.+..  
T Consensus       161 ~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~-N~l~~l~~~----~~~L~~L~l~~n~l~~--  229 (454)
T 1jl5_A          161 DNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN-NSLKKLPDL----PLSLESIVAGNNILEE--  229 (454)
T ss_dssp             CSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-SCCSSCCCC----CTTCCEEECCSSCCSS--
T ss_pred             CCCcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCC-CcCCcCCCC----cCcccEEECcCCcCCc--
Confidence            6666665 322   236666666666666665 466666666666666 344445431    2466666666664431  


Q ss_pred             ccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEecc
Q 048810          367 VEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGE  415 (582)
Q Consensus       367 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  415 (582)
                              +..++.+++|+.|++++|.+..+|..  .++|+.|+++.+.
T Consensus       230 --------lp~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~  268 (454)
T 1jl5_A          230 --------LPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNY  268 (454)
T ss_dssp             --------CCCCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSC
T ss_pred             --------ccccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCc
Confidence                    11355666666666666666655542  3556666665444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=2.2e-20  Score=193.74  Aligned_cols=311  Identities=16%  Similarity=0.093  Sum_probs=203.8

Q ss_pred             cCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcC
Q 048810          209 KDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLD  288 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~  288 (582)
                      .++++++++++.+..+|..  .++|+.|+++++  ....+|.    .+++|++|++++|.++.+|...   ++|++|+++
T Consensus        71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n--~l~~lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~  139 (454)
T 1jl5_A           71 RQAHELELNNLGLSSLPEL--PPHLESLVASCN--SLTELPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVS  139 (454)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSS--CCSSCCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECC
T ss_pred             cCCCEEEecCCccccCCCC--cCCCCEEEccCC--cCCcccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECc
Confidence            5678999999999888873  479999999987  3444664    3589999999999998877532   689999999


Q ss_pred             CCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccccc
Q 048810          289 GCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVE  368 (582)
Q Consensus       289 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~  368 (582)
                      +|.++..+.++++++|++|++++|.++.+|..   ..+|++|++++ +.+..+|.  ++.+++|++|++++|.+...   
T Consensus       140 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~-n~l~~l~~--~~~l~~L~~L~l~~N~l~~l---  210 (454)
T 1jl5_A          140 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGN-NQLEELPE--LQNLPFLTAIYADNNSLKKL---  210 (454)
T ss_dssp             SSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSSCCC--CTTCTTCCEEECCSSCCSSC---
T ss_pred             CCCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcC-CcCCcCcc--ccCCCCCCEEECCCCcCCcC---
Confidence            99999944799999999999999999998864   35999999999 46777874  89999999999999875432   


Q ss_pred             CCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHH
Q 048810          369 GGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMR  448 (582)
Q Consensus       369 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~  448 (582)
                            +.   ..++|+.|++++|.+..+|....+++|+.|+++.+.. .........++.+.+..+.-...   |..  
T Consensus       211 ------~~---~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L~l~~N~l~~l---~~~--  275 (454)
T 1jl5_A          211 ------PD---LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTDL---PEL--  275 (454)
T ss_dssp             ------CC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC-SSCCSCCTTCCEEECCSSCCSCC---CCC--
T ss_pred             ------CC---CcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcC-CcccccccccCEEECCCCccccc---Ccc--
Confidence                  11   1258999999999999888644889999999987665 22223345667777665532222   322  


Q ss_pred             HhhhcccceeeccccCccccccc---cc----------CCCCC-CCCcEEEEeecCCceeeecccccccCCCCccccccc
Q 048810          449 MLLQRTEDLWLETLEGVPSVVHE---LD----------DGEGF-PRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLY  514 (582)
Q Consensus       449 ~~~~~L~~L~L~~~~~~~~~~~~---~~----------~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~  514 (582)
                        +++|+.|++++|.. +.++..   +.          .+..+ ++|++|++++|. +..++        ..+++|+.|+
T Consensus       276 --~~~L~~L~ls~N~l-~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~lp--------~~~~~L~~L~  343 (454)
T 1jl5_A          276 --PQSLTFLDVSENIF-SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELP--------ALPPRLERLI  343 (454)
T ss_dssp             --CTTCCEEECCSSCC-SEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEE
T ss_pred             --cCcCCEEECcCCcc-CcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-ccccc--------ccCCcCCEEE
Confidence              36777777777653 222110   00          00012 345555555442 22221        2256777777


Q ss_pred             ccccccccccccccccCcccCCCccEEEEecccCcccccCh-hHHhhh-------------hhcceeeeccCcch
Q 048810          515 LIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSF-SMAKNL-------------LWLQKVGVEECDEL  575 (582)
Q Consensus       515 l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~-~~~~~l-------------~~L~~L~i~~C~~L  575 (582)
                      +++ ++++.++.       .+++|+.|++++| ++..+|.. ..+.++             ++|+.|++++++--
T Consensus       344 L~~-N~l~~lp~-------~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          344 ASF-NHLAEVPE-------LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             CCS-SCCSCCCC-------CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC-----------------------
T ss_pred             CCC-Cccccccc-------hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence            776 34554432       3577888888877 34442210 123344             77888888876543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=4.4e-21  Score=189.43  Aligned_cols=128  Identities=22%  Similarity=0.290  Sum_probs=62.7

Q ss_pred             CccEEEcCCCCCC---CCChhhhcccCccEEEcCC-CCCCC--ccccCCCCCccEEEeeCCCCC-ccchhhcCCCCCCEE
Q 048810          258 GLKVLQFPGIGSS---SLPSSLDRLINLQTLCLDG-CRLKD--IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQLL  330 (582)
Q Consensus       258 ~Lr~L~l~~~~~~---~lp~~i~~L~~L~~L~L~~-~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L  330 (582)
                      +++.|+++++.++   .+|..++++++|++|++++ |.+..  |..++++++|++|++++|.+. .+|..++++++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            4555555555554   2455555555555555553 44443  444555555555555555554 445555555555555


Q ss_pred             cccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCC-CccEEEEEeccc
Q 048810          331 DLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLS-KLTTLEIHVRYA  394 (582)
Q Consensus       331 ~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~  394 (582)
                      ++++|...+.+|.. ++.+++|++|++++|.+...        .+..+..+. +|+.|++++|.+
T Consensus       131 ~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~--------~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          131 DFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGA--------IPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEE--------CCGGGGCCCTTCCEEECCSSEE
T ss_pred             eCCCCccCCcCChH-HhcCCCCCeEECcCCcccCc--------CCHHHhhhhhcCcEEECcCCee
Confidence            55553222233333 45555555555555544322        234444444 555555554443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=1.2e-19  Score=194.05  Aligned_cols=260  Identities=18%  Similarity=0.120  Sum_probs=201.4

Q ss_pred             ccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEc
Q 048810          208 RKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCL  287 (582)
Q Consensus       208 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L  287 (582)
                      ..+++.++++++.+..+|.... ++|+.|++++|  ....+|.    .+++|++|++++|.++.+|.   .+++|++|++
T Consensus        39 ~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N--~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           39 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDN--NLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI  108 (622)
T ss_dssp             HHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSC--CCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred             CCCCcEEEecCCCcCccChhhC-CCCcEEEecCC--CCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence            4568999999999999988665 89999999988  4556665    57899999999999999997   7789999999


Q ss_pred             CCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810          288 DGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV  367 (582)
Q Consensus       288 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (582)
                      ++|.++..+.  .+.+|++|++++|.++.+|..   +++|++|++++| .++.+|.    .+++|+.|++++|.+...  
T Consensus       109 s~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l--  176 (622)
T 3g06_A          109 FSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSL--  176 (622)
T ss_dssp             CSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC--
T ss_pred             cCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCC--
Confidence            9999998433  678999999999999999874   589999999994 6777764    357899999999876443  


Q ss_pred             cCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchH
Q 048810          368 EGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGM  447 (582)
Q Consensus       368 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i  447 (582)
                             +   ..+++|+.|++++|.+..+|..  .++|+.|.+..+.. .                    ..   |.  
T Consensus       177 -------~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l-~--------------------~l---~~--  218 (622)
T 3g06_A          177 -------P---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRL-T--------------------SL---PA--  218 (622)
T ss_dssp             -------C---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCC-S--------------------SC---CC--
T ss_pred             -------c---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcc-c--------------------cc---CC--
Confidence                   2   4568899999999998887764  46777777654432 0                    00   21  


Q ss_pred             HHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccc
Q 048810          448 RMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCS  527 (582)
Q Consensus       448 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~  527 (582)
                        .+++|+.|++++|. ++.++      ..+++|++|++++| .++.++       . .+++|+.|++++ ++++.+|..
T Consensus       219 --~~~~L~~L~Ls~N~-L~~lp------~~l~~L~~L~Ls~N-~L~~lp-------~-~~~~L~~L~Ls~-N~L~~lp~~  279 (622)
T 3g06_A          219 --LPSGLKELIVSGNR-LTSLP------VLPSELKELMVSGN-RLTSLP-------M-LPSGLLSLSVYR-NQLTRLPES  279 (622)
T ss_dssp             --CCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSS-CCSCCC-------C-CCTTCCEEECCS-SCCCSCCGG
T ss_pred             --CCCCCCEEEccCCc-cCcCC------CCCCcCcEEECCCC-CCCcCC-------c-ccccCcEEeCCC-CCCCcCCHH
Confidence              13789999998875 44444      25789999999988 455554       1 568899999988 477777643


Q ss_pred             cccCcccCCCccEEEEecccCccc
Q 048810          528 QLREDQSFSNLRIIEVEHCNKLKH  551 (582)
Q Consensus       528 ~~~~~~~~~~L~~L~l~~c~~L~~  551 (582)
                          ...+++|+.|++++|+ +..
T Consensus       280 ----l~~l~~L~~L~L~~N~-l~~  298 (622)
T 3g06_A          280 ----LIHLSSETTVNLEGNP-LSE  298 (622)
T ss_dssp             ----GGGSCTTCEEECCSCC-CCH
T ss_pred             ----HhhccccCEEEecCCC-CCC
Confidence                5678999999999985 443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=189.34  Aligned_cols=259  Identities=14%  Similarity=0.153  Sum_probs=195.2

Q ss_pred             hhhHHHHHhhccCcEEEEecCCCCcCCCC--CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh
Q 048810          198 DLEKKMEETIRKDPIAISLPYRGDQVLPQ--RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS  275 (582)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~  275 (582)
                      ..++..|.....++++|++++|.+..++.  ...+++|+.|+++++  ....+++..|.++++|++|++++|.++.+|..
T Consensus        41 ~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  118 (353)
T 2z80_A           41 GSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN--GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS  118 (353)
T ss_dssp             TTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred             CCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC--ccCccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence            34445555556799999999999988876  338999999999987  55567666679999999999999999998876


Q ss_pred             -hhcccCccEEEcCCCCCCC-cc--ccCCCCCccEEEeeCC-CCCccc-hhhcCCCCCCEEcccccccccccCcccccCC
Q 048810          276 -LDRLINLQTLCLDGCRLKD-IA--KVGQLKKLEVLSFRDS-DIEQLP-LEIGQLRRLQLLDLSNCWTLEVIAPNVISKL  349 (582)
Q Consensus       276 -i~~L~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~l~~~-~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l  349 (582)
                       ++.+++|++|++++|+++. +.  .+..+++|++|++++| .+..++ ..++.+++|++|++++| .+..+++..++.+
T Consensus       119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l  197 (353)
T 2z80_A          119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSI  197 (353)
T ss_dssp             HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTC
T ss_pred             HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhcc
Confidence             8999999999999999998 44  6899999999999999 577764 56899999999999995 5666644558999


Q ss_pred             CcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc-----ccccccEEEEEeccccccccccc
Q 048810          350 SRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL-----VSVELQRYKMFIGEARGRWFVKS  424 (582)
Q Consensus       350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~  424 (582)
                      ++|++|++++|.....        ....+..+++|+.|++++|.+..++...     ....++.+++....         
T Consensus       198 ~~L~~L~l~~n~l~~~--------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~---------  260 (353)
T 2z80_A          198 QNVSHLILHMKQHILL--------LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK---------  260 (353)
T ss_dssp             SEEEEEEEECSCSTTH--------HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB---------
T ss_pred             ccCCeecCCCCccccc--------hhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc---------
Confidence            9999999999875433        1223456899999999999888765331     23445555543222         


Q ss_pred             cccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecC
Q 048810          425 ETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCS  490 (582)
Q Consensus       425 ~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  490 (582)
                             +........   |.++.. +++|+.|++++|.. +.++..+  ++.+++|++|++++|+
T Consensus       261 -------l~~~~l~~l---~~~l~~-l~~L~~L~Ls~N~l-~~i~~~~--~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          261 -------ITDESLFQV---MKLLNQ-ISGLLELEFSRNQL-KSVPDGI--FDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             -------CCHHHHHHH---HHHHHT-CTTCCEEECCSSCC-CCCCTTT--TTTCTTCCEEECCSSC
T ss_pred             -------ccCcchhhh---HHHHhc-ccCCCEEECCCCCC-CccCHHH--HhcCCCCCEEEeeCCC
Confidence                   111111112   444544 37899999998864 4555443  3478999999998885

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.83  E-value=2.2e-20  Score=182.08  Aligned_cols=204  Identities=21%  Similarity=0.269  Sum_probs=131.3

Q ss_pred             hHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCC-CCCC-Chh
Q 048810          200 EKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIG-SSSL-PSS  275 (582)
Q Consensus       200 ~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p~~  275 (582)
                      +..+|...+.++++++++++.+..++..  ..+++|+.|+++++  ....+....|..+++|++|++++|. ++.+ |..
T Consensus        23 l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~  100 (285)
T 1ozn_A           23 LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN--VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT  100 (285)
T ss_dssp             CSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             cccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC--ccceeCHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence            3334444456677777777777666542  26677777777765  3444444455677777777777775 6665 556


Q ss_pred             hhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810          276 LDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL  352 (582)
Q Consensus       276 i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L  352 (582)
                      +..+++|++|++++|.++.  +..+..+++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+|...+..+++|
T Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSL  179 (285)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTC
T ss_pred             hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCcccc
Confidence            6777777777777777666  35566777777777777777766654 56677777777777 45666666556677777


Q ss_pred             cEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEec
Q 048810          353 EELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIG  414 (582)
Q Consensus       353 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~  414 (582)
                      ++|++++|.+...        .+..+.++++|+.|++++|.+..++...  .+++|+.|++..+
T Consensus       180 ~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          180 DRLLLHQNRVAHV--------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             CEEECCCCccccc--------CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            7777777665433        3455666777777777777766665442  5566666665433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=6.8e-20  Score=190.13  Aligned_cols=240  Identities=20%  Similarity=0.217  Sum_probs=183.2

Q ss_pred             cEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCC
Q 048810          211 PIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDG  289 (582)
Q Consensus       211 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~  289 (582)
                      .+.++..+..+..+|.... ++++.|+++++  ....++...|.++++|++|++++|.++.++ ..+.++++|++|+|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS-TNTRLLNLHEN--QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC-TTCSEEECCSC--CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCCCC-CCCcEEEccCC--cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            4567777788888887653 68889999887  556666666789999999999999988755 6788899999999999


Q ss_pred             CCCCC-c-cccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccc
Q 048810          290 CRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK  366 (582)
Q Consensus       290 ~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~  366 (582)
                      |+++. + ..+..+++|++|++++|.+..+|. .+..+++|++|++++|+.+..++...+..+++|++|++++|.+..  
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--  199 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--  199 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--
Confidence            99888 3 468889999999999999988776 578889999999999888888888778889999999999887542  


Q ss_pred             ccCCCccchhhccCCCCccEEEEEecccccCCcc-c-ccccccEEEEEeccccccccccccccccceecccceeehcccc
Q 048810          367 VEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD-L-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRN  444 (582)
Q Consensus       367 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~  444 (582)
                              +..+..+++|+.|++++|.+..++.. + .+++|+.|++..+..                   ..+.    +
T Consensus       200 --------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------~~~~----~  248 (440)
T 3zyj_A          200 --------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-------------------QVIE----R  248 (440)
T ss_dssp             --------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-------------------CEEC----T
T ss_pred             --------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce-------------------eEEC----h
Confidence                    23577888999999999988876443 3 778888887754432                   0000    1


Q ss_pred             chHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecC
Q 048810          445 PGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCS  490 (582)
Q Consensus       445 ~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  490 (582)
                      ..+.. +++|+.|+|++|... ..+...  +..+++|+.|+|++++
T Consensus       249 ~~~~~-l~~L~~L~L~~N~l~-~~~~~~--~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          249 NAFDN-LQSLVEINLAHNNLT-LLPHDL--FTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TSSTT-CTTCCEEECTTSCCC-CCCTTT--TSSCTTCCEEECCSSC
T ss_pred             hhhcC-CCCCCEEECCCCCCC-ccChhH--hccccCCCEEEcCCCC
Confidence            22222 378999999988744 333332  3478999999998875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=7.8e-20  Score=190.39  Aligned_cols=240  Identities=20%  Similarity=0.179  Sum_probs=185.8

Q ss_pred             cEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCC
Q 048810          211 PIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDG  289 (582)
Q Consensus       211 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~  289 (582)
                      .+.++..+..+..+|.... ++++.|+++++  ....++...|.++++|++|++++|.++.++ ..+.++++|++|+|++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMEN--NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC-TTCSEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCccCCCCC-CCccEEECcCC--cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            4567777788888876553 68899999887  555666666789999999999999998855 6788999999999999


Q ss_pred             CCCCC-c-cccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccc
Q 048810          290 CRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK  366 (582)
Q Consensus       290 ~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~  366 (582)
                      |.++. + ..+..+++|++|++++|.+..+|. .+.++++|++|++++|+.++.++...+..+++|++|++++|.+..  
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--  210 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--  210 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--
Confidence            99888 4 458889999999999999998876 578899999999999888999988778899999999999887543  


Q ss_pred             ccCCCccchhhccCCCCccEEEEEecccccCCcc-c-ccccccEEEEEeccccccccccccccccceecccceeehcccc
Q 048810          367 VEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD-L-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRN  444 (582)
Q Consensus       367 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~  444 (582)
                              ...+..+++|+.|++++|.+..++.. + .+++|+.|++..+..                   ..+.    +
T Consensus       211 --------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------~~~~----~  259 (452)
T 3zyi_A          211 --------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-------------------SLIE----R  259 (452)
T ss_dssp             --------CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC-------------------CEEC----T
T ss_pred             --------cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC-------------------ceEC----H
Confidence                    23577889999999999988877544 3 777888887754433                   0000    2


Q ss_pred             chHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecC
Q 048810          445 PGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCS  490 (582)
Q Consensus       445 ~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  490 (582)
                      ..+.. +++|+.|+|++|.. +..+...  ++.+++|++|+|++++
T Consensus       260 ~~~~~-l~~L~~L~L~~N~l-~~~~~~~--~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          260 NAFDG-LASLVELNLAHNNL-SSLPHDL--FTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTTTT-CTTCCEEECCSSCC-SCCCTTS--STTCTTCCEEECCSSC
T ss_pred             HHhcC-CCCCCEEECCCCcC-CccChHH--hccccCCCEEEccCCC
Confidence            22333 37899999998864 4444332  3478999999998875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.83  E-value=2.8e-20  Score=183.33  Aligned_cols=241  Identities=21%  Similarity=0.153  Sum_probs=164.6

Q ss_pred             EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC---ChhhhcccCccEEEcC
Q 048810          212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL---PSSLDRLINLQTLCLD  288 (582)
Q Consensus       212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l---p~~i~~L~~L~~L~L~  288 (582)
                      +.++.+++.+..+|.... ++++.|+++++  ....++..+|.++++|++|++++|.++.+   |..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n--~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP-SSATRLELESN--KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC-TTCCEEECCSS--CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccCCCCCC-CCCCEEECCCC--ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            356777777777776443 67888888876  45567777778888888888888887654   5667778888888888


Q ss_pred             CCCCCC-ccccCCCCCccEEEeeCCCCCccch--hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccc
Q 048810          289 GCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPL--EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWE  365 (582)
Q Consensus       289 ~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~  365 (582)
                      +|.+.. +..+..+++|++|++++|.+..++.  .+..+++|++|++++| .+...++..++.+++|++|++++|.+...
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccc
Confidence            888777 6668888888888888888877764  5778888888888884 45555555577888888888888765431


Q ss_pred             cccCCCccchhhccCCCCccEEEEEecccccCCc-cc-ccccccEEEEEeccccccccccccccccceecccceeehccc
Q 048810          366 KVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQ-DL-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLR  443 (582)
Q Consensus       366 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~  443 (582)
                             ..+..+..+++|+.|++++|.+..++. .+ .+++|+.|+++.+.. ..                  +.    
T Consensus       166 -------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~------------------~~----  215 (306)
T 2z66_A          166 -------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FS------------------LD----  215 (306)
T ss_dssp             -------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-SB------------------CC----
T ss_pred             -------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc-Cc------------------cC----
Confidence                   134567778888888888887776533 33 566666666543332 00                  00    


Q ss_pred             cchHHHhhhcccceeeccccCcccccccccCCCCCC-CCcEEEEeecC
Q 048810          444 NPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFP-RLKHLYVESCS  490 (582)
Q Consensus       444 ~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~  490 (582)
                      +..+.. +++|+.|++++|......+..+   ..+| +|++|++++++
T Consensus       216 ~~~~~~-l~~L~~L~L~~N~l~~~~~~~~---~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          216 TFPYKC-LNSLQVLDYSLNHIMTSKKQEL---QHFPSSLAFLNLTQND  259 (306)
T ss_dssp             SGGGTT-CTTCCEEECTTSCCCBCSSSSC---CCCCTTCCEEECTTCC
T ss_pred             hhhccC-cccCCEeECCCCCCcccCHHHH---HhhhccCCEEEccCCC
Confidence            111222 3677888888776544444443   2554 78888887764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=9.1e-21  Score=187.67  Aligned_cols=253  Identities=15%  Similarity=0.105  Sum_probs=170.6

Q ss_pred             ccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcC
Q 048810          245 SIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQ  323 (582)
Q Consensus       245 ~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~  323 (582)
                      ....+..++..+++|++|++++|.++.++ ..++.+++|++|++++|.++....+..+++|++|++++|.++.+|.    
T Consensus        22 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----   97 (317)
T 3o53_A           22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----   97 (317)
T ss_dssp             HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE----
T ss_pred             hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC----
Confidence            34455566777889999999999998865 6788999999999999998874348889999999999998887764    


Q ss_pred             CCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccccc
Q 048810          324 LRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVS  403 (582)
Q Consensus       324 l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  403 (582)
                      .++|++|++++ +.+..++.   ..+++|++|++++|.+...        ....++.+++|+.|++++|.+..++.    
T Consensus        98 ~~~L~~L~l~~-n~l~~~~~---~~~~~L~~L~l~~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~----  161 (317)
T 3o53_A           98 GPSIETLHAAN-NNISRVSC---SRGQGKKNIYLANNKITML--------RDLDEGCRSRVQYLDLKLNEIDTVNF----  161 (317)
T ss_dssp             CTTCCEEECCS-SCCSEEEE---CCCSSCEEEECCSSCCCSG--------GGBCTGGGSSEEEEECTTSCCCEEEG----
T ss_pred             CCCcCEEECCC-CccCCcCc---cccCCCCEEECCCCCCCCc--------cchhhhccCCCCEEECCCCCCCcccH----
Confidence            48899999988 56666664   3477888899888876544        33456677888888888776654321    


Q ss_pred             ccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcE
Q 048810          404 VELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKH  483 (582)
Q Consensus       404 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~  483 (582)
                                                               ..+...+++|++|++++|.. +..+.    ...+++|++
T Consensus       162 -----------------------------------------~~~~~~l~~L~~L~L~~N~l-~~~~~----~~~l~~L~~  195 (317)
T 3o53_A          162 -----------------------------------------AELAASSDTLEHLNLQYNFI-YDVKG----QVVFAKLKT  195 (317)
T ss_dssp             -----------------------------------------GGGGGGTTTCCEEECTTSCC-CEEEC----CCCCTTCCE
T ss_pred             -----------------------------------------HHHhhccCcCCEEECCCCcC-ccccc----ccccccCCE
Confidence                                                     11111135666777766653 33322    224677777


Q ss_pred             EEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCc-ccccChhHHhhhh
Q 048810          484 LYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKL-KHLFSFSMAKNLL  562 (582)
Q Consensus       484 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~l~~~~~~~~l~  562 (582)
                      |++++| .++.++.     ....+++|+.|++++ ++++.++..    ...+++|+.|++++|+-. ..++  ..+..++
T Consensus       196 L~Ls~N-~l~~l~~-----~~~~l~~L~~L~L~~-N~l~~l~~~----~~~l~~L~~L~l~~N~~~~~~~~--~~~~~~~  262 (317)
T 3o53_A          196 LDLSSN-KLAFMGP-----EFQSAAGVTWISLRN-NKLVLIEKA----LRFSQNLEHFDLRGNGFHCGTLR--DFFSKNQ  262 (317)
T ss_dssp             EECCSS-CCCEECG-----GGGGGTTCSEEECTT-SCCCEECTT----CCCCTTCCEEECTTCCCBHHHHH--HHHHTCH
T ss_pred             EECCCC-cCCcchh-----hhcccCcccEEECcC-CcccchhhH----hhcCCCCCEEEccCCCccCcCHH--HHHhccc
Confidence            777776 3444432     134567777777777 456655542    456777888888777433 1232  3556777


Q ss_pred             hcceeeeccCcchH
Q 048810          563 WLQKVGVEECDELK  576 (582)
Q Consensus       563 ~L~~L~i~~C~~L~  576 (582)
                      +|+.|++.+|+.++
T Consensus       263 ~L~~l~l~~~~~l~  276 (317)
T 3o53_A          263 RVQTVAKQTVKKLT  276 (317)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cceEEECCCchhcc
Confidence            77777777665554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=4.8e-21  Score=189.69  Aligned_cols=269  Identities=13%  Similarity=0.067  Sum_probs=183.3

Q ss_pred             CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEE
Q 048810          229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLS  308 (582)
Q Consensus       229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~  308 (582)
                      .+++|+.|+++++  ....++...|..+++|++|++++|.++..++ +..+++|++|++++|.++..+   ..++|++|+
T Consensus        32 ~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGN--PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTS--CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred             cCCCCCEEECcCC--ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEE
Confidence            3456667777665  4445555666888888888888888876654 788888888888888776622   237888888


Q ss_pred             eeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhc-cCCCCccEE
Q 048810          309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVEL-NGLSKLTTL  387 (582)
Q Consensus       309 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L  387 (582)
                      +++|.+..++.  ..+++|++|++++ +.+..+++..++.+++|++|++++|.+...        .+..+ ..+++|+.|
T Consensus       106 l~~n~l~~~~~--~~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~~l~~L~~L  174 (317)
T 3o53_A          106 AANNNISRVSC--SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHL  174 (317)
T ss_dssp             CCSSCCSEEEE--CCCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEE
T ss_pred             CCCCccCCcCc--cccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCcc--------cHHHHhhccCcCCEE
Confidence            88888887765  3467888888888 456666665577788888888888876543        23444 367888888


Q ss_pred             EEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCccc
Q 048810          388 EIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPS  467 (582)
Q Consensus       388 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~  467 (582)
                      ++++|.+..++....+++|+.|+++.+..                   .  ..   ++.+.. +++|+.|++++|. ++.
T Consensus       175 ~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l-------------------~--~l---~~~~~~-l~~L~~L~L~~N~-l~~  228 (317)
T 3o53_A          175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKL-------------------A--FM---GPEFQS-AAGVTWISLRNNK-LVL  228 (317)
T ss_dssp             ECTTSCCCEEECCCCCTTCCEEECCSSCC-------------------C--EE---CGGGGG-GTTCSEEECTTSC-CCE
T ss_pred             ECCCCcCcccccccccccCCEEECCCCcC-------------------C--cc---hhhhcc-cCcccEEECcCCc-ccc
Confidence            88888887776665677788887765443                   0  11   333333 4899999999986 445


Q ss_pred             ccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEeccc
Q 048810          468 VVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCN  547 (582)
Q Consensus       468 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~  547 (582)
                      ++..+   +.+++|+.|++++|+-.....    ......+++|+.|++.++..++.....    ....+.+....-..|.
T Consensus       229 l~~~~---~~l~~L~~L~l~~N~~~~~~~----~~~~~~~~~L~~l~l~~~~~l~~~~~~----~~~~~~~~~~~~~cc~  297 (317)
T 3o53_A          229 IEKAL---RFSQNLEHFDLRGNGFHCGTL----RDFFSKNQRVQTVAKQTVKKLTGQNEE----ECTVPTLGHYGAYCCE  297 (317)
T ss_dssp             ECTTC---CCCTTCCEEECTTCCCBHHHH----HHHHHTCHHHHHHHHHHHHHHHSSSSC----CCSSTTCEEETTEEEB
T ss_pred             hhhHh---hcCCCCCEEEccCCCccCcCH----HHHHhccccceEEECCCchhccCCchh----ccCCCceecccceeec
Confidence            55554   488999999999986431111    113466889999999987777655322    2233445554455676


Q ss_pred             Cccc
Q 048810          548 KLKH  551 (582)
Q Consensus       548 ~L~~  551 (582)
                      .+..
T Consensus       298 ~l~~  301 (317)
T 3o53_A          298 DLPA  301 (317)
T ss_dssp             CCTT
T ss_pred             cCCh
Confidence            6654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=5.8e-19  Score=183.80  Aligned_cols=240  Identities=17%  Similarity=0.165  Sum_probs=170.7

Q ss_pred             ccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEe
Q 048810          233 LGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSF  309 (582)
Q Consensus       233 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l  309 (582)
                      .+.+++.+.  ....+|..+   .+++++|++++|.++.+ |..++++++|++|++++|.++.  +..+.++++|++|++
T Consensus        56 ~~~v~c~~~--~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRR--GLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSS--CCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCC--CcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            456666654  555677654   47899999999999885 5789999999999999999988  478999999999999


Q ss_pred             eCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810          310 RDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE  388 (582)
Q Consensus       310 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  388 (582)
                      ++|.++.+|.. +..+++|++|++++ +.+..+|...+..+++|++|++++|.....       .....+.++++|+.|+
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~-------i~~~~~~~l~~L~~L~  202 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEY-------ISEGAFEGLFNLKYLN  202 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCE-------ECTTTTTTCTTCCEEE
T ss_pred             CCCcCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccc-------cChhhccCCCCCCEEE
Confidence            99999988876 78899999999999 568888887789999999999998643322       1233578899999999


Q ss_pred             EEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccc
Q 048810          389 IHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSV  468 (582)
Q Consensus       389 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~  468 (582)
                      +++|.+..+|....+++|+.|+++.+..                   ..+.    +..+.. +++|+.|++++|......
T Consensus       203 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l-------------------~~~~----~~~~~~-l~~L~~L~L~~n~l~~~~  258 (452)
T 3zyi_A          203 LGMCNIKDMPNLTPLVGLEELEMSGNHF-------------------PEIR----PGSFHG-LSSLKKLWVMNSQVSLIE  258 (452)
T ss_dssp             CTTSCCSSCCCCTTCTTCCEEECTTSCC-------------------SEEC----GGGGTT-CTTCCEEECTTSCCCEEC
T ss_pred             CCCCcccccccccccccccEEECcCCcC-------------------cccC----cccccC-ccCCCEEEeCCCcCceEC
Confidence            9999888776544666677666643332                   0000    222322 266777777766543333


Q ss_pred             cccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccc
Q 048810          469 VHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIG  517 (582)
Q Consensus       469 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~  517 (582)
                      +..+   +.+++|++|+|++| .++.++..    ....+++|+.|++.+
T Consensus       259 ~~~~---~~l~~L~~L~L~~N-~l~~~~~~----~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          259 RNAF---DGLASLVELNLAHN-NLSSLPHD----LFTPLRYLVELHLHH  299 (452)
T ss_dssp             TTTT---TTCTTCCEEECCSS-CCSCCCTT----SSTTCTTCCEEECCS
T ss_pred             HHHh---cCCCCCCEEECCCC-cCCccChH----HhccccCCCEEEccC
Confidence            3332   36677777777666 34444322    234456666666665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=4.4e-19  Score=172.84  Aligned_cols=173  Identities=21%  Similarity=0.252  Sum_probs=124.1

Q ss_pred             EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCC
Q 048810          212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGC  290 (582)
Q Consensus       212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~  290 (582)
                      +.++.+++.+..+|... .++++.|+++++  ....++...|..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n--~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTTC-CTTCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcCC-CCCceEEEeeCC--cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            56777777777777543 467888888876  45556666667788888888888887775 567778888888888888


Q ss_pred             C-CCC--ccccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccc
Q 048810          291 R-LKD--IAKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK  366 (582)
Q Consensus       291 ~-l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~  366 (582)
                      + +..  +..+..+++|++|++++|.+..+ |..+..+++|++|++++ +.++.++...++.+++|++|++++|.+... 
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-  168 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSV-  168 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEE-
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCccccc-
Confidence            6 666  46677788888888888877766 44567788888888887 456667665567788888888877765433 


Q ss_pred             ccCCCccchhhccCCCCccEEEEEeccccc
Q 048810          367 VEGGSNASLVELNGLSKLTTLEIHVRYAEI  396 (582)
Q Consensus       367 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  396 (582)
                             ....+..+++|+.|++++|.+..
T Consensus       169 -------~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          169 -------PERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             -------CTTTTTTCTTCCEEECCSSCCCE
T ss_pred             -------CHHHhcCccccCEEECCCCcccc
Confidence                   22346667777777777765543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=6.2e-19  Score=182.90  Aligned_cols=240  Identities=16%  Similarity=0.177  Sum_probs=169.5

Q ss_pred             ccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEe
Q 048810          233 LGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSF  309 (582)
Q Consensus       233 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l  309 (582)
                      .+.++..+.  ....+|..+   .+++++|++++|.++.++ ..+.++++|++|+|++|.++.  +..+.++++|++|++
T Consensus        45 ~~~v~c~~~--~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRK--NLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSC--CCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCC--CcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            456666654  566777755   378999999999998865 689999999999999999988  578999999999999


Q ss_pred             eCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810          310 RDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE  388 (582)
Q Consensus       310 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  388 (582)
                      ++|+++.+|. .+..+++|++|++++ +.+..++...+..+++|++|++++|.....       .....+.++++|+.|+
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-------i~~~~~~~l~~L~~L~  191 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSY-------ISEGAFEGLSNLRYLN  191 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCE-------ECTTTTTTCSSCCEEE
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcce-------eCcchhhcccccCeec
Confidence            9999998887 488999999999999 568888887789999999999998643322       1234578899999999


Q ss_pred             EEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccc
Q 048810          389 IHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSV  468 (582)
Q Consensus       389 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~  468 (582)
                      +++|.+..+|....+++|+.|+++.+.. .                  .+.    +..+.. +++|+.|+++++......
T Consensus       192 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l-~------------------~~~----~~~~~~-l~~L~~L~L~~n~l~~~~  247 (440)
T 3zyj_A          192 LAMCNLREIPNLTPLIKLDELDLSGNHL-S------------------AIR----PGSFQG-LMHLQKLWMIQSQIQVIE  247 (440)
T ss_dssp             CTTSCCSSCCCCTTCSSCCEEECTTSCC-C------------------EEC----TTTTTT-CTTCCEEECTTCCCCEEC
T ss_pred             CCCCcCccccccCCCcccCEEECCCCcc-C------------------ccC----hhhhcc-CccCCEEECCCCceeEEC
Confidence            9999888877544666666666644332 0                  000    122222 266667777666543333


Q ss_pred             cccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccc
Q 048810          469 VHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIG  517 (582)
Q Consensus       469 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~  517 (582)
                      +..   +..+++|++|+|++| .++.++..    ....+++|+.|++++
T Consensus       248 ~~~---~~~l~~L~~L~L~~N-~l~~~~~~----~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          248 RNA---FDNLQSLVEINLAHN-NLTLLPHD----LFTPLHHLERIHLHH  288 (440)
T ss_dssp             TTS---STTCTTCCEEECTTS-CCCCCCTT----TTSSCTTCCEEECCS
T ss_pred             hhh---hcCCCCCCEEECCCC-CCCccChh----HhccccCCCEEEcCC
Confidence            333   236666777777665 34443322    234456666666655

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.80  E-value=2.2e-19  Score=210.89  Aligned_cols=170  Identities=17%  Similarity=0.253  Sum_probs=140.2

Q ss_pred             CCcceEEccC-CCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHHhccccc
Q 048810            2 NSQKEIQIDV-LSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAK   80 (582)
Q Consensus         2 ~~~~~~~l~~-L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~   80 (582)
                      +....|++++ |+++|||+||++.++..  .+++.+++++|+++|+|+||||+++|+.|+.+. ..|+..++.+......
T Consensus       275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~  351 (1249)
T 3sfz_A          275 GPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFK  351 (1249)
T ss_dssp             SCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCC
T ss_pred             CCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhh
Confidence            4567899996 99999999999999632  344566899999999999999999999999776 4799999998766532


Q ss_pred             ccc----chhhhHHHHHHHHHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHHHH
Q 048810           81 EID----GMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKL  156 (582)
Q Consensus        81 ~~~----~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~~L  156 (582)
                      .+.    ...+.+..++.+||+.||.+ .|.||+|||+||+++.|+++.++.+|.+++        +    .+.+++++|
T Consensus       352 ~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--------~----~~~~~l~~L  418 (1249)
T 3sfz_A          352 RIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET--------E----EVEDILQEF  418 (1249)
T ss_dssp             CSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH--------H----HHHHHHHHH
T ss_pred             hcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH--------H----HHHHHHHHH
Confidence            221    12367999999999999998 899999999999999999999999997763        2    334578899


Q ss_pred             HhccccccCCC--CccEEhhhHHHHHHHHHhcc
Q 048810          157 KSLCLLLDGDA--EDEVKMHDVIRVVAVSIAED  187 (582)
Q Consensus       157 ~~~~l~~~~~~--~~~~~mhdl~~~l~~~~~~~  187 (582)
                      +++||++....  ..+|+|||++|++++..+.+
T Consensus       419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~  451 (1249)
T 3sfz_A          419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS  451 (1249)
T ss_dssp             HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred             HhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence            99999976532  33699999999999988664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=1.9e-19  Score=177.37  Aligned_cols=207  Identities=19%  Similarity=0.128  Sum_probs=168.8

