Citrus Sinensis ID: 048811

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MRRSTGSVPRIRRGRVLKKVPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVLL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHcccHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccHHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEEEEccHHHHHHHHHccccccEEEEccEEcccccccEEEEEcccccEEEEEEEEEcccccccccEEEEEcccEEEEEEEEcccccEEEEcccccEEEEEEEEEccccccccccHHHHccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccEccccccccccccccccccHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEccccccEccccEEEcccEEEEEEEcEEEEcccccccccHHHHEEEEEEEEccHHHHHHHHHcccHHHHEEEEEEccccccEEEEEEEccccEEEEEEEEcccccccccccEEEEEcccEEEEEEEccccccEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHcccEEEEcccccc
Coil and Loop (DISEMBL)
mrrstgsvprirrgrvlkkvpedrisalpdsvlsniltflpledavatssLSQRWRHAWTSVRnlcfddggpmgaaadnpdlVDEFNNFIESvmagtdpvsihTFSLrsvnairrdrfplwVSQAIMRNVREMEIDIIQyapmqlpgcvyssMTLEVLRLHTafrfadppdgvcfpqlKILQIYIthpenrvteklfcscpsltelsltvliqpddppanfiiqsttlNTLTFVVLFASLrgmsyhhravimapnlqlIRIVDNMLMEYEVHEMQSIQQATLDLQhwesdtvdpqraRNLIEGVATTACLILSGGVLL
Flexible Loop (DISEMBL)
mrrstgsvprirrgrvlkkvpedrisalpdsvlsnILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGTDPVSIHTFSLrsvnairrdrfplWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVLL
Low Complexity Region (SEG)
MRRSTGSVPRIRRGRVLKKVPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSttlntltfvvlfASLRGMSYHHRAVIMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVLL
Disordered region (IsUnstruct)
************************ISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV**
Disordered Region (DISOPRED)
**************************ALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVLL
Disordered Region (DISEMBL)
*********RIRRGRVLKKVPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVLL
Disordered Region (DISPRO)
**********************DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRSTGSVPRIRRGRVLKKVPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
Q8L7H1	381	F-box/LRR-repeat protein	yes	no	0.801	0.669	0.289	2e-20
Q8H1R7	419	F-box/FBD/LRR-repeat prot	no	no	0.773	0.587	0.305	4e-20
Q9LX51	520	F-box/LRR-repeat protein	no	no	0.893	0.546	0.283	1e-19
Q94B46	468	F-box/LRR-repeat protein	no	no	0.886	0.602	0.264	2e-18
Q9LQC1	505	Putative F-box protein At	no	no	0.880	0.554	0.291	3e-18
Q6NKX3	448	F-box/FBD/LRR-repeat prot	no	no	0.867	0.616	0.308	5e-18
Q9FJ30	540	Putative F-box/LRR-repeat	no	no	0.949	0.559	0.261	2e-17
Q9FM87	430	Putative FBD-associated F	no	no	0.776	0.574	0.284	3e-17
Q9SCQ5	427	Putative FBD-associated F	no	no	0.707	0.526	0.284	4e-17
Q56W59	455	F-box/LRR-repeat protein	no	no	0.893	0.624	0.291	8e-17

>sp|Q8L7H1|FBL75_ARATH F-box/LRR-repeat protein At4g14103 OS=Arabidopsis thaliana GN=At4g14103 PE=2 SV=1

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 130/266 (48%), Gaps = 11/266 (4%)

Query: 23  DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
           D IS+LPD + S+IL+FLP ++A +TS LS++WR+ +  V NL  DD   +    +  ++
Sbjct: 8   DVISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYLNPENET-EI 66

Query: 83  VDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAP 142
              F +F++ V+A      +H FSL+  + I   R   W++  + R V ++++ +   + 
Sbjct: 67  STSFMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSDLDLHLNLESE 126

Query: 143 MQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVT--EKLFCSC 200
             LP  VY   TL  L+L          + V  P+LK L I  TH E       KL   C
Sbjct: 127 FLLPSQVYLCKTLVWLKLRFGLYPTIDVEDVHLPKLKTLYIEATHFEEHGVGLTKLLSGC 186

Query: 201 PSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIM-APNLQLI 259
           P L +L L       D  + FI    +++  T   L  S +      ++V++  PNL  +
Sbjct: 187 PMLEDLVL-------DDISWFIWDFASVSVPTLKRLRFSWQERDEFPKSVLLDTPNLVYL 239

Query: 260 RIVDNMLMEYEVHEMQSIQQATLDLQ 285
           +  D +  +Y    + S+ +A +DL+
Sbjct: 240 KFTDTVAGKYPKVNLDSLVEAHIDLR 265

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana GN=At4g26340 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 22/268 (8%)

Query: 23  DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
           DRIS L D +L  IL+F+P +D VATS LS+RW+  W  V  L +DD    G        
Sbjct: 2   DRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHTGDYK----- 56

Query: 83  VDEFNNFI-ESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDI---I 138
              F+ F+  S+++   PV  H       +    D   LW+  A+ R +R+++I+I    
Sbjct: 57  --SFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAID-IGLWIGFALTRRLRQLKINIRTSS 113

Query: 139 QYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVT-EKLF 197
             A   LP  +Y+S TLE LRL   F   D P  VC P LK+L +     E+  +   L 
Sbjct: 114 NDASFSLPSSLYTSDTLETLRL-INFVLLDVPSSVCLPSLKVLHLKTVDYEDDASLPSLL 172

Query: 198 CSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQ 257
             CP+L EL +    Q  +    F++ S  L  L+ +      +      R VI  P+L+
Sbjct: 173 FGCPNLEELFVERHDQDLEMDVTFVVPS--LRRLSMID-----KNYGQCDRYVIDVPSLK 225

Query: 258 LIRIVDNMLMEY-EVHEMQSIQQATLDL 284
            + I D+ + +  ++  M  + +A +D+
Sbjct: 226 YLNITDDAVYDVRQIENMPELVEAHVDI 253

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX51|FBL64_ARATH F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 144/321 (44%), Gaps = 37/321 (11%)

Query: 20  VPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPM-GAAAD 78
           V  DRIS+LP+ V+S+IL+FLP ++A +TS LS++WR+ +  V NL FDD     G    
Sbjct: 4   VSRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKPKS 63

Query: 79  NPDLVDEFNNFIESVMAGTDPVSIHTFSLRSVNA-IRRDRFPLWVSQAIMRNVREMEIDI 137
           + +L   F  F++ V+A     S++ FSL   N  +   R   W+   + R V E+++ I
Sbjct: 64  DVELSRSFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELDLSI 123

Query: 138 IQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTE- 194
           ++Y    LP  ++ S TL  L+L  A       D   V  P+LK L I     + R    
Sbjct: 124 LEYP---LPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLPKLKTLYIDCVDVQERGFGF 180

Query: 195 -KLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIM- 252
            KL   CP L EL L  +        N+   S ++ TL  +  F      +Y +   +  
Sbjct: 181 VKLLSGCPVLEELVLMNIGW-----ENWKFCSVSVKTLKRLTFFCE---ETYENPKSVSF 232

Query: 253 -APNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQ---------------- 295
             PNL  +   D +  +Y      S+ +A + L+  E  + D                  
Sbjct: 233 DTPNLVYLEYSDAIASKYPKVNFNSLVEAHIGLRLTEDQSGDADFSEEDYFSEGDEKKQM 292

Query: 296 --RARNLIEGVATTACLILSG 314
              A + ++G++T   L LS 
Sbjct: 293 VGNATDFLKGISTVQILYLSA 313

Arabidopsis thaliana (taxid: 3702)

>sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096 OS=Arabidopsis thaliana GN=At4g14096 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 140/306 (45%), Gaps = 24/306 (7%)

Query: 23  DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
           D IS+LP+++  +IL+FLP ++A +TS LS++WR+ +  V NL  D+   +    +  ++
Sbjct: 8   DIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDESVYLNPENET-EV 66

Query: 83  VDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAP 142
              F +F++ V+A      +H FSL+  + +  DR   W++  + R V ++++ +     
Sbjct: 67  SSSFMDFVDRVLALQGNSPLHKFSLKIGDGVEPDRIIPWINNVLERGVSDLDLHVYMETE 126

Query: 143 MQLPGCVYSSMTLEVLR--LHTAFRFADPPDGVCFPQLKILQIYITHPENRVT--EKLFC 198
              P  ++ S TL  L+  L+    F D    V  P+LK L I   + E       KL  
Sbjct: 127 FVFPSEMFLSKTLVRLKLMLYPLLEFED----VYLPKLKTLYIDSCYFEKYGIGLTKLLS 182

Query: 199 SCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQL 258
            CP L +L L      D P   +   S ++ TL  +     +R   +     I  PNL  
Sbjct: 183 GCPILEDLVLD-----DIPWCTWDFASVSVPTLKRLTFSTQVRD-EFPKSVSIDTPNLVY 236

Query: 259 IRIVDNMLMEYEVHEMQSIQQATLDLQ-------HWESDTVDPQRARNLIEGVATTACLI 311
           ++  D +  +Y      S+ +A +DL+       + E+D V    A + I  +     L 
Sbjct: 237 LKFTDTVAGKYPKVNFDSLVEAHIDLRLLQGHQGYGENDMVG--NATDFIMRICNVKTLY 294

Query: 312 LSGGVL 317
           LS   L
Sbjct: 295 LSSNTL 300

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQC1|FB65_ARATH Putative F-box protein At1g58310 OS=Arabidopsis thaliana GN=At1g58310 PE=4 SV=2

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 146/329 (44%), Gaps = 49/329 (14%)

Query: 23  DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
           D IS LPDS+L +IL+FL  ++A +TS L+++WR+ + SV NL FDD   +     NP +
Sbjct: 8   DIISGLPDSLLCHILSFLNTKEAASTSVLAKKWRYLFASVPNLDFDDSVHLRLGKRNPAV 67

Query: 83  VDE----------------FNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAI 126
             E                F +F++ V+   D   +H FSL+  + +   R   W+ + +
Sbjct: 68  SGEDYLKMINERSDQLSTSFMDFVDQVLRLQDNSPLHKFSLKIRDCVDIVRIICWILKVL 127

Query: 127 MRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFR-FADPPDGVCFPQLKILQIYI 185
            R V ++E+D+       LP  ++ S TL  L+L      F D  D V  P+LK L I  
Sbjct: 128 ERGVSDLELDMHLKWKSSLPSKIFLSETLVRLKLSVERGPFIDVED-VHLPKLKTLHIVS 186

Query: 186 THPENRVT--EKLFCSCPSLTELSLTVLIQPDDPPANFI-IQSTTLNTLTF---VVLFAS 239
              E       KL   C  L EL+L  +        +F+ +  TTL  LTF   V+   +
Sbjct: 187 VKFEKHGIGLNKLLSGCHILEELNLEYISW---CLWDFVSVSLTTLKRLTFCGEVMQDEN 243

Query: 240 LRGMSYHHRAVIMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQR--- 296
              +S++       PNL  +   D +  EY      S+ +A ++LQ  E D V+  R   
Sbjct: 244 PISVSFN------TPNLVYLMFTDAIADEYSTVNFDSLVEAHINLQMSE-DQVEQTRFSD 296

Query: 297 ------------ARNLIEGVATTACLILS 313
                       A  LI G+     L LS
Sbjct: 297 SEGNMEGCMVANATELIMGICNVKILYLS 325

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKX3|FDL14_ARATH F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana GN=At2g04230 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 139/298 (46%), Gaps = 22/298 (7%)

Query: 22  EDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPD 81
           EDRIS LPD++L  IL+ LP E+A+ATS LS+RWR  WT +  L FD         DN D
Sbjct: 12  EDRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSNFNPVFDDDNID 71

Query: 82  LVDEFNNFIESVMAGTDPV--SIH-TFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDII 138
                 N  +++     PV  S+H +F  R+          +W++ A  R VR++ +D  
Sbjct: 72  PTMFSENVYKTLSLHKAPVLESLHLSFEGRTDCL----HVGIWIATAFARGVRKLVLDSF 127

Query: 139 --QYAPMQLPGCVYS-SMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITH-PENRVTE 194
             +   + LP  ++S + +LE+L+L  A    D P  VC   L+ L +   H  +     
Sbjct: 128 YQEDQTVTLPSVLFSYNDSLEILKLKCAIDL-DFPSRVCLKSLRKLYLDQVHFKDEESVC 186

Query: 195 KLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAP 254
            L C CPSL +L +      D   A F I S +L  LT   L     G   +   VI AP
Sbjct: 187 NLLCGCPSLQDLVVHRYSNAD--VATFTIASPSLQRLTIEDLRQ--EGGYGNGSYVINAP 242

Query: 255 NLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLIL 312
            L+ + I  N +++ E      +    L+L+  +   V      N++E + +   LIL
Sbjct: 243 GLKYLNI--NGVIDIE----SCLIDKALELEEAKISNVSGITNENILESLTSAKRLIL 294

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ30|FBL88_ARATH Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana GN=At5g41840 PE=4 SV=1

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 146/337 (43%), Gaps = 35/337 (10%)

Query: 13  RGRVLKKVPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDG-- 70
           R +V+  V  DRIS LPD+++ +IL+FLP ++A +T+ L++RW+     V NL FDD   
Sbjct: 4   RKKVVVGVSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIY 63

Query: 71  -GPMGAAADNPDLVDEFNNFIESVMA--GTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIM 127
             P           + F +F++SV+A        +  F ++  + + +     W+ + + 
Sbjct: 64  FHPRARRNKYSKSYESFMSFVDSVLALQAKTKTPLKRFHVKCEDVVDQSWVLEWIPKVLK 123

Query: 128 RNVREMEIDII---QYAP----MQLPGCVYSSMTLEVLRLHTAFR---FADPPDGVCFPQ 177
           R V ++++ I     Y        LP  ++ S TL  +RL   F+     D   GV  P+
Sbjct: 124 RGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTL--VRLKIQFQDGVHIDVEGGVSLPK 181

Query: 178 LKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPD---DPPANFIIQSTTLNTLTFV 234
           LK L +     E  +  KL   C +L EL L  L+  D   D   +  +   TL  L F 
Sbjct: 182 LKTLHLDYFKIETSMLNKLLSGCHALEELVLANLMWADSSEDEACHVSVSIPTLKRLNFC 241

Query: 235 VLFASLRGMSYH----------HRAVIMA---PNLQLIRIVDNMLMEYEVHEMQSIQQAT 281
                  G  +H          +  V ++   PNL  +   D ++ +Y+     S+ +A 
Sbjct: 242 RSEDFYEG-EFHFYEDYDEENINEGVSLSFDNPNLVYLEYSDVIVDKYKQVSFDSLVEAN 300

Query: 282 LDLQHW-ESDTVDPQRARNLIEGVATTACLILSGGVL 317
           L L+   + D  D      L+ G+     L LS   L
Sbjct: 301 LRLRKTPDQDETDKVNVTKLLMGIHNVKILYLSDDTL 337

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM87|FBD26_ARATH Putative FBD-associated F-box protein At5g56440 OS=Arabidopsis thaliana GN=At5g56440 PE=4 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 128/281 (45%), Gaps = 34/281 (12%)

Query: 23  DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
           DRIS LPD V+  IL+F+P +  V+T+ LS+RWR+ W  V  L + D          P L
Sbjct: 2   DRISLLPDDVVFKILSFVPTKVVVSTNLLSKRWRYLWKHVPKLDYRD----------PSL 51

Query: 83  VD----EFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEI--D 136
           VD      + F++  +   +   + T  L             W+S AI R VR + I   
Sbjct: 52  VDTEHWRASRFVDKFLLLHEAPVLETLHLSLSRNCPPSDIETWISVAISRRVRNLHIYRY 111

Query: 137 IIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKIL-QIYITHPENRVTEK 195
           I    P++LP  +Y+  TL  L L   F   D P   CF  LK+L  ++     + +  +
Sbjct: 112 IPSTGPIRLPRSLYTCETLVSLYLLLDFTVDDAPFMFCFRSLKVLVLLFAKFSSDEIVNR 171

Query: 196 LFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPN 255
           L   CP L  L   +LI+ +D   NF I + +L  L  +   + + G       VI AP+
Sbjct: 172 LLSGCPVLEGL---ILIRRNDNVKNFTIAAPSLQRLIAIDCRSQVPGDDVGF--VIKAPS 226

Query: 256 LQLIRIVDNMLMEYEVH-------EMQSIQQATLDLQHWES 289
           L+ +      L+ +  H       +M  + +A++ ++H +S
Sbjct: 227 LKSL-----TLLNFSPHSGFRSLVKMPDLVKASIKVRHGDS 262

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCQ5|FBD10_ARATH Putative FBD-associated F-box protein At3g50710 OS=Arabidopsis thaliana GN=At3g50710 PE=4 SV=1

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 109/253 (43%), Gaps = 28/253 (11%)

Query: 23  DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
           DRIS L D +L  I++ LP +D V T  LS+RW+  W  V  L FDD   +      P  
Sbjct: 2   DRISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEFEL-----EPSY 56

Query: 83  VDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEID-----I 137
              F  +++  M       + T           +    W+   ++RN+RE+EI       
Sbjct: 57  YGRFLKYVDKSMVLNRAQVLETVKFNVGPCCSSEDIATWIRIGMVRNMRELEISHCEGYF 116

Query: 138 IQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQ-IYITHPENRVTEKL 196
            ++  ++LP  +Y+   LEVL+L +      P D VCFP LK L  + + +   +   +L
Sbjct: 117 REHRSIKLPKSLYTYEKLEVLKLASTVVLNVPID-VCFPSLKSLHLVCVEYKTKKSHRRL 175

Query: 197 FCSCPSLTELSLTVLIQPDDPPAN------FIIQSTTLNTLTFVVLFASLRGMSYHHRAV 250
              CP L EL L       D   N      F ++  TL +L+ +     L G       V
Sbjct: 176 LSGCPVLEELVL-------DKSYNSFHVRSFYVEIPTLQSLSILDTSGELYG---DFTFV 225

Query: 251 IMAPNLQLIRIVD 263
           + AP L+    VD
Sbjct: 226 VNAPALKYFNFVD 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q56W59|FBL84_ARATH F-box/LRR-repeat protein At5g35995 OS=Arabidopsis thaliana GN=At5g35995 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 131/302 (43%), Gaps = 18/302 (5%)

Query: 23  DRISALPDSVLSN-ILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPD 81
           D IS+LPD VL   IL+ LP +  V+TS LS+RWR+ +  V +   +D  P+  A     
Sbjct: 5   DFISSLPDEVLGKKILSLLPTKLVVSTSVLSKRWRNLFHFVDSFDLEDSTPIRNA----- 59

Query: 82  LVDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYA 141
             D F++F++  +A      I   +L S     +     W+  A+ R   E+ +   QY 
Sbjct: 60  --DSFSDFMKDTVALLSNCPIKRLTLNS--HYEKSSVNRWIRSALKRGCLELNLQ-SQYD 114

Query: 142 PMQLPGCVYSSMTLEVLRL---HTAFRFADPPDG-VCFPQLKILQIYITHPENRVTEKLF 197
                G  + + TL  L L    T  R   PP+G V FP LK L +     +  +   L 
Sbjct: 115 HYLDIGIFFRNNTLVKLTLSSYRTFLRGNVPPEGRVFFPALKTLSLGAVVAKPALYNWLI 174

Query: 198 CSCPSLTELSLTVLIQPDDPPA-NFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNL 256
             CP L EL +  +   DD P     + S ++  LT V  F       Y     I  PNL
Sbjct: 175 SGCPVLEELFILDVGSGDDQPTWTRSVVSASIKRLTIVFHFPH-NTYPYEDDVEIKTPNL 233

Query: 257 QLIRIVDNMLMEYEVHEMQSIQQATLDLQHWE-SDTVDPQRARNLIEGVATTACLILSGG 315
           + +          +V  + S+ +A LDL+ WE ++T D     NL+  +     L LS  
Sbjct: 234 EFLDYSALRSDGSDVDYLDSLAEARLDLRLWELTNTFDFGEVTNLVSAIRNVKTLHLSSS 293

Query: 316 VL 317
            L
Sbjct: 294 SL 295

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
147812093	607	hypothetical protein VITISV_040899 [Viti	0.905	0.474	0.280	9e-21
18414142	381	F-box/LRR-repeat protein [Arabidopsis th	0.801	0.669	0.289	1e-18
334186507	443	F-box/LRR-repeat protein [Arabidopsis th	0.801	0.575	0.289	2e-18
4539430	374	putative protein [Arabidopsis thaliana]	0.773	0.657	0.305	2e-18
22328947	419	F-box/FBD/LRR-repeat protein [Arabidopsi	0.773	0.587	0.305	3e-18
15231646	520	F-box/LRR-repeat protein [Arabidopsis th	0.893	0.546	0.283	8e-18
297820860	423	hypothetical protein ARALYDRAFT_324460 [	0.852	0.640	0.283	3e-17
18414140	468	F-box/LRR-repeat protein [Arabidopsis th	0.886	0.602	0.264	1e-16
15217928	505	F-box protein [Arabidopsis thaliana] gi|	0.880	0.554	0.291	2e-16
42568929	448	F-box/FBD/LRR-repeat protein [Arabidopsi	0.867	0.616	0.308	3e-16

>gi|147812093|emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 154/314 (49%), Gaps = 26/314 (8%)

Query: 23  DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAA--ADNP 80
           D IS LPD +L +IL+FLP + AV TS LS+RWR+ W SV  L FDD   +  +   +  
Sbjct: 10  DIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVELE 69

Query: 81  DLVDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQY 140
           + +  F NF++ V+  ++   I  F L   +    D    W+  A+ R V+E+++ ++  
Sbjct: 70  ERIIMFQNFVDGVLRHSEVSCIKKFRLGYRDN-NLDSVYSWICIALERRVQELDLHLLID 128

Query: 141 APMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIY-ITHPENRVTEKLFCS 199
             ++LP   +   TL V++L  A  F D P  V  P LK L +  + + ++   +KL   
Sbjct: 129 WRVELPPMFFICKTLVVVKLSCAL-FLDIPTTVWLPSLKALHLKSVEYSDDDSIQKLLSG 187

Query: 200 CPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSY-------HHRAVIM 252
           CP L EL    +I+ ++    +++  +   +L  + +F    G ++        ++ V+ 
Sbjct: 188 CPVLEEL----VIEREERDNQWVVNVSN-PSLKILRIFFFTDGFAHPYEQEDQDYKVVVD 242

Query: 253 APNLQLIRIVDNMLMEYEVHEMQSIQQATLDL-QHWESDTVDPQRA--------RNLIEG 303
           APNL+ + I D +  +Y V ++ S+ +A +D+ Q  E     P             L+  
Sbjct: 243 APNLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIYELLGR 302

Query: 304 VATTACLILSGGVL 317
           ++   CL L+G  L
Sbjct: 303 ISNVKCLSLTGVTL 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414142|ref|NP_567422.1| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|75245750|sp|Q8L7H1.1|FBL75_ARATH RecName: Full=F-box/LRR-repeat protein At4g14103 gi|22136642|gb|AAM91640.1| unknown protein [Arabidopsis thaliana] gi|332657972|gb|AEE83372.1| F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 130/266 (48%), Gaps = 11/266 (4%)

Query: 23  DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
           D IS+LPD + S+IL+FLP ++A +TS LS++WR+ +  V NL  DD   +    +  ++
Sbjct: 8   DVISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYLNPENET-EI 66

Query: 83  VDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAP 142
              F +F++ V+A      +H FSL+  + I   R   W++  + R V ++++ +   + 
Sbjct: 67  STSFMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSDLDLHLNLESE 126

Query: 143 MQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVT--EKLFCSC 200
             LP  VY   TL  L+L          + V  P+LK L I  TH E       KL   C
Sbjct: 127 FLLPSQVYLCKTLVWLKLRFGLYPTIDVEDVHLPKLKTLYIEATHFEEHGVGLTKLLSGC 186

Query: 201 PSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIM-APNLQLI 259
           P L +L L       D  + FI    +++  T   L  S +      ++V++  PNL  +
Sbjct: 187 PMLEDLVL-------DDISWFIWDFASVSVPTLKRLRFSWQERDEFPKSVLLDTPNLVYL 239

Query: 260 RIVDNMLMEYEVHEMQSIQQATLDLQ 285
           +  D +  +Y    + S+ +A +DL+
Sbjct: 240 KFTDTVAGKYPKVNLDSLVEAHIDLR 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186507|ref|NP_001190724.1| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|332657973|gb|AEE83373.1| F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 130/266 (48%), Gaps = 11/266 (4%)

Query: 23  DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
           D IS+LPD + S+IL+FLP ++A +TS LS++WR+ +  V NL  DD   +    +  ++
Sbjct: 8   DVISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYLNPENET-EI 66

Query: 83  VDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAP 142
              F +F++ V+A      +H FSL+  + I   R   W++  + R V ++++ +   + 
Sbjct: 67  STSFMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSDLDLHLNLESE 126

Query: 143 MQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVT--EKLFCSC 200
             LP  VY   TL  L+L          + V  P+LK L I  TH E       KL   C
Sbjct: 127 FLLPSQVYLCKTLVWLKLRFGLYPTIDVEDVHLPKLKTLYIEATHFEEHGVGLTKLLSGC 186

Query: 201 PSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIM-APNLQLI 259
           P L +L L       D  + FI    +++  T   L  S +      ++V++  PNL  +
Sbjct: 187 PMLEDLVL-------DDISWFIWDFASVSVPTLKRLRFSWQERDEFPKSVLLDTPNLVYL 239

Query: 260 RIVDNMLMEYEVHEMQSIQQATLDLQ 285
           +  D +  +Y    + S+ +A +DL+
Sbjct: 240 KFTDTVAGKYPKVNLDSLVEAHIDLR 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4539430|emb|CAB38963.1| putative protein [Arabidopsis thaliana] gi|7269486|emb|CAB79489.1| putative protein [Arabidopsis thaliana]

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 22/268 (8%)

Query: 23  DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
           DRIS L D +L  IL+F+P +D VATS LS+RW+  W  V  L +DD    G        
Sbjct: 2   DRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHTGDYK----- 56

Query: 83  VDEFNNFI-ESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDI---I 138
              F+ F+  S+++   PV  H       +    D   LW+  A+ R +R+++I+I    
Sbjct: 57  --SFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAID-IGLWIGFALTRRLRQLKINIRTSS 113

Query: 139 QYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVT-EKLF 197
             A   LP  +Y+S TLE LRL   F   D P  VC P LK+L +     E+  +   L 
Sbjct: 114 NDASFSLPSSLYTSDTLETLRL-INFVLLDVPSSVCLPSLKVLHLKTVDYEDDASLPSLL 172

Query: 198 CSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQ 257
             CP+L EL +    Q  +    F++ S  L  L+ +      +      R VI  P+L+
Sbjct: 173 FGCPNLEELFVERHDQDLEMDVTFVVPS--LRRLSMID-----KNYGQCDRYVIDVPSLK 225

Query: 258 LIRIVDNMLMEY-EVHEMQSIQQATLDL 284
            + I D+ + +  ++  M  + +A +D+
Sbjct: 226 YLNITDDAVYDVRQIENMPELVEAHVDI 253

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328947|ref|NP_194364.2| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75244651|sp|Q8H1R7.1|FDL27_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At4g26340 gi|23296372|gb|AAN13055.1| unknown protein [Arabidopsis thaliana] gi|332659787|gb|AEE85187.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana]

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 22/268 (8%)

Query: 23  DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
           DRIS L D +L  IL+F+P +D VATS LS+RW+  W  V  L +DD    G        
Sbjct: 2   DRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHTGDYK----- 56

Query: 83  VDEFNNFI-ESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDI---I 138
              F+ F+  S+++   PV  H       +    D   LW+  A+ R +R+++I+I    
Sbjct: 57  --SFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAID-IGLWIGFALTRRLRQLKINIRTSS 113

Query: 139 QYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVT-EKLF 197
             A   LP  +Y+S TLE LRL   F   D P  VC P LK+L +     E+  +   L 
Sbjct: 114 NDASFSLPSSLYTSDTLETLRL-INFVLLDVPSSVCLPSLKVLHLKTVDYEDDASLPSLL 172

Query: 198 CSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQ 257
             CP+L EL +    Q  +    F++ S  L  L+ +      +      R VI  P+L+
Sbjct: 173 FGCPNLEELFVERHDQDLEMDVTFVVPS--LRRLSMID-----KNYGQCDRYVIDVPSLK 225

Query: 258 LIRIVDNMLMEY-EVHEMQSIQQATLDL 284
            + I D+ + +  ++  M  + +A +D+
Sbjct: 226 YLNITDDAVYDVRQIENMPELVEAHVDI 253

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231646|ref|NP_191479.1| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|75264308|sp|Q9LX51.1|FBL64_ARATH RecName: Full=F-box/LRR-repeat protein At3g59200 gi|7801670|emb|CAB91590.1| putative protein [Arabidopsis thaliana] gi|26450835|dbj|BAC42525.1| unknown protein [Arabidopsis thaliana] gi|29028916|gb|AAO64837.1| At3g59200 [Arabidopsis thaliana] gi|332646367|gb|AEE79888.1| F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 144/321 (44%), Gaps = 37/321 (11%)

Query: 20  VPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPM-GAAAD 78
           V  DRIS+LP+ V+S+IL+FLP ++A +TS LS++WR+ +  V NL FDD     G    
Sbjct: 4   VSRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKPKS 63

Query: 79  NPDLVDEFNNFIESVMAGTDPVSIHTFSLRSVNA-IRRDRFPLWVSQAIMRNVREMEIDI 137
           + +L   F  F++ V+A     S++ FSL   N  +   R   W+   + R V E+++ I
Sbjct: 64  DVELSRSFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELDLSI 123

Query: 138 IQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTE- 194
           ++Y    LP  ++ S TL  L+L  A       D   V  P+LK L I     + R    
Sbjct: 124 LEYP---LPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLPKLKTLYIDCVDVQERGFGF 180

Query: 195 -KLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIM- 252
            KL   CP L EL L  +        N+   S ++ TL  +  F      +Y +   +  
Sbjct: 181 VKLLSGCPVLEELVLMNIGW-----ENWKFCSVSVKTLKRLTFFCE---ETYENPKSVSF 232

Query: 253 -APNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQ---------------- 295
             PNL  +   D +  +Y      S+ +A + L+  E  + D                  
Sbjct: 233 DTPNLVYLEYSDAIASKYPKVNFNSLVEAHIGLRLTEDQSGDADFSEEDYFSEGDEKKQM 292

Query: 296 --RARNLIEGVATTACLILSG 314
              A + ++G++T   L LS 
Sbjct: 293 VGNATDFLKGISTVQILYLSA 313

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820860|ref|XP_002878313.1| hypothetical protein ARALYDRAFT_324460 [Arabidopsis lyrata subsp. lyrata] gi|297324151|gb|EFH54572.1| hypothetical protein ARALYDRAFT_324460 [Arabidopsis lyrata subsp. lyrata]

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 132/293 (45%), Gaps = 22/293 (7%)

Query: 25  ISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDLVD 84
           IS LPD VL  IL+FLP + AV+TS LS++W   +     L FDD   + A        +
Sbjct: 15  ISCLPDEVLGKILSFLPTKQAVSTSLLSKKWTFMYRLADCLDFDDSLHLHAEEGEHVFPE 74

Query: 85  EFNNFIESVMAGTDPVSIHTFSLR----SVNAIRRDRFPLWVSQAIMRNVREMEIDIIQY 140
            F N ++  +A     SI  FSL+    + +  +R     W+S  + R V E+++ II +
Sbjct: 75  SFKNCVDRTLALQCDYSIKKFSLKCHIGAHSDCQRACVGRWISNVVGRGVVELDLQIIDW 134

Query: 141 APMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSC 200
               +P  +++S TL  L L TA      P  V  P LK L I          + LF  C
Sbjct: 135 GLHFMPPQLFASKTLVKLTLGTALNLGKLPSDVLLPSLKFLFI----------DTLF--C 182

Query: 201 PSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIR 260
           P L ELS+      D     F I + ++  L+  V + +   + +        P+L  + 
Sbjct: 183 PVLEELSVR---HEDYIGTPFCISNHSIKKLS--VHYDAESEIDFMSGLSFDTPSLVFLD 237

Query: 261 IVDNMLMEYEVHEMQSIQQATLDLQHWESDTV-DPQRARNLIEGVATTACLIL 312
             D  L EY    ++++ +A LD+++ +  T  D  R  +L        CL++
Sbjct: 238 YFDYALNEYTPINLEALVEARLDIRYPKKSTRPDIYRTLHLSPDSVDCVCLVI 290

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414140|ref|NP_567421.1| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|75249810|sp|Q94B46.1|FBL74_ARATH RecName: Full=F-box/LRR-repeat protein At4g14096 gi|14596145|gb|AAK68800.1| Unknown protein [Arabidopsis thaliana] gi|22136112|gb|AAM91134.1| unknown protein [Arabidopsis thaliana] gi|332657971|gb|AEE83371.1| F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 140/306 (45%), Gaps = 24/306 (7%)

Query: 23  DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
           D IS+LP+++  +IL+FLP ++A +TS LS++WR+ +  V NL  D+   +    +  ++
Sbjct: 8   DIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDESVYLNPENET-EV 66

Query: 83  VDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAP 142
              F +F++ V+A      +H FSL+  + +  DR   W++  + R V ++++ +     
Sbjct: 67  SSSFMDFVDRVLALQGNSPLHKFSLKIGDGVEPDRIIPWINNVLERGVSDLDLHVYMETE 126

Query: 143 MQLPGCVYSSMTLEVLR--LHTAFRFADPPDGVCFPQLKILQIYITHPENRVT--EKLFC 198
              P  ++ S TL  L+  L+    F D    V  P+LK L I   + E       KL  
Sbjct: 127 FVFPSEMFLSKTLVRLKLMLYPLLEFED----VYLPKLKTLYIDSCYFEKYGIGLTKLLS 182

Query: 199 SCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQL 258
            CP L +L L      D P   +   S ++ TL  +     +R   +     I  PNL  
Sbjct: 183 GCPILEDLVLD-----DIPWCTWDFASVSVPTLKRLTFSTQVRD-EFPKSVSIDTPNLVY 236

Query: 259 IRIVDNMLMEYEVHEMQSIQQATLDLQ-------HWESDTVDPQRARNLIEGVATTACLI 311
           ++  D +  +Y      S+ +A +DL+       + E+D V    A + I  +     L 
Sbjct: 237 LKFTDTVAGKYPKVNFDSLVEAHIDLRLLQGHQGYGENDMVG--NATDFIMRICNVKTLY 294

Query: 312 LSGGVL 317
           LS   L
Sbjct: 295 LSSNTL 300

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217928|ref|NP_176127.1| F-box protein [Arabidopsis thaliana] gi|374095392|sp|Q9LQC1.2|FB65_ARATH RecName: Full=Putative F-box protein At1g58310 gi|332195413|gb|AEE33534.1| F-box protein [Arabidopsis thaliana]

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 146/329 (44%), Gaps = 49/329 (14%)

Query: 23  DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
           D IS LPDS+L +IL+FL  ++A +TS L+++WR+ + SV NL FDD   +     NP +
Sbjct: 8   DIISGLPDSLLCHILSFLNTKEAASTSVLAKKWRYLFASVPNLDFDDSVHLRLGKRNPAV 67

Query: 83  VDE----------------FNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAI 126
             E                F +F++ V+   D   +H FSL+  + +   R   W+ + +
Sbjct: 68  SGEDYLKMINERSDQLSTSFMDFVDQVLRLQDNSPLHKFSLKIRDCVDIVRIICWILKVL 127

Query: 127 MRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFR-FADPPDGVCFPQLKILQIYI 185
            R V ++E+D+       LP  ++ S TL  L+L      F D  D V  P+LK L I  
Sbjct: 128 ERGVSDLELDMHLKWKSSLPSKIFLSETLVRLKLSVERGPFIDVED-VHLPKLKTLHIVS 186

Query: 186 THPENRVT--EKLFCSCPSLTELSLTVLIQPDDPPANFI-IQSTTLNTLTF---VVLFAS 239
              E       KL   C  L EL+L  +        +F+ +  TTL  LTF   V+   +
Sbjct: 187 VKFEKHGIGLNKLLSGCHILEELNLEYISW---CLWDFVSVSLTTLKRLTFCGEVMQDEN 243

Query: 240 LRGMSYHHRAVIMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQR--- 296
              +S++       PNL  +   D +  EY      S+ +A ++LQ  E D V+  R   
Sbjct: 244 PISVSFN------TPNLVYLMFTDAIADEYSTVNFDSLVEAHINLQMSE-DQVEQTRFSD 296

Query: 297 ------------ARNLIEGVATTACLILS 313
                       A  LI G+     L LS
Sbjct: 297 SEGNMEGCMVANATELIMGICNVKILYLS 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42568929|ref|NP_178506.3| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75223245|sp|Q6NKX3.1|FDL14_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At2g04230 gi|46518465|gb|AAS99714.1| At2g04230 [Arabidopsis thaliana] gi|51971311|dbj|BAD44320.1| hypothetical protein [Arabidopsis thaliana] gi|330250715|gb|AEC05809.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana]

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 139/298 (46%), Gaps = 22/298 (7%)

Query: 22  EDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPD 81
           EDRIS LPD++L  IL+ LP E+A+ATS LS+RWR  WT +  L FD         DN D
Sbjct: 12  EDRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSNFNPVFDDDNID 71

Query: 82  LVDEFNNFIESVMAGTDPV--SIH-TFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDII 138
                 N  +++     PV  S+H +F  R+          +W++ A  R VR++ +D  
Sbjct: 72  PTMFSENVYKTLSLHKAPVLESLHLSFEGRTDCL----HVGIWIATAFARGVRKLVLDSF 127

Query: 139 --QYAPMQLPGCVYS-SMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITH-PENRVTE 194
             +   + LP  ++S + +LE+L+L  A    D P  VC   L+ L +   H  +     
Sbjct: 128 YQEDQTVTLPSVLFSYNDSLEILKLKCAIDL-DFPSRVCLKSLRKLYLDQVHFKDEESVC 186

Query: 195 KLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAP 254
            L C CPSL +L +      D   A F I S +L  LT   L     G   +   VI AP
Sbjct: 187 NLLCGCPSLQDLVVHRYSNAD--VATFTIASPSLQRLTIEDLRQ--EGGYGNGSYVINAP 242

Query: 255 NLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLIL 312
            L+ + I  N +++ E      +    L+L+  +   V      N++E + +   LIL
Sbjct: 243 GLKYLNI--NGVIDIE----SCLIDKALELEEAKISNVSGITNENILESLTSAKRLIL 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
TAIR|locus:2136834	419	AT4G26340 "AT4G26340" [Arabido	0.773	0.587	0.298	9e-22
TAIR|locus:2081157	520	AT3G59200 "AT3G59200" [Arabido	0.581	0.355	0.362	2.6e-19
TAIR|locus:2055993	448	AT2G04230 "AT2G04230" [Arabido	0.867	0.616	0.295	9.8e-19
TAIR|locus:505006456	468	AT4G14096 "AT4G14096" [Arabido	0.880	0.598	0.262	1.1e-18
TAIR|locus:2161073	430	AT5G56440 "AT5G56440" [Arabido	0.789	0.583	0.285	4.3e-17
TAIR|locus:2140538	316	AT4G09920 "AT4G09920" [Arabido	0.849	0.854	0.261	5.2e-17
TAIR|locus:2015681	449	AT1G16930 "AT1G16930" [Arabido	0.886	0.628	0.269	7.5e-17
TAIR|locus:1005716372	441	AT4G00315 "AT4G00315" [Arabido	0.556	0.401	0.312	3.6e-16
TAIR|locus:2162489	450	AT5G22660 "AT5G22660" [Arabido	0.902	0.637	0.257	5.8e-16
TAIR|locus:2101674	427	AT3G50710 "AT3G50710" [Arabido	0.566	0.421	0.302	2.2e-15

TAIR|locus:2136834 AT4G26340 "AT4G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 80/268 (29%), Positives = 126/268 (47%)

Query:    23 DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
             DRIS L D +L  IL+F+P +D VATS LS+RW+  W  V  L +DD    G      D 
Sbjct:     2 DRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHTG------DY 55

Query:    83 VDEFNNFI-ESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDI---I 138
                F+ F+  S+++   PV  H       +    D   LW+  A+ R +R+++I+I    
Sbjct:    56 -KSFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAID-IGLWIGFALTRRLRQLKINIRTSS 113

Query:   139 QYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIY-ITHPENRVTEKLF 197
               A   LP  +Y+S TLE LRL   F   D P  VC P LK+L +  + + ++     L 
Sbjct:   114 NDASFSLPSSLYTSDTLETLRLIN-FVLLDVPSSVCLPSLKVLHLKTVDYEDDASLPSLL 172

Query:   198 CSCPSLTELSLTVLIQPDDPPANFIIQSXXXXXXXXXXXXASLRGMSYHHRAVIMAPNLQ 257
               CP+L EL +    Q  +    F++ S               +      R VI  P+L+
Sbjct:   173 FGCPNLEELFVERHDQDLEMDVTFVVPSLRRLSMID-------KNYGQCDRYVIDVPSLK 225

Query:   258 LIRIVDNMLMEY-EVHEMQSIQQATLDL 284
              + I D+ + +  ++  M  + +A +D+
Sbjct:   226 YLNITDDAVYDVRQIENMPELVEAHVDI 253

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081157 AT3G59200 "AT3G59200" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 2.6e-19, P = 2.6e-19
 Identities = 71/196 (36%), Positives = 103/196 (52%)

Query:    20 VPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPM-GAAAD 78
             V  DRIS+LP+ V+S+IL+FLP ++A +TS LS++WR+ +  V NL FDD     G    
Sbjct:     4 VSRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKPKS 63

Query:    79 NPDLVDEFNNFIESVMAGTDPVSIHTFSLRSVNA-IRRDRFPLWVSQAIMRNVREMEIDI 137
             + +L   F  F++ V+A     S++ FSL   N  +   R   W+   + R V E+++ I
Sbjct:    64 DVELSRSFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELDLSI 123

Query:   138 IQYAPMQLPGCVYSSMTLEVLRLHTAFRFA---DPPDGVCFPQLKILQIYITHPENRVTE 194
             ++Y P  LP  ++ S TL  L+L  A       D  D V  P+LK L I     + R   
Sbjct:   124 LEY-P--LPSEIFVSKTLVRLKLGPANDLTLTLDRKD-VFLPKLKTLYIDCVDVQERGFG 179

Query:   195 --KLFCSCPSLTELSL 208
               KL   CP L EL L
Sbjct:   180 FVKLLSGCPVLEELVL 195

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055993 AT2G04230 "AT2G04230" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 9.8e-19, P = 9.8e-19
 Identities = 88/298 (29%), Positives = 138/298 (46%)

Query:    22 EDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPD 81
             EDRIS LPD++L  IL+ LP E+A+ATS LS+RWR  WT +  L FD         DN D
Sbjct:    12 EDRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSNFNPVFDDDNID 71

Query:    82 LVDEFNNFIESVMAGTDPV--SIH-TFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDII 138
                   N  +++     PV  S+H +F  R+ + +      +W++ A  R VR++ +D  
Sbjct:    72 PTMFSENVYKTLSLHKAPVLESLHLSFEGRT-DCLH---VGIWIATAFARGVRKLVLDSF 127

Query:   139 --QYAPMQLPGCVYS-SMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTE- 194
               +   + LP  ++S + +LE+L+L  A    D P  VC   L+ L +   H ++  +  
Sbjct:   128 YQEDQTVTLPSVLFSYNDSLEILKLKCAIDL-DFPSRVCLKSLRKLYLDQVHFKDEESVC 186

Query:   195 KLFCSCPSLTELSLTVLIQPDDPPANFIIQSXXXXXXXXXXXXASLRGMSYHHRAVIMAP 254
              L C CPSL +L +      D   A F I S                G   +   VI AP
Sbjct:   187 NLLCGCPSLQDLVVHRYSNAD--VATFTIASPSLQRLTIEDLRQE--GGYGNGSYVINAP 242

Query:   255 NLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLIL 312
              L+ + I  N +++ E      +    L+L+  +   V      N++E + +   LIL
Sbjct:   243 GLKYLNI--NGVIDIE----SCLIDKALELEEAKISNVSGITNENILESLTSAKRLIL 294

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006456 AT4G14096 "AT4G14096" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 81/308 (26%), Positives = 137/308 (44%)

Query:    23 DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
             D IS+LP+++  +IL+FLP ++A +TS LS++WR+ +  V NL  D+   +    +  ++
Sbjct:     8 DIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDESVYLNPENET-EV 66

Query:    83 VDEFNNFIESVMA--GTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQY 140
                F +F++ V+A  G  P  +H FSL+  + +  DR   W++  + R V ++++ +   
Sbjct:    67 SSSFMDFVDRVLALQGNSP--LHKFSLKIGDGVEPDRIIPWINNVLERGVSDLDLHVYME 124

Query:   141 APMQLPGCVYSSMTLEVLRL--HTAFRFADPPDGVCFPQLKILQIYITHPENRVT--EKL 196
                  P  ++ S TL  L+L  +    F D    V  P+LK L I   + E       KL
Sbjct:   125 TEFVFPSEMFLSKTLVRLKLMLYPLLEFED----VYLPKLKTLYIDSCYFEKYGIGLTKL 180

Query:   197 FCSCPSLTELSLTVLIQPDDPPANFIIQSXXXXXXXXXXXXASLRGMSYHHRAVIMAPNL 256
                CP L +L L      D P   +   S              +R   +     I  PNL
Sbjct:   181 LSGCPILEDLVLD-----DIPWCTWDFASVSVPTLKRLTFSTQVRD-EFPKSVSIDTPNL 234

Query:   257 QLIRIVDNMLMEYEVHEMQSIQQATLDLQ-------HWESDTVDPQRARNLIEGVATTAC 309
               ++  D +  +Y      S+ +A +DL+       + E+D V    A + I  +     
Sbjct:   235 VYLKFTDTVAGKYPKVNFDSLVEAHIDLRLLQGHQGYGENDMVG--NATDFIMRICNVKT 292

Query:   310 LILSGGVL 317
             L LS   L
Sbjct:   293 LYLSSNTL 300

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161073 AT5G56440 "AT5G56440" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 4.3e-17, P = 4.3e-17
 Identities = 79/277 (28%), Positives = 127/277 (45%)

Query:    23 DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
             DRIS LPD V+  IL+F+P +  V+T+ LS+RWR+ W  V  L + D          P L
Sbjct:     2 DRISLLPDDVVFKILSFVPTKVVVSTNLLSKRWRYLWKHVPKLDYRD----------PSL 51

Query:    83 VD----EFNNFIESVMAGTDPVSIHTFSLR-SVNAIRRDRFPLWVSQAIMRNVREMEID- 136
             VD      + F++  +   +   + T  L  S N    D    W+S AI R VR + I  
Sbjct:    52 VDTEHWRASRFVDKFLLLHEAPVLETLHLSLSRNCPPSD-IETWISVAISRRVRNLHIYR 110

Query:   137 -IIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQI-YITHPENRVTE 194
              I    P++LP  +Y+  TL  L L   F   D P   CF  LK+L + +     + +  
Sbjct:   111 YIPSTGPIRLPRSLYTCETLVSLYLLLDFTVDDAPFMFCFRSLKVLVLLFAKFSSDEIVN 170

Query:   195 KLFCSCPSLTELSLTVLIQPDDPPANFIIQSXXXXXXXXXXXXASLRGMSYHHRAVIMAP 254
             +L   CP L  L   +LI+ +D   NF I +            + + G       VI AP
Sbjct:   171 RLLSGCPVLEGL---ILIRRNDNVKNFTIAAPSLQRLIAIDCRSQVPGDDVGF--VIKAP 225

Query:   255 NLQLIRIVDNMLME--YEVHEMQSIQQATLDLQHWES 289
             +L+ + +++         + +M  + +A++ ++H +S
Sbjct:   226 SLKSLTLLNFSPHSGFRSLVKMPDLVKASIKVRHGDS 262

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2140538 AT4G09920 "AT4G09920" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 5.2e-17, P = 5.2e-17
 Identities = 77/295 (26%), Positives = 132/295 (44%)

Query:    23 DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
             DRI  LPD VL  IL+F+P + AV+TS LS+RW   W  +  L F      G+   +   
Sbjct:     2 DRIIGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKF------GSKRYSESE 55

Query:    83 VDEFNNFIE-SVMAGTDPVSIHTFSL-RSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQY 140
                   F++ ++     PV I +F L  S +  + +   +WV  A+ R +RE++I    Y
Sbjct:    56 FKRLQCFLDRNLPLHRAPV-IESFRLVLSDSHFKPEDIRMWVVVAVSRYIRELKIYSSHY 114

Query:   141 APMQ--LPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIY-ITHPENRVTEKLF 197
                Q  LP  +Y+  +L +L+L       D P  VC P LK L++  + + +    ++L 
Sbjct:   115 GEKQNILPSSLYTCKSLVILKLDGGV-LLDVPRMVCLPSLKTLELKGVRYFKQGSLQRLL 173

Query:   198 CSCPSLTELSLTVLIQPDDPPANFIIQSXXXXXXXXXXXXASLRGMSYHHRAVIMAPNLQ 257
             C+CP L +L   +L++ DD     +I               +L G       +++   L+
Sbjct:   174 CNCPVLEDL-FVLLLRCDDIGMFIVIVPSLQRLSLYLSPRCNLEGF-----VIVLDTPLE 227

Query:   258 LIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLIL 312
               ++VD     Y+ H         L   + E  + D    ++L+E + +   L +
Sbjct:   228 YFKLVDR---NYDRHPYMIENMPKLTSAYVEVISAD---LKSLVESITSVKYLTI 276

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 7.5e-17, P = 7.5e-17
 Identities = 85/315 (26%), Positives = 144/315 (45%)

Query:    18 KKVPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAA 77
             K+   DRIS LPDS+L  IL+ L  +++V TS LS+RWR+ W  V  L  D         
Sbjct:    10 KQRNSDRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSN------- 62

Query:    78 DNPDLVDEFNNFIESVMAGTDPVSIHTFSL-RSVNAIRRDRFPLWVSQAIMRNVREM--- 133
             + PD  D F +F+   +   +   +  F L   VN     RF  W++  I R V      
Sbjct:    63 NFPD-DDVFVSFVNRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAVIKRRVCHFNVH 121

Query:   134 -EIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFA-DPPDGVCFPQLKILQI-YITHPEN 190
              E+D      +++P  +YS   L  L+L   +R A D P+ V  P +KI+ +  + +  +
Sbjct:   122 NEVDDDDEL-VKMPLSLYSCERLVNLQL---YRVALDHPESVSLPCVKIMHLDMVKYDAD 177

Query:   191 RVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSXXXXXXXXXXXXASLRGMSYHHRAV 250
                E L   CP L EL  T++  P+D      ++S             S R  S +H   
Sbjct:   178 STLEILISGCPVLEEL--TIVRDPNDSLEVVCVRSQSLKSFKID----SERYESQNHVVT 231

Query:   251 IMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLD-LQHWE-SDTVDPQRARNL------IE 302
             I AP L+ + + D+    + +H +    +  +D + + E +D ++P  +  +      + 
Sbjct:   232 IDAPRLEYMNLCDHRSDSFIIHNIGPFAKVDIDVIFNVEYNDPLEPDDSSKIAMLGKFLT 291

Query:   303 GVATTACLILSGGVL 317
             G++T + +++S   L
Sbjct:   292 GLSTVSEMVISSDTL 306

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716372 AT4G00315 "AT4G00315" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 3.6e-16, P = 3.6e-16
 Identities = 60/192 (31%), Positives = 98/192 (51%)

Query:    23 DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
             D+ S LPD +L  +L+FLP +DAV TS LS RW+  W  +  L +D      + ++   L
Sbjct:     2 DKTSQLPDELLVKVLSFLPTKDAVRTSLLSMRWKSLWMWLPKLEYDFRHY--SVSEGQGL 59

Query:    83 VDEFNNFIESVMAGTDPVSIHTFSLR----SVNAIRRDRFPLWVSQAIM-RNVREMEIDI 137
                   FI   + G    +I + SL+    ++ +I+ +   LWVS A+   NVRE+ + +
Sbjct:    60 A----RFITLSLLGHKAPAIESLSLKLRYGAIGSIKPEDIYLWVSLAVHDSNVRELSLKL 115

Query:   138 IQYA--PMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQI-YITHPENRVTE 194
               +A  P +LP  +Y   ++ +L+L       D P  VC P LK L +  +T+ +     
Sbjct:   116 CTFAERPTKLPKSLYKCKSIVILKLKDEI-LVDVPRKVCLPSLKTLFLGRVTYSDEDSLH 174

Query:   195 KLFCSCPSLTEL 206
             +L  +CP L +L
Sbjct:   175 RLLSNCPVLEDL 186

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162489 AT5G22660 "AT5G22660" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 5.8e-16, P = 5.8e-16
 Identities = 81/315 (25%), Positives = 136/315 (43%)

Query:    17 LKKVPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAA 76
             +++  EDRIS+LPD +LS IL+ LP E+AV TS LS RW+  W S   L  D    + A 
Sbjct:     7 IRRSGEDRISSLPDHLLSQILSNLPTENAVTTSILSTRWKDLWLSTPVLDID----IDAF 62

Query:    77 ADNPDLVDEFNNFIESVMAGTDPVSIHTFSLR-SVNAIRRDRFPLWVSQAIMRNVREMEI 135
              D    +     F++S         +H   +   + A+       W+  A+ R ++ +E+
Sbjct:    63 DDATTFISFATRFLDSFKDSC----LHKLQISFQMEAVDMWTIIPWIEDAVKRRIQHLEV 118

Query:   136 DI-IQYAPMQLPGCVYSSMTLEVLRLHTAF--RFADPPDGVCFPQLKILQIYIT-HPENR 191
             D  I +    LP  VY S +L  LRLH     RF      V  P LK++ +    +    
Sbjct:   119 DSRIDHMIDTLPLTVYLSESLVSLRLHLVMLHRFVF----VSLPNLKVMHLEENIYSYAE 174

Query:   192 VTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSXXXXXXXXXXXXAS---LRGMSYHHR 248
               EK   SCP L +L  TV+   D+     +  S            +S       S   +
Sbjct:   175 TMEKFISSCPVLEDL--TVVRNVDEATEKVLRVSSQSLNSLKLVIDSSKCWYNDDSDDWK 232

Query:   249 AVIMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQH-----WE-SDTVDPQRARNLIE 302
              VI AP L  + + D+  + + ++ + S  +A + +       W+  ++ +       + 
Sbjct:   233 VVIDAPQLVYLSLKDDQSVSFVINNLCSSAKADIKVSFNVSDIWDLEESFERSNVGKFLT 292

Query:   303 GVATTACLILSGGVL 317
             G+++   + +SG  L
Sbjct:   293 GLSSLRDMTISGTTL 307

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101674 AT3G50710 "AT3G50710" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 58/192 (30%), Positives = 88/192 (45%)

Query:    23 DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDDGGPMGAAADNPDL 82
             DRIS L D +L  I++ LP +D V T  LS+RW+  W  V  L FDD   +      P  
Sbjct:     2 DRISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEFEL-----EPSY 56

Query:    83 VDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEID-----I 137
                F  +++  M       + T           +    W+   ++RN+RE+EI       
Sbjct:    57 YGRFLKYVDKSMVLNRAQVLETVKFNVGPCCSSEDIATWIRIGMVRNMRELEISHCEGYF 116

Query:   138 IQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIY-ITHPENRVTEKL 196
              ++  ++LP  +Y+   LEVL+L +      P D VCFP LK L +  + +   +   +L
Sbjct:   117 REHRSIKLPKSLYTYEKLEVLKLASTVVLNVPID-VCFPSLKSLHLVCVEYKTKKSHRRL 175

Query:   197 FCSCPSLTELSL 208
                CP L EL L
Sbjct:   176 LSGCPVLEELVL 187

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	318
pfam00646	48	pfam00646, F-box, F-box domain	8e-06
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	4e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 42.2 bits (100), Expect = 8e-06
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 23 DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRNLCFDD 69
            +  LPD +L  IL+ L  +D +  S +S+RWR    S++      
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 37.0 bits (87), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 28 LPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTS 61
          LPD +L  IL+ L  +D +    +S++WR    S
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDS 34

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.73
KOG4341	483	consensus F-box protein containing LRR [General fu	99.22
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.87
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.46
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.37
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.26
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.12
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.03
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.98
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.84
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.83
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.72
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.68
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.64
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.46
KOG4341	483	consensus F-box protein containing LRR [General fu	97.4
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.35
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.2
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.18
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.11
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.03
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.15
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.08
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.98
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.94
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.92
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.91
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.61
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	95.51
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.49
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.47
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.11
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.11
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.01
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.75
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	94.38
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	94.32
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	94.17
KOG0617	264	consensus Ras suppressor protein (contains leucine	94.12
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.12
KOG4237	498	consensus Extracellular matrix protein slit, conta	93.64
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.48
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	93.39
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.3
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.22
PRK15386	426	type III secretion protein GogB; Provisional	92.23
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.13
PLN03150	623	hypothetical protein; Provisional	91.8
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	90.9
KOG2123	388	consensus Uncharacterized conserved protein [Funct	90.8
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.63
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	90.43
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	90.07
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	89.39
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.03
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	88.93
PLN03150	623	hypothetical protein; Provisional	88.61
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	88.28
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	88.13
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	88.01
PF13013	109	F-box-like_2: F-box-like domain	86.29
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	83.21

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=2.6e-19  Score=152.99  Aligned_cols=170  Identities=17%  Similarity=0.228  Sum_probs=118.2

Q ss_pred             CCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhcCcCe---eeEEeeCCCCCCCCCCCCchhhHHHHHHHHhhCCCcce
Q 048811           25 ISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVR---NLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGTDPVS  101 (318)
Q Consensus        25 is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~~~~---~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  101 (318)
                      +++||||++..|||.|+.||+.+.+.|||||.++-+.-.   .+++.... .           ......+.+.+     +
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~-i-----------~p~~l~~l~~r-----g  160 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRN-I-----------HPDVLGRLLSR-----G  160 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCc-c-----------ChhHHHHHHhC-----C
Confidence            689999999999999999999999999999997533221   24444443 3           12333344443     4


Q ss_pred             EeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCC--CCcCCCCCCc
Q 048811          102 IHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADP--PDGVCFPQLK  179 (318)
Q Consensus       102 l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~  179 (318)
                      |..|++--.. .+..++.... ..+..+++++|++........+...+..|..|+.|+| .|....++  ..-..-.+|+
T Consensus       161 V~v~Rlar~~-~~~prlae~~-~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl-Eg~~LdD~I~~~iAkN~~L~  237 (419)
T KOG2120|consen  161 VIVFRLARSF-MDQPRLAEHF-SPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL-EGLRLDDPIVNTIAKNSNLV  237 (419)
T ss_pred             eEEEEcchhh-hcCchhhhhh-hhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccc-cccccCcHHHHHHhccccce
Confidence            6666654211 1112111111 1123479999999886555556666778999999999 88877654  1233678999


Q ss_pred             eeEeeEEE-eCcchhhhhhcCCcccceeeeeeecCC
Q 048811          180 ILQIYITH-PENRVTEKLFCSCPSLTELSLTVLIQP  214 (318)
Q Consensus       180 ~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~  214 (318)
                      +|+|+.|. +++.++.-++++|..|.+|+|.+|...
T Consensus       238 ~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~  273 (419)
T KOG2120|consen  238 RLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF  273 (419)
T ss_pred             eeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence            99999987 444459999999999999999999874

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.22  E-value=6.4e-13  Score=118.74  Aligned_cols=264  Identities=14%  Similarity=0.158  Sum_probs=152.2

Q ss_pred             CCChHHHHHHhhcCChhhHhhhhhcchhhHhh------cCcCeeeEEeeCCCCCCCCCCCCchhhHHHHHHHH-hhCCCc
Q 048811           27 ALPDSVLSNILTFLPLEDAVATSSLSQRWRHA------WTSVRNLCFDDGGPMGAAADNPDLVDEFNNFIESV-MAGTDP   99 (318)
Q Consensus        27 ~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~l------w~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~   99 (318)
                      .||.|++..|||+|+++.+.|++++|+-|..+      |.++.-.+|.... -             ...++.+ .|.+|-
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv-~-------------g~VV~~~~~Rcgg~  139 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV-D-------------GGVVENMISRCGGF  139 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC-C-------------CcceehHhhhhccc
Confidence            69999999999999999999999999999864      6666554554433 1             2223333 333444


Q ss_pred             ceEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEcc-CccccCCCCCccCCcccEEEecccceecCC----CCcCC
Q 048811          100 VSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQ-YAPMQLPGCVYSSMTLEVLRLHTAFRFADP----PDGVC  174 (318)
Q Consensus       100 ~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~-~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~----~~~~~  174 (318)
                        +++++++.........+....  ...+++++|.+..+. .+...+-.....|+.|++|.| ..|.....    ..+.+
T Consensus       140 --lk~LSlrG~r~v~~sslrt~~--~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L-~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  140 --LKELSLRGCRAVGDSSLRTFA--SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNL-HSCSSITDVSLKYLAEG  214 (483)
T ss_pred             --cccccccccccCCcchhhHHh--hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhh-cccchhHHHHHHHHHHh
Confidence              888888765443322222211  123578888777662 122223333445888899988 77654432    13458


Q ss_pred             CCCCceeEeeEEEeCcc-hhhhhhcCCcccceeeeeeecCCCCCC-----------Cceeeeccc-c---ceEEEEEEcC
Q 048811          175 FPQLKILQIYITHPENR-VTEKLFCSCPSLTELSLTVLIQPDDPP-----------ANFIIQSTT-L---NTLTFVVLFA  238 (318)
Q Consensus       175 ~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~l~~c~~~~~~~-----------~~~~i~s~~-~---~~~~l~i~~~  238 (318)
                      ||+|+.|++++|.-..+ +++.+..+|..|+++.+.+|....+..           ..+++++.. +   +...+.-.+.
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            99999999988874444 488888899999999888886632200           011111110 0   0000111234


Q ss_pred             ccceEEEeee----------EEEeCCCeeEEEEEecccc-----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcC
Q 048811          239 SLRGMSYHHR----------AVIMAPNLQLIRIVDNMLM-----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEG  303 (318)
Q Consensus       239 ~L~~L~i~~~----------~~i~~P~L~~L~~~~~~~~-----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~  303 (318)
                      .|+.|..++|          +.-..++|+.+.+.++..-     ...-.+.+.|+++.+.-+.--.    ...+.++-.+
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~----d~tL~sls~~  370 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT----DGTLASLSRN  370 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh----hhhHhhhccC
Confidence            5666666666          4455677777777666521     1122345556655554331111    1134455556


Q ss_pred             CCceeEEEee
Q 048811          304 VATTACLILS  313 (318)
Q Consensus       304 l~~v~~L~l~  313 (318)
                      ++.++.|.|+
T Consensus       371 C~~lr~lsls  380 (483)
T KOG4341|consen  371 CPRLRVLSLS  380 (483)
T ss_pred             CchhccCChh
Confidence            6666666554

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.87  E-value=1.8e-09  Score=68.65  Aligned_cols=35  Identities=37%  Similarity=0.671  Sum_probs=31.0

Q ss_pred             CCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhc
Q 048811           25 ISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAW   59 (318)
Q Consensus        25 is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw   59 (318)
                      |+.||+||+.+||++|+.+|+++++.|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999865

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.46  E-value=6.8e-08  Score=61.59  Aligned_cols=37  Identities=41%  Similarity=0.694  Sum_probs=31.2

Q ss_pred             CCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhcCc
Q 048811           25 ISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTS   61 (318)
Q Consensus        25 is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~~   61 (318)
                      +++||+|++.+||++|+.+|.++.+.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5689999999999999999999999999999987654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.37  E-value=3.3e-07  Score=56.10  Aligned_cols=34  Identities=41%  Similarity=0.714  Sum_probs=31.6

Q ss_pred             CChHHHHHHhhcCChhhHhhhhhcchhhHhhcCc
Q 048811           28 LPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTS   61 (318)
Q Consensus        28 LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~~   61 (318)
                      ||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.26  E-value=1.1e-06  Score=91.39  Aligned_cols=83  Identities=18%  Similarity=0.206  Sum_probs=54.0

Q ss_pred             CCceEEEEEEccCccccCCCCCc-cCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVY-SSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      ..++.|+++.... ...+|..++ .+++|++|+| .++.+........+++|++|+|.++.+... +..-+..+++|+.|
T Consensus        93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~L-s~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L  169 (968)
T PLN00113         93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNL-SNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCEEECCCCcc-CCcCChHHhccCCCCCEEEC-cCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEE
Confidence            5788888766532 124666555 6788888888 666554332234677888888887776533 34445677788888


Q ss_pred             eeeeecC
Q 048811          207 SLTVLIQ  213 (318)
Q Consensus       207 ~l~~c~~  213 (318)
                      ++.+|..
T Consensus       170 ~L~~n~l  176 (968)
T PLN00113        170 DLGGNVL  176 (968)
T ss_pred             ECccCcc
Confidence            8877764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=1.1e-07  Score=82.38  Aligned_cols=130  Identities=15%  Similarity=0.136  Sum_probs=90.1

Q ss_pred             HHHCCceEEEEEEccC-ccccCCCCCccCCcccEEEecccceecCCC----CcCCCCCCceeEeeEEEe--Ccchhhhhh
Q 048811          125 AIMRNVREMEIDIIQY-APMQLPGCVYSSMTLEVLRLHTAFRFADPP----DGVCFPQLKILQIYITHP--ENRVTEKLF  197 (318)
Q Consensus       125 a~~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~L~~L~L~~~~~--~~~~l~~ll  197 (318)
                      |-..++++++++.+.. ....+...+.+|+.|..|+| .+|....+.    ...--+.|+.|+|.+++-  ...++..+.
T Consensus       231 AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl-sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~  309 (419)
T KOG2120|consen  231 AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL-SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV  309 (419)
T ss_pred             hccccceeeccccccccchhHHHHHHHhhhhHhhcCc-hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence            3346899999999832 23333344567899999999 888655432    122457899999998863  333488888


Q ss_pred             cCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee---------EEEeCCCeeEEEEEecccc
Q 048811          198 CSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR---------AVIMAPNLQLIRIVDNMLM  267 (318)
Q Consensus       198 ~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~---------~~i~~P~L~~L~~~~~~~~  267 (318)
                      ..||.|.+|+|++|....+            ++...-...+.|++|+++.|         ..-+.|.|.+|+..|+..+
T Consensus       310 ~rcp~l~~LDLSD~v~l~~------------~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKN------------DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             HhCCceeeeccccccccCc------------hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence            9999999999999976433            11111125678888888888         3446788888888777654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.03  E-value=5.7e-06  Score=85.98  Aligned_cols=179  Identities=14%  Similarity=0.147  Sum_probs=85.1

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC-CC-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD-PP-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      .++++|+++.+.. ...+|..+..+++|++|+| .++.+.. .| ....+++|++|+|.++.+.+. +..-+..+++|++
T Consensus       164 ~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~  240 (968)
T PLN00113        164 SSLKVLDLGGNVL-VGKIPNSLTNLTSLEFLTL-ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-IPYEIGGLTSLNH  240 (968)
T ss_pred             CCCCEEECccCcc-cccCChhhhhCcCCCeeec-cCCCCcCcCChHHcCcCCccEEECcCCccCCc-CChhHhcCCCCCE
Confidence            4677777765521 1245555556667777777 5554432 12 223566666666666655432 2333455666666


Q ss_pred             eeeeeecCCCCCC---------CceeeeccccceE-EEEE-EcCccceEEEeee--------EEEeCCCeeEEEEEeccc
Q 048811          206 LSLTVLIQPDDPP---------ANFIIQSTTLNTL-TFVV-LFASLRGMSYHHR--------AVIMAPNLQLIRIVDNML  266 (318)
Q Consensus       206 L~l~~c~~~~~~~---------~~~~i~s~~~~~~-~l~i-~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~  266 (318)
                      |++.+|......+         ..+.++...+... .-.+ ..++|+.|++++|        .....++|++|.+.++..
T Consensus       241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence            6666554311100         0011110000000 0001 2356677777666        112456677777766543


Q ss_pred             c---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecC
Q 048811          267 M---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGG  315 (318)
Q Consensus       267 ~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~  315 (318)
                      .   ...+.++++|+.+.+..+....      .+...+..+++++.|+++.+
T Consensus       321 ~~~~~~~~~~l~~L~~L~L~~n~l~~------~~p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        321 TGKIPVALTSLPRLQVLQLWSNKFSG------EIPKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCCCCcC------cCChHHhCCCCCcEEECCCC
Confidence            2   2235566777776665443211      11223444555555555544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.98  E-value=3.2e-07  Score=86.02  Aligned_cols=148  Identities=16%  Similarity=0.193  Sum_probs=80.5

Q ss_pred             CccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeecc
Q 048811          149 VYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQST  226 (318)
Q Consensus       149 ~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~  226 (318)
                      ++.|.++++|+| .......+.  ...++.+|+.|+|++..+..-.... =+.|+.|++|+|++.....-.++.      
T Consensus       265 Fy~l~kme~l~L-~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-WsftqkL~~LdLs~N~i~~l~~~s------  336 (873)
T KOG4194|consen  265 FYGLEKMEHLNL-ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFTQKLKELDLSSNRITRLDEGS------  336 (873)
T ss_pred             eeeecccceeec-ccchhhhhhcccccccchhhhhccchhhhheeecch-hhhcccceeEeccccccccCChhH------
Confidence            456788888888 655554442  2347888888888877655433222 246888999988888763211111      


Q ss_pred             ccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc------ceeecCCCCceEEEEEEEeccCCCC
Q 048811          227 TLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM------EYEVHEMQSIQQATLDLQHWESDTV  292 (318)
Q Consensus       227 ~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~------~~~~~~~~sL~~l~l~~~~~~~~~~  292 (318)
                            + ....+|++|.+++.        ......+|+.|++..+...      ...+..+|+|+++.+..+....   
T Consensus       337 ------f-~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~---  406 (873)
T KOG4194|consen  337 ------F-RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS---  406 (873)
T ss_pred             ------H-HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee---
Confidence                  1 12344555555544        2233444555554443321      1234446666666665443221   


Q ss_pred             ChhhHHHHhcCCCceeEEEeecCcC
Q 048811          293 DPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       293 ~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                         .-.+.+.++.++++|.|+++.|
T Consensus       407 ---I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  407 ---IPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             ---cchhhhccCcccceecCCCCcc
Confidence               1245566666666666666543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.84  E-value=1.5e-06  Score=78.21  Aligned_cols=176  Identities=14%  Similarity=0.049  Sum_probs=94.1

Q ss_pred             CceEEEEEEccCcccc---CCCCCccC-CcccEEEecccceecCC-----C-CcCCCCCCceeEeeEEEeCcchhhhh--
Q 048811          129 NVREMEIDIIQYAPMQ---LPGCVYSS-MTLEVLRLHTAFRFADP-----P-DGVCFPQLKILQIYITHPENRVTEKL--  196 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~---lp~~~~~~-~~L~~L~L~~~~~~~~~-----~-~~~~~~~L~~L~L~~~~~~~~~l~~l--  196 (318)
                      .+++|+++.+......   +...+..+ ++|+.|+| .+|.+...     . ....+++|++|+|.++.+.+..+..+  
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL-GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc-CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            4777777665322111   11122233 67777777 66655421     0 11245677777777777766543333  


Q ss_pred             -hcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEE-------------EeCCCeeEEEEE
Q 048811          197 -FCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAV-------------IMAPNLQLIRIV  262 (318)
Q Consensus       197 -l~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~-------------i~~P~L~~L~~~  262 (318)
                       +..++.|++|++.+|...+.+..         .....--..++|+.|++++|-.             ...+.|++|.+.
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~---------~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~  258 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGAS---------ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS  258 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHH---------HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence             33455777777777765211000         0000001346778888777610             013678888877


Q ss_pred             ecccc-------ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCC-CceeEEEeecCc
Q 048811          263 DNMLM-------EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGV-ATTACLILSGGV  316 (318)
Q Consensus       263 ~~~~~-------~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l-~~v~~L~l~~~~  316 (318)
                      ++...       ...+..++.|+.+.+..+..  ...+...+.+.+... ++++.|.+..+.
T Consensus       259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKF--GEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCccEEECCCCCC--cHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            76542       11233456677766655432  222245566667766 777777776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.83  E-value=5.8e-06  Score=73.20  Aligned_cols=49  Identities=16%  Similarity=0.251  Sum_probs=26.9

Q ss_pred             CccceEEEeee-------------EEEeCCCeeEEEEEecccc-------ceeecCCCCceEEEEEEEe
Q 048811          238 ASLRGMSYHHR-------------AVIMAPNLQLIRIVDNMLM-------EYEVHEMQSIQQATLDLQH  286 (318)
Q Consensus       238 ~~L~~L~i~~~-------------~~i~~P~L~~L~~~~~~~~-------~~~~~~~~sL~~l~l~~~~  286 (318)
                      |.|+.|++.+|             +.-.+|+|+.+.+.++...       ...+...|.|+++.|+.+.
T Consensus       241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            45666666666             3333666666666665442       1233446666666665553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=4.8e-06  Score=75.74  Aligned_cols=167  Identities=14%  Similarity=0.140  Sum_probs=104.2

Q ss_pred             CCceEEEEEEccC-ccccCCCCCccCCcccEEEecccceecCCCC---cCCCCCCceeEeeEEEeCcchhhhhhcCCccc
Q 048811          128 RNVREMEIDIIQY-APMQLPGCVYSSMTLEVLRLHTAFRFADPPD---GVCFPQLKILQIYITHPENRVTEKLFCSCPSL  203 (318)
Q Consensus       128 ~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L  203 (318)
                      .++++|+++..-. ...++-..+-..++|+.|+| ....+..+..   ...+++||+|+|..|.+...++..++.+||.|
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNl-s~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNL-SSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhccc-ccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            4677777765411 11122223334578888888 5544433322   23799999999999999987899999999999


Q ss_pred             ceeeeeeecCCCCCCCceeeeccccceEEEE-EEcCccceEEEeee---------EEEeCCCeeEEEEEeccccc---e-
Q 048811          204 TELSLTVLIQPDDPPANFIIQSTTLNTLTFV-VLFASLRGMSYHHR---------AVIMAPNLQLIRIVDNMLME---Y-  269 (318)
Q Consensus       204 e~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~-i~~~~L~~L~i~~~---------~~i~~P~L~~L~~~~~~~~~---~-  269 (318)
                      +.|.+.+.... .             ..... -...+|+.|++++.         ..-+.|+|..|++..+....   + 
T Consensus       225 ~~L~L~~N~~~-~-------------~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d  290 (505)
T KOG3207|consen  225 EVLYLEANEII-L-------------IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPD  290 (505)
T ss_pred             HHhhhhccccc-c-------------eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCC
Confidence            99999998541 0             11111 13467899998887         44567788888877765431   1 


Q ss_pred             -----eecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeec
Q 048811          270 -----EVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSG  314 (318)
Q Consensus       270 -----~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~  314 (318)
                           ....+|+|+.+.+.-+...     .-...+=+..+.++++|.+..
T Consensus       291 ~~s~~kt~~f~kL~~L~i~~N~I~-----~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  291 VESLDKTHTFPKLEYLNISENNIR-----DWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             ccchhhhcccccceeeecccCccc-----cccccchhhccchhhhhhccc
Confidence                 2346788998888655321     011123344555666655443

>PLN03210 Resistant to P

Probab=97.70  E-value=3.9e-05  Score=80.99  Aligned_cols=56  Identities=18%  Similarity=0.256  Sum_probs=25.4

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccce-ecCCCCcCCCCCCceeEeeEE
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFR-FADPPDGVCFPQLKILQIYIT  186 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~  186 (318)
                      +++.|++..+. ....+|..+..+++|+.|++ .+|. +...|....+++|++|+|.+|
T Consensus       658 ~Le~L~L~~c~-~L~~lp~si~~L~~L~~L~L-~~c~~L~~Lp~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        658 NLETLKLSDCS-SLVELPSSIQYLNKLEDLDM-SRCENLEILPTGINLKSLYRLNLSGC  714 (1153)
T ss_pred             cccEEEecCCC-CccccchhhhccCCCCEEeC-CCCCCcCccCCcCCCCCCCEEeCCCC
Confidence            44444444331 12234444444555555555 4442 222233334555555555544

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.68  E-value=6.5e-06  Score=74.12  Aligned_cols=174  Identities=17%  Similarity=0.150  Sum_probs=113.3

Q ss_pred             CCceEEEEEEccCccccCCCCCccC---CcccEEEecccceecCCC------CcCCC-CCCceeEeeEEEeCcch---hh
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSS---MTLEVLRLHTAFRFADPP------DGVCF-PQLKILQIYITHPENRV---TE  194 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~---~~L~~L~L~~~~~~~~~~------~~~~~-~~L~~L~L~~~~~~~~~---l~  194 (318)
                      .++++|+++.+.... ..+..+...   ++|++|++ .++.+....      ....+ ++|++|+|.++.+....   +.
T Consensus        81 ~~L~~L~l~~~~~~~-~~~~~~~~l~~~~~L~~L~l-s~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          81 CGLQELDLSDNALGP-DGCGVLESLLRSSSLQELKL-NNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             CceeEEEccCCCCCh-hHHHHHHHHhccCcccEEEe-eCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            588899987663221 111111112   55999999 777654311      11245 89999999999988544   55


Q ss_pred             hhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEE---EEcCccceEEEeee------------EEEeCCCeeEE
Q 048811          195 KLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV---VLFASLRGMSYHHR------------AVIMAPNLQLI  259 (318)
Q Consensus       195 ~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~---i~~~~L~~L~i~~~------------~~i~~P~L~~L  259 (318)
                      ..+.+|+.|++|++.+|...+.            ....+.   ...++|+.|++++|            ..-..|+|++|
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L  226 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDA------------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL  226 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchH------------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE
Confidence            5677889999999999876311            011110   12368999999987            23356889999


Q ss_pred             EEEeccccc----eeec----CCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          260 RIVDNMLME----YEVH----EMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       260 ~~~~~~~~~----~~~~----~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      +++++....    ....    ..+.|+++++..+.....  ....+...+..+++++.|.++.+.+
T Consensus       227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD--GAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcH--HHHHHHHHHhcCCCccEEECCCCCC
Confidence            999976531    1111    247899999876642211  2456677788889999999988753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=97.64  E-value=0.0001  Score=77.97  Aligned_cols=62  Identities=16%  Similarity=0.092  Sum_probs=26.9

Q ss_pred             CccCCcccEEEecccce-ecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeec
Q 048811          149 VYSSMTLEVLRLHTAFR-FADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLI  212 (318)
Q Consensus       149 ~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  212 (318)
                      +..+++|+.|+| .++. ....|....+++|++|+|.+|..... +..-+..+++|+.|++.+|.
T Consensus       630 ~~~l~~Lk~L~L-s~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        630 VHSLTGLRNIDL-RGSKNLKEIPDLSMATNLETLKLSDCSSLVE-LPSSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             cccCCCCCEEEC-CCCCCcCcCCccccCCcccEEEecCCCCccc-cchhhhccCCCCEEeCCCCC
Confidence            334445555555 3332 22223333455555555555432211 22233445555555555554

syringae 6; Provisional

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.46  E-value=1.7e-05  Score=70.29  Aligned_cols=139  Identities=16%  Similarity=0.126  Sum_probs=75.4

Q ss_pred             CCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecCCCCCCCcee--eeccccceEEEEEEcCccceEEEee
Q 048811          173 VCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQPDDPPANFI--IQSTTLNTLTFVVLFASLRGMSYHH  247 (318)
Q Consensus       173 ~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~--i~s~~~~~~~l~i~~~~L~~L~i~~  247 (318)
                      .++|+|++|+|++..+...+   +..++++|..|++|.|.+|.....+..++.  +..  +......-..+.|+.+.+.+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~--l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFE--LAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHH--HHHHhccCCCcceEEEEeec
Confidence            36788888888888887776   888889999999999999975322111100  000  00001111345666666665


Q ss_pred             e------------EEEeCCCeeEEEEEecccc-------ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCcee
Q 048811          248 R------------AVIMAPNLQLIRIVDNMLM-------EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTA  308 (318)
Q Consensus       248 ~------------~~i~~P~L~~L~~~~~~~~-------~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~  308 (318)
                      .            ..-..|.|+.+++.-+...       ...+..+|+|+.++|.-+.+...  ....+.+.+..+++++
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e--gs~~LakaL~s~~~L~  244 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE--GSVALAKALSSWPHLR  244 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH--HHHHHHHHhcccchhe
Confidence            4            1222356666665544322       12244566666655544432211  2445555555566666


Q ss_pred             EEEeecC
Q 048811          309 CLILSGG  315 (318)
Q Consensus       309 ~L~l~~~  315 (318)
                      .|.+++.
T Consensus       245 El~l~dc  251 (382)
T KOG1909|consen  245 ELNLGDC  251 (382)
T ss_pred             eeccccc
Confidence            5555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.40  E-value=3e-05  Score=70.36  Aligned_cols=147  Identities=14%  Similarity=0.095  Sum_probs=73.1

Q ss_pred             ccCCcccEEEecccceecCC----CCcCCCCCCceeEeeEEE-eCcchhhhhhcCCcccceeeeeeecCCCCCCCceeee
Q 048811          150 YSSMTLEVLRLHTAFRFADP----PDGVCFPQLKILQIYITH-PENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQ  224 (318)
Q Consensus       150 ~~~~~L~~L~L~~~~~~~~~----~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~  224 (318)
                      ..|..|++|.. .+|.....    .-..++++|+.|-|..|. |.+..+..+-.+||.||.|.+.+|....|.       
T Consensus       291 ~~c~~lq~l~~-s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-------  362 (483)
T KOG4341|consen  291 CGCHALQVLCY-SSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-------  362 (483)
T ss_pred             hhhhHhhhhcc-cCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-------
Confidence            34555666666 55544322    112255666666666665 333335555566666666666666542220       


Q ss_pred             ccccceEEEEEEcCccceEEEeee-------------EEEeCCCeeEEEEEeccccc----eeecCCCCceEEEEEEEec
Q 048811          225 STTLNTLTFVVLFASLRGMSYHHR-------------AVIMAPNLQLIRIVDNMLME----YEVHEMQSIQQATLDLQHW  287 (318)
Q Consensus       225 s~~~~~~~l~i~~~~L~~L~i~~~-------------~~i~~P~L~~L~~~~~~~~~----~~~~~~~sL~~l~l~~~~~  287 (318)
                          ....+...+|.|+.|+++.|             ..-..-.|+.+.+..++...    ..+..++.|+.+.+.-+..
T Consensus       363 ----tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  363 ----TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             ----hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence                12334455566666666655             11223335555555554431    1234566666643332211


Q ss_pred             cCCCCChhhHHHHhcCCCceeEEEe
Q 048811          288 ESDTVDPQRARNLIEGVATTACLIL  312 (318)
Q Consensus       288 ~~~~~~~~~~~~~l~~l~~v~~L~l  312 (318)
                        .  -......|-..+++++...+
T Consensus       439 --v--tk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  439 --V--TKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             --h--hhhhhHHHHhhCccceehhh
Confidence              0  13345666677777776654

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.35  E-value=0.00023  Score=38.67  Aligned_cols=25  Identities=28%  Similarity=0.466  Sum_probs=23.1

Q ss_pred             CCceeEeeEEEeCcch-hhhhhcCCc
Q 048811          177 QLKILQIYITHPENRV-TEKLFCSCP  201 (318)
Q Consensus       177 ~L~~L~L~~~~~~~~~-l~~ll~~cp  201 (318)
                      +||+|+|.++.+.++. ++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            5899999999998886 999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.20  E-value=3.9e-05  Score=62.91  Aligned_cols=121  Identities=21%  Similarity=0.217  Sum_probs=43.5

Q ss_pred             CceEEEEEEccCccccCCCCCc-cCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVY-SSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      +.++|+++.......+   .+. .+.+|+.|+| +++.+...++...++.|++|+|.+..+.+-. ..+...||+|++|.
T Consensus        20 ~~~~L~L~~n~I~~Ie---~L~~~l~~L~~L~L-s~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE---NLGATLDKLEVLDL-SNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELY   94 (175)
T ss_dssp             -------------------S--TT-TT--EEE--TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE
T ss_pred             cccccccccccccccc---chhhhhcCCCEEEC-CCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEE
Confidence            5677777776333221   222 3578999999 8888877777778999999999999887632 23345799999999


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEEEeCCCeeEEEEEecccc------ceeecCCCCceEEE
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLM------EYEVHEMQSIQQAT  281 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~~~------~~~~~~~~sL~~l~  281 (318)
                      +.+....+              ...+    ..|          ...|+|+.|++.|++..      .+.+..+|+|+.++
T Consensus        95 L~~N~I~~--------------l~~l----~~L----------~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   95 LSNNKISD--------------LNEL----EPL----------SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -TTS---S--------------CCCC----GGG----------GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CcCCcCCC--------------hHHh----HHH----------HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            98887731              1111    111          13577777777776643      33556788888754


Q ss_pred             E
Q 048811          282 L  282 (318)
Q Consensus       282 l  282 (318)
                      -
T Consensus       147 ~  147 (175)
T PF14580_consen  147 G  147 (175)
T ss_dssp             T
T ss_pred             C
Confidence            3

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.18  E-value=7.7e-05  Score=73.96  Aligned_cols=60  Identities=23%  Similarity=0.254  Sum_probs=47.4

Q ss_pred             CcccEEEecccceec--CCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          153 MTLEVLRLHTAFRFA--DPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~--~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .+|++|++ .|-...  .++  .+.-||+|++|.+.+..+..+++..+..++|+|..|+++++..
T Consensus       122 ~nL~~LdI-~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI  185 (699)
T KOG3665|consen  122 QNLQHLDI-SGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI  185 (699)
T ss_pred             HhhhhcCc-cccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc
Confidence            56788888 553221  112  2347999999999999999888999999999999999999987

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=4e-05  Score=69.86  Aligned_cols=62  Identities=18%  Similarity=0.183  Sum_probs=31.2

Q ss_pred             eeEEEEEecccc----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          256 LQLIRIVDNMLM----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       256 L~~L~~~~~~~~----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      |+.|+++++...    .+..+.+|.|+.+++..+....-..-......-...++.++.|.++.+.+
T Consensus       248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            555555555432    23455666666666655432111000111123345677888888777654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.05  E-value=9.5e-06  Score=77.23  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=29.2

Q ss_pred             ccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhcCc
Q 048811           23 DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTS   61 (318)
Q Consensus        23 d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~~   61 (318)
                      +.....|+.....+....+..+...+..++++|......
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (482)
T KOG1947|consen   43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS   81 (482)
T ss_pred             eeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence            455677888888888888888887788888888765443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.03  E-value=0.00035  Score=46.63  Aligned_cols=58  Identities=22%  Similarity=0.281  Sum_probs=42.3

Q ss_pred             CcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeec
Q 048811          153 MTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLI  212 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  212 (318)
                      ++|++|+| .++.+...+  ...++++|++|+|.++.+..- -...+.++|+|+.|.+.++.
T Consensus         1 p~L~~L~l-~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDL-SNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEE-TSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEEC-CCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence            46788888 777655543  234788899999888887543 24567889999999988775

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.98  E-value=0.00026  Score=67.08  Aligned_cols=60  Identities=17%  Similarity=0.188  Sum_probs=35.5

Q ss_pred             eCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          252 MAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       252 ~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      ..|+|+.|.+..+...   ...|.+++||+.+.+.-+....-.      -..+-++.++++|+|..+.+
T Consensus       219 ~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~------DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  219 RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD------DGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc------Ccceeeecccceeecccchh
Confidence            3677777777666544   235667777777777544211000      12356778888888876643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.91  E-value=3.4e-05  Score=63.25  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=40.9

Q ss_pred             CCcccEEEecccceecCCCCcC-CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccce
Q 048811          152 SMTLEVLRLHTAFRFADPPDGV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNT  230 (318)
Q Consensus       152 ~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~  230 (318)
                      +..++.|+| .+..+....... .+.+|+.|+|+++.+..-  .. +.+++.|+.|.+.+....+              .
T Consensus        18 ~~~~~~L~L-~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~-l~~L~~L~~L~L~~N~I~~--------------i   79 (175)
T PF14580_consen   18 PVKLRELNL-RGNQISTIENLGATLDKLEVLDLSNNQITKL--EG-LPGLPRLKTLDLSNNRISS--------------I   79 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S---------------
T ss_pred             ccccccccc-cccccccccchhhhhcCCCEEECCCCCCccc--cC-ccChhhhhhcccCCCCCCc--------------c
Confidence            445677777 666555443222 466777777777766542  22 4456777777776666521              0


Q ss_pred             EEEEEEcCccceEEEeeeEEEeCCCeeEEEEEecccc----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCc
Q 048811          231 LTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLM----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVAT  306 (318)
Q Consensus       231 ~~l~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~~~----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~  306 (318)
                      ..      .         +.-..|+|+.|.+.++...    ...+..+|+|+.+++..++..... ++.  ...+..+|+
T Consensus        80 ~~------~---------l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~-~YR--~~vi~~lP~  141 (175)
T PF14580_consen   80 SE------G---------LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK-NYR--LFVIYKLPS  141 (175)
T ss_dssp             CH------H---------HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST-THH--HHHHHH-TT
T ss_pred             cc------c---------hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh-hHH--HHHHHHcCh
Confidence            00      0         0012577777777766543    234668999999999877644332 122  455678888


Q ss_pred             eeEEEe
Q 048811          307 TACLIL  312 (318)
Q Consensus       307 v~~L~l  312 (318)
                      ++.|+-
T Consensus       142 Lk~LD~  147 (175)
T PF14580_consen  142 LKVLDG  147 (175)
T ss_dssp             -SEETT
T ss_pred             hheeCC
Confidence            888854

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.15  E-value=0.00058  Score=58.48  Aligned_cols=123  Identities=20%  Similarity=0.172  Sum_probs=78.5

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcch-hhhhhcCCcccceee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRV-TEKLFCSCPSLTELS  207 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~  207 (318)
                      .+.++.++.+....-.+....-....|+.|++ .++........-.+|+||+|.++...+.... +..++..||+|++|+
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~-~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~   97 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSV-INVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN   97 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhh-hccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence            34555555543222223333333456677777 6666655555557889999999988444433 777888899999999


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEE--EEcCccceEEEeee-----------EEEeCCCeeEEEEEeccc
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFV--VLFASLRGMSYHHR-----------AVIMAPNLQLIRIVDNML  266 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~--i~~~~L~~L~i~~~-----------~~i~~P~L~~L~~~~~~~  266 (318)
                      +++....+              +..+.  -..++|+.|...+|           +..-+|+|++|+..+...
T Consensus        98 ls~Nki~~--------------lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen   98 LSGNKIKD--------------LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             ecCCcccc--------------ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence            99988721              11111  13467888888888           455678888888766544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.08  E-value=0.0097  Score=59.85  Aligned_cols=73  Identities=18%  Similarity=0.212  Sum_probs=40.5

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL  208 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l  208 (318)
                      +-..|+++..  .-..+|..+.  ++|+.|.+ ....+...|.  ..++|++|+|.++.+..  +..   ..+.|++|++
T Consensus       202 ~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L-~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGES--GLTTLPDCLP--AHITTLVI-PDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCC--CCCcCCcchh--cCCCEEEc-cCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeec
Confidence            4445555544  2234565443  36777777 6665555443  35777777777766543  111   2356666666


Q ss_pred             eeecC
Q 048811          209 TVLIQ  213 (318)
Q Consensus       209 ~~c~~  213 (318)
                      .++..
T Consensus       270 s~N~L  274 (788)
T PRK15387        270 FSNPL  274 (788)
T ss_pred             cCCch
Confidence            66543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=0.003  Score=55.39  Aligned_cols=173  Identities=13%  Similarity=0.094  Sum_probs=110.3

Q ss_pred             CCceEEEEEEccCc-cccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          128 RNVREMEIDIIQYA-PMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       128 ~~l~~L~l~~~~~~-~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      ..|+++++...... ..++.+.+-..+.|+.|+| +......+..  +....+|++|.|.+....-......++.-|.++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNl-s~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNL-SCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeec-cCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            37999999876332 3345555556788999999 5444433322  235668999999988877666888889999999


Q ss_pred             eeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----------EEEeCCCeeEEEEEecccc----cee
Q 048811          205 ELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----------AVIMAPNLQLIRIVDNMLM----EYE  270 (318)
Q Consensus       205 ~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----------~~i~~P~L~~L~~~~~~~~----~~~  270 (318)
                      +|+++....-     .+++     +...++-.++.++.|+...|          +.---||+..+.+..++..    ...
T Consensus       150 elHmS~N~~r-----q~n~-----Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~  219 (418)
T KOG2982|consen  150 ELHMSDNSLR-----QLNL-----DDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG  219 (418)
T ss_pred             hhhhccchhh-----hhcc-----ccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc
Confidence            9998877320     0111     11222335678888888888          5666788888877666543    123


Q ss_pred             ecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          271 VHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       271 ~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                      ...+|++.-+++.....     +.-+...-|.+++.+..|.++.+-
T Consensus       220 se~~p~~~~LnL~~~~i-----dswasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  220 SEPFPSLSCLNLGANNI-----DSWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             CCCCCcchhhhhccccc-----ccHHHHHHHcCCchhheeeccCCc
Confidence            44567766655544321     122334556777777777766553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.94  E-value=0.0044  Score=62.29  Aligned_cols=13  Identities=23%  Similarity=-0.066  Sum_probs=7.4

Q ss_pred             cccceeeeeeecC
Q 048811          201 PSLTELSLTVLIQ  213 (318)
Q Consensus       201 p~Le~L~l~~c~~  213 (318)
                      +.|+.|++.+|..
T Consensus       283 ~sL~~L~Ls~N~L  295 (754)
T PRK15370        283 EELRYLSVYDNSI  295 (754)
T ss_pred             CCCcEEECCCCcc
Confidence            4566666665544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.92  E-value=0.0014  Score=62.42  Aligned_cols=141  Identities=16%  Similarity=0.146  Sum_probs=67.7

Q ss_pred             CCccCCcccEEEecccceecCCC----CcCCCCCCceeEeeEEE-eCcchhhhhhcCCcccceeeeeeecCCCCCCCcee
Q 048811          148 CVYSSMTLEVLRLHTAFRFADPP----DGVCFPQLKILQIYITH-PENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFI  222 (318)
Q Consensus       148 ~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~  222 (318)
                      ....|++|++|+| .++......    ....|++|++|.+.+|. +++.++..+..+||.|++|+|.+|....+.     
T Consensus       238 ~~~~~~~L~~l~l-~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~-----  311 (482)
T KOG1947|consen  238 LLSICRKLKSLDL-SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS-----  311 (482)
T ss_pred             hhhhcCCcCccch-hhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHH-----
Confidence            3344566666666 554422211    11136666666666565 455556666666666666666666553220     


Q ss_pred             eeccccceEEEEEEcCccceEEEeeeEEEeCCCeeEEEEEeccc------cceeecCCCCceEEEEEEEeccCCCCChhh
Q 048811          223 IQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNML------MEYEVHEMQSIQQATLDLQHWESDTVDPQR  296 (318)
Q Consensus       223 i~s~~~~~~~l~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~~------~~~~~~~~~sL~~l~l~~~~~~~~~~~~~~  296 (318)
                            ....+...+++|+.|.+..+..  ++.++.+.+.+...      .......++.++++.|..+. ..+.    .
T Consensus       312 ------~l~~~~~~c~~l~~l~~~~~~~--c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~----~  378 (482)
T KOG1947|consen  312 ------GLEALLKNCPNLRELKLLSLNG--CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDL----G  378 (482)
T ss_pred             ------HHHHHHHhCcchhhhhhhhcCC--CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCc----c
Confidence                  1111122344444444333211  33344444333222      13345567778877776653 2211    1


Q ss_pred             HHHHhcCCCce
Q 048811          297 ARNLIEGVATT  307 (318)
Q Consensus       297 ~~~~l~~l~~v  307 (318)
                      ....+.+++++
T Consensus       379 ~~~~l~gc~~l  389 (482)
T KOG1947|consen  379 LELSLRGCPNL  389 (482)
T ss_pred             hHHHhcCCccc
Confidence            24555566655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.91  E-value=0.0001  Score=59.41  Aligned_cols=67  Identities=27%  Similarity=0.375  Sum_probs=40.4

Q ss_pred             cCCCCCccCCcccEEEecccceecCCCCcC-CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          144 QLPGCVYSSMTLEVLRLHTAFRFADPPDGV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       144 ~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ..|+-+-...+|++|++ ...++...|... .+|.|+.|++.-.++..  +..=+.++|.||.|++.+...
T Consensus        47 ~vppnia~l~nlevln~-~nnqie~lp~~issl~klr~lnvgmnrl~~--lprgfgs~p~levldltynnl  114 (264)
T KOG0617|consen   47 VVPPNIAELKNLEVLNL-SNNQIEELPTSISSLPKLRILNVGMNRLNI--LPRGFGSFPALEVLDLTYNNL  114 (264)
T ss_pred             ecCCcHHHhhhhhhhhc-ccchhhhcChhhhhchhhhheecchhhhhc--CccccCCCchhhhhhcccccc
Confidence            34555555667777777 666666655433 67777777665333211  233345677888888777665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.61  E-value=0.0014  Score=65.16  Aligned_cols=126  Identities=17%  Similarity=0.184  Sum_probs=82.3

Q ss_pred             HHCCceEEEEEEccCccccCCCCC-ccCCcccEEEecccceecCC---CCcCCCCCCceeEeeEEEeCcchhhhhhcCCc
Q 048811          126 IMRNVREMEIDIIQYAPMQLPGCV-YSSMTLEVLRLHTAFRFADP---PDGVCFPQLKILQIYITHPENRVTEKLFCSCP  201 (318)
Q Consensus       126 ~~~~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp  201 (318)
                      ...++++|++.....-....|..+ ..+|+|++|.+ .+-.+...   ....+||+|..|+++++.+.+-   .-++.-+
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i-~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lk  195 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVI-SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLK  195 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEe-cCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccc
Confidence            346899999877532222222222 24589999999 77665443   1234899999999999988764   3467788


Q ss_pred             ccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------------EEEeCCCeeEEEEEecccc
Q 048811          202 SLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------------AVIMAPNLQLIRIVDNMLM  267 (318)
Q Consensus       202 ~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------------~~i~~P~L~~L~~~~~~~~  267 (318)
                      +||.|.+.+-......           +...+ ....+|+.|+|+..              .....|+|+.|+.+|....
T Consensus       196 nLq~L~mrnLe~e~~~-----------~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQ-----------DLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             cHHHHhccCCCCCchh-----------hHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            9999998887763210           01111 14578888888875              2334788888888887654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=95.51  E-value=0.0016  Score=64.88  Aligned_cols=32  Identities=16%  Similarity=0.346  Sum_probs=23.6

Q ss_pred             EcCccceEEEeee--------EEEeCCCeeEEEEEecccc
Q 048811          236 LFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM  267 (318)
Q Consensus       236 ~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~  267 (318)
                      ..|.|+.++++..        .....|+|++|+++|+...
T Consensus       450 ~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            4678888888876        2223389999999998754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.49  E-value=0.007  Score=53.72  Aligned_cols=37  Identities=32%  Similarity=0.599  Sum_probs=34.8

Q ss_pred             CccCCCCC----hHHHHHHhhcCChhhHhhhhhcchhhHhh
Q 048811           22 EDRISALP----DSVLSNILTFLPLEDAVATSSLSQRWRHA   58 (318)
Q Consensus        22 ~d~is~LP----d~vL~~Ils~L~~~d~~~ts~vskrWr~l   58 (318)
                      .|.|+.||    |++-..|||+|+..++..+-.|||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            58899999    99999999999999999999999999963