Q ss_pred             hhHHHHHhhccCcEEEEecCCCCcCCCCCC--CCCCccEEEeeccCccc-cccChHHhcCCCCccEEEcCCCCCCCCChh
Q 048810          199 LEKKMEETIRKDPIAISLPYRGDQVLPQRM--RCPRLGLFLLHTIGLCS-IQVSDHFFEGMEGLKVLQFPGIGSSSLPSS  275 (582)
Q Consensus       199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~  275 (582)
                      .++.+|...+.+++++++++|.+..++...  .+++|+.|+++++.-.. ...+.. +..+++|++|++++|.++.+|..
T Consensus        18 ~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~   96 (306)
T 2z66_A           18 GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSN   96 (306)
T ss_dssp             CCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEE
T ss_pred             CcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChhh
Confidence            344455555678999999999999998753  89999999999872111 112344 45799999999999999999999


Q ss_pred             hhcccCccEEEcCCCCCCC-c--cccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccc--cCcccccCC
Q 048810          276 LDRLINLQTLCLDGCRLKD-I--AKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEV--IAPNVISKL  349 (582)
Q Consensus       276 i~~L~~L~~L~L~~~~l~~-~--~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~--lp~~~l~~l  349 (582)
                      +..+++|++|++++|.++. +  ..+..+++|++|++++|.+... |..+..+++|++|++++|. +..  +|.. ++.+
T Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~l  174 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI-FTEL  174 (306)
T ss_dssp             EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC-CTTC
T ss_pred             cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH-HhhC
Confidence            9999999999999999887 3  5789999999999999998854 5568899999999999954 443  5554 8999


Q ss_pred             CcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEeccc
Q 048810          350 SRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGEA  416 (582)
Q Consensus       350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~  416 (582)
                      ++|++|++++|.+...        .+..+..+++|+.|++++|.+..++...  .+++|+.|+++.+..
T Consensus       175 ~~L~~L~Ls~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          175 RNLTFLDLSQCQLEQL--------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             TTCCEEECTTSCCCEE--------CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             cCCCEEECCCCCcCCc--------CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            9999999999976544        4567889999999999999998877643  778999998876554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=3.6e-18  Score=164.89  Aligned_cols=194  Identities=19%  Similarity=0.263  Sum_probs=162.5

Q ss_pred             CcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh-hhcccCccEEEcC
Q 048810          210 DPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LDRLINLQTLCLD  288 (582)
Q Consensus       210 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~L~~L~L~  288 (582)
                      ..+.++++++.+..+|.... ++++.|+++++  ....++...|..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSN--KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC-TTCSEEECCSS--CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccCCCCC-CCCCEEECcCC--CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            46789999999988887554 68999999987  55667776778999999999999999998865 4789999999999


Q ss_pred             CCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccc
Q 048810          289 GCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWE  365 (582)
Q Consensus       289 ~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~  365 (582)
                      +|.++. + ..+..+++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+|...++.+++|++|++++|.+...
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            999988 3 5678899999999999999987765 68899999999999 578888887788999999999999876544


Q ss_pred             cccCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEecc
Q 048810          366 KVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGE  415 (582)
Q Consensus       366 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~  415 (582)
                              ....+.++++|+.|++++|.+..++...  .+++|+.|++..+.
T Consensus       173 --------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          173 --------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             --------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             --------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence                    3345788999999999999999888764  67889988876554

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.78  E-value=5.7e-19  Score=191.03  Aligned_cols=144  Identities=19%  Similarity=0.277  Sum_probs=119.9

Q ss_pred             ceEEcc------CCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccC--ChHHHHHHHHHHhc
Q 048810            5 KEIQID------VLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNE--SLDTWKDVLRQLRS   76 (582)
Q Consensus         5 ~~~~l~------~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~--~~~~W~~~l~~l~~   76 (582)
                      .+|+++      +|+++|||+||+++....     ..+++.+|   |+|+||||+++|+.|+++  +.++|+..      
T Consensus       285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~------  350 (1221)
T 1vt4_I          285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV------  350 (1221)
T ss_dssp             SSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC------
T ss_pred             eEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC------
Confidence            367888      999999999999985332     23344554   999999999999999977  78889753      


Q ss_pred             cccccccchhhhHHHHHHHHHhhcCchhH-HHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHHH
Q 048810           77 SYAKEIDGMEKNVYLSIKLSYDFLRSEEA-KSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGK  155 (582)
Q Consensus        77 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~l-k~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~~  155 (582)
                              ....+..++.+||+.||++ . |.||+|||+||+++.|+++.++.+|+++|.       ++    +.+++++
T Consensus       351 --------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------ed----Ae~~L~e  410 (1221)
T 1vt4_I          351 --------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------SD----VMVVVNK  410 (1221)
T ss_dssp             --------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------HH----HHHHHHH
T ss_pred             --------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------HH----HHHHHHH
Confidence                    1267999999999999998 8 999999999999999999999999999981       22    4457899


Q ss_pred             HHhccccccCCCCccEEhhhHHHHHHH
Q 048810          156 LKSLCLLLDGDAEDEVKMHDVIRVVAV  182 (582)
Q Consensus       156 L~~~~l~~~~~~~~~~~mhdl~~~l~~  182 (582)
                      |+++||++..+...+|+|||++++++.
T Consensus       411 LvdRSLLq~d~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          411 LHKYSLVEKQPKESTISIPSIYLELKV  437 (1221)
T ss_dssp             HHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred             HHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence            999999987656678999999998653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=2.7e-18  Score=167.23  Aligned_cols=196  Identities=21%  Similarity=0.172  Sum_probs=168.4

Q ss_pred             hccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEE
Q 048810          207 IRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLC  286 (582)
Q Consensus       207 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~  286 (582)
                      ...+++.+++.++.+..+|.... ++++.|+++++  ....++...|..+++|++|++++|.++.+|.. +.+++|++|+
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~   83 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSEN--LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD   83 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTS--CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred             ccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCC--cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence            34678999999999999987664 78999999998  45566666779999999999999999988764 8899999999


Q ss_pred             cCCCCCCC-ccccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          287 LDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       287 L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      +++|.++. |..+..+++|++|++++|+++.+|. .+..+++|++|++++ +.++.+|++.+..+++|+.|++++|.+..
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCc
Confidence            99999998 7788999999999999999998874 588999999999999 57888988878899999999999997654


Q ss_pred             ccccCCCccchhhccCCCCccEEEEEecccccCCccc-ccccccEEEEEecc
Q 048810          365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMFIGE  415 (582)
Q Consensus       365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~  415 (582)
                      .        ....+..+++|+.|++++|.+..+|..+ ...+|+.+.+..+.
T Consensus       163 l--------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          163 L--------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             C--------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             c--------CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            3        2344678999999999999999999887 67788888876544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.78  E-value=3.1e-21  Score=201.84  Aligned_cols=354  Identities=14%  Similarity=0.086  Sum_probs=194.7

Q ss_pred             HhhccCcEEEEecCCCCcC-----CCCCC-CCCCccEEEeeccCccccccChHHhcCCC----CccEEEcCCCCCCC---
Q 048810          205 ETIRKDPIAISLPYRGDQV-----LPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGME----GLKVLQFPGIGSSS---  271 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~----~Lr~L~l~~~~~~~---  271 (582)
                      ....++++++++++|.+..     ++... .+++|++|+++++ ......+..++..++    +|++|++++|.++.   
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            3445678888888887752     23322 5678888888876 222222334445555    68888888888763   


Q ss_pred             --CChhhhcccCccEEEcCCCCCCC--cccc-----CCCCCccEEEeeCCCCCc-----cchhhcCCCCCCEEccccccc
Q 048810          272 --LPSSLDRLINLQTLCLDGCRLKD--IAKV-----GQLKKLEVLSFRDSDIEQ-----LPLEIGQLRRLQLLDLSNCWT  337 (582)
Q Consensus       272 --lp~~i~~L~~L~~L~L~~~~l~~--~~~~-----~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~  337 (582)
                        +|..+..+++|++|++++|.+..  +..+     ...++|++|++++|.++.     ++..+..+++|++|++++|. 
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-  181 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-  181 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-
Confidence              56777888888888888888765  3222     235678888888887773     45566777888888888854 


Q ss_pred             ccccCccccc-----CCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCC-----ccc--cccc
Q 048810          338 LEVIAPNVIS-----KLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILP-----QDL--VSVE  405 (582)
Q Consensus       338 l~~lp~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~--~~~~  405 (582)
                      ++......+.     ..++|++|++++|.+...    .....+..+..+++|++|++++|.+....     ..+  .+++
T Consensus       182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~  257 (461)
T 1z7x_W          182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD----NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR  257 (461)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT----HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH----HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence            4432221122     356888888888765432    00113445667788888888877665321     111  3677


Q ss_pred             ccEEEEEeccccc-------cccccccccccceecccceeehccccchHHHh----hhcccceeeccccCccc----ccc
Q 048810          406 LQRYKMFIGEARG-------RWFVKSETSRLMKLERLKSVSILLRNPGMRML----LQRTEDLWLETLEGVPS----VVH  470 (582)
Q Consensus       406 L~~L~l~~~~~~~-------~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~----~~~L~~L~L~~~~~~~~----~~~  470 (582)
                      |+.|+++.+....       ......+.++.+.+..+.--..-  +..+...    .++|++|++++|.....    ++.
T Consensus       258 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  335 (461)
T 1z7x_W          258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG--ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  335 (461)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH--HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH--HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence            8888776554311       11222445555555544211100  1112221    14777777777763322    122


Q ss_pred             cccCCCCCCCCcEEEEeecCCceeeecccccc-cCCCCccccccccccccccccccccccc-CcccCCCccEEEEecccC
Q 048810          471 ELDDGEGFPRLKHLYVESCSEILHIVGSVRRV-GCEVFPLLETLYLIGLANLETICCSQLR-EDQSFSNLRIIEVEHCNK  548 (582)
Q Consensus       471 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~L~~~~~~~~~-~~~~~~~L~~L~l~~c~~  548 (582)
                      .   +..+++|++|++++|. +.......... .....++|++|++++| +++......++ ....+++|++|++++| .
T Consensus       336 ~---l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~  409 (461)
T 1z7x_W          336 V---LAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-C  409 (461)
T ss_dssp             H---HHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-S
T ss_pred             H---HhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-C
Confidence            2   2256777777777763 22211000000 0112567777777774 34421100011 1345677777777777 3


Q ss_pred             cccccChhHHhhh----hhcceeeeccC
Q 048810          549 LKHLFSFSMAKNL----LWLQKVGVEEC  572 (582)
Q Consensus       549 L~~l~~~~~~~~l----~~L~~L~i~~C  572 (582)
                      +.........+.+    ++|+.|.+.++
T Consensus       410 i~~~~~~~l~~~l~~~~~~L~~L~~~~~  437 (461)
T 1z7x_W          410 LGDAGILQLVESVRQPGCLLEQLVLYDI  437 (461)
T ss_dssp             CCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred             CCHHHHHHHHHHhccCCcchhheeeccc
Confidence            4443222222222    24666666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=1.1e-18  Score=182.81  Aligned_cols=235  Identities=16%  Similarity=0.108  Sum_probs=156.9

Q ss_pred             CCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEccccc
Q 048810          257 EGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNC  335 (582)
Q Consensus       257 ~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~  335 (582)
                      ++|++|++++|.++.+| ..++.+++|++|+|++|.+++...++.+++|++|++++|.++.+|.    .++|++|++++ 
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~-  108 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN-  108 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS-
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC-
Confidence            48899999999888864 6788889999999999988873338888999999999988887775    37888999888 


Q ss_pred             ccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEecc
Q 048810          336 WTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGE  415 (582)
Q Consensus       336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  415 (582)
                      +.+..++.   ..+++|+.|++++|.+...        .+..++.+++|+.|++++|.+...+                 
T Consensus       109 N~l~~~~~---~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------  160 (487)
T 3oja_A          109 NNISRVSC---SRGQGKKNIYLANNKITML--------RDLDEGCRSRVQYLDLKLNEIDTVN-----------------  160 (487)
T ss_dssp             SCCCCEEE---CCCSSCEEEECCSSCCCSG--------GGBCGGGGSSEEEEECTTSCCCEEE-----------------
T ss_pred             CcCCCCCc---cccCCCCEEECCCCCCCCC--------CchhhcCCCCCCEEECCCCCCCCcC-----------------
Confidence            45666664   3567888888888876544        3446677788888888777655321                 


Q ss_pred             ccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceee
Q 048810          416 ARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHI  495 (582)
Q Consensus       416 ~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  495 (582)
                                                  |..+...+++|+.|+|++|.. +..+.    ...+++|++|++++|. +..+
T Consensus       161 ----------------------------~~~l~~~l~~L~~L~Ls~N~l-~~~~~----~~~l~~L~~L~Ls~N~-l~~~  206 (487)
T 3oja_A          161 ----------------------------FAELAASSDTLEHLNLQYNFI-YDVKG----QVVFAKLKTLDLSSNK-LAFM  206 (487)
T ss_dssp             ----------------------------GGGGGGGTTTCCEEECTTSCC-CEEEC----CCCCTTCCEEECCSSC-CCEE
T ss_pred             ----------------------------hHHHhhhCCcccEEecCCCcc-ccccc----cccCCCCCEEECCCCC-CCCC
Confidence                                        122221236677777776653 32222    2246777777777763 4444


Q ss_pred             ecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCc-ccccChhHHhhhhhcceeeec
Q 048810          496 VGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKL-KHLFSFSMAKNLLWLQKVGVE  570 (582)
Q Consensus       496 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~l~~~~~~~~l~~L~~L~i~  570 (582)
                      +.     ....+++|+.|++++ +.+..+|..    .+.+++|+.|++++|+-. ..+|  ..+..++.|+.+++.
T Consensus       207 ~~-----~~~~l~~L~~L~Ls~-N~l~~lp~~----l~~l~~L~~L~l~~N~l~c~~~~--~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          207 GP-----EFQSAAGVTWISLRN-NKLVLIEKA----LRFSQNLEHFDLRGNGFHCGTLR--DFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CG-----GGGGGTTCSEEECTT-SCCCEECTT----CCCCTTCCEEECTTCCBCHHHHH--HHHTTCHHHHHHHHH
T ss_pred             CH-----hHcCCCCccEEEecC-CcCcccchh----hccCCCCCEEEcCCCCCcCcchH--HHHHhCCCCcEEecc
Confidence            32     234567777777777 456655542    456777888888877533 1332  345566666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.77  E-value=1.1e-19  Score=179.54  Aligned_cols=245  Identities=13%  Similarity=0.088  Sum_probs=159.4

Q ss_pred             CCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC--CChhhh-------cccCccEEEcCCCCCCC--cccc
Q 048810          230 CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLD-------RLINLQTLCLDGCRLKD--IAKV  298 (582)
Q Consensus       230 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~-------~L~~L~~L~L~~~~l~~--~~~~  298 (582)
                      .++|+.|++.++  .. .+|..+...   |++|+++++.++.  +|..+.       ++++|++|++++|.+++  |..+
T Consensus        42 ~~~L~~l~l~~n--~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           42 GRSLEYLLKRVD--TE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEECTTHHHHCC--TT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             CCCceeEeeccc--cc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            345566666665  22 667666443   8888888888754  666665       68889999999998875  5555


Q ss_pred             --CCCCCccEEEeeCCCCCccchhhcCC-----CCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCC
Q 048810          299 --GQLKKLEVLSFRDSDIEQLPLEIGQL-----RRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGS  371 (582)
Q Consensus       299 --~~l~~L~~L~l~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  371 (582)
                        +.+++|++|++++|.++.+|..++.+     ++|++|++++ +.+..+++..++.+++|++|++++|.....      
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------  188 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGE------  188 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCHH------
T ss_pred             HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCcc------
Confidence              88899999999999888778777766     8899999988 567777765688899999999988864321      


Q ss_pred             ccchhhc--cCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHH
Q 048810          372 NASLVEL--NGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRM  449 (582)
Q Consensus       372 ~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~  449 (582)
                      ...+..+  +.+++|+.|++++|.+..++..                                           +..+..
T Consensus       189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------------------------------------~~~~~~  225 (312)
T 1wwl_A          189 RGLISALCPLKFPTLQVLALRNAGMETPSGV-------------------------------------------CSALAA  225 (312)
T ss_dssp             HHHHHHSCTTSCTTCCEEECTTSCCCCHHHH-------------------------------------------HHHHHH
T ss_pred             hHHHHHHHhccCCCCCEEECCCCcCcchHHH-------------------------------------------HHHHHh
Confidence            0123344  6778888888877765432110                                           112222


Q ss_pred             hhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccc
Q 048810          450 LLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQL  529 (582)
Q Consensus       450 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~  529 (582)
                      .+++|+.|++++|......+...  ...+++|++|++++|. ++.++.       ..+++|+.|++++ ++++.+|.   
T Consensus       226 ~l~~L~~L~Ls~N~l~~~~~~~~--~~~l~~L~~L~Ls~N~-l~~ip~-------~~~~~L~~L~Ls~-N~l~~~p~---  291 (312)
T 1wwl_A          226 ARVQLQGLDLSHNSLRDAAGAPS--CDWPSQLNSLNLSFTG-LKQVPK-------GLPAKLSVLDLSY-NRLDRNPS---  291 (312)
T ss_dssp             TTCCCSEEECTTSCCCSSCCCSC--CCCCTTCCEEECTTSC-CSSCCS-------SCCSEEEEEECCS-SCCCSCCC---
T ss_pred             cCCCCCEEECCCCcCCcccchhh--hhhcCCCCEEECCCCc-cChhhh-------hccCCceEEECCC-CCCCCChh---
Confidence            23678888888776433332111  2356788888887763 344431       1126677777766 45555532   


Q ss_pred             cCcccCCCccEEEEecc
Q 048810          530 REDQSFSNLRIIEVEHC  546 (582)
Q Consensus       530 ~~~~~~~~L~~L~l~~c  546 (582)
                        ...+++|++|+++++
T Consensus       292 --~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          292 --PDELPQVGNLSLKGN  306 (312)
T ss_dssp             --TTTSCEEEEEECTTC
T ss_pred             --HhhCCCCCEEeccCC
Confidence              345666777777665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.77  E-value=1.1e-17  Score=164.61  Aligned_cols=193  Identities=16%  Similarity=0.157  Sum_probs=165.4

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT  284 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~  284 (582)
                      .....+++.+++.++.+..++....+++|+.|+++++  ....++.  +..+++|++|++++|.++.+| .+..+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n--~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~  111 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN--QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKT  111 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred             HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCC--cCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence            3346789999999999988886668999999999987  4555655  689999999999999999886 6899999999


Q ss_pred             EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      |++++|.++..+.+..+++|++|++++|.++.++. ++.+++|++|++++ +.+..+++  +..+++|++|++++|.+..
T Consensus       112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             EECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccC-CcCCCChh--hcCCCCCCEEECCCCccCc
Confidence            99999999996669999999999999999998887 88999999999999 46777776  7899999999999987643


Q ss_pred             ccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc
Q 048810          365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA  416 (582)
Q Consensus       365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  416 (582)
                      .          ..+..+++|+.|++++|.+..++....+++|+.|++..+..
T Consensus       188 ~----------~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          188 I----------SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             C----------GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred             C----------hhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence            3          23788999999999999998888644889999999876664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=4.4e-19  Score=185.81  Aligned_cols=239  Identities=13%  Similarity=0.042  Sum_probs=149.5

Q ss_pred             CCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEe
Q 048810          230 CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSF  309 (582)
Q Consensus       230 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l  309 (582)
                      +++|+.|+++++  ....+++..|..+++|++|++++|.++..++ ++.+++|++|++++|.++..+   ..++|++|++
T Consensus        33 ~~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGN--PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSS--CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEEC
T ss_pred             CCCccEEEeeCC--cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEEC
Confidence            345666666655  3334444455677777777777777765544 677777777777777666522   1267777777


Q ss_pred             eCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhcc-CCCCccEEE
Q 048810          310 RDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELN-GLSKLTTLE  388 (582)
Q Consensus       310 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~  388 (582)
                      ++|.+..+|.  ..+++|++|++++ +.+..+++..++.+++|++|++++|.+...        .+..+. .+++|+.|+
T Consensus       107 ~~N~l~~~~~--~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A          107 ANNNISRVSC--SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHLN  175 (487)
T ss_dssp             CSSCCCCEEE--CCCSSCEEEECCS-SCCCSGGGBCGGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEEE
T ss_pred             cCCcCCCCCc--cccCCCCEEECCC-CCCCCCCchhhcCCCCCCEEECCCCCCCCc--------ChHHHhhhCCcccEEe
Confidence            7777776654  3456777777777 345555444466777777777777765443        344443 567777777


Q ss_pred             EEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccc
Q 048810          389 IHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSV  468 (582)
Q Consensus       389 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~  468 (582)
                      +++|.+..++....+++|+.|+++.+..                   .  ..   |+.+.. +++|+.|++++|.. +.+
T Consensus       176 Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l-------------------~--~~---~~~~~~-l~~L~~L~Ls~N~l-~~l  229 (487)
T 3oja_A          176 LQYNFIYDVKGQVVFAKLKTLDLSSNKL-------------------A--FM---GPEFQS-AAGVTWISLRNNKL-VLI  229 (487)
T ss_dssp             CTTSCCCEEECCCCCTTCCEEECCSSCC-------------------C--EE---CGGGGG-GTTCSEEECTTSCC-CEE
T ss_pred             cCCCccccccccccCCCCCEEECCCCCC-------------------C--CC---CHhHcC-CCCccEEEecCCcC-ccc
Confidence            7777776665555666777776654443                   0  01   333333 38899999998774 445


Q ss_pred             cccccCCCCCCCCcEEEEeecCCc-eeeecccccccCCCCcccccccccccc
Q 048810          469 VHELDDGEGFPRLKHLYVESCSEI-LHIVGSVRRVGCEVFPLLETLYLIGLA  519 (582)
Q Consensus       469 ~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~L~~L~l~~~~  519 (582)
                      |..+   +.+++|+.|++++|+.. ..++     .....++.|+.+.+..+.
T Consensus       230 p~~l---~~l~~L~~L~l~~N~l~c~~~~-----~~~~~l~~L~~l~~~~~~  273 (487)
T 3oja_A          230 EKAL---RFSQNLEHFDLRGNGFHCGTLR-----DFFSKNQRVQTVAKQTVK  273 (487)
T ss_dssp             CTTC---CCCTTCCEEECTTCCBCHHHHH-----HHHTTCHHHHHHHHHHHH
T ss_pred             chhh---ccCCCCCEEEcCCCCCcCcchH-----HHHHhCCCCcEEeccccc
Confidence            5543   47899999999988533 1111     124557778888776433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=7e-18  Score=162.85  Aligned_cols=186  Identities=24%  Similarity=0.310  Sum_probs=158.9

Q ss_pred             hhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-h
Q 048810          199 LEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-S  275 (582)
Q Consensus       199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~  275 (582)
                      .+..+|...+..+++|++++|.+..++..  ..+++|+.|+++++  ....++..+|..+++|++|++++|.++.+|. .
T Consensus        27 ~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~  104 (270)
T 2o6q_A           27 KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN--KLQTLPAGIFKELKNLETLWVTDNKLQALPIGV  104 (270)
T ss_dssp             CCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS--CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC--ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH
Confidence            34445555567899999999999888763  38999999999987  5667888888999999999999999999875 5


Q ss_pred             hhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810          276 LDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL  352 (582)
Q Consensus       276 i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L  352 (582)
                      +..+++|++|++++|.++.  +..++.+++|++|++++|.++.+|.. ++.+++|++|++++ +.+..+++..+..+++|
T Consensus       105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L  183 (270)
T 2o6q_A          105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTEL  183 (270)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred             cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCc
Confidence            6899999999999999998  45689999999999999999998876 78999999999999 57888888778899999


Q ss_pred             cEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810          353 EELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE  395 (582)
Q Consensus       353 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  395 (582)
                      ++|++++|.+...        ....+..+++|+.|++++|.+.
T Consensus       184 ~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          184 KTLKLDNNQLKRV--------PEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CEEECCSSCCSCC--------CTTTTTTCTTCCEEECCSSCBC
T ss_pred             CEEECCCCcCCcC--------CHHHhccccCCCEEEecCCCee
Confidence            9999999976543        2345778999999999988764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=3.3e-18  Score=165.79  Aligned_cols=203  Identities=19%  Similarity=0.217  Sum_probs=162.3

Q ss_pred             HHHHhhccCcEEEEecCCCCcCCCC--CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhc
Q 048810          202 KMEETIRKDPIAISLPYRGDQVLPQ--RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDR  278 (582)
Q Consensus       202 ~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~  278 (582)
                      ..|...+.+++++++++|.+..++.  ...+++|+.|+++++  ....++...|..+++|++|++++|.++.++ ..+..
T Consensus        21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (276)
T 2z62_A           21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (276)
T ss_dssp             SCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             ccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCC--cCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence            3444456789999999999987775  237899999999987  555677767789999999999999998865 67899


Q ss_pred             ccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCc--cchhhcCCCCCCEEcccccccccccCcccccCCCccc-
Q 048810          279 LINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQ--LPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLE-  353 (582)
Q Consensus       279 L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~-  353 (582)
                      +++|++|++++|.+..  +..++.+++|++|++++|.+..  +|..++.+++|++|++++ +.++.++...+..+++|+ 
T Consensus        99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~  177 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPL  177 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCTT
T ss_pred             CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhhhccc
Confidence            9999999999999888  3468999999999999999886  688899999999999999 567777765566666666 


Q ss_pred             ---EEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEeccc
Q 048810          354 ---ELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGEA  416 (582)
Q Consensus       354 ---~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~  416 (582)
                         .|++++|.+...         ........+|+.|++++|.+..++...  .+++|+.|++..+..
T Consensus       178 l~l~L~ls~n~l~~~---------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          178 LNLSLDLSLNPMNFI---------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             CCEEEECCSSCCCEE---------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             cceeeecCCCccccc---------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence               889988876543         233334458999999999999888765  688899888865543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.75  E-value=7.3e-19  Score=189.84  Aligned_cols=151  Identities=14%  Similarity=0.077  Sum_probs=77.1

Q ss_pred             hccCcEEEEecCCCCcCCCC-----C-CCCCCccEEEeeccCcc--ccccChHHhcCCCCccEEEcCCCCCCCCChhhhc
Q 048810          207 IRKDPIAISLPYRGDQVLPQ-----R-MRCPRLGLFLLHTIGLC--SIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDR  278 (582)
Q Consensus       207 ~~~~~~~l~l~~~~~~~l~~-----~-~~~~~L~~L~l~~~~~~--~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~  278 (582)
                      ..+++++|++++|.+.....     . ..+++|+.|+++.+...  .......++..+++|++|++++|.+..+|..+..
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            34566666666665432211     0 14556666666554111  0011122334566666666666666556666666


Q ss_pred             ccCccEEEcCCCCCC----C-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEccccccccccc-CcccccCCCcc
Q 048810          279 LINLQTLCLDGCRLK----D-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVI-APNVISKLSRL  352 (582)
Q Consensus       279 L~~L~~L~L~~~~l~----~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~l-p~~~l~~l~~L  352 (582)
                      +++|++|+++.+...    . +..+..+++|+.|+++++....+|..+..+++|++|++++|. +... ....+..+++|
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNL  320 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCC
Confidence            666666666543211    1 344555566666666655555556555566666666666654 2221 11223556666


Q ss_pred             cEEEcC
Q 048810          353 EELYMG  358 (582)
Q Consensus       353 ~~L~l~  358 (582)
                      ++|++.
T Consensus       321 ~~L~L~  326 (592)
T 3ogk_B          321 EVLETR  326 (592)
T ss_dssp             CEEEEE
T ss_pred             CEEecc
Confidence            666665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.75  E-value=6e-17  Score=173.24  Aligned_cols=242  Identities=17%  Similarity=0.047  Sum_probs=171.8

Q ss_pred             HHHHHhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhccc
Q 048810          201 KKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLI  280 (582)
Q Consensus       201 ~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~  280 (582)
                      ..+|...+.+++.|++++|.+..+|.  .+++|++|++++|  ....+|.    .+++|++|++++|.++.+|.   .+.
T Consensus        53 ~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N--~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~  121 (622)
T 3g06_A           53 TTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGN--QLTSLPV----LPPGLLELSIFSNPLTHLPA---LPS  121 (622)
T ss_dssp             SCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSC--CCSCCCC----CCTTCCEEEECSCCCCCCCC---CCT
T ss_pred             CccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCC--cCCcCCC----CCCCCCEEECcCCcCCCCCC---CCC
Confidence            33443344789999999999999888  6899999999998  4556665    67999999999999999987   678


Q ss_pred             CccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCC
Q 048810          281 NLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN  359 (582)
Q Consensus       281 ~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~  359 (582)
                      +|++|++++|+++. |..   +++|++|++++|.++.+|.   .+.+|+.|++++ +.++.+|    ..+++|+.|++++
T Consensus       122 ~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~~~~~L~~L~Ls~  190 (622)
T 3g06_A          122 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----MLPSGLQELSVSD  190 (622)
T ss_dssp             TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----CCCTTCCEEECCS
T ss_pred             CcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----ccCCCCcEEECCC
Confidence            89999999999988 443   4899999999999998886   457899999999 5678787    3578999999999


Q ss_pred             CccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceee
Q 048810          360 SFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVS  439 (582)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~  439 (582)
                      |.+...         +.   .+++|+.|++++|.+..+|..  +++|+.|+++.+.. .......+.++.+.+..+.-..
T Consensus       191 N~l~~l---------~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L-~~lp~~l~~L~~L~Ls~N~L~~  255 (622)
T 3g06_A          191 NQLASL---------PT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRL-TSLPVLPSELKELMVSGNRLTS  255 (622)
T ss_dssp             SCCSCC---------CC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSC
T ss_pred             CCCCCC---------CC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCCcc-CcCCCCCCcCcEEECCCCCCCc
Confidence            875432         11   247899999999998888764  47888888876654 2222233344444444432211


Q ss_pred             hccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecC
Q 048810          440 ILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCS  490 (582)
Q Consensus       440 ~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  490 (582)
                      +   |.    .+++|+.|++++|.. +.+|..+.   .+++|+.|+|++|+
T Consensus       256 l---p~----~~~~L~~L~Ls~N~L-~~lp~~l~---~l~~L~~L~L~~N~  295 (622)
T 3g06_A          256 L---PM----LPSGLLSLSVYRNQL-TRLPESLI---HLSSETTVNLEGNP  295 (622)
T ss_dssp             C---CC----CCTTCCEEECCSSCC-CSCCGGGG---GSCTTCEEECCSCC
T ss_pred             C---Cc----ccccCcEEeCCCCCC-CcCCHHHh---hccccCEEEecCCC
Confidence            1   22    235555566655542 23333322   55556666665553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.74  E-value=2.6e-19  Score=193.31  Aligned_cols=347  Identities=12%  Similarity=0.044  Sum_probs=197.4

Q ss_pred             CcEEEEecCCCC---cCCCCCC-CCCCccEEEeeccCccccc---cChHHhcCCCCccEEEcCCCCCCC-----CChhhh
Q 048810          210 DPIAISLPYRGD---QVLPQRM-RCPRLGLFLLHTIGLCSIQ---VSDHFFEGMEGLKVLQFPGIGSSS-----LPSSLD  277 (582)
Q Consensus       210 ~~~~l~l~~~~~---~~l~~~~-~~~~L~~L~l~~~~~~~~~---~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~  277 (582)
                      ++++|++.+|..   ..++... .+++|+.|++.++ .....   ....++..+++|++|+++++.++.     ++..+.
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~  217 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR  217 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence            466666666541   0111111 4566666666665 11111   012234556667777776666652     334445


Q ss_pred             cccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCC----CccchhhcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810          278 RLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDI----EQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL  352 (582)
Q Consensus       278 ~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l----~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L  352 (582)
                      ++++|++|++++|.+.. +..+..+++|++|++++...    ...+..+..+++|++|++.+ .....+|.. +..+++|
T Consensus       218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~l~~~-~~~~~~L  295 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY-MGPNEMPIL-FPFAAQI  295 (592)
T ss_dssp             HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT-CCTTTGGGG-GGGGGGC
T ss_pred             hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccc-cchhHHHHH-HhhcCCC
Confidence            66667777777666665 55566666777777664311    13334456666777777666 334445543 6678889


Q ss_pred             cEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc--cCCccc-ccccccEEEEEe----------ccccc-
Q 048810          353 EELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE--ILPQDL-VSVELQRYKMFI----------GEARG-  418 (582)
Q Consensus       353 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~----------~~~~~-  418 (582)
                      ++|++++|.+...       .....+..+++|+.|++. +.+.  .++... .+++|+.|++..          +.... 
T Consensus       296 ~~L~Ls~~~l~~~-------~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~  367 (592)
T 3ogk_B          296 RKLDLLYALLETE-------DHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ  367 (592)
T ss_dssp             CEEEETTCCCCHH-------HHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred             cEEecCCCcCCHH-------HHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence            9999988874333       122346788999999998 3322  112112 578899999984          32211 


Q ss_pred             ----cccccccccccceecccceeehccccchHHHhhhcccceeecc---ccCccccccc--c-cCCCCCCCCcEEEEee
Q 048810          419 ----RWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLET---LEGVPSVVHE--L-DDGEGFPRLKHLYVES  488 (582)
Q Consensus       419 ----~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~---~~~~~~~~~~--~-~~~~~l~~L~~L~l~~  488 (582)
                          ......+.++.+.+... .+..- .+..+...+++|+.|++.+   +..++..+..  + .....+++|++|+++.
T Consensus       368 ~~~~~l~~~~~~L~~L~l~~~-~l~~~-~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~  445 (592)
T 3ogk_B          368 RGLIALAQGCQELEYMAVYVS-DITNE-SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL  445 (592)
T ss_dssp             HHHHHHHHHCTTCSEEEEEES-CCCHH-HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred             HHHHHHHhhCccCeEEEeecC-CccHH-HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence                11223566777766322 22110 0233444457899999974   3344432111  0 0023588999999987


Q ss_pred             cCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceee
Q 048810          489 CSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVG  568 (582)
Q Consensus       489 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~  568 (582)
                      |..  .+.+.........+++|+.|++++|. ++......+  ...+++|++|++++|+ ++.-.....+..+++|++|+
T Consensus       446 ~~~--~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~  519 (592)
T 3ogk_B          446 RQG--GLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEF--SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLW  519 (592)
T ss_dssp             CGG--GCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHH--HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEE
T ss_pred             CCC--CccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHH--HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeE
Confidence            653  11111111123457899999998754 433211111  3568999999999997 65432224567899999999


Q ss_pred             eccCcchH
Q 048810          569 VEECDELK  576 (582)
Q Consensus       569 i~~C~~L~  576 (582)
                      +++|+ ++
T Consensus       520 ls~n~-it  526 (592)
T 3ogk_B          520 VQGYR-AS  526 (592)
T ss_dssp             EESCB-CC
T ss_pred             CcCCc-CC
Confidence            99998 44

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=2.2e-17  Score=160.80  Aligned_cols=169  Identities=20%  Similarity=0.179  Sum_probs=125.5

Q ss_pred             CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCCCCCccccCCCCCccEE
Q 048810          229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVL  307 (582)
Q Consensus       229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L  307 (582)
                      .+++++.+++.++  ....+|..+   .+.+++|++++|.++.+ |..+..+++|++|++++|.++..+..+.+++|++|
T Consensus         8 ~l~~l~~l~~~~~--~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKR--NLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTS--CCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred             ccCCccEEECCCC--CCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence            5677888888776  455666654   36788888888888775 45688888888888888888884444788888888


Q ss_pred             EeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEE
Q 048810          308 SFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTL  387 (582)
Q Consensus       308 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  387 (582)
                      ++++|.++.+|..+..+++|++|++++ +.++.+|++.+..+++|++|++++|.+...        ....+..+++|+.|
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTL--------PPGLLTPTPKLEKL  153 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCC--------CTTTTTTCTTCCEE
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCcc--------ChhhcccccCCCEE
Confidence            888888888888888888888888888 567777766678888888888888866543        23446678888888


Q ss_pred             EEEecccccCCccc--ccccccEEEE
Q 048810          388 EIHVRYAEILPQDL--VSVELQRYKM  411 (582)
Q Consensus       388 ~l~~~~~~~~~~~~--~~~~L~~L~l  411 (582)
                      ++++|.+..+|...  .+++|+.|++
T Consensus       154 ~L~~N~l~~l~~~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          154 SLANNNLTELPAGLLNGLENLDTLLL  179 (290)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ECCCCcCCccCHHHhcCcCCCCEEEC
Confidence            88888777666543  3444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.73  E-value=6.8e-18  Score=159.79  Aligned_cols=198  Identities=14%  Similarity=0.190  Sum_probs=157.4

Q ss_pred             HHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCC-CCCCCCC-hhhh
Q 048810          202 KMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPG-IGSSSLP-SSLD  277 (582)
Q Consensus       202 ~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~i~  277 (582)
                      .+|. .+..++.+++++|.+..++..  ..+++|+.|+++++ .....++...|.++++|++|++++ |.++.+| ..+.
T Consensus        25 ~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~  102 (239)
T 2xwt_C           25 RIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK  102 (239)
T ss_dssp             SCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred             ccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence            3344 556889999999999888763  37899999999987 226677777778999999999998 8888876 4678


Q ss_pred             cccCccEEEcCCCCCCCccccCCCCCcc---EEEeeCC-CCCccchh-hcCCCCCC-EEcccccccccccCcccccCCCc
Q 048810          278 RLINLQTLCLDGCRLKDIAKVGQLKKLE---VLSFRDS-DIEQLPLE-IGQLRRLQ-LLDLSNCWTLEVIAPNVISKLSR  351 (582)
Q Consensus       278 ~L~~L~~L~L~~~~l~~~~~~~~l~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~l~~~~~l~~lp~~~l~~l~~  351 (582)
                      .+++|++|++++|.++..+.++.+.+|+   +|++++| .++.+|.. +..+++|+ +|++++ +.++.+|...+.. ++
T Consensus       103 ~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~-~~  180 (239)
T 2xwt_C          103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG-TK  180 (239)
T ss_dssp             CCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT-CE
T ss_pred             CCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC-CC
Confidence            8999999999999988844488888887   9999999 89888765 78899999 999988 5677888775544 88