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.47  E-value=0.0053  Score=61.70  Aligned_cols=55  Identities=24%  Similarity=0.375  Sum_probs=27.8

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeC
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPE  189 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  189 (318)
                      .++.|+++.+...  .+|..+.  .+|+.|+| .++.+...|... +++|+.|+|+++.+.
T Consensus       242 ~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~L-s~N~L~~LP~~l-~~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        242 TIQEMELSINRIT--ELPERLP--SALQSLDL-FHNKISCLPENL-PEELRYLSVYDNSIR  296 (754)
T ss_pred             cccEEECcCCccC--cCChhHh--CCCCEEEC-cCCccCcccccc-CCCCcEEECCCCccc
Confidence            5666666654322  3443322  35666666 554444333322 246666666665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.11  E-value=0.015  Score=35.96  Aligned_cols=36  Identities=17%  Similarity=0.151  Sum_probs=20.9

Q ss_pred             CCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          176 PQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       176 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ++|++|+|.++.+.+  +...+..||.|+.|++.++..
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCC
Confidence            356666666666553  444456677777777776655

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.11  E-value=0.038  Score=55.73  Aligned_cols=51  Identities=20%  Similarity=0.260  Sum_probs=26.7

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEE
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITH  187 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~  187 (318)
                      +++.|.+......  .+|..   .++|++|+| .++.+...|.  ..++|++|+|.++.
T Consensus       223 ~L~~L~L~~N~Lt--~LP~l---p~~Lk~LdL-s~N~LtsLP~--lp~sL~~L~Ls~N~  273 (788)
T PRK15387        223 HITTLVIPDNNLT--SLPAL---PPELRTLEV-SGNQLTSLPV--LPPGLLELSIFSNP  273 (788)
T ss_pred             CCCEEEccCCcCC--CCCCC---CCCCcEEEe-cCCccCcccC--cccccceeeccCCc
Confidence            5666666554222  34432   356777777 6555544432  23456666555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.01  E-value=0.011  Score=39.34  Aligned_cols=58  Identities=19%  Similarity=0.255  Sum_probs=39.9

Q ss_pred             CCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          254 PNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       254 P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      |+|++|.+.++...   ...+.++++|+.+.|.-+....-      -...+.++++++.|+++++-|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i------~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI------PPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE------ETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc------CHHHHcCCCCCCEEeCcCCcC
Confidence            67888888777543   34567889999988874432111      124588999999999988754

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.75  E-value=0.016  Score=35.82  Aligned_cols=37  Identities=24%  Similarity=0.296  Sum_probs=28.0

Q ss_pred             CcccEEEecccceecCCCC-cCCCCCCceeEeeEEEeCc
Q 048811          153 MTLEVLRLHTAFRFADPPD-GVCFPQLKILQIYITHPEN  190 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~  190 (318)
                      ++|++|+| .+..+...|. ...+++|++|++.++.+.+
T Consensus         1 ~~L~~L~l-~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDL-SNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEE-TSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEc-cCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            46888999 8877777666 6689999999998888764

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=94.38  E-value=0.0028  Score=63.22  Aligned_cols=121  Identities=15%  Similarity=0.118  Sum_probs=61.3

Q ss_pred             CCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEE-EEcCccceEEEeee-----
Q 048811          175 FPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV-VLFASLRGMSYHHR-----  248 (318)
Q Consensus       175 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~-i~~~~L~~L~i~~~-----  248 (318)
                      ++.|+.|.|.+..+++.-+. ++.+.+.|+.|+|.+.+.-..              .+.. -..+.|+.|.+++.     
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~f--------------pas~~~kle~LeeL~LSGNkL~~L  422 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSF--------------PASKLRKLEELEELNLSGNKLTTL  422 (1081)
T ss_pred             hHHHHHHHHhcCcccccchh-hhccccceeeeeecccccccC--------------CHHHHhchHHhHHHhcccchhhhh
Confidence            45566666666666555333 355667777777777654100              0000 12345555555554     


Q ss_pred             --EEEeCCCeeEEEEEecccc-ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          249 --AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       249 --~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                        .....+.|++|...++... +..+.++|+|+.+.+.-+....     ..+...+.. +++|.|+|++++
T Consensus       423 p~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~-----~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  423 PDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSE-----VTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhh-----hhhhhhCCC-cccceeeccCCc
Confidence              2334455555555554432 3355566677766665443211     111111212 577777777765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=94.32  E-value=0.00063  Score=65.13  Aligned_cols=81  Identities=12%  Similarity=0.014  Sum_probs=40.6

Q ss_pred             ceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811          130 VREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL  208 (318)
Q Consensus       130 l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l  208 (318)
                      ++.|.++..+....++|.++-..++|..++| +...+..+| +...+++|++|+|++..+++-.  .-..--.+||.|++
T Consensus       199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDl-S~N~Lp~vPecly~l~~LrrLNLS~N~iteL~--~~~~~W~~lEtLNl  275 (1255)
T KOG0444|consen  199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL-SENNLPIVPECLYKLRNLRRLNLSGNKITELN--MTEGEWENLETLNL  275 (1255)
T ss_pred             hhhhhcccccchhhcCCCchhhhhhhhhccc-cccCCCcchHHHhhhhhhheeccCcCceeeee--ccHHHHhhhhhhcc
Confidence            3334444444445556666666666666666 333333333 3335666666666666655432  11111234566666


Q ss_pred             eeecC
Q 048811          209 TVLIQ  213 (318)
Q Consensus       209 ~~c~~  213 (318)
                      +....
T Consensus       276 SrNQL  280 (1255)
T KOG0444|consen  276 SRNQL  280 (1255)
T ss_pred             ccchh
Confidence            55544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=94.17  E-value=0.0022  Score=61.54  Aligned_cols=71  Identities=17%  Similarity=0.205  Sum_probs=36.7

Q ss_pred             ccccCCCCCccCCcccEEEecccceecCCCCcC-CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          141 APMQLPGCVYSSMTLEVLRLHTAFRFADPPDGV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       141 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ....+|..+|..+.|+.|+| +...+...|... .-.++-.|+|++..+.+-- ..++.+...|-.|+|++...
T Consensus        91 KnsGiP~diF~l~dLt~lDL-ShNqL~EvP~~LE~AKn~iVLNLS~N~IetIP-n~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   91 KNSGIPTDIFRLKDLTILDL-SHNQLREVPTNLEYAKNSIVLNLSYNNIETIP-NSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             ccCCCCchhcccccceeeec-chhhhhhcchhhhhhcCcEEEEcccCccccCC-chHHHhhHhHhhhccccchh
Confidence            34456666777777777777 555555544322 4455666666666554321 22233333344455554443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=94.12  E-value=0.00085  Score=54.17  Aligned_cols=82  Identities=20%  Similarity=0.182  Sum_probs=52.0

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      +++.|.+...  ...++|..+.+.+.|+.|++ +-......| +...||.|+.|+|.+..+.+..+..=+-....|.-|.
T Consensus        57 nlevln~~nn--qie~lp~~issl~klr~lnv-gmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   57 NLEVLNLSNN--QIEELPTSISSLPKLRILNV-GMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             hhhhhhcccc--hhhhcChhhhhchhhhheec-chhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence            5555555543  45578888888889999988 544443334 5568999999999888877654332222334455555


Q ss_pred             eeeecC
Q 048811          208 LTVLIQ  213 (318)
Q Consensus       208 l~~c~~  213 (318)
                      +.....
T Consensus       134 l~dndf  139 (264)
T KOG0617|consen  134 LGDNDF  139 (264)
T ss_pred             hcCCCc
Confidence            555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.12  E-value=0.0091  Score=52.46  Aligned_cols=59  Identities=20%  Similarity=0.183  Sum_probs=43.1

Q ss_pred             cccEEEecccceecCCC----CcCCCCCCceeEeeEEEeCcch-hhhhhcCCcccceeeeeeecC
Q 048811          154 TLEVLRLHTAFRFADPP----DGVCFPQLKILQIYITHPENRV-TEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       154 ~L~~L~L~~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .++.|.| .+|.+...-    ....+..+++|+|.+..+.+-. +..++...|+|+.|+|+....
T Consensus        46 a~ellvl-n~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L  109 (418)
T KOG2982|consen   46 ALELLVL-NGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL  109 (418)
T ss_pred             chhhhee-cCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC
Confidence            4445566 666543221    1125788999999999988876 889999999999999987766

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=93.64  E-value=0.0038  Score=56.67  Aligned_cols=58  Identities=19%  Similarity=0.199  Sum_probs=37.1

Q ss_pred             CceEEEEEEccCccccCCCCCcc-CCcccEEEecccce--ecCCCCcCCCCCCceeEeeE-EEeC
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYS-SMTLEVLRLHTAFR--FADPPDGVCFPQLKILQIYI-THPE  189 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~-~~~L~~L~L~~~~~--~~~~~~~~~~~~L~~L~L~~-~~~~  189 (318)
                      ...+|+++-.  ....+|...|. .++|++|+| +...  ++.+....++++|.+|.+.+ .++.
T Consensus        68 ~tveirLdqN--~I~~iP~~aF~~l~~LRrLdL-S~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   68 ETVEIRLDQN--QISSIPPGAFKTLHRLRRLDL-SKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             cceEEEeccC--CcccCChhhccchhhhceecc-cccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            5556666553  44567776664 488999999 4433  33334455888888888877 5544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.48  E-value=0.01  Score=58.01  Aligned_cols=64  Identities=9%  Similarity=0.144  Sum_probs=35.0

Q ss_pred             EeEEEEEeeCCCCCCChhHHHHHHH--HCCceEEEEEEccCccccCCCCCccCCcccEEEecccceec
Q 048811          102 IHTFSLRSVNAIRRDRFPLWVSQAI--MRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFA  167 (318)
Q Consensus       102 l~~l~l~~~~~~~~~~~~~wl~~a~--~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~  167 (318)
                      ++.|+.-.....+...+... ....  -...+.+.+......++.-|-.++...+|++|.| .+|.+.
T Consensus        57 ~~~f~a~~s~~ads~vl~qL-q~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LEl-rg~~L~  122 (1096)
T KOG1859|consen   57 VDYFRAYVSDNADSRVLEQL-QRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLEL-RGCDLS  122 (1096)
T ss_pred             CceeEEecCCcccchHHHHH-HHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEe-cCcchh
Confidence            67776654433333333332 2111  1245555554443333333778888899999999 887543

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=93.39  E-value=0.057  Score=49.49  Aligned_cols=37  Identities=24%  Similarity=0.317  Sum_probs=33.4

Q ss_pred             CCCCChHHHHHHhhcCC-hhhHhhhhhcchhhHhhcCc
Q 048811           25 ISALPDSVLSNILTFLP-LEDAVATSSLSQRWRHAWTS   61 (318)
Q Consensus        25 is~LPd~vL~~Ils~L~-~~d~~~ts~vskrWr~lw~~   61 (318)
                      .++||+|+|..|..+|+ .-|++|...||+.||..-..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            67899999999999998 77999999999999986554

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.30  E-value=0.042  Score=48.47  Aligned_cols=37  Identities=30%  Similarity=0.359  Sum_probs=31.4

Q ss_pred             CCccCCCCChHHHHHHhhc-----CChhhHhhhhhcchhhHh
Q 048811           21 PEDRISALPDSVLSNILTF-----LPLEDAVATSSLSQRWRH   57 (318)
Q Consensus        21 ~~d~is~LPd~vL~~Ils~-----L~~~d~~~ts~vskrWr~   57 (318)
                      .-+.|+.||||||..||..     |+.+++.++|+|||.|+.
T Consensus       103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            3456789999999999965     457999999999999985

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.22  E-value=0.14  Score=42.60  Aligned_cols=16  Identities=13%  Similarity=0.243  Sum_probs=10.5

Q ss_pred             EEEeCCCeeEEEEEec
Q 048811          249 AVIMAPNLQLIRIVDN  264 (318)
Q Consensus       249 ~~i~~P~L~~L~~~~~  264 (318)
                      +....|+|+.|++.+.
T Consensus       135 vl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  135 VLYKLPSLRTLDFQKV  150 (233)
T ss_pred             EEEecCcceEeehhhh
Confidence            4456677777777664

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.23  E-value=0.31  Score=45.47  Aligned_cols=69  Identities=16%  Similarity=0.091  Sum_probs=40.8

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceec-CCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFA-DPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      ++.+.|+++.+.  -..+|.   -..+|++|.+ .+|... ..|... .++|++|.+.+|...    ..+.   +.|+.|
T Consensus        52 ~~l~~L~Is~c~--L~sLP~---LP~sLtsL~L-snc~nLtsLP~~L-P~nLe~L~Ls~Cs~L----~sLP---~sLe~L  117 (426)
T PRK15386         52 RASGRLYIKDCD--IESLPV---LPNELTEITI-ENCNNLTTLPGSI-PEGLEKLTVCHCPEI----SGLP---ESVRSL  117 (426)
T ss_pred             cCCCEEEeCCCC--CcccCC---CCCCCcEEEc-cCCCCcccCCchh-hhhhhheEccCcccc----cccc---cccceE
Confidence            578888888762  233442   1246999999 776432 223322 358999999887421    1221   357777


Q ss_pred             eeee
Q 048811          207 SLTV  210 (318)
Q Consensus       207 ~l~~  210 (318)
                      .+..
T Consensus       118 ~L~~  121 (426)
T PRK15386        118 EIKG  121 (426)
T ss_pred             EeCC
Confidence            7653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.13  E-value=0.0029  Score=54.94  Aligned_cols=57  Identities=18%  Similarity=0.160  Sum_probs=38.7

Q ss_pred             CcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          153 MTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .+.+.|+. +||.+.+...-..+|.|+.|.|+-.++..-   .-+..|.+|++|.|....+
T Consensus        19 ~~vkKLNc-wg~~L~DIsic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I   75 (388)
T KOG2123|consen   19 ENVKKLNC-WGCGLDDISICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCI   75 (388)
T ss_pred             HHhhhhcc-cCCCccHHHHHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhccc
Confidence            35567777 777766655555777888888777766553   2355688888887776655

>PLN03150 hypothetical protein; Provisional

Probab=91.80  E-value=0.13  Score=50.96  Aligned_cols=57  Identities=18%  Similarity=0.089  Sum_probs=35.8

Q ss_pred             ccEEEecccceecCC-C-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          155 LEVLRLHTAFRFADP-P-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       155 L~~L~L~~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ++.|+| .++.+... | ....+++|+.|+|.++.+... +...+..++.|+.|+|.++..
T Consensus       420 v~~L~L-~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~l  478 (623)
T PLN03150        420 IDGLGL-DNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSF  478 (623)
T ss_pred             EEEEEC-CCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCC
Confidence            566777 55544321 2 233677788888877766533 444566777888888877765

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.06  E-value=0.018  Score=47.76  Aligned_cols=41  Identities=22%  Similarity=0.123  Sum_probs=31.8

Q ss_pred             CCCCCceeEeeEEEeCcch-hhhhhcCCcccceeeeeeecCC
Q 048811          174 CFPQLKILQIYITHPENRV-TEKLFCSCPSLTELSLTVLIQP  214 (318)
Q Consensus       174 ~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~~  214 (318)
                      +++.++.|.|.+|...+++ +..+-.-.|+|+.|.|++|...
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rI  164 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRI  164 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCee
Confidence            6777888888888877776 7777677888888888888764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=90.90  E-value=0.042  Score=51.15  Aligned_cols=58  Identities=22%  Similarity=0.198  Sum_probs=34.1

Q ss_pred             CcccEEEecccceecCCCCcCCCC--CCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          153 MTLEVLRLHTAFRFADPPDGVCFP--QLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      +.++.|.+ ....+...+....+.  +|+.|++.+..+...  ..-+..+|.|+.|.+.++..
T Consensus       116 ~~l~~L~l-~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886         116 TNLTSLDL-DNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             cceeEEec-CCcccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchh
Confidence            45666666 555554444434433  677777776665432  12355677777777777766

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.80  E-value=0.0026  Score=55.22  Aligned_cols=79  Identities=22%  Similarity=0.097  Sum_probs=52.1

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcch-hhhhhcCCcccceee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRV-TEKLFCSCPSLTELS  207 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~  207 (318)
                      +++.|....|...+..+   ...-+.|++|.| +-..+........|.+|++|.|....+.+-+ +.. +.+.|+|+.|=
T Consensus        20 ~vkKLNcwg~~L~DIsi---c~kMp~lEVLsL-SvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISI---CEKMPLLEVLSL-SVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHHHH---HHhcccceeEEe-eccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHh
Confidence            56666666654333222   112367888888 5555555555568899999999888887765 443 56888888888


Q ss_pred             eeeec
Q 048811          208 LTVLI  212 (318)
Q Consensus       208 l~~c~  212 (318)
                      |....
T Consensus        95 L~ENP   99 (388)
T KOG2123|consen   95 LDENP   99 (388)
T ss_pred             hccCC
Confidence            76643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.63  E-value=0.019  Score=47.59  Aligned_cols=63  Identities=17%  Similarity=0.014  Sum_probs=43.7

Q ss_pred             CceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEEEe
Q 048811          178 LKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIM  252 (318)
Q Consensus       178 L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~i~  252 (318)
                      ++.++-+++.+..+++.+ +.+++.|+.|.+.+|...+|+           ....+.-.+|+|+.|++++|..|+
T Consensus       103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~-----------~L~~l~~~~~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDW-----------CLERLGGLAPSLQDLDLSGCPRIT  165 (221)
T ss_pred             EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhH-----------HHHHhcccccchheeeccCCCeec
Confidence            455555666666666777 578999999999999887652           233343356788888888774444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=90.43  E-value=0.078  Score=49.34  Aligned_cols=80  Identities=20%  Similarity=0.236  Sum_probs=53.5

Q ss_pred             CceEEEEEEccCccccCCCCCccCC-cccEEEecccceecCCC-CcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSM-TLEVLRLHTAFRFADPP-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~-~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      .+..+.+...  ....+|......+ +|+.|++ .+..+...+ ....+++|+.|.+.++.+.+-  .......+.|+.|
T Consensus       117 ~l~~L~l~~n--~i~~i~~~~~~~~~nL~~L~l-~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l--~~~~~~~~~L~~L  191 (394)
T COG4886         117 NLTSLDLDNN--NITDIPPLIGLLKSNLKELDL-SDNKIESLPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSNLNNL  191 (394)
T ss_pred             ceeEEecCCc--ccccCccccccchhhcccccc-cccchhhhhhhhhccccccccccCCchhhhh--hhhhhhhhhhhhe
Confidence            4555555443  3445666555553 8888888 666665553 345788999999888887653  3333367888888


Q ss_pred             eeeeecC
Q 048811          207 SLTVLIQ  213 (318)
Q Consensus       207 ~l~~c~~  213 (318)
                      .+.+...
T Consensus       192 ~ls~N~i  198 (394)
T COG4886         192 DLSGNKI  198 (394)
T ss_pred             eccCCcc
Confidence            8888876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.07  E-value=0.19  Score=43.88  Aligned_cols=43  Identities=16%  Similarity=0.083  Sum_probs=36.6

Q ss_pred             CcCCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecC
Q 048811          171 DGVCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       171 ~~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ....||+|++.+|++..|....   +..++++...|++|.+.+|..
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            3457899999999998887765   888999999999999999975

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=90.07  E-value=0.079  Score=46.79  Aligned_cols=74  Identities=12%  Similarity=0.120  Sum_probs=43.9

Q ss_pred             CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee-----
Q 048811          174 CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR-----  248 (318)
Q Consensus       174 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~-----  248 (318)
                      .+..|++|+|++..+..-  ..-+.-.|.++.|+++.....              .+..+ -..++|..|++++.     
T Consensus       282 TWq~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i~--------------~v~nL-a~L~~L~~LDLS~N~Ls~~  344 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRIR--------------TVQNL-AELPQLQLLDLSGNLLAEC  344 (490)
T ss_pred             hHhhhhhccccccchhhh--hhhhhhccceeEEecccccee--------------eehhh-hhcccceEeecccchhHhh
Confidence            467788888887776543  333445688888888877652              11221 14567777777765     


Q ss_pred             --EEEeCCCeeEEEEEec
Q 048811          249 --AVIMAPNLQLIRIVDN  264 (318)
Q Consensus       249 --~~i~~P~L~~L~~~~~  264 (318)
                        +....-|+++|.+.++
T Consensus       345 ~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  345 VGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhHhhhcCEeeeehhhh
Confidence              3333445555555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=89.39  E-value=0.074  Score=45.82  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=19.4

Q ss_pred             CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeee
Q 048811          174 CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVL  211 (318)
Q Consensus       174 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c  211 (318)
                      .|..|+.|++.++..++-.  . +-..|+|++|.++..
T Consensus        41 ~~~~le~ls~~n~gltt~~--~-~P~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT--N-FPKLPKLKKLELSDN   75 (260)
T ss_pred             cccchhhhhhhccceeecc--c-CCCcchhhhhcccCC
Confidence            5566666666666554421  1 223466677777665

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.03  E-value=0.17  Score=27.19  Aligned_cols=17  Identities=41%  Similarity=0.683  Sum_probs=14.1

Q ss_pred             CcccceeeeeeecCCCC
Q 048811          200 CPSLTELSLTVLIQPDD  216 (318)
Q Consensus       200 cp~Le~L~l~~c~~~~~  216 (318)
                      ||.|++|+|.+|...+|
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            89999999999986544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=88.93  E-value=0.12  Score=53.05  Aligned_cols=82  Identities=18%  Similarity=0.186  Sum_probs=46.3

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCc-CCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDG-VCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      +.+..|+++.+ ....++|..+...-+|+.|+| .+......|.. ..+..|.+|++..+..... +..+....++|+.|
T Consensus       571 ~~LrVLDLs~~-~~l~~LP~~I~~Li~LryL~L-~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~-~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  571 PLLRVLDLSGN-SSLSKLPSSIGELVHLRYLDL-SDTGISHLPSGLGNLKKLIYLNLEVTGRLES-IPGILLELQSLRVL  647 (889)
T ss_pred             cceEEEECCCC-CccCcCChHHhhhhhhhcccc-cCCCccccchHHHHHHhhheecccccccccc-ccchhhhcccccEE
Confidence            45666666653 344567877777778888888 66655544432 2455555555555442211 23334445666666


Q ss_pred             eeeeec
Q 048811          207 SLTVLI  212 (318)
Q Consensus       207 ~l~~c~  212 (318)
                      .+..-.
T Consensus       648 ~l~~s~  653 (889)
T KOG4658|consen  648 RLPRSA  653 (889)
T ss_pred             Eeeccc
Confidence            665443

>PLN03150 hypothetical protein; Provisional

Probab=88.61  E-value=0.3  Score=48.48  Aligned_cols=68  Identities=15%  Similarity=0.126  Sum_probs=45.4

Q ss_pred             cCCCCCccCCcccEEEecccceec-CCC-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          144 QLPGCVYSSMTLEVLRLHTAFRFA-DPP-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       144 ~lp~~~~~~~~L~~L~L~~~~~~~-~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .+|..+..+++|+.|+| .++.+. ..| ....+++|+.|+|.++.+... +..-+..+++|+.|+|.++..
T Consensus       433 ~ip~~i~~L~~L~~L~L-s~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        433 FIPNDISKLRHLQSINL-SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             cCCHHHhCCCCCCEEEC-CCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCcc
Confidence            34555556678888888 666553 223 344778888888888776543 445566778888888887765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=88.28  E-value=0.88  Score=38.06  Aligned_cols=84  Identities=25%  Similarity=0.318  Sum_probs=55.6

Q ss_pred             CCcccEEEecccceecCC-CC-cCCCCCCceeEeeEEEeCcch-hhhhhcCCcccceeeeeeecCCCCCCCceeeecccc
Q 048811          152 SMTLEVLRLHTAFRFADP-PD-GVCFPQLKILQIYITHPENRV-TEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTL  228 (318)
Q Consensus       152 ~~~L~~L~L~~~~~~~~~-~~-~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~  228 (318)
                      .+.|..|.| ....+... |. ...+|+|++|.|.+..+..-+ ++. +..||.|++|.+-+.....-.           
T Consensus        63 l~rL~tLll-~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~-----------  129 (233)
T KOG1644|consen   63 LPRLHTLLL-NNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKK-----------  129 (233)
T ss_pred             ccccceEEe-cCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhccc-----------
Confidence            367888888 66655443 22 236889999999998876644 444 568999999999877552110           


Q ss_pred             ceEEEEE-EcCccceEEEeee
Q 048811          229 NTLTFVV-LFASLRGMSYHHR  248 (318)
Q Consensus       229 ~~~~l~i-~~~~L~~L~i~~~  248 (318)
                      +-+.-.+ ..|+|+.|++..-
T Consensus       130 ~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  130 NYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CceeEEEEecCcceEeehhhh
Confidence            1222233 5689999988774

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=88.13  E-value=0.019  Score=56.28  Aligned_cols=37  Identities=22%  Similarity=0.249  Sum_probs=25.2

Q ss_pred             CcccEEEecccceecCCC---CcCCCCCCceeEeeEEEeCc
Q 048811          153 MTLEVLRLHTAFRFADPP---DGVCFPQLKILQIYITHPEN  190 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~  190 (318)
                      +++++|++ ....-.++.   ....|.+|++|.|.+|.+..
T Consensus        84 qkt~~lkl-~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~  123 (1096)
T KOG1859|consen   84 QKTKVLKL-LPSPARDPTEPISIFPFRSLRVLELRGCDLST  123 (1096)
T ss_pred             hhheeeee-cccCCCCCCCCceeccccceeeEEecCcchhh
Confidence            56677777 554433332   22479999999999998664

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=88.01  E-value=0.26  Score=47.84  Aligned_cols=39  Identities=28%  Similarity=0.466  Sum_probs=36.4

Q ss_pred             CCCccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhh
Q 048811           20 VPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHA   58 (318)
Q Consensus        20 ~~~d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~l   58 (318)
                      ...|.++.||-++-.+||++|+.+++++++++|+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            467999999999999999999999999999999999864

>PF13013 F-box-like_2: F-box-like domain

Probab=86.29  E-value=0.58  Score=35.04  Aligned_cols=30  Identities=20%  Similarity=0.160  Sum_probs=26.6

Q ss_pred             cCCCCChHHHHHHhhcCChhhHhhhhhcch
Q 048811           24 RISALPDSVLSNILTFLPLEDAVATSSLSQ   53 (318)
Q Consensus        24 ~is~LPd~vL~~Ils~L~~~d~~~ts~vsk   53 (318)
                      .+.+||+|++..|+.+-...+.......++
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            477899999999999999999988887776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=83.21  E-value=1.4  Score=39.11  Aligned_cols=139  Identities=16%  Similarity=0.133  Sum_probs=83.0

Q ss_pred             ccCCCCCccCCcccEEEecccceec------CC---C-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeec
Q 048811          143 MQLPGCVYSSMTLEVLRLHTAFRFA------DP---P-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLI  212 (318)
Q Consensus       143 ~~lp~~~~~~~~L~~L~L~~~~~~~------~~---~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  212 (318)
                      +.+...+--|..|+.|.. .+..-.      .+   | ....|.+|+++.++.|.-  ..+..+...=|.|..+.+.+..
T Consensus       172 ~d~~hildf~~~l~~l~v-s~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~  248 (490)
T KOG1259|consen  172 YDFSHVLDFCTQLVALVV-TPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTT  248 (490)
T ss_pred             cchHHHHHhhhheeEEEe-cCCCCCCccccccccccccchHHhhhhheeeeeccch--hheeceeecCchhheeeeeccc
Confidence            334344434567777777 443210      00   1 112588999999988863  4467777888999999998875


Q ss_pred             CCCCCCCc--------eeeeccccceEEEEEEc---CccceEEEeee-------EEEeCCCeeEEEEEecccc-ceeecC
Q 048811          213 QPDDPPAN--------FIIQSTTLNTLTFVVLF---ASLRGMSYHHR-------AVIMAPNLQLIRIVDNMLM-EYEVHE  273 (318)
Q Consensus       213 ~~~~~~~~--------~~i~s~~~~~~~l~i~~---~~L~~L~i~~~-------~~i~~P~L~~L~~~~~~~~-~~~~~~  273 (318)
                      ..+. +.-        ..-+.++.....+....   ..|..|++++.       ..--+|.++.|.++.+... ...+..
T Consensus       249 ~~~~-~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~  327 (490)
T KOG1259|consen  249 IQDV-PSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAE  327 (490)
T ss_pred             cccc-ccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhh
Confidence            4211 100        01111111112222222   46888888876       3446899999999887654 223667


Q ss_pred             CCCceEEEEEEE
Q 048811          274 MQSIQQATLDLQ  285 (318)
Q Consensus       274 ~~sL~~l~l~~~  285 (318)
                      +++|+++.+..+
T Consensus       328 L~~L~~LDLS~N  339 (490)
T KOG1259|consen  328 LPQLQLLDLSGN  339 (490)
T ss_pred             cccceEeecccc
Confidence            888999888655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	1e-04
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 49/341 (14%), Positives = 97/341 (28%), Gaps = 90/341 (26%)

Query: 15  RVLKKVPEDRISALPDSVLSNILTFLPLED----AVAT---SSLSQRWRHAWTSVRNLCF 67
            +L K   D I    D+V   +  F  L       V       L   ++   + ++    
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 68  DDGGPMGAAADNPDLVDEFNNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIM 127
                             +    + +           F+  +V+  R    P    +  +
Sbjct: 104 QPSMMT----------RMYIEQRDRLYNDNQV-----FAKYNVS--RLQ--PYLKLRQAL 144

Query: 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLR---LHTAFRFA---------DPPDGVCF 175
             +R  + +++    +   G   + + L+V     +     F          + P+ V  
Sbjct: 145 LELRPAK-NVLIDG-V--LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-- 198

Query: 176 PQLKILQ-IY----------------ITHPENRVTEKL--FCSCPSLTELSLTVLIQPDD 216
             L++LQ +                 I    + +  +L             L VL    +
Sbjct: 199 --LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVL---LN 252

Query: 217 ---PPA--NFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLMEYEV 271
                A   F +    L T  F  +   L   +  H ++               L   EV
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH---------HSMTLTPDEV 303

Query: 272 HEMQS--IQQATLDLQHWESDTVDPQR----ARNLIEGVAT 306
             +    +     DL   E  T +P+R    A ++ +G+AT
Sbjct: 304 KSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLAT 343

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 4/83 (4%)

Query: 2   RRSTGSVPRIRRGRVLKKVPEDRISALPDSVLSNILTFLPLEDAVATSSL-SQRWRH--- 57
             S             +    + ++ LP+ +L  +L  LP  + V    L   RW+    
Sbjct: 28  EASAEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD 87

Query: 58  AWTSVRNLCFDDGGPMGAAADNP 80
                   C  +G     +AD  
Sbjct: 88  GAPLWLLKCQQEGLVPEGSADEE 110

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 18 KKVPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHA------WTSV 62
          +  P     +LPD +L  I + L L + +  S + +RW         W ++
Sbjct: 2  ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.73
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.02
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.59
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.56
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.53
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.52
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.52
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.51
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.47
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.47
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.46
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.46
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.46
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.44
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.43
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.4
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.4
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.4
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.39
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.38
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.37
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.37
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.37
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.36
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.36
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.34
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.34
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.32
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.3
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.3
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.28
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.28
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.25
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.25
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.2
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.12
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.1
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.1
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.02
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.01
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.01
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.01
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.01
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.97
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.91
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.9
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.87
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.81
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.81
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.68
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.68
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.66
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.64
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.63
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.56
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.56
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.44
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.36
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.29
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.21
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.99
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.98
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.85
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.8
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.4
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.96
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	95.6
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.37
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.32
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	92.88
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	92.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	92.0
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	85.75
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	85.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.08
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	80.39
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	80.11

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=3.8e-21  Score=173.35  Aligned_cols=254  Identities=18%  Similarity=0.174  Sum_probs=139.1

Q ss_pred             CCccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhcC---cCeeeEEeeCCCCCCCCCCCCchhhHHHHHHHHhhCC
Q 048811           21 PEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWT---SVRNLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGT   97 (318)
Q Consensus        21 ~~d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~---~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   97 (318)
                      +...++.||||++.+||++|+.+|+++++.|||+|+++..   ....+++.... +        .   ...+...+..  
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~-~--------~---~~~~~~~~~~--   70 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN-L--------H---PDVTGRLLSQ--   70 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCB-C--------C---HHHHHHHHHT--
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeecccccc-C--------C---HHHHHhhhhc--
Confidence            3456899999999999999999999999999999999843   22345555443 3        1   1112222211  


Q ss_pred             CcceEeEEEEEeeCCC-CCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCC--CCcCC
Q 048811           98 DPVSIHTFSLRSVNAI-RRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADP--PDGVC  174 (318)
Q Consensus        98 ~~~~l~~l~l~~~~~~-~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~  174 (318)
                         .++.+.+....-. ....      .....++++|+++.+......+|..+..|++|++|+| .++.+...  .....
T Consensus        71 ---~l~~L~l~~n~l~~~~~~------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L-~~~~l~~~~~~~l~~  140 (336)
T 2ast_B           71 ---GVIAFRCPRSFMDQPLAE------HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL-EGLRLSDPIVNTLAK  140 (336)
T ss_dssp             ---TCSEEECTTCEECSCCCS------CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC-TTCBCCHHHHHHHTT
T ss_pred             ---cceEEEcCCccccccchh------hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC-cCcccCHHHHHHHhc
Confidence               2445444321100 0000      0012466666666543222224445556677777777 66643321  11224


Q ss_pred             CCCCceeEeeEE-EeCcchhhhhhcCCcccceeeeeee-cCCCCCCCceeeeccccceEEEEEEcC-ccceEEEeee---
Q 048811          175 FPQLKILQIYIT-HPENRVTEKLFCSCPSLTELSLTVL-IQPDDPPANFIIQSTTLNTLTFVVLFA-SLRGMSYHHR---  248 (318)
Q Consensus       175 ~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~l~~c-~~~~~~~~~~~i~s~~~~~~~l~i~~~-~L~~L~i~~~---  248 (318)
                      +++|++|+|.++ .+.+..+..++.+||+|++|++.+| ...+.            ......-..+ +|+.|++++|   
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------~~~~~~~~l~~~L~~L~l~~~~~~  208 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------HVQVAVAHVSETITQLNLSGYRKN  208 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------HHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------HHHHHHHhcccCCCEEEeCCCccc
Confidence            677777777777 4544446666677777777777777 43100            0000001345 6777777665   


Q ss_pred             --------EEEeCCCeeEEEEEeccc-c---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecC
Q 048811          249 --------AVIMAPNLQLIRIVDNML-M---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGG  315 (318)
Q Consensus       249 --------~~i~~P~L~~L~~~~~~~-~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~  315 (318)
                              ..-..|+|++|.+.++.. .   ...+.++++|+++++..+..    ..... ...+..+++++.|.++++
T Consensus       209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~----~~~~~-~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD----IIPET-LLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT----CCGGG-GGGGGGCTTCCEEECTTS
T ss_pred             CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC----CCHHH-HHHHhcCCCCCEEeccCc
Confidence                    112466777777766652 1   22455667777776654421    10111 133455777777776654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.75  E-value=6.6e-20  Score=177.45  Aligned_cols=174  Identities=14%  Similarity=0.175  Sum_probs=97.3

Q ss_pred             CCccCCCCChHHHHHHhhcCC-hhhHhhhhhcchhhHhhcC-cCeeeEEeeCCCCCCCCCCCCchhhHHHHHHHHhhCCC
Q 048811           21 PEDRISALPDSVLSNILTFLP-LEDAVATSSLSQRWRHAWT-SVRNLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGTD   98 (318)
Q Consensus        21 ~~d~is~LPd~vL~~Ils~L~-~~d~~~ts~vskrWr~lw~-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   98 (318)
                      ..|+++.||||||.+||+||+ .+|+++++.|||||+++.. ....+.+.... .          .....   .+.  +.
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~-~----------~~~~~---~~~--~~   65 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCY-A----------VSPAT---VIR--RF   65 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTT-S----------SCHHH---HHH--HC
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccc-c----------cCHHH---HHh--hC
Confidence            358999999999999999999 9999999999999998721 11123332221 1          00111   111  12


Q ss_pred             cceEeEEEEEeeCC---------CCCCChhHHHHHHHH--CCceEEEEEEccCccccCCCCCccCCcccEEEecccce-e
Q 048811           99 PVSIHTFSLRSVNA---------IRRDRFPLWVSQAIM--RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFR-F  166 (318)
Q Consensus        99 ~~~l~~l~l~~~~~---------~~~~~~~~wl~~a~~--~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~-~  166 (318)
                      + .++++.+.....         .....+..|+.....  .++++|+++.+......+......|++|++|+| .+|. +
T Consensus        66 ~-~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L-~~~~~~  143 (594)
T 2p1m_B           66 P-KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL-SSCEGF  143 (594)
T ss_dssp             T-TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE-ESCEEE
T ss_pred             C-CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC-CCcCCC
Confidence            2 377777775331         112445677776553  578888887653222111111124677777777 6663 2


Q ss_pred             cC--CCC-cCCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeec
Q 048811          167 AD--PPD-GVCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLI  212 (318)
Q Consensus       167 ~~--~~~-~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~  212 (318)
                      ..  .+. ...+++|++|+|.++.+.+..   +..+...||+|++|++.+|.
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            21  111 125777777777776655433   45555567777777777665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.73  E-value=2.9e-19  Score=172.94  Aligned_cols=265  Identities=13%  Similarity=0.174  Sum_probs=133.3

Q ss_pred             CCccCC----CCChHHHHHHhhcC-ChhhHhhhhhcchhhHhhcCcCee-eEEeeCCCCCCCCCCCCchhhHHHHHHHHh
Q 048811           21 PEDRIS----ALPDSVLSNILTFL-PLEDAVATSSLSQRWRHAWTSVRN-LCFDDGGPMGAAADNPDLVDEFNNFIESVM   94 (318)
Q Consensus        21 ~~d~is----~LPd~vL~~Ils~L-~~~d~~~ts~vskrWr~lw~~~~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   94 (318)
                      +.|+++    .||||++.+||+|| +.+|+++++.|||||++++...+. +.+. .. +.         ....    .+.
T Consensus         5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~~-~~---------~~~~----~~~   69 (592)
T 3ogk_B            5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-LC-YT---------ATPD----RLS   69 (592)
T ss_dssp             -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-CG-GG---------SCHH----HHH
T ss_pred             hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-ec-cc---------cChH----HHH
Confidence            345555    89999999999999 799999999999999987543221 2211 11 10         0000    011


Q ss_pred             hCCCcceEeEEEEEeeCC---------CCCCChhHHHHHH----------------------------HHCCceEEEEEE
Q 048811           95 AGTDPVSIHTFSLRSVNA---------IRRDRFPLWVSQA----------------------------IMRNVREMEIDI  137 (318)
Q Consensus        95 ~~~~~~~l~~l~l~~~~~---------~~~~~~~~wl~~a----------------------------~~~~l~~L~l~~  137 (318)
                      + +.+ .++++.++.+..         ........|+...                            ...++++|++..
T Consensus        70 ~-~~~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B           70 R-RFP-NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK  147 (592)
T ss_dssp             H-HCT-TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred             H-hCC-CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence            1 111 244554433110         0112223333333                            223355555544


Q ss_pred             cc-CccccCCCCCccCCcccEEEecccceecCCC------CcCCCCCCceeEeeEEEeC---cchhhhhhcCCcccceee
Q 048811          138 IQ-YAPMQLPGCVYSSMTLEVLRLHTAFRFADPP------DGVCFPQLKILQIYITHPE---NRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       138 ~~-~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~------~~~~~~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L~  207 (318)
                      +. .....++.....|++|++|+| .+|.+.+..      ....+++|++|+|.++.+.   ...+..++.+||+|++|+
T Consensus       148 ~~~~~~~~l~~~~~~~~~L~~L~L-~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~  226 (592)
T 3ogk_B          148 CSGFTTDGLLSIVTHCRKIKTLLM-EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK  226 (592)
T ss_dssp             CEEEEHHHHHHHHHHCTTCSEEEC-TTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCCcCHHHHHHHHhhCCCCCEEEC-ccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence            32 111122222335566666666 555543321      1125667777777666654   223666677777777777


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEEE-----------------EcCccceEEEeee-------EEEeCCCeeEEEEEe
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFVV-----------------LFASLRGMSYHHR-------AVIMAPNLQLIRIVD  263 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i-----------------~~~~L~~L~i~~~-------~~i~~P~L~~L~~~~  263 (318)
                      +.+|.....  ..+--..+  ....+.+                 ..++|+.|.++++       ..-..|+|++|.+.+
T Consensus       227 L~~~~~~~l--~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~  302 (592)
T 3ogk_B          227 VGDFEILEL--VGFFKAAA--NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLY  302 (592)
T ss_dssp             CSSCBGGGG--HHHHHHCT--TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETT
T ss_pred             ccCccHHHH--HHHHhhhh--HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCC
Confidence            777654110  00000000  0111111                 1234444444433       122456788888877


Q ss_pred             cccc----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEee
Q 048811          264 NMLM----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILS  313 (318)
Q Consensus       264 ~~~~----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~  313 (318)
                      +...    ...+..+++|+++.+.-+      .....+..+...+++++.|+|+
T Consensus       303 ~~l~~~~~~~~~~~~~~L~~L~L~~~------~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          303 ALLETEDHCTLIQKCPNLEVLETRNV------IGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEEGG------GHHHHHHHHHHHCTTCCEEEEE
T ss_pred             CcCCHHHHHHHHHhCcCCCEEeccCc------cCHHHHHHHHHhCCCCCEEEee
Confidence            6532    122467888888877611      1134566677788888888888

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.02  E-value=6.8e-10  Score=99.61  Aligned_cols=189  Identities=17%  Similarity=0.129  Sum_probs=117.8

Q ss_pred             eEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC-cCCCCCCc
Q 048811          101 SIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD-GVCFPQLK  179 (318)
Q Consensus       101 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~  179 (318)
                      .+..+.+....-.   .+...+..  ..++++|+++.....  .+|..+..+++|++|+| .++.+...|. ...+++|+
T Consensus        82 ~l~~L~L~~n~l~---~lp~~l~~--l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L-s~n~l~~lp~~l~~l~~L~  153 (328)
T 4fcg_A           82 GRVALELRSVPLP---QFPDQAFR--LSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTL-ARNPLRALPASIASLNRLR  153 (328)
T ss_dssp             TCCEEEEESSCCS---SCCSCGGG--GTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEE-ESCCCCCCCGGGGGCTTCC
T ss_pred             ceeEEEccCCCch---hcChhhhh--CCCCCEEECCCCCcc--chhHHHhccCCCCEEEC-CCCccccCcHHHhcCcCCC
Confidence            4777777653321   11111111  347888888776433  67777777888888888 7766655543 34788888


Q ss_pred             eeEeeEEEeCcchhhh--------hhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee---
Q 048811          180 ILQIYITHPENRVTEK--------LFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR---  248 (318)
Q Consensus       180 ~L~L~~~~~~~~~l~~--------ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~---  248 (318)
                      +|+|.++......-..        .+.+++.|++|++.++.....       ..      .+ -..++|+.|+++++   
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-------p~------~l-~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-------PA------SI-ANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-------CG------GG-GGCTTCCEEEEESSCCC
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-------hH------hh-cCCCCCCEEEccCCCCC
Confidence            8888887654432111        134588888888888876211       00      00 13467888888887   


Q ss_pred             ----EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          249 ----AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       249 ----~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                          ..-..|+|++|.++++...   ...++++++|+.+.+..+....      .+...+..+++++.|+|+++.+
T Consensus       220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~------~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL------TLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC------BCCTTGGGCTTCCEEECTTCTT
T ss_pred             cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh------hcchhhhcCCCCCEEeCCCCCc
Confidence                1124578888888886543   3356778888888886542111      1123367889999999988653

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.95  E-value=4.8e-10  Score=72.37  Aligned_cols=39  Identities=28%  Similarity=0.488  Sum_probs=33.2

Q ss_pred             CCccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhc
Q 048811           21 PEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAW   59 (318)
Q Consensus        21 ~~d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw   59 (318)
                      ..+.++.||+|++.+||++|+.+|+++++.|||+|+.+.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            345789999999999999999999999999999999753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.80  E-value=2e-09  Score=96.46  Aligned_cols=163  Identities=13%  Similarity=0.109  Sum_probs=103.1

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceec-CCCCcC----------CCCCCceeEeeEEEeCcchhhhh
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFA-DPPDGV----------CFPQLKILQIYITHPENRVTEKL  196 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~----------~~~~L~~L~L~~~~~~~~~l~~l  196 (318)
                      .++++|+++.....  .+|..+..+++|++|+| .+|... ..|...          ++++|++|+|.++.+.  .+..-
T Consensus       127 ~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L-~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~  201 (328)
T 4fcg_A          127 AGLETLTLARNPLR--ALPASIASLNRLRELSI-RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPAS  201 (328)
T ss_dssp             TTCSEEEEESCCCC--CCCGGGGGCTTCCEEEE-EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGG
T ss_pred             CCCCEEECCCCccc--cCcHHHhcCcCCCEEEC-CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHh
Confidence            47888888776433  66777777788888888 665433 223322          3788888888888776  24444


Q ss_pred             hcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc-
Q 048811          197 FCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM-  267 (318)
Q Consensus       197 l~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~-  267 (318)
                      +..+++|++|++.+|.....       .      ..+ -..++|+.|++++|        .....++|++|.+.++... 
T Consensus       202 l~~l~~L~~L~L~~N~l~~l-------~------~~l-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          202 IANLQNLKSLKIRNSPLSAL-------G------PAI-HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             GGGCTTCCEEEEESSCCCCC-------C------GGG-GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred             hcCCCCCCEEEccCCCCCcC-------c------hhh-ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence            67788888888888876211       0      000 03467888888876        1224577888888775432 


Q ss_pred             --ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecC
Q 048811          268 --EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGG  315 (318)
Q Consensus       268 --~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~  315 (318)
                        ...++++++|+.+.|..+....      .+...+..+++++.+.+..+
T Consensus       268 ~~p~~~~~l~~L~~L~L~~n~~~~------~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          268 TLPLDIHRLTQLEKLDLRGCVNLS------RLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             BCCTTGGGCTTCCEEECTTCTTCC------CCCGGGGGSCTTCEEECCGG
T ss_pred             hcchhhhcCCCCCEEeCCCCCchh------hccHHHhhccCceEEeCCHH
Confidence              2346678888888776543211      12345667777777777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.59  E-value=8.4e-09  Score=85.35  Aligned_cols=148  Identities=11%  Similarity=0.097  Sum_probs=92.3

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|+++.....  .+| .+..+++|++|++ .++.....+....+++|++|+|.++.+.+... ..+..+|.|+.|+
T Consensus        44 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l-~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANINVT--DLT-GIEYAHNIKDLTI-NNIHATNYNPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESSCCS--CCT-TGGGCTTCSEEEE-ESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEE
T ss_pred             CCccEEeccCCCcc--ChH-HHhcCCCCCEEEc-cCCCCCcchhhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEEE
Confidence            47888888775433  444 4666788888888 77766555555578888888888877765332 2356788888888


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEEEeCCCeeEEEEEecc-cc-ceeecCCCCceEEEEEEE
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNM-LM-EYEVHEMQSIQQATLDLQ  285 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~-~~-~~~~~~~~sL~~l~l~~~  285 (318)
                      +.+|...+.            ....                 ....|+|++|.++++. .. ...+..+++|+.+++..+
T Consensus       119 Ls~n~i~~~------------~~~~-----------------l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          119 ISHSAHDDS------------ILTK-----------------INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD  169 (197)
T ss_dssp             CCSSBCBGG------------GHHH-----------------HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB
T ss_pred             ecCCccCcH------------hHHH-----------------HhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC
Confidence            888876211            0000                 0123555555555553 21 224667888888887655


Q ss_pred             eccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          286 HWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       286 ~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      ....       + ..+..+++++.|.++++.+
T Consensus       170 ~i~~-------~-~~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          170 GVHD-------Y-RGIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCCC-------C-TTGGGCSSCCEEEECBC--
T ss_pred             CCcC-------h-HHhccCCCCCEEEeeCccc
Confidence            3211       1 1467788888888887753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.56  E-value=7e-09  Score=90.29  Aligned_cols=62  Identities=21%  Similarity=0.136  Sum_probs=28.6

Q ss_pred             ccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          150 YSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       150 ~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ..+++|++|+| .++.+...+.  ...+++|++|+|.++.+.+. ....+..++.|+.|.+.+|..
T Consensus        82 ~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l  145 (272)
T 3rfs_A           82 KELTNLTYLIL-TGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQL  145 (272)
T ss_dssp             TTCTTCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCCCCCEEEC-CCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCcc
Confidence            34455555555 4444433322  23455555555555544321 222344455555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.53  E-value=3.5e-08  Score=88.62  Aligned_cols=15  Identities=0%  Similarity=0.067  Sum_probs=7.8

Q ss_pred             hcCCCceeEEEeecC
Q 048811          301 IEGVATTACLILSGG  315 (318)
Q Consensus       301 l~~l~~v~~L~l~~~  315 (318)
                      +..+++++.|+++++
T Consensus       329 ~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          329 LASLSKMDSADFANQ  343 (347)
T ss_dssp             GGGCTTCSEESSSCC
T ss_pred             hhhhhccceeehhhh
Confidence            444555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.52  E-value=8.8e-08  Score=83.14  Aligned_cols=60  Identities=23%  Similarity=0.117  Sum_probs=26.1