Q ss_pred             ccEEEcCCCc-cccccccCCCccchhhccCC-CCccEEEEEecccccCCcccccccccEEEEE
Q 048810          352 LEELYMGNSF-KRWEKVEGGSNASLVELNGL-SKLTTLEIHVRYAEILPQDLVSVELQRYKMF  412 (582)
Q Consensus       352 L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  412 (582)
                      |++|++++|. +...        ....+..+ ++|+.|++++|.+..+|.. .+++|+.|++.
T Consensus       181 L~~L~L~~n~~l~~i--------~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~  234 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVI--------DKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR  234 (239)
T ss_dssp             EEEEECTTCTTCCEE--------CTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred             CCEEEcCCCCCcccC--------CHHHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence            9999999884 5433        23457778 8999999999998888776 67788887753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=5.6e-17  Score=154.66  Aligned_cols=175  Identities=20%  Similarity=0.265  Sum_probs=142.1

Q ss_pred             cCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEc
Q 048810          209 KDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCL  287 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L  287 (582)
                      ...++++++++.+..+|.... ++++.|+++++  ....++...|.++++|++|++++|.++.++. .+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQST--GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCCC-CCCCEEEccCC--CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            355788999999988887664 68899999887  4555666667889999999999999988654 5788999999999


Q ss_pred             CCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          288 DGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       288 ~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      ++|.++.  +..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.+|+..++.+++|++|++++|.+..
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            9999888  35678899999999999999988876 57889999999998 57888887668889999999999887654


Q ss_pred             ccccCCCccchhhccCCCCccEEEEEecccc
Q 048810          365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAE  395 (582)
Q Consensus       365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  395 (582)
                      .        ....+..+++|+.|++++|.+.
T Consensus       170 ~--------~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          170 V--------PHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             C--------CTTTTTTCTTCCEEECCSCCBC
T ss_pred             c--------CHHHHhCCCCCCEEEeeCCcee
Confidence            4        3346778888888888888765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=2.9e-17  Score=159.11  Aligned_cols=143  Identities=18%  Similarity=0.216  Sum_probs=79.6

Q ss_pred             EecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCC
Q 048810          215 SLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLK  293 (582)
Q Consensus       215 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~  293 (582)
                      +-.+..+..+|.... ++++.|+++++  ....++...|.++++|++|++++|.++.++. .+..+++|++|++++|.++
T Consensus        13 ~c~~~~l~~ip~~l~-~~l~~L~ls~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           13 QCMELNFYKIPDNLP-FSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             ECTTSCCSSCCSSSC-TTCCEEECTTC--CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EecCCCccccCCCCC-CCccEEECCCC--cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            334444555554332 35666666655  3444444445566666666666666655442 4566666666666666665


Q ss_pred             C--ccccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccc--cCcccccCCCcccEEEcCCCcc
Q 048810          294 D--IAKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEV--IAPNVISKLSRLEELYMGNSFK  362 (582)
Q Consensus       294 ~--~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~  362 (582)
                      .  +..+.++++|++|++++|.+..++. .++.+++|++|++++ +.+..  +|.. ++.+++|++|++++|.+
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred             ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchh-hccCCCCCEEECCCCCC
Confidence            5  3455666666666666666665544 355666666666666 33433  3333 55566666666666544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.71  E-value=3.9e-17  Score=157.71  Aligned_cols=175  Identities=21%  Similarity=0.241  Sum_probs=94.0

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCcc
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQ  283 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~  283 (582)
                      ......++.+++.++.+..++....+++|+.|+++++  ....++  .+..+++|++|++++|.++.+|. .++.+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n--~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN--KLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTS--CCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCC--CCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            3345566777777776666555445566666666555  222222  23555666666666666555443 245556666


Q ss_pred             EEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810          284 TLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS  360 (582)
Q Consensus       284 ~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (582)
                      +|++++|+++. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .++.+++..++.+++|++|++++|
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC
Confidence            66666665555 2 2355556666666666655555443 355556666666652 444555444455556666665555


Q ss_pred             ccccccccCCCccchhhccCCCCccEEEEEec
Q 048810          361 FKRWEKVEGGSNASLVELNGLSKLTTLEIHVR  392 (582)
Q Consensus       361 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  392 (582)
                      .+...        .+..+..+++|+.|++++|
T Consensus       192 ~l~~~--------~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          192 QLKSV--------PDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CCSCC--------CTTTTTTCTTCCEEECCSS
T ss_pred             cCCcc--------CHHHHhCCcCCCEEEccCC
Confidence            44322        1223445555555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.71  E-value=1.9e-19  Score=188.14  Aligned_cols=347  Identities=17%  Similarity=0.096  Sum_probs=229.4

Q ss_pred             ccCcEEEEecCCCCcCCCC---CCCCCCccEEEeeccCcccc---ccChHHhcCCCCccEEEcCCCCCCC-CChhh-hcc
Q 048810          208 RKDPIAISLPYRGDQVLPQ---RMRCPRLGLFLLHTIGLCSI---QVSDHFFEGMEGLKVLQFPGIGSSS-LPSSL-DRL  279 (582)
Q Consensus       208 ~~~~~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i-~~L  279 (582)
                      +.++++++++++.+...+.   ...+++|+.|+++++.-...   .+ ...+..+++|++|++++|.++. .+..+ ..+
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI-SSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHH-HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHH-HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            4578999999998854332   12688999999998831111   22 2445788999999999999865 22233 345


Q ss_pred             c----CccEEEcCCCCCCC------ccccCCCCCccEEEeeCCCCCcc-chhh-----cCCCCCCEEcccccccccc---
Q 048810          280 I----NLQTLCLDGCRLKD------IAKVGQLKKLEVLSFRDSDIEQL-PLEI-----GQLRRLQLLDLSNCWTLEV---  340 (582)
Q Consensus       280 ~----~L~~L~L~~~~l~~------~~~~~~l~~L~~L~l~~~~l~~l-p~~i-----~~l~~L~~L~l~~~~~l~~---  340 (582)
                      .    +|++|++++|.++.      +..+..+++|++|++++|.+... +..+     ...++|++|++++| .++.   
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~  159 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASC  159 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHH
Confidence            5    69999999999884      57789999999999999988732 2222     23568999999996 4443   


Q ss_pred             --cCcccccCCCcccEEEcCCCccccccccCCCccchhhcc-----CCCCccEEEEEecccccC-----Cccc-cccccc
Q 048810          341 --IAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELN-----GLSKLTTLEIHVRYAEIL-----PQDL-VSVELQ  407 (582)
Q Consensus       341 --lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-----~~~~-~~~~L~  407 (582)
                        ++. .+..+++|++|++++|.+...        .+..+.     ..++|+.|++++|.+...     +..+ .+++|+
T Consensus       160 ~~l~~-~l~~~~~L~~L~L~~n~i~~~--------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  230 (461)
T 1z7x_W          160 EPLAS-VLRAKPDFKELTVSNNDINEA--------GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  230 (461)
T ss_dssp             HHHHH-HHHHCTTCCEEECCSSBCHHH--------HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             HHHHH-HHhhCCCCCEEECcCCCcchH--------HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence              233 367789999999999876443        223332     367999999999988753     3333 678999


Q ss_pred             EEEEEecccc--------ccccccccccccceecccceeeh----ccccchHHHhhhcccceeeccccCccccccccc--
Q 048810          408 RYKMFIGEAR--------GRWFVKSETSRLMKLERLKSVSI----LLRNPGMRMLLQRTEDLWLETLEGVPSVVHELD--  473 (582)
Q Consensus       408 ~L~l~~~~~~--------~~~~~~~~~l~~l~l~~~~~~~~----l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~--  473 (582)
                      .|+++.+...        ..+....+.++.+.+..+.-...    +  +..+.. +++|++|++++|......+..+.  
T Consensus       231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l--~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~  307 (461)
T 1z7x_W          231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL--CRVLRA-KESLKELSLAGNELGDEGARLLCET  307 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH--HHHHHH-CTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred             EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH--HHHHhh-CCCcceEECCCCCCchHHHHHHHHH
Confidence            9999876541        11122456778888877632211    1  233333 48899999998864322221111  


Q ss_pred             CCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccC-c-ccCCCccEEEEecccCcc-
Q 048810          474 DGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLRE-D-QSFSNLRIIEVEHCNKLK-  550 (582)
Q Consensus       474 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~-~-~~~~~L~~L~l~~c~~L~-  550 (582)
                      .....++|++|++++|. +..............+++|+.|+++++ .+.......+.+ . ...++|++|++++| +++ 
T Consensus       308 l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~  384 (461)
T 1z7x_W          308 LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSD  384 (461)
T ss_dssp             HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCH
T ss_pred             hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCCh
Confidence            01234799999999985 222100000112345689999999985 555443221110 1 12679999999999 566 


Q ss_pred             ----cccChhHHhhhhhcceeeeccCc
Q 048810          551 ----HLFSFSMAKNLLWLQKVGVEECD  573 (582)
Q Consensus       551 ----~l~~~~~~~~l~~L~~L~i~~C~  573 (582)
                          .++  ..+..+++|++|++++|+
T Consensus       385 ~~~~~l~--~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          385 SSCSSLA--ATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHHH--HHHHHCCCCCEEECCSSS
T ss_pred             hhHHHHH--HHHHhCCCccEEECCCCC
Confidence                444  356789999999999985

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.71  E-value=4.5e-17  Score=154.12  Aligned_cols=100  Identities=16%  Similarity=0.255  Sum_probs=49.7

Q ss_pred             CccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCC-CCC-c-cccCCCCCccEEEeeC-CCCCccch-hhcCCCCCCEEc
Q 048810          258 GLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCR-LKD-I-AKVGQLKKLEVLSFRD-SDIEQLPL-EIGQLRRLQLLD  331 (582)
Q Consensus       258 ~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~-l~~-~-~~~~~l~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~  331 (582)
                      .|++|++++|.++.+|. .++.+++|++|++++|+ ++. + ..+..+++|++|++++ |.++.+|. .+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555554443 44455555555555554 444 2 2445555555555555 45554443 244555555555


Q ss_pred             ccccccccccCcccccCCCccc---EEEcCCC
Q 048810          332 LSNCWTLEVIAPNVISKLSRLE---ELYMGNS  360 (582)
Q Consensus       332 l~~~~~l~~lp~~~l~~l~~L~---~L~l~~~  360 (582)
                      +++ +.++.+|.  ++.+++|+   +|++++|
T Consensus       112 l~~-n~l~~lp~--~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          112 IFN-TGLKMFPD--LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             EEE-ECCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred             CCC-CCCccccc--cccccccccccEEECCCC
Confidence            555 23444443  44455554   5555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.71  E-value=1.7e-16  Score=153.23  Aligned_cols=188  Identities=18%  Similarity=0.225  Sum_probs=151.1

Q ss_pred             EEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCC
Q 048810          214 ISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLK  293 (582)
Q Consensus       214 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~  293 (582)
                      +.+..+.+........+++|+.|.+.++  ....++.  +..+++|++|++++|.++.++ .++.+++|++|++++|.++
T Consensus        24 l~l~~~~~~~~~~~~~l~~L~~L~l~~~--~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~   98 (272)
T 3rfs_A           24 ANLKKKSVTDAVTQNELNSIDQIIANNS--DIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQ   98 (272)
T ss_dssp             HHHTCSCTTSEECHHHHTTCCEEECTTS--CCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCC
T ss_pred             HHhcCcccccccccccccceeeeeeCCC--Ccccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccC
Confidence            3444455544444447888999999887  3444443  578999999999999998875 7889999999999999998


Q ss_pred             C-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCC
Q 048810          294 D-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGG  370 (582)
Q Consensus       294 ~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~  370 (582)
                      . + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .++.+|+..++.+++|++|++++|.+...     
T Consensus        99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----  172 (272)
T 3rfs_A           99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSL-----  172 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC-----
T ss_pred             ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCcc-----
Confidence            8 3 4578999999999999999988766 688999999999994 67888877678999999999999976543     


Q ss_pred             CccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEecc
Q 048810          371 SNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGE  415 (582)
Q Consensus       371 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~  415 (582)
                         ....++.+++|+.|++++|.+..++...  .+++|+.|++..+.
T Consensus       173 ---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          173 ---PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             ---CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence               3345688999999999999998887764  78899999987654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=2.2e-16  Score=153.92  Aligned_cols=176  Identities=21%  Similarity=0.274  Sum_probs=145.1

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT  284 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~  284 (582)
                      .....+++.+++++|.+..++....+++|+.|+++++  ....++.  +..+++|++|++++|.++.+|. ++.+++|++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n--~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~  116 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN--KLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS  116 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred             hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCC--ccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence            3446788999999999988877668899999999987  4445554  6889999999999999988764 889999999


Q ss_pred             EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      |++++|.++.++.+..+++|++|++++|.++.+ ..++.+++|++|++++ +.+..+++  +..+++|++|++++|.+..
T Consensus       117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcCCC
Confidence            999999988877888999999999999998888 4688899999999998 46777776  7889999999999886543


Q ss_pred             ccccCCCccchhhccCCCCccEEEEEecccccCCc
Q 048810          365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQ  399 (582)
Q Consensus       365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  399 (582)
                                ...+..+++|+.|++++|.+...+.
T Consensus       193 ----------l~~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          193 ----------LRALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             ----------CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred             ----------ChhhccCCCCCEEECcCCcccCCcc
Confidence                      2457888999999999887765443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.70  E-value=1e-18  Score=188.71  Aligned_cols=348  Identities=14%  Similarity=0.039  Sum_probs=188.9

Q ss_pred             hccCcEEEEecCCCCcCC-CCCC--CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-----CChhhhc
Q 048810          207 IRKDPIAISLPYRGDQVL-PQRM--RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-----LPSSLDR  278 (582)
Q Consensus       207 ~~~~~~~l~l~~~~~~~l-~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~  278 (582)
                      ...++++++++++.+... ...+  .+++|+.|++.++..........++..+++|++|++++|.++.     ++.....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            345777777777765321 1111  4677888888766211111123444567788888888777544     2222335


Q ss_pred             ccCccEEEcCCCC--CCC--c-cccCCCCCccEEEeeCC-CCCccchhhcCCCCCCEEcccccc----------------
Q 048810          279 LINLQTLCLDGCR--LKD--I-AKVGQLKKLEVLSFRDS-DIEQLPLEIGQLRRLQLLDLSNCW----------------  336 (582)
Q Consensus       279 L~~L~~L~L~~~~--l~~--~-~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~----------------  336 (582)
                      +++|++|++++|.  +..  + ..+..+++|++|++++| .+..+|..+..+++|++|++..|.                
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~  262 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS  262 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence            6678888887775  221  1 22344677888888777 455666666677777777654331                


Q ss_pred             ---cc-----------cccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccccc--CCcc
Q 048810          337 ---TL-----------EVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEI--LPQD  400 (582)
Q Consensus       337 ---~l-----------~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~  400 (582)
                         .+           ..++. .+..+++|++|++++|.+...       .....+..+++|++|+++++ +..  ++..
T Consensus       263 ~~~~L~~Ls~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~-------~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l  333 (594)
T 2p1m_B          263 GCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATVQSY-------DLVKLLCQCPKLQRLWVLDY-IEDAGLEVL  333 (594)
T ss_dssp             TCTTCCEEECCBTCCGGGGGG-GHHHHTTCCEEECTTCCCCHH-------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred             cCCCcccccCCcccchhhHHH-HHHhhCCCCEEEccCCCCCHH-------HHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence               11           11222 123567888888888763322       12233567888888888876 221  1111


Q ss_pred             c-ccccccEEEEEecc--------ccc-----cccccccccccceecccceeehccccchHHHhhhcccceeec-----c
Q 048810          401 L-VSVELQRYKMFIGE--------ARG-----RWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLE-----T  461 (582)
Q Consensus       401 ~-~~~~L~~L~l~~~~--------~~~-----~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~-----~  461 (582)
                      . .+++|+.|++..+.        ...     ......+.++.+.+.. ..+... ....+...+++|+.|++.     +
T Consensus       334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~-~~~~l~~~~~~L~~L~L~~~~~~~  411 (594)
T 2p1m_B          334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNA-ALITIARNRPNMTRFRLCIIEPKA  411 (594)
T ss_dssp             HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHH-HHHHHHHHCTTCCEEEEEESSTTC
T ss_pred             HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHH-HHHHHHhhCCCcceeEeecccCCC
Confidence            1 46788888885421        100     0111234555553322 122110 012233335788888887     3


Q ss_pred             ccCccccccc--cc-CCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCc
Q 048810          462 LEGVPSVVHE--LD-DGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNL  538 (582)
Q Consensus       462 ~~~~~~~~~~--~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L  538 (582)
                      |..++..+..  +. .+..+++|++|++++  .+..   .........+++|+.|++++|. ++......+  ...+++|
T Consensus       412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~---~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l--~~~~~~L  483 (594)
T 2p1m_B          412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTD---KVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHV--LSGCDSL  483 (594)
T ss_dssp             CCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCH---HHHHHHHHHCTTCCEEEEESCC-SSHHHHHHH--HHHCTTC
T ss_pred             cccccCCchhhHHHHHHhhCCCccEEeecC--cccH---HHHHHHHHhchhccEeeccCCC-CcHHHHHHH--HhcCCCc
Confidence            4444422210  00 023577888888855  2221   1000011236788888888754 322211111  1457899


Q ss_pred             cEEEEecccCcccccChhHHhhhhhcceeeeccCcc
Q 048810          539 RIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDE  574 (582)
Q Consensus       539 ~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~  574 (582)
                      ++|++++|+- +.......+..+++|++|++++|+.
T Consensus       484 ~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          484 RKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             CEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            9999999864 4332223445688999999999976

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.69  E-value=5.1e-17  Score=160.28  Aligned_cols=34  Identities=12%  Similarity=0.046  Sum_probs=18.5

Q ss_pred             hcccceeeccccCcccccccccCCCCCCCCcEEEEeecC
Q 048810          452 QRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCS  490 (582)
Q Consensus       452 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  490 (582)
                      ++|++|++++|..... +. +   ..+++|++|++++++
T Consensus       274 ~~L~~L~Ls~N~l~~~-p~-~---~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRN-PS-P---DELPQVGNLSLKGNP  307 (312)
T ss_dssp             SEEEEEECCSSCCCSC-CC-T---TTSCEEEEEECTTCT
T ss_pred             CCceEEECCCCCCCCC-hh-H---hhCCCCCEEeccCCC
Confidence            4556666666655443 22 2   256666666666653

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.69  E-value=1.6e-16  Score=171.14  Aligned_cols=165  Identities=18%  Similarity=0.261  Sum_probs=132.2

Q ss_pred             ceEEc---cCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHHhcccccc
Q 048810            5 KEIQI---DVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKE   81 (582)
Q Consensus         5 ~~~~l---~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~   81 (582)
                      .+|++   ++|+.+||++||.+.++..  .....+.+.+|+++|+|+||||+.+|+.|+.+. ..|+.+++.+.......
T Consensus       276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~  352 (591)
T 1z6t_A          276 PKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKR  352 (591)
T ss_dssp             CEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCC
T ss_pred             CceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHH
Confidence            45666   4899999999999999742  233356889999999999999999999999763 37999999987654321


Q ss_pred             c----cchhhhHHHHHHHHHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHHHHH
Q 048810           82 I----DGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLK  157 (582)
Q Consensus        82 ~----~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~~L~  157 (582)
                      +    ......+..++..||+.||++ .|.||+++|+||+++.|+.+.++..|.+++        ++    +.+++++|+
T Consensus       353 ~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~~----~~~~l~~L~  419 (591)
T 1z6t_A          353 IRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET--------EE----VEDILQEFV  419 (591)
T ss_dssp             SSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------HH----HHHHHHHHH
T ss_pred             hhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH--------HH----HHHHHHHHH
Confidence            1    112367899999999999998 899999999999999999999999996642        22    345788899


Q ss_pred             hccccccC--CCCccEEhhhHHHHHHHHHh
Q 048810          158 SLCLLLDG--DAEDEVKMHDVIRVVAVSIA  185 (582)
Q Consensus       158 ~~~l~~~~--~~~~~~~mhdl~~~l~~~~~  185 (582)
                      ++|+++..  +....|+||+++++++....
T Consensus       420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             HTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred             hCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence            99999754  23457999999999998773

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.69  E-value=5.1e-16  Score=152.61  Aligned_cols=177  Identities=20%  Similarity=0.227  Sum_probs=154.9

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT  284 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~  284 (582)
                      .....+++.|++++|.+..++....+++|+.|+++++  ....++  .+..+++|++|++++|.++.+|. +..+++|++
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n--~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~  133 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN--PLKNVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQV  133 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSC--CCSCCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred             hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCC--cCCCch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCE
Confidence            5567899999999999988888668999999999998  344444  36899999999999999999875 999999999


Q ss_pred             EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      |++++|.++..+.++.+++|++|++++|.++.++. +..+++|++|++++ +.+..+++  +..+++|++|++++|.+..
T Consensus       134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD-NKISDISP--LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred             EECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC-CccCcChh--hcCCCCCCEEEccCCccCc
Confidence            99999999995559999999999999999999887 99999999999999 56788876  7899999999999997654


Q ss_pred             ccccCCCccchhhccCCCCccEEEEEecccccCCcc
Q 048810          365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD  400 (582)
Q Consensus       365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  400 (582)
                      .          ..+..+++|+.|++++|.+...|..
T Consensus       210 ~----------~~l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          210 V----------SPLANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             C----------GGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred             c----------ccccCCCCCCEEEccCCeeecCCee
Confidence            3          2488999999999999998776654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.69  E-value=3e-18  Score=185.10  Aligned_cols=357  Identities=15%  Similarity=0.084  Sum_probs=212.6

Q ss_pred             hccCcEEEEecCCCC-cCC---CCC-------------CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCC-C
Q 048810          207 IRKDPIAISLPYRGD-QVL---PQR-------------MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGI-G  268 (582)
Q Consensus       207 ~~~~~~~l~l~~~~~-~~l---~~~-------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~  268 (582)
                      ...+++.+++.++.. ..+   |..             ..+++|+.|+++++ ......+..+...+++|++|++++| .
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~  142 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEG  142 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence            345688888887642 111   111             15789999999987 3333333444346899999999998 5


Q ss_pred             CCC--CChhhhcccCccEEEcCCCCCCC--cccc----CCCCCccEEEeeCCC--CC--ccchhhcCCCCCCEEcccccc
Q 048810          269 SSS--LPSSLDRLINLQTLCLDGCRLKD--IAKV----GQLKKLEVLSFRDSD--IE--QLPLEIGQLRRLQLLDLSNCW  336 (582)
Q Consensus       269 ~~~--lp~~i~~L~~L~~L~L~~~~l~~--~~~~----~~l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~  336 (582)
                      ++.  ++..+..+++|++|++++|.+++  +..+    ..+++|++|++++|.  +.  .++.-+..+++|++|++++|.
T Consensus       143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~  222 (594)
T 2p1m_B          143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV  222 (594)
T ss_dssp             EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred             CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence            544  56666689999999999998765  3333    367899999999986  32  334445668999999999987


Q ss_pred             cccccCcccccCCCcccEEEcCCCcccc--c-------------------ccc-CCCccchhhccCCCCccEEEEEeccc
Q 048810          337 TLEVIAPNVISKLSRLEELYMGNSFKRW--E-------------------KVE-GGSNASLVELNGLSKLTTLEIHVRYA  394 (582)
Q Consensus       337 ~l~~lp~~~l~~l~~L~~L~l~~~~~~~--~-------------------~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~  394 (582)
                      .++.++.. +..+++|++|++..+....  .                   ... .........+..+++|++|++++|.+
T Consensus       223 ~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l  301 (594)
T 2p1m_B          223 PLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV  301 (594)
T ss_dssp             CHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred             cHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence            77776654 7889999999876553100  0                   000 00111222233567788888877764


Q ss_pred             ccC--Cccc-ccccccEEEEEeccc---cccccccccccccceecc--------cceeehccccchHHHhhhcccceeec
Q 048810          395 EIL--PQDL-VSVELQRYKMFIGEA---RGRWFVKSETSRLMKLER--------LKSVSILLRNPGMRMLLQRTEDLWLE  460 (582)
Q Consensus       395 ~~~--~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~~l~~l~l~~--------~~~~~~l~~~~~i~~~~~~L~~L~L~  460 (582)
                      ...  ...+ .+++|+.|.+..+-.   ........+.++.+.+..        +..+... ....+...+++|+.|.+.
T Consensus       302 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~-~l~~l~~~~~~L~~L~~~  380 (594)
T 2p1m_B          302 QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVSMGCPKLESVLYF  380 (594)
T ss_dssp             CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH-HHHHHHHHCTTCCEEEEE
T ss_pred             CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH-HHHHHHHhchhHHHHHHh
Confidence            321  1111 567788888775521   011122345566666632        1122110 011122224778888554


Q ss_pred             cccCcccc-cccccCCCCCCCCcEEEEe-----ecCCceeeeccc-ccccCCCCcccccccccccccccccccccccCcc
Q 048810          461 TLEGVPSV-VHELDDGEGFPRLKHLYVE-----SCSEILHIVGSV-RRVGCEVFPLLETLYLIGLANLETICCSQLREDQ  533 (582)
Q Consensus       461 ~~~~~~~~-~~~~~~~~~l~~L~~L~l~-----~~~~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~  533 (582)
                      .+. ++.. ...+  ...+|+|++|++.     +|..++..+... .......+++|+.|++++  ++.......+  ..
T Consensus       381 ~~~-l~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l--~~  453 (594)
T 2p1m_B          381 CRQ-MTNAALITI--ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI--GT  453 (594)
T ss_dssp             ESC-CCHHHHHHH--HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHH--HH
T ss_pred             cCC-cCHHHHHHH--HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHH--HH
Confidence            433 3322 1111  1247888999888     455554332110 000134567888888865  4433221111  12


Q ss_pred             cCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcc
Q 048810          534 SFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDE  574 (582)
Q Consensus       534 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~  574 (582)
                      .+++|+.|++++|. ++..........+++|++|+|++|+.
T Consensus       454 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          454 YAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             HCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             hchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            37899999999985 54432222346789999999999986

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.68  E-value=2.7e-16  Score=157.75  Aligned_cols=236  Identities=14%  Similarity=0.095  Sum_probs=146.6

Q ss_pred             cEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCC-ccchh-hcCCCCCCEEccccc
Q 048810          260 KVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIE-QLPLE-IGQLRRLQLLDLSNC  335 (582)
Q Consensus       260 r~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~-~lp~~-i~~l~~L~~L~l~~~  335 (582)
                      ++++.+++.++++|..+.  .++++|+|++|+++. + ..+.++++|++|++++|.+. .+|.. +.++++|+++...++
T Consensus        12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            567788888888887663  578888888888887 4 45788888888888888764 45543 567777777666555


Q ss_pred             ccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEe-cccccCCccc--cc-ccccEEEE
Q 048810          336 WTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHV-RYAEILPQDL--VS-VELQRYKM  411 (582)
Q Consensus       336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~--~~-~~L~~L~l  411 (582)
                      +.+..++++.+..+++|++|++++|.+...        ....+....++..|++.. +.+..++...  .+ ..++.|++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~--------~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHL--------PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  161 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSC--------CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             CcccccCchhhhhccccccccccccccccC--------Cchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence            778888777677888888888877765332        112223344566666653 3455444432  11 23444443


Q ss_pred             EeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCC
Q 048810          412 FIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSE  491 (582)
Q Consensus       412 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  491 (582)
                      +.+..                     -.+   +..+.. ..+|++|.+.++..++.++...  ++.+++|++|+++++ .
T Consensus       162 ~~N~i---------------------~~i---~~~~f~-~~~L~~l~l~~~n~l~~i~~~~--f~~l~~L~~LdLs~N-~  213 (350)
T 4ay9_X          162 NKNGI---------------------QEI---HNSAFN-GTQLDELNLSDNNNLEELPNDV--FHGASGPVILDISRT-R  213 (350)
T ss_dssp             CSSCC---------------------CEE---CTTSST-TEEEEEEECTTCTTCCCCCTTT--TTTEECCSEEECTTS-C
T ss_pred             ccccc---------------------cCC---Chhhcc-ccchhHHhhccCCcccCCCHHH--hccCcccchhhcCCC-C
Confidence            32221                     011   222211 2567777777666666665432  346777777777776 4


Q ss_pred             ceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEec
Q 048810          492 ILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEH  545 (582)
Q Consensus       492 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~  545 (582)
                      ++.++       ...|.+|+.|.+.++.+++.+|.     ...+++|+.+++.+
T Consensus       214 l~~lp-------~~~~~~L~~L~~l~~~~l~~lP~-----l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          214 IHSLP-------SYGLENLKKLRARSTYNLKKLPT-----LEKLVALMEASLTY  255 (350)
T ss_dssp             CCCCC-------SSSCTTCCEEECTTCTTCCCCCC-----TTTCCSCCEEECSC
T ss_pred             cCccC-------hhhhccchHhhhccCCCcCcCCC-----chhCcChhhCcCCC
Confidence            55553       34566777777777777766653     45677777777754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.67  E-value=3.6e-16  Score=152.33  Aligned_cols=182  Identities=22%  Similarity=0.243  Sum_probs=152.8

Q ss_pred             ecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCc
Q 048810          216 LPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDI  295 (582)
Q Consensus       216 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~  295 (582)
                      +..+.+........+++|+.|+++++  ....++.  +..+++|++|++++|.++.++. ++.+++|++|++++|.++.+
T Consensus        31 l~~~~~~~~~~~~~l~~L~~L~l~~~--~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~  105 (291)
T 1h6t_A           31 LKKKSVTDAVTQNELNSIDQIIANNS--DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL  105 (291)
T ss_dssp             TTCSCTTSEECHHHHHTCCEEECTTS--CCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG
T ss_pred             hcCCCcccccchhhcCcccEEEccCC--CcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC
Confidence            44444444433446889999999987  4445543  5889999999999999999887 99999999999999999997


Q ss_pred             cccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccch
Q 048810          296 AKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASL  375 (582)
Q Consensus       296 ~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  375 (582)
                      +.+..+++|++|++++|.++.++ .+..+++|++|++++ +.+..++.  ++.+++|++|++++|.+...         .
T Consensus       106 ~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~l~~~---------~  172 (291)
T 1h6t_A          106 SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISDI---------V  172 (291)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCCC---------G
T ss_pred             hhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcchh--hccCCCCCEEEccCCccccc---------h
Confidence            78999999999999999999885 589999999999999 56777743  89999999999999976443         2


Q ss_pred             hhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc
Q 048810          376 VELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA  416 (582)
Q Consensus       376 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  416 (582)
                       .+..+++|+.|++++|.+..++....+++|+.|++..+..
T Consensus       173 -~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          173 -PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             -GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred             -hhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence             2889999999999999999887655889999999987654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.67  E-value=4.4e-17  Score=162.68  Aligned_cols=223  Identities=17%  Similarity=0.163  Sum_probs=125.6

Q ss_pred             ccEEEeeccCccccccChHHhcCC--CCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC---ccccCCCCCccEE
Q 048810          233 LGLFLLHTIGLCSIQVSDHFFEGM--EGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD---IAKVGQLKKLEVL  307 (582)
Q Consensus       233 L~~L~l~~~~~~~~~~~~~~~~~l--~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~---~~~~~~l~~L~~L  307 (582)
                      ++.++++++  .   +.+..+..+  +++++|+++++.+...+..+..+++|++|++++|.+..   +..+..+++|++|
T Consensus        49 ~~~l~l~~~--~---~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGK--N---LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTC--B---CCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccc--c---CCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            556666654  1   113334444  66777777777766655556666777777777776654   3456666777777


Q ss_pred             EeeCCCCC-ccchhhcCCCCCCEEcccccccccc--cCcccccCCCcccEEEcCCC-ccccccccCCCccchhhccCCC-
Q 048810          308 SFRDSDIE-QLPLEIGQLRRLQLLDLSNCWTLEV--IAPNVISKLSRLEELYMGNS-FKRWEKVEGGSNASLVELNGLS-  382 (582)
Q Consensus       308 ~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~-  382 (582)
                      ++++|.+. ..|..++.+++|++|++++|..++.  ++.. +..+++|++|++++| .+...       .....+..++ 
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~-------~~~~~~~~l~~  195 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK-------HVQVAVAHVSE  195 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH-------HHHHHHHHSCT
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH-------HHHHHHHhccc
Confidence            77776665 4555666667777777776544442  3332 556666666666666 33221       1233345555 


Q ss_pred             CccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccc
Q 048810          383 KLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETL  462 (582)
Q Consensus       383 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~  462 (582)
                      +|++|++++|...                    .                .   .-..   +..+.. +++|+.|++++|
T Consensus       196 ~L~~L~l~~~~~~--------------------~----------------~---~~~l---~~~~~~-~~~L~~L~l~~~  232 (336)
T 2ast_B          196 TITQLNLSGYRKN--------------------L----------------Q---KSDL---STLVRR-CPNLVHLDLSDS  232 (336)
T ss_dssp             TCCEEECCSCGGG--------------------S----------------C---HHHH---HHHHHH-CTTCSEEECTTC
T ss_pred             CCCEEEeCCCccc--------------------C----------------C---HHHH---HHHHhh-CCCCCEEeCCCC
Confidence            5555555544210                    0                0   0000   222233 478888888888


Q ss_pred             cCcc-cccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccccc
Q 048810          463 EGVP-SVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGL  518 (582)
Q Consensus       463 ~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~  518 (582)
                      ..++ ..+..   ++.+++|++|++++|..+..   .. ......+++|+.|++++|
T Consensus       233 ~~l~~~~~~~---l~~l~~L~~L~l~~~~~~~~---~~-~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          233 VMLKNDCFQE---FFQLNYLQHLSLSRCYDIIP---ET-LLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCCGGGGGG---GGGCTTCCEEECTTCTTCCG---GG-GGGGGGCTTCCEEECTTS
T ss_pred             CcCCHHHHHH---HhCCCCCCEeeCCCCCCCCH---HH-HHHHhcCCCCCEEeccCc
Confidence            7443 23333   34778888888888853221   10 112345777777777776

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.66  E-value=6.3e-16  Score=147.31  Aligned_cols=163  Identities=22%  Similarity=0.291  Sum_probs=140.3

Q ss_pred             hhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hh
Q 048810          199 LEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SS  275 (582)
Q Consensus       199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~  275 (582)
                      .+..+|...+..++.|++++|.+..++..  ..+++|+.|+++++  ....++...|..+++|++|++++|.++.+| ..
T Consensus        25 ~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  102 (251)
T 3m19_A           25 SLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN--QLQTLSAGVFDDLTELGTLGLANNQLASLPLGV  102 (251)
T ss_dssp             CCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             CccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC--cCCccCHhHhccCCcCCEEECCCCcccccChhH
Confidence            44455555567899999999999887763  38999999999997  555677777899999999999999999977 45


Q ss_pred             hhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810          276 LDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL  352 (582)
Q Consensus       276 i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L  352 (582)
                      +..+++|++|++++|.++. + ..+..+++|++|++++|.++.+|. .++.+++|++|++++ +.+..+|+..+..+++|
T Consensus       103 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred             hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCC
Confidence            7899999999999999998 4 447899999999999999999887 588999999999999 57888888778999999


Q ss_pred             cEEEcCCCcccc
Q 048810          353 EELYMGNSFKRW  364 (582)
Q Consensus       353 ~~L~l~~~~~~~  364 (582)
                      +.|++++|.+..
T Consensus       182 ~~L~l~~N~~~c  193 (251)
T 3m19_A          182 QTITLFGNQFDC  193 (251)
T ss_dssp             CEEECCSCCBCT
T ss_pred             CEEEeeCCceeC
Confidence            999999997643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=7.8e-16  Score=154.34  Aligned_cols=236  Identities=13%  Similarity=0.072  Sum_probs=171.5

Q ss_pred             cEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCCC-c--cccCCCCCccE-EE
Q 048810          234 GLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKD-I--AKVGQLKKLEV-LS  308 (582)
Q Consensus       234 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~-~--~~~~~l~~L~~-L~  308 (582)
                      ++++.+++  ....+|..+   .++++.|+|++|.++.+|. .+.++++|++|+|++|++.+ +  ..+.++++|+. +.
T Consensus        12 ~~v~C~~~--~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLCQES--KVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TEEEEEST--TCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CEEEecCC--CCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            56777765  566788765   4689999999999999886 58999999999999999866 2  45788988776 55


Q ss_pred             eeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCC-CCccE
Q 048810          309 FRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGL-SKLTT  386 (582)
Q Consensus       309 l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~  386 (582)
                      +.+|+++.+|+ .+..+++|++|++++ +.+..+|+..+....++..|++.++..... +      ....+..+ ..++.
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l------~~~~f~~~~~~l~~  158 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHT-I------ERNSFVGLSFESVI  158 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCE-E------CTTSSTTSBSSCEE
T ss_pred             ccCCcccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhcccccccc-c------cccchhhcchhhhh
Confidence            66789998865 478899999999999 578888875555667788888866432211 0      12234444 46889


Q ss_pred             EEEEecccccCCccc-ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCc
Q 048810          387 LEIHVRYAEILPQDL-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGV  465 (582)
Q Consensus       387 L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~  465 (582)
                      |++++|.++.++..+ ...+|+.+.+..+..                     +..+  |..+...+++|+.|+++++. +
T Consensus       159 L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~---------------------l~~i--~~~~f~~l~~L~~LdLs~N~-l  214 (350)
T 4ay9_X          159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNN---------------------LEEL--PNDVFHGASGPVILDISRTR-I  214 (350)
T ss_dssp             EECCSSCCCEECTTSSTTEEEEEEECTTCTT---------------------CCCC--CTTTTTTEECCSEEECTTSC-C
T ss_pred             hccccccccCCChhhccccchhHHhhccCCc---------------------ccCC--CHHHhccCcccchhhcCCCC-c
Confidence            999999999888775 556676666533222                     1111  33222224899999999986 5


Q ss_pred             ccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccc
Q 048810          466 PSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIG  517 (582)
Q Consensus       466 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~  517 (582)
                      +.++.     +.|.+|+.|.+.++..++.+|      ....|++|+.+++.+
T Consensus       215 ~~lp~-----~~~~~L~~L~~l~~~~l~~lP------~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          215 HSLPS-----YGLENLKKLRARSTYNLKKLP------TLEKLVALMEASLTY  255 (350)
T ss_dssp             CCCCS-----SSCTTCCEEECTTCTTCCCCC------CTTTCCSCCEEECSC
T ss_pred             CccCh-----hhhccchHhhhccCCCcCcCC------CchhCcChhhCcCCC
Confidence            55543     358899999999998888876      467788999998864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.63  E-value=1.5e-15  Score=162.29  Aligned_cols=176  Identities=21%  Similarity=0.275  Sum_probs=149.3

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT  284 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~  284 (582)
                      ......++.|+++++.+..++....+++|+.|++++|  ....+++  +..+++|++|+|++|.+..+| .++.+++|++
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N--~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~  113 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN--KLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS  113 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTS--CCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred             hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCC--CCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence            4456788999999999988887668999999999987  4445554  689999999999999998877 6899999999


Q ss_pred             EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      |+|++|.+..++.+..+++|+.|++++|.+..+ ..+..+++|++|++++| .+..+++  +..+++|+.|++++|.+..
T Consensus       114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCC
Confidence            999999999988899999999999999999988 56899999999999994 6777766  7899999999999987542


Q ss_pred             ccccCCCccchhhccCCCCccEEEEEecccccCCc
Q 048810          365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQ  399 (582)
Q Consensus       365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  399 (582)
                                +..+..+++|+.|++++|.+...|.
T Consensus       190 ----------l~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          190 ----------LRALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             ----------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred             ----------ChHHccCCCCCEEEccCCcCcCCcc
Confidence                      3568889999999999988766544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.63  E-value=3.2e-16  Score=156.38  Aligned_cols=175  Identities=18%  Similarity=0.247  Sum_probs=127.9

Q ss_pred             cCcEEEEecCCCCcCCCC-CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-CChhhhcccCccEEE
Q 048810          209 KDPIAISLPYRGDQVLPQ-RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLDRLINLQTLC  286 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~L~~L~  286 (582)
                      ..++.+++.++.+...+. ...+++|+.|+++++ ..........+..+++|++|++++|.++. .|..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            678888888888755443 347888888888887 22222133455788888888888888764 667788888888888


Q ss_pred             cCCC-CCCC---ccccCCCCCccEEEeeCC-CCCc--cchhhcCCC-CCCEEcccccc-cc--cccCcccccCCCcccEE
Q 048810          287 LDGC-RLKD---IAKVGQLKKLEVLSFRDS-DIEQ--LPLEIGQLR-RLQLLDLSNCW-TL--EVIAPNVISKLSRLEEL  355 (582)
Q Consensus       287 L~~~-~l~~---~~~~~~l~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~l~~~~-~l--~~lp~~~l~~l~~L~~L  355 (582)
                      +++| .++.   +..+..+++|++|++++| .++.  ++..+..++ +|++|++++|. .+  ..+|.. +..+++|++|
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L  227 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHL  227 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEE
Confidence            8888 6764   455778888888888888 8873  677788888 88888888864 33  334443 6778888888


Q ss_pred             EcCCCc-cccccccCCCccchhhccCCCCccEEEEEecc
Q 048810          356 YMGNSF-KRWEKVEGGSNASLVELNGLSKLTTLEIHVRY  393 (582)
Q Consensus       356 ~l~~~~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  393 (582)
                      ++++|. +...        .+..+.++++|+.|++++|.
T Consensus       228 ~l~~~~~l~~~--------~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          228 DLSDSVMLKND--------CFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             ECTTCTTCCGG--------GGGGGGGCTTCCEEECTTCT
T ss_pred             eCCCCCcCCHH--------HHHHHhCCCCCCEeeCCCCC
Confidence            888886 3222        45677788888888888774

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.62  E-value=5.1e-15  Score=138.76  Aligned_cols=151  Identities=21%  Similarity=0.251  Sum_probs=123.7

Q ss_pred             CcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcC
Q 048810          210 DPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLD  288 (582)
Q Consensus       210 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~  288 (582)
                      ..+.++.+++.+..+|.... ++|+.|+++++  ....+++..|..+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus        20 s~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP-TNAQILYLHDN--QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC-TTCSEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcCccCCCCC-CCCCEEEcCCC--ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            34568888888888887554 78999999887  4555656667889999999999999988875 46889999999999


Q ss_pred             CCCCCC-c-cccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          289 GCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       289 ~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      +|+++. + ..+..+++|++|++++|+++.+|..+..+++|++|++++ +.+..+|+..+..+++|+.|++.+|.+..
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            999888 3 447889999999999999999998899999999999998 57888887668888999999998886543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=8.4e-16  Score=147.29  Aligned_cols=172  Identities=19%  Similarity=0.182  Sum_probs=128.6

Q ss_pred             ccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEc
Q 048810          208 RKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCL  287 (582)
Q Consensus       208 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L  287 (582)
                      ..++..+.+.++.+..++....+++|+.|+++++  ....++  .+..+++|++|++++|.++.+|. ++.+++|++|++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n--~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS--NIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTS--CCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCC--Ccccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence            3444555566677766664446777888888776  344555  25778888888888888888877 888888888888


Q ss_pred             CCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810          288 DGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV  367 (582)
Q Consensus       288 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (582)
                      ++|+++..+.+.. .+|++|++++|.++.++ .++.+++|++|++++ +.++.++.  ++.+++|++|++++|.+...  
T Consensus        93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCBC--
T ss_pred             CCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcch--
Confidence            8888888444444 88888888888888876 488888888988888 56777763  78888888888888865322  


Q ss_pred             cCCCccchhhccCCCCccEEEEEecccccCCc
Q 048810          368 EGGSNASLVELNGLSKLTTLEIHVRYAEILPQ  399 (582)
Q Consensus       368 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  399 (582)
                              ..+..+++|+.|++++|.+...|.
T Consensus       166 --------~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          166 --------GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             --------TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             --------HHhccCCCCCEEeCCCCcccCCcc
Confidence                    567778888888888887765543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.61  E-value=1.8e-16  Score=156.14  Aligned_cols=197  Identities=14%  Similarity=0.119  Sum_probs=111.2

Q ss_pred             CCCccEEEcCCCCCCC-CChhh--hcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCCccc-hhhcCCC
Q 048810          256 MEGLKVLQFPGIGSSS-LPSSL--DRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIEQLP-LEIGQLR  325 (582)
Q Consensus       256 l~~Lr~L~l~~~~~~~-lp~~i--~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~  325 (582)
                      +++|++|++++|.+.. .|..+  +.+++|++|++++|.+..  +    ..+..+++|++|++++|.+..+| ..++.++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3457777777776654 44454  666777777777776665  1    23345667777777777666554 3466677


Q ss_pred             CCCEEcccccccccc--cCcc-cccCCCcccEEEcCCCccccccccCCCccchh-hccCCCCccEEEEEecccccC-Ccc
Q 048810          326 RLQLLDLSNCWTLEV--IAPN-VISKLSRLEELYMGNSFKRWEKVEGGSNASLV-ELNGLSKLTTLEIHVRYAEIL-PQD  400 (582)
Q Consensus       326 ~L~~L~l~~~~~l~~--lp~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~  400 (582)
                      +|++|++++|...+.  ++.. .++.+++|++|++++|.+...      ..... .++.+++|++|++++|.+... |..
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l------~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP------TGVCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH------HHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch------HHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence            777777776432221  2211 135666777777776654321      00111 135666777777777766655 433


Q ss_pred             c-c---cccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCC
Q 048810          401 L-V---SVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGE  476 (582)
Q Consensus       401 ~-~---~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~  476 (582)
                      + .   +++|+.|+++.+.. .                    ..   |.++   +++|+.|++++|..... +.    ..
T Consensus       244 ~~~~~~~~~L~~L~Ls~N~l-~--------------------~l---p~~~---~~~L~~L~Ls~N~l~~~-~~----~~  291 (310)
T 4glp_A          244 APRCMWSSALNSLNLSFAGL-E--------------------QV---PKGL---PAKLRVLDLSSNRLNRA-PQ----PD  291 (310)
T ss_dssp             CSSCCCCTTCCCEECCSSCC-C--------------------SC---CSCC---CSCCSCEECCSCCCCSC-CC----TT
T ss_pred             HHhccCcCcCCEEECCCCCC-C--------------------ch---hhhh---cCCCCEEECCCCcCCCC-ch----hh
Confidence            3 2   24666666544433 0                    00   2222   25777777777776543 11    23


Q ss_pred             CCCCCcEEEEeecC
Q 048810          477 GFPRLKHLYVESCS  490 (582)
Q Consensus       477 ~l~~L~~L~l~~~~  490 (582)
                      .+++|++|++++++
T Consensus       292 ~l~~L~~L~L~~N~  305 (310)
T 4glp_A          292 ELPEVDNLTLDGNP  305 (310)
T ss_dssp             SCCCCSCEECSSTT
T ss_pred             hCCCccEEECcCCC
Confidence            67778888877764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.61  E-value=4.1e-16  Score=166.62  Aligned_cols=185  Identities=22%  Similarity=0.233  Sum_probs=154.6

Q ss_pred             EEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCC
Q 048810          213 AISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRL  292 (582)
Q Consensus       213 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l  292 (582)
                      .+.+..+.+..+.....+++|+.|.+.++  ....++.  +..+++|+.|+|++|.+..+|. ++.+++|++|+|++|.+
T Consensus        25 ~l~l~~~~i~~~~~~~~L~~L~~L~l~~n--~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           25 KDNLKKKSVTDAVTQNELNSIDQIIANNS--DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHHTTCSCTTSEECHHHHTTCCCCBCTTC--CCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred             HHhccCCCcccccchhcCCCCCEEECcCC--CCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence            34445555555544457888999999887  4455553  5889999999999999999887 99999999999999999


Q ss_pred             CCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCc
Q 048810          293 KDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSN  372 (582)
Q Consensus       293 ~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  372 (582)
                      ..++.+..+++|++|++++|.+..+| .+..+++|++|++++ +.+..++.  ++.+++|+.|++++|.+...       
T Consensus       100 ~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~~~-------  168 (605)
T 1m9s_A          100 KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISDI-------  168 (605)
T ss_dssp             CCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GGSCTTCSEEECCSSCCCCC-------
T ss_pred             CCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCC-CccCCchh--hcccCCCCEEECcCCcCCCc-------
Confidence            99889999999999999999999876 489999999999999 46777743  89999999999999976543       


Q ss_pred             cchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc
Q 048810          373 ASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA  416 (582)
Q Consensus       373 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  416 (582)
                        .. +..+++|+.|+|++|.+..++....+++|+.|++..+..
T Consensus       169 --~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          169 --VP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             --GG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred             --hh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcC
Confidence              22 889999999999999999886545889999999876554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=2.7e-15  Score=138.59  Aligned_cols=170  Identities=18%  Similarity=0.274  Sum_probs=131.2

Q ss_pred             EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh-hhcccCccEEEcCCC
Q 048810          212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LDRLINLQTLCLDGC  290 (582)
Q Consensus       212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~L~~L~L~~~  290 (582)
                      +.++..++.+..+|... .++++.|+++++  ....++...|..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETN--SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSS--CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCC--ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            46677777777777554 468889999887  45567777778899999999999998887754 588899999999999


Q ss_pred             CCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810          291 RLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV  367 (582)
Q Consensus       291 ~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (582)
                      .++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|.+.    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~----  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWD----  161 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCee----
Confidence            8888 4 4478899999999999988888775 67889999999988 5677787766788899999999887542    


Q ss_pred             cCCCccchhhccCCCCccEEEEEecccc-cCCcc
Q 048810          368 EGGSNASLVELNGLSKLTTLEIHVRYAE-ILPQD  400 (582)
Q Consensus       368 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~  400 (582)
                                 +.+++|+.|+++.|.+. .+|..
T Consensus       162 -----------~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          162 -----------CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             -----------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             -----------cCCCCHHHHHHHHHhCCceeecc
Confidence                       23456777777766554 44443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.60  E-value=2.6e-15  Score=137.34  Aligned_cols=150  Identities=20%  Similarity=0.240  Sum_probs=102.3

Q ss_pred             CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--ccccCCCCCccE
Q 048810          229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEV  306 (582)
Q Consensus       229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~  306 (582)
                      .+++|+.|+++++  ....++ . +..+++|++|++++|.++.++ .+..+++|++|++++|.++.  +..++.+++|++
T Consensus        42 ~l~~L~~L~l~~n--~i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANI--NVTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESS--CCSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCC--CccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            4567777777776  333455 2 467777777777777666554 57777777777777777775  677777777777


Q ss_pred             EEeeCCCCCc-cchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCcc
Q 048810          307 LSFRDSDIEQ-LPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLT  385 (582)
Q Consensus       307 L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~  385 (582)
                      |++++|.++. .|..++.+++|++|++++|..++.+|.  +..+++|++|++++|.+...          ..+..+++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~----------~~l~~l~~L~  184 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY----------RGIEDFPKLN  184 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC----------TTGGGCSSCC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh----------HHhccCCCCC
Confidence            7777777773 566677777777777777554666663  67777777777777754322          2566677777


Q ss_pred             EEEEEecccc
Q 048810          386 TLEIHVRYAE  395 (582)
Q Consensus       386 ~L~l~~~~~~  395 (582)
                      .|++++|.+.
T Consensus       185 ~L~l~~N~i~  194 (197)
T 4ezg_A          185 QLYAFSQTIG  194 (197)
T ss_dssp             EEEECBC---
T ss_pred             EEEeeCcccC
Confidence            7777777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.60  E-value=4.6e-15  Score=135.66  Aligned_cols=151  Identities=17%  Similarity=0.188  Sum_probs=129.8

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-CChhhhcccCcc
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLDRLINLQ  283 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~L~  283 (582)
                      .....+++.++++++.+..++....+++|+.|+++++  ....++  .+..+++|++|++++|.++. .|..++.+++|+
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n--~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI--HATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC--CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCC--CCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            3445789999999999999886568999999999987  333332  35889999999999999986 678899999999


Q ss_pred             EEEcCCCCCCC--ccccCCCCCccEEEeeCCC-CCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810          284 TLCLDGCRLKD--IAKVGQLKKLEVLSFRDSD-IEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS  360 (582)
Q Consensus       284 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (582)
                      +|++++|.++.  +..++.+++|++|++++|. +..+| .+..+++|++|++++ +.+..++.  +..+++|++|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCc
Confidence            99999999997  7889999999999999998 88888 699999999999999 46777773  889999999999998


Q ss_pred             ccc
Q 048810          361 FKR  363 (582)
Q Consensus       361 ~~~  363 (582)
                      .+.
T Consensus       192 ~i~  194 (197)
T 4ezg_A          192 TIG  194 (197)
T ss_dssp             ---
T ss_pred             ccC
Confidence            754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=7e-15  Score=136.87  Aligned_cols=148  Identities=19%  Similarity=0.238  Sum_probs=106.1

Q ss_pred             EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCC
Q 048810          212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGC  290 (582)
Q Consensus       212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~  290 (582)
                      +.++.+++.+..+|.... ++++.|+++++  ....++...|..+++|++|++++|.++.+ |..+..+++|++|+|++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n--~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQN--TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSS--CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCC--cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            457777777777776543 67777887776  45556665667777888888888877764 667777788888888888


Q ss_pred             CCCC-c-cccCCCCCccEEEeeCCCCCccc-hhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccc
Q 048810          291 RLKD-I-AKVGQLKKLEVLSFRDSDIEQLP-LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       291 ~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      .++. + ..+..+++|++|++++|.++.++ ..+..+++|++|++++ +.++.+++..+..+++|++|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            7777 3 33577778888888887777663 4567777788888777 5566666665677777777777777543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.60  E-value=3.6e-15  Score=146.87  Aligned_cols=195  Identities=16%  Similarity=0.088  Sum_probs=150.5

Q ss_pred             hccCcEEEEecCCCCcC-CCCC---CCCCCccEEEeeccCcccccc---ChHHhcCCCCccEEEcCCCCCCCCC-hhhhc
Q 048810          207 IRKDPIAISLPYRGDQV-LPQR---MRCPRLGLFLLHTIGLCSIQV---SDHFFEGMEGLKVLQFPGIGSSSLP-SSLDR  278 (582)
Q Consensus       207 ~~~~~~~l~l~~~~~~~-l~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~  278 (582)
                      ...+++++++++|.+.. .+..   ..+++|++|++++| ......   +...+..+++|++|++++|.+..+| ..++.
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            44669999999999854 4443   56899999999998 222222   2233457999999999999998865 67889


Q ss_pred             ccCccEEEcCCCCCCC----c--cccCCCCCccEEEeeCCCCCccchh----hcCCCCCCEEccccccccccc-Cccccc
Q 048810          279 LINLQTLCLDGCRLKD----I--AKVGQLKKLEVLSFRDSDIEQLPLE----IGQLRRLQLLDLSNCWTLEVI-APNVIS  347 (582)
Q Consensus       279 L~~L~~L~L~~~~l~~----~--~~~~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~l~~l-p~~~l~  347 (582)
                      +++|++|++++|++..    +  ..++.+++|++|++++|+++.+|..    ++.+++|++|++++| .++.. |.. ++
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~-~~  245 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPS-AP  245 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSC-CS
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhh-HH
Confidence            9999999999998764    1  3347899999999999999877763    578899999999994 56665 654 56


Q ss_pred             CC---CcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEecc
Q 048810          348 KL---SRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGE  415 (582)
Q Consensus       348 ~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  415 (582)
                      .+   ++|++|++++|.+...         +..+.  ++|+.|++++|.+..+|....+++|+.|+++.+.
T Consensus       246 ~~~~~~~L~~L~Ls~N~l~~l---------p~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          246 RCMWSSALNSLNLSFAGLEQV---------PKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             SCCCCTTCCCEECCSSCCCSC---------CSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred             hccCcCcCCEEECCCCCCCch---------hhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence            65   6999999999986532         33333  7999999999999988765578889988876554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.59  E-value=1e-14  Score=135.73  Aligned_cols=148  Identities=15%  Similarity=0.204  Sum_probs=104.0

Q ss_pred             EEEEecCCCCcCCCCCCCCCCccEEEeeccCcccccc-ChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCC
Q 048810          212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQV-SDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDG  289 (582)
Q Consensus       212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~  289 (582)
                      +.++++++.+..+|..+ .+.++.|+++++  ....+ +...|..+++|++|++++|.++.++. .++.+++|++|++++
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N--~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNN--EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSS--CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCC--cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            47888888887777644 345677777776  33333 34456777788888888887777554 677777888888888


Q ss_pred             CCCCC--ccccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccc
Q 048810          290 CRLKD--IAKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       290 ~~l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      |.++.  +..+..+++|++|++++|.++.+ |..+..+++|++|++++ +.++.+++..+..+++|+.|++++|.+.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            87777  34477777888888887777766 45577777788888777 4566665555777777777777777643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.58  E-value=1.9e-14  Score=152.02  Aligned_cols=177  Identities=16%  Similarity=0.151  Sum_probs=145.9

Q ss_pred             ccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEc
Q 048810          208 RKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCL  287 (582)
Q Consensus       208 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L  287 (582)
                      ..+++.|++++|.+..+|... .++|+.|++++|  ....+|    ..+++|++|++++|.++.+|. ++.  +|++|++
T Consensus        58 ~~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N--~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           58 INQFSELQLNRLNLSSLPDNL-PPQITVLEITQN--ALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV  127 (571)
T ss_dssp             HTTCSEEECCSSCCSCCCSCC-CTTCSEEECCSS--CCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred             cCCccEEEeCCCCCCccCHhH-cCCCCEEECcCC--CCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence            458999999999998888866 488999999998  445677    357899999999999999998 666  9999999


Q ss_pred             CCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810          288 DGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV  367 (582)
Q Consensus       288 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (582)
                      ++|.++.++.  .+++|++|++++|.++.+|.   .+++|++|++++ +.++.+|.  ++  ++|+.|++++|.+...  
T Consensus       128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~~l--  195 (571)
T 3cvr_A          128 DNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLESL--  195 (571)
T ss_dssp             CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCSSC--
T ss_pred             CCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCCch--
Confidence            9999998333  78999999999999999987   678999999999 56788887  55  8999999999976532  


Q ss_pred             cCCCccchhhccCCCCc-------cEEEEEecccccCCccc-ccccccEEEEEeccc
Q 048810          368 EGGSNASLVELNGLSKL-------TTLEIHVRYAEILPQDL-VSVELQRYKMFIGEA  416 (582)
Q Consensus       368 ~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~  416 (582)
                             +. +..  +|       +.|++++|.+..+|..+ .+++|+.|+++.+..
T Consensus       196 -------p~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          196 -------PA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             -------CC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             -------hh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence                   22 332  55       99999999999999876 788999998876654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.57  E-value=8.9e-16  Score=156.28  Aligned_cols=278  Identities=17%  Similarity=0.131  Sum_probs=148.4

Q ss_pred             cEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCC----ccchhh-------c
Q 048810          260 KVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIE----QLPLEI-------G  322 (582)
Q Consensus       260 r~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~----~lp~~i-------~  322 (582)
                      ++..++...+..++..+..+++|++|++++|.+..  +    ..+..+++|++|++++|.+.    .+|..+       .
T Consensus        12 ~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~   91 (386)
T 2ca6_A           12 KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL   91 (386)
T ss_dssp             EESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT
T ss_pred             ccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHh
Confidence            33333333344455666666666666666666654  2    22556666667766665443    234433       5


Q ss_pred             CCCCCCEEcccccccccc-----cCcccccCCCcccEEEcCCCccccccccCCCccchhhccCC---------CCccEEE
Q 048810          323 QLRRLQLLDLSNCWTLEV-----IAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGL---------SKLTTLE  388 (582)
Q Consensus       323 ~l~~L~~L~l~~~~~l~~-----lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~~L~  388 (582)
                      .+++|++|++++| .++.     +|.. +..+++|++|++++|.+....    .......+..+         ++|++|+
T Consensus        92 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~----~~~l~~~l~~l~~~~~~~~~~~L~~L~  165 (386)
T 2ca6_A           92 KCPKLHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQA----GAKIARALQELAVNKKAKNAPPLRSII  165 (386)
T ss_dssp             TCTTCCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHH----HHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             hCCcccEEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHH----HHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence            6677777777764 3333     4433 566777777777776653220    00012223333         7888888


Q ss_pred             EEecccc--cCCc---cc-ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccc
Q 048810          389 IHVRYAE--ILPQ---DL-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETL  462 (582)
Q Consensus       389 l~~~~~~--~~~~---~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~  462 (582)
                      +++|.+.  .++.   .+ .+++|+.|++..+..                ...+.....  +.++.. +++|+.|+|++|
T Consensus       166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l----------------~~~g~~~l~--~~~l~~-~~~L~~L~Ls~n  226 (386)
T 2ca6_A          166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI----------------RPEGIEHLL--LEGLAY-CQELKVLDLQDN  226 (386)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC----------------CHHHHHHHH--HTTGGG-CTTCCEEECCSS
T ss_pred             CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCC----------------CHhHHHHHH--HHHhhc-CCCccEEECcCC
Confidence            8888765  2331   22 556777777654443                000000000  112333 378888888887


Q ss_pred             cCc----ccccccccCCCCCCCCcEEEEeecCCceeeeccccccc--CCCCcccccccccccccccc-----cccccccC
Q 048810          463 EGV----PSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVG--CEVFPLLETLYLIGLANLET-----ICCSQLRE  531 (582)
Q Consensus       463 ~~~----~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~L~~-----~~~~~~~~  531 (582)
                      ...    ..++..+   ..+++|++|+|++|. +...........  .+.+++|+.|+++++ .+..     ++...   
T Consensus       227 ~l~~~g~~~l~~~l---~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l---  298 (386)
T 2ca6_A          227 TFTHLGSSALAIAL---KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVI---  298 (386)
T ss_dssp             CCHHHHHHHHHHHG---GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHH---
T ss_pred             CCCcHHHHHHHHHH---ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHH---
Confidence            742    3344433   378888888888874 222100000001  134788888888874 4444     33220   


Q ss_pred             cccCCCccEEEEecccCcccccC--hhHHhhhhhcceeeecc
Q 048810          532 DQSFSNLRIIEVEHCNKLKHLFS--FSMAKNLLWLQKVGVEE  571 (582)
Q Consensus       532 ~~~~~~L~~L~l~~c~~L~~l~~--~~~~~~l~~L~~L~i~~  571 (582)
                      ...+++|+.|++++|+ ++...+  ......+++++.+++..
T Consensus       299 ~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          299 DEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             HHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             HhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhhh
Confidence            1357888888888874 444431  23344566666555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.56  E-value=9.7e-16  Score=156.00  Aligned_cols=187  Identities=14%  Similarity=0.095  Sum_probs=122.0

Q ss_pred             HhhccCcEEEEecCCCCcCC-----CCCC-CCCCccEEEeeccC--ccccccChHH------hcCCCCccEEEcCCCCCC
Q 048810          205 ETIRKDPIAISLPYRGDQVL-----PQRM-RCPRLGLFLLHTIG--LCSIQVSDHF------FEGMEGLKVLQFPGIGSS  270 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l-----~~~~-~~~~L~~L~l~~~~--~~~~~~~~~~------~~~l~~Lr~L~l~~~~~~  270 (582)
                      .....+++.|++++|.+...     +..+ .+++|+.|+++++.  .....+|..+      +..+++|++|++++|.++
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            33456788888888877432     2222 57788888887751  1112233332      367788888888888876


Q ss_pred             C-----CChhhhcccCccEEEcCCCCCCC--ccc----cCCC---------CCccEEEeeCCCCC--ccc---hhhcCCC
Q 048810          271 S-----LPSSLDRLINLQTLCLDGCRLKD--IAK----VGQL---------KKLEVLSFRDSDIE--QLP---LEIGQLR  325 (582)
Q Consensus       271 ~-----lp~~i~~L~~L~~L~L~~~~l~~--~~~----~~~l---------~~L~~L~l~~~~l~--~lp---~~i~~l~  325 (582)
                      .     +|..+..+++|++|++++|.+..  +..    +..+         ++|++|++++|.+.  .+|   ..+..++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            6     67777888888888888888764  222    3333         78888888888776  444   4566778


Q ss_pred             CCCEEcccccccccc-----cCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccccc
Q 048810          326 RLQLLDLSNCWTLEV-----IAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEI  396 (582)
Q Consensus       326 ~L~~L~l~~~~~l~~-----lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  396 (582)
                      +|++|++++| .++.     +.+..+..+++|++|++++|.+...    .....+..+..+++|+.|++++|.+..
T Consensus       188 ~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~----g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          188 LLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----GSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             TCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH----HHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             CcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH----HHHHHHHHHccCCCcCEEECCCCCCch
Confidence            8888888885 4441     2221267788888888888775311    001135567777888888888776654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.55  E-value=2.6e-15  Score=151.25  Aligned_cols=241  Identities=11%  Similarity=0.064  Sum_probs=111.4

Q ss_pred             HhcCCCCccEEEcCCCCCCCCC-----hhhhccc-CccEEEcCCCCCCC--ccccCCC-----CCccEEEeeCCCCCccc
Q 048810          252 FFEGMEGLKVLQFPGIGSSSLP-----SSLDRLI-NLQTLCLDGCRLKD--IAKVGQL-----KKLEVLSFRDSDIEQLP  318 (582)
Q Consensus       252 ~~~~l~~Lr~L~l~~~~~~~lp-----~~i~~L~-~L~~L~L~~~~l~~--~~~~~~l-----~~L~~L~l~~~~l~~lp  318 (582)
                      ++...++|++|++++|.++..+     ..+..++ +|++|++++|.+..  +..+..+     ++|++|++++|.++..+
T Consensus        17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~   96 (362)
T 3goz_A           17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS   96 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence            3344444666666666655543     3445555 56666666665554  3333332     55666666666555332


Q ss_pred             hh-----hcCC-CCCCEEcccccccccccCcccc----cC-CCcccEEEcCCCccccccccCCCccchhhccCCC-CccE
Q 048810          319 LE-----IGQL-RRLQLLDLSNCWTLEVIAPNVI----SK-LSRLEELYMGNSFKRWEKVEGGSNASLVELNGLS-KLTT  386 (582)
Q Consensus       319 ~~-----i~~l-~~L~~L~l~~~~~l~~lp~~~l----~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~  386 (582)
                      ..     +..+ ++|++|++++| .++..+...+    .. .++|++|++++|.+...    ........+..++ +|+.
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----~~~~l~~~l~~~~~~L~~  171 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK----SSDELIQILAAIPANVNS  171 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS----CHHHHHHHHHTSCTTCCE
T ss_pred             HHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH----HHHHHHHHHhcCCccccE
Confidence            21     3333 55666666653 3444433222    22 24566666666544321    0011222333443 5666


Q ss_pred             EEEEecccccCCcc-c-----cc-ccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceee
Q 048810          387 LEIHVRYAEILPQD-L-----VS-VELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWL  459 (582)
Q Consensus       387 L~l~~~~~~~~~~~-~-----~~-~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L  459 (582)
                      |++++|.+...... +     .. ++|+.|+++.+.. .               ..+....   +..+....++|++|++
T Consensus       172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i-~---------------~~~~~~l---~~~l~~~~~~L~~L~L  232 (362)
T 3goz_A          172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-G---------------LKSYAEL---AYIFSSIPNHVVSLNL  232 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-G---------------GSCHHHH---HHHHHHSCTTCCEEEC
T ss_pred             eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC-C---------------hhHHHHH---HHHHhcCCCCceEEEC
Confidence            66666655443321 1     22 3555555543332 0               0000001   2333333357788888


Q ss_pred             ccccCcccccccc-cCCCCCCCCcEEEEeecCCceeeecccc---cccCCCCcccccccccc
Q 048810          460 ETLEGVPSVVHEL-DDGEGFPRLKHLYVESCSEILHIVGSVR---RVGCEVFPLLETLYLIG  517 (582)
Q Consensus       460 ~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~~~~~~~L~~L~l~~  517 (582)
                      ++|.........+ ...+.+++|++|++++|. +..+.....   ......+++|+.|++++
T Consensus       233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~  293 (362)
T 3goz_A          233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNG  293 (362)
T ss_dssp             CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCC
Confidence            7776433222111 013467788888888774 111111000   01234556677777766

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.54  E-value=1.4e-14  Score=145.84  Aligned_cols=171  Identities=19%  Similarity=0.160  Sum_probs=105.3

Q ss_pred             EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhc-CCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCC
Q 048810          212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFE-GMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDG  289 (582)
Q Consensus       212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~  289 (582)
                      +.++.+++.+..+|..+ .+.++.|++++|  ....++...|. .+++|++|++++|.++.++ ..+..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N--~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHN--NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSS--CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCC--CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            45677777776666543 234667777765  44555555555 6777777777777776655 3566777777777777


Q ss_pred             CCCCC--ccccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccccCcccc---cCCCcccEEEcCCCccc
Q 048810          290 CRLKD--IAKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVI---SKLSRLEELYMGNSFKR  363 (582)
Q Consensus       290 ~~l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~l---~~l~~L~~L~l~~~~~~  363 (582)
                      |+++.  +..+..+.+|++|++++|.+..+ |..+..+++|++|++++ +.+..+|...+   ..+++|+.|++++|.+.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            77666  23466777777777777777655 34566677777777776 45666666544   45667777777666554


Q ss_pred             cccccCCCccchhhccCCCC--ccEEEEEeccc
Q 048810          364 WEKVEGGSNASLVELNGLSK--LTTLEIHVRYA  394 (582)
Q Consensus       364 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~  394 (582)
                      ..        ....+..++.  |+.|++.+|.+
T Consensus       177 ~l--------~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          177 KL--------PLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CC--------CHHHHHHSCHHHHTTEECCSSCE
T ss_pred             cc--------CHHHhhhccHhhcceEEecCCCc
Confidence            33        2234444444  35566665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=2.8e-14  Score=126.83  Aligned_cols=140  Identities=22%  Similarity=0.211  Sum_probs=115.7

Q ss_pred             CCCCccEEEcCCCCCC--CCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCc-cchhhcCCCCCCEEc
Q 048810          255 GMEGLKVLQFPGIGSS--SLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQ-LPLEIGQLRRLQLLD  331 (582)
Q Consensus       255 ~l~~Lr~L~l~~~~~~--~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~  331 (582)
                      ..++|++|++++|.++  .+|..+..+++|++|++++|.++....+..+++|++|++++|.+.. +|..++.+++|++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            4578999999999998  7898889999999999999998888888999999999999999997 777777899999999


Q ss_pred             ccccccccccCc-ccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcc
Q 048810          332 LSNCWTLEVIAP-NVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD  400 (582)
Q Consensus       332 l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  400 (582)
                      +++| .++.+|. ..++.+++|++|++++|.+...     .......+..+++|+.|++++|....+|..
T Consensus       102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~-----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNL-----NDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTS-----TTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcch-----HHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            9994 6777763 3488999999999999876543     000113678899999999999988877654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.54  E-value=3.2e-14  Score=132.38  Aligned_cols=148  Identities=12%  Similarity=0.112  Sum_probs=106.1

Q ss_pred             cEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC--hhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEe
Q 048810          234 GLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP--SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSF  309 (582)
Q Consensus       234 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l  309 (582)
                      ++++++++  ....+|..+   ...+++|++++|.++.++  ..++.+++|++|++++|.++.  +..+..+++|++|++
T Consensus        14 ~~l~~s~n--~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQ--KLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSS--CCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEeEeCCC--CcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            46777665  445566544   345678888888887763  247788888888888888877  346788888888888


Q ss_pred             eCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810          310 RDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE  388 (582)
Q Consensus       310 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  388 (582)
                      ++|.++.+|.. +..+++|++|++++ +.+..+++..+..+++|++|++++|.+...        .+..+..+++|+.|+
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTV--------APGAFDTLHSLSTLN  159 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCB--------CTTTTTTCTTCCEEE
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCEE--------CHHHhcCCCCCCEEE
Confidence            88888877654 77788888888888 456666555577888888888888766544        345677777888888


Q ss_pred             EEecccc
Q 048810          389 IHVRYAE  395 (582)
Q Consensus       389 l~~~~~~  395 (582)
                      +++|.+.
T Consensus       160 L~~N~l~  166 (220)
T 2v70_A          160 LLANPFN  166 (220)
T ss_dssp             CCSCCEE
T ss_pred             ecCcCCc
Confidence            7776543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.54  E-value=8.4e-15  Score=147.43  Aligned_cols=162  Identities=20%  Similarity=0.240  Sum_probs=138.8

Q ss_pred             hhHHHHHhhccCcEEEEecCCCCcCCCCCC---CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-
Q 048810          199 LEKKMEETIRKDPIAISLPYRGDQVLPQRM---RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-  274 (582)
Q Consensus       199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-  274 (582)
                      .+..+|...+..++.|++++|.+..++...   .+++|+.|++++|  ....++...|..+++|++|+|++|.++.+|. 
T Consensus        29 ~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N--~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~  106 (361)
T 2xot_A           29 QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN--HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF  106 (361)
T ss_dssp             CCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC--cCCccChhhccCCCCCCEEECCCCcCCcCCHH
Confidence            445555556678999999999998887643   7899999999987  6667777778999999999999999998765 


Q ss_pred             hhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchhh----cCCCCCCEEcccccccccccCcccccC
Q 048810          275 SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLEI----GQLRRLQLLDLSNCWTLEVIAPNVISK  348 (582)
Q Consensus       275 ~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~l~~~~~l~~lp~~~l~~  348 (582)
                      .+..+.+|++|+|++|+++.  +..+..+++|++|++++|.++.+|..+    ..+++|++|++++ +.+..+|...+..
T Consensus       107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~  185 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQK  185 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHH
T ss_pred             HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhh
Confidence            68999999999999999998  578999999999999999999999876    6799999999999 6788998776788


Q ss_pred             CCc--ccEEEcCCCccc
Q 048810          349 LSR--LEELYMGNSFKR  363 (582)
Q Consensus       349 l~~--L~~L~l~~~~~~  363 (582)
                      +++  |+.|++.+|.+.
T Consensus       186 l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          186 LPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SCHHHHTTEECCSSCEE
T ss_pred             ccHhhcceEEecCCCcc
Confidence            887  489999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.54  E-value=1.3e-14  Score=133.84  Aligned_cols=154  Identities=18%  Similarity=0.182  Sum_probs=129.7

Q ss_pred             HHHHhhccCcEEEEecCCCCcCCCCCC--CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh-hhc
Q 048810          202 KMEETIRKDPIAISLPYRGDQVLPQRM--RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LDR  278 (582)
Q Consensus       202 ~~~~~~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~  278 (582)
                      ..|...+.+++++++++|.+..++...  .+++|+.|++.++  ....++...|..+++|++|++++|.++.+|.. ++.
T Consensus        21 ~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   98 (208)
T 2o6s_A           21 SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN--KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK   98 (208)
T ss_dssp             SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC--ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence            344445678999999999998887743  8999999999997  55678888889999999999999999998754 689


Q ss_pred             ccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEE
Q 048810          279 LINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEEL  355 (582)
Q Consensus       279 L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L  355 (582)
                      +++|++|++++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|..        .+.+++|+.|
T Consensus        99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L  170 (208)
T 2o6s_A           99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYL  170 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHH
T ss_pred             ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHH
Confidence            9999999999999998 4 4479999999999999999988876 78899999999999621        3567788888


Q ss_pred             EcCCCccccc
Q 048810          356 YMGNSFKRWE  365 (582)
Q Consensus       356 ~l~~~~~~~~  365 (582)
                      ++..+.+...
T Consensus       171 ~~~~n~~~g~  180 (208)
T 2o6s_A          171 SEWINKHSGV  180 (208)
T ss_dssp             HHHHHHCTTT
T ss_pred             HHHHHhCCce
Confidence            8877765544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.53  E-value=4.3e-14  Score=131.51  Aligned_cols=146  Identities=14%  Similarity=0.178  Sum_probs=82.0

Q ss_pred             cEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEee
Q 048810          234 GLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFR  310 (582)
Q Consensus       234 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~  310 (582)
                      +.+++.++  ....+|..+   .+.|+.|++++|.++.+|. .+..+++|++|++++|.++.  +..+..+++|++|+++
T Consensus        14 ~~v~c~~~--~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGK--GLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTS--CCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCC--CcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            34444443  334444433   2456666666666665443 45666666666666666655  4556666666666666