Q ss_pred             CCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          152 SMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       152 ~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      +++|++|+| .++.+...+.  ...+++|++|+|.++.+... ....+..+++|+.|.+.++..
T Consensus        84 l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l  145 (270)
T 2o6q_A           84 LKNLETLWV-TDNKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNEL  145 (270)
T ss_dssp             CTTCCEEEC-CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCEEEC-CCCcCCcCCHhHcccccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCcC
Confidence            445555555 4443333221  12445555555554443322 122234455555555555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.52  E-value=7.7e-09  Score=92.49  Aligned_cols=177  Identities=11%  Similarity=-0.009  Sum_probs=119.3

Q ss_pred             hHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC--CC-CcCCCCCCceeEeeEEEeCcchhhh
Q 048811          119 PLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD--PP-DGVCFPQLKILQIYITHPENRVTEK  195 (318)
Q Consensus       119 ~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~  195 (318)
                      ...+......+++.+++.....  ...+..++.+++|++|+| .++.+..  .+ ....+++|++|+|.++.+.+... .
T Consensus        61 ~~~~~~~~~~~l~~L~l~~n~l--~~~~~~~~~~~~L~~L~L-~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~  136 (336)
T 2ast_B           61 PDVTGRLLSQGVIAFRCPRSFM--DQPLAEHFSPFRVQHMDL-SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-N  136 (336)
T ss_dssp             HHHHHHHHHTTCSEEECTTCEE--CSCCCSCCCCBCCCEEEC-TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH-H
T ss_pred             HHHHHhhhhccceEEEcCCccc--cccchhhccCCCCCEEEc-cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH-H
Confidence            4555555567899988765422  223344667899999999 8776543  12 23478999999999998765543 3


Q ss_pred             hhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----------EEEeCC-CeeEEEEEec
Q 048811          196 LFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----------AVIMAP-NLQLIRIVDN  264 (318)
Q Consensus       196 ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----------~~i~~P-~L~~L~~~~~  264 (318)
                      .+..||+|++|++.+|....+         .  ....+.-..++|+.|++++|          .....| +|++|.++++
T Consensus       137 ~l~~~~~L~~L~L~~~~~l~~---------~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          137 TLAKNSNLVRLNLSGCSGFSE---------F--ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             HHTTCTTCSEEECTTCBSCCH---------H--HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             HHhcCCCCCEEECCCCCCCCH---------H--HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            456799999999999954211         0  01111114689999999988          123567 9999999998


Q ss_pred             cc--c----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecC
Q 048811          265 ML--M----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGG  315 (318)
Q Consensus       265 ~~--~----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~  315 (318)
                      ..  .    ...+.++++|+++.+..+....    . .....+..+++++.|.++++
T Consensus       206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~----~-~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK----N-DCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCC----G-GGGGGGGGCTTCCEEECTTC
T ss_pred             cccCCHHHHHHHHhhCCCCCEEeCCCCCcCC----H-HHHHHHhCCCCCCEeeCCCC
Confidence            42  1    2345679999999886553111    1 12335677899999999876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.51  E-value=2.2e-08  Score=82.75  Aligned_cols=102  Identities=16%  Similarity=0.210  Sum_probs=73.0

Q ss_pred             eEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC--CCCcCCCCCC
Q 048811          101 SIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD--PPDGVCFPQL  178 (318)
Q Consensus       101 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~L  178 (318)
                      .++.+.+....-..   +..   .....++++|+++.+..   ..+..+..+++|++|+| .++.+..  +.....+++|
T Consensus        45 ~L~~L~l~~n~i~~---l~~---l~~l~~L~~L~l~~n~~---~~~~~l~~l~~L~~L~l-~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           45 SLTYITLANINVTD---LTG---IEYAHNIKDLTINNIHA---TNYNPISGLSNLERLRI-MGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             TCCEEEEESSCCSC---CTT---GGGCTTCSEEEEESCCC---SCCGGGTTCTTCCEEEE-ECTTCBGGGSCCCTTCTTC
T ss_pred             CccEEeccCCCccC---hHH---HhcCCCCCEEEccCCCC---CcchhhhcCCCCCEEEe-ECCccCcccChhhcCCCCC
Confidence            48888887533221   111   12235899999998732   22345667899999999 7777654  4445589999


Q ss_pred             ceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          179 KILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       179 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ++|+|.++.+.+... ..+..+|.|++|++.+|..
T Consensus       115 ~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~  148 (197)
T 4ezg_A          115 TLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGA  148 (197)
T ss_dssp             CEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTB
T ss_pred             CEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCC
Confidence            999999999877543 4467899999999999983

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.47  E-value=2.4e-08  Score=88.59  Aligned_cols=79  Identities=15%  Similarity=0.132  Sum_probs=38.9

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|+++.+...  .++. +..+++|++|+| .++.+...+....+++|++|+|.++.+.+-  .. +..+|+|++|.
T Consensus        63 ~~L~~L~L~~n~i~--~~~~-~~~l~~L~~L~L-~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~  135 (308)
T 1h6u_A           63 NNLIGLELKDNQIT--DLAP-LKNLTKITELEL-SGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLY  135 (308)
T ss_dssp             TTCCEEECCSSCCC--CCGG-GTTCCSCCEEEC-CSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCC--CChh-HccCCCCCEEEc-cCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEE
Confidence            35555555544221  1222 344555666666 555444444444555566665555554432  12 44555566666


Q ss_pred             eeeecC
Q 048811          208 LTVLIQ  213 (318)
Q Consensus       208 l~~c~~  213 (318)
                      +.++..
T Consensus       136 l~~n~l  141 (308)
T 1h6u_A          136 LDLNQI  141 (308)
T ss_dssp             CCSSCC
T ss_pred             CCCCcc
Confidence            555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.47  E-value=4e-08  Score=85.89  Aligned_cols=166  Identities=14%  Similarity=0.059  Sum_probs=79.3

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccce-ecCC-C-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFR-FADP-P-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~-~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      ++++|+++...... ..|..+..+++|++|+| .++. +... + ....+++|++|+|.++.+.+. ....+..++.|++
T Consensus        57 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l-~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~  133 (285)
T 1ozn_A           57 NLTILWLHSNVLAR-IDAAAFTGLALLEQLDL-SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQY  133 (285)
T ss_dssp             TCCEEECCSSCCCE-ECTTTTTTCTTCCEEEC-CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCEEECCCCccce-eCHhhcCCccCCCEEeC-CCCCCccccCHHHhcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCE
Confidence            55666655432111 11334445566666666 4443 3322 1 223566666666666555432 2333555666666


Q ss_pred             eeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--E------EEeCCCeeEEEEEecccc---ceeecCC
Q 048811          206 LSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--A------VIMAPNLQLIRIVDNMLM---EYEVHEM  274 (318)
Q Consensus       206 L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--~------~i~~P~L~~L~~~~~~~~---~~~~~~~  274 (318)
                      |.+.++......+            ..+ -..++|+.|+++++  .      ....++|++|.+.++...   ...+.++
T Consensus       134 L~l~~n~l~~~~~------------~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  200 (285)
T 1ozn_A          134 LYLQDNALQALPD------------DTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (285)
T ss_dssp             EECCSSCCCCCCT------------TTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             EECCCCcccccCH------------hHh-ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence            6666665421100            000 02345566665555  1      112456666666665433   2234556


Q ss_pred             CCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          275 QSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       275 ~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                      ++|+.+++..+.....      ....+..+++++.|+++++.
T Consensus       201 ~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          201 GRLMTLYLFANNLSAL------PTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTCCEEECCSSCCSCC------CHHHHTTCTTCCEEECCSSC
T ss_pred             ccccEeeCCCCcCCcC------CHHHcccCcccCEEeccCCC
Confidence            6666666654422111      12345566666777666553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.46  E-value=3.8e-08  Score=88.40  Aligned_cols=161  Identities=11%  Similarity=0.106  Sum_probs=89.9

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|+++.+....  +| .+..+++|++|+| .++.+...+....+++|++|++.++..... +.. +..++.|++|.
T Consensus        88 ~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l-~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~-~~~-~~~l~~L~~L~  161 (347)
T 4fmz_A           88 VKLTNLYIGTNKITD--IS-ALQNLTNLRELYL-NEDNISDISPLANLTKMYSLNLGANHNLSD-LSP-LSNMTGLNYLT  161 (347)
T ss_dssp             TTCCEEECCSSCCCC--CG-GGTTCTTCSEEEC-TTSCCCCCGGGTTCTTCCEEECTTCTTCCC-CGG-GTTCTTCCEEE
T ss_pred             CcCCEEEccCCcccC--ch-HHcCCCcCCEEEC-cCCcccCchhhccCCceeEEECCCCCCccc-ccc-hhhCCCCcEEE
Confidence            355666555442221  22 2445556666666 555544444444566666666665533222 111 45666666666


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEeccccc-eeecCCCCceEE
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLME-YEVHEMQSIQQA  280 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~~-~~~~~~~sL~~l  280 (318)
                      +.+|.....              ..+ -..++|+.|++++|      .....++|++|.+.++.... ..+..+++|+++
T Consensus       162 l~~~~~~~~--------------~~~-~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L  226 (347)
T 4fmz_A          162 VTESKVKDV--------------TPI-ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSL  226 (347)
T ss_dssp             CCSSCCCCC--------------GGG-GGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred             ecCCCcCCc--------------hhh-ccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEE
Confidence            666654211              000 13467777877776      12245678888877765442 226678888888


Q ss_pred             EEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          281 TLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       281 ~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      .+..+.....       .. +..+++++.|+++++.+
T Consensus       227 ~l~~n~l~~~-------~~-~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          227 KIGNNKITDL-------SP-LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             ECCSSCCCCC-------GG-GTTCTTCCEEECCSSCC
T ss_pred             EccCCccCCC-------cc-hhcCCCCCEEECCCCcc
Confidence            8765532111       11 77889999999987754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.46  E-value=3.3e-08  Score=87.72  Aligned_cols=79  Identities=14%  Similarity=0.027  Sum_probs=62.7

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|++..+...  .+| .+..+++|++|+| .++.+...+....+++|++|+|.++.+.+-  . -+..++.|++|.
T Consensus        41 ~~L~~L~l~~~~i~--~l~-~~~~l~~L~~L~L-~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           41 DGITTLSAFGTGVT--TIE-GVQYLNNLIGLEL-KDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLD  113 (308)
T ss_dssp             HTCCEEECTTSCCC--CCT-TGGGCTTCCEEEC-CSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEE
T ss_pred             CCcCEEEeeCCCcc--Cch-hhhccCCCCEEEc-cCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEE
Confidence            48888888765332  344 4567899999999 888877765567899999999999988764  2 477899999999


Q ss_pred             eeeecC
Q 048811          208 LTVLIQ  213 (318)
Q Consensus       208 l~~c~~  213 (318)
                      +.+|..
T Consensus       114 l~~n~l  119 (308)
T 1h6u_A          114 LTSTQI  119 (308)
T ss_dssp             CTTSCC
T ss_pred             CCCCCC
Confidence            999987

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.46  E-value=6.3e-08  Score=90.45  Aligned_cols=83  Identities=18%  Similarity=0.146  Sum_probs=44.3

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      .++++|+++...... ..|..+..+++|++|+| .++.+...+.  ...+++|++|+|.++.+..- -...+..+|+|+.
T Consensus        99 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~  175 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLEL-FDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMR  175 (452)
T ss_dssp             TTCCEEECCSSCCCE-ECTTTTTTCTTCCEEEC-CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCccCC-cChhhccCcccCCEEEC-CCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccE
Confidence            356666665542211 11233445667777777 5555444332  23567777777766665432 1234556666666


Q ss_pred             eeeeeecC
Q 048811          206 LSLTVLIQ  213 (318)
Q Consensus       206 L~l~~c~~  213 (318)
                      |++.+|..
T Consensus       176 L~l~~~~~  183 (452)
T 3zyi_A          176 LDLGELKK  183 (452)
T ss_dssp             EECCCCTT
T ss_pred             EeCCCCCC
Confidence            66666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.45  E-value=9.5e-08  Score=91.95  Aligned_cols=105  Identities=16%  Similarity=0.170  Sum_probs=71.1

Q ss_pred             eEeEEEEEeeCCCCCCChhHHHHHHH--HCCceEEEEEEc-cCccccCCCCCccCCcccEEEecccceecCCC------C
Q 048811          101 SIHTFSLRSVNAIRRDRFPLWVSQAI--MRNVREMEIDII-QYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP------D  171 (318)
Q Consensus       101 ~l~~l~l~~~~~~~~~~~~~wl~~a~--~~~l~~L~l~~~-~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~------~  171 (318)
                      .++.+.+....     -.+..+....  .+++++|++..+ ......++.....|++|++|+| .+|.+....      .
T Consensus       106 ~L~~L~L~~~~-----~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L-~~~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          106 WLEEIRLKRMV-----VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL-RESDVDDVSGHWLSHF  179 (594)
T ss_dssp             TCCEEEEESCB-----CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC-TTCEEECCCGGGGGGS
T ss_pred             CCCeEEeeCcE-----EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC-cCCccCCcchHHHHHH
Confidence            38899887532     1122233222  368999999876 2222234444557899999999 887754421      1


Q ss_pred             cCCCCCCceeEeeEEE--eCcchhhhhhcCCcccceeeeeee
Q 048811          172 GVCFPQLKILQIYITH--PENRVTEKLFCSCPSLTELSLTVL  211 (318)
Q Consensus       172 ~~~~~~L~~L~L~~~~--~~~~~l~~ll~~cp~Le~L~l~~c  211 (318)
                      ...+++|++|+|.++.  +....+..++.+||+|++|++.+|
T Consensus       180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            2268899999998886  444457888888999999999887

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.44  E-value=2.5e-08  Score=88.68  Aligned_cols=182  Identities=15%  Similarity=0.044  Sum_probs=91.2

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceec-CCCC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFA-DPPD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      ..+++|+++....-...+|..+..+++|++|+| .++.+. ..|. ...+++|++|+|.++.+.+. +...+..+|+|++
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~  153 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI-THTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG  153 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEE-EEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEEC-cCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence            456666666321122244555556666666666 554443 2222 33566666666666655432 2334455666666


Q ss_pred             eeeeeecCCCCCC----------CceeeeccccceE-EEEEEcCccceEEEeee-E-------EEeCCCeeEEEEEeccc
Q 048811          206 LSLTVLIQPDDPP----------ANFIIQSTTLNTL-TFVVLFASLRGMSYHHR-A-------VIMAPNLQLIRIVDNML  266 (318)
Q Consensus       206 L~l~~c~~~~~~~----------~~~~i~s~~~~~~-~l~i~~~~L~~L~i~~~-~-------~i~~P~L~~L~~~~~~~  266 (318)
                      |++.++......+          ..+.++.-.+... .-.+...+|+.|+++++ +       .-..++|++|.+.++..
T Consensus       154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence            6666655410000          0000100000000 00001123677777766 1       12356777777777654


Q ss_pred             c--ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          267 M--EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       267 ~--~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      .  ...+..+++|+++.+..+....      .+...+..+++++.|.|+++.+
T Consensus       234 ~~~~~~~~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          234 AFDLGKVGLSKNLNGLDLRNNRIYG------TLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CCBGGGCCCCTTCCEEECCSSCCEE------CCCGGGGGCTTCCEEECCSSEE
T ss_pred             eeecCcccccCCCCEEECcCCcccC------cCChHHhcCcCCCEEECcCCcc
Confidence            3  2235567788887775443211      1234567888899998887643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.43  E-value=1.9e-08  Score=96.92  Aligned_cols=131  Identities=13%  Similarity=0.145  Sum_probs=73.2

Q ss_pred             CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeec---CCCCCCCceeeeccccceEEEEEEcCccceEEEeee--
Q 048811          174 CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLI---QPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--  248 (318)
Q Consensus       174 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~---~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--  248 (318)
                      ++++|++|+|.+..+.+..+..+..+||+|++|++.+|.   ...+.+..    .   ....+.-.+++|+.|+++.|  
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~----~---~~~~~~~~~~~L~~L~L~~~~~  448 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD----N---GVRSLLIGCKKLRRFAFYLRQG  448 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH----H---HHHHHHHHCTTCCEEEEECCGG
T ss_pred             hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH----H---HHHHHHHhCCCCCEEEEecCCC
Confidence            366666666655555544455555556666666666432   11110000    0   00000012577888887654  


Q ss_pred             ---------EEEeCCCeeEEEEEecccc----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecC
Q 048811          249 ---------AVIMAPNLQLIRIVDNMLM----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGG  315 (318)
Q Consensus       249 ---------~~i~~P~L~~L~~~~~~~~----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~  315 (318)
                               +.-..|+|++|.+.++...    ...+..+++|+++.|.-+..     ....+..+...+++++.|.|+++
T Consensus       449 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L~ls~n  523 (592)
T 3ogk_B          449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF-----SERAIAAAVTKLPSLRYLWVQGY  523 (592)
T ss_dssp             GCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC-----BHHHHHHHHHHCSSCCEEEEESC
T ss_pred             CccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC-----cHHHHHHHHHhcCccCeeECcCC
Confidence                     1223678888888776543    22345678888887765531     24455666777888888888776


Q ss_pred             c
Q 048811          316 V  316 (318)
Q Consensus       316 ~  316 (318)
                      .
T Consensus       524 ~  524 (592)
T 3ogk_B          524 R  524 (592)
T ss_dssp             B
T ss_pred             c
Confidence            5

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.40  E-value=3e-08  Score=87.28  Aligned_cols=61  Identities=18%  Similarity=0.043  Sum_probs=28.7

Q ss_pred             CccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          149 VYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       149 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      +..+++|+.|+| .++.+...+....+++|++|+|.++.+.+-   .-+..+|.|+.|.+.+|..
T Consensus        86 l~~l~~L~~L~l-~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l  146 (291)
T 1h6t_A           86 LANLKNLGWLFL-DENKVKDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKI  146 (291)
T ss_dssp             GTTCTTCCEEEC-CSSCCCCGGGGTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCC
T ss_pred             cccCCCCCEEEC-CCCcCCCChhhccCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcC
Confidence            334455555555 444444433334455555555555544432   1233455555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.40  E-value=7.6e-08  Score=89.57  Aligned_cols=74  Identities=11%  Similarity=0.120  Sum_probs=44.0

Q ss_pred             cCccceEEEeee--EE------EeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCC
Q 048811          237 FASLRGMSYHHR--AV------IMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVA  305 (318)
Q Consensus       237 ~~~L~~L~i~~~--~~------i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~  305 (318)
                      .++|+.|+++++  ..      ...++|++|.+.++...   ...+.++++|+.++|..+......      ...+..++
T Consensus       206 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~  279 (440)
T 3zyj_A          206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP------HDLFTPLH  279 (440)
T ss_dssp             CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC------TTTTSSCT
T ss_pred             CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC------hhHhcccc
Confidence            356677777666  11      13466777777666543   224566777777777544322111      23466778


Q ss_pred             ceeEEEeecCc
Q 048811          306 TTACLILSGGV  316 (318)
Q Consensus       306 ~v~~L~l~~~~  316 (318)
                      +++.|+|+++-
T Consensus       280 ~L~~L~L~~Np  290 (440)
T 3zyj_A          280 HLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEcCCCC
Confidence            88888887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.40  E-value=3.5e-08  Score=88.12  Aligned_cols=60  Identities=12%  Similarity=0.057  Sum_probs=30.0

Q ss_pred             CcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcch-hhhhhcCCcccceeeeeeecC
Q 048811          153 MTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRV-TEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ++|++|++ .++.+...+.  ...+++|++|+|.++.+.... ....+.+++.|++|.+.++..
T Consensus       121 ~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          121 KTLQELRV-HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             TTCCEEEC-CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             ccccEEEC-CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            45555555 4443332221  234566666666655554322 233455566666666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.39  E-value=1.1e-07  Score=85.64  Aligned_cols=62  Identities=18%  Similarity=0.161  Sum_probs=27.7

Q ss_pred             cCCcccEEEecccceecCCCC---cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          151 SSMTLEVLRLHTAFRFADPPD---GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       151 ~~~~L~~L~L~~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .+++|++|+| .++.+...+.   ...+++|++|+|.++..........+.+++.|++|++.++..
T Consensus       122 ~l~~L~~L~L-~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          122 PLSSLTFLNL-LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             TCTTCSEEEC-TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCccCCEEEC-CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            3455555555 4444433322   224555555555554211111122344555555555555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.39  E-value=5.6e-09  Score=95.50  Aligned_cols=175  Identities=10%  Similarity=0.069  Sum_probs=105.7

Q ss_pred             CCceEEEEEEccCc--cccCCCCC-------ccCCcccEEEecccceecCC-----C-CcCCCCCCceeEeeEEEeCcch
Q 048811          128 RNVREMEIDIIQYA--PMQLPGCV-------YSSMTLEVLRLHTAFRFADP-----P-DGVCFPQLKILQIYITHPENRV  192 (318)
Q Consensus       128 ~~l~~L~l~~~~~~--~~~lp~~~-------~~~~~L~~L~L~~~~~~~~~-----~-~~~~~~~L~~L~L~~~~~~~~~  192 (318)
                      ++++.|+++.+...  ...+|..+       ..+++|++|+| .++.+...     + ....+++|++|+|.++.+.+..
T Consensus        60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L-s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~  138 (386)
T 2ca6_A           60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL-SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  138 (386)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC-CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC-CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence            46787777665211  11223222       46678888888 66665441     1 1236788888888888775443


Q ss_pred             ---hhhhhcCC---------cccceeeeeeecCCCCCCCceeeeccccceEEE--EE-EcCccceEEEeee-EE------
Q 048811          193 ---TEKLFCSC---------PSLTELSLTVLIQPDDPPANFIIQSTTLNTLTF--VV-LFASLRGMSYHHR-AV------  250 (318)
Q Consensus       193 ---l~~ll~~c---------p~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l--~i-~~~~L~~L~i~~~-~~------  250 (318)
                         +...+..+         |.|++|.+.+|...+.            ....+  .+ ..++|+.|.+++| +.      
T Consensus       139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~------------~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~  206 (386)
T 2ca6_A          139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG------------SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH  206 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG------------GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH------------HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH
Confidence               44444445         8888888888876211            11110  01 3468888888887 11      


Q ss_pred             ------EeCCCeeEEEEEecccc-------ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcC--CCceeEEEeecC
Q 048811          251 ------IMAPNLQLIRIVDNMLM-------EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEG--VATTACLILSGG  315 (318)
Q Consensus       251 ------i~~P~L~~L~~~~~~~~-------~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~--l~~v~~L~l~~~  315 (318)
                            ...|+|++|.++++...       ...+..+++|+.+.+..+...  ......+...+..  +++++.|.|+++
T Consensus       207 l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~--~~~~~~l~~~l~~~~~~~L~~L~L~~n  284 (386)
T 2ca6_A          207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS--ARGAAAVVDAFSKLENIGLQTLRLQYN  284 (386)
T ss_dssp             HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC--HHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred             HHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc--hhhHHHHHHHHhhccCCCeEEEECcCC
Confidence                  14578999998887652       224567888998887544311  1112334566644  889999999887


Q ss_pred             cC
Q 048811          316 VL  317 (318)
Q Consensus       316 ~~  317 (318)
                      .+
T Consensus       285 ~i  286 (386)
T 2ca6_A          285 EI  286 (386)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.38  E-value=5.8e-07  Score=72.00  Aligned_cols=84  Identities=23%  Similarity=0.204  Sum_probs=52.1

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|+++.+......+|..+..+++|+.|+| .++.+...+....+++|++|+|.++.+.+. +..++..+|.|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l-~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSL-INVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEE-ESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeC-cCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEe
Confidence            356666666654332355655566677777777 666555444444677777777777766553 445555677777777


Q ss_pred             eeeecC
Q 048811          208 LTVLIQ  213 (318)
Q Consensus       208 l~~c~~  213 (318)
                      +.+|..
T Consensus       102 Ls~N~l  107 (168)
T 2ell_A          102 LSGNKL  107 (168)
T ss_dssp             CBSSSC
T ss_pred             ccCCcc
Confidence            777755

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.38  E-value=5.1e-08  Score=90.77  Aligned_cols=60  Identities=28%  Similarity=0.263  Sum_probs=28.5

Q ss_pred             cCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeec
Q 048811          151 SSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLI  212 (318)
Q Consensus       151 ~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  212 (318)
                      .+++|++|+| .++.+...+.  ...+++|++|+|.++.+..- -...+..+|+|++|++.+|.
T Consensus       110 ~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~  171 (440)
T 3zyj_A          110 GLANLNTLEL-FDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELK  171 (440)
T ss_dssp             TCSSCCEEEC-CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCT
T ss_pred             CCccCCEEEC-CCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCC
Confidence            3455555655 4444433322  23455555555555544322 12234455555555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.38  E-value=7.7e-08  Score=93.01  Aligned_cols=17  Identities=18%  Similarity=0.085  Sum_probs=10.7

Q ss_pred             HhcCCCceeEEEeecCc
Q 048811          300 LIEGVATTACLILSGGV  316 (318)
Q Consensus       300 ~l~~l~~v~~L~l~~~~  316 (318)
                      .+..+++++.|.++++.
T Consensus       471 ~~~~l~~L~~L~Ls~n~  487 (606)
T 3t6q_A          471 SLQTLGRLEILVLSFCD  487 (606)
T ss_dssp             GGGGCTTCCEEECTTSC
T ss_pred             hhccCCCccEEECCCCc
Confidence            35566677777666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.37  E-value=3.1e-07  Score=82.82  Aligned_cols=166  Identities=14%  Similarity=0.112  Sum_probs=91.5

Q ss_pred             CceEEEEEEccCccccCCC-CCccCCcccEEEecccceecCC-C-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          129 NVREMEIDIIQYAPMQLPG-CVYSSMTLEVLRLHTAFRFADP-P-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      ++++|+++.....  .+|. .+..+++|++|+| .++.+... + ....+++|++|+|.++.+.+- -...+.++++|++
T Consensus        53 ~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  128 (353)
T 2z80_A           53 AVKSLDLSNNRIT--YISNSDLQRCVNLQALVL-TSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTF  128 (353)
T ss_dssp             TCCEEECTTSCCC--EECTTTTTTCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSE
T ss_pred             cCcEEECCCCcCc--ccCHHHhccCCCCCEEEC-CCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCE
Confidence            5666666554222  2333 4456677777777 66554433 2 234677777777777766542 2334567777777


Q ss_pred             eeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee---EEE------eCCCeeEEEEEecccc---ceeecC
Q 048811          206 LSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR---AVI------MAPNLQLIRIVDNMLM---EYEVHE  273 (318)
Q Consensus       206 L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~---~~i------~~P~L~~L~~~~~~~~---~~~~~~  273 (318)
                      |++.++....-+            ....--..++|+.|+++++   ..+      ..++|++|.+.++...   ...+++
T Consensus       129 L~L~~n~l~~l~------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  196 (353)
T 2z80_A          129 LNLLGNPYKTLG------------ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS  196 (353)
T ss_dssp             EECTTCCCSSSC------------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred             EECCCCCCcccC------------chhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence            777777552110            0000013456777777665   111      2456777777776543   224556


Q ss_pred             CCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          274 MQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       274 ~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                      +++|+++.+..+..      ...-..++..+++++.|+++++.
T Consensus       197 l~~L~~L~l~~n~l------~~~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          197 IQNVSHLILHMKQH------ILLLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             CSEEEEEEEECSCS------TTHHHHHHHHTTTEEEEEEESCB
T ss_pred             cccCCeecCCCCcc------ccchhhhhhhcccccEEECCCCc
Confidence            67777776654421      11113345556777777777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.37  E-value=8.6e-08  Score=85.18  Aligned_cols=202  Identities=10%  Similarity=0.094  Sum_probs=120.7

Q ss_pred             eEeEEEEEe-eCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceec-CCCC-cCCCCC
Q 048811          101 SIHTFSLRS-VNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFA-DPPD-GVCFPQ  177 (318)
Q Consensus       101 ~l~~l~l~~-~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~-~~~~~~  177 (318)
                      .++.+.+.. .....  .+...+  ....++++|+++..... ..+|..+..+++|++|+| .++.+. ..|. ...+++
T Consensus        77 ~L~~L~L~~~n~l~~--~~p~~l--~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L-s~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           77 YLNFLYIGGINNLVG--PIPPAI--AKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDF-SYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             TCSEEEEEEETTEES--CCCGGG--GGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEEC-CSSEEESCCCGGGGGCTT
T ss_pred             CCCeeeCCCCCcccc--cCChhH--hcCCCCCEEECcCCeeC-CcCCHHHhCCCCCCEEeC-CCCccCCcCChHHhcCCC
Confidence            488888873 22111  011111  12358999999886432 256677778899999999 777665 3343 447899


Q ss_pred             CceeEeeEEEeCcchhhhhhcCCc-ccceeeeeeecCCCCCCC---ceeeeccccceEEEE------E-EcCccceEEEe
Q 048811          178 LKILQIYITHPENRVTEKLFCSCP-SLTELSLTVLIQPDDPPA---NFIIQSTTLNTLTFV------V-LFASLRGMSYH  246 (318)
Q Consensus       178 L~~L~L~~~~~~~~~l~~ll~~cp-~Le~L~l~~c~~~~~~~~---~~~i~s~~~~~~~l~------i-~~~~L~~L~i~  246 (318)
                      |++|+|.++.+.+. +..-+..++ .|+.|++.++......+.   .+.+..-.+....+.      + ..++|+.|+++
T Consensus       151 L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  229 (313)
T 1ogq_A          151 LVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             CCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             CCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence            99999988877533 333455666 889999888764211111   111111111111111      1 24789999999


Q ss_pred             ee-E------EEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          247 HR-A------VIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       247 ~~-~------~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                      ++ +      ....++|++|.++++...   ...+.++++|+.+++..+......      .. ...+++++.|.+.++.
T Consensus       230 ~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i------p~-~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI------PQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC------CC-STTGGGSCGGGTCSSS
T ss_pred             CCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC------CC-CccccccChHHhcCCC
Confidence            87 1      124589999999988654   345778999999999765432110      01 1455666666666553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.37  E-value=3.7e-07  Score=86.56  Aligned_cols=176  Identities=11%  Similarity=0.144  Sum_probs=120.4

Q ss_pred             HHHHHHHH-CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC--CCCcCCCCCCceeEeeEEEeCcch-hhh
Q 048811          120 LWVSQAIM-RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD--PPDGVCFPQLKILQIYITHPENRV-TEK  195 (318)
Q Consensus       120 ~wl~~a~~-~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~-l~~  195 (318)
                      .++..... ..++.|+++........++   ..+++|++|+| .++.+..  +.....+++|++|+|.++.+.+-. +..
T Consensus       293 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~l~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  368 (520)
T 2z7x_B          293 SYIYEIFSNMNIKNFTVSGTRMVHMLCP---SKISPFLHLDF-SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE  368 (520)
T ss_dssp             HHHHHHHHTCCCSEEEEESSCCCCCCCC---SSCCCCCEEEC-CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH
T ss_pred             hhhhcccccCceeEEEcCCCccccccch---hhCCcccEEEe-ECCccChhhhhhhccCCCCCEEEccCCccCccccchH
Confidence            45555433 4689999887643332222   46789999999 8887665  234458999999999999987633 566


Q ss_pred             hhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEE-----Ee-CCCeeEEEEEecccc--
Q 048811          196 LFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAV-----IM-APNLQLIRIVDNMLM--  267 (318)
Q Consensus       196 ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~-----i~-~P~L~~L~~~~~~~~--  267 (318)
                      .+..++.|+.|++.++...+.      +     ....+ ...++|+.|+++++-.     .. .++|++|.++++...  
T Consensus       369 ~~~~l~~L~~L~Ls~N~l~~~------l-----~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~i  436 (520)
T 2z7x_B          369 MTTQMKSLQQLDISQNSVSYD------E-----KKGDC-SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSI  436 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCBCC------G-----GGCSC-CCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCC
T ss_pred             HHhhCCCCCEEECCCCcCCcc------c-----ccchh-ccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccccc
Confidence            788999999999999987321      0     00000 1347899999988811     01 278999999888654  


Q ss_pred             ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          268 EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       268 ~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      ...+..+++|+++.+..+....-+      ...+..+++++.|+++++.+
T Consensus       437 p~~~~~l~~L~~L~L~~N~l~~l~------~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          437 PKQVVKLEALQELNVASNQLKSVP------DGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCB
T ss_pred             chhhhcCCCCCEEECCCCcCCccC------HHHhccCCcccEEECcCCCC
Confidence            223458899999888766432211      11577889999999988754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.37  E-value=1.3e-08  Score=89.86  Aligned_cols=141  Identities=14%  Similarity=0.152  Sum_probs=72.6

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC---CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP---DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      .++++|+++....  ..+|..+..+++|++|+| .++.+...+   ....+++|++|+|.++.+... ....+.+++.|+
T Consensus        78 ~~L~~L~Ls~n~i--~~l~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~  153 (306)
T 2z66_A           78 TSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDF-QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLE  153 (306)
T ss_dssp             SCCCEEECCSCSE--EEEEEEEETCTTCCEEEC-TTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCC
T ss_pred             cccCEEECCCCcc--ccChhhcCCCCCCCEEEC-CCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCC
Confidence            4677776665422  134444555667777777 555544432   233566777777766654332 234455667777


Q ss_pred             eeeeeeecCCCCCCCceeeeccccceEEEEE-EcCccceEEEeee--EE------EeCCCeeEEEEEecccc---ceeec
Q 048811          205 ELSLTVLIQPDDPPANFIIQSTTLNTLTFVV-LFASLRGMSYHHR--AV------IMAPNLQLIRIVDNMLM---EYEVH  272 (318)
Q Consensus       205 ~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i-~~~~L~~L~i~~~--~~------i~~P~L~~L~~~~~~~~---~~~~~  272 (318)
                      +|.+.++...+.             ...-.+ ..++|+.|+++++  ..      -..|+|++|.++++...   ...+.
T Consensus       154 ~L~l~~n~l~~~-------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  220 (306)
T 2z66_A          154 VLKMAGNSFQEN-------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK  220 (306)
T ss_dssp             EEECTTCEEGGG-------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred             EEECCCCccccc-------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence            777766654110             000001 2355666666655  11      12356666666665432   12344


Q ss_pred             CCCCceEEEEEEE
Q 048811          273 EMQSIQQATLDLQ  285 (318)
Q Consensus       273 ~~~sL~~l~l~~~  285 (318)
                      .+++|+.+.+..+
T Consensus       221 ~l~~L~~L~L~~N  233 (306)
T 2z66_A          221 CLNSLQVLDYSLN  233 (306)
T ss_dssp             TCTTCCEEECTTS
T ss_pred             CcccCCEeECCCC
Confidence            5666666655433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.37  E-value=2.1e-07  Score=87.21  Aligned_cols=59  Identities=14%  Similarity=0.090  Sum_probs=36.1

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCc
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPEN  190 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  190 (318)
                      .++++|+++.+...  .++. +..+++|++|+| .++.+...+....+++|++|+|.++.+.+
T Consensus        90 ~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~L-~~n~l~~~~~~~~l~~L~~L~l~~n~l~~  148 (466)
T 1o6v_A           90 TKLVDILMNNNQIA--DITP-LANLTNLTGLTL-FNNQITDIDPLKNLTNLNRLELSSNTISD  148 (466)
T ss_dssp             TTCCEEECCSSCCC--CCGG-GTTCTTCCEEEC-CSSCCCCCGGGTTCTTCSEEEEEEEEECC
T ss_pred             ccCCEEECCCCccc--cChh-hcCCCCCCEEEC-CCCCCCCChHHcCCCCCCEEECCCCccCC
Confidence            46777776654222  2222 556677777777 66665555445567777777777777655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.37  E-value=1.3e-07  Score=83.43  Aligned_cols=166  Identities=14%  Similarity=0.132  Sum_probs=84.4

Q ss_pred             CceEEEEEEccCccccCCCCC-ccCCcccEEEecccceecCC----CCcCCCCCCceeEeeEEEeCcchhhhhhcCCccc
Q 048811          129 NVREMEIDIIQYAPMQLPGCV-YSSMTLEVLRLHTAFRFADP----PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSL  203 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L  203 (318)
                      ++++|+++.....  .+|..+ ..+++|++|+| .++.+...    .....+++|++|+|.++.+..  +..-+..++.|
T Consensus        29 ~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L  103 (306)
T 2z66_A           29 SATRLELESNKLQ--SLPHGVFDKLTQLTKLSL-SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL  103 (306)
T ss_dssp             TCCEEECCSSCCC--CCCTTTTTTCTTCSEEEC-CSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred             CCCEEECCCCccC--ccCHhHhhccccCCEEEC-CCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence            5566655544221  344432 34566666666 44433211    112245666666666655432  22224556666


Q ss_pred             ceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--E------EEeCCCeeEEEEEecccc----ceee
Q 048811          204 TELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--A------VIMAPNLQLIRIVDNMLM----EYEV  271 (318)
Q Consensus       204 e~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--~------~i~~P~L~~L~~~~~~~~----~~~~  271 (318)
                      ++|++.++.......           ...+ ...++|+.|+++++  .      .-..++|++|.+.++...    ...+
T Consensus       104 ~~L~l~~n~l~~~~~-----------~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  171 (306)
T 2z66_A          104 EHLDFQHSNLKQMSE-----------FSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  171 (306)
T ss_dssp             CEEECTTSEEESSTT-----------TTTT-TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             CEEECCCCccccccc-----------chhh-hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence            666666654311100           0000 02356777777665  1      113467777777666432    2345


Q ss_pred             cCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          272 HEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       272 ~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      ..+++|+.+.+..+....      .....+..+++++.|.++++.+
T Consensus       172 ~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~N~l  211 (306)
T 2z66_A          172 TELRNLTFLDLSQCQLEQ------LSPTAFNSLSSLQVLNMSHNNF  211 (306)
T ss_dssp             TTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTSCC
T ss_pred             hhCcCCCEEECCCCCcCC------cCHHHhcCCCCCCEEECCCCcc
Confidence            667777777765432111      0123466778888888887654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.37  E-value=6.3e-08  Score=83.90  Aligned_cols=136  Identities=16%  Similarity=0.135  Sum_probs=63.5

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      ..++.|+++.+...  .+| .+..+++|+.|+| .++.+...+....+++|++|+|.++.+.+-  ..+. . +.|+.|.
T Consensus        41 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~L-~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l--~~~~-~-~~L~~L~  112 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQ--SLA-GMQFFTNLKELHL-SHNQISDLSPLKDLTKLEELSVNRNRLKNL--NGIP-S-ACLSRLF  112 (263)
T ss_dssp             TTCSEEECTTSCCC--CCT-TGGGCTTCCEEEC-CSSCCCCCGGGTTCSSCCEEECCSSCCSCC--TTCC-C-SSCCEEE
T ss_pred             CcCcEEECcCCCcc--cch-HHhhCCCCCEEEC-CCCccCCChhhccCCCCCEEECCCCccCCc--Cccc-c-CcccEEE
Confidence            35555555544222  223 3344556666666 555544443344566666666666655442  1211 1 5666666


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc-ceeecCCCCceEE
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQA  280 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l  280 (318)
                      +.++...+              ...+ -..++|+.|+++++      ..-..++|++|.++++... ...+..+++|+.+
T Consensus       113 L~~N~l~~--------------~~~l-~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L  177 (263)
T 1xeu_A          113 LDNNELRD--------------TDSL-IHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI  177 (263)
T ss_dssp             CCSSCCSB--------------SGGG-TTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEE
T ss_pred             ccCCccCC--------------Chhh-cCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEE
Confidence            66665411              0000 02345555555554      1113355555555554432 1234445555555


Q ss_pred             EEEEEe
Q 048811          281 TLDLQH  286 (318)
Q Consensus       281 ~l~~~~  286 (318)
                      .+..+.
T Consensus       178 ~l~~N~  183 (263)
T 1xeu_A          178 DLTGQK  183 (263)
T ss_dssp             EEEEEE
T ss_pred             eCCCCc
Confidence            555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.36  E-value=3.2e-07  Score=87.54  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=42.4

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      .+++|+++..... ...|..+..+++|++|+| .++.+...+  ....+++|++|+|.++.+.+. ....+.++++|++|
T Consensus        27 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  103 (549)
T 2z81_A           27 AMKSLDLSFNKIT-YIGHGDLRACANLQVLIL-KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYL  103 (549)
T ss_dssp             TCCEEECCSSCCC-EECSSTTSSCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEE
T ss_pred             CccEEECcCCccC-ccChhhhhcCCcccEEEC-CCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEE
Confidence            5566665554221 112334445566666666 555443322  233566666666666655433 22334566666666


Q ss_pred             eeeeecC
Q 048811          207 SLTVLIQ  213 (318)
Q Consensus       207 ~l~~c~~  213 (318)
                      ++.++..
T Consensus       104 ~Ls~n~l  110 (549)
T 2z81_A          104 NLMGNPY  110 (549)
T ss_dssp             ECTTCCC
T ss_pred             ECCCCcc
Confidence            6666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.36  E-value=3.6e-08  Score=86.17  Aligned_cols=167  Identities=14%  Similarity=0.082  Sum_probs=111.8

Q ss_pred             CCceEEEEEEccCccccCC-CCCccCCcccEEEecccceecCC-C-CcCCCCCCceeEeeEEE-eCcchhhhhhcCCccc
Q 048811          128 RNVREMEIDIIQYAPMQLP-GCVYSSMTLEVLRLHTAFRFADP-P-DGVCFPQLKILQIYITH-PENRVTEKLFCSCPSL  203 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~-~-~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~L  203 (318)
                      ..+++|+++.....  .++ ..+..+++|++|+| .++.+... + ....+++|++|+|.++. +... ....+..+++|
T Consensus        32 ~~l~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L  107 (285)
T 1ozn_A           32 AASQRIFLHGNRIS--HVPAASFRACRNLTILWL-HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRL  107 (285)
T ss_dssp             TTCSEEECTTSCCC--EECTTTTTTCTTCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTC
T ss_pred             CCceEEEeeCCcCC--ccCHHHcccCCCCCEEEC-CCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCC
Confidence            47888887665322  233 34567789999999 77655433 2 34578999999999886 4332 24457789999


Q ss_pred             ceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----E----EEeCCCeeEEEEEecccc---ceeec
Q 048811          204 TELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----A----VIMAPNLQLIRIVDNMLM---EYEVH  272 (318)
Q Consensus       204 e~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~----~i~~P~L~~L~~~~~~~~---~~~~~  272 (318)
                      ++|++.++......+            ..+ -..++|+.|+++++    +    .-..++|++|.+.++...   ...+.
T Consensus       108 ~~L~l~~n~l~~~~~------------~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  174 (285)
T 1ozn_A          108 HTLHLDRCGLQELGP------------GLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR  174 (285)
T ss_dssp             CEEECTTSCCCCCCT------------TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CEEECCCCcCCEECH------------hHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence            999999987631100            000 13478999999887    1    224688999999988654   22467


Q ss_pred             CCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          273 EMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       273 ~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      .+++|+.+.+..+.....      ....+..+++++.|+++++.+
T Consensus       175 ~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          175 GLHSLDRLLLHQNRVAHV------HPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             TCTTCCEEECCSSCCCEE------CTTTTTTCTTCCEEECCSSCC
T ss_pred             CccccCEEECCCCccccc------CHhHccCcccccEeeCCCCcC
Confidence            789999998865532111      134467889999999998754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.34  E-value=1.7e-07  Score=81.35  Aligned_cols=166  Identities=16%  Similarity=0.180  Sum_probs=114.3

Q ss_pred             CCceEEEEEEccCccccCCC-CCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          128 RNVREMEIDIIQYAPMQLPG-CVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      .++++|+++.....  .+|. .+..+++|++|+| .++.+...+.  ...+++|++|+|.++.+..- -...+..++.|+
T Consensus        37 ~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l-~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~  112 (270)
T 2o6q_A           37 ADTKKLDLQSNKLS--SLPSKAFHRLTKLRLLYL-NDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLA  112 (270)
T ss_dssp             TTCSEEECCSSCCS--CCCTTSSSSCTTCCEEEC-CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCC
T ss_pred             CCCCEEECcCCCCC--eeCHHHhcCCCCCCEEEC-CCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCC
Confidence            47888888765322  3443 4567789999999 7777665543  24789999999998877643 234567899999


Q ss_pred             eeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecC
Q 048811          205 ELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHE  273 (318)
Q Consensus       205 ~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~  273 (318)
                      +|.+.++......+..            + -..++|+.|+++++        ..-..++|++|.+.++...   ...+.+
T Consensus       113 ~L~l~~n~l~~~~~~~------------~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  179 (270)
T 2o6q_A          113 ELRLDRNQLKSLPPRV------------F-DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK  179 (270)
T ss_dssp             EEECCSSCCCCCCTTT------------T-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             EEECCCCccCeeCHHH------------h-CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc
Confidence            9999998763210000            0 13478999999887        1224688999999887654   224677


Q ss_pred             CCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          274 MQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       274 ~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                      +++|+.+.+.-+....-+      ...+..+++++.|.|+++-
T Consensus       180 l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          180 LTELKTLKLDNNQLKRVP------EGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSSC
T ss_pred             CCCcCEEECCCCcCCcCC------HHHhccccCCCEEEecCCC
Confidence            899999988655322111      2346788999999998875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.34  E-value=1.5e-07  Score=90.03  Aligned_cols=55  Identities=18%  Similarity=0.269  Sum_probs=31.8

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEE
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITH  187 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~  187 (318)
                      .++++|++......  .+|..+..+ +|++|++ .++.+...|. ..+++|++|++.++.
T Consensus       282 ~~L~~L~l~~~~l~--~l~~~~~~~-~L~~L~l-~~n~~~~l~~-~~l~~L~~L~l~~n~  336 (570)
T 2z63_A          282 TNVSSFSLVSVTIE--RVKDFSYNF-GWQHLEL-VNCKFGQFPT-LKLKSLKRLTFTSNK  336 (570)
T ss_dssp             TTCSEEEEESCEEC--SCCBCCSCC-CCSEEEE-ESCBCSSCCB-CBCSSCCEEEEESCB
T ss_pred             CcccEEEecCccch--hhhhhhccC-CccEEee-ccCcccccCc-ccccccCEEeCcCCc
Confidence            47888888765322  466666666 7777777 6665554333 244555555554444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.34  E-value=1.2e-07  Score=81.38  Aligned_cols=158  Identities=15%  Similarity=0.097  Sum_probs=83.0

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      .++.|+++...... ..+..+..+++|++|+| .++.+...+.  ...+++|++|+|.++.+... ....+.+++.|++|
T Consensus        36 ~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  112 (251)
T 3m19_A           36 DTEKLDLQSTGLAT-LSDATFRGLTKLTWLNL-DYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKL  112 (251)
T ss_dssp             TCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCEEEccCCCcCc-cCHhHhcCcccCCEEEC-CCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEE
Confidence            56666665542211 11223445677777777 6665544432  34677777777777766532 23445667777777


Q ss_pred             eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----E----EEeCCCeeEEEEEecccc---ceeecCCC
Q 048811          207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----A----VIMAPNLQLIRIVDNMLM---EYEVHEMQ  275 (318)
Q Consensus       207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~----~i~~P~L~~L~~~~~~~~---~~~~~~~~  275 (318)
                      .+.++....-.       ...     + -..++|+.|+++++    +    .-..++|++|.+.++...   ...+.+++
T Consensus       113 ~L~~N~l~~~~-------~~~-----~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  179 (251)
T 3m19_A          113 YLGGNQLKSLP-------SGV-----F-DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG  179 (251)
T ss_dssp             ECCSSCCCCCC-------TTT-----T-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             EcCCCcCCCcC-------hhH-----h-ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence            77777652110       000     0 02356666666665    0    112356677776666443   12345566


Q ss_pred             CceEEEEEEEeccCCCCChhhHHHHhc
Q 048811          276 SIQQATLDLQHWESDTVDPQRARNLIE  302 (318)
Q Consensus       276 sL~~l~l~~~~~~~~~~~~~~~~~~l~  302 (318)
                      +|+.+.+..+.+..+..+...+..++.
T Consensus       180 ~L~~L~l~~N~~~c~~~~~~~l~~~~~  206 (251)
T 3m19_A          180 KLQTITLFGNQFDCSRCEILYLSQWIR  206 (251)
T ss_dssp             TCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred             CCCEEEeeCCceeCCccccHHHHHHHH
Confidence            677666665544333233334444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.34  E-value=3.7e-08  Score=95.50  Aligned_cols=136  Identities=15%  Similarity=0.099  Sum_probs=69.3

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|+++.+...  .++. +..+++|+.|+| .++.+...+....+++|++|+|.++.+.+-  . -+..||.|+.|.
T Consensus        65 ~~L~~L~Ls~N~l~--~~~~-l~~l~~L~~L~L-s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~  137 (605)
T 1m9s_A           65 PNVTKLFLNGNKLT--DIKP-LTNLKNLGWLFL-DENKIKDLSSLKDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLY  137 (605)
T ss_dssp             TTCCEEECTTSCCC--CCGG-GGGCTTCCEEEC-CSSCCCCCTTSTTCTTCCEEECTTSCCCCC--G-GGGGCTTCSEEE
T ss_pred             CCCCEEEeeCCCCC--CChh-hccCCCCCEEEC-cCCCCCCChhhccCCCCCEEEecCCCCCCC--c-cccCCCccCEEE
Confidence            45666666544221  1222 445566666666 666555555555666666666666665542  1 245566666666


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc-ceeecCCCCceEE
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQA  280 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l  280 (318)
                      |.+|....              ...+ -..++|+.|++++|      .....|+|+.|.++++... ...+..+++|+.+
T Consensus       138 Ls~N~l~~--------------l~~l-~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L  202 (605)
T 1m9s_A          138 LGNNKITD--------------ITVL-SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL  202 (605)
T ss_dssp             CCSSCCCC--------------CGGG-GSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEE
T ss_pred             CCCCccCC--------------chhh-cccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEE
Confidence            66665521              0000 02355666666555      1113455555555554332 1234455555555


Q ss_pred             EEEEE
Q 048811          281 TLDLQ  285 (318)
Q Consensus       281 ~l~~~  285 (318)
                      .|..+
T Consensus       203 ~L~~N  207 (605)
T 1m9s_A          203 ELFSQ  207 (605)
T ss_dssp             ECCSE
T ss_pred             EccCC
Confidence            55544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.32  E-value=7.2e-08  Score=77.97  Aligned_cols=70  Identities=13%  Similarity=0.089  Sum_probs=46.4