Q ss_pred             CCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEE
Q 048810          311 DSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEI  389 (582)
Q Consensus       311 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  389 (582)
                      +|.++.+|.. +..+++|++|++++ +.+..+++..+..+++|++|++++|.+...        ....+..+++|+.|++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTI--------AKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC--------CTTTTTTCTTCCEEEC
T ss_pred             CCcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEE--------CHHHHhCCCCCCEEEe
Confidence            6666666554 35566666666666 345555444456666666666666654333        2233455556666665


Q ss_pred             Eecc
Q 048810          390 HVRY  393 (582)
Q Consensus       390 ~~~~  393 (582)
                      ++|.
T Consensus       160 ~~N~  163 (220)
T 2v9t_B          160 AQNP  163 (220)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            5554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.52  E-value=6.4e-14  Score=134.15  Aligned_cols=150  Identities=19%  Similarity=0.177  Sum_probs=130.9

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT  284 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~  284 (582)
                      .....+++.+++++|.+..++....+++|+.|++++|  ....++.  +..+++|++|++++|.++.+|....  .+|++
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N--~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~  110 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN--QISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR  110 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCC--ccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence            4456789999999999999986568999999999987  5556665  6899999999999999999886443  89999


Q ss_pred             EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      |++++|+++.++.+..+++|++|++++|+++.+| .++.+++|++|++++ +.+..++.  +..+++|+.|++++|.+..
T Consensus       111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~~--l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTGG--LTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBCTT--STTCCCCCEEEEEEEEEEC
T ss_pred             EEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcchHH--hccCCCCCEEeCCCCcccC
Confidence            9999999999778999999999999999999987 689999999999999 56777733  8899999999999987543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.50  E-value=1e-13  Score=129.78  Aligned_cols=148  Identities=20%  Similarity=0.202  Sum_probs=97.9

Q ss_pred             ccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEe
Q 048810          233 LGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSF  309 (582)
Q Consensus       233 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l  309 (582)
                      .++++++++  ....+|..+   .++|++|++++|.++.+ |..+..+++|++|++++|+++. + ..+..+++|++|++
T Consensus        21 ~~~v~c~~~--~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           21 GTTVDCRSK--RHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TTEEECTTS--CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEeEccCC--CcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            455666554  455566543   36777777777777765 4567777777777777777766 3 34577777777777


Q ss_pred             eCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810          310 RDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE  388 (582)
Q Consensus       310 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  388 (582)
                      ++|.++.+|.. +..+++|++|++++ +.+..+|.. +..+++|++|++++|.+...        ....+..+++|+.|+
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKSI--------PHGAFDRLSSLTHAY  165 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCCC--------CTTTTTTCTTCCEEE
T ss_pred             CCCcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCcc--------CHHHHhCCCCCCEEE
Confidence            77777776655 46677777777777 456677665 56777777777777765433        223456667777777


Q ss_pred             EEecccc
Q 048810          389 IHVRYAE  395 (582)
Q Consensus       389 l~~~~~~  395 (582)
                      +.+|.+.
T Consensus       166 l~~N~~~  172 (229)
T 3e6j_A          166 LFGNPWD  172 (229)
T ss_dssp             CTTSCBC
T ss_pred             eeCCCcc
Confidence            7666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.48  E-value=4.7e-15  Score=149.40  Aligned_cols=64  Identities=19%  Similarity=0.256  Sum_probs=29.9

Q ss_pred             hcCCC-CccEEEcCCCCCCCC-Chhhhcc-----cCccEEEcCCCCCCC--ccc----cCCC-CCccEEEeeCCCCCc
Q 048810          253 FEGME-GLKVLQFPGIGSSSL-PSSLDRL-----INLQTLCLDGCRLKD--IAK----VGQL-KKLEVLSFRDSDIEQ  316 (582)
Q Consensus       253 ~~~l~-~Lr~L~l~~~~~~~l-p~~i~~L-----~~L~~L~L~~~~l~~--~~~----~~~l-~~L~~L~l~~~~l~~  316 (582)
                      |..++ +|++|++++|.++.. +..+..+     ++|++|++++|.++.  +..    +..+ ++|++|++++|.++.
T Consensus        46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            34444 555555555555442 3334333     555555555555443  221    2233 455555555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=1.3e-13  Score=145.65  Aligned_cols=164  Identities=17%  Similarity=0.137  Sum_probs=135.4

Q ss_pred             HHHhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCc
Q 048810          203 MEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINL  282 (582)
Q Consensus       203 ~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L  282 (582)
                      +|.....+++.|++++|.+..+|  ..+++|+.|++++|  ....+|. + ..  +|++|++++|.++.+|.   .+++|
T Consensus        74 lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N--~l~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L  142 (571)
T 3cvr_A           74 LPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDN--RLSTLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALL  142 (571)
T ss_dssp             CCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSS--CCSCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTC
T ss_pred             cCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCC--CCCCcch-h-hc--CCCEEECCCCcCCCCCC---cCccc
Confidence            33333468999999999999998  45799999999998  4455776 3 43  99999999999999997   68999


Q ss_pred             cEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcc-------cEE
Q 048810          283 QTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL-------EEL  355 (582)
Q Consensus       283 ~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L-------~~L  355 (582)
                      ++|++++|.++.++.  .+++|++|++++|.++.+|. +.  ++|++|++++ +.++.+|.  +..  +|       +.|
T Consensus       143 ~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~~~~L~~L  212 (571)
T 3cvr_A          143 EYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV--RNHHSEETEIFF  212 (571)
T ss_dssp             CEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC----------CCEEE
T ss_pred             cEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH--hhhcccccceEE
Confidence            999999999998333  68899999999999999998 65  8999999999 57888887  444  67       999


Q ss_pred             EcCCCccccccccCCCccchhhccCCCCccEEEEEeccccc
Q 048810          356 YMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEI  396 (582)
Q Consensus       356 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  396 (582)
                      ++++|.+..         .+..+..+++|+.|++++|.+..
T Consensus       213 ~Ls~N~l~~---------lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          213 RCRENRITH---------IPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             ECCSSCCCC---------CCGGGGGSCTTEEEECCSSSCCH
T ss_pred             ecCCCccee---------cCHHHhcCCCCCEEEeeCCcCCC
Confidence            999997653         36678889999999999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.47  E-value=2.1e-16  Score=167.79  Aligned_cols=119  Identities=20%  Similarity=0.243  Sum_probs=94.0

Q ss_pred             CccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810          281 NLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS  360 (582)
Q Consensus       281 ~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (582)
                      .|++|++++|.++.++.++.+++|++|++++|.++.+|..++.+++|++|++++ +.++.+| . ++.+++|++|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~-l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-G-VANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-G-GTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-c-cCCCCCCcEEECCCC
Confidence            577888888888884448888888888888888888888888888888888888 5677777 3 788888888888888


Q ss_pred             ccccccccCCCccc-hhhccCCCCccEEEEEecccccCCccc-----ccccccEEE
Q 048810          361 FKRWEKVEGGSNAS-LVELNGLSKLTTLEIHVRYAEILPQDL-----VSVELQRYK  410 (582)
Q Consensus       361 ~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~  410 (582)
                      .+...        . +..++.+++|+.|++++|.+...|...     .+++|+.|+
T Consensus       519 ~l~~~--------~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          519 RLQQS--------AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCCSS--------STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCC--------CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            76443        2 667888888888888888888776654     367777664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=3e-13  Score=120.13  Aligned_cols=133  Identities=20%  Similarity=0.166  Sum_probs=84.4

Q ss_pred             hhccCcEEEEecCCCCc--CCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-CChhhhcccC
Q 048810          206 TIRKDPIAISLPYRGDQ--VLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLDRLIN  281 (582)
Q Consensus       206 ~~~~~~~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~  281 (582)
                      ..+.+++.+++++|.+.  .+|... .+++|+.|++++|  ....+  ..|..+++|++|++++|.++. +|..+..+++
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n--~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV--GLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS--CCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC--CCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            34567788888887776  666553 6667777777666  23333  334666677777777777666 5555556677


Q ss_pred             ccEEEcCCCCCCC-c--cccCCCCCccEEEeeCCCCCccch----hhcCCCCCCEEcccccccccccCc
Q 048810          282 LQTLCLDGCRLKD-I--AKVGQLKKLEVLSFRDSDIEQLPL----EIGQLRRLQLLDLSNCWTLEVIAP  343 (582)
Q Consensus       282 L~~L~L~~~~l~~-~--~~~~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~~~~l~~lp~  343 (582)
                      |++|++++|.++. +  ..+..+++|++|++++|.++.+|.    .+..+++|++|++++| ....+|.
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~  164 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD  164 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred             CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence            7777777776666 3  556666677777777766666655    5666666777766663 3444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.44  E-value=1.4e-13  Score=119.55  Aligned_cols=128  Identities=23%  Similarity=0.208  Sum_probs=87.0

Q ss_pred             CCCccEEEcCCCCCC--CCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCc-cchhhcCCCCCCEEcc
Q 048810          256 MEGLKVLQFPGIGSS--SLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQ-LPLEIGQLRRLQLLDL  332 (582)
Q Consensus       256 l~~Lr~L~l~~~~~~--~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l  332 (582)
                      .++|+.|++++|.++  .+|..++.+++|++|++++|.++....++.+++|++|++++|.++. +|..++.+++|++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            466777888887776  5777777777888888887777776667777788888888877776 6666667777888888


Q ss_pred             cccccccccCc-ccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEE
Q 048810          333 SNCWTLEVIAP-NVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEI  389 (582)
Q Consensus       333 ~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  389 (582)
                      ++ +.++.+|. ..++.+++|++|++++|.+...     .......+..+++|+.|++
T Consensus        96 s~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~-----~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           96 SG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNL-----NDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGGS-----TTHHHHHHHHCTTCCEETT
T ss_pred             CC-CcCCChHHHHHHhhCCCCCEEeCcCCcccch-----HHHHHHHHHHCCCcccccC
Confidence            77 34665531 2367777777777777765433     0000134666677776654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.43  E-value=2.5e-13  Score=148.76  Aligned_cols=155  Identities=15%  Similarity=0.168  Sum_probs=100.8

Q ss_pred             ccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccC--ccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810          208 RKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIG--LCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT  284 (582)
Q Consensus       208 ~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~--~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~  284 (582)
                      ...++++++..+.+...+... ....|+.+.+....  .....++...|..+..|++|+|++|.+..+|..+..+++|++
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~  251 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR  251 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence            456788888888886655433 44444444443321  122235666778999999999999999999999999999999


Q ss_pred             EEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccc
Q 048810          285 LCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       285 L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      |+|++|.++. |..++++++|++|+|++|.++.+|..++.+++|++|++++ +.++.+|.. |+.+++|++|++++|.+.
T Consensus       252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred             EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCCccC
Confidence            9999999998 7889999999999999999999999999999999999999 578899987 899999999999999765


Q ss_pred             c
Q 048810          364 W  364 (582)
Q Consensus       364 ~  364 (582)
                      .
T Consensus       330 ~  330 (727)
T 4b8c_D          330 K  330 (727)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=2.9e-13  Score=121.14  Aligned_cols=135  Identities=13%  Similarity=0.169  Sum_probs=97.6

Q ss_pred             cCCCCccEEEcCCCCCCCCChhhhccc-CccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhh-cCCCCCCEEc
Q 048810          254 EGMEGLKVLQFPGIGSSSLPSSLDRLI-NLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLD  331 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~-~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~  331 (582)
                      ..+.+|++|++++|.++.+|. +..+. +|++|++++|.++.+..++.+++|++|++++|.++.+|..+ +.+++|++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            567788888888888887764 55554 88888888888877777888888888888888888887665 7788888888


Q ss_pred             ccccccccccCc-ccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810          332 LSNCWTLEVIAP-NVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE  395 (582)
Q Consensus       332 l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  395 (582)
                      +++ +.++.+|. ..++.+++|++|++++|.+...     .......+..+++|+.|+++.|...
T Consensus        95 L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-----~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           95 LTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNK-----KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-----TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCCc-----HhHHHHHHHHCCccceeCCCcCCHH
Confidence            888 45677765 2367788888888888765432     0001113667778888887776543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.42  E-value=1e-12  Score=119.33  Aligned_cols=106  Identities=20%  Similarity=0.291  Sum_probs=84.9

Q ss_pred             CCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEccc
Q 048810          257 EGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLS  333 (582)
Q Consensus       257 ~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~  333 (582)
                      ++|++|++++|.++.+|..+..+++|++|++++|.++.  +..+..+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            47788888888888888888888888888888888887  3568888888888888888887765 47788888888888


Q ss_pred             ccccccccCcccccCCCcccEEEcCCCccc
Q 048810          334 NCWTLEVIAPNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       334 ~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      + +.+..+|+..+..+++|+.|++++|.+.
T Consensus       111 ~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          111 G-NDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             S-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             C-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence            8 5677777766778888888888887653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.41  E-value=7.2e-13  Score=120.38  Aligned_cols=124  Identities=18%  Similarity=0.246  Sum_probs=64.6

Q ss_pred             cEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-cc--ccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEccccc
Q 048810          260 KVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IA--KVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNC  335 (582)
Q Consensus       260 r~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~  335 (582)
                      ++++++++.++.+|..+..  +|++|++++|.++. ++  .++.+++|++|++++|.++.+ |..++.+++|++|++++ 
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-
Confidence            4555555555555554433  55555555555555 22  255555555555555555544 34455555555555555 


Q ss_pred             ccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccc
Q 048810          336 WTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYA  394 (582)
Q Consensus       336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  394 (582)
                      +.+..+++..++.+++|++|++++|.+...        .+..+..+++|+.|++++|.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCV--------MPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEE--------CTTSSTTCTTCCEEECTTCCB
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCee--------CHHHhhcCCCCCEEEeCCCCc
Confidence            344454444455555555555555544333        233445555555555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.40  E-value=6.6e-13  Score=115.31  Aligned_cols=102  Identities=26%  Similarity=0.369  Sum_probs=48.4

Q ss_pred             cCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccc--hhhcCCCCCCE
Q 048810          254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLP--LEIGQLRRLQL  329 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~  329 (582)
                      ..+++|++|++++|.++.+ ..++.+++|++|++++|.++.  |..++.+++|++|++++|.++.+|  ..++.+++|++
T Consensus        39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~  117 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS  117 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred             hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence            3444555555555544444 344445555555555555444  223333555555555555554433  44455555555


Q ss_pred             EcccccccccccCc---ccccCCCcccEEEc
Q 048810          330 LDLSNCWTLEVIAP---NVISKLSRLEELYM  357 (582)
Q Consensus       330 L~l~~~~~l~~lp~---~~l~~l~~L~~L~l  357 (582)
                      |++++| .+..+|+   ..++.+++|+.|++
T Consensus       118 L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A          118 LDLFNC-EVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             EECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             EeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence            555552 3444443   23445555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.39  E-value=1.1e-12  Score=119.21  Aligned_cols=105  Identities=17%  Similarity=0.228  Sum_probs=74.3

Q ss_pred             CccEEEcCCCCCCCCChh--hhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcc
Q 048810          258 GLKVLQFPGIGSSSLPSS--LDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDL  332 (582)
Q Consensus       258 ~Lr~L~l~~~~~~~lp~~--i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l  332 (582)
                      .|++|++++|.++.++..  ++.+++|++|++++|.++.  |..+..+++|++|++++|+++.++.. +..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            677777777777776543  6777777777777777776  45677777777777777777766554 667777777777


Q ss_pred             cccccccccCcccccCCCcccEEEcCCCccc
Q 048810          333 SNCWTLEVIAPNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       333 ~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      ++ +.+..+++..++.+++|++|++++|.+.
T Consensus       110 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          110 YD-NQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CC-CcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            77 4555554445777778888887777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.38  E-value=2.4e-12  Score=116.84  Aligned_cols=124  Identities=23%  Similarity=0.279  Sum_probs=103.4

Q ss_pred             cEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEccccccc
Q 048810          260 KVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWT  337 (582)
Q Consensus       260 r~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~  337 (582)
                      ++++++++.++.+|..+.  .+|++|++++|.++. |..+..+++|++|++++|.++.++. .+..+++|++|++++ +.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-Cc
Confidence            688999999999997664  589999999999988 7889999999999999999998875 488899999999999 57


Q ss_pred             ccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccc
Q 048810          338 LEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYA  394 (582)
Q Consensus       338 l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  394 (582)
                      +..+++..+..+++|++|++++|.+...        ....+..+++|+.|++++|.+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVV--------PEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBC--------CTTTTTTCTTCCEEECCSSCE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCee--------ChhhhhcCccccEEEeCCCCe
Confidence            8888877788999999999998876544        233567788888888887754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.34  E-value=1.6e-12  Score=116.36  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=59.8

Q ss_pred             CccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccc-cCCCCCccEEEeeCCCCCccch--hhcCCCCCCEEccc
Q 048810          258 GLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAK-VGQLKKLEVLSFRDSDIEQLPL--EIGQLRRLQLLDLS  333 (582)
Q Consensus       258 ~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~  333 (582)
                      +|++|++++|.++.+ ..++.+++|++|++++|.++. ++. +..+++|++|++++|.+..+|.  .++.+++|++|+++
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence            666666666666555 345566666666666666655 323 3556666666666666666655  55666666666666


Q ss_pred             ccccccccCcc---cccCCCcccEEEcCCCc
Q 048810          334 NCWTLEVIAPN---VISKLSRLEELYMGNSF  361 (582)
Q Consensus       334 ~~~~l~~lp~~---~l~~l~~L~~L~l~~~~  361 (582)
                      + +.+..+|..   .++.+++|+.|++++|.
T Consensus       122 ~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          122 R-NPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             S-SGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             C-CCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            6 344455542   24566666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.33  E-value=1.1e-12  Score=143.81  Aligned_cols=110  Identities=27%  Similarity=0.342  Sum_probs=95.3

Q ss_pred             CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEE
Q 048810          229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVL  307 (582)
Q Consensus       229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L  307 (582)
                      .+++|+.|+++++  ....++..+| .+++|++|+|++|.++.+|..++.|++|++|+|++|.++. |..++.|++|++|
T Consensus       222 ~l~~L~~L~Ls~n--~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          222 DDQLWHALDLSNL--QIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCCEEECTTS--CCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             cCCCCcEEECCCC--CCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            7788999999987  4557887775 7899999999999999999999999999999999999888 7889999999999


Q ss_pred             EeeCCCCCccchhhcCCCCCCEEcccccccccccC
Q 048810          308 SFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIA  342 (582)
Q Consensus       308 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp  342 (582)
                      +|++|.++.+|..++.+++|++|++++| .+...+
T Consensus       299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~  332 (727)
T 4b8c_D          299 YFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEKQF  332 (727)
T ss_dssp             ECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCSHH
T ss_pred             ECCCCCCCccChhhhcCCCccEEeCCCC-ccCCCC
Confidence            9999999999998999999999999995 454433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.30  E-value=1.6e-11  Score=109.90  Aligned_cols=105  Identities=21%  Similarity=0.382  Sum_probs=61.6

Q ss_pred             CCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcc
Q 048810          257 EGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDL  332 (582)
Q Consensus       257 ~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l  332 (582)
                      ++|++|++++|.++.+|. .++.+++|++|++++|.++. + ..+..+++|++|++++|.++.+|.. ++.+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            455666666666655543 34556666666666666655 2 2345666666666666666655544 355666666666


Q ss_pred             cccccccccCcccccCCCcccEEEcCCCcc
Q 048810          333 SNCWTLEVIAPNVISKLSRLEELYMGNSFK  362 (582)
Q Consensus       333 ~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~  362 (582)
                      ++ +.++.+|+..+..+++|++|++++|.+
T Consensus       108 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          108 DT-NQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cC-CcceEeCHHHhcCCcccCEEEecCCCe
Confidence            66 345556655455566666666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.29  E-value=9.5e-12  Score=132.04  Aligned_cols=122  Identities=24%  Similarity=0.246  Sum_probs=104.6

Q ss_pred             CccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccc
Q 048810          258 GLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCW  336 (582)
Q Consensus       258 ~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~  336 (582)
                      .|++|++++|.++.+|. ++.+++|++|++++|.++. |..++.+++|++|++++|.++.+| .++.+++|++|++++ +
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~-N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-N  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-S
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC-C
Confidence            58899999999999997 9999999999999999999 889999999999999999999999 899999999999999 5


Q ss_pred             ccccc--CcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810          337 TLEVI--APNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE  388 (582)
Q Consensus       337 ~l~~l--p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  388 (582)
                      .++.+  |.. ++.+++|+.|++++|.+...     .......+..+++|+.|+
T Consensus       519 ~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~-----~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          519 RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQE-----EGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCCSSSTTGG-GGGCTTCCEEECTTSGGGGS-----SSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCcHH-HhcCCCCCEEEecCCcCCCC-----ccHHHHHHHHCcccCccC
Confidence            67777  554 89999999999999986543     111122234478888875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.29  E-value=1.8e-11  Score=109.49  Aligned_cols=126  Identities=21%  Similarity=0.302  Sum_probs=104.3

Q ss_pred             ccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEccccc
Q 048810          259 LKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNC  335 (582)
Q Consensus       259 Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~  335 (582)
                      .+.++++++.++.+|..+.  .+|++|++++|+++. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++ 
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-
Confidence            5788999999999986554  689999999999988 4 4578999999999999999988876 58899999999999 


Q ss_pred             ccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810          336 WTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE  395 (582)
Q Consensus       336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  395 (582)
                      +.++.+|+..++.+++|++|++++|.+...        ....+..+++|+.|++++|.+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--------~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSV--------PDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCC--------CTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEe--------CHHHhcCCcccCEEEecCCCee
Confidence            578888887678899999999999876533        2234577888999998888654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.29  E-value=1.3e-13  Score=126.01  Aligned_cols=133  Identities=21%  Similarity=0.238  Sum_probs=91.6

Q ss_pred             HhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEE
Q 048810          252 FFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLL  330 (582)
Q Consensus       252 ~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L  330 (582)
                      .|..+++|++|++++|.++.+| .++.+++|++|++++|.++. |..+..+++|++|++++|.++.+| .++.+++|++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence            4577888888888888888777 78888888888888888777 566666778888888888888776 57778888888


Q ss_pred             cccccccccccCc-ccccCCCcccEEEcCCCccccccccCC---CccchhhccCCCCccEEE
Q 048810          331 DLSNCWTLEVIAP-NVISKLSRLEELYMGNSFKRWEKVEGG---SNASLVELNGLSKLTTLE  388 (582)
Q Consensus       331 ~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~~l~~l~~L~~L~  388 (582)
                      ++++ +.+..++. ..+..+++|++|++++|.+... ....   .......+..+++|+.|+
T Consensus       121 ~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          121 YMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYND-YKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHH-HHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccc-cccccchHHHHHHHHHhCCCcEEEC
Confidence            8887 45665553 2367788888888887765333 0000   000112256667777665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.23  E-value=4.2e-11  Score=106.61  Aligned_cols=101  Identities=22%  Similarity=0.371  Sum_probs=80.2

Q ss_pred             cEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchhh-cCCCCCCEEcccccc
Q 048810          260 KVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCW  336 (582)
Q Consensus       260 r~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~  336 (582)
                      +.++++++.++.+|..+.  .+|++|++++|.++.  +..+..+++|++|++++|+++.+|..+ ..+++|++|++++ +
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence            678888888888887664  688888888888887  456788888888888888888887764 7788888888888 5


Q ss_pred             cccccCcccccCCCcccEEEcCCCccc
Q 048810          337 TLEVIAPNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       337 ~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      .+..+|+..+..+++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            677777766778888888888887654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.22  E-value=4.7e-11  Score=105.90  Aligned_cols=102  Identities=20%  Similarity=0.304  Sum_probs=83.8

Q ss_pred             ccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEccccc
Q 048810          259 LKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNC  335 (582)
Q Consensus       259 Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~  335 (582)
                      .+.++++++.++.+|..+.  .+|++|++++|.++.  +..+..+++|++|++++|+++.+|.. +..+++|++|++++ 
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence            4688888888888887664  788899999998888  46688888999999999988888876 47888899999988 


Q ss_pred             ccccccCcccccCCCcccEEEcCCCccc
Q 048810          336 WTLEVIAPNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      +.+..+|+..+..+++|++|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5778888766788888888888888654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.19  E-value=5e-13  Score=122.12  Aligned_cols=143  Identities=19%  Similarity=0.201  Sum_probs=114.6

Q ss_pred             CccEEEcCCC--CCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEccccc
Q 048810          258 GLKVLQFPGI--GSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNC  335 (582)
Q Consensus       258 ~Lr~L~l~~~--~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~  335 (582)
                      .|+.+.+.++  .++.+|..++.+++|++|++++|.++.++.+..+++|++|++++|.++.+|..+..+++|++|++++ 
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-  102 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-  102 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-
Confidence            3444444443  4556677999999999999999999994499999999999999999999999888899999999999 


Q ss_pred             ccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcc-----------c-cc
Q 048810          336 WTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD-----------L-VS  403 (582)
Q Consensus       336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------~-~~  403 (582)
                      +.++.+|.  ++.+++|++|++++|.+...       ..+..+..+++|+.|++++|.+...+..           + .+
T Consensus       103 N~l~~l~~--~~~l~~L~~L~l~~N~i~~~-------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l  173 (198)
T 1ds9_A          103 NQIASLSG--IEKLVNLRVLYMSNNKITNW-------GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             EECCCHHH--HHHHHHSSEEEESEEECCCH-------HHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred             CcCCcCCc--cccCCCCCEEECCCCcCCch-------hHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence            47788873  88999999999999876532       1235788999999999999987544221           2 66


Q ss_pred             ccccEEE
Q 048810          404 VELQRYK  410 (582)
Q Consensus       404 ~~L~~L~  410 (582)
                      ++|+.|+
T Consensus       174 ~~L~~Ld  180 (198)
T 1ds9_A          174 PNLKKLD  180 (198)
T ss_dssp             SSCSEEC
T ss_pred             CCcEEEC
Confidence            7777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.14  E-value=1.1e-10  Score=115.53  Aligned_cols=103  Identities=14%  Similarity=-0.007  Sum_probs=74.9

Q ss_pred             hhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccc-ccccccccccccccccc
Q 048810          450 LLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLE-TLYLIGLANLETICCSQ  528 (582)
Q Consensus       450 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~-~L~l~~~~~L~~~~~~~  528 (582)
                      .+++|+.++|.++.........|   ..+++|+++.+.++  ++.++..    ....+++|+ .+.+.+  +++.++...
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF---~~~~~L~~l~l~~n--i~~I~~~----aF~~~~~L~~~l~l~~--~l~~I~~~a  292 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTF---AQKKYLLKIKLPHN--LKTIGQR----VFSNCGRLAGTLELPA--SVTAIEFGA  292 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTT---TTCTTCCEEECCTT--CCEECTT----TTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred             hcCCCeEEECCCCCcceecHhhh---hCCCCCCEEECCcc--cceehHH----HhhCChhccEEEEEcc--cceEEchhh
Confidence            35899999999876433333344   48999999999885  7777543    355667888 888876  788887765


Q ss_pred             ccCcccCCCccEEEEecccCcccccChhHHhhhhhcceee
Q 048810          529 LREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVG  568 (582)
Q Consensus       529 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~  568 (582)
                      |.   .+++|+.+.+... +++.++.. .+.++++|+.+.
T Consensus       293 F~---~c~~L~~l~l~~n-~i~~I~~~-aF~~~~~L~~ly  327 (329)
T 3sb4_A          293 FM---GCDNLRYVLATGD-KITTLGDE-LFGNGVPSKLIY  327 (329)
T ss_dssp             TT---TCTTEEEEEECSS-CCCEECTT-TTCTTCCCCEEE
T ss_pred             hh---CCccCCEEEeCCC-ccCccchh-hhcCCcchhhhc
Confidence            54   7889999998765 68888763 446777777765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.09  E-value=4.4e-10  Score=99.94  Aligned_cols=102  Identities=22%  Similarity=0.298  Sum_probs=65.8

Q ss_pred             EEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCCCCC-cc-ccCCCCCccEEEeeC
Q 048810          235 LFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCRLKD-IA-KVGQLKKLEVLSFRD  311 (582)
Q Consensus       235 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~l~~  311 (582)
                      .++++++  ....+|..+   .++|++|++++|.++.+ |..++.+++|++|+|++|+++. |. .+..+++|++|++++
T Consensus        16 ~l~~~~n--~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           16 LVNCQNI--RLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             EEECCSS--CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCC--CCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            4444443  333444433   25677777777777765 4567777777777777777777 33 356777777777777


Q ss_pred             CCCCccchh-hcCCCCCCEEcccccccccccC
Q 048810          312 SDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIA  342 (582)
Q Consensus       312 ~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp  342 (582)
                      |.++.+|.. +..+++|++|++++| .+...+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~  121 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNN-PWDCEC  121 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSS-CBCTTB
T ss_pred             CccceeCHHHhccccCCCEEEeCCC-Cccccc
Confidence            777777765 677777777777773 444433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=2.8e-10  Score=112.76  Aligned_cols=98  Identities=19%  Similarity=0.178  Sum_probs=57.8

Q ss_pred             CCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCccc-EEEcCCCccccccccCCCccchhhc
Q 048810          301 LKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLE-ELYMGNSFKRWEKVEGGSNASLVEL  378 (582)
Q Consensus       301 l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~l  378 (582)
                      +.+|+.+++++|+++.+|.. +..+.+|+.+++.++  +..++...|..+++|+ .+.+... +...        ....+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~-l~~I--------~~~aF  293 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPAS-VTAI--------EFGAF  293 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTT-CCEE--------CTTTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEccc-ceEE--------chhhh
Confidence            45666666666666666654 555666666666652  6666666666666666 6666552 2111        23455


Q ss_pred             cCCCCccEEEEEecccccCCccc--ccccccEE
Q 048810          379 NGLSKLTTLEIHVRYAEILPQDL--VSVELQRY  409 (582)
Q Consensus       379 ~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L  409 (582)
                      .++++|+.+++..+.+..++...  .+++|+.+
T Consensus       294 ~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          294 MGCDNLRYVLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             TTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             hCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence            66666666666666666665543  45555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.04  E-value=1e-09  Score=97.25  Aligned_cols=79  Identities=28%  Similarity=0.361  Sum_probs=53.2

Q ss_pred             CCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcc
Q 048810          257 EGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDL  332 (582)
Q Consensus       257 ~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l  332 (582)
                      +.|++|++++|.++.+ |..++.+++|++|++++|+++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            5666777777777665 4456677777777777777766 3 3356677777777777777766654 666777777777


Q ss_pred             ccc
Q 048810          333 SNC  335 (582)
Q Consensus       333 ~~~  335 (582)
                      ++|
T Consensus       110 ~~N  112 (170)
T 3g39_A          110 LNN  112 (170)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.90  E-value=9.6e-08  Score=96.68  Aligned_cols=262  Identities=11%  Similarity=0.097  Sum_probs=158.1

Q ss_pred             CCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCCC--ccccCCCCCccE
Q 048810          230 CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEV  306 (582)
Q Consensus       230 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~  306 (582)
                      +..++.+.+..   ....++...|.++ +|+.+.+..+ ++.++. .+.+ .+|+.+.+.. .++.  ...+.++.+|+.
T Consensus       112 ~~~l~~i~ip~---~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPN---SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCT---TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             cCCccEEEECC---ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence            35566666653   4556777778876 6999998766 655553 4555 3689998876 5555  467888999999


Q ss_pred             EEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccE
Q 048810          307 LSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTT  386 (582)
Q Consensus       307 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  386 (582)
                      +++..++++.+|...-...+|+.+.+..  .+..++...|..+++|+.+.+..+.. ..        ....+.+ .+|+.
T Consensus       185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l~-~I--------~~~aF~~-~~L~~  252 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENVS-TI--------GQEAFRE-SGITT  252 (401)
T ss_dssp             EECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTCC-EE--------CTTTTTT-CCCSE
T ss_pred             eecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCcc-Cc--------ccccccc-CCccE
Confidence            9999999999988766678999999875  47888888888999999999876521 11        1223444 67888


Q ss_pred             EEEEecccccCCccc--ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccC
Q 048810          387 LEIHVRYAEILPQDL--VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEG  464 (582)
Q Consensus       387 L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~  464 (582)
                      +.+ .+.+..++...  .+++|+.+.+..+...      ....        ..+.    +..+.. +++|+.+.|.+.  
T Consensus       253 i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~------~~~~--------~~I~----~~aF~~-c~~L~~l~l~~~--  310 (401)
T 4fdw_A          253 VKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN------DDPE--------AMIH----PYCLEG-CPKLARFEIPES--  310 (401)
T ss_dssp             EEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC------CCTT--------CEEC----TTTTTT-CTTCCEECCCTT--
T ss_pred             EEe-CCCccEEChhHhhCCCCCCEEEeCCcccc------CCcc--------cEEC----HHHhhC-CccCCeEEeCCc--
Confidence            888 45566665544  6777887776433220      0000        0000    111111 356677766532  


Q ss_pred             cccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccC-CCccEEEE
Q 048810          465 VPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSF-SNLRIIEV  543 (582)
Q Consensus       465 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~~L~~L~l  543 (582)
                      ++.+....  ...+++|+.+.|..  .++.+...    ....+ +|+.+.+.+ +.+..+....+.   .+ .+++.|.+
T Consensus       311 i~~I~~~a--F~~c~~L~~l~lp~--~l~~I~~~----aF~~~-~L~~l~l~~-n~~~~l~~~~F~---~~~~~l~~l~v  377 (401)
T 4fdw_A          311 IRILGQGL--LGGNRKVTQLTIPA--NVTQINFS----AFNNT-GIKEVKVEG-TTPPQVFEKVWY---GFPDDITVIRV  377 (401)
T ss_dssp             CCEECTTT--TTTCCSCCEEEECT--TCCEECTT----SSSSS-CCCEEEECC-SSCCBCCCSSCC---CSCTTCCEEEE
T ss_pred             eEEEhhhh--hcCCCCccEEEECc--cccEEcHH----hCCCC-CCCEEEEcC-CCCccccccccc---CCCCCccEEEe
Confidence            33332211  23667777777744  35555322    22333 677777765 344444433332   22 24555555


Q ss_pred             ec
Q 048810          544 EH  545 (582)
Q Consensus       544 ~~  545 (582)
                      -.
T Consensus       378 p~  379 (401)
T 4fdw_A          378 PA  379 (401)
T ss_dssp             CG
T ss_pred             CH
Confidence            43

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.84  E-value=6.7e-09  Score=103.59  Aligned_cols=96  Identities=24%  Similarity=0.230  Sum_probs=46.7

Q ss_pred             EcCCC-CCCCCChhhhcccCccEEEcCC-CCCCC-c-cccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEccccccc
Q 048810          263 QFPGI-GSSSLPSSLDRLINLQTLCLDG-CRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWT  337 (582)
Q Consensus       263 ~l~~~-~~~~lp~~i~~L~~L~~L~L~~-~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~  337 (582)
                      +.+++ .++.+|. ++.+.+|++|+|++ |.++. + ..++.+.+|++|+|++|+++.+|+ .++++++|++|+|++ +.
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~   91 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NA   91 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SC
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-Cc
Confidence            44444 4555555 55555555555553 45544 2 335555555555555555554433 235555555555555 34


Q ss_pred             ccccCcccccCCCcccEEEcCCCc
Q 048810          338 LEVIAPNVISKLSRLEELYMGNSF  361 (582)
Q Consensus       338 l~~lp~~~l~~l~~L~~L~l~~~~  361 (582)
                      +..+|+..+..++ |+.|++.+|.
T Consensus        92 l~~~~~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           92 LESLSWKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             CSCCCSTTTCSCC-CCEEECCSSC
T ss_pred             cceeCHHHcccCC-ceEEEeeCCC
Confidence            4455544333333 5555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.84  E-value=6.3e-10  Score=111.64  Aligned_cols=167  Identities=12%  Similarity=0.055  Sum_probs=86.4

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC--CChhhhcccCc
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLDRLINL  282 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~L~~L  282 (582)
                      ......++.+++++|.+....                   ...+...+.....+|++|+|++|.++.  +..-...+.+|
T Consensus        68 ~~~~~~L~~L~Ls~n~l~~~~-------------------~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L  128 (372)
T 3un9_A           68 AEVLSSLRQLNLAGVRMTPVK-------------------CTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA  128 (372)
T ss_dssp             HHHHTTCCEEECTTSCCCHHH-------------------HHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTE
T ss_pred             HHHHhhCCEEEecCCCCCHHH-------------------HHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhc
Confidence            344567888888887764211                   011111111123566666666666543  11222334566


Q ss_pred             cEEEcCCCCCCC--cccc-----CCCCCccEEEeeCCCCCc-----cchhhcCCCCCCEEcccccccccccC----cccc
Q 048810          283 QTLCLDGCRLKD--IAKV-----GQLKKLEVLSFRDSDIEQ-----LPLEIGQLRRLQLLDLSNCWTLEVIA----PNVI  346 (582)
Q Consensus       283 ~~L~L~~~~l~~--~~~~-----~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~lp----~~~l  346 (582)
                      ++|+|++|.+..  ...+     ...++|++|++++|.++.     ++..+..+++|++|++++| .++...    ...+
T Consensus       129 ~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L  207 (372)
T 3un9_A          129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQL  207 (372)
T ss_dssp             EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHG
T ss_pred             cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHH
Confidence            666666666654  2222     234566666766666652     4444556666777776663 343321    1124


Q ss_pred             cCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810          347 SKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE  395 (582)
Q Consensus       347 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  395 (582)
                      ...++|++|++++|.+...    ........+...++|++|++++|.+.
T Consensus       208 ~~~~~L~~L~Ls~N~i~~~----g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          208 DRNRQLQELNVAYNGAGDT----AALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             GGCSCCCEEECCSSCCCHH----HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             hcCCCcCeEECCCCCCCHH----HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            4556677777766654322    00112233445566777777766654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.72  E-value=2.7e-07  Score=93.44  Aligned_cols=254  Identities=13%  Similarity=0.132  Sum_probs=158.4

Q ss_pred             cCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEE
Q 048810          209 KDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLC  286 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~  286 (582)
                      ..++.+.+.. .+..++... .-.+|+.+.+..+   ...+....|.++ .|+.+.+.+ .++.++ ..+.+|.+|+.++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~---i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG---LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT---CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC-ccCEehHhhcccCCccEEEeCCC---ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            3445555543 344443322 2237888887643   667777778775 699999886 565554 5688899999999


Q ss_pred             cCCCCCCC-ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          287 LDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       287 L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      +..+.++. +.......+|+.+.+.. .++.++.. +.++++|+.+.+..  .+..++...|.. .+|+.+.+..+.. .
T Consensus       187 l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~i~-~  261 (401)
T 4fdw_A          187 LSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNGVT-N  261 (401)
T ss_dssp             CTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETTCC-E
T ss_pred             cCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCCcc-E
Confidence            99888887 43333368899999874 47777654 66788999999876  367777776777 7899988854321 1


Q ss_pred             ccccCCCccchhhccCCCCccEEEEEecccc-----cCCccc--ccccccEEEEEeccccccccccccccccceecccce
Q 048810          365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAE-----ILPQDL--VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKS  437 (582)
Q Consensus       365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~  437 (582)
                      .        ....+.++++|+.+.+..+...     .++...  .+++|+.+.+..            .+.        .
T Consensus       262 I--------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~------------~i~--------~  313 (401)
T 4fdw_A          262 I--------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE------------SIR--------I  313 (401)
T ss_dssp             E--------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT------------TCC--------E
T ss_pred             E--------ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC------------ceE--------E
Confidence            1        2456778889999999876654     344433  666777765420            000        0


Q ss_pred             eehccccchHHHhhhcccceeeccccCccccc-ccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCc-ccccccc
Q 048810          438 VSILLRNPGMRMLLQRTEDLWLETLEGVPSVV-HELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFP-LLETLYL  515 (582)
Q Consensus       438 ~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~L~~L~l  515 (582)
                      +.    ...+.. +++|+.+.|..+  ++.+. ..|   ..+ +|+.+.+.++. +..+...    ...+++ .++.|.+
T Consensus       314 I~----~~aF~~-c~~L~~l~lp~~--l~~I~~~aF---~~~-~L~~l~l~~n~-~~~l~~~----~F~~~~~~l~~l~v  377 (401)
T 4fdw_A          314 LG----QGLLGG-NRKVTQLTIPAN--VTQINFSAF---NNT-GIKEVKVEGTT-PPQVFEK----VWYGFPDDITVIRV  377 (401)
T ss_dssp             EC----TTTTTT-CCSCCEEEECTT--CCEECTTSS---SSS-CCCEEEECCSS-CCBCCCS----SCCCSCTTCCEEEE
T ss_pred             Eh----hhhhcC-CCCccEEEECcc--ccEEcHHhC---CCC-CCCEEEEcCCC-Ccccccc----cccCCCCCccEEEe
Confidence            10    111222 367888888543  33332 233   366 89999998863 3333322    223333 5666666


Q ss_pred             cc
Q 048810          516 IG  517 (582)
Q Consensus       516 ~~  517 (582)
                      ..
T Consensus       378 p~  379 (401)
T 4fdw_A          378 PA  379 (401)
T ss_dssp             CG
T ss_pred             CH
Confidence            44

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.68  E-value=3e-09  Score=106.74  Aligned_cols=111  Identities=16%  Similarity=0.073  Sum_probs=73.7

Q ss_pred             cCCCCccEEEcCCCCCCCCC-hhh-----hcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCC-----c
Q 048810          254 EGMEGLKVLQFPGIGSSSLP-SSL-----DRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIE-----Q  316 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~~~~~lp-~~i-----~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~-----~  316 (582)
                      ..+++|+.|+|++|.++... ..+     ....+|++|+|++|.++.  .    ..+...++|++|++++|.+.     .
T Consensus       123 ~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~  202 (372)
T 3un9_A          123 PVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL  202 (372)
T ss_dssp             HHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred             HHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence            34457888888888775421 222     235678888888888765  2    33467788888888888776     3


Q ss_pred             cchhhcCCCCCCEEcccccccccccCcc----cccCCCcccEEEcCCCccccc
Q 048810          317 LPLEIGQLRRLQLLDLSNCWTLEVIAPN----VISKLSRLEELYMGNSFKRWE  365 (582)
Q Consensus       317 lp~~i~~l~~L~~L~l~~~~~l~~lp~~----~l~~l~~L~~L~l~~~~~~~~  365 (582)
                      ++..+...++|++|++++| .++.....    .+...++|++|++++|.+...
T Consensus       203 L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          203 LAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            4556677788888888885 44432211    144568888888888876443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.68  E-value=3.2e-08  Score=98.65  Aligned_cols=100  Identities=14%  Similarity=0.055  Sum_probs=43.6

Q ss_pred             EEecCC-CCcCCCCCCCCCCccEEEeec-cCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCC
Q 048810          214 ISLPYR-GDQVLPQRMRCPRLGLFLLHT-IGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGC  290 (582)
Q Consensus       214 l~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~  290 (582)
                      ++.+++ .+..+|....+++|+.|++++ |  ....++...|.++++|++|+|++|.++.+| ..+++|++|++|+|++|
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQ--HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCS--SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCC--CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            344444 444444411344455555543 3  333444444444555555555555444432 23444445555555555


Q ss_pred             CCCC-ccccCCCCCccEEEeeCCCCC
Q 048810          291 RLKD-IAKVGQLKKLEVLSFRDSDIE  315 (582)
Q Consensus       291 ~l~~-~~~~~~l~~L~~L~l~~~~l~  315 (582)
                      +++. |+.+.....|++|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccceeCHHHcccCCceEEEeeCCCcc
Confidence            4444 322222222444444444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.51  E-value=2.6e-06  Score=86.23  Aligned_cols=62  Identities=24%  Similarity=0.314  Sum_probs=37.0

Q ss_pred             cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810          296 AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS  360 (582)
Q Consensus       296 ~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (582)
                      ..+.++.+|+.+.+..+ +..++.. +..+.+|+.+.+..  .++.++...+..+..|+.+.+..+
T Consensus       156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTT
T ss_pred             hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCC
Confidence            34556677777777543 3444433 45566777777654  255565555666777776665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.50  E-value=1.3e-06  Score=88.64  Aligned_cols=123  Identities=12%  Similarity=0.240  Sum_probs=69.2

Q ss_pred             CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCcc
Q 048810          229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLE  305 (582)
Q Consensus       229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~  305 (582)
                      +|.+|+.+.+..   ....+....|.++.+|+.+++.++ ++.++ ..+.++.+|+.+.+..+ +..  ...+.....+.
T Consensus        69 ~c~~L~~i~lp~---~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           69 GCRKVTEIKIPS---TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE  143 (394)
T ss_dssp             TCTTEEEEECCT---TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred             CCCCceEEEeCC---CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence            566677776643   345566666777777777777543 33333 34555666665544332 111  22333333222


Q ss_pred             EEEeeCCCCCccc-hhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810          306 VLSFRDSDIEQLP-LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS  360 (582)
Q Consensus       306 ~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (582)
                      ....  ..+..+. ..+.++.+|+.+.+.+  .+..++...+..+.+|+.+.+..+
T Consensus       144 ~~~~--~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          144 ITIP--EGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             EECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT
T ss_pred             cccC--ccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC
Confidence            2211  1222232 2356778888888865  356677777888888888887654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.42  E-value=1.6e-07  Score=93.36  Aligned_cols=138  Identities=19%  Similarity=0.240  Sum_probs=62.7

Q ss_pred             HHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--ccccC--CCCCccEEEeeCC--------CCCccc
Q 048810          251 HFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--IAKVG--QLKKLEVLSFRDS--------DIEQLP  318 (582)
Q Consensus       251 ~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~--~l~~L~~L~l~~~--------~l~~lp  318 (582)
                      .++..+++|+.|+++++.-..+|. + .+++|++|++..|.+..  ...+.  .+++|++|+|+.+        .+..+.
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            344566666666666653223333 2 25666666666666544  33332  5666666666421        011121


Q ss_pred             hhh--cCCCCCCEEcccccccccccCccc--ccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccc
Q 048810          319 LEI--GQLRRLQLLDLSNCWTLEVIAPNV--ISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYA  394 (582)
Q Consensus       319 ~~i--~~l~~L~~L~l~~~~~l~~lp~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  394 (582)
                      ..+  +.+++|++|++.+|......+...  .+.+++|++|+++.|.+...    ........+..+++|+.|+++.|.+
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~----G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE----GARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH----HHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH----HHHHHHhhcccCCcceEEECCCCcC
Confidence            111  235566666665543221111110  12355666666655543221    0001122233455566666655543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=1.1e-06  Score=76.76  Aligned_cols=84  Identities=15%  Similarity=0.252  Sum_probs=53.1

Q ss_pred             CCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCC-CCC--ccccCCC----CCccEEEeeCC-CCCc-cchhhcCCCC
Q 048810          257 EGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCR-LKD--IAKVGQL----KKLEVLSFRDS-DIEQ-LPLEIGQLRR  326 (582)
Q Consensus       257 ~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~-l~~--~~~~~~l----~~L~~L~l~~~-~l~~-lp~~i~~l~~  326 (582)
                      ..|+.||++++.++.. -..+..+++|++|+|++|. +++  ...+..+    ++|++|++++| +++. =-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            4678888888776541 2345677777777777774 555  5666654    36777777776 4551 1123556677


Q ss_pred             CCEEcccccccccc
Q 048810          327 LQLLDLSNCWTLEV  340 (582)
Q Consensus       327 L~~L~l~~~~~l~~  340 (582)
                      |++|++++|..++.
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            77777777766654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.16  E-value=1.8e-06  Score=85.66  Aligned_cols=155  Identities=19%  Similarity=0.161  Sum_probs=96.8

Q ss_pred             cCCCCccEEEcCCCCC----------CCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCc-cchhhc
Q 048810          254 EGMEGLKVLQFPGIGS----------SSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQ-LPLEIG  322 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~~~----------~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~  322 (582)
                      ..+++|+.|.+.+...          ..++..+..+++|+.|++++|.-...+.+. +++|++|++..|.+.. ....+.
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHH
Confidence            3456777777755432          135566778899999999988322222243 8899999999887652 222333


Q ss_pred             --CCCCCCEEcccccc-------cccccCcccc--cCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEe
Q 048810          323 --QLRRLQLLDLSNCW-------TLEVIAPNVI--SKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHV  391 (582)
Q Consensus       323 --~l~~L~~L~l~~~~-------~l~~lp~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  391 (582)
                        .+++|++|+++.+.       .+..+.+. +  +.+++|++|++.+|.+...     ........+.+++|+.|+++.
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~p~Lr~L~L~~~~i~~~-----~~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRFPNLKWLGIVDAEEQNV-----VVEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTCTTCCEEEEESCTTHHH-----HHHHHHHCSSGGGCSEEECCS
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCCCCcCEEeCCCCCCchH-----HHHHHHhCccCCCCCEEECCC
Confidence              78999999985321       12222221 2  3578999999988765432     001122234578999999998


Q ss_pred             ccccc-----CCccc-ccccccEEEEEecc
Q 048810          392 RYAEI-----LPQDL-VSVELQRYKMFIGE  415 (582)
Q Consensus       392 ~~~~~-----~~~~~-~~~~L~~L~l~~~~  415 (582)
                      |.+..     ++..+ .+++|+.|+++.+.
T Consensus       289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          289 GVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            87654     23332 56788888775443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.16  E-value=5.5e-07  Score=78.57  Aligned_cols=90  Identities=13%  Similarity=0.106  Sum_probs=55.3

Q ss_pred             hcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCC----CCcccccccccccccccccccc
Q 048810          452 QRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCE----VFPLLETLYLIGLANLETICCS  527 (582)
Q Consensus       452 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~L~~~~~~  527 (582)
                      .+|+.|++++|. +++...  ..+..+++|++|+|++|..++...    .....    ..++|+.|++++|.++++-.-.
T Consensus        61 ~~L~~LDLs~~~-Itd~GL--~~L~~~~~L~~L~L~~C~~ItD~g----L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGF--DHMEGLQYVEKIRLCKCHYIEDGC----LERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGG--GGGTTCSCCCEEEEESCTTCCHHH----HHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             ceEeEEeCcCCC-ccHHHH--HHhcCCCCCCEEEeCCCCccCHHH----HHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            367888888876 443211  114478888888888887554321    00111    1356888888888777654332


Q ss_pred             cccCcccCCCccEEEEecccCccc
Q 048810          528 QLREDQSFSNLRIIEVEHCNKLKH  551 (582)
Q Consensus       528 ~~~~~~~~~~L~~L~l~~c~~L~~  551 (582)
                      .   +..+++|++|++++|++++.
T Consensus       134 ~---L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          134 A---LHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             H---GGGCTTCCEEEEESCTTCCC
T ss_pred             H---HhcCCCCCEEECCCCCCCCc
Confidence            2   44677888888888877765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.08  E-value=2.2e-06  Score=76.67  Aligned_cols=111  Identities=14%  Similarity=0.110  Sum_probs=71.5

Q ss_pred             HHhcCCCCccEEEcCCC-CCCC-----CChhhhcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCCc--
Q 048810          251 HFFEGMEGLKVLQFPGI-GSSS-----LPSSLDRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIEQ--  316 (582)
Q Consensus       251 ~~~~~l~~Lr~L~l~~~-~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~~--  316 (582)
                      ..+...+.|+.|+|++| .++.     +...+...++|++|+|++|.+..  .    ..+...++|++|++++|.+..  
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34567888888888888 7753     44556667788888888888765  2    334455778888888887772  


Q ss_pred             ---cchhhcCCCCCCEEcc--cccccccccCc----ccccCCCcccEEEcCCCcc
Q 048810          317 ---LPLEIGQLRRLQLLDL--SNCWTLEVIAP----NVISKLSRLEELYMGNSFK  362 (582)
Q Consensus       317 ---lp~~i~~l~~L~~L~l--~~~~~l~~lp~----~~l~~l~~L~~L~l~~~~~  362 (582)
                         +...+...++|++|++  ++ +.++.-..    ..+...++|++|++++|.+
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence               4555666677777777  44 33433110    1134446666666666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.05  E-value=0.00027  Score=71.30  Aligned_cols=81  Identities=14%  Similarity=0.112  Sum_probs=45.1

Q ss_pred             CCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChh
Q 048810          477 GFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFS  556 (582)
Q Consensus       477 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~  556 (582)
                      .+++|+.+.+..  .++.++..    ....+.+|+.+.|.+  +++.+....|.   .+.+|+++.|-.  +++.++.. 
T Consensus       286 ~c~~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~~aF~---~C~~L~~i~ip~--sv~~I~~~-  351 (394)
T 4gt6_A          286 NCPALQDIEFSS--RITELPES----VFAGCISLKSIDIPE--GITQILDDAFA---GCEQLERIAIPS--SVTKIPES-  351 (394)
T ss_dssp             TCTTCCEEECCT--TCCEECTT----TTTTCTTCCEEECCT--TCCEECTTTTT---TCTTCCEEEECT--TCCBCCGG-
T ss_pred             cccccccccCCC--cccccCce----eecCCCCcCEEEeCC--cccEehHhHhh---CCCCCCEEEECc--ccCEEhHh-
Confidence            566677766643  34455322    233445666666643  45556554443   556677777643  35555542 


Q ss_pred             HHhhhhhcceeeecc
Q 048810          557 MAKNLLWLQKVGVEE  571 (582)
Q Consensus       557 ~~~~l~~L~~L~i~~  571 (582)
                      ...++++|+.+++.+
T Consensus       352 aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          352 AFSNCTALNNIEYSG  366 (394)
T ss_dssp             GGTTCTTCCEEEESS
T ss_pred             HhhCCCCCCEEEECC
Confidence            345667777776654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.94  E-value=9.3e-06  Score=76.41  Aligned_cols=78  Identities=26%  Similarity=0.293  Sum_probs=56.9

Q ss_pred             cCCCCccEEEcCCCCCCCCC---hhhhcccCccEEEcCCCCCCCccccCCCC--CccEEEeeCCCCCc-cc-------hh
Q 048810          254 EGMEGLKVLQFPGIGSSSLP---SSLDRLINLQTLCLDGCRLKDIAKVGQLK--KLEVLSFRDSDIEQ-LP-------LE  320 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~~~~~lp---~~i~~L~~L~~L~L~~~~l~~~~~~~~l~--~L~~L~l~~~~l~~-lp-------~~  320 (582)
                      ..+++|+.|+|++|.++.++   ..++.+++|++|+|++|.+++...+..+.  +|++|++++|.+.. +|       ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            56788899999998887644   56678888888888888888754444444  88888888887763 33       12


Q ss_pred             hcCCCCCCEEc
Q 048810          321 IGQLRRLQLLD  331 (582)
Q Consensus       321 i~~l~~L~~L~  331 (582)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            55677777775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.89  E-value=8.9e-06  Score=72.63  Aligned_cols=84  Identities=12%  Similarity=0.107  Sum_probs=66.5

Q ss_pred             HhcCCCCccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCCCCC------ccccCCCCCccEEEe--eCCCCC---
Q 048810          252 FFEGMEGLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCRLKD------IAKVGQLKKLEVLSF--RDSDIE---  315 (582)
Q Consensus       252 ~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~l--~~~~l~---  315 (582)
                      .+...+.|++|+|++|.++.     +...+...++|++|+|++|.+..      ...+...++|++|++  ++|.+.   
T Consensus        60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g  139 (185)
T 1io0_A           60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  139 (185)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH
Confidence            34667899999999998864     45566677889999999999876      255677788999999  778887   


Q ss_pred             --ccchhhcCCCCCCEEccccc
Q 048810          316 --QLPLEIGQLRRLQLLDLSNC  335 (582)
Q Consensus       316 --~lp~~i~~l~~L~~L~l~~~  335 (582)
                        .+...+...++|++|++++|
T Consensus       140 ~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          140 EMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHhCCCcCEEeccCC
Confidence              25566777789999999885

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.68  E-value=9.5e-06  Score=76.34  Aligned_cols=79  Identities=18%  Similarity=0.305  Sum_probs=47.7

Q ss_pred             hcccCccEEEcCCCCCCCc----cccCCCCCccEEEeeCCCCCccchhhcCCC--CCCEEcccccccccccCc------c
Q 048810          277 DRLINLQTLCLDGCRLKDI----AKVGQLKKLEVLSFRDSDIEQLPLEIGQLR--RLQLLDLSNCWTLEVIAP------N  344 (582)
Q Consensus       277 ~~L~~L~~L~L~~~~l~~~----~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~l~~lp~------~  344 (582)
                      .++++|++|+|++|+++.+    ..+..+++|++|+|++|.++.+. .+..+.  +|++|++.+|.-...+|.      .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            4567777788877777763    23446777777777777777552 234343  677777777443333331      1


Q ss_pred             cccCCCcccEEE
Q 048810          345 VISKLSRLEELY  356 (582)
Q Consensus       345 ~l~~l~~L~~L~  356 (582)
                      .+..+++|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            245566666665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.54  E-value=0.0057  Score=61.49  Aligned_cols=81  Identities=16%  Similarity=0.173  Sum_probs=53.4

Q ss_pred             hhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccccccccccccccccc
Q 048810          451 LQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLR  530 (582)
Q Consensus       451 ~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~  530 (582)
                      +++|+.+.+..  .++.+....  ...+.+|+.+.|.+  .++.+.+.    ....+.+|+.+.|..  +++.+...+|.
T Consensus       287 c~~L~~i~l~~--~i~~I~~~a--F~~c~~L~~i~lp~--~v~~I~~~----aF~~C~~L~~i~ip~--sv~~I~~~aF~  354 (394)
T 4gt6_A          287 CPALQDIEFSS--RITELPESV--FAGCISLKSIDIPE--GITQILDD----AFAGCEQLERIAIPS--SVTKIPESAFS  354 (394)
T ss_dssp             CTTCCEEECCT--TCCEECTTT--TTTCTTCCEEECCT--TCCEECTT----TTTTCTTCCEEEECT--TCCBCCGGGGT
T ss_pred             ccccccccCCC--cccccCcee--ecCCCCcCEEEeCC--cccEehHh----HhhCCCCCCEEEECc--ccCEEhHhHhh
Confidence            36777777753  233333221  34789999999865  46666433    345567888888853  57777766554


Q ss_pred             CcccCCCccEEEEecc
Q 048810          531 EDQSFSNLRIIEVEHC  546 (582)
Q Consensus       531 ~~~~~~~L~~L~l~~c  546 (582)
                         .+++|+.+.+.+.
T Consensus       355 ---~C~~L~~i~~~~~  367 (394)
T 4gt6_A          355 ---NCTALNNIEYSGS  367 (394)
T ss_dssp             ---TCTTCCEEEESSC
T ss_pred             ---CCCCCCEEEECCc
Confidence               7788999988764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.35  E-value=0.0064  Score=60.70  Aligned_cols=122  Identities=11%  Similarity=0.094  Sum_probs=64.7

Q ss_pred             CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC-c-cccCCCCCcc
Q 048810          229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLE  305 (582)
Q Consensus       229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~  305 (582)
                      ...+|+.+.+..   ....+++..|.++.+|+.+.+..+ ++.++ ..+.++ +|..+.+..+ ++. . ..+. ..+|+
T Consensus        44 ~~~~i~~v~ip~---~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~-~~~L~  116 (379)
T 4h09_A           44 DRDRISEVRVNS---GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQ-GTDLD  116 (379)
T ss_dssp             GGGGCSEEEECT---TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTT-TCCCS
T ss_pred             cccCCEEEEeCC---CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceec-cCCcc
Confidence            445677776653   355677777788888888887643 44443 234444 4555555432 222 1 2222 23677


Q ss_pred             EEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810          306 VLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS  360 (582)
Q Consensus       306 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~  360 (582)
                      .+.+..+ +..+....-.-.+|+.+.+..  .+..+....+....+++...+...
T Consensus       117 ~i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~  168 (379)
T 4h09_A          117 DFEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSN  168 (379)
T ss_dssp             EEECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTT
T ss_pred             cccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccc
Confidence            7777543 344443332333455554433  344444444566666766665543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.62  E-value=0.04  Score=54.80  Aligned_cols=103  Identities=15%  Similarity=0.211  Sum_probs=48.2

Q ss_pred             HhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCC
Q 048810          252 FFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRL  327 (582)
Q Consensus       252 ~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L  327 (582)
                      .|..+..|+.+.+..+ +..+ ...+..+.+|+.+.+..+ ++.  ...+.++.+|+.+.+.. ++..++.. +..+.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccc
Confidence            3444555555555433 1221 123444555555555433 222  23344455555555533 34444332 3445555


Q ss_pred             CEEcccccccccccCcccccCCCcccEEEcC
Q 048810          328 QLLDLSNCWTLEVIAPNVISKLSRLEELYMG  358 (582)
Q Consensus       328 ~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~  358 (582)
                      +.+.+.+ +.++.++...|.++.+|+.+.+.
T Consensus       289 ~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          289 TKVVMDN-SAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             CEEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccccccc-cccceehhhhhcCCCCCCEEEcC
Confidence            5555544 33455555555555555555554

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.57  E-value=0.26  Score=48.06  Aligned_cols=147  Identities=14%  Similarity=0.154  Sum_probs=84.1

Q ss_pred             ceEEccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHcc-CChHHHHHHHHHHhcccccccc
Q 048810            5 KEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKN-ESLDTWKDVLRQLRSSYAKEID   83 (582)
Q Consensus         5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~-~~~~~W~~~l~~l~~~~~~~~~   83 (582)
                      ..+++.+|+.+|+.+++...........+ .+...+|++.|+|.|+++..++..+.. .+...|   ...+.        
T Consensus       196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~-~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~--------  263 (350)
T 2qen_A          196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP-ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRA---MKRTL--------  263 (350)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH---HHHHH--------
T ss_pred             ceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHH---HHHHH--------
Confidence            47899999999999999875421111111 357889999999999999999876542 233222   11111        


Q ss_pred             chhhhHHHHHHHHHhhc---CchhHHHHHHHhccCCCCCccChhHHHHHhhc-cCcccccccHHHHHHHHHHHHHHHHhc
Q 048810           84 GMEKNVYLSIKLSYDFL---RSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMG-MGYFKEVYTVEEARSRVHTLIGKLKSL  159 (582)
Q Consensus        84 ~~~~~i~~~l~~sy~~L---~~~~lk~cfly~~~fp~~~~i~~~~li~~Wia-eg~~~~~~~~~~~~~~~~~~~~~L~~~  159 (582)
                         +.+...+.-.+..+   +.. .+..+..+|.   + .++...+.....+ .|   + .+..    .+..+++.|++.
T Consensus       264 ---~~~~~~~~~~l~~l~~~~~~-~~~~l~~la~---g-~~~~~~l~~~~~~~~~---~-~~~~----~~~~~l~~L~~~  327 (350)
T 2qen_A          264 ---EVAKGLIMGELEELRRRSPR-YVDILRAIAL---G-YNRWSLIRDYLAVKGT---K-IPEP----RLYALLENLKKM  327 (350)
T ss_dssp             ---HHHHHHHHHHHHHHHHHCHH-HHHHHHHHHT---T-CCSHHHHHHHHHHTTC---C-CCHH----HHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHHHHHHHhCChh-HHHHHHHHHh---C-CCCHHHHHHHHHHHhC---C-CCHH----HHHHHHHHHHhC
Confidence               11111111112222   555 7888888887   2 2454555443321 11   0 1112    234467888889


Q ss_pred             cccccCCCCccEEh-hhHHHHHH
Q 048810          160 CLLLDGDAEDEVKM-HDVIRVVA  181 (582)
Q Consensus       160 ~l~~~~~~~~~~~m-hdl~~~l~  181 (582)
                      +++...+  +.+++ |.+++++.
T Consensus       328 gli~~~~--~~y~~~~p~~~~~~  348 (350)
T 2qen_A          328 NWIVEED--NTYKIADPVVATVL  348 (350)
T ss_dssp             TSEEEET--TEEEESSHHHHHHH
T ss_pred             CCEEecC--CEEEEecHHHHHHH
Confidence            9986542  34544 66776653

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=94.98  E-value=0.34  Score=47.32  Aligned_cols=146  Identities=12%  Similarity=0.151  Sum_probs=83.8

Q ss_pred             ceEEccCCCHHHHHHHHHHhhC-CCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHcc-CChHHHHH-HHHHHhcccccc
Q 048810            5 KEIQIDVLSKEEALQLFKKIVG-DSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKN-ESLDTWKD-VLRQLRSSYAKE   81 (582)
Q Consensus         5 ~~~~l~~L~~~~~~~Lf~~~a~-~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~-~~~~~W~~-~l~~l~~~~~~~   81 (582)
                      ..+++.+|+.+|+.+++...+. ......+.    .+|+++|+|.|+++..++..+.. .+...|-. +.+..       
T Consensus       202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------  270 (357)
T 2fna_A          202 STVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------  270 (357)
T ss_dssp             EEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------
T ss_pred             ceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------
Confidence            5789999999999999987542 11112221    89999999999999999987653 23333321 11110       


Q ss_pred             ccchhhhHHHHHH-HHHh--hcCchhHHHHHHHhccCCCCCccChhHHHHHhh-ccCcccccccHHHHHHHHHHHHHHHH
Q 048810           82 IDGMEKNVYLSIK-LSYD--FLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGM-GMGYFKEVYTVEEARSRVHTLIGKLK  157 (582)
Q Consensus        82 ~~~~~~~i~~~l~-~sy~--~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wi-aeg~~~~~~~~~~~~~~~~~~~~~L~  157 (582)
                          ...+...+. +.++  .+|.. .+..+..+|.   +.  +...+....- ..|.   ..+..    ....+++.|+
T Consensus       271 ----~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~---g~--~~~~l~~~~~~~~g~---~~~~~----~~~~~L~~L~  333 (357)
T 2fna_A          271 ----KKLILKEFENFLHGREIARKR-YLNIMRTLSK---CG--KWSDVKRALELEEGI---EISDS----EIYNYLTQLT  333 (357)
T ss_dssp             ----HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT---CB--CHHHHHHHHHHHHCS---CCCHH----HHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhhccccccHH-HHHHHHHHHc---CC--CHHHHHHHHHHhcCC---CCCHH----HHHHHHHHHH
Confidence                011111121 1111  57776 7888888887   22  4444432110 1120   00112    2345678888


Q ss_pred             hccccccCCCCccEE-hhhHHHHH
Q 048810          158 SLCLLLDGDAEDEVK-MHDVIRVV  180 (582)
Q Consensus       158 ~~~l~~~~~~~~~~~-mhdl~~~l  180 (582)
                      +.+++...+  +.++ .|.++++.
T Consensus       334 ~~gli~~~~--~~y~f~~~~~~~~  355 (357)
T 2fna_A          334 KHSWIIKEG--EKYCPSEPLISLA  355 (357)
T ss_dssp             HTTSEEESS--SCEEESSHHHHHH
T ss_pred             hCCCEEecC--CEEEecCHHHHHh
Confidence            999986553  4455 56777764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.94  E-value=0.04  Score=45.35  Aligned_cols=55  Identities=18%  Similarity=0.263  Sum_probs=40.6

Q ss_pred             EEEeeCCCCC--ccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccc
Q 048810          306 VLSFRDSDIE--QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       306 ~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      .++.++.+++  .+|..+  -.+|++|+|++ +.++.+|.+.|..+++|+.|++.+|...
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCee
Confidence            5666777777  777532  24688888888 6788888877778888888888887653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.91  E-value=0.035  Score=45.66  Aligned_cols=31  Identities=19%  Similarity=0.223  Sum_probs=12.9

Q ss_pred             ccEEEcCCCCCCC--ccccCCCCCccEEEeeCC
Q 048810          282 LQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDS  312 (582)
Q Consensus       282 L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~  312 (582)
                      |++|+|++|+++.  ...+..+.+|++|+|.+|
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            4444444444444  122333444444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.87  E-value=0.023  Score=50.31  Aligned_cols=82  Identities=15%  Similarity=0.124  Sum_probs=48.7

Q ss_pred             hcCCCCccEEEcCCC-CCCC-----CChhhhcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCC-----
Q 048810          253 FEGMEGLKVLQFPGI-GSSS-----LPSSLDRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIE-----  315 (582)
Q Consensus       253 ~~~l~~Lr~L~l~~~-~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~-----  315 (582)
                      ...-+.|+.|+|+++ .+..     +.+.+..=..|+.|+|++|.+.+  .    ..+..=+.|++|+|++|.|.     
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345567778888774 5542     33445555577777777777665  1    23334466777777777665     


Q ss_pred             ccchhhcCCCCCCEEcccc
Q 048810          316 QLPLEIGQLRRLQLLDLSN  334 (582)
Q Consensus       316 ~lp~~i~~l~~L~~L~l~~  334 (582)
                      .+-..+..-+.|++|++++
T Consensus       117 ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHhhCCceeEEECCC
Confidence            2333444445566666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.08  E-value=0.043  Score=48.56  Aligned_cols=82  Identities=10%  Similarity=0.077  Sum_probs=58.7

Q ss_pred             hcCCCCccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCC---C---
Q 048810          253 FEGMEGLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDI---E---  315 (582)
Q Consensus       253 ~~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l---~---  315 (582)
                      +..-+.|+.|+|++|.+..     +.+.+..=+.|++|+|++|.|..  .    ..+..=+.|++|+++++..   .   
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            4667889999999999864     45556666789999999999876  2    4566667799999986533   3   


Q ss_pred             --ccchhhcCCCCCCEEcccc
Q 048810          316 --QLPLEIGQLRRLQLLDLSN  334 (582)
Q Consensus       316 --~lp~~i~~l~~L~~L~l~~  334 (582)
                        .+-..+..-+.|+.|+++.
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHhCCCcCeEeccC
Confidence              2333445556777777765

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=92.38  E-value=0.25  Score=49.44  Aligned_cols=136  Identities=13%  Similarity=0.041  Sum_probs=78.3

Q ss_pred             EEccCCCHHHHHHHHHHhh---CC-CCCCcchHHHHHHHHHHhC------CcchHHHHHHHH-Hc-----cC---ChHHH
Q 048810            7 IQIDVLSKEEALQLFKKIV---GD-SMKTSAFQSIAVEIVGRCG------GLPVALITLAKA-LK-----NE---SLDTW   67 (582)
Q Consensus         7 ~~l~~L~~~~~~~Lf~~~a---~~-~~~~~~l~~~~~~i~~~c~------GlPLai~~~g~~-L~-----~~---~~~~W   67 (582)
                      +++++|+.++++++|...+   |. ...+   .+....|+++|+      |.|..+..+... ..     +.   +.+.+
T Consensus       210 i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v  286 (412)
T 1w5s_A          210 LHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLV  286 (412)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHH
T ss_pred             eeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence            8999999999999997654   32 1222   457888999999      999655554432 21     11   33444


Q ss_pred             HHHHHHHhccccccccchhhhHHHHHHHHHhhcCchhHHHHHHHhccCC--CCCccChhHHHHHhh--c---cCcccccc
Q 048810           68 KDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFS--EGHAIPVPYLLRYGM--G---MGYFKEVY  140 (582)
Q Consensus        68 ~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp--~~~~i~~~~li~~Wi--a---eg~~~~~~  140 (582)
                      ..++.....             ...+.-++..||.+ .+.++..+|.+.  .+..++..++...+.  +   .|. .. .
T Consensus       287 ~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~  350 (412)
T 1w5s_A          287 RKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KP-R  350 (412)
T ss_dssp             HHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CC-C
T ss_pred             HHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CC-C
Confidence            444332110             12233456778887 788888788654  234566666554442  1   111 00 0


Q ss_pred             cHHHHHHHHHHHHHHHHhccccccC
Q 048810          141 TVEEARSRVHTLIGKLKSLCLLLDG  165 (582)
Q Consensus       141 ~~~~~~~~~~~~~~~L~~~~l~~~~  165 (582)
                      +    ...+.+++++|++.+++...
T Consensus       351 ~----~~~~~~~l~~L~~~gli~~~  371 (412)
T 1w5s_A          351 G----YTQYHIYLKHLTSLGLVDAK  371 (412)
T ss_dssp             C----HHHHHHHHHHHHHTTSEEEE
T ss_pred             C----HHHHHHHHHHHHhCCCEEee
Confidence            1    12344578889999998643

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=80.78  E-value=2.4  Score=40.53  Aligned_cols=69  Identities=16%  Similarity=0.058  Sum_probs=47.7

Q ss_pred             ceEEccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHcc--------C-ChHHHHHHHHHH
Q 048810            5 KEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKN--------E-SLDTWKDVLRQL   74 (582)
Q Consensus         5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~--------~-~~~~W~~~l~~l   74 (582)
                      .++.+.+++.+|..+++.+.+......-+ .+....++++++|.|-.+.-+...+..        . +.+....++..+
T Consensus       161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~  238 (324)
T 1hqc_A          161 IVEHLEYYTPEELAQGVMRDARLLGVRIT-EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL  238 (324)
T ss_dssp             CEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence            57899999999999999888752211111 357788999999999887766655431        1 455555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	582
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	4e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.8 bits (149), Expect = 4e-11
 Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 7/105 (6%)

Query: 7   IQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDT 66
           I++  L  +E     +            + +  + +    G P  L+   K+ + ++ + 
Sbjct: 180 IEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEK 239

Query: 67  WKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLL 111
              +  +L S   + + G+E         SY  L     + + +L
Sbjct: 240 MAQLNNKLES---RGLVGVEC----ITPYSYKSLAMALQRCVEVL 277

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 279 LINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTL 338
           L NL  L L    + DI+ V  L KL+ L F ++ +  +   +  L  +  L   +    
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS 364

Query: 339 EVIAPNVISKLSRLEELYMGN 359
           ++     ++ L+R+ +L + +
Sbjct: 365 DLTP---LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL 332
            S +  L  LQ L     ++ D++ +  L  +  LS   + I  L   +  L R+  L L
Sbjct: 322 ISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGL 380

Query: 333 SN 334
           ++
Sbjct: 381 ND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 273 PSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL 332
             S   L  + TL  D   +K I  V  L  L  ++F ++ +  +   +  L +L  + +
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILM 95

Query: 333 SNCW 336
           +N  
Sbjct: 96  NNNQ 99

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 37/168 (22%)

Query: 256 MEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIE 315
           +  L  L   G     + + L  L NL  L L   ++ ++A +  L KL  L    + I 
Sbjct: 218 LTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 276

Query: 316 QLPLEIG---------------------QLRRLQLLDLSNCWTLEVIAPNVISKLSRLEE 354
            +    G                      L+ L  L L      ++     +S L++L+ 
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQR 333

Query: 355 LYMGN----------SFKRWEKVEGGSN--ASLVELNGLSKLTTLEIH 390
           L+  N          +      +  G N  + L  L  L+++T L ++
Sbjct: 334 LFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 279 LINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTL 338
           L       L    + D      L ++  L      I+ +   +  L  L  ++ SN   L
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QL 78

Query: 339 EVIAPNVISKLSRLEELYMGNSFKRW 364
             I P  +  L++L ++ M N+    
Sbjct: 79  TDITP--LKNLTKLVDILMNNNQIAD 102

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 1/89 (1%)

Query: 270 SSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQL 329
             L   + +  +     LD   L+    +       VL+ R S    L +    +  L  
Sbjct: 10  EQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLS 69

Query: 330 LDLSNCWTLEVIA-PNVISKLSRLEELYM 357
           L+LSN     +    +++ K   L+ L +
Sbjct: 70  LNLSNNRLYRLDDMSSIVQKAPNLKILNL 98

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 283 QTLCLDGCRLKDIAKVGQLKKLEVLSFR--DSDIEQLPLEIGQLRRLQLLDLSNCWTLEV 340
           QTL L G  L      G+L    V++FR   S ++Q   E     R+Q +DLSN      
Sbjct: 3   QTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 341 IAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390
               ++S+ S+L+ L +             S+  +  L   S L  L + 
Sbjct: 62  TLHGILSQCSKLQNLSLEGL--------RLSDPIVNTLAKNSNLVRLNLS 103

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 7/74 (9%)

Query: 279 LINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTL 338
             +L+ L +   +L ++       +LE L    + + ++P     L++   L +     L
Sbjct: 283 PPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPELPQNLKQ---LHVEYN-PL 336