Q ss_pred             cCCCCCccCCcccEEEecccceecCC--CCcCCCCCCceeEeeEEE-eCcchhhhhhcC---CcccceeeeeeecCC
Q 048811          144 QLPGCVYSSMTLEVLRLHTAFRFADP--PDGVCFPQLKILQIYITH-PENRVTEKLFCS---CPSLTELSLTVLIQP  214 (318)
Q Consensus       144 ~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~l~~c~~~  214 (318)
                      .+|..-.....|++|+| ++|.+.+.  ....+|++|++|+|.+|. ++|.++..+-..   ||.|++|+|++|...
T Consensus        52 ~LP~~~~~~~~L~~LDL-s~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDA-TDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             GSCCCSTTCCCEEEEEE-ESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             cCCcccCCCceEeEEeC-cCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence            45554334457888888 77764332  112378888888888885 555557776653   778888888888754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.32  E-value=8.7e-08  Score=89.47  Aligned_cols=165  Identities=14%  Similarity=0.078  Sum_probs=105.2

Q ss_pred             CCceEEEEEEccCccccCCCC-CccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          128 RNVREMEIDIIQYAPMQLPGC-VYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      .++++|+++....  ..+|.. +..+++|++|+| .++.+...+  ....+++|++|+|.++.....--...+.++++|+
T Consensus       123 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L-~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~  199 (452)
T 3zyi_A          123 ASLNTLELFDNWL--TVIPSGAFEYLSKLRELWL-RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK  199 (452)
T ss_dssp             TTCCEEECCSSCC--SBCCTTTSSSCTTCCEEEC-CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred             ccCCEEECCCCcC--CccChhhhcccCCCCEEEC-CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence            4789998877632  245544 445789999999 777665443  3447899999999875433322234577899999


Q ss_pred             eeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecC
Q 048811          205 ELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHE  273 (318)
Q Consensus       205 ~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~  273 (318)
                      .|++.++...+.              ..+ -..++|+.|+++++        .....++|++|.+.++...   ...+.+
T Consensus       200 ~L~L~~n~l~~~--------------~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  264 (452)
T 3zyi_A          200 YLNLGMCNIKDM--------------PNL-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG  264 (452)
T ss_dssp             EEECTTSCCSSC--------------CCC-TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             EEECCCCccccc--------------ccc-cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence            999999877311              110 13467777777776        1123567788877776543   224566


Q ss_pred             CCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          274 MQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       274 ~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                      +++|+.++|..+....-.      ...+..+++++.|+|+++-
T Consensus       265 l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          265 LASLVELNLAHNNLSSLP------HDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CTTCCEEECCSSCCSCCC------TTSSTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCcCCccC------hHHhccccCCCEEEccCCC
Confidence            777887777654322111      2345667777888777663

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.32  E-value=8.6e-07  Score=80.93  Aligned_cols=176  Identities=15%  Similarity=0.144  Sum_probs=93.3

Q ss_pred             CceEEEEEEccCccccCC-CCCccCCcccEEEecccceecCCCCc--CCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          129 NVREMEIDIIQYAPMQLP-GCVYSSMTLEVLRLHTAFRFADPPDG--VCFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      ++++|+++....  ..++ ..+..+++|++|+| .++.+...|..  ..+++|++|+|.++.+... ....+..++.|++
T Consensus        94 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L-~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  169 (390)
T 3o6n_A           94 TIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQN  169 (390)
T ss_dssp             TCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCE
T ss_pred             CcCEEECCCCCC--CcCCHHHhcCCCCCCEEEC-CCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCE
Confidence            555555554321  1222 23345566666666 55555544432  3566677777666655432 2233556677777


Q ss_pred             eeeeeecCCCCCC------CceeeeccccceEEEEEEcCccceEEEeee-----EEEeCCCeeEEEEEecccc-ceeecC
Q 048811          206 LSLTVLIQPDDPP------ANFIIQSTTLNTLTFVVLFASLRGMSYHHR-----AVIMAPNLQLIRIVDNMLM-EYEVHE  273 (318)
Q Consensus       206 L~l~~c~~~~~~~------~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~-----~~i~~P~L~~L~~~~~~~~-~~~~~~  273 (318)
                      |.+.++.......      ..+.++...  ...+. ..++|+.|+++++     .....++|++|.+.++... ...+++
T Consensus       170 L~l~~n~l~~~~~~~l~~L~~L~l~~n~--l~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~  246 (390)
T 3o6n_A          170 LQLSSNRLTHVDLSLIPSLFHANVSYNL--LSTLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN  246 (390)
T ss_dssp             EECCSSCCSBCCGGGCTTCSEEECCSSC--CSEEE-CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGG
T ss_pred             EECCCCcCCccccccccccceeeccccc--ccccC-CCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcC
Confidence            7776665421100      001111100  00111 2245667766665     1122357888888776544 335677


Q ss_pred             CCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          274 MQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       274 ~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      +++|+++.+..+....      .....+..+++++.|.++++.+
T Consensus       247 l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l  284 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEK------IMYHPFVKMQRLERLYISNNRL  284 (390)
T ss_dssp             CTTCSEEECCSSCCCE------EESGGGTTCSSCCEEECCSSCC
T ss_pred             CCCccEEECCCCcCCC------cChhHccccccCCEEECCCCcC
Confidence            8888888886543211      1134567788999999987754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.32  E-value=1.6e-07  Score=88.05  Aligned_cols=83  Identities=13%  Similarity=0.045  Sum_probs=41.5

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCC--CCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADP--PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      .++++|+++..... ...|..+..+++|++|+| .++.+...  ....++++|++|+|.++.+.+. ....+..++.|+.
T Consensus       104 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~  180 (477)
T 2id5_A          104 SNLTKLDISENKIV-ILLDYMFQDLYNLKSLEV-GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIV  180 (477)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEEE-CCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCE
T ss_pred             CCCCEEECCCCccc-cCChhHccccccCCEEEC-CCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcE
Confidence            35666666544211 112334445566666666 54433222  1233566666666666655432 1233455566666


Q ss_pred             eeeeeecC
Q 048811          206 LSLTVLIQ  213 (318)
Q Consensus       206 L~l~~c~~  213 (318)
                      |.+.++..
T Consensus       181 L~l~~n~i  188 (477)
T 2id5_A          181 LRLRHLNI  188 (477)
T ss_dssp             EEEESCCC
T ss_pred             EeCCCCcC
Confidence            66655543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.31  E-value=1.5e-07  Score=84.05  Aligned_cols=177  Identities=13%  Similarity=0.113  Sum_probs=103.5

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|+++..... ...|..+..+++|++|+| .++.+...|... +++|++|++.++.+... ....+.+++.|+.|+
T Consensus        76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L-s~n~l~~l~~~~-~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~  151 (330)
T 1xku_A           76 KNLHTLILINNKIS-KISPGAFAPLVKLERLYL-SKNQLKELPEKM-PKTLQELRVHENEITKV-RKSVFNGLNQMIVVE  151 (330)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC-CSSCCSBCCSSC-CTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCC-eeCHHHhcCCCCCCEEEC-CCCcCCccChhh-cccccEEECCCCccccc-CHhHhcCCccccEEE
Confidence            57888888765322 123556667889999999 777666555433 48999999998877654 345578899999999


Q ss_pred             eeeecCCCC--CC---------CceeeeccccceEEEE-EEcCccceEEEeee--EE------EeCCCeeEEEEEecccc
Q 048811          208 LTVLIQPDD--PP---------ANFIIQSTTLNTLTFV-VLFASLRGMSYHHR--AV------IMAPNLQLIRIVDNMLM  267 (318)
Q Consensus       208 l~~c~~~~~--~~---------~~~~i~s~~~~~~~l~-i~~~~L~~L~i~~~--~~------i~~P~L~~L~~~~~~~~  267 (318)
                      +.++.....  .+         ..+.++...+.  .+. -..++|+.|+++++  ..      -..++|++|.++++...
T Consensus       152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  229 (330)
T 1xku_A          152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  229 (330)
T ss_dssp             CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC--SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCccCcChhhccCCCCcCEEECCCCccc--cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence            999866210  00         01111111000  000 00146666666665  11      13456777777666543


Q ss_pred             ---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          268 ---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       268 ---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                         ...+..+++|+++.+..+...       .+...+..+++++.|+++++.+
T Consensus       230 ~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          230 AVDNGSLANTPHLRELHLNNNKLV-------KVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             EECTTTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSCCEEECCSSCC
T ss_pred             eeChhhccCCCCCCEEECCCCcCc-------cCChhhccCCCcCEEECCCCcC
Confidence               123556677777666544321       1122356777888888876643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.30  E-value=2.6e-07  Score=86.61  Aligned_cols=160  Identities=13%  Similarity=0.123  Sum_probs=102.4

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|+++.+...  .+|. +..+++|++|+| .++.+...+....+++|++|+|.++.+.+..  . +..++.|++|+
T Consensus        68 ~~L~~L~Ls~n~l~--~~~~-~~~l~~L~~L~l-~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~  140 (466)
T 1o6v_A           68 NNLTQINFSNNQLT--DITP-LKNLTKLVDILM-NNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLE  140 (466)
T ss_dssp             TTCCEEECCSSCCC--CCGG-GTTCTTCCEEEC-CSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEE
T ss_pred             cCCCEEECCCCccC--Cchh-hhccccCCEEEC-CCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEE
Confidence            57888887765322  2333 566778888888 7776665544567888888888887765532  2 67788888888


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee-----EEEeCCCeeEEEEEecccc-ceeecCCCCceEEE
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR-----AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQAT  281 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~-----~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l~  281 (318)
                      +.+|...+.              ..+ -..++|+.|.+.+.     .....++|++|.++++... ...+..+++|+.+.
T Consensus       141 l~~n~l~~~--------------~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~  205 (466)
T 1o6v_A          141 LSSNTISDI--------------SAL-SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI  205 (466)
T ss_dssp             EEEEEECCC--------------GGG-TTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             CCCCccCCC--------------hhh-ccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEE
Confidence            888876211              000 13466777777544     1224577888888777643 23466788888888


Q ss_pred             EEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          282 LDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       282 l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      +..+.....    .    -+..+++++.|.++++.+
T Consensus       206 l~~n~l~~~----~----~~~~l~~L~~L~l~~n~l  233 (466)
T 1o6v_A          206 ATNNQISDI----T----PLGILTNLDELSLNGNQL  233 (466)
T ss_dssp             CCSSCCCCC----G----GGGGCTTCCEEECCSSCC
T ss_pred             ecCCccccc----c----cccccCCCCEEECCCCCc
Confidence            765432111    1    156788899998887653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.30  E-value=2.2e-07  Score=87.13  Aligned_cols=81  Identities=16%  Similarity=0.040  Sum_probs=40.2

Q ss_pred             CceEEEEEEccCccccCCCC-CccCCcccEEEecccceecCC--CCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          129 NVREMEIDIIQYAPMQLPGC-VYSSMTLEVLRLHTAFRFADP--PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      ++++|+++...  ...+|.. +..+++|++|+| .++.+...  .....+++|++|+|.++.+.... ...+.++++|++
T Consensus        81 ~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~  156 (477)
T 2id5_A           81 NLRTLGLRSNR--LKLIPLGVFTGLSNLTKLDI-SENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQ  156 (477)
T ss_dssp             TCCEEECCSSC--CCSCCTTSSTTCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCE
T ss_pred             cCCEEECCCCc--CCccCcccccCCCCCCEEEC-CCCccccCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCE
Confidence            56666655432  1233332 234566666666 54443322  12235666666666655443321 223455666666


Q ss_pred             eeeeeecC
Q 048811          206 LSLTVLIQ  213 (318)
Q Consensus       206 L~l~~c~~  213 (318)
                      |.+.+|..
T Consensus       157 L~l~~n~l  164 (477)
T 2id5_A          157 LTLEKCNL  164 (477)
T ss_dssp             EEEESCCC
T ss_pred             EECCCCcC
Confidence            66666644

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.29  E-value=7.6e-07  Score=84.06  Aligned_cols=157  Identities=14%  Similarity=0.059  Sum_probs=100.4

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL  208 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l  208 (318)
                      ++++|+++...... ..|..+..+++|++|+| .++.+...+....+++|++|+|+++.+.+-      ...|.|+.|++
T Consensus        35 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L-s~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l------~~~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQ-ISAADLAPFTKLELLNL-SSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCC-CCGGGGTTCTTCCEEEC-TTSCCEEEEECTTCTTCCEEECCSSEEEEE------EECTTCCEEEC
T ss_pred             CccEEEeeCCcCCC-CCHHHHhCCCCCCEEEe-eCCCCCCCcccccCCCCCEEEecCCcCCCC------CCCCCcCEEEC
Confidence            68888887763322 12345566788888888 666654333356788888888888876542      23488888888


Q ss_pred             eeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEeccccc---eee-cCCCC
Q 048811          209 TVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLME---YEV-HEMQS  276 (318)
Q Consensus       209 ~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~~---~~~-~~~~s  276 (318)
                      .+|....              ..  .-..++|+.|+++++        .....++|++|.++++....   ..+ ..+++
T Consensus       107 ~~N~l~~--------------~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~  170 (487)
T 3oja_A          107 ANNNISR--------------VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (487)
T ss_dssp             CSSCCCC--------------EE--ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             cCCcCCC--------------CC--ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence            8887721              11  113477888888887        12246788888888876542   223 36788


Q ss_pred             ceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          277 IQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       277 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      |+.+++..+.....        .-...+++++.|.|+++.+
T Consensus       171 L~~L~Ls~N~l~~~--------~~~~~l~~L~~L~Ls~N~l  203 (487)
T 3oja_A          171 LEHLNLQYNFIYDV--------KGQVVFAKLKTLDLSSNKL  203 (487)
T ss_dssp             CCEEECTTSCCCEE--------ECCCCCTTCCEEECCSSCC
T ss_pred             ccEEecCCCccccc--------cccccCCCCCEEECCCCCC
Confidence            88888765432110        1122478888888887754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.28  E-value=3.5e-07  Score=91.14  Aligned_cols=144  Identities=14%  Similarity=0.096  Sum_probs=83.5

Q ss_pred             ccCCcccEEEecccceecCC-CCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeecccc
Q 048811          150 YSSMTLEVLRLHTAFRFADP-PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTL  228 (318)
Q Consensus       150 ~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~  228 (318)
                      ..+++|++|+| .++.+... |....+++|++|+|.++.+.+. +...+..|++|++|++.+|.....            
T Consensus       197 ~~l~~L~~L~L-s~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~------------  262 (768)
T 3rgz_A          197 SRCVNLEFLDV-SSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGP------------  262 (768)
T ss_dssp             TTCTTCCEEEC-CSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEES------------
T ss_pred             ccCCcCCEEEC-cCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCc------------
Confidence            45677888888 66655442 3345678888888888777544 445567788888888888865211            


Q ss_pred             ceEEEEEEcCccceEEEeeeEEE--------e-CCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhh
Q 048811          229 NTLTFVVLFASLRGMSYHHRAVI--------M-APNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQR  296 (318)
Q Consensus       229 ~~~~l~i~~~~L~~L~i~~~~~i--------~-~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~  296 (318)
                       ...  ...++|+.|++++|...        . .++|++|.+.++...   ...++++++|+++.+..+.....     .
T Consensus       263 -~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----i  334 (768)
T 3rgz_A          263 -IPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE-----L  334 (768)
T ss_dssp             -CCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE-----C
T ss_pred             -cCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc-----C
Confidence             000  14566777777766111        1 266777777666432   23455667777766654321100     0


Q ss_pred             HHHHhcCCCceeEEEeecC
Q 048811          297 ARNLIEGVATTACLILSGG  315 (318)
Q Consensus       297 ~~~~l~~l~~v~~L~l~~~  315 (318)
                      -...+..+++++.|.++.+
T Consensus       335 p~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          335 PMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             CHHHHTTCTTCCEEECCSS
T ss_pred             CHHHHhcCCCCCEEeCcCC
Confidence            0233555666666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.28  E-value=9.9e-08  Score=82.94  Aligned_cols=167  Identities=13%  Similarity=0.112  Sum_probs=119.1

Q ss_pred             HCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          127 MRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       127 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      ...+++|.+......  .+ ..+..+++|++|+| .++.+...+....+++|++|+|.++.+.+. ....+..++.|++|
T Consensus        40 l~~L~~L~l~~~~i~--~~-~~l~~l~~L~~L~l-~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           40 LNSIDQIIANNSDIK--SV-QGIQYLPNVRYLAL-GGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKEL  114 (272)
T ss_dssp             HTTCCEEECTTSCCC--CC-TTGGGCTTCCEEEC-TTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred             ccceeeeeeCCCCcc--cc-cccccCCCCcEEEC-CCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEE
Confidence            457888887765322  22 34667899999999 888777766666899999999999887643 34557889999999


Q ss_pred             eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----E----EEeCCCeeEEEEEecccc---ceeecCCC
Q 048811          207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----A----VIMAPNLQLIRIVDNMLM---EYEVHEMQ  275 (318)
Q Consensus       207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~----~i~~P~L~~L~~~~~~~~---~~~~~~~~  275 (318)
                      .+.+|......+..            + -..++|+.|+++++    +    .-..++|++|.+.++...   ...++.++
T Consensus       115 ~L~~n~l~~~~~~~------------~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  181 (272)
T 3rfs_A          115 VLVENQLQSLPDGV------------F-DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT  181 (272)
T ss_dssp             ECTTSCCCCCCTTT------------T-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ECCCCcCCccCHHH------------h-ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc
Confidence            99999873110000            0 03478999999988    1    235688999999998654   22367899


Q ss_pred             CceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          276 SIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       276 sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      +|+.+.+..+....-.      ...+..+++++.|+++++.+
T Consensus       182 ~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          182 QLKDLRLYQNQLKSVP------DGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             TCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSSCB
T ss_pred             cCCEEECCCCcCCccC------HHHHhCCcCCCEEEccCCCc
Confidence            9999988765432111      24577899999999988753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.26  E-value=9.5e-08  Score=84.02  Aligned_cols=160  Identities=13%  Similarity=0.102  Sum_probs=117.0

Q ss_pred             HCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          127 MRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       127 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      ...+++|+++.+...  .++ .+..+++|+.|+| .++.+...+....+++|++|+|.++.+.+  +.. +..++.|+.|
T Consensus        45 l~~L~~L~l~~~~i~--~~~-~~~~l~~L~~L~L-~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           45 LNSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFL-NGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSL  117 (291)
T ss_dssp             HHTCCEEECTTSCCC--CCT-TGGGCTTCCEEEC-CSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEE
T ss_pred             cCcccEEEccCCCcc--cCh-hHhcCCCCCEEEc-cCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEE
Confidence            347888888765332  333 3566899999999 88877766556789999999999998866  333 7889999999


Q ss_pred             eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc-ceeecCCCCceE
Q 048811          207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQ  279 (318)
Q Consensus       207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~  279 (318)
                      ++.+|...+-              ..+ -..++|+.|+++++      .....++|++|.++++... ...+..+++|+.
T Consensus       118 ~L~~n~i~~~--------------~~l-~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~  182 (291)
T 1h6t_A          118 SLEHNGISDI--------------NGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN  182 (291)
T ss_dssp             ECTTSCCCCC--------------GGG-GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCE
T ss_pred             ECCCCcCCCC--------------hhh-cCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCE
Confidence            9999987311              000 13578999999988      2235689999999988654 223778999999


Q ss_pred             EEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          280 ATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       280 l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                      +.+.-+....       + .-+..+++++.|.++++.
T Consensus       183 L~L~~N~i~~-------l-~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          183 LYLSKNHISD-------L-RALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             EECCSSCCCB-------C-GGGTTCTTCSEEEEEEEE
T ss_pred             EECCCCcCCC-------C-hhhccCCCCCEEECcCCc
Confidence            9886553211       1 227889999999998864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.26  E-value=7.7e-07  Score=79.04  Aligned_cols=171  Identities=13%  Similarity=0.061  Sum_probs=111.7

Q ss_pred             CCCChhHHHHHHHH--CCceEEEEEEccCccccCC-CCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCc
Q 048811          114 RRDRFPLWVSQAIM--RNVREMEIDIIQYAPMQLP-GCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPEN  190 (318)
Q Consensus       114 ~~~~~~~wl~~a~~--~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  190 (318)
                      ....+...+.....  .++++|+++.....  .++ ..+..+++|++|+| .++.+...+....+++|++|+|.++.+.+
T Consensus        18 s~~~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~l~~L~~L~Ls~n~l~~   94 (317)
T 3o53_A           18 TDSSLKQALASLRQSAWNVKELDLSGNPLS--QISAADLAPFTKLELLNL-SSNVLYETLDLESLSTLRTLDLNNNYVQE   94 (317)
T ss_dssp             CTTTHHHHHHHHHTTGGGCSEEECTTSCCC--CCCHHHHTTCTTCCEEEC-TTSCCEEEEEETTCTTCCEEECCSSEEEE
T ss_pred             cccchhhhHHHHhccCCCCCEEECcCCccC--cCCHHHhhCCCcCCEEEC-CCCcCCcchhhhhcCCCCEEECcCCcccc
Confidence            44556666655543  47888888765322  233 34556789999999 77765444335688999999998887654


Q ss_pred             chhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEE
Q 048811          191 RVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIV  262 (318)
Q Consensus       191 ~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~  262 (318)
                      -      ..+|.|+.|.+.++...               .. ..-..++|+.|.++++        .....++|++|.++
T Consensus        95 l------~~~~~L~~L~l~~n~l~---------------~~-~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls  152 (317)
T 3o53_A           95 L------LVGPSIETLHAANNNIS---------------RV-SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK  152 (317)
T ss_dssp             E------EECTTCCEEECCSSCCS---------------EE-EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred             c------cCCCCcCEEECCCCccC---------------Cc-CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence            2      24589999999988772               11 1113578999998887        12235889999998


Q ss_pred             eccccce---e-ecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          263 DNMLMEY---E-VHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       263 ~~~~~~~---~-~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      ++.....   . ...+++|+++++..+.....        .-...+++++.|.|+++.+
T Consensus       153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--------KGQVVFAKLKTLDLSSNKL  203 (317)
T ss_dssp             TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--------ECCCCCTTCCEEECCSSCC
T ss_pred             CCCCCcccHHHHhhccCcCCEEECCCCcCccc--------ccccccccCCEEECCCCcC
Confidence            8765421   2 24678999988865432110        1122478899999988754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.25  E-value=1.4e-07  Score=91.25  Aligned_cols=54  Identities=20%  Similarity=0.222  Sum_probs=27.5

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEE
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYIT  186 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~  186 (318)
                      .++++|++.....  ..+| .+..+++|++|++ .++.+...|.. .+++|++|++.++
T Consensus       285 ~~L~~L~l~~~~~--~~l~-~l~~~~~L~~L~l-~~n~l~~lp~~-~l~~L~~L~l~~n  338 (606)
T 3vq2_A          285 ANVSAMSLAGVSI--KYLE-DVPKHFKWQSLSI-IRCQLKQFPTL-DLPFLKSLTLTMN  338 (606)
T ss_dssp             TTCSEEEEESCCC--CCCC-CCCTTCCCSEEEE-ESCCCSSCCCC-CCSSCCEEEEESC
T ss_pred             CCCCEEEecCccc--hhhh-hccccccCCEEEc-ccccCcccccC-CCCccceeeccCC
Confidence            4666666665432  2233 3444556666666 55554444432 4555555555444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.25  E-value=4.1e-08  Score=91.56  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=44.4

Q ss_pred             CCceEEEEEEccCccc---cCCCCCccCCcccEEEecccceecCC-C--CcCCCC----CCceeEeeEEEeCcch---hh
Q 048811          128 RNVREMEIDIIQYAPM---QLPGCVYSSMTLEVLRLHTAFRFADP-P--DGVCFP----QLKILQIYITHPENRV---TE  194 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~---~lp~~~~~~~~L~~L~L~~~~~~~~~-~--~~~~~~----~L~~L~L~~~~~~~~~---l~  194 (318)
                      +++++|+++.+.....   .++..+..+++|++|+| .++.+.+. +  ....++    +|++|+|.++.+.+.+   +.
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L-s~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL-RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEEC-TTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeC-CCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            5667776666532211   23344445566666666 55443221 0  001233    5666666666665543   44


Q ss_pred             hhhcCCcccceeeeeeecC
Q 048811          195 KLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       195 ~ll~~cp~Le~L~l~~c~~  213 (318)
                      ..+..||.|++|++.++..
T Consensus       107 ~~l~~~~~L~~L~Ls~n~i  125 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNLL  125 (461)
T ss_dssp             HHTTSCTTCCEEECCSSBC
T ss_pred             HHHccCCceeEEECCCCcC
Confidence            4555666666666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.25  E-value=2.3e-06  Score=81.86  Aligned_cols=62  Identities=13%  Similarity=0.041  Sum_probs=32.3

Q ss_pred             CCCCCccCCcccEEEecccceecCCCCcC-CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeec
Q 048811          145 LPGCVYSSMTLEVLRLHTAFRFADPPDGV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLI  212 (318)
Q Consensus       145 lp~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  212 (318)
                      .|..+..+++|+.|++ .++.+...|... .+ +|++|++.++.+..-  ..  ..+|.|++|.+.++.
T Consensus       274 ~~~~~~~l~~L~~L~l-~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l--~~--~~l~~L~~L~l~~n~  336 (570)
T 2z63_A          274 IIDLFNCLTNVSSFSL-VSVTIERVKDFSYNF-GWQHLELVNCKFGQF--PT--LKLKSLKRLTFTSNK  336 (570)
T ss_dssp             STTTTGGGTTCSEEEE-ESCEECSCCBCCSCC-CCSEEEEESCBCSSC--CB--CBCSSCCEEEEESCB
T ss_pred             chhhhcCcCcccEEEe-cCccchhhhhhhccC-CccEEeeccCccccc--Cc--ccccccCEEeCcCCc
Confidence            4444555666777777 665555444322 34 677777766665421  11  234444554444443

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.24  E-value=5.6e-07  Score=78.56  Aligned_cols=37  Identities=27%  Similarity=0.553  Sum_probs=34.5

Q ss_pred             CccCCCCChHHHHHHhhcCChhhHh-hhhhcchhhHhh
Q 048811           22 EDRISALPDSVLSNILTFLPLEDAV-ATSSLSQRWRHA   58 (318)
Q Consensus        22 ~d~is~LPd~vL~~Ils~L~~~d~~-~ts~vskrWr~l   58 (318)
                      ...+..||||+|.+||++||.++++ +++.|||+|+.+
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            3578899999999999999999999 999999999975

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.24  E-value=8e-08  Score=92.87  Aligned_cols=81  Identities=10%  Similarity=0.022  Sum_probs=33.3

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceec-CCC--CcCCCCCCceeEeeEEEeCcch-hhhhhcCCcccc
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFA-DPP--DGVCFPQLKILQIYITHPENRV-TEKLFCSCPSLT  204 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~--~~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le  204 (318)
                      ++++|+++...... ..|..+..+++|+.|+| .++.+. ..+  ....+++|++|+|.++.+.+.. ....+..+|.|+
T Consensus       302 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l-~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  379 (606)
T 3t6q_A          302 TLKKLVLSANKFEN-LCQISASNFPSLTHLSI-KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ  379 (606)
T ss_dssp             TCCEEECTTCCCSB-GGGGCGGGCTTCSEEEC-CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred             cCCEEECccCCcCc-CchhhhhccCcCCEEEC-CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCC
Confidence            55666555432111 11223334455555555 444322 111  1224455555555544443322 122334445555


Q ss_pred             eeeeeee
Q 048811          205 ELSLTVL  211 (318)
Q Consensus       205 ~L~l~~c  211 (318)
                      +|++.+|
T Consensus       380 ~L~l~~n  386 (606)
T 3t6q_A          380 SLNLSYN  386 (606)
T ss_dssp             EEECCSC
T ss_pred             EEECCCC
Confidence            5554444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.23  E-value=5.6e-07  Score=84.28  Aligned_cols=75  Identities=17%  Similarity=0.065  Sum_probs=41.1

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      ..+++|+++......  ++  +..+++|++|+| .++.+...+ ...+++|++|+|.++.+.+-.    +..++.|++|.
T Consensus        85 ~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L-~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~  154 (457)
T 3bz5_A           85 TNLTYLACDSNKLTN--LD--VTPLTKLTYLNC-DTNKLTKLD-VSQNPLLTYLNCARNTLTEID----VSHNTQLTELD  154 (457)
T ss_dssp             TTCSEEECCSSCCSC--CC--CTTCTTCCEEEC-CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCce--ee--cCCCCcCCEEEC-CCCcCCeec-CCCCCcCCEEECCCCccceec----cccCCcCCEEE
Confidence            356666665543222  22  345566666666 555544433 345666666666666555421    44566666666


Q ss_pred             eeeec
Q 048811          208 LTVLI  212 (318)
Q Consensus       208 l~~c~  212 (318)
                      +.+|.
T Consensus       155 l~~n~  159 (457)
T 3bz5_A          155 CHLNK  159 (457)
T ss_dssp             CTTCS
T ss_pred             CCCCC
Confidence            66663

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.23  E-value=6e-07  Score=84.08  Aligned_cols=170  Identities=9%  Similarity=0.028  Sum_probs=94.3

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|+++......  +|  +..+++|++|+| .++.+...+ ...+++|++|+|.++.+.+-  .  +..++.|++|.
T Consensus        64 ~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~L-s~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~  133 (457)
T 3bz5_A           64 TGLTKLICTSNNITT--LD--LSQNTNLTYLAC-DSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLN  133 (457)
T ss_dssp             TTCSEEECCSSCCSC--CC--CTTCTTCSEEEC-CSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCe--Ec--cccCCCCCEEEC-cCCCCceee-cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEE
Confidence            578888887764333  23  556788899999 777766654 45788899999988877653  2  67888999999


Q ss_pred             eeeecCCCCCCC------ceeeeccccceEEEEE-EcCccceEEEeee-----EEEeCCCeeEEEEEeccccceeecCCC
Q 048811          208 LTVLIQPDDPPA------NFIIQSTTLNTLTFVV-LFASLRGMSYHHR-----AVIMAPNLQLIRIVDNMLMEYEVHEMQ  275 (318)
Q Consensus       208 l~~c~~~~~~~~------~~~i~s~~~~~~~l~i-~~~~L~~L~i~~~-----~~i~~P~L~~L~~~~~~~~~~~~~~~~  275 (318)
                      +.++........      .+.++.-.. ...+.+ ..++|+.|+++++     -....++|+.|.+.++......++.++
T Consensus       134 l~~N~l~~l~l~~l~~L~~L~l~~n~~-~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~  212 (457)
T 3bz5_A          134 CARNTLTEIDVSHNTQLTELDCHLNKK-ITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNI  212 (457)
T ss_dssp             CTTSCCSCCCCTTCTTCCEEECTTCSC-CCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCT
T ss_pred             CCCCccceeccccCCcCCEEECCCCCc-ccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeeccccCC
Confidence            988876311000      000000000 000001 1234555555544     111334555555555544333455566


Q ss_pred             CceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          276 SIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       276 sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      +|+.+.+..+....       +.  +..+++++.|.++++.+
T Consensus       213 ~L~~L~Ls~N~l~~-------ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          213 QLTFLDCSSNKLTE-------ID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             TCSEEECCSSCCSC-------CC--CTTCTTCSEEECCSSCC
T ss_pred             CCCEEECcCCcccc-------cC--ccccCCCCEEEeeCCcC
Confidence            66665554332111       11  55667777777776543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.22  E-value=1.9e-06  Score=83.10  Aligned_cols=60  Identities=17%  Similarity=0.092  Sum_probs=48.6

Q ss_pred             CccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          149 VYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       149 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      +..+++|+.|++ .++.+...+....+++|++|++.++.+..  +..+  .+|.|++|.+.++..
T Consensus       281 ~~~l~~L~~L~l-~~~~~~~l~~l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~  340 (606)
T 3vq2_A          281 FHCLANVSAMSL-AGVSIKYLEDVPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKG  340 (606)
T ss_dssp             CGGGTTCSEEEE-ESCCCCCCCCCCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSS
T ss_pred             cccCCCCCEEEe-cCccchhhhhccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcC
Confidence            556689999999 88877777766688999999999999832  4544  899999999999854

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.22  E-value=3.8e-07  Score=90.91  Aligned_cols=163  Identities=12%  Similarity=0.127  Sum_probs=82.2

Q ss_pred             CceEEEEEEccCccccCCC--CCccCCcccEEEecccceecCC-CCc--CCCCCCceeEeeEEEeCcchhh--hhhcCCc
Q 048811          129 NVREMEIDIIQYAPMQLPG--CVYSSMTLEVLRLHTAFRFADP-PDG--VCFPQLKILQIYITHPENRVTE--KLFCSCP  201 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~~-~~~--~~~~~L~~L~L~~~~~~~~~l~--~ll~~cp  201 (318)
                      ++++|+++.+... ..+|.  .+..+++|++|+| .++.+... |..  ..+++|++|+|.++.+.+....  ..+.+|+
T Consensus       101 ~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          101 SLTSLDLSRNSLS-GPVTTLTSLGSCSGLKFLNV-SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             TCCEEECCSSEEE-EEGGGGGGGGGCTTCCEEEC-CSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCEEECCCCcCC-CcCCChHHHhCCCCCCEEEC-cCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            5555555544211 12333  4555666666666 55544322 211  3566666666666655443311  2255666


Q ss_pred             ccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee-------EEEeCCCeeEEEEEecccc---ceee
Q 048811          202 SLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR-------AVIMAPNLQLIRIVDNMLM---EYEV  271 (318)
Q Consensus       202 ~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~-------~~i~~P~L~~L~~~~~~~~---~~~~  271 (318)
                      .|++|++.+|.....              ... -..++|+.|+++++       ..-..++|++|.+.++...   ...+
T Consensus       179 ~L~~L~Ls~n~l~~~--------------~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  243 (768)
T 3rgz_A          179 ELKHLAISGNKISGD--------------VDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI  243 (768)
T ss_dssp             TCCEEECCSSEEESC--------------CBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred             CCCEEECCCCccccc--------------CCc-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHH
Confidence            666666666654211              000 13456677776666       1123466777777666543   2345


Q ss_pred             cCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          272 HEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       272 ~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                      +++++|+.+.+..+......  ..      ..+++++.|.++.+.
T Consensus       244 ~~l~~L~~L~Ls~n~l~~~~--~~------~~l~~L~~L~L~~n~  280 (768)
T 3rgz_A          244 STCTELKLLNISSNQFVGPI--PP------LPLKSLQYLSLAENK  280 (768)
T ss_dssp             TTCSSCCEEECCSSCCEESC--CC------CCCTTCCEEECCSSE
T ss_pred             hcCCCCCEEECCCCcccCcc--Cc------cccCCCCEEECcCCc
Confidence            56677777666544221100  00      156677777776553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.22  E-value=1.7e-06  Score=78.88  Aligned_cols=174  Identities=14%  Similarity=0.087  Sum_probs=114.3

Q ss_pred             CCceEEEEEEccCccccCCCCC-ccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          128 RNVREMEIDIIQYAPMQLPGCV-YSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      .++++|+++....  ..+|..+ ..+++|++|+| .++.+...+  ....+++|++|+|.++.+....    +..+|.|+
T Consensus       117 ~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~  189 (390)
T 3o6n_A          117 PLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSM-SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLF  189 (390)
T ss_dssp             TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC-CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCS
T ss_pred             CCCCEEECCCCcc--CcCCHHHhcCCCCCcEEEC-CCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccc
Confidence            4788888887633  3566665 46789999999 777665443  2457899999999998877643    34567777


Q ss_pred             eeeeeeecCCC----CCCCceeeeccccceEEEE-EEcCccceEEEeee------EEEeCCCeeEEEEEecccc---cee
Q 048811          205 ELSLTVLIQPD----DPPANFIIQSTTLNTLTFV-VLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM---EYE  270 (318)
Q Consensus       205 ~L~l~~c~~~~----~~~~~~~i~s~~~~~~~l~-i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~---~~~  270 (318)
                      .|.+.++....    .....+.++...+.  .+. -..++|+.|+++++      .....|+|++|.++++...   ...
T Consensus       190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          190 HANVSYNLLSTLAIPIAVEELDASHNSIN--VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             EEECCSSCCSEEECCSSCSEEECCSSCCC--EEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             eeecccccccccCCCCcceEEECCCCeee--eccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhH
Confidence            77777665421    00112222221111  111 12368999999988      2335689999999998754   235


Q ss_pred             ecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          271 VHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       271 ~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      +.++++|+.+.+..+....       +......+++++.|.|+.+.+
T Consensus       268 ~~~l~~L~~L~L~~n~l~~-------~~~~~~~l~~L~~L~L~~n~l  307 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLVA-------LNLYGQPIPTLKVLDLSHNHL  307 (390)
T ss_dssp             GTTCSSCCEEECCSSCCCE-------EECSSSCCTTCCEEECCSSCC
T ss_pred             ccccccCCEEECCCCcCcc-------cCcccCCCCCCCEEECCCCcc
Confidence            7789999999986553211       122346789999999998754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.20  E-value=5.8e-07  Score=83.63  Aligned_cols=82  Identities=18%  Similarity=0.167  Sum_probs=36.9

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecC--CCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD--PPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      ++++|+++..... ...|..+..+++|++|+| .++.+..  ++.  ...+++|++|+|.++.+.+..-..++.+++.|+
T Consensus        80 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  157 (455)
T 3v47_A           80 SLIILKLDYNQFL-QLETGAFNGLANLEVLTL-TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH  157 (455)
T ss_dssp             TCCEEECTTCTTC-EECTTTTTTCTTCCEEEC-TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred             cCCEEeCCCCccC-ccChhhccCcccCCEEeC-CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence            4555555443211 112333444555555555 4444432  111  234555555555555544332222344555555


Q ss_pred             eeeeeeec
Q 048811          205 ELSLTVLI  212 (318)
Q Consensus       205 ~L~l~~c~  212 (318)
                      +|++.++.
T Consensus       158 ~L~L~~n~  165 (455)
T 3v47_A          158 VLDLTFNK  165 (455)
T ss_dssp             EEECTTCC
T ss_pred             EEeCCCCc
Confidence            55555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.19  E-value=1.9e-06  Score=83.34  Aligned_cols=177  Identities=15%  Similarity=0.144  Sum_probs=97.4

Q ss_pred             CCceEEEEEEccCccccCCC-CCccCCcccEEEecccceecCCCCc--CCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          128 RNVREMEIDIIQYAPMQLPG-CVYSSMTLEVLRLHTAFRFADPPDG--VCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      .+++.|+++.+..  ..+|. .+..+++|++|+| .++.+...|..  ..+++|++|+|.++.+... ....+.++++|+
T Consensus        99 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L-~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~  174 (597)
T 3oja_B           99 HTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQ  174 (597)
T ss_dssp             TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCC
T ss_pred             CCCCEEECCCCcC--CCCCHHHHcCCCCCCEEEe-eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCc
Confidence            3566666655421  12333 3345667777777 66655554432  3667777777777665432 233456677777


Q ss_pred             eeeeeeecCCCCCC------CceeeeccccceEEEEEEcCccceEEEeee-----EEEeCCCeeEEEEEecccc-ceeec
Q 048811          205 ELSLTVLIQPDDPP------ANFIIQSTTLNTLTFVVLFASLRGMSYHHR-----AVIMAPNLQLIRIVDNMLM-EYEVH  272 (318)
Q Consensus       205 ~L~l~~c~~~~~~~------~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~-----~~i~~P~L~~L~~~~~~~~-~~~~~  272 (318)
                      .|.+.++.......      ..+.++...  ...+. ..++|+.|+++++     .....++|++|.+.++... ...++
T Consensus       175 ~L~L~~N~l~~~~~~~l~~L~~L~l~~n~--l~~l~-~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~  251 (597)
T 3oja_B          175 NLQLSSNRLTHVDLSLIPSLFHANVSYNL--LSTLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL  251 (597)
T ss_dssp             EEECTTSCCSBCCGGGCTTCSEEECCSSC--CSEEE-CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG
T ss_pred             EEECcCCCCCCcChhhhhhhhhhhcccCc--ccccc-CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc
Confidence            77777665421100      001111100  01111 2345677776666     1122356888888777544 34567


Q ss_pred             CCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          273 EMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       273 ~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      .+++|+.+.+..+....      .....+..+++++.|.|+++.+
T Consensus       252 ~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEK------IMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             GCTTCSEEECCSSCCCE------EESGGGTTCSSCCEEECTTSCC
T ss_pred             cCCCCCEEECCCCccCC------CCHHHhcCccCCCEEECCCCCC
Confidence            88899998886543211      1134567889999999988754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.18  E-value=1.4e-07  Score=84.36  Aligned_cols=58  Identities=12%  Similarity=0.120  Sum_probs=23.0

Q ss_pred             cCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeee
Q 048811          151 SSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVL  211 (318)
Q Consensus       151 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c  211 (318)
                      .+++|++|+| .++.+...|.... ++|++|+|.++.+..- ....+.+++.|+.|.+.++
T Consensus       100 ~l~~L~~L~L-~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A          100 PLRKLQKLYI-SKNHLVEIPPNLP-SSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGN  157 (332)
T ss_dssp             TCTTCCEEEC-CSSCCCSCCSSCC-TTCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSC
T ss_pred             CcCCCCEEEC-CCCcCCccCcccc-ccCCEEECCCCccCcc-CHhHhCCCccCCEEECCCC
Confidence            3444555555 4443333322211 4444444444443321 1122334444444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=3.8e-08  Score=79.59  Aligned_cols=42  Identities=5%  Similarity=-0.094  Sum_probs=36.2

Q ss_pred             CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCC
Q 048811          174 CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDD  216 (318)
Q Consensus       174 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~  216 (318)
                      .-..|++|+|++|.+++.++..+ .+||.|++|+|.+|...+|
T Consensus        59 ~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD  100 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIED  100 (176)
T ss_dssp             TCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCH
T ss_pred             CCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCH
Confidence            44579999999999988888876 7999999999999986544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.16  E-value=8.1e-07  Score=69.61  Aligned_cols=83  Identities=23%  Similarity=0.210  Sum_probs=39.5

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL  208 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l  208 (318)
                      ++++|+++.+......+|..+..+++|+.|+| .++.+...+....+++|++|+|.++.+.+. +...+..+|.|+.|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLST-INVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEEC-TTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEEC-cCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence            34555544432221234444444555555555 444444333333455555555555554432 3344444555555555


Q ss_pred             eeecC
Q 048811          209 TVLIQ  213 (318)
Q Consensus       209 ~~c~~  213 (318)
                      .++..
T Consensus        96 s~N~i  100 (149)
T 2je0_A           96 SGNKI  100 (149)
T ss_dssp             TTSCC
T ss_pred             CCCcC
Confidence            55544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.16  E-value=2.1e-06  Score=81.37  Aligned_cols=123  Identities=15%  Similarity=0.117  Sum_probs=80.1

Q ss_pred             cCCCCCccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCce
Q 048811          144 QLPGCVYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANF  221 (318)
Q Consensus       144 ~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~  221 (318)
                      .+|..+.  ++|++|+| .++.+...+  ....+++|++|+|.++.+.+. ....+.+++.|++|++.++...       
T Consensus        14 ~ip~~~~--~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-------   82 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNI-SQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-------   82 (520)
T ss_dssp             SCCCSCC--TTCSEEEC-CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-------
T ss_pred             ccccccc--ccccEEEC-CCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-------
Confidence            4565544  78888888 777665543  234788888888888776543 2345677888888888888662       


Q ss_pred             eeeccccceEEEEEEcCccceEEEeeeE----E-----EeCCCeeEEEEEeccccceeecCCCCc--eEEEEEEEe
Q 048811          222 IIQSTTLNTLTFVVLFASLRGMSYHHRA----V-----IMAPNLQLIRIVDNMLMEYEVHEMQSI--QQATLDLQH  286 (318)
Q Consensus       222 ~i~s~~~~~~~l~i~~~~L~~L~i~~~~----~-----i~~P~L~~L~~~~~~~~~~~~~~~~sL--~~l~l~~~~  286 (318)
                             .....  ..++|++|+++++.    .     -..++|++|.++++......+..+++|  +++.+..+.
T Consensus        83 -------~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           83 -------KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             -------EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECT
T ss_pred             -------ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeeccc
Confidence                   11111  45778888887771    1     135678888888876654555667777  777776553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.15  E-value=1.7e-07  Score=90.73  Aligned_cols=160  Identities=13%  Similarity=0.093  Sum_probs=117.5

Q ss_pred             HCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          127 MRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       127 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      ...+++|.++.+...  .+| .+..+++|+.|+| .++.+...+....+++|+.|+|.++.+.+-  . -+..++.|+.|
T Consensus        42 L~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~L-s~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L  114 (605)
T 1m9s_A           42 LNSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFL-NGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSL  114 (605)
T ss_dssp             HTTCCCCBCTTCCCC--CCT-TGGGCTTCCEEEC-TTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEE
T ss_pred             CCCCCEEECcCCCCC--CCh-HHccCCCCCEEEe-eCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEE
Confidence            357888877655322  233 4667899999999 888877766567899999999999988763  2 46789999999


Q ss_pred             eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc-ceeecCCCCceE
Q 048811          207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQ  279 (318)
Q Consensus       207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~  279 (318)
                      +|.+|...+-              ..+ -..++|+.|++++|      .....++|+.|.++++... ...+..+++|+.
T Consensus       115 ~Ls~N~l~~l--------------~~l-~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~  179 (605)
T 1m9s_A          115 SLEHNGISDI--------------NGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN  179 (605)
T ss_dssp             ECTTSCCCCC--------------GGG-GGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCE
T ss_pred             EecCCCCCCC--------------ccc-cCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCE
Confidence            9999987311              000 14588999999988      2235689999999988654 223778999999


Q ss_pred             EEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          280 ATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       280 l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                      +.|..+....       + .-+..+++++.|.|+++.
T Consensus       180 L~Ls~N~i~~-------l-~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          180 LYLSKNHISD-------L-RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             EECCSSCCCB-------C-GGGTTCTTCSEEECCSEE
T ss_pred             EECcCCCCCC-------C-hHHccCCCCCEEEccCCc
Confidence            9887653211       1 237889999999998764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.15  E-value=1.4e-06  Score=83.49  Aligned_cols=176  Identities=14%  Similarity=0.169  Sum_probs=115.7

Q ss_pred             HHHHHHHH-CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCC--CCcCCCCCCceeEeeEEEeCcch-hhh
Q 048811          120 LWVSQAIM-RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADP--PDGVCFPQLKILQIYITHPENRV-TEK  195 (318)
Q Consensus       120 ~wl~~a~~-~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~-l~~  195 (318)
                      .|+..... .++++|+++........++   ..+++|++|+| .++.+...  .....+++|++|+|.++.+.+-. +..
T Consensus       322 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  397 (562)
T 3a79_B          322 EALYSVFAEMNIKMLSISDTPFIHMVCP---PSPSSFTFLNF-TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL  397 (562)
T ss_dssp             HHHHHHHHTCCCSEEEEESSCCCCCCCC---SSCCCCCEEEC-CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred             hhhhhhhccCcceEEEccCCCcccccCc---cCCCCceEEEC-CCCccccchhhhhcccCCCCEEECCCCCcCCcccchh
Confidence            45544433 4688888887643322221   45789999999 77776652  33458999999999999887643 556


Q ss_pred             hhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEE-----EeC-CCeeEEEEEecccc--
Q 048811          196 LFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAV-----IMA-PNLQLIRIVDNMLM--  267 (318)
Q Consensus       196 ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~-----i~~-P~L~~L~~~~~~~~--  267 (318)
                      .+.+++.|+.|++.++......           ... .-...++|+.|+++++-.     ... ++|++|.++++...  
T Consensus       398 ~~~~l~~L~~L~l~~N~l~~~~-----------~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~i  465 (562)
T 3a79_B          398 MTKNMSSLETLDVSLNSLNSHA-----------YDR-TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSI  465 (562)
T ss_dssp             TTTTCTTCCEEECTTSCCBSCC-----------SSC-CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCC
T ss_pred             hhcCCCCCCEEECCCCcCCCcc-----------Chh-hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCccc
Confidence            6889999999999999873210           000 001347888888888711     011 68999998887654  


Q ss_pred             ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          268 EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       268 ~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      ...+.++++|+.+++.-+....-+  .    ..+..+++++.|+++++-+
T Consensus       466 p~~~~~l~~L~~L~L~~N~l~~l~--~----~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          466 PKDVTHLQALQELNVASNQLKSVP--D----GVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             CTTTTSSCCCSEEECCSSCCCCCC--T----TSTTTCTTCCCEECCSCCB
T ss_pred             ChhhcCCCCCCEEECCCCCCCCCC--H----HHHhcCCCCCEEEecCCCc
Confidence            223447888888888655432111  1    1467788888888887643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.14  E-value=3.8e-07  Score=84.87  Aligned_cols=86  Identities=14%  Similarity=0.113  Sum_probs=62.3

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCC-C-CcCCCCCCceeEeeEEEeCcch-hhhhhcCCcccc
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADP-P-DGVCFPQLKILQIYITHPENRV-TEKLFCSCPSLT  204 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le  204 (318)
                      .+++.|+++.......--+..+..+++|++|+| .++.+... | ....+++|++|+|.++.+.+.. -...+..+++|+
T Consensus        54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  132 (455)
T 3v47_A           54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL-DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE  132 (455)
T ss_dssp             TTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC-TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred             ccccEEECcCCcccceECcccccccccCCEEeC-CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence            478888887763322222445667899999999 77765433 3 3457999999999999887643 234578899999