Query: 339 EVIAPNVISKLSRL 352
               P++   +  L
Sbjct: 337 REF-PDIPESVEDL 349

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 11/97 (11%), Positives = 37/97 (38%), Gaps = 12/97 (12%)

Query: 280 INLQTLCLDGCRLKD---IAKVGQLKKLEVLSFR-----DSDIEQLPLEIGQLRRLQLLD 331
           +++Q+L +    L D      +  L++ +V+        ++  + +   +     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 332 LSNC----WTLEVIAPNVISKLSRLEELYMGNSFKRW 364
           L +       +  +   + +   ++++L + N     
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 271 SLPSSLDRLINLQTLCLDGCRLKDIAK-VGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQL 329
           ++   L++L+ +  L L   RL+ +   +  L+ LEVL   D+ +E +   +  L RLQ 
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQE 69

Query: 330 LDLSNCWTLEVIAPNVISKLSRLEELYM-GNSFKRWEKVEGGSNASLVELNGL 381
           L L N    +  A   +    RL  L + GNS  + E ++      L  ++ +
Sbjct: 70  LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 279 LINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSN 334
           L  L TL L+  ++ DI  +  L KL+ L    + I  L   +  L+ L +L+L +
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 251 HFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFR 310
                +  L  L+      S +   L  L NL  + L   ++ D++ +     L +++  
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

Query: 311 D 311
           +
Sbjct: 226 N 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	582
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.79
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.73
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.72
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.71
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.68
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.68
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.59
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.41
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.38
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.33
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.31
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.93
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.9
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.78
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.65
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.77
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.0
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.93
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.74
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.1

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=1.1e-19  Score=182.77  Aligned_cols=299  Identities=16%  Similarity=0.183  Sum_probs=188.8

Q ss_pred             hccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEE
Q 048810          207 IRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLC  286 (582)
Q Consensus       207 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~  286 (582)
                      ...+++.|+++++.+..+.....+++|++|+++++  ....+++  ++++++|++|++++|.+..++. ++.+++|++|+
T Consensus        42 ~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N--~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~  116 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN--QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  116 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             HhCCCCEEECCCCCCCCccccccCCCCCEEeCcCC--cCCCCcc--ccCCcccccccccccccccccc-ccccccccccc
Confidence            45678999999999988865557889999999987  4555654  6889999999999999888764 88899999999


Q ss_pred             cCCCCCCCccccCCCCCccEEEeeCCCCCcc------------------------------------------chhhcCC
Q 048810          287 LDGCRLKDIAKVGQLKKLEVLSFRDSDIEQL------------------------------------------PLEIGQL  324 (582)
Q Consensus       287 L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~l------------------------------------------p~~i~~l  324 (582)
                      +.++.++..........+..+....+.+..+                                          +.....+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (384)
T d2omza2         117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  196 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence            9888877744444555555555443322211                                          1123344


Q ss_pred             CCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccc
Q 048810          325 RRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSV  404 (582)
Q Consensus       325 ~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  404 (582)
                      ++++.+++++ +.+..+++  .+..++|++|++++|.+..          +..+..+++|+.|++.+|.+..++....++
T Consensus       197 ~~~~~l~l~~-n~i~~~~~--~~~~~~L~~L~l~~n~l~~----------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  263 (384)
T d2omza2         197 TNLESLIATN-NQISDITP--LGILTNLDELSLNGNQLKD----------IGTLASLTNLTDLDLANNQISNLAPLSGLT  263 (384)
T ss_dssp             TTCSEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCC----------CGGGGGCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred             cccceeeccC-CccCCCCc--ccccCCCCEEECCCCCCCC----------cchhhcccccchhccccCccCCCCcccccc
Confidence            4455555544 23333333  2344455555555443221          223444555555555555544444333444


Q ss_pred             cccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEE
Q 048810          405 ELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHL  484 (582)
Q Consensus       405 ~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L  484 (582)
                      +|+.|++..+..                     ...   + .+.. ++.++.+.+..+.. +.+..    ...+++++.|
T Consensus       264 ~L~~L~l~~~~l---------------------~~~---~-~~~~-~~~l~~l~~~~n~l-~~~~~----~~~~~~l~~L  312 (384)
T d2omza2         264 KLTELKLGANQI---------------------SNI---S-PLAG-LTALTNLELNENQL-EDISP----ISNLKNLTYL  312 (384)
T ss_dssp             TCSEEECCSSCC---------------------CCC---G-GGTT-CTTCSEEECCSSCC-SCCGG----GGGCTTCSEE
T ss_pred             cCCEeeccCccc---------------------CCC---C-cccc-cccccccccccccc-ccccc----cchhcccCeE
Confidence            455544432221                     111   1 1122 36677777776653 33322    3378899999


Q ss_pred             EEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhc
Q 048810          485 YVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWL  564 (582)
Q Consensus       485 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L  564 (582)
                      +++++ .++.++      ....+|+|++|+++++ +++.++.     .+.+++|++|++++| +++.+++   +.++++|
T Consensus       313 ~ls~n-~l~~l~------~l~~l~~L~~L~L~~n-~l~~l~~-----l~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L  375 (384)
T d2omza2         313 TLYFN-NISDIS------PVSSLTKLQRLFFANN-KVSDVSS-----LANLTNINWLSAGHN-QISDLTP---LANLTRI  375 (384)
T ss_dssp             ECCSS-CCSCCG------GGGGCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECCSS-CCCBCGG---GTTCTTC
T ss_pred             ECCCC-CCCCCc------ccccCCCCCEEECCCC-CCCCChh-----HcCCCCCCEEECCCC-cCCCChh---hccCCCC
Confidence            99887 344432      3567899999999986 6776642     567899999999988 6888864   5789999


Q ss_pred             ceeeecc
Q 048810          565 QKVGVEE  571 (582)
Q Consensus       565 ~~L~i~~  571 (582)
                      +.|+|++
T Consensus       376 ~~L~L~~  382 (384)
T d2omza2         376 TQLGLND  382 (384)
T ss_dssp             SEEECCC
T ss_pred             CEeeCCC
Confidence            9999986

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=2.2e-18  Score=167.25  Aligned_cols=267  Identities=16%  Similarity=0.213  Sum_probs=195.2

Q ss_pred             CccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCCC--ccccCCCCCccEEE
Q 048810          232 RLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLS  308 (582)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~  308 (582)
                      ..++++..+.  ....+|..+   .+.+++|++++|.++.+|+ .+.++++|++|++++|.+..  +..+.++++|++|+
T Consensus        11 ~~~~~~C~~~--~L~~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDL--GLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTS--CCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCC--CCCccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence            4455655553  455667654   3679999999999999886 68999999999999999888  56799999999999


Q ss_pred             eeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810          309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE  388 (582)
Q Consensus       309 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  388 (582)
                      +++|+++.+|..  ....++.|++.+ +.+..++...+.....++.+....+.....      ......+..+++|+.++
T Consensus        86 l~~n~l~~l~~~--~~~~l~~L~~~~-n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~------~~~~~~~~~l~~L~~l~  156 (305)
T d1xkua_          86 LSKNQLKELPEK--MPKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSS------GIENGAFQGMKKLSYIR  156 (305)
T ss_dssp             CCSSCCSBCCSS--CCTTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGG------GBCTTGGGGCTTCCEEE
T ss_pred             ccCCccCcCccc--hhhhhhhhhccc-cchhhhhhhhhhcccccccccccccccccc------CCCccccccccccCccc
Confidence            999999999874  346889999988 567777776677788888888877654332      12345677889999999


Q ss_pred             EEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccc
Q 048810          389 IHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSV  468 (582)
Q Consensus       389 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~  468 (582)
                      +.++.+..++... +++|+.|++..+..                     ...  .+..+.. +++++.|+++++......
T Consensus       157 l~~n~l~~l~~~~-~~~L~~L~l~~n~~---------------------~~~--~~~~~~~-~~~l~~L~~s~n~l~~~~  211 (305)
T d1xkua_         157 IADTNITTIPQGL-PPSLTELHLDGNKI---------------------TKV--DAASLKG-LNNLAKLGLSFNSISAVD  211 (305)
T ss_dssp             CCSSCCCSCCSSC-CTTCSEEECTTSCC---------------------CEE--CTGGGTT-CTTCCEEECCSSCCCEEC
T ss_pred             cccCCccccCccc-CCccCEEECCCCcC---------------------CCC--ChhHhhc-cccccccccccccccccc
Confidence            9999888776654 56788777643322                     000  0222322 367888888887654443


Q ss_pred             cccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccC---cccCCCccEEEEec
Q 048810          469 VHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLRE---DQSFSNLRIIEVEH  545 (582)
Q Consensus       469 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~---~~~~~~L~~L~l~~  545 (582)
                      +..+   ..+++|++|++++| .++.++.     ....+++|++|++++ ++++.++...|..   ....++|+.|++++
T Consensus       212 ~~~~---~~l~~L~~L~L~~N-~L~~lp~-----~l~~l~~L~~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~  281 (305)
T d1xkua_         212 NGSL---ANTPHLRELHLNNN-KLVKVPG-----GLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFS  281 (305)
T ss_dssp             TTTG---GGSTTCCEEECCSS-CCSSCCT-----TTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             cccc---cccccceeeecccc-ccccccc-----ccccccCCCEEECCC-CccCccChhhccCcchhcccCCCCEEECCC
Confidence            4443   37899999999998 5666652     356789999999998 5788887654432   34567899999999


Q ss_pred             cc
Q 048810          546 CN  547 (582)
Q Consensus       546 c~  547 (582)
                      +|
T Consensus       282 N~  283 (305)
T d1xkua_         282 NP  283 (305)
T ss_dssp             SS
T ss_pred             Cc
Confidence            86

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=3.3e-18  Score=171.70  Aligned_cols=316  Identities=14%  Similarity=0.107  Sum_probs=184.1

Q ss_pred             CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEE
Q 048810          229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLS  308 (582)
Q Consensus       229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~  308 (582)
                      .+.+|++|.+.++  ....+. . +..+++|++|++++|.++.+|. ++++++|++|++++|++.....++++++|+.|+
T Consensus        42 ~l~~l~~L~l~~~--~I~~l~-g-l~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~  116 (384)
T d2omza2          42 DLDQVTTLQADRL--GIKSID-G-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT  116 (384)
T ss_dssp             HHTTCCEEECCSS--CCCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             HhCCCCEEECCCC--CCCCcc-c-cccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccccccccccccccccccc
Confidence            4567788888776  333442 2 3667888888888888877764 777888888888888877755677888888888


Q ss_pred             eeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccc---------cccCCCccchhhcc
Q 048810          309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWE---------KVEGGSNASLVELN  379 (582)
Q Consensus       309 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~---------~~~~~~~~~~~~l~  379 (582)
                      ++++.++.++. ......+..+.... +.+..+........................         ..............
T Consensus       117 ~~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (384)
T d2omza2         117 LFNNQITDIDP-LKNLTNLNRLELSS-NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA  194 (384)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEEEEE-EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             ccccccccccc-cccccccccccccc-ccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            87777776654 33344555554433 122211111000000000000000000000         00001111234455


Q ss_pred             CCCCccEEEEEecccccCCcccccccccEEEEEeccc-cccccccccccccceecccceeehccccchHHHhhhccccee
Q 048810          380 GLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA-RGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLW  458 (582)
Q Consensus       380 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~  458 (582)
                      .+++++.+.++.+.+..++.....++|+.|.+..+.. ........+.++.+.+..+.....    ..+.. +++|++|+
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~-~~~L~~L~  269 (384)
T d2omza2         195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL----APLSG-LTKLTELK  269 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC----GGGTT-CTTCSEEE
T ss_pred             cccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCC----Ccccc-cccCCEee
Confidence            6677777777777776665544566777777655443 111223334444554444322211    12222 37788888


Q ss_pred             eccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCc
Q 048810          459 LETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNL  538 (582)
Q Consensus       459 L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L  538 (582)
                      ++++.. ...+.    ...++.++.+.+..+. ++.+.      ....+++++.|++++ .+++.++.     .+.+|+|
T Consensus       270 l~~~~l-~~~~~----~~~~~~l~~l~~~~n~-l~~~~------~~~~~~~l~~L~ls~-n~l~~l~~-----l~~l~~L  331 (384)
T d2omza2         270 LGANQI-SNISP----LAGLTALTNLELNENQ-LEDIS------PISNLKNLTYLTLYF-NNISDISP-----VSSLTKL  331 (384)
T ss_dssp             CCSSCC-CCCGG----GTTCTTCSEEECCSSC-CSCCG------GGGGCTTCSEEECCS-SCCSCCGG-----GGGCTTC
T ss_pred             ccCccc-CCCCc----cccccccccccccccc-ccccc------ccchhcccCeEECCC-CCCCCCcc-----cccCCCC
Confidence            877653 33322    3367788888877663 22221      356678999999988 46666542     5689999


Q ss_pred             cEEEEecccCcccccChhHHhhhhhcceeeeccCcchHHHh
Q 048810          539 RIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMII  579 (582)
Q Consensus       539 ~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~  579 (582)
                      ++|++++| +++.++.   +.++++|++|++++| +++.++
T Consensus       332 ~~L~L~~n-~l~~l~~---l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         332 QRLFFANN-KVSDVSS---LANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             CEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCBCG
T ss_pred             CEEECCCC-CCCCChh---HcCCCCCCEEECCCC-cCCCCh
Confidence            99999999 7888763   578999999999887 455443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-17  Score=158.21  Aligned_cols=193  Identities=22%  Similarity=0.173  Sum_probs=164.6

Q ss_pred             CcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCC
Q 048810          210 DPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDG  289 (582)
Q Consensus       210 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~  289 (582)
                      ....++.+++++..+|..+. ++++.|++++|  ....++...|.++++|++|++++|.++.+|. ++.+++|++|++++
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N--~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSEN--LLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSH   86 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC-TTCCEEECTTS--CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCS
T ss_pred             CCeEEEccCCCCCeeCcCcC-cCCCEEECcCC--cCCCcCHHHhhcccccccccccccccccccc-cccccccccccccc
Confidence            44556888888888887653 68999999987  6667887788999999999999999998874 67899999999999


Q ss_pred             CCCCC-ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810          290 CRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV  367 (582)
Q Consensus       290 ~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (582)
                      |+++. +..+..+++|++|+++++.+..++.. ...+.++++|++.+ +.+..+|+..+..+++|+.+++++|.+...  
T Consensus        87 N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~--  163 (266)
T d1p9ag_          87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTEL--  163 (266)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCC--
T ss_pred             ccccccccccccccccccccccccccceeeccccccccccccccccc-cccceeccccccccccchhccccccccccc--
Confidence            99988 78889999999999999988876554 67789999999999 578888888788899999999999976544  


Q ss_pred             cCCCccchhhccCCCCccEEEEEecccccCCccc-ccccccEEEEEecc
Q 048810          368 EGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMFIGE  415 (582)
Q Consensus       368 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~  415 (582)
                            ....+..+++|+.|++++|.++.+|..+ .+++|+.|.+.++.
T Consensus       164 ------~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         164 ------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ------CccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence                  3456788999999999999999999877 78889998886544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.73  E-value=6.5e-18  Score=164.51  Aligned_cols=107  Identities=19%  Similarity=0.278  Sum_probs=47.8

Q ss_pred             cCCCCccEEEcCC-CCCC-CCChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCC-ccchhhcCCCCCC
Q 048810          254 EGMEGLKVLQFPG-IGSS-SLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQ  328 (582)
Q Consensus       254 ~~l~~Lr~L~l~~-~~~~-~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~  328 (582)
                      .++++|++|++++ |.+. .+|..+++|++|++|++++|++..  +..+..+.+|+++++++|.+. .+|..++++++|+
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~  152 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccc
Confidence            4455555555543 3333 344445555555555555554444  233444445555555444322 3444444555555


Q ss_pred             EEcccccccccccCcccccCCCcc-cEEEcCCCc
Q 048810          329 LLDLSNCWTLEVIAPNVISKLSRL-EELYMGNSF  361 (582)
Q Consensus       329 ~L~l~~~~~l~~lp~~~l~~l~~L-~~L~l~~~~  361 (582)
                      +++++++...+.+|.. ++.+.++ +.+.++.|.
T Consensus       153 ~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         153 GITFDGNRISGAIPDS-YGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EEECCSSCCEEECCGG-GGCCCTTCCEEECCSSE
T ss_pred             eeeccccccccccccc-ccccccccccccccccc
Confidence            5555443322333433 3333333 444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=1e-16  Score=155.37  Aligned_cols=267  Identities=15%  Similarity=0.147  Sum_probs=149.4

Q ss_pred             EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCC
Q 048810          212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGC  290 (582)
Q Consensus       212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~  290 (582)
                      +.++-++..+..+|..+ .+++++|+++++  ....+++..|.++++|++|+++++.+..+ |..+.++++|++|++++|
T Consensus        13 ~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N--~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDL-PPDTALLDLQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TEEECTTSCCCSCCCSC-CTTCCEEECCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCCccCCCC-CCCCCEEECcCC--cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            33444455555665544 245666666665  45556655556666777777776666664 345666667777777766


Q ss_pred             CCCC-ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEccccccc-ccccCcccccCCCcccEEEcCCCccccccc
Q 048810          291 RLKD-IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWT-LEVIAPNVISKLSRLEELYMGNSFKRWEKV  367 (582)
Q Consensus       291 ~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~-l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (582)
                      +++. |..  ....|+.|++..+.+..++.. +.....++.++...+.. ........+..+++|+.+++.+|.....  
T Consensus        90 ~l~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l--  165 (305)
T d1xkua_          90 QLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI--  165 (305)
T ss_dssp             CCSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC--
T ss_pred             ccCcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc--
Confidence            6666 332  234566666666666665544 33445555665554321 1111122355566666666666543221  


Q ss_pred             cCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEeccccccccccccccccceecccceeehccccc
Q 048810          368 EGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNP  445 (582)
Q Consensus       368 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~  445 (582)
                             +.  .-.++|+.|++++|.....+...  .++.++.|.++.+..                   ..+.    +.
T Consensus       166 -------~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l-------------------~~~~----~~  213 (305)
T d1xkua_         166 -------PQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-------------------SAVD----NG  213 (305)
T ss_dssp             -------CS--SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC-------------------CEEC----TT
T ss_pred             -------Cc--ccCCccCEEECCCCcCCCCChhHhhccccccccccccccc-------------------cccc----cc
Confidence                   11  12356666666666554433322  445555555433222                   0000    22


Q ss_pred             hHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccc--cCCCCcccccccccccccccc
Q 048810          446 GMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRV--GCEVFPLLETLYLIGLANLET  523 (582)
Q Consensus       446 ~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~L~~  523 (582)
                      ++.. +++|++|+|++|. ++.++..+   ..+++|++|++++| .++.++...+..  .....++|+.|++.+ +.++.
T Consensus       214 ~~~~-l~~L~~L~L~~N~-L~~lp~~l---~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~-N~~~~  286 (305)
T d1xkua_         214 SLAN-TPHLRELHLNNNK-LVKVPGGL---ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFS-NPVQY  286 (305)
T ss_dssp             TGGG-STTCCEEECCSSC-CSSCCTTT---TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCS-SSSCG
T ss_pred             cccc-cccceeeeccccc-cccccccc---ccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCC-CcCcc
Confidence            3333 3789999999885 45555554   47899999999987 577765432211  234567889999988 33544


Q ss_pred             c
Q 048810          524 I  524 (582)
Q Consensus       524 ~  524 (582)
                      +
T Consensus       287 ~  287 (305)
T d1xkua_         287 W  287 (305)
T ss_dssp             G
T ss_pred             C
Confidence            3

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.71  E-value=1.4e-17  Score=162.13  Aligned_cols=246  Identities=14%  Similarity=0.108  Sum_probs=181.1

Q ss_pred             cCcEEEEecCCCCc---CCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-CChhhhcccCcc
Q 048810          209 KDPIAISLPYRGDQ---VLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLDRLINLQ  283 (582)
Q Consensus       209 ~~~~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~L~  283 (582)
                      .+++.|+++++.+.   .+|..+ ++++|++|+++++....+.+|..+ +++++|++|++++|.+.. .|..+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhc
Confidence            47899999999885   466666 899999999987314555788775 889999999999999987 456788999999


Q ss_pred             EEEcCCCCCCC--ccccCCCCCccEEEeeCCCCC-ccchhhcCCCCC-CEEcccccccccccCcccccCCCcccEEEcCC
Q 048810          284 TLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRL-QLLDLSNCWTLEVIAPNVISKLSRLEELYMGN  359 (582)
Q Consensus       284 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L-~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~  359 (582)
                      ++++++|.+..  |..++++++|+++++++|.+. .+|..++.+.++ +.+++++ +.+...++..++.+..+ .+++..
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~-n~l~~~~~~~~~~l~~~-~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTFANLNLA-FVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCGGGGGCCCS-EEECCS
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccc-ccccccccccccccccc-cccccc
Confidence            99999998766  789999999999999999888 789999998876 7888888 45555444446666554 688877


Q ss_pred             CccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceee
Q 048810          360 SFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVS  439 (582)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~  439 (582)
                      +.....        .+..+..+++|+.+++.++.+...+..                                       
T Consensus       207 ~~~~~~--------~~~~~~~~~~l~~l~~~~~~l~~~~~~---------------------------------------  239 (313)
T d1ogqa_         207 NMLEGD--------ASVLFGSDKNTQKIHLAKNSLAFDLGK---------------------------------------  239 (313)
T ss_dssp             SEEEEC--------CGGGCCTTSCCSEEECCSSEECCBGGG---------------------------------------
T ss_pred             cccccc--------ccccccccccccccccccccccccccc---------------------------------------
Confidence            665444        456677788888888776654322211                                       


Q ss_pred             hccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccc
Q 048810          440 ILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLA  519 (582)
Q Consensus       440 ~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  519 (582)
                             +.. +++|+.|++++|.....+|..+.   .+++|++|+|++|.--..+|      ..+.+++|+.+.+.+-+
T Consensus       240 -------~~~-~~~L~~L~Ls~N~l~g~iP~~l~---~L~~L~~L~Ls~N~l~g~iP------~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         240 -------VGL-SKNLNGLDLRNNRIYGTLPQGLT---QLKFLHSLNVSFNNLCGEIP------QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             -------CCC-CTTCCEEECCSSCCEECCCGGGG---GCTTCCEEECCSSEEEEECC------CSTTGGGSCGGGTCSSS
T ss_pred             -------ccc-ccccccccCccCeecccCChHHh---CCCCCCEEECcCCcccccCC------CcccCCCCCHHHhCCCc
Confidence                   111 26777788887775545666543   78888888888874222343      24567788888887744


Q ss_pred             cc
Q 048810          520 NL  521 (582)
Q Consensus       520 ~L  521 (582)
                      .+
T Consensus       303 ~l  304 (313)
T d1ogqa_         303 CL  304 (313)
T ss_dssp             EE
T ss_pred             cc
Confidence            34

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.69  E-value=2e-18  Score=163.93  Aligned_cols=99  Identities=13%  Similarity=0.122  Sum_probs=88.2

Q ss_pred             ceEEccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHHhccccccccc
Q 048810            5 KEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEIDG   84 (582)
Q Consensus         5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~   84 (582)
                      +.|+|++|+.+|||+||+++||.....+..++++++||++|+|+||||+++|+.|+.++.++|.+..+.++....     
T Consensus       178 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~-----  252 (277)
T d2a5yb3         178 EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGL-----  252 (277)
T ss_dssp             EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCS-----
T ss_pred             ceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcH-----
Confidence            679999999999999999999966666778999999999999999999999999999999999999998865432     


Q ss_pred             hhhhHHHHHHHHHhhcCchhHHHHHHH
Q 048810           85 MEKNVYLSIKLSYDFLRSEEAKSLFLL  111 (582)
Q Consensus        85 ~~~~i~~~l~~sy~~L~~~~lk~cfly  111 (582)
                        .++..++.+||++||++ +|.||-+
T Consensus       253 --~~v~~il~~sY~~L~~~-lk~c~~~  276 (277)
T d2a5yb3         253 --VGVECITPYSYKSLAMA-LQRCVEV  276 (277)
T ss_dssp             --STTCCCSSSSSSSHHHH-HHHHHHT
T ss_pred             --HHHHHHHHHHHhcccHH-HHHHHHh
Confidence              66888999999999999 9999976

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.68  E-value=2.5e-15  Score=148.37  Aligned_cols=305  Identities=17%  Similarity=0.160  Sum_probs=186.8

Q ss_pred             cCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcC
Q 048810          209 KDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLD  288 (582)
Q Consensus       209 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~  288 (582)
                      .++++|+++++.+..+|..  .++|++|+++++  ....+|.    .+.+|+.|++++|.++.++.-   ...|++|+++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N--~l~~lp~----~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCN--SLTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSS--CCSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCC--CCccccc----chhhhhhhhhhhcccchhhhh---cccccccccc
Confidence            4688999999999999864  578999999987  5556764    357899999999998877642   1369999999


Q ss_pred             CCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccc--
Q 048810          289 GCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK--  366 (582)
Q Consensus       289 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~--  366 (582)
                      +|.+...+.++.+++|++|+++++.+...|..   ...+..+.+..+. .....  .++.++.++.+.+.++......  
T Consensus       107 ~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~-~~~~~--~l~~l~~l~~L~l~~n~~~~~~~~  180 (353)
T d1jl5a_         107 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ-LEELP--ELQNLPFLTAIYADNNSLKKLPDL  180 (353)
T ss_dssp             SSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCC--CCTTCTTCCEEECCSSCCSSCCCC
T ss_pred             ccccccccchhhhccceeeccccccccccccc---cccccchhhcccc-ccccc--cccccccceecccccccccccccc
Confidence            99998865678999999999999988877654   3456666666532 22222  2678888899988876533220  


Q ss_pred             --------ccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceeccccee
Q 048810          367 --------VEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSV  438 (582)
Q Consensus       367 --------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~  438 (582)
                              ..............++.|+.+.++.+....++..  ..++..+.+..... .........+....+..... 
T Consensus       181 ~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~--~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~-  256 (353)
T d1jl5a_         181 PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYL-TDLPELPQSLTFLDVSENIF-  256 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCC-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc--cccccccccccccc-cccccccccccccccccccc-
Confidence                    0001111223345566777777776665554432  23344443332221 11111111111111111000 


Q ss_pred             ehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccccc
Q 048810          439 SILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGL  518 (582)
Q Consensus       439 ~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~  518 (582)
                            ..+..+.......++..+. +...      ...+++|++|+|++| .++.++        ..+++|++|++++ 
T Consensus       257 ------~~l~~l~~~~~~~~~~~~~-~~~~------~~~~~~L~~L~Ls~N-~l~~lp--------~~~~~L~~L~L~~-  313 (353)
T d1jl5a_         257 ------SGLSELPPNLYYLNASSNE-IRSL------CDLPPSLEELNVSNN-KLIELP--------ALPPRLERLIASF-  313 (353)
T ss_dssp             ------SEESCCCTTCCEEECCSSC-CSEE------CCCCTTCCEEECCSS-CCSCCC--------CCCTTCCEEECCS-
T ss_pred             ------cccccccchhcccccccCc-cccc------cccCCCCCEEECCCC-ccCccc--------cccCCCCEEECCC-
Confidence                  0000011122223332222 1111      225789999999988 455553        3478999999987 


Q ss_pred             ccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeec
Q 048810          519 ANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVE  570 (582)
Q Consensus       519 ~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~  570 (582)
                      +++++++.       .+++|++|++++|+ ++++|.     ...+|+.|.+.
T Consensus       314 N~L~~l~~-------~~~~L~~L~L~~N~-L~~lp~-----~~~~L~~L~~~  352 (353)
T d1jl5a_         314 NHLAEVPE-------LPQNLKQLHVEYNP-LREFPD-----IPESVEDLRMN  352 (353)
T ss_dssp             SCCSCCCC-------CCTTCCEEECCSSC-CSSCCC-----CCTTCCEEECC
T ss_pred             CcCCcccc-------ccCCCCEEECcCCc-CCCCCc-----cccccCeeECc
Confidence            46777653       35689999999995 888884     34577777764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.1e-17  Score=152.56  Aligned_cols=187  Identities=18%  Similarity=0.126  Sum_probs=157.9

Q ss_pred             ccchhhhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC
Q 048810          194 PNVADLEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS  271 (582)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~  271 (582)
                      +..+..+..+|...+.++++|++++|.+..++..  ..+++|+.|++++|  ....++.  ++.+++|++|++++|.++.
T Consensus        16 ~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N--~l~~l~~--~~~l~~L~~L~Ls~N~l~~   91 (266)
T d1p9ag_          16 NCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA--ELTKLQV--DGTLPVLGTLDLSHNQLQS   91 (266)
T ss_dssp             ECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS--CCCEEEC--CSCCTTCCEEECCSSCCSS
T ss_pred             EccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccc--ccccccc--ccccccccccccccccccc
Confidence            3333445556655667899999999999888754  38999999999998  4455554  4789999999999999999


Q ss_pred             CChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccC
Q 048810          272 LPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISK  348 (582)
Q Consensus       272 lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~  348 (582)
                      .|..+..+++|++|+++++.+..  +..+..+.++++|++++|.+..+|.. +..+++|++|++++ +.+..++++.++.
T Consensus        92 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~-N~l~~~~~~~~~~  170 (266)
T d1p9ag_          92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNG  170 (266)
T ss_dssp             CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTT
T ss_pred             cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccc-ccccccCcccccc
Confidence            99999999999999999999887  57788899999999999999988876 46689999999999 6788888887899


Q ss_pred             CCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccc
Q 048810          349 LSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYA  394 (582)
Q Consensus       349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  394 (582)
                      +++|++|++++|.+..         .+..+..+++|+.|++++|..
T Consensus       171 l~~L~~L~Ls~N~L~~---------lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         171 LENLDTLLLQENSLYT---------IPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CTTCCEEECCSSCCCC---------CCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccceeecccCCCcc---------cChhHCCCCCCCEEEecCCCC
Confidence            9999999999998653         356677899999999998864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.4e-16  Score=148.40  Aligned_cols=206  Identities=21%  Similarity=0.260  Sum_probs=171.3

Q ss_pred             hhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcC-CCCCCCC-Ch
Q 048810          199 LEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFP-GIGSSSL-PS  274 (582)
Q Consensus       199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~-~~~~~~l-p~  274 (582)
                      .++.+|...+..++.|++++|.+..++..  .++++|+.|+++++  ....++...+..+..++.++.. .+.+..+ |.
T Consensus        22 ~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n--~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          22 GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN--VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             CCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccc--cccccccccccccccccccccccccccccccch
Confidence            45566666678899999999999888864  38999999999987  6667777778888999998865 4456665 56


Q ss_pred             hhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCc
Q 048810          275 SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSR  351 (582)
Q Consensus       275 ~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~  351 (582)
                      .+.++++|++|++++|.+..  +..+..+.+|+.+++++|.++.+|.. +..+++|++|++++ +.+..+++..+..+++
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~-N~l~~l~~~~f~~l~~  178 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHS  178 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTT
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhccccc-Ccccccchhhhccccc
Confidence            78999999999999999877  46788899999999999999988754 67889999999999 5788888887899999


Q ss_pred             ccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEecc
Q 048810          352 LEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGE  415 (582)
Q Consensus       352 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~  415 (582)
                      |+++++.+|.+...        .+..+..+++|+.|+++.|.+..++...  .+++|+.++++.+.
T Consensus       179 L~~l~l~~N~l~~i--------~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         179 LDRLLLHQNRVAHV--------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CCEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cchhhhhhcccccc--------ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            99999999987655        4677889999999999999999887654  78889988876544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3e-15  Score=143.12  Aligned_cols=216  Identities=20%  Similarity=0.214  Sum_probs=111.1

Q ss_pred             EEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCC-C
Q 048810          214 ISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGC-R  291 (582)
Q Consensus       214 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~-~  291 (582)
                      +..+++++..+|..+. +.++.|++++|  ....++...|.+++.|++|+++++.+..++ ..+..+..++.+....+ .
T Consensus        16 v~c~~~~L~~iP~~ip-~~~~~L~Ls~N--~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP-AASQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCSSCCTTCC-TTCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCCccCCCCC-CCCCEEECcCC--cCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            3445555555554332 34555665554  344555555555556666666655555433 23344555555544332 3


Q ss_pred             CCC--ccccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccccc
Q 048810          292 LKD--IAKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVE  368 (582)
Q Consensus       292 l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~  368 (582)
                      ++.  +..+.++++|++|++++|.+..++. .++...+|+.+++++ +.++.+|+..+..+++|++|++++|.+...   
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l---  168 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSV---  168 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEE---
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccCccccc---
Confidence            433  3445555555555555555554433 234455555555555 345555544455555555555555543322   


Q ss_pred             CCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHH
Q 048810          369 GGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMR  448 (582)
Q Consensus       369 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~  448 (582)
                           ....+.++++|+.+.+..|.+..++                                             |.++.
T Consensus       169 -----~~~~f~~l~~L~~l~l~~N~l~~i~---------------------------------------------~~~f~  198 (284)
T d1ozna_         169 -----PERAFRGLHSLDRLLLHQNRVAHVH---------------------------------------------PHAFR  198 (284)
T ss_dssp             -----CTTTTTTCTTCCEEECCSSCCCEEC---------------------------------------------TTTTT
T ss_pred             -----chhhhccccccchhhhhhccccccC---------------------------------------------hhHhh
Confidence                 2233445555555555544433221                                             22222


Q ss_pred             HhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecC
Q 048810          449 MLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCS  490 (582)
Q Consensus       449 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  490 (582)
                      . +++|++|+++++......+..+   +.+++|++|++++++
T Consensus       199 ~-l~~L~~L~l~~N~i~~~~~~~~---~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         199 D-LGRLMTLYLFANNLSALPTEAL---APLRALQYLRLNDNP  236 (284)
T ss_dssp             T-CTTCCEEECCSSCCSCCCHHHH---TTCTTCCEEECCSSC
T ss_pred             h-hhhccccccccccccccccccc---ccccccCEEEecCCC
Confidence            2 2677777777766544443343   367788888887764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.7e-15  Score=136.49  Aligned_cols=145  Identities=17%  Similarity=0.224  Sum_probs=73.2

Q ss_pred             ccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEc
Q 048810          208 RKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCL  287 (582)
Q Consensus       208 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L  287 (582)
                      ..+++.+++.++.+..+.....+++|++|+++++  ....+++  ++++++|++|++++|.+..++ .++.+++|++|++
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N--~l~~~~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN--QLTDITP--LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccc--cccCccc--ccCCccccccccccccccccc-ccccccccccccc
Confidence            4566677777766665543334555555555554  2222322  345555555555555554444 2445555555555


Q ss_pred             CCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCc
Q 048810          288 DGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSF  361 (582)
Q Consensus       288 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~  361 (582)
                      ++|.......+..+++|+.|++++|.+..++ .+..+++|++|++.+ +.+..+++  ++++++|++|++++|.
T Consensus       114 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~-n~l~~l~~--l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         114 FNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSS-NQVTDLKP--LANLTTLERLDISSNK  183 (199)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             cccccccccccchhhhhHHhhhhhhhhcccc-ccccccccccccccc-ccccCCcc--ccCCCCCCEEECCCCC
Confidence            5555444444455555555555555554443 244555555555555 23444443  4455555555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=4e-15  Score=135.20  Aligned_cols=165  Identities=22%  Similarity=0.305  Sum_probs=115.0

Q ss_pred             ccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEc
Q 048810          208 RKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCL  287 (582)
Q Consensus       208 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L  287 (582)
                      ...++++.+.++.+..++....+++|+.|+++++  ....+++  ++.+++|++|++++|.++.+| .+..+++|++|++
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n--~i~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN--KLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCc--cccCccc--cccCccccccccccccccccc-ccccccccccccc
Confidence            4578888888888877765446777777777776  3334443  366777777777777777766 4777777777777


Q ss_pred             CCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810          288 DGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV  367 (582)
Q Consensus       288 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~  367 (582)
                      ++|.+..++.+..+++|+.++++++.+...+ .+..+++|+++++++| .+..+++  ++++++|++|++++|.+..   
T Consensus       120 ~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n-~l~~i~~--l~~l~~L~~L~Ls~N~i~~---  192 (210)
T d1h6ta2         120 EHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD---  192 (210)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB---
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccccccccccc-ccccccc--ccCCCCCCEEECCCCCCCC---
Confidence            7777766666777777777777777776554 3666777777777773 5566654  6777777777777775421   


Q ss_pred             cCCCccchhhccCCCCccEEEEEe
Q 048810          368 EGGSNASLVELNGLSKLTTLEIHV  391 (582)
Q Consensus       368 ~~~~~~~~~~l~~l~~L~~L~l~~  391 (582)
                             +..+.++++|+.|++++
T Consensus       193 -------l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 -------LRALAGLKNLDVLELFS  209 (210)
T ss_dssp             -------CGGGTTCTTCSEEEEEE
T ss_pred             -------ChhhcCCCCCCEEEccC
Confidence                   23567777777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=7.9e-15  Score=132.00  Aligned_cols=175  Identities=18%  Similarity=0.233  Sum_probs=141.4

Q ss_pred             ecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCc
Q 048810          216 LPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDI  295 (582)
Q Consensus       216 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~  295 (582)
                      +..+.+.+......+++++.|++.++  ....+..  ++.+++|++|++++|.++.++. ++++++|++|++++|.+...
T Consensus        25 l~~~~~~~~~~~~~l~~l~~L~l~~~--~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~   99 (199)
T d2omxa2          25 LGKTNVTDTVSQTDLDQVTTLQADRL--GIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI   99 (199)
T ss_dssp             TTCSSTTSEECHHHHTTCCEEECTTS--CCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             hCCCCCCCccCHHHhcCCCEEECCCC--CCCCccc--cccCCCcCcCccccccccCccc-ccCCcccccccccccccccc
Confidence            33344433333335788999999987  4444543  4789999999999999998875 99999999999999999887