Q ss_pred             eeeeeeecCC
Q 048811          205 ELSLTVLIQP  214 (318)
Q Consensus       205 ~L~l~~c~~~  214 (318)
                      +|++.++...
T Consensus       133 ~L~L~~n~l~  142 (455)
T 3v47_A          133 MLVLRDNNIK  142 (455)
T ss_dssp             EEECCSSBCC
T ss_pred             EEECCCCccC
Confidence            9999999764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.13  E-value=4.3e-07  Score=85.74  Aligned_cols=181  Identities=9%  Similarity=-0.008  Sum_probs=116.8

Q ss_pred             eEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCce
Q 048811          101 SIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKI  180 (318)
Q Consensus       101 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~  180 (318)
                      .++.|.+....-..  ....++  ....+++.|+++.+....  .+. +..+++|++|+| .++.+...+   ..++|++
T Consensus        35 ~L~~L~Ls~n~l~~--~~~~~~--~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~L-s~N~l~~l~---~~~~L~~  103 (487)
T 3oja_A           35 NVKELDLSGNPLSQ--ISAADL--APFTKLELLNLSSNVLYE--TLD-LESLSTLRTLDL-NNNYVQELL---VGPSIET  103 (487)
T ss_dssp             GCCEEECCSSCCCC--CCGGGG--TTCTTCCEEECTTSCCEE--EEE-CTTCTTCCEEEC-CSSEEEEEE---ECTTCCE
T ss_pred             CccEEEeeCCcCCC--CCHHHH--hCCCCCCEEEeeCCCCCC--Ccc-cccCCCCCEEEe-cCCcCCCCC---CCCCcCE
Confidence            48888877533211  111111  112578888887663221  222 567789999999 777765543   3489999


Q ss_pred             eEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEE-EcCccceEEEeee----EE---E-
Q 048811          181 LQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVV-LFASLRGMSYHHR----AV---I-  251 (318)
Q Consensus       181 L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i-~~~~L~~L~i~~~----~~---i-  251 (318)
                      |+|.++.+.+..    ...+|.|+.|.+.++.....              ....+ ..++|+.|+++++    ..   + 
T Consensus       104 L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~--------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  165 (487)
T 3oja_A          104 LHAANNNISRVS----CSRGQGKKNIYLANNKITML--------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELA  165 (487)
T ss_dssp             EECCSSCCCCEE----ECCCSSCEEEECCSSCCCSG--------------GGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred             EECcCCcCCCCC----ccccCCCCEEECCCCCCCCC--------------CchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence            999998876643    23578999999999976311              00011 3578888888887    11   1 


Q ss_pred             -eCCCeeEEEEEecccc-ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          252 -MAPNLQLIRIVDNMLM-EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       252 -~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                       ..++|++|+++++... ......+++|+.+++..+....       +..-+..+++++.|+|+++.+
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~l~~L~~L~Ls~N~l  226 (487)
T 3oja_A          166 ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-------MGPEFQSAAGVTWISLRNNKL  226 (487)
T ss_dssp             GGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-------ECGGGGGGTTCSEEECTTSCC
T ss_pred             hhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCC-------CCHhHcCCCCccEEEecCCcC
Confidence             4689999999888754 2234468899998886553221       111266789999999988754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.13  E-value=4.4e-07  Score=80.41  Aligned_cols=54  Identities=11%  Similarity=0.174  Sum_probs=28.0

Q ss_pred             CCeeEEEEEeccccce--eecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          254 PNLQLIRIVDNMLMEY--EVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       254 P~L~~L~~~~~~~~~~--~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      ++|++|.++++.....  .+.  ++|+.+++..+.....       .. +..+++++.|.++++.+
T Consensus       253 ~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-------p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          253 SQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-------PS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             TTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-------CC-TTTSCEEEEEECTTCTT
T ss_pred             CCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-------hh-HhhCCCCCEEeccCCCC
Confidence            5666666665544311  111  4566666544321111       11 56677788887777643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.12  E-value=6.1e-07  Score=76.89  Aligned_cols=143  Identities=15%  Similarity=0.138  Sum_probs=72.5

Q ss_pred             CcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccce
Q 048811          153 MTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNT  230 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~  230 (318)
                      ++|+.|+| .++.+...+  ....+++|++|+|.++.+.+. ....+..++.|+.|++.++......+..          
T Consensus        35 ~~l~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------  102 (251)
T 3m19_A           35 ADTEKLDL-QSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGV----------  102 (251)
T ss_dssp             TTCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTT----------
T ss_pred             CCCCEEEc-cCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhH----------
Confidence            46666666 555544432  223566666666666655432 2334556666666666666542110000          


Q ss_pred             EEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHH
Q 048811          231 LTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARN  299 (318)
Q Consensus       231 ~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~  299 (318)
                        + -..++|+.|+++++        ..-..++|++|.++++...   ...++.+++|+.+++..+....-.      ..
T Consensus       103 --~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~  173 (251)
T 3m19_A          103 --F-DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP------HG  173 (251)
T ss_dssp             --T-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------TT
T ss_pred             --h-cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC------HH
Confidence              0 02355666666665        0123456666666665433   113455666666666544321111      12


Q ss_pred             HhcCCCceeEEEeecCc
Q 048811          300 LIEGVATTACLILSGGV  316 (318)
Q Consensus       300 ~l~~l~~v~~L~l~~~~  316 (318)
                      .+..+++++.|.|+++.
T Consensus       174 ~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          174 AFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTTTCTTCCEEECCSCC
T ss_pred             HHhCCCCCCEEEeeCCc
Confidence            34556666666666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.12  E-value=1.3e-05  Score=76.71  Aligned_cols=75  Identities=13%  Similarity=0.178  Sum_probs=35.0

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC---CcCCCCCCceeEeeEEEeCcchhhhhhcCCccc--
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP---DGVCFPQLKILQIYITHPENRVTEKLFCSCPSL--  203 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L--  203 (318)
                      .+++|+++.....  .+|..  .+++|++|+| .++.+...+   ....+++|++|+|.+..+....+    ..++.|  
T Consensus       101 ~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~L-s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L  171 (562)
T 3a79_B          101 DLEYLDVSHNRLQ--NISCC--PMASLRHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHLHL  171 (562)
T ss_dssp             TCCEEECTTSCCC--EECSC--CCTTCSEEEC-CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTSCE
T ss_pred             CCCEEECCCCcCC--ccCcc--ccccCCEEEC-CCCCccccCchHhhcccCcccEEecCCCccccCch----hhhhhcee
Confidence            4555555443221  33433  4555666666 554443322   22355666666666655544322    222333  


Q ss_pred             ceeeeeeec
Q 048811          204 TELSLTVLI  212 (318)
Q Consensus       204 e~L~l~~c~  212 (318)
                      +.|.+.++.
T Consensus       172 ~~L~L~~n~  180 (562)
T 3a79_B          172 SCILLDLVS  180 (562)
T ss_dssp             EEEEEEESS
T ss_pred             eEEEeeccc
Confidence            555555553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.12  E-value=4.2e-08  Score=89.65  Aligned_cols=178  Identities=17%  Similarity=0.168  Sum_probs=119.4

Q ss_pred             CCceEEEEEEccCcc---ccCCCCCccCCcccEEEecccceecCCC-----C-cCCC---------CCCceeEeeEEEeC
Q 048811          128 RNVREMEIDIIQYAP---MQLPGCVYSSMTLEVLRLHTAFRFADPP-----D-GVCF---------PQLKILQIYITHPE  189 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~~~-----~-~~~~---------~~L~~L~L~~~~~~  189 (318)
                      .++++|+++.+....   ..+|..+..+++|++|+| .++.+....     . ...+         ++|++|+|.++.+.
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L-~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL-HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEEC-CSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEEC-cCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            589999998764322   135556677899999999 877653211     0 0122         89999999999998


Q ss_pred             cchhh---hhhcCCcccceeeeeeecCCCCCCCceeeeccccceE-EEEEEcCccceEEEeeeE------------EEeC
Q 048811          190 NRVTE---KLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTL-TFVVLFASLRGMSYHHRA------------VIMA  253 (318)
Q Consensus       190 ~~~l~---~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~-~l~i~~~~L~~L~i~~~~------------~i~~  253 (318)
                      +..+.   ..+..++.|++|.+.+|...+.+...+        .. .+ -..++|+.|++++|.            ....
T Consensus       173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l--------~~~~l-~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~  243 (386)
T 2ca6_A          173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL--------LLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSW  243 (386)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH--------HHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH--------HHHHh-hcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence            66644   567799999999999997621100000        00 00 145789999999881            2356


Q ss_pred             CCeeEEEEEeccccc-------eee--cCCCCceEEEEEEEeccCCCCChhhHHHHh-cCCCceeEEEeecCcC
Q 048811          254 PNLQLIRIVDNMLME-------YEV--HEMQSIQQATLDLQHWESDTVDPQRARNLI-EGVATTACLILSGGVL  317 (318)
Q Consensus       254 P~L~~L~~~~~~~~~-------~~~--~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l-~~l~~v~~L~l~~~~~  317 (318)
                      |+|++|.++++....       ..+  +.+++|+.+++..+.....  ....+...+ ..+++++.|.++++.+
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~--g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD--AVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH--HHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH--HHHHHHHHHHhcCCCceEEEccCCcC
Confidence            899999999887541       122  3489999998865532111  022355555 6689999999998754

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.12  E-value=6.9e-07  Score=77.29  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=32.2

Q ss_pred             cCCCCChHHHHHHhhcCChhhHhhhhhcchhhHh
Q 048811           24 RISALPDSVLSNILTFLPLEDAVATSSLSQRWRH   57 (318)
Q Consensus        24 ~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~   57 (318)
                      .|+.||+||+++|||||+.+|+++++.|||+||.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            4778999999999999999999999999999995

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.11  E-value=4.4e-07  Score=82.16  Aligned_cols=177  Identities=12%  Similarity=0.112  Sum_probs=95.2

Q ss_pred             CCceEEEEEEccCccc---cCCCCCccC-CcccEEEecccceecCCCCc------CC-CCCCceeEeeEEEeCcch---h
Q 048811          128 RNVREMEIDIIQYAPM---QLPGCVYSS-MTLEVLRLHTAFRFADPPDG------VC-FPQLKILQIYITHPENRV---T  193 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~---~lp~~~~~~-~~L~~L~L~~~~~~~~~~~~------~~-~~~L~~L~L~~~~~~~~~---l  193 (318)
                      .++++|+++.+.....   .+...+..+ ++|++|+| .++.+...+..      .. .++|++|+|.++.+.+..   +
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L-s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL-GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC-CSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEEC-cCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence            4677777776532211   111112223 57788888 66665443211      12 357888888877776654   3


Q ss_pred             hhhhcCCc-ccceeeeeeecCCCCCCCceeeeccccceEEEE--E-Ec-CccceEEEeeeE-----------EE--eCCC
Q 048811          194 EKLFCSCP-SLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV--V-LF-ASLRGMSYHHRA-----------VI--MAPN  255 (318)
Q Consensus       194 ~~ll~~cp-~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~--i-~~-~~L~~L~i~~~~-----------~i--~~P~  255 (318)
                      ...+..+| .|++|++.+|...+.            ....+.  + .. ++|+.|+++++-           .+  ..++
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~------------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~  226 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASK------------NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH  226 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGS------------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT
T ss_pred             HHHHhcCCccccEeeecCCCCchh------------hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC
Confidence            44445555 788888887765211            000000  0 12 477777777761           01  1357


Q ss_pred             eeEEEEEeccccc-------eeecCCCCceEEEEEEEeccCCC-CChhhHHHHhcCCCceeEEEeecCcC
Q 048811          256 LQLIRIVDNMLME-------YEVHEMQSIQQATLDLQHWESDT-VDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       256 L~~L~~~~~~~~~-------~~~~~~~sL~~l~l~~~~~~~~~-~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      |++|+++++....       ..+..+++|+.+.+..+....-. .....+...+..+++++.|+++++.+
T Consensus       227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            8888887775432       12356778888877655321111 00223344455666777777776643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.10  E-value=9.5e-07  Score=77.54  Aligned_cols=161  Identities=15%  Similarity=0.077  Sum_probs=103.3

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      .++++++...  .-..+|..+.  ++++.|+| .++.+...+  ....+++|++|+|.++.+..-.  . ...+|.|+.|
T Consensus        11 ~l~~l~~~~~--~l~~ip~~~~--~~l~~L~L-~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L   82 (290)
T 1p9a_G           11 SHLEVNCDKR--NLTALPPDLP--KDTTILHL-SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--V-DGTLPVLGTL   82 (290)
T ss_dssp             TCCEEECTTS--CCSSCCSCCC--TTCCEEEC-TTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--C-CSCCTTCCEE
T ss_pred             CccEEECCCC--CCCcCCCCCC--CCCCEEEc-CCCcCCccCHHHhhcCCCCCEEECCCCccCccc--C-CCCCCcCCEE
Confidence            3455554432  2334555443  68889999 766654432  3447889999999888776532  1 2678899999


Q ss_pred             eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecCCC
Q 048811          207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHEMQ  275 (318)
Q Consensus       207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~~~  275 (318)
                      ++.++....-              ...--..++|+.|.++++        ..-..++|++|.+.++...   ...+..++
T Consensus        83 ~Ls~N~l~~l--------------~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  148 (290)
T 1p9a_G           83 DLSHNQLQSL--------------PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP  148 (290)
T ss_dssp             ECCSSCCSSC--------------CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             ECCCCcCCcC--------------chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc
Confidence            9988876211              100013467888888887        1124578999998887654   22356788


Q ss_pred             CceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          276 SIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       276 sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      +|+.+.+..+....-+      ...+..+++++.|.|+++.+
T Consensus       149 ~L~~L~L~~N~l~~l~------~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          149 KLEKLSLANNNLTELP------AGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             TCCEEECTTSCCSCCC------TTTTTTCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccC------HHHhcCcCCCCEEECCCCcC
Confidence            8999888655322111      24567889999999988754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.10  E-value=2.7e-06  Score=75.28  Aligned_cols=169  Identities=17%  Similarity=0.184  Sum_probs=110.8

Q ss_pred             HCCceEEEEEEccCccccCCCCC--ccCCcccEEEecccceecCCCCcC-CC-----CCCceeEeeEEEeCcchhhhhhc
Q 048811          127 MRNVREMEIDIIQYAPMQLPGCV--YSSMTLEVLRLHTAFRFADPPDGV-CF-----PQLKILQIYITHPENRVTEKLFC  198 (318)
Q Consensus       127 ~~~l~~L~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~~~~~~~-~~-----~~L~~L~L~~~~~~~~~l~~ll~  198 (318)
                      ..++++|+++..... ..+|..+  ...++|++|+| .++.+...|... .+     ++|++|+|.++.+.+. ....+.
T Consensus        94 l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~L-s~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~  170 (312)
T 1wwl_A           94 ISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNL-RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVR  170 (312)
T ss_dssp             TSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEE-ESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCC
T ss_pred             cCCccEEEccCCccc-chhHHHHHHhcCCCccEEEc-cCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhc
Confidence            368999999987432 2455544  56789999999 777766554322 23     8999999999987653 234567


Q ss_pred             CCcccceeeeeeecCCCCCCCceeeeccccceEEEE-EEcCccceEEEeee-EE----------EeCCCeeEEEEEeccc
Q 048811          199 SCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV-VLFASLRGMSYHHR-AV----------IMAPNLQLIRIVDNML  266 (318)
Q Consensus       199 ~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~-i~~~~L~~L~i~~~-~~----------i~~P~L~~L~~~~~~~  266 (318)
                      .+++|++|++.++.....    ..+      ...+. -..++|+.|+++++ +.          ...++|++|+++++..
T Consensus       171 ~l~~L~~L~Ls~N~l~~~----~~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l  240 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGE----RGL------ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL  240 (312)
T ss_dssp             CCSSCCEEECCSCTTCHH----HHH------HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred             cCCCCCEEECCCCCcCcc----hHH------HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence            899999999999975210    000      00000 13478999999887 11          1348999999988865


Q ss_pred             cc----eeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          267 ME----YEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       267 ~~----~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      ..    ..+..+++|+.+++.-+....-       ...+.  ++++.|+|+++.+
T Consensus       241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-------p~~~~--~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          241 RDAAGAPSCDWPSQLNSLNLSFTGLKQV-------PKGLP--AKLSVLDLSYNRL  286 (312)
T ss_dssp             CSSCCCSCCCCCTTCCEEECTTSCCSSC-------CSSCC--SEEEEEECCSSCC
T ss_pred             CcccchhhhhhcCCCCEEECCCCccChh-------hhhcc--CCceEEECCCCCC
Confidence            42    3445678999988865532211       11111  7899999988764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.09  E-value=2.6e-07  Score=82.52  Aligned_cols=161  Identities=14%  Similarity=0.150  Sum_probs=112.6

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcch-hhhhhcCCcccc
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRV-TEKLFCSCPSLT  204 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le  204 (318)
                      .++++|+++....  ..+|..++  ++|++|+| .++.+...+.  ...+++|++|+|.++.+.+.. ....+..+ .|+
T Consensus       102 ~~L~~L~L~~n~l--~~l~~~~~--~~L~~L~l-~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~  175 (332)
T 2ft3_A          102 RKLQKLYISKNHL--VEIPPNLP--SSLVELRI-HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN  175 (332)
T ss_dssp             TTCCEEECCSSCC--CSCCSSCC--TTCCEEEC-CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred             CCCCEEECCCCcC--CccCcccc--ccCCEEEC-CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence            5788888876533  25666554  79999999 8777666544  357999999999999886533 33444555 899


Q ss_pred             eeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecC
Q 048811          205 ELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHE  273 (318)
Q Consensus       205 ~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~  273 (318)
                      .|++.++....-       .     . .   ..++|+.|+++++        .....++|++|.+.++...   ...+..
T Consensus       176 ~L~l~~n~l~~l-------~-----~-~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  239 (332)
T 2ft3_A          176 YLRISEAKLTGI-------P-----K-D---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF  239 (332)
T ss_dssp             CCBCCSSBCSSC-------C-----S-S---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred             EEECcCCCCCcc-------C-----c-c---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence            999999876311       0     0 0   1268899988887        1224678999999887654   224778


Q ss_pred             CCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          274 MQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       274 ~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      +++|+++.+.-+...       .+...+..+++++.|+++++.+
T Consensus       240 l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          240 LPTLRELHLDNNKLS-------RVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             CTTCCEEECCSSCCC-------BCCTTGGGCTTCCEEECCSSCC
T ss_pred             CCCCCEEECCCCcCe-------ecChhhhcCccCCEEECCCCCC
Confidence            999999988755322       1223367899999999998754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.09  E-value=3.2e-06  Score=81.71  Aligned_cols=174  Identities=13%  Similarity=0.068  Sum_probs=115.0

Q ss_pred             CCceEEEEEEccCccccCCCCC-ccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          128 RNVREMEIDIIQYAPMQLPGCV-YSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      .+++.|+++.+..  ..+|..+ ..+++|+.|+| .++.+...+  ....+++|++|+|.++.+....    +..+|.|+
T Consensus       123 ~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~  195 (597)
T 3oja_B          123 PLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSM-SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLF  195 (597)
T ss_dssp             TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC-CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCS
T ss_pred             CCCCEEEeeCCCC--CCCCHHHhccCCCCCEEEe-eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhh
Confidence            4788898887633  2566654 56789999999 777665543  3457899999999988876643    44567788


Q ss_pred             eeeeeeecCCC----CCCCceeeeccccceEEEEE-EcCccceEEEeee------EEEeCCCeeEEEEEecccc---cee
Q 048811          205 ELSLTVLIQPD----DPPANFIIQSTTLNTLTFVV-LFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM---EYE  270 (318)
Q Consensus       205 ~L~l~~c~~~~----~~~~~~~i~s~~~~~~~l~i-~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~---~~~  270 (318)
                      .|.+.++....    .....+.++...+  ..+.. ..++|+.|.++++      .....|+|++|.++++...   ...
T Consensus       196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l--~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          196 HANVSYNLLSTLAIPIAVEELDASHNSI--NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             EEECCSSCCSEEECCTTCSEEECCSSCC--CEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             hhhcccCccccccCCchhheeeccCCcc--cccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHH
Confidence            88777765421    0011122222111  11111 2368999999988      2345789999999998754   235


Q ss_pred             ecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          271 VHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       271 ~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      ++++++|+.+.+..+...       .+......+++++.|+|+++.+
T Consensus       274 ~~~l~~L~~L~Ls~N~l~-------~l~~~~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLV-------ALNLYGQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             GTTCSSCCEEECTTSCCC-------EEECSSSCCTTCCEEECCSSCC
T ss_pred             hcCccCCCEEECCCCCCC-------CCCcccccCCCCcEEECCCCCC
Confidence            778999999998654321       1123346789999999998764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.09  E-value=5.3e-07  Score=78.28  Aligned_cols=82  Identities=13%  Similarity=0.052  Sum_probs=41.6

Q ss_pred             CCceEEEEEEccCccccCCC-CCccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          128 RNVREMEIDIIQYAPMQLPG-CVYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      .++++|+++.....  .++. .+..+++|++|+| .++.+...+  ....+++|++|+|.++.+.... ...+..++.|+
T Consensus        52 ~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~  127 (276)
T 2z62_A           52 PELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLIL-TGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLK  127 (276)
T ss_dssp             TTCSEEECTTCCCC--EECTTTTTTCTTCCEEEC-TTCCCCEECTTTTTTCTTCCEEECTTSCCCCST-TCCCTTCTTCC
T ss_pred             cCCcEEECCCCcCC--ccCHHHccCCcCCCEEEC-CCCccCccChhhhcCCccccEEECCCCCccccC-chhcccCCCCC
Confidence            35666665544211  2222 3344566666666 555433322  2335666666666665544321 11255666677


Q ss_pred             eeeeeeecC
Q 048811          205 ELSLTVLIQ  213 (318)
Q Consensus       205 ~L~l~~c~~  213 (318)
                      +|++.++..
T Consensus       128 ~L~l~~n~l  136 (276)
T 2z62_A          128 ELNVAHNLI  136 (276)
T ss_dssp             EEECCSSCC
T ss_pred             EEECcCCcc
Confidence            776666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.08  E-value=2.9e-06  Score=80.77  Aligned_cols=82  Identities=16%  Similarity=0.139  Sum_probs=38.7

Q ss_pred             CceEEEEEEccCccccCCCC-CccCCcccEEEecccceecCC---CCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          129 NVREMEIDIIQYAPMQLPGC-VYSSMTLEVLRLHTAFRFADP---PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      ++++|+++....  ..++.. +..+++|++|+| .++.+...   +....+++|++|+|.++.+.+.--...+.++++|+
T Consensus        75 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  151 (549)
T 2z81_A           75 SLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNL-MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN  151 (549)
T ss_dssp             TCCEEECTTSCC--CSCCHHHHTTCTTCCEEEC-TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             cCCEEECCCCcc--CccCHHHhccCCCCcEEEC-CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence            455555544321  122222 344556666666 55544321   22335566666666655422221122345566666


Q ss_pred             eeeeeeecC
Q 048811          205 ELSLTVLIQ  213 (318)
Q Consensus       205 ~L~l~~c~~  213 (318)
                      +|.+.++..
T Consensus       152 ~L~L~~n~l  160 (549)
T 2z81_A          152 ELEIKALSL  160 (549)
T ss_dssp             EEEEEETTC
T ss_pred             eeeccCCcc
Confidence            666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.07  E-value=2.9e-07  Score=81.80  Aligned_cols=39  Identities=15%  Similarity=0.169  Sum_probs=17.2

Q ss_pred             CCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          175 FPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       175 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      +++|++|+|.++.+.+.....+...++.|++|++.++..
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence            444444444444443332333333444555555544443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.05  E-value=8.5e-06  Score=82.02  Aligned_cols=84  Identities=17%  Similarity=0.114  Sum_probs=49.6

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC--CCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCccc
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD--PPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSL  203 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L  203 (318)
                      .+++.|+++.+... ...|..+..+++|++|+| .++.+..  ++.  ...+++|++|+|.++.+.+......+..+++|
T Consensus        73 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           73 PNLRILDLGSSKIY-FLHPDAFQGLFHLFELRL-YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             TTCCEEECTTCCCC-EECTTSSCSCSSCCCEEC-TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCEEECCCCcCc-ccCHhHccCCcccCEeeC-cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            35666666554221 123555566677777777 6665543  111  34677777777777766554334456677777


Q ss_pred             ceeeeeeecC
Q 048811          204 TELSLTVLIQ  213 (318)
Q Consensus       204 e~L~l~~c~~  213 (318)
                      ++|++.++..
T Consensus       151 ~~L~Ls~N~i  160 (844)
T 3j0a_A          151 KSIDFSSNQI  160 (844)
T ss_dssp             CEEEEESSCC
T ss_pred             CEEECCCCcC
Confidence            7777776654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.05  E-value=1.2e-06  Score=85.39  Aligned_cols=78  Identities=10%  Similarity=0.000  Sum_probs=42.3

Q ss_pred             ccceEEEeee-------EE--EeCCCeeEEEEEecccc--ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCce
Q 048811          239 SLRGMSYHHR-------AV--IMAPNLQLIRIVDNMLM--EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATT  307 (318)
Q Consensus       239 ~L~~L~i~~~-------~~--i~~P~L~~L~~~~~~~~--~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v  307 (318)
                      +|+.|+++++       ..  ...|+|++|.++++...  ...+.++++|+.+.+.-+....+..-...+...+..++++
T Consensus       489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L  568 (636)
T 4eco_A          489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL  568 (636)
T ss_dssp             GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence            6777777776       11  15677788887776543  2345567777777774321000000001112334566777


Q ss_pred             eEEEeecCc
Q 048811          308 ACLILSGGV  316 (318)
Q Consensus       308 ~~L~l~~~~  316 (318)
                      +.|+|+++.
T Consensus       569 ~~L~Ls~N~  577 (636)
T 4eco_A          569 TQLQIGSND  577 (636)
T ss_dssp             CEEECCSSC
T ss_pred             CEEECCCCc
Confidence            777776654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.02  E-value=7.1e-07  Score=78.39  Aligned_cols=165  Identities=13%  Similarity=0.097  Sum_probs=114.0

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .+++.|+++...... ..|..+...++|++|+| .++.+...+....+++|++|+|.+..+..  +...+.++|.|+.|.
T Consensus        31 ~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSENLLYT-FSLATLMPYTRLTQLNL-DRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEEC-TTSCCCEEECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEEC-CCCccCcccCCCCCCcCCEEECCCCcCCc--CchhhccCCCCCEEE
Confidence            478888887653221 12344566789999999 77776655555789999999999998763  455678899999999


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecCCCC
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHEMQS  276 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~~~s  276 (318)
                      +.++....-.+..            + -..++|+.|.++++        ..-..++|+.|.+.++...   ...+..+++
T Consensus       107 l~~N~l~~l~~~~------------~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  173 (290)
T 1p9a_G          107 VSFNRLTSLPLGA------------L-RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN  173 (290)
T ss_dssp             CCSSCCCCCCSST------------T-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred             CCCCcCcccCHHH------------H-cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCC
Confidence            9999773110000            0 03478999999887        1124578999999888654   224567899


Q ss_pred             ceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          277 IQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       277 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                      |+.+.+..+....-       ..-+....+++.|.|+++-
T Consensus       174 L~~L~L~~N~l~~i-------p~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          174 LDTLLLQENSLYTI-------PKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCEEECCSSCCCCC-------CTTTTTTCCCSEEECCSCC
T ss_pred             CCEEECCCCcCCcc-------ChhhcccccCCeEEeCCCC
Confidence            99998875542211       1223445689999998764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.01  E-value=2.8e-06  Score=83.18  Aligned_cols=58  Identities=9%  Similarity=-0.037  Sum_probs=26.0

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecC-CC--CcCCCCCCceeEeeEEEe
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD-PP--DGVCFPQLKILQIYITHP  188 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~--~~~~~~~L~~L~L~~~~~  188 (318)
                      .++.|+++.+... ...|..+..+++|+.|+| .++.+.. .+  ...++++|++|+|.++.+
T Consensus       382 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L-~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l  442 (680)
T 1ziw_A          382 PLHILNLTKNKIS-KIESDAFSWLGHLEVLDL-GLNEIGQELTGQEWRGLENIFEIYLSYNKY  442 (680)
T ss_dssp             CCCEEECTTSCCC-EECTTTTTTCTTCCEEEC-CSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred             cCceEECCCCCCC-eEChhhhhCCCCCCEEeC-CCCcCccccCcccccCcccccEEecCCCCc
Confidence            5666665443211 112233344556666666 4443321 11  223455555555555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.01  E-value=5.8e-07  Score=79.53  Aligned_cols=72  Identities=10%  Similarity=0.075  Sum_probs=40.6

Q ss_pred             CccceEEEeee----E----EEe---CCCeeEEEEEeccccceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCc
Q 048811          238 ASLRGMSYHHR----A----VIM---APNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVAT  306 (318)
Q Consensus       238 ~~L~~L~i~~~----~----~i~---~P~L~~L~~~~~~~~~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~  306 (318)
                      ++|+.|+++++    .    ...   .|+|++|.++++......-.-.++|+.+++..+....-        ..+..+++
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~--------~~~~~l~~  295 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRA--------PQPDELPE  295 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSC--------CCTTSCCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCC--------chhhhCCC
Confidence            56777777766    1    011   15777777777654421111135777777755432111        11467788


Q ss_pred             eeEEEeecCcC
Q 048811          307 TACLILSGGVL  317 (318)
Q Consensus       307 v~~L~l~~~~~  317 (318)
                      ++.|+|+++.+
T Consensus       296 L~~L~L~~N~l  306 (310)
T 4glp_A          296 VDNLTLDGNPF  306 (310)
T ss_dssp             CSCEECSSTTT
T ss_pred             ccEEECcCCCC
Confidence            88888887754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.01  E-value=7.4e-06  Score=82.43  Aligned_cols=61  Identities=10%  Similarity=-0.050  Sum_probs=33.3

Q ss_pred             CCceEEEEEEccCccccCCC--CCccCCcccEEEecccceecCCC---CcCCCCCCceeEeeEEEeCc
Q 048811          128 RNVREMEIDIIQYAPMQLPG--CVYSSMTLEVLRLHTAFRFADPP---DGVCFPQLKILQIYITHPEN  190 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~  190 (318)
                      .++++|+++.+.... ..|.  .+..+++|++|+| .++.+...+   ....+++|++|+|.++.+..
T Consensus        97 ~~L~~L~Ls~n~l~~-~~~~~~~~~~L~~L~~L~L-s~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           97 FHLFELRLYFCGLSD-AVLKDGYFRNLKALTRLDL-SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             SSCCCEECTTCCCSS-CCSTTCCCSSCSSCCEEEE-ESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             cccCEeeCcCCCCCc-ccccCccccccCCCCEEEC-CCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            356666666542221 1222  2445677777777 555544332   13467777777777766543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.01  E-value=4.2e-08  Score=91.53  Aligned_cols=84  Identities=14%  Similarity=0.080  Sum_probs=44.5

Q ss_pred             CceEEEEEEccCcc---ccCCCCCccCCcccEEEecccceecCC-CC------cCCCCCCceeEeeEEEeCcch---hhh
Q 048811          129 NVREMEIDIIQYAP---MQLPGCVYSSMTLEVLRLHTAFRFADP-PD------GVCFPQLKILQIYITHPENRV---TEK  195 (318)
Q Consensus       129 ~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~~-~~------~~~~~~L~~L~L~~~~~~~~~---l~~  195 (318)
                      ++++|+++.+....   ..++..+..+++|++|+| .++.+... +.      ....++|++|+|.++.+.+..   +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L-s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL-SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEEC-CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEEC-CCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence            46666665553221   133444555667777777 55543221 00      112445666666666665544   344


Q ss_pred             hhcCCcccceeeeeeecC
Q 048811          196 LFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       196 ll~~cp~Le~L~l~~c~~  213 (318)
                      .+..||.|++|++.++..
T Consensus       165 ~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHCTTCCEEECCSSBC
T ss_pred             HHhhCCCCCEEECcCCCc
Confidence            455566666666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.97  E-value=6.5e-06  Score=69.74  Aligned_cols=164  Identities=9%  Similarity=0.029  Sum_probs=96.9

Q ss_pred             CCceEEEEEEccCccccCCC-CCccCCcccEEEecccce-ecCCC--CcCCCCCCceeEeeE-EEeCcchhhhhhcCCcc
Q 048811          128 RNVREMEIDIIQYAPMQLPG-CVYSSMTLEVLRLHTAFR-FADPP--DGVCFPQLKILQIYI-THPENRVTEKLFCSCPS  202 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~-~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~  202 (318)
                      ..+++|+++....  ..+|. .+..+++|++|+| .++. +...+  ...++++|++|+|.+ ..+..- -...+.++++
T Consensus        31 ~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l-~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~  106 (239)
T 2xwt_C           31 PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYV-SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPL  106 (239)
T ss_dssp             TTCCEEEEESCCC--SEECTTTTTTCTTCCEEEE-ECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTT
T ss_pred             CcccEEEEeCCcc--eEECHHHccCCCCCcEEeC-CCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCC
Confidence            3788888877632  23444 4456788999999 6664 43333  334788999999987 444432 2345678899


Q ss_pred             cceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccc---eEEEeee---E------EEeCCCee-EEEEEeccccc-
Q 048811          203 LTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLR---GMSYHHR---A------VIMAPNLQ-LIRIVDNMLME-  268 (318)
Q Consensus       203 Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~---~L~i~~~---~------~i~~P~L~-~L~~~~~~~~~-  268 (318)
                      |++|.+.++....-              ..+ -..++|+   .|+++++   .      .-..++|+ +|.+.++.... 
T Consensus       107 L~~L~l~~n~l~~l--------------p~~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i  171 (239)
T 2xwt_C          107 LKFLGIFNTGLKMF--------------PDL-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV  171 (239)
T ss_dssp             CCEEEEEEECCCSC--------------CCC-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred             CCEEeCCCCCCccc--------------ccc-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence            99999988876211              100 0223444   6777665   1      12356777 88887765431 


Q ss_pred             --eeecCCCCceEEEEEEEe-ccCCCCChhhHHHHhcCC-CceeEEEeecCcC
Q 048811          269 --YEVHEMQSIQQATLDLQH-WESDTVDPQRARNLIEGV-ATTACLILSGGVL  317 (318)
Q Consensus       269 --~~~~~~~sL~~l~l~~~~-~~~~~~~~~~~~~~l~~l-~~v~~L~l~~~~~  317 (318)
                        ..+.. ++|+++.+.-+. ...      .-...+..+ ++++.|+++.+.+
T Consensus       172 ~~~~~~~-~~L~~L~L~~n~~l~~------i~~~~~~~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          172 QGYAFNG-TKLDAVYLNKNKYLTV------IDKDAFGGVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             CTTTTTT-CEEEEEECTTCTTCCE------ECTTTTTTCSBCCSEEECTTCCC
T ss_pred             CHhhcCC-CCCCEEEcCCCCCccc------CCHHHhhccccCCcEEECCCCcc
Confidence              12222 567777664331 110      002345667 8899999887654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.95  E-value=2.2e-06  Score=75.80  Aligned_cols=144  Identities=15%  Similarity=0.086  Sum_probs=97.1

Q ss_pred             HCCceEEEEEEccCccccCC-CCCccCCcccEEEecccceecC------CCCcCCCCCCceeEeeEEEeCcch--hhhhh
Q 048811          127 MRNVREMEIDIIQYAPMQLP-GCVYSSMTLEVLRLHTAFRFAD------PPDGVCFPQLKILQIYITHPENRV--TEKLF  197 (318)
Q Consensus       127 ~~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~------~~~~~~~~~L~~L~L~~~~~~~~~--l~~ll  197 (318)
                      ..++++|+++.+..  ..++ ..+..+++|++|+| .++.+..      ......+++|++|+|.++.+..-.  ...++
T Consensus       144 ~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L-s~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          144 KPGLKVLSIAQAHS--PAFSCEQVRAFPALTSLDL-SDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             CSCCCEEEEECCSS--CCCCTTSCCCCTTCCEEEC-CSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCc--chhhHHHhccCCCCCEEEC-CCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            35889999887643  2333 44556789999999 6665321      122247899999999999886422  33456


Q ss_pred             cCCcccceeeeeeecCCCCCCCceeeeccccceEEEE--EEcCccceEEEeee-----EEEeCCCeeEEEEEeccccc-e
Q 048811          198 CSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV--VLFASLRGMSYHHR-----AVIMAPNLQLIRIVDNMLME-Y  269 (318)
Q Consensus       198 ~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~--i~~~~L~~L~i~~~-----~~i~~P~L~~L~~~~~~~~~-~  269 (318)
                      ..++.|++|++.++...+..            ...+.  ...++|+.|+++++     ...-.++|++|+++++.... .
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~------------p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~~  288 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATV------------NPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRAP  288 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCC------------CSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSCC
T ss_pred             hcCCCCCEEECCCCCCCccc------------hhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCCc
Confidence            78899999999998773210            00011  01278999999987     11113789999999987653 3


Q ss_pred             eecCCCCceEEEEEEE
Q 048811          270 EVHEMQSIQQATLDLQ  285 (318)
Q Consensus       270 ~~~~~~sL~~l~l~~~  285 (318)
                      .+..+++|+.+.+..+
T Consensus       289 ~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          289 QPDELPEVDNLTLDGN  304 (310)
T ss_dssp             CTTSCCCCSCEECSST
T ss_pred             hhhhCCCccEEECcCC
Confidence            4678899999888544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.95  E-value=1.9e-06  Score=86.68  Aligned_cols=78  Identities=9%  Similarity=0.001  Sum_probs=40.6

Q ss_pred             ccceEEEeee-------EE--EeCCCeeEEEEEecccc--ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCce
Q 048811          239 SLRGMSYHHR-------AV--IMAPNLQLIRIVDNMLM--EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATT  307 (318)
Q Consensus       239 ~L~~L~i~~~-------~~--i~~P~L~~L~~~~~~~~--~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v  307 (318)
                      +|+.|++++|       ..  ...|+|+.|.++++...  ...+.++++|+.+.|.-+....+..-...+...+..++++
T Consensus       729 ~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L  808 (876)
T 4ecn_A          729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL  808 (876)
T ss_dssp             GCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             CccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence            6777777766       11  14567777777776543  2345567777777764422000000001112334556667


Q ss_pred             eEEEeecCc
Q 048811          308 ACLILSGGV  316 (318)
Q Consensus       308 ~~L~l~~~~  316 (318)
                      +.|.|+++.
T Consensus       809 ~~L~Ls~N~  817 (876)
T 4ecn_A          809 IQLQIGSND  817 (876)
T ss_dssp             CEEECCSSC
T ss_pred             CEEECCCCC
Confidence            777666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.92  E-value=2.1e-05  Score=76.29  Aligned_cols=127  Identities=17%  Similarity=0.121  Sum_probs=70.2

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|+++.+...  .+|.   .+++|++|+| .++.+...|.  .+++|++|+|.++.+..     +-...++|+.|+
T Consensus        61 ~~L~~L~L~~N~l~--~lp~---~l~~L~~L~L-s~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----l~~~l~~L~~L~  127 (622)
T 3g06_A           61 AHITTLVIPDNNLT--SLPA---LPPELRTLEV-SGNQLTSLPV--LPPGLLELSIFSNPLTH-----LPALPSGLCKLW  127 (622)
T ss_dssp             TTCSEEEECSCCCS--CCCC---CCTTCCEEEE-CSCCCSCCCC--CCTTCCEEEECSCCCCC-----CCCCCTTCCEEE
T ss_pred             CCCcEEEecCCCCC--CCCC---cCCCCCEEEc-CCCcCCcCCC--CCCCCCEEECcCCcCCC-----CCCCCCCcCEEE
Confidence            35666666554322  3443   2456666666 5555544443  56666666666655433     112456666666


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----EEEeCCCeeEEEEEeccccceeecCCCCceEEEEE
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----AVIMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLD  283 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~~i~~P~L~~L~~~~~~~~~~~~~~~~sL~~l~l~  283 (318)
                      +.++....-              .   ...++|+.|++++|    +.-..++|+.|.+.++...... ..+++|+.+++.
T Consensus       128 L~~N~l~~l--------------p---~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls  189 (622)
T 3g06_A          128 IFGNQLTSL--------------P---VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP-MLPSGLQELSVS  189 (622)
T ss_dssp             CCSSCCSCC--------------C---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECC
T ss_pred             CCCCCCCcC--------------C---CCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc-ccCCCCcEEECC
Confidence            666654210              0   12367888887777    2123466777777776544222 445778877775


Q ss_pred             EE
Q 048811          284 LQ  285 (318)
Q Consensus       284 ~~  285 (318)
                      .+
T Consensus       190 ~N  191 (622)
T 3g06_A          190 DN  191 (622)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.92  E-value=2.9e-06  Score=73.53  Aligned_cols=148  Identities=13%  Similarity=0.106  Sum_probs=98.0

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      .++++|+++...... ..+..+..+++|++|++ .++.+...+.  ...+++|++|+|.++.+.+..+...+..+++|++
T Consensus        76 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~  153 (276)
T 2z62_A           76 SHLSTLILTGNPIQS-LALGAFSGLSSLQKLVA-VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (276)
T ss_dssp             TTCCEEECTTCCCCE-ECTTTTTTCTTCCEEEC-TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             cCCCEEECCCCccCc-cChhhhcCCccccEEEC-CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence            478888887653221 12345567899999999 7776655432  4589999999999998876555667888999999


Q ss_pred             eeeeeecCCCCCCCceeeeccccceEEEEEEcCccc----eEEEeee-------EEEeCCCeeEEEEEecccc---ceee
Q 048811          206 LSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLR----GMSYHHR-------AVIMAPNLQLIRIVDNMLM---EYEV  271 (318)
Q Consensus       206 L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~----~L~i~~~-------~~i~~P~L~~L~~~~~~~~---~~~~  271 (318)
                      |++.++......       ...     + -..++|+    .|+++++       .....++|++|+++++...   ...+
T Consensus       154 L~Ls~N~l~~~~-------~~~-----~-~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  220 (276)
T 2z62_A          154 LDLSSNKIQSIY-------CTD-----L-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIF  220 (276)
T ss_dssp             EECCSSCCCEEC-------GGG-----G-HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTT
T ss_pred             EECCCCCCCcCC-------HHH-----h-hhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHh
Confidence            999999772100       000     0 0123344    5666665       1223347999999887654   2345


Q ss_pred             cCCCCceEEEEEEEeccCC
Q 048811          272 HEMQSIQQATLDLQHWESD  290 (318)
Q Consensus       272 ~~~~sL~~l~l~~~~~~~~  290 (318)
                      .++++|+.+.+..+.+..+
T Consensus       221 ~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          221 DRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             TTCCSCCEEECCSSCBCCC
T ss_pred             cccccccEEEccCCccccc
Confidence            7788999988876655433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=1.7e-06  Score=87.07  Aligned_cols=80  Identities=11%  Similarity=0.109  Sum_probs=59.4

Q ss_pred             CceEEEEEEccCccccCCC--CCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcc-cce
Q 048811          129 NVREMEIDIIQYAPMQLPG--CVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPS-LTE  205 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le~  205 (318)
                      ++++|+++.+...  .+|.  .+..+++|+.|+| .++.+...|....+++|++|+|.++.+.  .+..-+..++. |+.
T Consensus       549 ~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~L-s~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~  623 (876)
T 4ecn_A          549 KIQIFYMGYNNLE--EFPASASLQKMVKLGLLDC-VHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG  623 (876)
T ss_dssp             TCCEEECCSSCCC--BCCCHHHHTTCTTCCEEEC-TTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred             CccEEEeeCCcCC--ccCChhhhhcCCCCCEEEC-CCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence            7888888776443  6777  6777888888888 7776665565557888888888888776  34445677888 888


Q ss_pred             eeeeeecC
Q 048811          206 LSLTVLIQ  213 (318)
Q Consensus       206 L~l~~c~~  213 (318)
                      |.|.++..
T Consensus       624 L~Ls~N~L  631 (876)
T 4ecn_A          624 LGFSHNKL  631 (876)
T ss_dssp             EECCSSCC
T ss_pred             EECcCCCC
Confidence            88888865

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.91  E-value=5e-06  Score=75.34  Aligned_cols=190  Identities=15%  Similarity=0.157  Sum_probs=102.5

Q ss_pred             HHHHHHHhhCCCcceEeEEEEEeeCCCC-CC---ChhHHHHHH-HHCCceEEEEEEccCc--------cccCCCCCccCC
Q 048811           87 NNFIESVMAGTDPVSIHTFSLRSVNAIR-RD---RFPLWVSQA-IMRNVREMEIDIIQYA--------PMQLPGCVYSSM  153 (318)
Q Consensus        87 ~~~~~~v~~~~~~~~l~~l~l~~~~~~~-~~---~~~~wl~~a-~~~~l~~L~l~~~~~~--------~~~lp~~~~~~~  153 (318)
                      +.|.+|+...... .++.+.+.... ++ ..   .+..+...+ ...+++.|.+......        ...+...+..++
T Consensus        95 ~~~~~fl~~~~~~-~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P  172 (362)
T 2ra8_A           95 NLMDKILKDKKLP-SLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP  172 (362)
T ss_dssp             CHHHHHHHCTTGG-GCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCT
T ss_pred             HHHHHHhcCCCch-hcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCC
Confidence            3455566554333 48888887432 22 11   122233212 1268999987543111        112334445678


Q ss_pred             cccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhc-CCcccceeeeeeecCCCCCCCceeeeccccceEE
Q 048811          154 TLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFC-SCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLT  232 (318)
Q Consensus       154 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~  232 (318)
                      +|+.|.| .++.....+. ...++|++|.|..+.+.++.+..+.. .+|+|+.|.|..+.....+  ...+..  +. ..
T Consensus       173 ~L~~L~L-~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~--~~~~~~--l~-~~  245 (362)
T 2ra8_A          173 LLNNLKI-KGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF--DGDMNV--FR-PL  245 (362)
T ss_dssp             TCCEEEE-ECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC--CSCGGG--TG-GG
T ss_pred             CCcEEEE-eCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc--chhHHH--HH-HH
Confidence            9999999 6663223333 45899999999998887776766653 7999999999643210000  000000  00 00


Q ss_pred             EEE-EcCccceEEEeee-----------EEEeCCCeeEEEEEeccccc-------eeecCCCCceEEEEEEE
Q 048811          233 FVV-LFASLRGMSYHHR-----------AVIMAPNLQLIRIVDNMLME-------YEVHEMQSIQQATLDLQ  285 (318)
Q Consensus       233 l~i-~~~~L~~L~i~~~-----------~~i~~P~L~~L~~~~~~~~~-------~~~~~~~sL~~l~l~~~  285 (318)
                      +.. ..|+|+.|.+.+|           ..-..|+|++|.++.+....       ..+.++++|+.+.+..+
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            000 2467777777765           01135667777775554321       01234566777666433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.90  E-value=3.3e-07  Score=75.64  Aligned_cols=63  Identities=16%  Similarity=0.079  Sum_probs=41.2

Q ss_pred             CCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          148 CVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       148 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .+..+++|++|+| .++.+...|....+++|++|+|.++.+.+  +...+..+|.|+.|++.++..
T Consensus        43 ~~~~l~~L~~L~l-s~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l  105 (198)
T 1ds9_A           43 TLSTLKACKHLAL-STNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI  105 (198)
T ss_dssp             HHHHTTTCSEEEC-SEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEEC
T ss_pred             HHhcCCCCCEEEC-CCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcC
Confidence            4455667777777 66666555544466777777777777653  445555667777777777765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.87  E-value=3.7e-06  Score=77.88  Aligned_cols=42  Identities=26%  Similarity=0.513  Sum_probs=37.8

Q ss_pred             CCCccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhcCc
Q 048811           20 VPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTS   61 (318)
Q Consensus        20 ~~~d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~~   61 (318)
                      ...|.|+.||+|++.+||+||+.+|+++++.|||+|+++...
T Consensus        10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999999999999999975443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.87  E-value=2.9e-06  Score=73.30  Aligned_cols=117  Identities=14%  Similarity=0.133  Sum_probs=78.2

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|+++.....  .++. +..+++|+.|+| .++.+...+.... ++|++|+|.++.+.+-  . -+..++.|+.|+
T Consensus        63 ~~L~~L~L~~N~i~--~~~~-l~~l~~L~~L~L-~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~  134 (263)
T 1xeu_A           63 TNLKELHLSHNQIS--DLSP-LKDLTKLEELSV-NRNRLKNLNGIPS-ACLSRLFLDNNELRDT--D-SLIHLKNLEILS  134 (263)
T ss_dssp             TTCCEEECCSSCCC--CCGG-GTTCSSCCEEEC-CSSCCSCCTTCCC-SSCCEEECCSSCCSBS--G-GGTTCTTCCEEE
T ss_pred             CCCCEEECCCCccC--CChh-hccCCCCCEEEC-CCCccCCcCcccc-CcccEEEccCCccCCC--h-hhcCcccccEEE
Confidence            57888888765322  2333 566788888888 7777666554334 8888888888877663  2 366788888888


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM  267 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~  267 (318)
                      +.++...+              ...+ -..++|+.|+++++      .....++|++|.+.++...
T Consensus       135 Ls~N~i~~--------------~~~l-~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          135 IRNNKLKS--------------IVML-GFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CTTSCCCB--------------CGGG-GGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEE
T ss_pred             CCCCcCCC--------------ChHH-ccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCccc
Confidence            88887621              1100 03467888888877      1234677888888887643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.86  E-value=1.1e-06  Score=79.41  Aligned_cols=175  Identities=12%  Similarity=0.064  Sum_probs=111.9

Q ss_pred             CCceEEEEEEccCcccc---CCCCCccCC-cccEEEecccceecCCCC--cCC-----CCCCceeEeeEEEeCcch---h
Q 048811          128 RNVREMEIDIIQYAPMQ---LPGCVYSSM-TLEVLRLHTAFRFADPPD--GVC-----FPQLKILQIYITHPENRV---T  193 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~---lp~~~~~~~-~L~~L~L~~~~~~~~~~~--~~~-----~~~L~~L~L~~~~~~~~~---l  193 (318)
                      +++++|+++.+......   +...+..++ +|++|+| .++.+.....  ...     +++|++|+|.++.+.+..   +
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L-s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNL-SGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEEC-CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEEC-cCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            45999998876322111   112333455 8999999 7776654321  112     389999999999987654   5