Q ss_pred             cccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccch
Q 048810          296 AKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASL  375 (582)
Q Consensus       296 ~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  375 (582)
                      +.+..+++|++|+++++....++ .+..+++|+.|++++| .+..++.  +..+++|+.|++.+|.+..          +
T Consensus       100 ~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~~~~L~~L~l~~n~l~~----------l  165 (199)
T d2omxa2         100 TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLNFSSNQVTD----------L  165 (199)
T ss_dssp             GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSSCCCC----------C
T ss_pred             ccccccccccccccccccccccc-ccchhhhhHHhhhhhh-hhccccc--ccccccccccccccccccC----------C
Confidence            77999999999999999887765 4888999999999994 5777764  7899999999999986532          3


Q ss_pred             hhccCCCCccEEEEEecccccCCcccccccccEE
Q 048810          376 VELNGLSKLTTLEIHVRYAEILPQDLVSVELQRY  409 (582)
Q Consensus       376 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L  409 (582)
                      ..++++++|+.|++++|.++.++....+++|+.|
T Consensus       166 ~~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         166 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             ccccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence            4588999999999999999887654477888765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.5e-15  Score=136.52  Aligned_cols=165  Identities=24%  Similarity=0.289  Sum_probs=138.9

Q ss_pred             CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEE
Q 048810          229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLS  308 (582)
Q Consensus       229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~  308 (582)
                      .+.+|+.|++.++  ....++.  +..+++|++|++++|.++.++. ++.+++|++|++++|+++.++.+..+++|+.|+
T Consensus        44 ~L~~L~~L~l~~~--~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNS--DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTS--CCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEE
T ss_pred             HhcCccEEECcCC--CCCCchh--HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccccccccccccccc
Confidence            4668899999887  4444543  4789999999999999999884 789999999999999999977899999999999


Q ss_pred             eeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810          309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE  388 (582)
Q Consensus       309 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  388 (582)
                      +++|.+..++ .+..+++|+.+++++ +.+...+.  ++.+++|+++++++|.+..          +..+.++++|+.|+
T Consensus       119 l~~~~~~~~~-~l~~l~~l~~l~~~~-n~l~~~~~--~~~l~~L~~l~l~~n~l~~----------i~~l~~l~~L~~L~  184 (210)
T d1h6ta2         119 LEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISD----------IVPLAGLTKLQNLY  184 (210)
T ss_dssp             CTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCC----------CGGGTTCTTCCEEE
T ss_pred             cccccccccc-ccccccccccccccc-cccccccc--ccccccccccccccccccc----------cccccCCCCCCEEE
Confidence            9999888776 488899999999988 45666654  6889999999999987532          34588999999999


Q ss_pred             EEecccccCCcccccccccEEEEE
Q 048810          389 IHVRYAEILPQDLVSVELQRYKMF  412 (582)
Q Consensus       389 l~~~~~~~~~~~~~~~~L~~L~l~  412 (582)
                      +++|.++.++....+++|+.|+++
T Consensus       185 Ls~N~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         185 LSKNHISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             CCCCCCCCChhhcCCCCCCEEEcc
Confidence            999999988754488999999885

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.6e-14  Score=133.10  Aligned_cols=189  Identities=16%  Similarity=0.186  Sum_probs=157.2

Q ss_pred             HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810          205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT  284 (582)
Q Consensus       205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~  284 (582)
                      .....+++.+++.++.+..++....+++|+.|+++++  ....+.+  +..+++|++++++++.++.++ .+..+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n--~i~~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN--QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKT  111 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred             HHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCc--eeecccc--ccccccccccccccccccccc-cccccccccc
Confidence            3456789999999999998876568999999999987  3444443  689999999999999998876 5889999999


Q ss_pred             EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810          285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW  364 (582)
Q Consensus       285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~  364 (582)
                      ++++++.......+.....++.+.++++.+...+. +..+++|++|++.+| .+...+.  ++++++|+.|++++|.+..
T Consensus       112 l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccchhccccchhhhhchhhhhchhhh-hcccccccccccccc-ccccchh--hcccccceecccCCCccCC
Confidence            99999998887778889999999999988876554 678899999999984 5555554  7899999999999986532


Q ss_pred             ccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEE
Q 048810          365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMF  412 (582)
Q Consensus       365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  412 (582)
                                +..++++++|+.|++++|+++.++..-.+++|+.|+++
T Consensus       188 ----------l~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         188 ----------ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             ----------CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             ----------ChhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence                      34588899999999999999988764488899999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.59  E-value=2.3e-14  Score=141.23  Aligned_cols=290  Identities=18%  Similarity=0.112  Sum_probs=162.5

Q ss_pred             CccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeC
Q 048810          232 RLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRD  311 (582)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~  311 (582)
                      +++.|+++++  ....+|+    .+++|++|++++|.++.+|..+   .+|+.|++.+|+++..+.+.  +.|++|++++
T Consensus        39 ~l~~LdLs~~--~L~~lp~----~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNL--GLSSLPE----LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLP--PLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTS--CCSCCCS----CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSCC--TTCCEEECCS
T ss_pred             CCCEEEeCCC--CCCCCCC----CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhhc--cccccccccc
Confidence            5677777766  3445653    2467788888888887777643   45777777777766633221  3577888888


Q ss_pred             CCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEe
Q 048810          312 SDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHV  391 (582)
Q Consensus       312 ~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  391 (582)
                      |.+..+|. ++.+++|++|+++++ .+...+.    ....+..+.+..+...          ....+..++.++.+.+..
T Consensus       108 n~l~~lp~-~~~l~~L~~L~l~~~-~~~~~~~----~~~~l~~l~~~~~~~~----------~~~~l~~l~~l~~L~l~~  171 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKIIDVDNN-SLKKLPD----LPPSLEFIAAGNNQLE----------ELPELQNLPFLTAIYADN  171 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS----------SCCCCTTCTTCCEEECCS
T ss_pred             cccccccc-hhhhccceeeccccc-ccccccc----ccccccchhhcccccc----------ccccccccccceeccccc
Confidence            87777774 567778888887773 3444443    2345555555443321          234466778888888887


Q ss_pred             cccccCCcccccccccEEEEEeccc-cccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccc
Q 048810          392 RYAEILPQDLVSVELQRYKMFIGEA-RGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVH  470 (582)
Q Consensus       392 ~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~  470 (582)
                      +.....+...  ...+.+....... ........+.++.+.+..+.....   +    ....++..+.+.++.... .+.
T Consensus       172 n~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~---~----~~~~~l~~~~~~~~~~~~-~~~  241 (353)
T d1jl5a_         172 NSLKKLPDLP--LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL---P----DLPPSLEALNVRDNYLTD-LPE  241 (353)
T ss_dssp             SCCSSCCCCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC---C----SCCTTCCEEECCSSCCSC-CCC
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccc---c----cccccccccccccccccc-ccc
Confidence            7766554432  1112222211111 011112233344444443322111   1    112455555555443221 111


Q ss_pred             cccCCCCCCCCcEEEEeecC--Cceeeecccc---------cccCCCCcccccccccccccccccccccccCcccCCCcc
Q 048810          471 ELDDGEGFPRLKHLYVESCS--EILHIVGSVR---------RVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLR  539 (582)
Q Consensus       471 ~~~~~~~l~~L~~L~l~~~~--~l~~~~~~~~---------~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~  539 (582)
                            ..+++....+..+.  .+..++....         ......+|+|++|++++| +++.+|.       .+++|+
T Consensus       242 ------~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~-------~~~~L~  307 (353)
T d1jl5a_         242 ------LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA-------LPPRLE  307 (353)
T ss_dssp             ------CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC-------CCTTCC
T ss_pred             ------ccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCC-ccCcccc-------ccCCCC
Confidence                  22333333332211  1111110000         012245789999999985 6777653       478999


Q ss_pred             EEEEecccCcccccChhHHhhhhhcceeeeccCcchHHHh
Q 048810          540 IIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMII  579 (582)
Q Consensus       540 ~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~  579 (582)
                      .|++++| +++++|.     .+++|++|++++|+ |++++
T Consensus       308 ~L~L~~N-~L~~l~~-----~~~~L~~L~L~~N~-L~~lp  340 (353)
T d1jl5a_         308 RLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFP  340 (353)
T ss_dssp             EEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCC
T ss_pred             EEECCCC-cCCcccc-----ccCCCCEEECcCCc-CCCCC
Confidence            9999988 7999884     36789999999997 77664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=3.4e-14  Score=130.77  Aligned_cols=128  Identities=24%  Similarity=0.388  Sum_probs=76.5

Q ss_pred             cCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEccc
Q 048810          254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS  333 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  333 (582)
                      +.+.+|+.|++.+|.++.++ .+..+++|++|++++|.+..+..+..+++|+++++++|.++.++ .+..+++|++++++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred             HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccccc-cccccccccccccc
Confidence            34556677777777766663 46667777777777776666555666777777777766666655 35666677777766


Q ss_pred             ccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccccc
Q 048810          334 NCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEI  396 (582)
Q Consensus       334 ~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  396 (582)
                      +|. ...++.  +...+.++.+.++.+....          ...+...++|+.|.+.++.+..
T Consensus       116 ~~~-~~~~~~--~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~L~~L~l~~n~~~~  165 (227)
T d1h6ua2         116 STQ-ITDVTP--LAGLSNLQVLYLDLNQITN----------ISPLAGLTNLQYLSIGNAQVSD  165 (227)
T ss_dssp             TSC-CCCCGG--GTTCTTCCEEECCSSCCCC----------CGGGGGCTTCCEEECCSSCCCC
T ss_pred             ccc-ccccch--hccccchhhhhchhhhhch----------hhhhcccccccccccccccccc
Confidence            643 333332  4556666666665554321          2234455666666666555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.4e-15  Score=140.49  Aligned_cols=103  Identities=20%  Similarity=0.237  Sum_probs=60.5

Q ss_pred             ccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--c-cccCCCCCccEEEeeCCCCC-ccchhhcCCCCCCEEcccc
Q 048810          259 LKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--I-AKVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQLLDLSN  334 (582)
Q Consensus       259 Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~-~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~  334 (582)
                      +..+.++...+...........+|++|++++|.+..  + ..+..+++|++|++++|.+. ..+..++++++|++|++++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            445555555443322333445567777777776654  2 34566777777777777665 4455566777777777777


Q ss_pred             cccccccCc-ccccCCCcccEEEcCCCc
Q 048810          335 CWTLEVIAP-NVISKLSRLEELYMGNSF  361 (582)
Q Consensus       335 ~~~l~~lp~-~~l~~l~~L~~L~l~~~~  361 (582)
                      |..++...- .....+++|++|++++|.
T Consensus       105 c~~itd~~l~~l~~~~~~L~~L~ls~c~  132 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLDELNLSWCF  132 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             cccccccccchhhHHHHhcccccccccc
Confidence            766553211 112356677777776653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7.7e-14  Score=129.77  Aligned_cols=100  Identities=19%  Similarity=0.266  Sum_probs=55.2

Q ss_pred             cEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCc-cch-hhcCCCCCCEEccccc
Q 048810          260 KVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQ-LPL-EIGQLRRLQLLDLSNC  335 (582)
Q Consensus       260 r~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~-lp~-~i~~l~~L~~L~l~~~  335 (582)
                      ++++.++..++.+|..+.  .++++|++++|.++. + ..+.++++|++|++++|.+.. +|. .+..+++++++.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            455556666666665442  356666666666655 2 235566666666666665543 222 2455566666665555


Q ss_pred             ccccccCcccccCCCcccEEEcCCCc
Q 048810          336 WTLEVIAPNVISKLSRLEELYMGNSF  361 (582)
Q Consensus       336 ~~l~~lp~~~l~~l~~L~~L~l~~~~  361 (582)
                      +.+..+++..+..+++|+++++.++.
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             ccccccccccccccccccccccchhh
Confidence            55555555445555666666555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=2.1e-13  Score=111.71  Aligned_cols=101  Identities=28%  Similarity=0.294  Sum_probs=73.7

Q ss_pred             cEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccc
Q 048810          260 KVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTL  338 (582)
Q Consensus       260 r~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l  338 (582)
                      |+|++++|.++.+| .++.+.+|++|++++|+++. |+.++.+++|++|++++|.++.+|. ++.+++|++|++++ +.+
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~-N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCN-NRL   77 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-SCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCC-Ccc
Confidence            67788888887776 37777888888888887777 5667777888888888887777764 77777888888877 456


Q ss_pred             cccCc-ccccCCCcccEEEcCCCccc
Q 048810          339 EVIAP-NVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       339 ~~lp~-~~l~~l~~L~~L~l~~~~~~  363 (582)
                      ..++. ..++.+++|+.|++++|.+.
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            65553 23567777777777777643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.4e-14  Score=120.13  Aligned_cols=130  Identities=14%  Similarity=0.168  Sum_probs=96.8

Q ss_pred             hcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhh-cCCCCCCEEc
Q 048810          253 FEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLD  331 (582)
Q Consensus       253 ~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~  331 (582)
                      |.++..+|.|+|++|.++.+|..+..+.+|++|++++|.++..+.+..+++|++|++++|+++.+|..+ ..+++|++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            356778899999999998888766788899999999998888777888889999999999888887664 5688899999


Q ss_pred             ccccccccccCc-ccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810          332 LSNCWTLEVIAP-NVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE  388 (582)
Q Consensus       332 l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  388 (582)
                      +++ +.+..++. ..+..+++|++|++++|.+...     .......+..+++|+.|+
T Consensus        94 L~~-N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~-----~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNK-----KHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-----TTHHHHHHHHCTTCSEET
T ss_pred             ecc-ccccccccccccccccccchhhcCCCccccc-----cchHHHHHHHCCCcCeeC
Confidence            888 45666553 2367788888888888765332     000122355667777665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=2.6e-13  Score=111.19  Aligned_cols=117  Identities=22%  Similarity=0.259  Sum_probs=99.6

Q ss_pred             cEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcc
Q 048810          283 QTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFK  362 (582)
Q Consensus       283 ~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~  362 (582)
                      |+|++++|+++.++.++.+++|++|++++|.++++|..++.+++|++|++++ +.++.+|.  ++.+++|++|++++|.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~--~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVDG--VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhccccccccc-ccccccCc--cccccccCeEECCCCcc
Confidence            6899999999997779999999999999999999999999999999999999 67888875  89999999999999976


Q ss_pred             ccccccCCCccchhhccCCCCccEEEEEecccccCCcc---c--ccccccEE
Q 048810          363 RWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD---L--VSVELQRY  409 (582)
Q Consensus       363 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~--~~~~L~~L  409 (582)
                      ...       ..+..+..+++|+.|++++|.+...+..   +  .+++|+.+
T Consensus        78 ~~~-------~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQS-------AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSS-------STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCC-------CCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            533       1245688899999999999988765433   2  56777655

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.3e-12  Score=121.26  Aligned_cols=120  Identities=18%  Similarity=0.204  Sum_probs=91.6

Q ss_pred             ccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCC
Q 048810          282 LQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN  359 (582)
Q Consensus       282 L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~  359 (582)
                      .++++.++..++. |..+.  +++++|++++|.++.+|.. +.++++|++|++++|.....++...+..+++++++.+..
T Consensus        10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4778888888888 65553  5899999999999999875 688999999999997666667776688899999998765


Q ss_pred             Cc-cccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEE
Q 048810          360 SF-KRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKM  411 (582)
Q Consensus       360 ~~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  411 (582)
                      +. ....        ....+.++++|+.++++.+.+...+....+.+++.+..
T Consensus        88 ~n~l~~~--------~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~  132 (242)
T d1xwdc1          88 ANNLLYI--------NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL  132 (242)
T ss_dssp             CTTCCEE--------CTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEE
T ss_pred             ccccccc--------ccccccccccccccccchhhhccccccccccccccccc
Confidence            43 2222        34567889999999999988877665545555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.3e-14  Score=133.99  Aligned_cols=251  Identities=19%  Similarity=0.166  Sum_probs=151.6

Q ss_pred             cEEEcCCCCCCCCChhhhccc--CccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCC--ccchhhcCCCCCCEEcccc
Q 048810          260 KVLQFPGIGSSSLPSSLDRLI--NLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIE--QLPLEIGQLRRLQLLDLSN  334 (582)
Q Consensus       260 r~L~l~~~~~~~lp~~i~~L~--~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~  334 (582)
                      +.||++++.+.  |+.++.+.  .+..+.+..+.... ........+|++|++++|.+.  .++.-+..+++|++|++++
T Consensus         3 ~~lDLs~~~l~--~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCC--chHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            57888887653  34444333  34566666655544 344556678899999888765  3555577888888888888


Q ss_pred             cccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecc-cccCCcccccccccEEEEEe
Q 048810          335 CWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRY-AEILPQDLVSVELQRYKMFI  413 (582)
Q Consensus       335 ~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~  413 (582)
                      |..-...+.. ++++++|++|++++|.....      .....-...+++|++|+++++. +..                 
T Consensus        81 ~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd------~~l~~l~~~~~~L~~L~ls~c~~~~~-----------------  136 (284)
T d2astb2          81 LRLSDPIVNT-LAKNSNLVRLNLSGCSGFSE------FALQTLLSSCSRLDELNLSWCFDFTE-----------------  136 (284)
T ss_dssp             CBCCHHHHHH-HTTCTTCSEEECTTCBSCCH------HHHHHHHHHCTTCCEEECCCCTTCCH-----------------
T ss_pred             cCCCcHHHHH-HhcCCCCcCccccccccccc------cccchhhHHHHhcccccccccccccc-----------------
Confidence            7433333333 67788888888887643211      0111123445666666665431 100                 


Q ss_pred             ccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccC-cccc-cccccCCCCCCCCcEEEEeecCC
Q 048810          414 GEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEG-VPSV-VHELDDGEGFPRLKHLYVESCSE  491 (582)
Q Consensus       414 ~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~-~~~~-~~~~~~~~~l~~L~~L~l~~~~~  491 (582)
                                            ..+     ...+....++|+.|++.++.. +++. ...+  ...+|+|++|++++|..
T Consensus       137 ----------------------~~~-----~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l--~~~~~~L~~L~L~~~~~  187 (284)
T d2astb2         137 ----------------------KHV-----QVAVAHVSETITQLNLSGYRKNLQKSDLSTL--VRRCPNLVHLDLSDSVM  187 (284)
T ss_dssp             ----------------------HHH-----HHHHHHSCTTCCEEECCSCGGGSCHHHHHHH--HHHCTTCSEEECTTCTT
T ss_pred             ----------------------ccc-----hhhhcccccccchhhhccccccccccccccc--ccccccccccccccccC
Confidence                                  000     112233347899999998642 3321 1111  23689999999999976


Q ss_pred             ceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeecc
Q 048810          492 ILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEE  571 (582)
Q Consensus       492 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~  571 (582)
                      ++.-.    ......+|+|++|++++|.++++-.   +..++.+|+|+.|++++|-.-..+.  ...+.+|+|+   + +
T Consensus       188 itd~~----~~~l~~~~~L~~L~L~~C~~i~~~~---l~~L~~~~~L~~L~l~~~~~d~~l~--~l~~~lp~L~---i-~  254 (284)
T d2astb2         188 LKNDC----FQEFFQLNYLQHLSLSRCYDIIPET---LLELGEIPTLKTLQVFGIVPDGTLQ--LLKEALPHLQ---I-N  254 (284)
T ss_dssp             CCGGG----GGGGGGCTTCCEEECTTCTTCCGGG---GGGGGGCTTCCEEECTTSSCTTCHH--HHHHHSTTSE---E-S
T ss_pred             CCchh----hhhhcccCcCCEEECCCCCCCChHH---HHHHhcCCCCCEEeeeCCCCHHHHH--HHHHhCcccc---c-c
Confidence            65321    2245568999999999998876543   3235679999999999983222222  2334566654   4 4


Q ss_pred             CcchHHH
Q 048810          572 CDELKMI  578 (582)
Q Consensus       572 C~~L~~i  578 (582)
                      |..++.+
T Consensus       255 ~~~ls~~  261 (284)
T d2astb2         255 CSHFTTI  261 (284)
T ss_dssp             CCCSCCT
T ss_pred             CccCCCC
Confidence            6655543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=2.4e-12  Score=114.67  Aligned_cols=104  Identities=16%  Similarity=0.198  Sum_probs=52.2

Q ss_pred             CCccEEEcCCCCCCC-C-ChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEc
Q 048810          257 EGLKVLQFPGIGSSS-L-PSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLD  331 (582)
Q Consensus       257 ~~Lr~L~l~~~~~~~-l-p~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~  331 (582)
                      .++++|+|++|.++. + +..+..+++|++|++++|.+..  +..+..+++|++|++++|+++.+|+. +.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            345555555555543 2 2334555555555555555544  34445555555555555555554433 34455555555


Q ss_pred             ccccccccccCcccccCCCcccEEEcCCCc
Q 048810          332 LSNCWTLEVIAPNVISKLSRLEELYMGNSF  361 (582)
Q Consensus       332 l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~  361 (582)
                      +++ +.++.+|++.|..+++|++|++++|.
T Consensus       109 L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         109 LYD-NQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCS-SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cCC-ccccccCHHHhcCCcccccccccccc
Confidence            555 34555554444455555555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.3e-12  Score=112.49  Aligned_cols=126  Identities=21%  Similarity=0.201  Sum_probs=105.4

Q ss_pred             hhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccE
Q 048810          276 LDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEE  354 (582)
Q Consensus       276 i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~  354 (582)
                      +.+..+||+|+|++|+++. +..+..+++|++|++++|.+++++ .+..+++|++|++++ +.+..++++.+..+++|++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~-N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccc-ccccCCCcccccccccccc
Confidence            5677789999999999999 444577999999999999999986 589999999999999 5688888876678999999


Q ss_pred             EEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcc----c-ccccccEEE
Q 048810          355 LYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD----L-VSVELQRYK  410 (582)
Q Consensus       355 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~-~~~~L~~L~  410 (582)
                      |++++|.+...       ..+..+..+++|+.|++++|.+...+..    + .+++|+.|+
T Consensus        92 L~L~~N~i~~~-------~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVEL-------GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCG-------GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceecccccccc-------ccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99999976432       1345688999999999999999887753    2 677887775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=3.5e-12  Score=113.58  Aligned_cols=125  Identities=17%  Similarity=0.233  Sum_probs=85.0

Q ss_pred             cEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEccccc
Q 048810          260 KVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNC  335 (582)
Q Consensus       260 r~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~  335 (582)
                      ++++.+++.++.+|..+.  .++++|+|++|+++.   ...+..+++|++|++++|.+..++. .+..+++|++|++++ 
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~-   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc-
Confidence            456777777777776553  467777777777754   3556677777777777777775543 456677777777777 


Q ss_pred             ccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810          336 WTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE  395 (582)
Q Consensus       336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  395 (582)
                      +++..+|++.|.++++|++|++++|.+...        ....+..+++|++|++++|.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i--------~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCV--------MPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEE--------CTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCcccccc--------CHHHhcCCcccccccccccccc
Confidence            567777766677777777777777766544        3344666777777777776654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=1.8e-13  Score=122.34  Aligned_cols=107  Identities=22%  Similarity=0.257  Sum_probs=68.8

Q ss_pred             hcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEc
Q 048810          253 FEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLD  331 (582)
Q Consensus       253 ~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  331 (582)
                      ++.+++|++|++++|.++.++ .++.+++|++|++++|.++. +.....+.+|++|++++|.++.++ .+..+++|++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEE
T ss_pred             HhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            466777777777777777665 46777777777777777666 333334456777777777766664 366667777777


Q ss_pred             ccccccccccCc-ccccCCCcccEEEcCCCcc
Q 048810          332 LSNCWTLEVIAP-NVISKLSRLEELYMGNSFK  362 (582)
Q Consensus       332 l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~  362 (582)
                      +++ +.++.++. ..++.+++|+.|++++|.+
T Consensus       122 L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         122 MSN-NKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ESE-EECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccc-chhccccccccccCCCccceeecCCCcc
Confidence            776 34555442 2256667777777776654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=4.3e-13  Score=119.83  Aligned_cols=102  Identities=19%  Similarity=0.206  Sum_probs=49.4

Q ss_pred             CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEE
Q 048810          229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLS  308 (582)
Q Consensus       229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~  308 (582)
                      .+++|+.|+++++  ....++.  +..+++|++|++++|.++.+|.....+.+|++|++++|+++.++.+..+++|++|+
T Consensus        46 ~L~~L~~L~Ls~n--~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~  121 (198)
T d1m9la_          46 TLKACKHLALSTN--NIEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY  121 (198)
T ss_dssp             HTTTCCEEECSEE--EESCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEE
T ss_pred             cccccceeECccc--CCCCccc--ccCCccccChhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445555555544  2333321  34455555555555555555443344444555555555555544444555555555


Q ss_pred             eeCCCCCccch--hhcCCCCCCEEcccc
Q 048810          309 FRDSDIEQLPL--EIGQLRRLQLLDLSN  334 (582)
Q Consensus       309 l~~~~l~~lp~--~i~~l~~L~~L~l~~  334 (582)
                      +++|.++.++.  .+..+++|++|++++
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             cccchhccccccccccCCCccceeecCC
Confidence            55555554432  344555555555555

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=7.3e-12  Score=127.55  Aligned_cols=106  Identities=15%  Similarity=0.144  Sum_probs=67.2

Q ss_pred             CcEEEEecCCCCcCC--CC-CCCCCCccEEEeeccCcccc--ccChHHhcCCCCccEEEcCCCCCCC-----CChhhh-c
Q 048810          210 DPIAISLPYRGDQVL--PQ-RMRCPRLGLFLLHTIGLCSI--QVSDHFFEGMEGLKVLQFPGIGSSS-----LPSSLD-R  278 (582)
Q Consensus       210 ~~~~l~l~~~~~~~l--~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~-~  278 (582)
                      +++.|+++.+++...  .. ...++++++|.+.+++-...  ......+..+++|+.|+|++|.++.     +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            577888888888542  11 11567888888887721110  1112234678888888888887753     122221 1


Q ss_pred             ccCccEEEcCCCCCCC------ccccCCCCCccEEEeeCCCCC
Q 048810          279 LINLQTLCLDGCRLKD------IAKVGQLKKLEVLSFRDSDIE  315 (582)
Q Consensus       279 L~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~l~~~~l~  315 (582)
                      ..+|++|++++|+++.      +..+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            2468888888888765      245677888888888888765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3e-09  Score=90.27  Aligned_cols=104  Identities=21%  Similarity=0.208  Sum_probs=74.4

Q ss_pred             CccEEEcCCCCCCCCChhhhcccCccEEEcCCCC-CCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEccc
Q 048810          258 GLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCR-LKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLS  333 (582)
Q Consensus       258 ~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~-l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~  333 (582)
                      ....++.+++.+.+.|..+..+++|+.|++.+++ ++.  +..|..+++|+.|++++|+|+.+++. +..+++|++|+++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            3445677777777777777777888888887653 666  45677788888888888888877543 6778888888888


Q ss_pred             ccccccccCcccccCCCcccEEEcCCCccc
Q 048810          334 NCWTLEVIAPNVISKLSRLEELYMGNSFKR  363 (582)
Q Consensus       334 ~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~  363 (582)
                      + +.++.+|.+.+. ..+|++|++++|.+.
T Consensus        89 ~-N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 F-NALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             S-SCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             C-CCCcccChhhhc-cccccccccCCCccc
Confidence            7 567777776443 336778888777653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.2e-08  Score=86.55  Aligned_cols=81  Identities=25%  Similarity=0.165  Sum_probs=44.7

Q ss_pred             cCCCCccEEEcCCC-CCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCE
Q 048810          254 EGMEGLKVLQFPGI-GSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQL  329 (582)
Q Consensus       254 ~~l~~Lr~L~l~~~-~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~  329 (582)
                      ..+++|+.|+++++ .++.++ ..+.++++|+.|++++|+++.  +..+..+++|++|+|++|+++.+|.++....+|++
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~  107 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE  107 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccc
Confidence            44555555555443 255443 235555556666666555555  34455566666666666666666555544445666


Q ss_pred             Ecccc
Q 048810          330 LDLSN  334 (582)
Q Consensus       330 L~l~~  334 (582)
                      |++++
T Consensus       108 L~L~~  112 (156)
T d2ifga3         108 LVLSG  112 (156)
T ss_dssp             EECCS
T ss_pred             cccCC
Confidence            66655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.65  E-value=2.9e-09  Score=103.66  Aligned_cols=184  Identities=14%  Similarity=0.072  Sum_probs=99.8

Q ss_pred             hccCcEEEEecCCCCcC-----CCCCC-CCCCccEEEeeccCccc--ccc------ChHHhcCCCCccEEEcCCCCCCC-
Q 048810          207 IRKDPIAISLPYRGDQV-----LPQRM-RCPRLGLFLLHTIGLCS--IQV------SDHFFEGMEGLKVLQFPGIGSSS-  271 (582)
Q Consensus       207 ~~~~~~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~--~~~------~~~~~~~l~~Lr~L~l~~~~~~~-  271 (582)
                      ....++.+++++|.+..     +.... ..++|+.+.+.++....  ...      ....+..+++|+.|++++|.++. 
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            34567778887776522     22222 56677777776541110  000      11223456777777777777654 


Q ss_pred             ----CChhhhcccCccEEEcCCCCCCC--cc-------------ccCCCCCccEEEeeCCCCC-----ccchhhcCCCCC
Q 048810          272 ----LPSSLDRLINLQTLCLDGCRLKD--IA-------------KVGQLKKLEVLSFRDSDIE-----QLPLEIGQLRRL  327 (582)
Q Consensus       272 ----lp~~i~~L~~L~~L~L~~~~l~~--~~-------------~~~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L  327 (582)
                          +...+...++|++|++++|.+..  ..             .....+.|+.++++++.+.     .+...+...++|
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L  188 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  188 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhh
Confidence                33445566777777777776532  10             1234556777777776654     233445566677


Q ss_pred             CEEcccccccccc-----cCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810          328 QLLDLSNCWTLEV-----IAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE  395 (582)
Q Consensus       328 ~~L~l~~~~~l~~-----lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  395 (582)
                      ++|++++|. +..     .....+...++|++|++++|.+...    ........+...++|++|++++|.+.
T Consensus       189 ~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~----g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         189 HTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----GSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             CEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH----HHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             ccccccccc-ccccccccchhhhhcchhhhccccccccccccc----ccccccccccccccchhhhhhcCccC
Confidence            777777643 322     1111245566777777776654322    01112334556666777766665543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.7e-09  Score=109.65  Aligned_cols=104  Identities=19%  Similarity=0.170  Sum_probs=76.7

Q ss_pred             CCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCCCCC--ccc----cC
Q 048810          231 PRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCRLKD--IAK----VG  299 (582)
Q Consensus       231 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--~~~----~~  299 (582)
                      .+|+.|+++.+ .....-...++..++++|+|+|++|.++.     ++..+..+++|++|+|++|+++.  ...    +.
T Consensus         2 ~~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            36889999887 22222223455778999999999998863     45667788999999999998864  222    22


Q ss_pred             -CCCCccEEEeeCCCCCc-----cchhhcCCCCCCEEccccc
Q 048810          300 -QLKKLEVLSFRDSDIEQ-----LPLEIGQLRRLQLLDLSNC  335 (582)
Q Consensus       300 -~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~  335 (582)
                       ...+|++|++++|.++.     ++..+..+++|++|++++|
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence             23579999999998863     4566788899999999885

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.32  E-value=1.1e-07  Score=92.29  Aligned_cols=80  Identities=19%  Similarity=0.292  Sum_probs=35.0

Q ss_pred             cCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCCc------cchhhcCCCCCCEEcccccccccc-----cC
Q 048810          280 INLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIEQ------LPLEIGQLRRLQLLDLSNCWTLEV-----IA  342 (582)
Q Consensus       280 ~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~~------lp~~i~~l~~L~~L~l~~~~~l~~-----lp  342 (582)
                      ..|+.+.++++.+..  .    ..+....+|+.|++++|.+..      +...+..+++|++|++++| .++.     +.
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~  236 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALA  236 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccc-ccccccccccc
Confidence            345555555554433  1    223344455555555554441      1222344455555555543 2221     11


Q ss_pred             cccccCCCcccEEEcCCCc
Q 048810          343 PNVISKLSRLEELYMGNSF  361 (582)
Q Consensus       343 ~~~l~~l~~L~~L~l~~~~  361 (582)
                      . .+...++|++|++++|.
T Consensus       237 ~-~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         237 I-ALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             H-HGGGCTTCCEEECTTCC
T ss_pred             c-cccccccchhhhhhcCc
Confidence            1 13445555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2e-06  Score=72.89  Aligned_cols=82  Identities=23%  Similarity=0.157  Sum_probs=57.9

Q ss_pred             hHHhcCCCCccEEEcCCCCCCCCC---hhhhcccCccEEEcCCCCCCCccc--cCCCCCccEEEeeCCCCCccch-----
Q 048810          250 DHFFEGMEGLKVLQFPGIGSSSLP---SSLDRLINLQTLCLDGCRLKDIAK--VGQLKKLEVLSFRDSDIEQLPL-----  319 (582)
Q Consensus       250 ~~~~~~l~~Lr~L~l~~~~~~~lp---~~i~~L~~L~~L~L~~~~l~~~~~--~~~l~~L~~L~l~~~~l~~lp~-----  319 (582)
                      ..++..++.|++|++++|.++.++   ..+..+++|++|++++|.++.++.  .....+|+.|++++|.+.....     
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            445567889999999999887754   456778888888888888888332  2233468888888887764321     


Q ss_pred             ---hhcCCCCCCEEc
Q 048810          320 ---EIGQLRRLQLLD  331 (582)
Q Consensus       320 ---~i~~l~~L~~L~  331 (582)
                         -+..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence               245677777776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=1.5e-06  Score=73.65  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=49.4

Q ss_pred             hhhcccCccEEEcCCCCCCCc----cccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCc------
Q 048810          275 SLDRLINLQTLCLDGCRLKDI----AKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAP------  343 (582)
Q Consensus       275 ~i~~L~~L~~L~L~~~~l~~~----~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~------  343 (582)
                      ....+++|++|++++|+++..    ..+..+++|++|++++|.++.++. ......+|+.|++.+|+ +.....      
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np-l~~~~~~~~~y~  138 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS-LSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST-TSSSSSSHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC-cCcCcccchhHH
Confidence            345677788888888877762    335567778888888877777665 12233467777777743 322211      


Q ss_pred             -ccccCCCcccEEE
Q 048810          344 -NVISKLSRLEELY  356 (582)
Q Consensus       344 -~~l~~l~~L~~L~  356 (582)
                       .++..+++|+.|+
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence             1244566666665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.00  E-value=0.00032  Score=59.10  Aligned_cols=80  Identities=14%  Similarity=0.125  Sum_probs=36.0

Q ss_pred             CCCCccEEEcCCC-CCCC-----CChhhhcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCC-----cc
Q 048810          255 GMEGLKVLQFPGI-GSSS-----LPSSLDRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIE-----QL  317 (582)
Q Consensus       255 ~l~~Lr~L~l~~~-~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~-----~l  317 (582)
                      +.+.|+.|+|+++ .++.     +-..+...++|++|++++|.+..  .    ..+...+.|++|++++|.+.     .+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3455555555543 2321     22233344455555555555443  1    22333445555555555444     12


Q ss_pred             chhhcCCCCCCEEcccc
Q 048810          318 PLEIGQLRRLQLLDLSN  334 (582)
Q Consensus       318 p~~i~~l~~L~~L~l~~  334 (582)
                      -..+...++|++|++++
T Consensus        93 ~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             HHHTTTTCCCSEEECCC
T ss_pred             HHHHHhCCcCCEEECCC
Confidence            22344444555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.93  E-value=0.00037  Score=58.67  Aligned_cols=82  Identities=11%  Similarity=0.076  Sum_probs=62.0

Q ss_pred             hcCCCCccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCCcc----
Q 048810          253 FEGMEGLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIEQL----  317 (582)
Q Consensus       253 ~~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~~l----  317 (582)
                      +...+.|+.|++++|.++.     +...+...+.|++|++++|.+..  .    ..+..-+.|++|+++++++..+    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            4677889999999998753     44566777899999999999876  2    4577778899999998865533    


Q ss_pred             ----chhhcCCCCCCEEcccc
Q 048810          318 ----PLEIGQLRRLQLLDLSN  334 (582)
Q Consensus       318 ----p~~i~~l~~L~~L~l~~  334 (582)
                          ...+..-++|+.|+++.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHhCCCccEeeCcC
Confidence                33445567777777765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.74  E-value=0.00046  Score=57.97  Aligned_cols=82  Identities=15%  Similarity=0.141  Sum_probs=45.5

Q ss_pred             HhcCCCCccEEEcCCC-CCCC-----CChhhhcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCC----
Q 048810          252 FFEGMEGLKVLQFPGI-GSSS-----LPSSLDRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIE----  315 (582)
Q Consensus       252 ~~~~l~~Lr~L~l~~~-~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~----  315 (582)
                      +..+.+.|+.|+++++ .++.     +-..+...++|+.|++++|.+..  .    ..+...++++.+++++|.+.    
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            3355667777777663 3432     23344456667777777776654  1    33445566666666666554    


Q ss_pred             -ccchhhcCCCCCCEEccc
Q 048810          316 -QLPLEIGQLRRLQLLDLS  333 (582)
Q Consensus       316 -~lp~~i~~l~~L~~L~l~  333 (582)
                       .+-..+...++|+.+++.
T Consensus        92 ~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          92 LALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECC
T ss_pred             HHHHHHHHhCccccEEeec
Confidence             233444555666655444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.10  E-value=0.0031  Score=52.65  Aligned_cols=82  Identities=12%  Similarity=0.113  Sum_probs=61.7

Q ss_pred             hcCCCCccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCCCCC------ccccCCCCCccEEEee--CCCCC----
Q 048810          253 FEGMEGLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCRLKD------IAKVGQLKKLEVLSFR--DSDIE----  315 (582)
Q Consensus       253 ~~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~l~--~~~l~----  315 (582)
                      +...++|+.|++++|.++.     +...+....+++.+++++|.+..      ...+...++|+.+++.  ++.+.    
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            4678999999999998754     44556778899999999998876      2667778889987775  44554    


Q ss_pred             -ccchhhcCCCCCCEEcccc
Q 048810          316 -QLPLEIGQLRRLQLLDLSN  334 (582)
Q Consensus       316 -~lp~~i~~l~~L~~L~l~~  334 (582)
                       .+...+.+.++|++|++..
T Consensus       122 ~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHhCCCcCEEeCcC
Confidence             3555566778888888765