Q ss_pred             hhhhcCC-cccceeeeeeecCCCCCCCceeeeccccceEEEE--EE--cCccceEEEeee-EE-----------EeC-CC
Q 048811          194 EKLFCSC-PSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV--VL--FASLRGMSYHHR-AV-----------IMA-PN  255 (318)
Q Consensus       194 ~~ll~~c-p~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~--i~--~~~L~~L~i~~~-~~-----------i~~-P~  255 (318)
                      ...+..+ +.|++|++.+|...+.            ....+.  +.  ..+|+.|++++| +.           ... ++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~------------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~  168 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSK------------SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN  168 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGS------------CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred             HHHHHhCCCCccEEECcCCcCCcH------------HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence            5566667 8999999999987322            111110  11  258999999987 10           123 49


Q ss_pred             eeEEEEEeccccce-------eecCC-CCceEEEEEEEeccCCCCChhhHHHHhcC-CCceeEEEeecCcC
Q 048811          256 LQLIRIVDNMLMEY-------EVHEM-QSIQQATLDLQHWESDTVDPQRARNLIEG-VATTACLILSGGVL  317 (318)
Q Consensus       256 L~~L~~~~~~~~~~-------~~~~~-~sL~~l~l~~~~~~~~~~~~~~~~~~l~~-l~~v~~L~l~~~~~  317 (318)
                      |++|.++++.....       .+... ++|+++++..+.....  ....+...+.. .++++.|.|+++.+
T Consensus       169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~--~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK--SYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS--CHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh--HHHHHHHHHhcCCCCceEEECcCCCC
Confidence            99999998865311       23455 4899998876542221  24446666666 45999999998764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.86  E-value=8e-06  Score=79.29  Aligned_cols=146  Identities=19%  Similarity=0.124  Sum_probs=95.2

Q ss_pred             eEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCce
Q 048811          101 SIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKI  180 (318)
Q Consensus       101 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~  180 (318)
                      .++.|.+....-.   .+..     ...+++.|+++.+...  .+|.   ..++|++|+| .++.+...|.  .+++|++
T Consensus        62 ~L~~L~L~~N~l~---~lp~-----~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~L-s~N~l~~l~~--~l~~L~~  125 (622)
T 3g06_A           62 HITTLVIPDNNLT---SLPA-----LPPELRTLEVSGNQLT--SLPV---LPPGLLELSI-FSNPLTHLPA--LPSGLCK  125 (622)
T ss_dssp             TCSEEEECSCCCS---CCCC-----CCTTCCEEEECSCCCS--CCCC---CCTTCCEEEE-CSCCCCCCCC--CCTTCCE
T ss_pred             CCcEEEecCCCCC---CCCC-----cCCCCCEEEcCCCcCC--cCCC---CCCCCCEEEC-cCCcCCCCCC--CCCCcCE
Confidence            4888887754321   1111     1358999999876432  4555   5689999999 8887766655  7889999


Q ss_pred             eEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----EEEeCCCe
Q 048811          181 LQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----AVIMAPNL  256 (318)
Q Consensus       181 L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~~i~~P~L  256 (318)
                      |+|.++.+..     +-...|+|++|++.+|....-              .   -..++|+.|.++++    +....++|
T Consensus       126 L~L~~N~l~~-----lp~~l~~L~~L~Ls~N~l~~l--------------~---~~~~~L~~L~L~~N~l~~l~~~~~~L  183 (622)
T 3g06_A          126 LWIFGNQLTS-----LPVLPPGLQELSVSDNQLASL--------------P---ALPSELCKLWAYNNQLTSLPMLPSGL  183 (622)
T ss_dssp             EECCSSCCSC-----CCCCCTTCCEEECCSSCCSCC--------------C---CCCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred             EECCCCCCCc-----CCCCCCCCCEEECcCCcCCCc--------------C---CccCCCCEEECCCCCCCCCcccCCCC
Confidence            9998887654     333569999999999976211              1   02356777777766    22344778


Q ss_pred             eEEEEEeccccceeecCCCCceEEEEEEE
Q 048811          257 QLIRIVDNMLMEYEVHEMQSIQQATLDLQ  285 (318)
Q Consensus       257 ~~L~~~~~~~~~~~~~~~~sL~~l~l~~~  285 (318)
                      ++|.++++..... -..+++|+.+.+.-+
T Consensus       184 ~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N  211 (622)
T 3g06_A          184 QELSVSDNQLASL-PTLPSELYKLWAYNN  211 (622)
T ss_dssp             CEEECCSSCCSCC-CCCCTTCCEEECCSS
T ss_pred             cEEECCCCCCCCC-CCccchhhEEECcCC
Confidence            8888887765421 123567777766544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.84  E-value=1.9e-05  Score=66.16  Aligned_cols=120  Identities=20%  Similarity=0.177  Sum_probs=65.1

Q ss_pred             CcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccce
Q 048811          153 MTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNT  230 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~  230 (318)
                      ++|+.|+| .+..+...+  ....+++|++|+|.++.+... ....+.+++.|+.|+|.++....-+       ...   
T Consensus        32 ~~l~~L~l-~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~-------~~~---   99 (220)
T 2v9t_B           32 ETITEIRL-EQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKITELP-------KSL---   99 (220)
T ss_dssp             TTCCEEEC-CSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCCCCC-------TTT---
T ss_pred             cCCCEEEC-CCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCCccC-------HhH---
Confidence            46677777 555443332  233566777777766665432 1334556677777777766552110       000   


Q ss_pred             EEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEec
Q 048811          231 LTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHW  287 (318)
Q Consensus       231 ~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~  287 (318)
                        + -..++|+.|+++++        ..-..++|++|.+.++...   ...+..+++|+.+.+..+.+
T Consensus       100 --f-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          100 --F-EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             --T-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             --c-cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence              0 02345555555554        1113467777777776543   22356678888877765544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.84  E-value=7e-06  Score=67.98  Aligned_cols=61  Identities=18%  Similarity=0.176  Sum_probs=26.7

Q ss_pred             cCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          151 SSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       151 ~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .+++|++|+| .++.+...+.  ...+++|++|+|.++.+..- ....+..++.|++|++.++..
T Consensus        50 ~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l  112 (208)
T 2o6s_A           50 ELTSLTQLYL-GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKELALNTNQL  112 (208)
T ss_dssp             TCTTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccCcEEEC-CCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEEEcCCCcC
Confidence            3445555555 4443333322  12445555555554444321 122234455555555554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.83  E-value=3.2e-05  Score=65.19  Aligned_cols=135  Identities=19%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             CcccEEEecccceecCC-CC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccce
Q 048811          153 MTLEVLRLHTAFRFADP-PD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNT  230 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~-~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~  230 (318)
                      ++|+.|+| .++.+... +. ...+++|++|+|.++.+..- -...+.+++.|+.|+|.++....-.       ...   
T Consensus        40 ~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~-------~~~---  107 (229)
T 3e6j_A           40 TNAQILYL-HDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLTVLP-------SAV---  107 (229)
T ss_dssp             TTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-------TTT---
T ss_pred             CCCCEEEc-CCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCCccC-------hhH---
Confidence            45666666 55444433 11 23556666666665554321 1233455566666666655441100       000   


Q ss_pred             EEEEEEcCccceEEEeee-------EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHH
Q 048811          231 LTFVVLFASLRGMSYHHR-------AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNL  300 (318)
Q Consensus       231 ~~l~i~~~~L~~L~i~~~-------~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~  300 (318)
                        + -..++|+.|.++++       .....++|++|.+.++...   ...+..+++|+.+.+..+.+..+..+...+..+
T Consensus       108 --~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~  184 (229)
T 3e6j_A          108 --F-DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNW  184 (229)
T ss_dssp             --T-TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHH
T ss_pred             --h-CcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHH
Confidence              0 02244555555544       0123567777777776543   224667888888877665543332223344445


Q ss_pred             hc
Q 048811          301 IE  302 (318)
Q Consensus       301 l~  302 (318)
                      +.
T Consensus       185 ~~  186 (229)
T 3e6j_A          185 VA  186 (229)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.83  E-value=1.4e-06  Score=85.06  Aligned_cols=81  Identities=14%  Similarity=0.103  Sum_probs=57.1

Q ss_pred             CCceEEEEEEccCccccCCC--CCccCCcccEEEecccceec-CCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcc-c
Q 048811          128 RNVREMEIDIIQYAPMQLPG--CVYSSMTLEVLRLHTAFRFA-DPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPS-L  203 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-L  203 (318)
                      .++++|+++.+...  .+|.  .+..+++|+.|+| .++.+. ..|....+++|++|+|.++.+.  .+..-+..++. |
T Consensus       305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L-~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L  379 (636)
T 4eco_A          305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLEC-LYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQV  379 (636)
T ss_dssp             GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEEC-CSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTC
T ss_pred             CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeC-cCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccC
Confidence            57888888776433  6777  6777788888888 666655 4454446778888888877765  34444667777 8


Q ss_pred             ceeeeeeecC
Q 048811          204 TELSLTVLIQ  213 (318)
Q Consensus       204 e~L~l~~c~~  213 (318)
                      +.|.+.++..
T Consensus       380 ~~L~Ls~N~l  389 (636)
T 4eco_A          380 ENLSFAHNKL  389 (636)
T ss_dssp             CEEECCSSCC
T ss_pred             cEEEccCCcC
Confidence            8888887765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.81  E-value=2.3e-05  Score=75.23  Aligned_cols=150  Identities=17%  Similarity=0.098  Sum_probs=91.6

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .+++.|+++.....  .+|   ..+++|+.|+| .++.+...|.  -..+|++|+|.++.+..  +..   .+++|+.|+
T Consensus        80 ~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~L-s~N~l~~ip~--l~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~  146 (571)
T 3cvr_A           80 PQITVLEITQNALI--SLP---ELPASLEYLDA-CDNRLSTLPE--LPASLKHLDVDNNQLTM--LPE---LPALLEYIN  146 (571)
T ss_dssp             TTCSEEECCSSCCS--CCC---CCCTTCCEEEC-CSSCCSCCCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEEE
T ss_pred             CCCCEEECcCCCCc--ccc---cccCCCCEEEc-cCCCCCCcch--hhcCCCEEECCCCcCCC--CCC---cCccccEEe
Confidence            46777777665333  455   23577888888 6666655544  12278888887776654  222   578888888


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeE-----EEeCCCeeEEEEEeccccce-eecCCCCc----
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRA-----VIMAPNLQLIRIVDNMLMEY-EVHEMQSI----  277 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~-----~i~~P~L~~L~~~~~~~~~~-~~~~~~sL----  277 (318)
                      +.++....              ...   ..++|+.|+++++-     .+. ++|++|+++++..... .+.+  +|    
T Consensus       147 Ls~N~l~~--------------lp~---~l~~L~~L~Ls~N~L~~lp~l~-~~L~~L~Ls~N~L~~lp~~~~--~L~~~~  206 (571)
T 3cvr_A          147 ADNNQLTM--------------LPE---LPTSLEVLSVRNNQLTFLPELP-ESLEALDVSTNLLESLPAVPV--RNHHSE  206 (571)
T ss_dssp             CCSSCCSC--------------CCC---CCTTCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCSSCCCCC---------
T ss_pred             CCCCccCc--------------CCC---cCCCcCEEECCCCCCCCcchhh-CCCCEEECcCCCCCchhhHHH--hhhccc
Confidence            88877621              111   34688888888871     122 7899999988865411 1221  45    


Q ss_pred             ---eEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          278 ---QQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       278 ---~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                         +.+.+..+...       .+..-+..+++++.|.|+++.+
T Consensus       207 ~~L~~L~Ls~N~l~-------~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          207 ETEIFFRCRENRIT-------HIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             -CCEEEECCSSCCC-------CCCGGGGGSCTTEEEECCSSSC
T ss_pred             ccceEEecCCCcce-------ecCHHHhcCCCCCEEEeeCCcC
Confidence               76666544321       1223344589999999998865

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.81  E-value=1.4e-05  Score=64.47  Aligned_cols=59  Identities=10%  Similarity=-0.021  Sum_probs=34.4

Q ss_pred             cCCcccEEEecccceecCCCCcCCC-CCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          151 SSMTLEVLRLHTAFRFADPPDGVCF-PQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       151 ~~~~L~~L~L~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .+.+|+.|+| .++.+...+....+ ++|+.|+|.++.+.+-   .-+..++.|+.|++.++..
T Consensus        17 ~~~~L~~L~l-~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l   76 (176)
T 1a9n_A           17 NAVRDRELDL-RGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI   76 (176)
T ss_dssp             CTTSCEEEEC-TTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC
T ss_pred             CcCCceEEEe-eCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc
Confidence            4556677777 66555544433333 3677777766665542   3355666677777766655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.75  E-value=1.5e-07  Score=85.84  Aligned_cols=91  Identities=12%  Similarity=0.184  Sum_probs=55.2

Q ss_pred             HHHHHHCCceEEEEEEccCccc---cCCCCCc-cCCcccEEEecccceecCC---CCcCCCCCCceeEeeEEEeCcch--
Q 048811          122 VSQAIMRNVREMEIDIIQYAPM---QLPGCVY-SSMTLEVLRLHTAFRFADP---PDGVCFPQLKILQIYITHPENRV--  192 (318)
Q Consensus       122 l~~a~~~~l~~L~l~~~~~~~~---~lp~~~~-~~~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~--  192 (318)
                      +...+...+++|+++.+.....   .+...+. .+++|++|+| .++.+.+.   .....+++|++|+|.++.+.+..  
T Consensus        66 l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~L-s~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           66 FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNL-ASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             HHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEEC-TTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred             HHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEe-cCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence            3334456788888876632211   1222222 2368888888 77654321   11124678888888888887765  


Q ss_pred             -hhhhh-cCCcccceeeeeeecC
Q 048811          193 -TEKLF-CSCPSLTELSLTVLIQ  213 (318)
Q Consensus       193 -l~~ll-~~cp~Le~L~l~~c~~  213 (318)
                       +...+ ..++.|++|+|.+|..
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~l  167 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNPL  167 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSCC
T ss_pred             HHHHHHHhcCCccceeeCCCCCC
Confidence             33333 3578888888888876

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.73  E-value=1.4e-05  Score=78.25  Aligned_cols=19  Identities=16%  Similarity=0.132  Sum_probs=14.0

Q ss_pred             HHhcCCCceeEEEeecCcC
Q 048811          299 NLIEGVATTACLILSGGVL  317 (318)
Q Consensus       299 ~~l~~l~~v~~L~l~~~~~  317 (318)
                      ..+..+++++.|+++.+.+
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l  492 (680)
T 1ziw_A          474 SPFQPLRNLTILDLSNNNI  492 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCC
T ss_pred             cccccCCCCCEEECCCCCC
Confidence            3466788888888887653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.70  E-value=2.4e-05  Score=75.15  Aligned_cols=148  Identities=12%  Similarity=0.084  Sum_probs=98.9

Q ss_pred             eEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCce
Q 048811          101 SIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKI  180 (318)
Q Consensus       101 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~  180 (318)
                      .++.+.+....-.   .+.     ....+++.|+++.+...  .+|. +..  +|+.|+| .++.+...|.  .+++|+.
T Consensus        81 ~L~~L~Ls~N~l~---~ip-----~~l~~L~~L~Ls~N~l~--~ip~-l~~--~L~~L~L-s~N~l~~lp~--~l~~L~~  144 (571)
T 3cvr_A           81 QITVLEITQNALI---SLP-----ELPASLEYLDACDNRLS--TLPE-LPA--SLKHLDV-DNNQLTMLPE--LPALLEY  144 (571)
T ss_dssp             TCSEEECCSSCCS---CCC-----CCCTTCCEEECCSSCCS--CCCC-CCT--TCCEEEC-CSSCCSCCCC--CCTTCCE
T ss_pred             CCCEEECcCCCCc---ccc-----cccCCCCEEEccCCCCC--Ccch-hhc--CCCEEEC-CCCcCCCCCC--cCccccE
Confidence            4777777643221   111     11258999998876433  3666 333  9999999 8877766665  7899999


Q ss_pred             eEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEEEe----CCCe
Q 048811          181 LQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIM----APNL  256 (318)
Q Consensus       181 L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~i~----~P~L  256 (318)
                      |+|.++.+..  +..   .+++|+.|++.++....              ...  +. ++|+.|+++++-...    .++|
T Consensus       145 L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~--------------lp~--l~-~~L~~L~Ls~N~L~~lp~~~~~L  202 (571)
T 3cvr_A          145 INADNNQLTM--LPE---LPTSLEVLSVRNNQLTF--------------LPE--LP-ESLEALDVSTNLLESLPAVPVRN  202 (571)
T ss_dssp             EECCSSCCSC--CCC---CCTTCCEEECCSSCCSC--------------CCC--CC-TTCCEEECCSSCCSSCCCCC---
T ss_pred             EeCCCCccCc--CCC---cCCCcCEEECCCCCCCC--------------cch--hh-CCCCEEECcCCCCCchhhHHHhh
Confidence            9999988764  232   67899999999998731              111  22 889999998871111    1267


Q ss_pred             -------eEEEEEecccc--ceeecCCCCceEEEEEEEe
Q 048811          257 -------QLIRIVDNMLM--EYEVHEMQSIQQATLDLQH  286 (318)
Q Consensus       257 -------~~L~~~~~~~~--~~~~~~~~sL~~l~l~~~~  286 (318)
                             +.|.++++...  ...+.++++|+.+++..+.
T Consensus       203 ~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          203 HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             -----CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence                   99999887654  2335569999998886553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.68  E-value=2.4e-05  Score=70.84  Aligned_cols=62  Identities=13%  Similarity=0.152  Sum_probs=31.8

Q ss_pred             CCCeeEEEEEecccc----ce--eecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          253 APNLQLIRIVDNMLM----EY--EVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       253 ~P~L~~L~~~~~~~~----~~--~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                      .|+|++|.+..+...    ..  ....+|.|+.+.|..+..  .......+...+..+++++.|+|+.+.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L--~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL--TDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC--BHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC--ChHHHHHHHhhcccCCcceEEECCCCc
Confidence            467777777665432    01  112466777777643311  000012233334557778888877664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.68  E-value=7e-06  Score=68.01  Aligned_cols=128  Identities=17%  Similarity=0.139  Sum_probs=81.3

Q ss_pred             cccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCC
Q 048811          142 PMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPA  219 (318)
Q Consensus       142 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~  219 (318)
                      ...+|..+  .++|++|+| .++.+...+.  ...+++|++|+|.++.+..- ....+..++.|++|++.++......  
T Consensus        19 l~~~p~~~--~~~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~--   92 (208)
T 2o6s_A           19 RTSVPTGI--PAQTTYLDL-ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLP--   92 (208)
T ss_dssp             CSSCCSCC--CTTCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCC--
T ss_pred             ccCCCCCC--CCCCcEEEc-CCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccC--
Confidence            34555443  358999999 7777665543  34899999999999887643 3455778999999999998762110  


Q ss_pred             ceeeeccccceEEEEEEcCccceEEEeee----E----EEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEe
Q 048811          220 NFIIQSTTLNTLTFVVLFASLRGMSYHHR----A----VIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQH  286 (318)
Q Consensus       220 ~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~----~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~  286 (318)
                                ...+ -..++|+.|+++++    +    .-..++|++|.+.++...   ...+.++++|+.+.+..+.
T Consensus        93 ----------~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           93 ----------NGVF-DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             ----------TTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             ----------HhHh-cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence                      0000 02467777777766    0    123466777777665433   1224556677776665543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.68  E-value=2.7e-05  Score=71.83  Aligned_cols=40  Identities=28%  Similarity=0.473  Sum_probs=36.7

Q ss_pred             CCCCccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhh
Q 048811           19 KVPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHA   58 (318)
Q Consensus        19 ~~~~d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~l   58 (318)
                      ....|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus        13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            3467999999999999999999999999999999999863

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.67  E-value=1.2e-05  Score=68.04  Aligned_cols=162  Identities=14%  Similarity=0.088  Sum_probs=103.2

Q ss_pred             CCceEEEEEEccCccccCCC-CCccCCcccEEEeccc-ceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCccc
Q 048811          128 RNVREMEIDIIQYAPMQLPG-CVYSSMTLEVLRLHTA-FRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSL  203 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L  203 (318)
                      .+++.|+++.... ...++. .+..+++|++|+| .+ ..+...+  ...++++|++|+|.++.+..  +.. +..++.|
T Consensus        55 ~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l-~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L  129 (239)
T 2xwt_C           55 PNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEI-RNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYST  129 (239)
T ss_dssp             TTCCEEEEECCSS-CCEECTTTEESCTTCCEEEE-EEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBC
T ss_pred             CCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEEC-CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-ccccccc
Confidence            4788898887531 223444 4456789999999 65 4443333  23478999999999998765  444 6788888


Q ss_pred             c---eeeeeee-cCCCCCCCceeeeccccceEEEEEEcCccc-eEEEeee--EEE-----eCCCeeEEEEEecc-cc---
Q 048811          204 T---ELSLTVL-IQPDDPPANFIIQSTTLNTLTFVVLFASLR-GMSYHHR--AVI-----MAPNLQLIRIVDNM-LM---  267 (318)
Q Consensus       204 e---~L~l~~c-~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~-~L~i~~~--~~i-----~~P~L~~L~~~~~~-~~---  267 (318)
                      +   .|++.++ ... .      +....     + -..++|+ .|+++++  ..+     ..++|++|.+.++. ..   
T Consensus       130 ~~L~~L~l~~N~~l~-~------i~~~~-----~-~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~  196 (239)
T 2xwt_C          130 DIFFILEITDNPYMT-S------IPVNA-----F-QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID  196 (239)
T ss_dssp             CSEEEEEEESCTTCC-E------ECTTT-----T-TTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEEC
T ss_pred             ccccEEECCCCcchh-h------cCccc-----c-cchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCC
Confidence            8   9999888 441 0      00000     0 0246777 8887776  111     23689999998884 43   


Q ss_pred             ceeecCC-CCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          268 EYEVHEM-QSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       268 ~~~~~~~-~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                      ...+.++ ++|+.+.+..+....-+  .       ..+++++.|.+++..
T Consensus       197 ~~~~~~l~~~L~~L~l~~N~l~~l~--~-------~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          197 KDAFGGVYSGPSLLDVSQTSVTALP--S-------KGLEHLKELIARNTW  237 (239)
T ss_dssp             TTTTTTCSBCCSEEECTTCCCCCCC--C-------TTCTTCSEEECTTC-
T ss_pred             HHHhhccccCCcEEECCCCccccCC--h-------hHhccCceeeccCcc
Confidence            2346678 89999988654322111  1       167889999887653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.66  E-value=4.3e-05  Score=64.39  Aligned_cols=122  Identities=16%  Similarity=0.104  Sum_probs=79.7

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      .+++.|+++...... ..|..+..+++|++|+| .++.+...+.  ...+++|++|+|.++.+..- ....+..+++|+.
T Consensus        40 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L-~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILYLHDNQITK-LEPGVFDSLINLKELYL-GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCCEEEcCCCccCc-cCHHHhhCccCCcEEEC-CCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCe
Confidence            477888877653221 12344556788888888 7776655543  24788888888888877643 2445677888888


Q ss_pred             eeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEeccc
Q 048811          206 LSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNML  266 (318)
Q Consensus       206 L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~  266 (318)
                      |.+.++....-       ..   ..    -..++|+.|+++++        ..-..++|++|.+.++..
T Consensus       117 L~Ls~N~l~~l-------p~---~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          117 LFMCCNKLTEL-------PR---GI----ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             EECCSSCCCSC-------CT---TG----GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             EeccCCccccc-------Cc---cc----ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            88888876211       00   00    13467888888776        122357899999988764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.64  E-value=4.5e-06  Score=70.05  Aligned_cols=128  Identities=17%  Similarity=0.192  Sum_probs=84.2

Q ss_pred             ccCCCCCccCCcccEEEecccceecCC-CC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCC
Q 048811          143 MQLPGCVYSSMTLEVLRLHTAFRFADP-PD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPA  219 (318)
Q Consensus       143 ~~lp~~~~~~~~L~~L~L~~~~~~~~~-~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~  219 (318)
                      ..+|..+  .+.++.|+| .+..+... +.  ...+++|++|+|.+..+..- ....+.+++.|++|.|.++......  
T Consensus        24 ~~iP~~~--~~~~~~L~L-~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~--   97 (220)
T 2v70_A           24 NKIPEHI--PQYTAELRL-NNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLENVQ--   97 (220)
T ss_dssp             SSCCSCC--CTTCSEEEC-CSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCC--
T ss_pred             ccCccCC--CCCCCEEEc-CCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccCccC--
Confidence            3466543  346789999 77665544 22  34899999999999887653 2335778999999999999773110  


Q ss_pred             ceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEec
Q 048811          220 NFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHW  287 (318)
Q Consensus       220 ~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~  287 (318)
                                ...+ -..++|+.|+++++        .....++|++|.+.++...   ...+..+++|+.+.+..+.+
T Consensus        98 ----------~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           98 ----------HKMF-KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             ----------GGGG-TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             ----------HhHh-cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence                      0000 03467888888876        1224577888888776543   23466778888887766554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.63  E-value=1.3e-05  Score=73.90  Aligned_cols=37  Identities=30%  Similarity=0.556  Sum_probs=35.2

Q ss_pred             CCccCCCCChH----HHHHHhhcCChhhHhhhhhcchhhHh
Q 048811           21 PEDRISALPDS----VLSNILTFLPLEDAVATSSLSQRWRH   57 (318)
Q Consensus        21 ~~d~is~LPd~----vL~~Ils~L~~~d~~~ts~vskrWr~   57 (318)
                      ..|.|+.||+|    ++.+||+||+.+++++++.|||+|++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            57899999999    99999999999999999999999994

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.58  E-value=7.1e-05  Score=72.07  Aligned_cols=33  Identities=9%  Similarity=0.231  Sum_probs=21.6

Q ss_pred             CCCeeEEEEEecccc----ceeecCCCCceEEEEEEE
Q 048811          253 APNLQLIRIVDNMLM----EYEVHEMQSIQQATLDLQ  285 (318)
Q Consensus       253 ~P~L~~L~~~~~~~~----~~~~~~~~sL~~l~l~~~  285 (318)
                      .++|++|.++++...    ...++.+++|+++.+..+
T Consensus       147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            466777777666432    234567888998887654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.56  E-value=2.2e-05  Score=73.35  Aligned_cols=77  Identities=17%  Similarity=0.164  Sum_probs=49.0

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|+++.+...  .+| .+..+++|++|++ .++.+...|.  ..++|++|+|.++.+..  +.. +.+++.|+.|.
T Consensus       131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l-~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDV-DNNSLKKLPD--LPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCS--SCC-CCTTCTTCCEEEC-CSSCCSCCCC--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCC--CCc-ccCCCCCCCEEEC-CCCcCcccCC--CcccccEEECcCCcCCc--Ccc-ccCCCCCCEEE
Confidence            36777776655332  355 3566677888888 6666554443  34577777777776654  222 56778888888


Q ss_pred             eeeecC
Q 048811          208 LTVLIQ  213 (318)
Q Consensus       208 l~~c~~  213 (318)
                      +.+|..
T Consensus       202 l~~N~l  207 (454)
T 1jl5_A          202 ADNNSL  207 (454)
T ss_dssp             CCSSCC
T ss_pred             CCCCcC
Confidence            877765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.56  E-value=0.00013  Score=65.81  Aligned_cols=142  Identities=13%  Similarity=0.094  Sum_probs=69.8

Q ss_pred             cccEEEecccceecCCCC--cC-CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccce
Q 048811          154 TLEVLRLHTAFRFADPPD--GV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNT  230 (318)
Q Consensus       154 ~L~~L~L~~~~~~~~~~~--~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~  230 (318)
                      .++.|+| .+..+...+.  .. .+++|++|+|.++.+..-. ...+.+++.|+.|+|.++....-       ....   
T Consensus        40 ~l~~L~L-s~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~---  107 (361)
T 2xot_A           40 YTALLDL-SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHLHTL-------DEFL---  107 (361)
T ss_dssp             TCSEEEC-CSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEE-------CTTT---
T ss_pred             CCCEEEC-CCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcCCcC-------CHHH---
Confidence            4566666 4444433321  11 5666666666666554321 22345666666666666654100       0000   


Q ss_pred             EEEEEEcCccceEEEeee--EE------EeCCCeeEEEEEeccccc---eee---cCCCCceEEEEEEEeccCCCCChhh
Q 048811          231 LTFVVLFASLRGMSYHHR--AV------IMAPNLQLIRIVDNMLME---YEV---HEMQSIQQATLDLQHWESDTVDPQR  296 (318)
Q Consensus       231 ~~l~i~~~~L~~L~i~~~--~~------i~~P~L~~L~~~~~~~~~---~~~---~~~~sL~~l~l~~~~~~~~~~~~~~  296 (318)
                        + -..++|+.|+++++  ..      -..++|+.|.++++....   ..+   ..+++|+.++|..+....-+     
T Consensus       108 --~-~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-----  179 (361)
T 2xot_A          108 --F-SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP-----  179 (361)
T ss_dssp             --T-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC-----
T ss_pred             --h-CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC-----
Confidence              0 02245555555555  11      134677777777765431   122   46888888877654322111     


Q ss_pred             HHHHhcCCCc--eeEEEeecCc
Q 048811          297 ARNLIEGVAT--TACLILSGGV  316 (318)
Q Consensus       297 ~~~~l~~l~~--v~~L~l~~~~  316 (318)
                       ...+..+++  ++.|.|+++-
T Consensus       180 -~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          180 -LTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             -HHHHHHSCHHHHTTEECCSSC
T ss_pred             -HHHhhhccHhhcceEEecCCC
Confidence             223444454  3667776653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.48  E-value=6.3e-05  Score=62.97  Aligned_cols=123  Identities=15%  Similarity=0.125  Sum_probs=76.4

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      .+++|+++........-+..+..+++|++|+| .+..+...+  ...++++|++|+|.+..+... ....+.+++.|++|
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L-~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  110 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINF-SNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTL  110 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCEE
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEEC-CCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCEE
Confidence            45666666543222211223456788888888 666554433  345788888888888877543 34456788888888


Q ss_pred             eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEeccc
Q 048811          207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNML  266 (318)
Q Consensus       207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~  266 (318)
                      ++.++......+            ..+ -..++|+.|+++++        ..-..++|++|.+.++..
T Consensus       111 ~Ls~N~l~~~~~------------~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          111 MLRSNRITCVGN------------DSF-IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             ECTTSCCCCBCT------------TSS-TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             ECCCCcCCeECH------------hHc-CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            888887621100            000 03467888888776        112367899999988764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.45  E-value=5.1e-06  Score=67.03  Aligned_cols=81  Identities=17%  Similarity=0.075  Sum_probs=54.9

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL  208 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l  208 (318)
                      ++++|+++.....  .+|......++|+.|+| .++.+...+....+++|++|+|.++.+..- -..++..+|.|+.|++
T Consensus        20 ~L~~L~l~~n~l~--~i~~~~~~~~~L~~L~L-s~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           20 RDRELDLRGYKIP--VIENLGATLDQFDAIDF-SDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELIL   95 (176)
T ss_dssp             SCEEEECTTSCCC--SCCCGGGGTTCCSEEEC-CSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEEC
T ss_pred             CceEEEeeCCCCc--hhHHhhhcCCCCCEEEC-CCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEEC
Confidence            5677766655332  33432222348999999 777665555556788999999988887643 2344578899999999


Q ss_pred             eeecC
Q 048811          209 TVLIQ  213 (318)
Q Consensus       209 ~~c~~  213 (318)
                      .++..
T Consensus        96 ~~N~i  100 (176)
T 1a9n_A           96 TNNSL  100 (176)
T ss_dssp             CSCCC
T ss_pred             CCCcC
Confidence            88876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.44  E-value=0.0002  Score=66.78  Aligned_cols=35  Identities=14%  Similarity=0.083  Sum_probs=18.3

Q ss_pred             cccEEEecccceecCCCCcCCCCCCceeEeeEEEeC
Q 048811          154 TLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPE  189 (318)
Q Consensus       154 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  189 (318)
                      +|+.|++ .++.+...|....+++|++|++.++.+.
T Consensus       216 ~L~~L~l-~~n~l~~lp~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          216 SLESIVA-GNNILEELPELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             TCCEEEC-CSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             cccEEEC-cCCcCCcccccCCCCCCCEEECCCCcCC
Confidence            5566666 5554444444445555555555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.36  E-value=0.00013  Score=65.84  Aligned_cols=142  Identities=17%  Similarity=0.108  Sum_probs=91.9

Q ss_pred             CceEEEEEEccCccccCCCCCc--cCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          129 NVREMEIDIIQYAPMQLPGCVY--SSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~--~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      .++.|+++....  ..++...+  .+++|+.|+| .++.+...+  ....+++|++|+|.+..+..- ....+.++++|+
T Consensus        40 ~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L-~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~  115 (361)
T 2xot_A           40 YTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLL-SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALE  115 (361)
T ss_dssp             TCSEEECCSSCC--CEECTTSSSSCCTTCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred             CCCEEECCCCCC--CccChhhhhhcccccCEEEC-CCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCC
Confidence            577777766532  23444433  6789999999 777655443  345889999999998877543 244577889999


Q ss_pred             eeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----E-------EEeCCCeeEEEEEeccccc---ee
Q 048811          205 ELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----A-------VIMAPNLQLIRIVDNMLME---YE  270 (318)
Q Consensus       205 ~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~-------~i~~P~L~~L~~~~~~~~~---~~  270 (318)
                      .|+|.++....-       ....     + -..++|+.|+++++    +       ....++|+.|+++++....   ..
T Consensus       116 ~L~L~~N~i~~~-------~~~~-----~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  182 (361)
T 2xot_A          116 VLLLYNNHIVVV-------DRNA-----F-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD  182 (361)
T ss_dssp             EEECCSSCCCEE-------CTTT-----T-TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHH
T ss_pred             EEECCCCcccEE-------CHHH-----h-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHH
Confidence            999998876210       0000     0 03478888888887    1       0357899999999886542   23


Q ss_pred             ecCCCC--ceEEEEEEEec
Q 048811          271 VHEMQS--IQQATLDLQHW  287 (318)
Q Consensus       271 ~~~~~s--L~~l~l~~~~~  287 (318)
                      +..++.  ++.+.+..+.+
T Consensus       183 ~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          183 LQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             HHHSCHHHHTTEECCSSCE
T ss_pred             hhhccHhhcceEEecCCCc
Confidence            456666  36677765544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.29  E-value=0.0002  Score=56.85  Aligned_cols=106  Identities=13%  Similarity=0.052  Sum_probs=70.4

Q ss_pred             eEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC-CCCcC-CCCCC
Q 048811          101 SIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD-PPDGV-CFPQL  178 (318)
Q Consensus       101 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~-~~~~L  178 (318)
                      .++.+.+....-. ...+..++  ....++++|+++.+.....   ..+..+++|++|+| .++.+.. .|... .+++|
T Consensus        25 ~L~~L~l~~n~l~-~~~i~~~~--~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L-s~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           25 AVRELVLDNCKSN-DGKIEGLT--AEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL-SENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             SCSEEECCSCBCB-TTBCSSCC--GGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEE-ESCCCCSCCCHHHHHCTTC
T ss_pred             cCCEEECCCCCCC-hhhHHHHH--HhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEEC-cCCcCchHHHHHHhhCCCC
Confidence            4777777643311 01122221  1125789999888743332   55567789999999 7777666 44433 48999


Q ss_pred             ceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          179 KILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       179 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ++|+|.++.+.+......+..+|.|+.|++.++..
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l  132 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV  132 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence            99999999887643224567899999999999876

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.24  E-value=0.00053  Score=55.88  Aligned_cols=67  Identities=15%  Similarity=0.101  Sum_probs=45.3

Q ss_pred             ccCCCCCccCCcccEEEecccceecCCCC---cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          143 MQLPGCVYSSMTLEVLRLHTAFRFADPPD---GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       143 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ..+|..+.  .+|++|+| .+..+...+.   ...+++|++|+|.+..+... ....+.+.+.|++|+|.++..
T Consensus        21 ~~ip~~~~--~~l~~L~l-~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           21 KEIPRDIP--LHTTELLL-NDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             SSCCSCCC--TTCSEEEC-CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC
T ss_pred             CcCccCCC--CCCCEEEC-CCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcC
Confidence            34555443  37888888 6666555432   34788888888888877643 234566788888888888776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.21  E-value=0.00089  Score=53.55  Aligned_cols=104  Identities=17%  Similarity=0.118  Sum_probs=64.9

Q ss_pred             CcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccce
Q 048811          153 MTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNT  230 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~  230 (318)
                      ++|++|+| .+..+...+.  ...+++|++|+|.++.+... ....+..++.|+.|++.++.....              
T Consensus        28 ~~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~--------------   91 (177)
T 2o6r_A           28 SSATRLEL-ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSL--------------   91 (177)
T ss_dssp             TTCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCC--------------
T ss_pred             CCCcEEEe-CCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCcccc--------------
Confidence            57888888 7666555433  24678888888888776532 234467788888888888766211              


Q ss_pred             EEEEEEcCccceEEEeeeEEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEec
Q 048811          231 LTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHW  287 (318)
Q Consensus       231 ~~l~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~  287 (318)
                           ....          .-..++|++|.+.++...   ...+..+++|+.+.+..+.+
T Consensus        92 -----~~~~----------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           92 -----PNGV----------FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             -----CTTT----------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             -----CHHH----------hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence                 0000          012455666666555432   22356788999988876654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.13  E-value=0.00011  Score=57.27  Aligned_cols=82  Identities=13%  Similarity=0.028  Sum_probs=62.9

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC-CCCcC-CCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD-PPDGV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      .++++|+++.+.....   ..+..+++|++|+| .++.+.. .|... .+++|++|+|.++.+.+......+..+|.|++
T Consensus        42 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~  117 (149)
T 2je0_A           42 EELEFLSTINVGLTSI---ANLPKLNKLKKLEL-SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS  117 (149)
T ss_dssp             TTCCEEECTTSCCCCC---TTCCCCTTCCEEEC-CSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred             CCCcEEECcCCCCCCc---hhhhcCCCCCEEEC-CCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence            5788888877643332   55667889999999 8887766 44333 59999999999999876433356789999999


Q ss_pred             eeeeeecC
Q 048811          206 LSLTVLIQ  213 (318)
Q Consensus       206 L~l~~c~~  213 (318)
                      |++.+|..
T Consensus       118 L~l~~N~l  125 (149)
T 2je0_A          118 LDLFNCEV  125 (149)
T ss_dssp             EECTTCGG
T ss_pred             EeCcCCcc
Confidence            99999976

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.13  E-value=0.00018  Score=69.06  Aligned_cols=121  Identities=12%  Similarity=0.058  Sum_probs=71.2

Q ss_pred             cccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEE
Q 048811          154 TLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTF  233 (318)
Q Consensus       154 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l  233 (318)
                      .|+.|+| .++.+...|....+++|++|+|.++.+.  .+..-+..+++|+.|+|.++...              ..   
T Consensus       442 ~L~~L~L-s~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~--------------~l---  501 (567)
T 1dce_A          442 DVRVLHL-AHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALE--------------NV---  501 (567)
T ss_dssp             TCSEEEC-TTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC--------------CC---
T ss_pred             CceEEEe-cCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCC--------------CC---
Confidence            4667777 6666655555556777777777777665  24445667777777777777651              00   


Q ss_pred             EEEcCccceEEEeeeEEEeCCCeeEEEEEecccc----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeE
Q 048811          234 VVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLM----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTAC  309 (318)
Q Consensus       234 ~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~~~----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~  309 (318)
                          |.+          ...++|++|.++++...    ...++++++|+.+.+..+.....+   .....++..+++++.
T Consensus       502 ----p~l----------~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~---~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          502 ----DGV----------ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE---GIQERLAEMLPSVSS  564 (567)
T ss_dssp             ----GGG----------TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS---SCTTHHHHHCTTCSE
T ss_pred             ----ccc----------CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc---cHHHHHHHHCcccCc
Confidence                111          11355556665555432    234667888888887655432211   122345566777777


Q ss_pred             EE
Q 048811          310 LI  311 (318)
Q Consensus       310 L~  311 (318)
                      |.
T Consensus       565 L~  566 (567)
T 1dce_A          565 IL  566 (567)
T ss_dssp             EE
T ss_pred             cC
Confidence            74

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.07  E-value=0.00051  Score=56.11  Aligned_cols=59  Identities=15%  Similarity=0.164  Sum_probs=32.2

Q ss_pred             CcccEEEecccceecCCCC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          153 MTLEVLRLHTAFRFADPPD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ++|++|+| .+..+...|. ...+++|++|+|.+..+..- ....+.+++.|++|.|.++..
T Consensus        31 ~~l~~L~L-~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           31 RDVTELYL-DGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TTCCEEEC-CSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCEEEC-CCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCcc
Confidence            45666666 5554444432 23566666666666655432 123345566666666666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.06  E-value=0.00071  Score=56.43  Aligned_cols=139  Identities=9%  Similarity=0.082  Sum_probs=96.0

Q ss_pred             cEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEE
Q 048811          156 EVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVV  235 (318)
Q Consensus       156 ~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i  235 (318)
                      +.+++ .+..+...|... .++|++|+|.+..+..- ....+.+++.|+.|.|.++....-       ...     .+ -
T Consensus        14 ~~v~c-~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~-------~~~-----~~-~   77 (220)
T 2v9t_B           14 NIVDC-RGKGLTEIPTNL-PETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISEL-------APD-----AF-Q   77 (220)
T ss_dssp             TEEEC-TTSCCSSCCSSC-CTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEE-------CTT-----TT-T
T ss_pred             CEEEc-CCCCcCcCCCcc-CcCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCc-------CHH-----Hh-h
Confidence            56777 666666555433 37999999999887643 233577899999999999977210       000     00 0


Q ss_pred             EcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCC
Q 048811          236 LFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGV  304 (318)
Q Consensus       236 ~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l  304 (318)
                      ..++|+.|+++++        .....++|++|.+.++...   ...+.++++|+.+++..+....-.      ...+..+
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l  151 (220)
T 2v9t_B           78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA------KGTFSPL  151 (220)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------TTTTTTC
T ss_pred             CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC------HHHHhCC
Confidence            3478999999987        1234688999999998654   235778999999988765432211      2346778


Q ss_pred             CceeEEEeecCc
Q 048811          305 ATTACLILSGGV  316 (318)
Q Consensus       305 ~~v~~L~l~~~~  316 (318)
                      ++++.|+|+++-
T Consensus       152 ~~L~~L~L~~N~  163 (220)
T 2v9t_B          152 RAIQTMHLAQNP  163 (220)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CCCCEEEeCCCC
Confidence            999999998875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.99  E-value=0.00052  Score=61.49  Aligned_cols=82  Identities=15%  Similarity=0.079  Sum_probs=51.0

Q ss_pred             CCceEEEEEEccCccccCCCCC-ccCCcccEEEecccceecCC-C--CcCCCCCCceeEeeEE-EeCcchhhhhhcCCcc
Q 048811          128 RNVREMEIDIIQYAPMQLPGCV-YSSMTLEVLRLHTAFRFADP-P--DGVCFPQLKILQIYIT-HPENRVTEKLFCSCPS  202 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~-~--~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~  202 (318)
                      .++++|+++...  ...+|... ..+++|++|+| .++.+... +  ...++++|+++.+.+. .+..- -...+.++++
T Consensus        30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~L-s~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~  105 (350)
T 4ay9_X           30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEI-SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPN  105 (350)
T ss_dssp             TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEE-ECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTT
T ss_pred             CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEEC-cCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhccc
Confidence            478888887753  23566543 45788999999 66654332 2  2336677766544333 22211 2345678899


Q ss_pred             cceeeeeeecC
Q 048811          203 LTELSLTVLIQ  213 (318)
Q Consensus       203 Le~L~l~~c~~  213 (318)
                      |+.|.+.++..
T Consensus       106 L~~L~l~~n~l  116 (350)
T 4ay9_X          106 LQYLLISNTGI  116 (350)
T ss_dssp             CCEEEEEEECC
T ss_pred             ccccccccccc
Confidence            99999988876

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.98  E-value=0.00039  Score=56.70  Aligned_cols=118  Identities=14%  Similarity=0.131  Sum_probs=79.7

Q ss_pred             ccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEE
Q 048811          155 LEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV  234 (318)
Q Consensus       155 L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~  234 (318)
                      -+.+++ .+..+...|... +++|++|+|.+..+....-...+...+.|++|++.++......+            ..+ 
T Consensus        10 ~~~l~~-s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~-   74 (192)
T 1w8a_A           10 GTTVDC-TGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP------------NAF-   74 (192)
T ss_dssp             TTEEEC-TTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT------------TTT-
T ss_pred             CCEEEc-CCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH------------hHc-
Confidence            377888 777666666433 45999999999987654333457889999999999997731100            000 


Q ss_pred             EEcCccceEEEeee----E----EEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEec
Q 048811          235 VLFASLRGMSYHHR----A----VIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHW  287 (318)
Q Consensus       235 i~~~~L~~L~i~~~----~----~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~  287 (318)
                      -..++|+.|+++++    +    ....++|++|.++++...   ...+..+++|+.+.+..+.+
T Consensus        75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            03467888888887    1    124578888888887654   23466788888888766554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.91  E-value=1.3e-05  Score=72.85  Aligned_cols=150  Identities=9%  Similarity=0.029  Sum_probs=106.6

Q ss_pred             CcccEEEecccceecCCCC-------cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeec
Q 048811          153 MTLEVLRLHTAFRFADPPD-------GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQS  225 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~~~-------~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s  225 (318)
                      ++|++|+| .++.+.....       ....++|++|+|.++.+.+..+..+...+++|++|+|.+|...+.         
T Consensus        72 ~~L~~L~L-s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~---------  141 (372)
T 3un9_A           72 SSLRQLNL-AGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE---------  141 (372)
T ss_dssp             TTCCEEEC-TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH---------
T ss_pred             hhCCEEEe-cCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH---------
Confidence            57999999 7776543211       013479999999999998887888888889999999999977321         


Q ss_pred             cccceEEEE--E--EcCccceEEEeee------------EEEeCCCeeEEEEEecccc-------ceeecCCCCceEEEE
Q 048811          226 TTLNTLTFV--V--LFASLRGMSYHHR------------AVIMAPNLQLIRIVDNMLM-------EYEVHEMQSIQQATL  282 (318)
Q Consensus       226 ~~~~~~~l~--i--~~~~L~~L~i~~~------------~~i~~P~L~~L~~~~~~~~-------~~~~~~~~sL~~l~l  282 (318)
                         ....+.  +  ..++|+.|++++|            .....++|++|+++++...       ...+...++|+++++
T Consensus       142 ---~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L  218 (372)
T 3un9_A          142 ---ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV  218 (372)
T ss_dssp             ---HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred             ---HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence               111110  1  2478999999998            1135789999999998653       123556789999988


Q ss_pred             EEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          283 DLQHWESDTVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                      ..+...  ......+...+...++++.|+|+++.+
T Consensus       219 s~N~i~--~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          219 AYNGAG--DTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             CSSCCC--HHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             CCCCCC--HHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            655321  111345677788889999999998864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.85  E-value=0.00014  Score=69.88  Aligned_cols=30  Identities=17%  Similarity=0.335  Sum_probs=13.7

Q ss_pred             CCeeEEEEEecccc---ceeecCCCCceEEEEE
Q 048811          254 PNLQLIRIVDNMLM---EYEVHEMQSIQQATLD  283 (318)
Q Consensus       254 P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~  283 (318)
                      ++|++|.++++...   ...++++++|+.+++.
T Consensus       518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  550 (635)
T 4g8a_A          518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  550 (635)
T ss_dssp             TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred             CCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence            44555555544322   1234445555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.83  E-value=0.0029  Score=55.98  Aligned_cols=55  Identities=20%  Similarity=0.128  Sum_probs=31.4

Q ss_pred             CCcccEEEeccc-ceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811          152 SMTLEVLRLHTA-FRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL  208 (318)
Q Consensus       152 ~~~L~~L~L~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l  208 (318)
                      |.+|+.|.| .. ..........+|++|++|+|.+..+..- -...+.+|..+..+.+
T Consensus       100 ~~~L~~l~L-~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i-~~~aF~~~~~l~~l~~  155 (329)
T 3sb4_A          100 KQTLEKVIL-SEKIKNIEDAAFKGCDNLKICQIRKKTAPNL-LPEALADSVTAIFIPL  155 (329)
T ss_dssp             CTTCCC-CB-CTTCCEECTTTTTTCTTCCEEEBCCSSCCEE-CTTSSCTTTCEEEECT
T ss_pred             cCCCcEEEC-CccccchhHHHhhcCcccceEEcCCCCcccc-chhhhcCCCceEEecC
Confidence            788888888 44 2222223455788899888876643221 1233455666665554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.80  E-value=5.3e-05  Score=61.71  Aligned_cols=62  Identities=16%  Similarity=0.134  Sum_probs=35.6

Q ss_pred             cCCcccEEEecccc-eecCC------CCcCCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecC
Q 048811          151 SSMTLEVLRLHTAF-RFADP------PDGVCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       151 ~~~~L~~L~L~~~~-~~~~~------~~~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .+++|++|+| .++ .+.+.      ......++|++|+|.++.+.+++   +...+..++.|++|+|.+|..
T Consensus        34 ~~~~L~~L~L-~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           34 NDPDLEEVNL-NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             TCTTCCEEEC-TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCCCCEEEe-cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            4566777777 555 43221      01123566777777777666654   444455666677777766655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.67  E-value=0.00028  Score=57.77  Aligned_cols=102  Identities=9%  Similarity=0.001  Sum_probs=71.2

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcC-CCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      .++++|+++......  +| .+..+++|+.|+| .++.+...|... .+++|++|+|.++.+.+  +. -+..++.|+.|
T Consensus        48 ~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l-~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           48 KACKHLALSTNNIEK--IS-SLSGMENLRILSL-GRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVL  120 (198)
T ss_dssp             TTCSEEECSEEEESC--CC-CHHHHTTCCEEEE-EEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEE
T ss_pred             CCCCEEECCCCCCcc--cc-ccccCCCCCEEEC-CCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEE
Confidence            588888887764332  55 6667789999999 777777665433 45889999999998876  33 36678999999


Q ss_pred             eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee
Q 048811          207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR  248 (318)
Q Consensus       207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~  248 (318)
                      ++.++...+.       .    ....+ -..++|+.|+++++
T Consensus       121 ~l~~N~i~~~-------~----~~~~l-~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          121 YMSNNKITNW-------G----EIDKL-AALDKLEDLLLAGN  150 (198)
T ss_dssp             EESEEECCCH-------H----HHHHH-TTTTTCSEEEECSC
T ss_pred             ECCCCcCCch-------h----HHHHH-hcCCCCCEEEecCC
Confidence            9999877311       0    00011 14678899999887

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.66  E-value=0.00064  Score=54.42  Aligned_cols=82  Identities=21%  Similarity=0.209  Sum_probs=58.4

Q ss_pred             CCceEEEEEEccCccccCCCCC-ccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          128 RNVREMEIDIIQYAPMQLPGCV-YSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      .++++|+++....  ..+|... ..+++|++|+| .++.+...+.  ...+++|++|+|.+..+... ....+..++.|+
T Consensus        28 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~  103 (177)
T 2o6r_A           28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSL-SQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLK  103 (177)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred             CCCcEEEeCCCcc--cEeCHHHhcCcccccEEEC-CCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccC
Confidence            3678888776532  2444433 46789999999 7776665543  34789999999988877643 344567889999


Q ss_pred             eeeeeeecC
Q 048811          205 ELSLTVLIQ  213 (318)
Q Consensus       205 ~L~l~~c~~  213 (318)
                      .|++.++..
T Consensus       104 ~L~l~~N~l  112 (177)
T 2o6r_A          104 ELALDTNQL  112 (177)
T ss_dssp             EEECCSSCC
T ss_pred             EEECcCCcc
Confidence            999998876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.56  E-value=0.0013  Score=63.09  Aligned_cols=78  Identities=22%  Similarity=0.172  Sum_probs=51.5

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++.|+++....  ..+|. +..+++|+.|+| .++.+...|. ...+++|++|+|.++.+.+  +. -+..++.|+.|+
T Consensus       442 ~L~~L~Ls~n~l--~~lp~-~~~l~~L~~L~L-s~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~  514 (567)
T 1dce_A          442 DVRVLHLAHKDL--TVLCH-LEQLLLVTHLDL-SHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELL  514 (567)
T ss_dssp             TCSEEECTTSCC--SSCCC-GGGGTTCCEEEC-CSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEE
T ss_pred             CceEEEecCCCC--CCCcC-ccccccCcEeec-CcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEE
Confidence            566666655432  23555 666778888888 6666655543 3367788888888777665  34 466778888888


Q ss_pred             eeeecC
Q 048811          208 LTVLIQ  213 (318)
Q Consensus       208 l~~c~~  213 (318)
                      |.++..
T Consensus       515 Ls~N~l  520 (567)
T 1dce_A          515 LCNNRL  520 (567)
T ss_dssp             CCSSCC
T ss_pred             CCCCCC
Confidence            877765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.54  E-value=0.0021  Score=52.34  Aligned_cols=82  Identities=22%  Similarity=0.156  Sum_probs=62.0

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      .++++|+++.....  .+|..+...++|+.|+| .+..+...+.  ..++++|++|+|.+..+..-. ...+.++++|+.
T Consensus        31 ~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~L-s~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~  106 (193)
T 2wfh_A           31 RDVTELYLDGNQFT--LVPKELSNYKHLTLIDL-SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRL  106 (193)
T ss_dssp             TTCCEEECCSSCCC--SCCGGGGGCTTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCE
T ss_pred             CCCCEEECCCCcCc--hhHHHhhcccCCCEEEC-CCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCE
Confidence            37888887765333  56666777899999999 7777665542  458899999999998876542 345778899999


Q ss_pred             eeeeeecC
Q 048811          206 LSLTVLIQ  213 (318)
Q Consensus       206 L~l~~c~~  213 (318)
                      |+|.++..
T Consensus       107 L~L~~N~l  114 (193)
T 2wfh_A          107 LSLHGNDI  114 (193)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCCC
Confidence            99999876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.46  E-value=0.00048  Score=68.09  Aligned_cols=108  Identities=15%  Similarity=0.102  Sum_probs=68.6

Q ss_pred             CCCCccCCcccEEEecccceecCCC-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeee
Q 048811          146 PGCVYSSMTLEVLRLHTAFRFADPP-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQ  224 (318)
Q Consensus       146 p~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~  224 (318)
                      |..+..++.|+.|+| .++.+...+ ....+++|++|+|.++.+.  .+..-+..+++|+.|+|.++... .        
T Consensus       217 ~~~~~~l~~L~~L~L-s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~--------  284 (727)
T 4b8c_D          217 KDSKYDDQLWHALDL-SNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-S--------  284 (727)
T ss_dssp             -----CCCCCCEEEC-TTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-S--------
T ss_pred             hhhhccCCCCcEEEC-CCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-c--------
Confidence            445566788999999 777766554 3447899999999988876  34455678899999999988772 1        


Q ss_pred             ccccceEEEEEEcCccceEEEeeeEEEeCCCeeEEEEEecccc--ceeecCCCCceEEEEEEEe
Q 048811          225 STTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLM--EYEVHEMQSIQQATLDLQH  286 (318)
Q Consensus       225 s~~~~~~~l~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~~~--~~~~~~~~sL~~l~l~~~~  286 (318)
                                +. ..+          ...++|++|.++++...  ...++++++|+.+.|..+.
T Consensus       285 ----------lp-~~~----------~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          285 ----------LP-AEL----------GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             ----------CC-SSG----------GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             ----------cC-hhh----------cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence                      00 001          11344555555554332  2247789999998886553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.40  E-value=0.0072  Score=48.03  Aligned_cols=59  Identities=24%  Similarity=0.125  Sum_probs=30.7

Q ss_pred             CcccEEEecccceecCC-CC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          153 MTLEVLRLHTAFRFADP-PD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~-~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ++|+.|+| .+..+... +. ...+++|++|+|.+..+..- -...+.++++|+.|+|.++..
T Consensus        30 ~~l~~L~L-~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           30 TTTQVLYL-YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             TTCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcEEEc-CCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCcc
Confidence            45666666 55444433 21 23556666666666555432 223345556666666665544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.37  E-value=0.00028  Score=69.75  Aligned_cols=102  Identities=12%  Similarity=0.110  Sum_probs=71.8

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC-cCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      ..++.|+++...  ...+|..++.+++|++|+| .++.+...|. ...+++|++|+|.++.+.  .+..-+.++++|+.|
T Consensus       224 ~~L~~L~Ls~n~--l~~l~~~~~~l~~L~~L~L-s~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          224 QLWHALDLSNLQ--IFNISANIFKYDFLTRLYL-NGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCEEECTTSC--CSCCCGGGGGCCSCSCCBC-TTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEE
T ss_pred             CCCcEEECCCCC--CCCCChhhcCCCCCCEEEe-eCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEE
Confidence            467777776543  3367878888899999999 7777665554 347899999999998877  345556788999999


Q ss_pred             eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee
Q 048811          207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR  248 (318)
Q Consensus       207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~  248 (318)
                      .|.++....-       ..      .+ -..++|+.|+++++
T Consensus       299 ~L~~N~l~~l-------p~------~~-~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          299 YFFDNMVTTL-------PW------EF-GNLCNLQFLGVEGN  326 (727)
T ss_dssp             ECCSSCCCCC-------CS------ST-TSCTTCCCEECTTS
T ss_pred             ECCCCCCCcc-------Ch------hh-hcCCCccEEeCCCC
Confidence            9998876211       00      00 13467788877775

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.29  E-value=0.0096  Score=47.54  Aligned_cols=59  Identities=17%  Similarity=0.068  Sum_probs=31.6

Q ss_pred             CcccEEEecccceecCC-CC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          153 MTLEVLRLHTAFRFADP-PD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~-~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ++|+.|+| .+..+... +. ...+++|++|+|.+..+..- -..++.++++|+.|+|.++..
T Consensus        33 ~~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           33 TDKQRLWL-NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             TTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcEEEe-CCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCcc
Confidence            56666666 55544443 21 23566666666666655432 122345566666666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.08  E-value=0.0064  Score=48.57  Aligned_cols=82  Identities=21%  Similarity=0.213  Sum_probs=61.4

Q ss_pred             CCceEEEEEEccCccccC-CCCCccCCcccEEEecccceecCCCCc--CCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          128 RNVREMEIDIIQYAPMQL-PGCVYSSMTLEVLRLHTAFRFADPPDG--VCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      .++++|+++....  ..+ |..+...++|+.|+| .+..+...|..  ..+++|++|+|.+..+..- -...+..+++|+
T Consensus        33 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L-s~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~  108 (174)
T 2r9u_A           33 TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYF-NSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLT  108 (174)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCS
T ss_pred             CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEEC-CCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCC
Confidence            4788888876532  234 445567799999999 77777666543  4799999999999887643 234577899999


Q ss_pred             eeeeeeecC
Q 048811          205 ELSLTVLIQ  213 (318)
Q Consensus       205 ~L~l~~c~~  213 (318)
                      .|.|.+..+
T Consensus       109 ~L~L~~N~~  117 (174)
T 2r9u_A          109 HIYLYNNPW  117 (174)
T ss_dssp             EEECCSSCB
T ss_pred             EEEeCCCCc
Confidence            999999876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.96  E-value=0.0079  Score=47.77  Aligned_cols=82  Identities=20%  Similarity=0.075  Sum_probs=59.8

Q ss_pred             CCceEEEEEEccCccccC-CCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          128 RNVREMEIDIIQYAPMQL-PGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      ..+++|+++...  ...+ |..+...++|+.|+| .+..+...+.  ...+++|++|+|.+..+..- -...+..+++|+
T Consensus        30 ~~l~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L-s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~  105 (170)
T 3g39_A           30 TTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLT  105 (170)
T ss_dssp             TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred             CCCcEEEcCCCc--CCccChhhhcCcccCCEEEC-CCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCC
Confidence            477888777653  2234 344556789999999 7777666543  24899999999999887643 234577899999


Q ss_pred             eeeeeeecC
Q 048811          205 ELSLTVLIQ  213 (318)
Q Consensus       205 ~L~l~~c~~  213 (318)
                      .|.|.+...
T Consensus       106 ~L~L~~N~~  114 (170)
T 3g39_A          106 HIWLLNNPW  114 (170)
T ss_dssp             EEECCSSCB
T ss_pred             EEEeCCCCC
Confidence            999998866

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=95.60  E-value=0.071  Score=47.33  Aligned_cols=128  Identities=15%  Similarity=0.127  Sum_probs=76.0

Q ss_pred             cccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCC
Q 048811          142 PMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPA  219 (318)
Q Consensus       142 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~  219 (318)
                      -.++|..+  .+++++|+| .+..+...|.  ..++++|++|+|+++.+.+.-=...+.+++.|+++.+..+.....   
T Consensus        21 Lt~iP~~l--~~~l~~L~L-s~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~---   94 (350)
T 4ay9_X           21 VTEIPSDL--PRNAIELRF-VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY---   94 (350)
T ss_dssp             CCSCCTTC--CTTCSEEEE-ESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE---
T ss_pred             CCccCcCc--CCCCCEEEc-cCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc---
Confidence            34566654  368999999 7776655543  358999999999988764321124567888888777766654211   


Q ss_pred             ceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc----ceeecCCC-CceEEEEEE
Q 048811          220 NFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM----EYEVHEMQ-SIQQATLDL  284 (318)
Q Consensus       220 ~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~----~~~~~~~~-sL~~l~l~~  284 (318)
                         |..     ..+ -..++|+.|.++++        ......++..+.+.+....    ...+..++ .++.+.+.-
T Consensus        95 ---l~~-----~~f-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           95 ---INP-----EAF-QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             ---ECT-----TSB-CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             ---cCc-----hhh-hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence               000     000 13578889988887        2234556777777664322    12233333 466665543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.45  E-value=0.0016  Score=52.79  Aligned_cols=99  Identities=13%  Similarity=0.053  Sum_probs=62.3

Q ss_pred             CCCChhHHHHHHHH--CCceEEEEEEc-cCcc---ccCCCCCccCCcccEEEecccceecCCC------CcCCCCCCcee
Q 048811          114 RRDRFPLWVSQAIM--RNVREMEIDII-QYAP---MQLPGCVYSSMTLEVLRLHTAFRFADPP------DGVCFPQLKIL  181 (318)
Q Consensus       114 ~~~~~~~wl~~a~~--~~l~~L~l~~~-~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~~~------~~~~~~~L~~L  181 (318)
                      ....+..++..+..  ..+++|+++.+ ..+.   ..+...+..+++|++|+| .++.+.+..      .....++|++|
T Consensus        20 ~~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~L-s~n~i~~~g~~~l~~~L~~n~~L~~L   98 (185)
T 1io0_A           20 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSI-VGTRSNDPVAFALAEMLKVNNTLKSL   98 (185)
T ss_dssp             CCCCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEEC-TTSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             CccHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEEC-cCCCCChHHHHHHHHHHHhCCCcCEE
Confidence            34556666766655  45777777654 3221   123333445678888888 776653310      01145788888


Q ss_pred             EeeEEEeCcch---hhhhhcCCcccceeee--eeecC
Q 048811          182 QIYITHPENRV---TEKLFCSCPSLTELSL--TVLIQ  213 (318)
Q Consensus       182 ~L~~~~~~~~~---l~~ll~~cp~Le~L~l--~~c~~  213 (318)
                      +|.++.+.+.+   +...+..++.|++|+|  .++..
T Consensus        99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i  135 (185)
T 1io0_A           99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL  135 (185)
T ss_dssp             ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence            88888888776   5555667888888888  66665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.37  E-value=0.023  Score=50.36  Aligned_cols=80  Identities=20%  Similarity=0.075  Sum_probs=39.2

Q ss_pred             CceEEEEEE-ccCccccCC-CCCccCCcccEEEecccceecCCC-C-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          129 NVREMEIDI-IQYAPMQLP-GCVYSSMTLEVLRLHTAFRFADPP-D-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       129 ~l~~L~l~~-~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      ++++|+|+. ..  ...+| ..+...++|+.|+| .+..+...+ . ...+++|++|+|.+..+..- -..++...+ |+
T Consensus        32 ~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l-~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~  106 (347)
T 2ifg_A           32 NLTELYIENQQH--LQHLELRDLRGLGELRNLTI-VKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQ  106 (347)
T ss_dssp             CCSEEECCSCSS--CCEECGGGSCSCCCCSEEEC-CSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CC
T ss_pred             CeeEEEccCCCC--CCCcChhHhccccCCCEEEC-CCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ce
Confidence            466666653 21  11223 23344566666666 444443322 2 23566666666666655432 122233333 66


Q ss_pred             eeeeeeecC
Q 048811          205 ELSLTVLIQ  213 (318)
Q Consensus       205 ~L~l~~c~~  213 (318)
                      .|.|.+...
T Consensus       107 ~l~l~~N~~  115 (347)
T 2ifg_A          107 ELVLSGNPL  115 (347)
T ss_dssp             EEECCSSCC
T ss_pred             EEEeeCCCc
Confidence            666665544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.32  E-value=0.011  Score=53.96  Aligned_cols=57  Identities=9%  Similarity=0.162  Sum_probs=27.1

Q ss_pred             cCCcccEEEecccceecCC-CCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeee
Q 048811          151 SSMTLEVLRLHTAFRFADP-PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTV  210 (318)
Q Consensus       151 ~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~  210 (318)
                      .|.+|+.++| ....+... .....+.+|+++.|... +..- -...+.+|++|+.+.+..
T Consensus       178 ~c~~L~~l~l-~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I-~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          178 YCYNLKKADL-SKTKITKLPASTFVYAGIEEVLLPVT-LKEI-GSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TCTTCCEEEC-TTSCCSEECTTTTTTCCCSEEECCTT-CCEE-CTTTTTTCTTCCCEECCT
T ss_pred             CcccCCeeec-CCCcceEechhhEeecccCEEEeCCc-hhee-hhhHhhCCCCCCEEecCC
Confidence            4556666666 33222111 12223455555555321 0000 134566788888888754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.21  E-value=0.43  Score=43.28  Aligned_cols=18  Identities=28%  Similarity=0.514  Sum_probs=11.7

Q ss_pred             hhhcCCcccceeeeeeec
Q 048811          195 KLFCSCPSLTELSLTVLI  212 (318)
Q Consensus       195 ~ll~~cp~Le~L~l~~c~  212 (318)
                      ..+.+|++|+.+.+.+..
T Consensus       265 ~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          265 RAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             TTTTTCTTCCEEEEESSC
T ss_pred             hHhhCCCCCCEEEeCCcc
Confidence            446677777777775543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=92.88  E-value=0.13  Score=45.05  Aligned_cols=35  Identities=23%  Similarity=0.257  Sum_probs=14.8

Q ss_pred             CCCCceeEeeEEEeCcchhhhhhcCCcccceeeeee
Q 048811          175 FPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTV  210 (318)
Q Consensus       175 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~  210 (318)
                      +++|++|+|.+..+..- -...+.+|++|++|.+..
T Consensus       225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~  259 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPH  259 (329)
T ss_dssp             CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCT
T ss_pred             cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCc
Confidence            44555555544322211 122344555555555433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=92.41  E-value=0.074  Score=47.01  Aligned_cols=67  Identities=18%  Similarity=0.125  Sum_probs=36.7

Q ss_pred             cCCCCCccCCcccEEEeccc-ceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          144 QLPGCVYSSMTLEVLRLHTA-FRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       144 ~lp~~~~~~~~L~~L~L~~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .+|. +....+|+.|+| .+ ..+...+  ...++++|++|+|.+..+..- ....+.++++|+.|+|.+...
T Consensus        23 ~ip~-l~~~~~L~~L~l-~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYI-ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             TTTT-SCSCSCCSEEEC-CSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCC
T ss_pred             ccCC-CCCCCCeeEEEc-cCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcc
Confidence            4555 555566666666 43 3333322  133566666666666655432 233455666666666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=92.00  E-value=0.022  Score=48.98  Aligned_cols=80  Identities=11%  Similarity=0.085  Sum_probs=48.7

Q ss_pred             CCceEEEEEEccCccc-cCCCCCccCCcccEEEecccceecCCCCcCCCC--CCceeEeeEEEeCcc-----h-hhhhhc
Q 048811          128 RNVREMEIDIIQYAPM-QLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFP--QLKILQIYITHPENR-----V-TEKLFC  198 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~-~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~~-----~-l~~ll~  198 (318)
                      ..++.|+++....... .+|..+..+++|+.|+| .+..+........+.  +|++|+|.+..+.+.     . ...++.
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~L-s~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL-SGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEEC-TTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEEC-CCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence            4677777766533221 34444456788888888 666554432222333  788888877776541     2 345677


Q ss_pred             CCcccceeee
Q 048811          199 SCPSLTELSL  208 (318)
Q Consensus       199 ~cp~Le~L~l  208 (318)
                      .+|.|+.|+=
T Consensus       249 ~~P~L~~LDg  258 (267)
T 3rw6_A          249 RFPKLLRLDG  258 (267)
T ss_dssp             HCTTCCEESS
T ss_pred             HCcccCeECC
Confidence            8888887753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=85.75  E-value=1.4  Score=39.43  Aligned_cols=55  Identities=15%  Similarity=0.135  Sum_probs=26.6

Q ss_pred             CCCeeEEEEEecc--ccceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          253 APNLQLIRIVDNM--LMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       253 ~P~L~~L~~~~~~--~~~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                      +.+|+.+.+....  .....+.++.+|+++.+....         ....-+..+.+++.+++..+.
T Consensus       333 C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~---------~~~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          333 CEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR---------SQWNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             CTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH---------HHHHTCBCCCCC---------
T ss_pred             CCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce---------eehhhhhccCCCCEEEeCCCC
Confidence            4556666663321  224567789999988774321         112345677888888877654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=85.55  E-value=0.39  Score=41.05  Aligned_cols=59  Identities=25%  Similarity=0.138  Sum_probs=30.7

Q ss_pred             CCcccEEEecccceecCCCC----cCCCCCCceeEeeEEEeCcch-hhhhhcCCcccceeeeeeecC
Q 048811          152 SMTLEVLRLHTAFRFADPPD----GVCFPQLKILQIYITHPENRV-TEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       152 ~~~L~~L~L~~~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      +++|+.|+| .+..+...+.    ...+++|+.|+|.+..+.+.. +..+ .+. .|++|.|.++..
T Consensus       169 l~~L~~L~L-s~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl  232 (267)
T 3rw6_A          169 IPELLSLNL-SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSL  232 (267)
T ss_dssp             CTTCCEEEC-TTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTT
T ss_pred             CCCCCEEEC-CCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcC
Confidence            356666666 5444433221    125666666666666665542 3332 223 666666666554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.08  E-value=0.075  Score=43.33  Aligned_cols=62  Identities=13%  Similarity=0.149  Sum_probs=42.1

Q ss_pred             CCcccEEEecccc-eecCC------CCcCCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecCC
Q 048811          152 SMTLEVLRLHTAF-RFADP------PDGVCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQP  214 (318)
Q Consensus       152 ~~~L~~L~L~~~~-~~~~~------~~~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~~  214 (318)
                      .++|++|+| .+. .+.+.      .....-..|++|+|.++.+.+.+   +...+..-..|++|+|..+...
T Consensus        40 n~~L~~L~L-~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           40 DTDLKEVNI-NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEEC-TTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCccEEEC-CCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            457888888 543 32211      01124567888888888888766   6667777788888888888773

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=80.39  E-value=0.57  Score=42.11  Aligned_cols=31  Identities=10%  Similarity=0.126  Sum_probs=16.2

Q ss_pred             CCCeeEEEEEecc--ccceeecCCCCceEEEEE
Q 048811          253 APNLQLIRIVDNM--LMEYEVHEMQSIQQATLD  283 (318)
Q Consensus       253 ~P~L~~L~~~~~~--~~~~~~~~~~sL~~l~l~  283 (318)
                      +.+|+.+.+....  .....+.++++|+++.|.
T Consensus       342 c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          342 CTSLSNINFPLSLRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             CTTCCEECCCTTCCEECTTTBTTCTTCCEEEEE
T ss_pred             CCCCCEEEECccccEehHHHhhCCCCCCEEEEC
Confidence            3455555553321  113456677777776663

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=80.11  E-value=0.18  Score=41.03  Aligned_cols=96  Identities=13%  Similarity=0.125  Sum_probs=54.5

Q ss_pred             CCChhHHHHHHHH--CCceEEEEEEc-cCc---cccCCCCCccCCcccEEEecccceecCCC-C-----cCCCCCCceeE
Q 048811          115 RDRFPLWVSQAIM--RNVREMEIDII-QYA---PMQLPGCVYSSMTLEVLRLHTAFRFADPP-D-----GVCFPQLKILQ  182 (318)
Q Consensus       115 ~~~~~~wl~~a~~--~~l~~L~l~~~-~~~---~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~-----~~~~~~L~~L~  182 (318)
                      ...++..+..+..  ..+++|.+... ..+   ...+-..+....+|+.|+| .++.+.+.- .     ...-+.|++|+
T Consensus        26 ~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L-~~n~igd~ga~alA~aL~~N~tL~~L~  104 (197)
T 1pgv_A           26 DTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSL-ANTAISDSEARGLIELIETSPSLRVLN  104 (197)
T ss_dssp             -CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEEC-TTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred             CCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEc-cCCCCChHHHHHHHHHHhcCCccCeEe
Confidence            4456666666655  34666666432 111   1112222333467888888 776654320 0     01456788888


Q ss_pred             eeEEEeCcch---hhhhhcCCcccceeeeeee
Q 048811          183 IYITHPENRV---TEKLFCSCPSLTELSLTVL  211 (318)
Q Consensus       183 L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c  211 (318)
                      |.+..+.+.+   +...+..-..|++|.|.++
T Consensus       105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            8888888776   4444555566888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	318
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	4e-06
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	5e-06
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.002
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.002

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 4e-06
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 23 DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSV---RNLCFDDGGP 72
          D IS LP  +   +L+FL  +D +  +   + WR         R  C ++G  
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGID 69

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (99), Expect = 5e-06
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 23 DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSV----RNLCFDDG 70
          D I++LP  +   I  +L  ED + +  +SQ W           + L   + 
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 55

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 0.002
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 26 SALPDSVLSNILTFLPLEDAVATSSLSQRWRHA 58
           +LPD +L  I + L L + +  S + +RW   
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 23 DRISALP----DSVLSNILTFLPLEDAVATSSLSQRWRH 57
          D I+ALP    D +  NIL++L  +   A   + + W  
Sbjct: 9  DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.14
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.06
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.81
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.78
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.54
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.46
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.4
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.35
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.29
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.15
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.09
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.01
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.98
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.9
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.81
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.76
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.71
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.51
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.35
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.27
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.26
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.12
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.08
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.96
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.5
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.07
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.01
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.82
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.58
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.24
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.05
d2ifga3	156	High affinity nerve growth factor receptor, N-term	94.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	94.66
d2ifga3	156	High affinity nerve growth factor receptor, N-term	94.25
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	88.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	81.96

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.2e-11  Score=73.69  Aligned_cols=36  Identities=28%  Similarity=0.508  Sum_probs=33.3

Q ss_pred             CCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhcC
Q 048811           25 ISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWT   60 (318)
Q Consensus        25 is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~   60 (318)
                      ++.||+|++.+||++|+.+|+++++.|||+|+++..
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999999998643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.8e-13  Score=116.41  Aligned_cols=169  Identities=18%  Similarity=0.210  Sum_probs=91.6

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCC--CCcCCCCCCceeEeeEEE-eCcchhhhhhcCCcccce
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADP--PDGVCFPQLKILQIYITH-PENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~  205 (318)
                      ++++|+++.+......++..+..|++|++|+| .+|.+.+.  .....+++|++|+|.+|. +++..+..++.+||+|++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L-~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL-EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEEC-TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccc-cccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            56777665543222233334456777788877 76654321  112356778888877764 444447777777788888


Q ss_pred             eeeeeecCCCCCCCceeeeccccceE-EEEEEcCccceEEEeee-----------EEEeCCCeeEEEEEecccc----ce
Q 048811          206 LSLTVLIQPDDPPANFIIQSTTLNTL-TFVVLFASLRGMSYHHR-----------AVIMAPNLQLIRIVDNMLM----EY  269 (318)
Q Consensus       206 L~l~~c~~~~~~~~~~~i~s~~~~~~-~l~i~~~~L~~L~i~~~-----------~~i~~P~L~~L~~~~~~~~----~~  269 (318)
                      |++.+|....+.           ... .+.-.+++|+.|.+++|           +.-.+|+|++|++.++...    ..
T Consensus       126 L~ls~c~~~~~~-----------~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~  194 (284)
T d2astb2         126 LNLSWCFDFTEK-----------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  194 (284)
T ss_dssp             EECCCCTTCCHH-----------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             cccccccccccc-----------cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh
Confidence            888777653220           000 01112456777776665           2234567777777665321    22


Q ss_pred             eecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeec
Q 048811          270 EVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSG  314 (318)
Q Consensus       270 ~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~  314 (318)
                      .+.+++.|+++.+..+..-.    ...+ .-+..+++++.|++.+
T Consensus       195 ~l~~~~~L~~L~L~~C~~i~----~~~l-~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         195 EFFQLNYLQHLSLSRCYDII----PETL-LELGEIPTLKTLQVFG  234 (284)
T ss_dssp             GGGGCTTCCEEECTTCTTCC----GGGG-GGGGGCTTCCEEECTT
T ss_pred             hhcccCcCCEEECCCCCCCC----hHHH-HHHhcCCCCCEEeeeC
Confidence            45566677776665432111    1122 2245566777776654

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.1e-09  Score=79.22  Aligned_cols=38  Identities=29%  Similarity=0.484  Sum_probs=36.1

Q ss_pred             CCccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhh
Q 048811           21 PEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHA   58 (318)
Q Consensus        21 ~~d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~l   58 (318)
                      ..|.|+.||+||+.+||++|+++|+++++.|||+|+.+
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999999999999975

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=4.6e-10  Score=80.89  Aligned_cols=40  Identities=28%  Similarity=0.529  Sum_probs=36.5

Q ss_pred             CccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhcCc
Q 048811           22 EDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTS   61 (318)
Q Consensus        22 ~d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~~   61 (318)
                      .|.|+.||+||+.+||++|+.+|+++++.|||+|+++...
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            5889999999999999999999999999999999975443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.5e-09  Score=90.91  Aligned_cols=174  Identities=9%  Similarity=-0.021  Sum_probs=113.1

Q ss_pred             HHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCC---CCcCCCCCCceeEeeEEEeCcchhhhhhc
Q 048811          122 VSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADP---PDGVCFPQLKILQIYITHPENRVTEKLFC  198 (318)
Q Consensus       122 l~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~ll~  198 (318)
                      +.....+++..+.+....  ........+...+|++|+| .+|.+...   .....+++|++|+|.++.+.+..+.. +.
T Consensus        17 l~~l~~~~~~~lrl~~~~--~~~~~~~~~~~~~L~~LdL-s~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~   92 (284)
T d2astb2          17 TGRLLSQGVIAFRCPRSF--MDQPLAEHFSPFRVQHMDL-SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LA   92 (284)
T ss_dssp             HHHHHHTTCSEEECTTCE--ECSCCCSCCCCBCCCEEEC-TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HT
T ss_pred             HHHHHhccceEeeccccc--cccchhhhccCCCCCEEEC-CCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-Hh
Confidence            444445566665543221  1111122334568999999 77765432   12347999999999999887665555 46


Q ss_pred             CCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee-----------EEEeCCCeeEEEEEecccc
Q 048811          199 SCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR-----------AVIMAPNLQLIRIVDNMLM  267 (318)
Q Consensus       199 ~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~-----------~~i~~P~L~~L~~~~~~~~  267 (318)
                      .||+|++|++.+|...++.           ....+.-.+++|++|++++|           +....|+|+.|.+.|+...
T Consensus        93 ~~~~L~~L~Ls~c~~itd~-----------~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (284)
T d2astb2          93 KNSNLVRLNLSGCSGFSEF-----------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN  161 (284)
T ss_dssp             TCTTCSEEECTTCBSCCHH-----------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             cCCCCcCcccccccccccc-----------ccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc
Confidence            7999999999999874330           11112124689999999998           2223689999999986421


Q ss_pred             ------ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecC
Q 048811          268 ------EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGG  315 (318)
Q Consensus       268 ------~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~  315 (318)
                            .....++|+|+++.+..+....    . .....+..+++++.|.|+..
T Consensus       162 i~~~~l~~l~~~~~~L~~L~L~~~~~it----d-~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         162 LQKSDLSTLVRRCPNLVHLDLSDSVMLK----N-DCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCC----G-GGGGGGGGCTTCCEEECTTC
T ss_pred             cccccccccccccccccccccccccCCC----c-hhhhhhcccCcCCEEECCCC
Confidence                  2234578999999886442211    1 22344567899999999874

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.8e-08  Score=74.54  Aligned_cols=38  Identities=32%  Similarity=0.586  Sum_probs=34.7

Q ss_pred             CCccCCCCC----hHHHHHHhhcCChhhHhhhhhcchhhHhh
Q 048811           21 PEDRISALP----DSVLSNILTFLPLEDAVATSSLSQRWRHA   58 (318)
Q Consensus        21 ~~d~is~LP----d~vL~~Ils~L~~~d~~~ts~vskrWr~l   58 (318)
                      ..|.|+.||    |||+.+|||||+.+|+++++.|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            358899999    59999999999999999999999999864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.40  E-value=2.8e-08  Score=81.18  Aligned_cols=156  Identities=13%  Similarity=0.114  Sum_probs=104.9

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL  208 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l  208 (318)
                      .+++|+++.+...  .++ .+..+++|++|+| .++.+...+....+++|+.|++.++.+.+  +.. +..+|.|+.|.+
T Consensus        47 ~L~~L~l~~~~i~--~l~-~l~~l~~L~~L~L-~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l  119 (210)
T d1h6ta2          47 SIDQIIANNSDIK--SVQ-GIQYLPNVTKLFL-NGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSL  119 (210)
T ss_dssp             TCCEEECTTSCCC--CCT-TGGGCTTCCEEEC-CSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEEC
T ss_pred             CccEEECcCCCCC--Cch-hHhhCCCCCEEeC-CCccccCccccccCccccccccccccccc--ccc-cccccccccccc
Confidence            6777776654322  222 2456788999999 77777666555678899999998887764  333 667899999999


Q ss_pred             eeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEeccccc-eeecCCCCceEEE
Q 048811          209 TVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLME-YEVHEMQSIQQAT  281 (318)
Q Consensus       209 ~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~~-~~~~~~~sL~~l~  281 (318)
                      .+|...+-              ..+ ...+.|+.+.++++      .....++|+++.+.++.... ..+.++++|++++
T Consensus       120 ~~~~~~~~--------------~~l-~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~  184 (210)
T d1h6ta2         120 EHNGISDI--------------NGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY  184 (210)
T ss_dssp             TTSCCCCC--------------GGG-GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             cccccccc--------------ccc-cccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEE
Confidence            88876211              000 13356677766665      22346789999998876542 2467899999998


Q ss_pred             EEEEeccCCCCChhhHHHHhcCCCceeEEEeec
Q 048811          282 LDLQHWESDTVDPQRARNLIEGVATTACLILSG  314 (318)
Q Consensus       282 l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~  314 (318)
                      +..+...       .+ .-+.++++++.|+|++
T Consensus       185 Ls~N~i~-------~l-~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         185 LSKNHIS-------DL-RALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCC-------BC-GGGTTCTTCSEEEEEE
T ss_pred             CCCCCCC-------CC-hhhcCCCCCCEEEccC
Confidence            8654321       11 2478899999999975

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.35  E-value=3.6e-08  Score=79.78  Aligned_cols=153  Identities=11%  Similarity=0.102  Sum_probs=98.3

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|.++.....  .++ .+..+++|++|+| .++.+...+...++++|++|++.++.+..-  .. +.+++.|+.|.
T Consensus        40 ~~l~~L~l~~~~i~--~l~-~l~~l~nL~~L~L-s~N~l~~~~~l~~l~~L~~L~l~~n~~~~~--~~-l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGIK--SID-GVEYLNNLTQINF-SNNQLTDITPLKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCCC--CCT-TGGGCTTCCEEEC-CSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEE
T ss_pred             cCCCEEECCCCCCC--Ccc-ccccCCCcCcCcc-ccccccCcccccCCcccccccccccccccc--cc-ccccccccccc
Confidence            47777776655322  222 2445788999999 777776665566888899998888766543  22 56888899998


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc-ceeecCCCCceEE
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQA  280 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l  280 (318)
                      +.+|.....              ..+ -..++|+.|.++++      .....++|+.|.+.++... ...++++++|+++
T Consensus       113 l~~~~~~~~--------------~~~-~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L  177 (199)
T d2omxa2         113 LFNNQITDI--------------DPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERL  177 (199)
T ss_dssp             CCSSCCCCC--------------GGG-TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred             ccccccccc--------------ccc-chhhhhHHhhhhhhhhcccccccccccccccccccccccCCccccCCCCCCEE
Confidence            888866211              000 13467777777776      1234577888888877543 2236788889888


Q ss_pred             EEEEEeccCCCCChhhHHHHhcCCCceeEE
Q 048811          281 TLDLQHWESDTVDPQRARNLIEGVATTACL  310 (318)
Q Consensus       281 ~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L  310 (318)
                      ++..+...  .     + ..+..+++++.|
T Consensus       178 ~ls~N~i~--~-----i-~~l~~L~~L~~L  199 (199)
T d2omxa2         178 DISSNKVS--D-----I-SVLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCC--C-----C-GGGGGCTTCSEE
T ss_pred             ECCCCCCC--C-----C-ccccCCCCCCcC
Confidence            87654311  1     1 235677777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.29  E-value=8.9e-08  Score=77.34  Aligned_cols=139  Identities=11%  Similarity=0.119  Sum_probs=103.0

Q ss_pred             CCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceE
Q 048811          152 SMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTL  231 (318)
Q Consensus       152 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~  231 (318)
                      .+++++|++ .++.+...++...|++|++|+|+++.+.+-  .. +.++|+|+.|.+.++.....              .
T Consensus        39 l~~l~~L~l-~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~~~--------------~  100 (199)
T d2omxa2          39 LDQVTTLQA-DRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADI--------------T  100 (199)
T ss_dssp             HTTCCEEEC-TTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCC--------------G
T ss_pred             hcCCCEEEC-CCCCCCCccccccCCCcCcCccccccccCc--cc-ccCCcccccccccccccccc--------------c
Confidence            468999999 888877766666899999999999987653  23 78999999999999876311              1


Q ss_pred             EEEEEcCccceEEEeee------EEEeCCCeeEEEEEeccccc-eeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCC
Q 048811          232 TFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLME-YEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGV  304 (318)
Q Consensus       232 ~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~~-~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l  304 (318)
                      .+. ..++|+.|.++++      .....|+|+.|.++++.... ..+..+++|+++.+.-+...  .  .    .-+.++
T Consensus       101 ~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~--~--l----~~l~~l  171 (199)
T d2omxa2         101 PLA-NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVT--D--L----KPLANL  171 (199)
T ss_dssp             GGT-TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC--C--C----GGGTTC
T ss_pred             ccc-cccccccccccccccccccccchhhhhHHhhhhhhhhccccccccccccccccccccccc--C--C----ccccCC
Confidence            111 4578999999887      22356899999998876542 24678899999887654211  1  1    126889


Q ss_pred             CceeEEEeecCcC
Q 048811          305 ATTACLILSGGVL  317 (318)
Q Consensus       305 ~~v~~L~l~~~~~  317 (318)
                      ++++.|+++++.+
T Consensus       172 ~~L~~L~ls~N~i  184 (199)
T d2omxa2         172 TTLERLDISSNKV  184 (199)
T ss_dssp             TTCCEEECCSSCC
T ss_pred             CCCCEEECCCCCC
Confidence            9999999998753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.15  E-value=2.2e-07  Score=76.37  Aligned_cols=171  Identities=11%  Similarity=0.082  Sum_probs=96.6

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|.+..+...  .++ .+..+++|+.|+| .++.+...+....+++|+.+.+.++.+.+  +.. +.+++.|+.|.
T Consensus        41 ~~L~~L~l~~~~i~--~l~-~l~~l~~L~~L~l-s~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l~  113 (227)
T d1h6ua2          41 DGITTLSAFGTGVT--TIE-GVQYLNNLIGLEL-KDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLD  113 (227)
T ss_dssp             HTCCEEECTTSCCC--CCT-TGGGCTTCCEEEC-CSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEE
T ss_pred             CCcCEEECCCCCCC--cch-hHhcCCCCcEeec-CCceeeccccccccccccccccccccccc--ccc-ccccccccccc
Confidence            36777776655322  232 3556788888888 77766655555678888888887776554  222 45778888888


Q ss_pred             eeeecCCCCC-------CCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc-ceeecC
Q 048811          208 LTVLIQPDDP-------PANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM-EYEVHE  273 (318)
Q Consensus       208 l~~c~~~~~~-------~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~-~~~~~~  273 (318)
                      +.+|...+..       ...+.+.........--...++|+.|.+.++      ..-..|+|++|+++++... ...+++
T Consensus       114 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~  193 (227)
T d1h6ua2         114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS  193 (227)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             cccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChhhcC
Confidence            8777652110       0011111100000000013456777777766      1124577888887776543 223567


Q ss_pred             CCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEee
Q 048811          274 MQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILS  313 (318)
Q Consensus       274 ~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~  313 (318)
                      +++|+++++.-+...  .     + .-+..+++++.|.|+
T Consensus       194 l~~L~~L~Ls~N~lt--~-----i-~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         194 LPNLIEVHLKNNQIS--D-----V-SPLANTSNLFIVTLT  225 (227)
T ss_dssp             CTTCCEEECTTSCCC--B-----C-GGGTTCTTCCEEEEE
T ss_pred             CCCCCEEECcCCcCC--C-----C-cccccCCCCCEEEee
Confidence            788887776544211  1     1 126777888888775

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.09  E-value=3.8e-07  Score=74.18  Aligned_cols=139  Identities=12%  Similarity=0.129  Sum_probs=101.1

Q ss_pred             CCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceE
Q 048811          152 SMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTL  231 (318)
Q Consensus       152 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~  231 (318)
                      ..+|+.|.+ .++.+...++...|++|++|+|.++.+.+-  .. +..+++|+.|.+.++...+              ..
T Consensus        45 L~~L~~L~l-~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l--~~-~~~l~~L~~L~l~~n~i~~--------------l~  106 (210)
T d1h6ta2          45 LNSIDQIIA-NNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKD--------------LS  106 (210)
T ss_dssp             HHTCCEEEC-TTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC--------------GG
T ss_pred             hcCccEEEC-cCCCCCCchhHhhCCCCCEEeCCCccccCc--cc-cccCccccccccccccccc--------------cc
Confidence            358899999 888877776666899999999999988763  33 4689999999999987621              11


Q ss_pred             EEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc-ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCC
Q 048811          232 TFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGV  304 (318)
Q Consensus       232 ~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l  304 (318)
                      .+ -..++|+.|.+.++      .....|+++.+.+.++... ...+..+++|+.+.+..+...  .  .    .-+..+
T Consensus       107 ~l-~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~--~--i----~~l~~l  177 (210)
T d1h6ta2         107 SL-KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS--D--I----VPLAGL  177 (210)
T ss_dssp             GG-TTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC--C--C----GGGTTC
T ss_pred             cc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--c--c----ccccCC
Confidence            11 13578999998887      2335678999988776543 234567899999888654321  1  1    127789


Q ss_pred             CceeEEEeecCcC
Q 048811          305 ATTACLILSGGVL  317 (318)
Q Consensus       305 ~~v~~L~l~~~~~  317 (318)
                      ++++.|.++++.+
T Consensus       178 ~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         178 TKLQNLYLSKNHI  190 (210)
T ss_dssp             TTCCEEECCSSCC
T ss_pred             CCCCEEECCCCCC
Confidence            9999999998754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=9.2e-08  Score=80.85  Aligned_cols=81  Identities=14%  Similarity=0.087  Sum_probs=55.0

Q ss_pred             CCceEEEEEEccCccccCCCC-CccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811          128 RNVREMEIDIIQYAPMQLPGC-VYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL  206 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  206 (318)
                      +++++|+++...  ...+|.. +...++|++|+| .++.+...+....+++|++|+|.++.+...  ...+.+.|.|+.|
T Consensus        31 ~~l~~L~Ls~N~--i~~l~~~~f~~l~~L~~L~L-~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L  105 (266)
T d1p9ag_          31 KDTTILHLSENL--LYTFSLATLMPYTRLTQLNL-DRAELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVL  105 (266)
T ss_dssp             TTCCEEECTTSC--CSEEEGGGGTTCTTCCEEEC-TTSCCCEEECCSCCTTCCEEECCSSCCSSC--CCCTTTCTTCCEE
T ss_pred             cCCCEEECcCCc--CCCcCHHHhhcccccccccc-cccccccccccccccccccccccccccccc--ccccccccccccc
Confidence            467777776542  2234433 345678888888 776665555556788888888888776543  3456678888888


Q ss_pred             eeeeecC
Q 048811          207 SLTVLIQ  213 (318)
Q Consensus       207 ~l~~c~~  213 (318)
                      .+.++..
T Consensus       106 ~l~~~~~  112 (266)
T d1p9ag_         106 DVSFNRL  112 (266)
T ss_dssp             ECCSSCC
T ss_pred             ccccccc
Confidence            8887765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=3.7e-07  Score=76.99  Aligned_cols=67  Identities=15%  Similarity=0.072  Sum_probs=49.1

Q ss_pred             ccccCCCCCccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          141 APMQLPGCVYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       141 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .-..+|..+.  ++|++|+| .+..+...+  ...++++|++|+|.++.+..-  . .+...|.|+.|++.++..
T Consensus        21 ~L~~iP~~lp--~~l~~L~L-s~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l--~-~~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          21 NLTALPPDLP--KDTTILHL-SENLLYTFSLATLMPYTRLTQLNLDRAELTKL--Q-VDGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             CCSSCCSCCC--TTCCEEEC-TTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--E-CCSCCTTCCEEECCSSCC
T ss_pred             CCCeeCcCcC--cCCCEEEC-cCCcCCCcCHHHhhcccccccccccccccccc--c-cccccccccccccccccc
Confidence            3345676543  58999999 776655443  235899999999999887642  2 246789999999999876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.97  E-value=5.7e-08  Score=78.59  Aligned_cols=66  Identities=15%  Similarity=0.089  Sum_probs=43.7

Q ss_pred             CCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          145 LPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       145 lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ++..+...++|++|+| .++.+...+...++++|++|+|.++.+.+  +..+...+|.|+.|.+.++..
T Consensus        40 l~~sl~~L~~L~~L~L-s~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i  105 (198)
T d1m9la_          40 MDATLSTLKACKHLAL-STNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI  105 (198)
T ss_dssp             CHHHHHHTTTCCEEEC-SEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEEC
T ss_pred             hhhHHhcccccceeEC-cccCCCCcccccCCccccChhhccccccc--ccccccccccccccccccccc
Confidence            3344455677778888 66666665555567778888888777754  334445567788888877765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.93  E-value=2.1e-06  Score=73.73  Aligned_cols=84  Identities=13%  Similarity=0.012  Sum_probs=47.5

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      ..+++|+++.+..-.-.+|..+..+++|++|+| .++.+...+  ....+++|+.+++.+..+... +..-+..++.|+.
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~L-s~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~~  153 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI-THTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG  153 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEE-EEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred             ccccccccccccccccccccccccccccchhhh-ccccccccccccccchhhhccccccccccccc-CchhhccCcccce
Confidence            466666666432222246666666667777777 554433221  233566666666665554322 3344667788888


Q ss_pred             eeeeeecC
Q 048811          206 LSLTVLIQ  213 (318)
Q Consensus       206 L~l~~c~~  213 (318)
                      +.+.++..
T Consensus       154 l~l~~n~l  161 (313)
T d1ogqa_         154 ITFDGNRI  161 (313)
T ss_dssp             EECCSSCC
T ss_pred             eecccccc
Confidence            88777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.90  E-value=8.2e-07  Score=78.16  Aligned_cols=171  Identities=15%  Similarity=0.117  Sum_probs=101.7

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      ...+.+.++.....  .++. ...+++|+.|++ .++.+...+....+++|+.|++.++.+.+-  .. +..+|.|++|.
T Consensus       197 ~~~~~l~l~~n~i~--~~~~-~~~~~~L~~L~l-~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-~~~~~~L~~L~  269 (384)
T d2omza2         197 TNLESLIATNNQIS--DITP-LGILTNLDELSL-NGNQLKDIGTLASLTNLTDLDLANNQISNL--AP-LSGLTKLTELK  269 (384)
T ss_dssp             TTCSEEECCSSCCC--CCGG-GGGCTTCCEEEC-CSSCCCCCGGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEE
T ss_pred             cccceeeccCCccC--CCCc-ccccCCCCEEEC-CCCCCCCcchhhcccccchhccccCccCCC--Cc-ccccccCCEee
Confidence            35666665543211  1211 234567888888 777766665556778888888877766543  22 56778888888


Q ss_pred             eeeecCCCCCC-------CceeeeccccceEEEE--EEcCccceEEEeee------EEEeCCCeeEEEEEecccc-ceee
Q 048811          208 LTVLIQPDDPP-------ANFIIQSTTLNTLTFV--VLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM-EYEV  271 (318)
Q Consensus       208 l~~c~~~~~~~-------~~~~i~s~~~~~~~l~--i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~-~~~~  271 (318)
                      +.++......+       ..+.+....+  ..+.  ...++++.|+++++      ..-..|+|++|.+.++... ...+
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l--~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l  347 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSL  347 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCC--SCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred             ccCcccCCCCcccccccccccccccccc--ccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhH
Confidence            87765421100       0011111000  0010  13467777877776      1246788999999888654 2247


Q ss_pred             cCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecC
Q 048811          272 HEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGG  315 (318)
Q Consensus       272 ~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~  315 (318)
                      +++++|+.+++..+...       .+.. +.++++++.|+|+.+
T Consensus       348 ~~l~~L~~L~l~~N~l~-------~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         348 ANLTNINWLSAGHNQIS-------DLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGCTTCCEEECCSSCCC-------BCGG-GTTCTTCSEEECCCE
T ss_pred             cCCCCCCEEECCCCcCC-------CChh-hccCCCCCEeeCCCC
Confidence            78999999988655321       1111 678899999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.81  E-value=2.4e-06  Score=69.96  Aligned_cols=153  Identities=10%  Similarity=0.036  Sum_probs=97.9

Q ss_pred             cCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCC----C---Cceee
Q 048811          151 SSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDP----P---ANFII  223 (318)
Q Consensus       151 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~----~---~~~~i  223 (318)
                      .+.+|+.|++ .++.+...++...+++|++|+|.++.+.+..  . +..|+.|+.|.+.++...+-.    .   ..+.+
T Consensus        39 ~l~~L~~L~l-~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          39 DLDGITTLSA-FGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHTCCEEEC-TTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred             HcCCcCEEEC-CCCCCCcchhHhcCCCCcEeecCCceeeccc--c-cccccccccccccccccccccccccccccccccc
Confidence            3578999999 9998877766679999999999998876532  2 688999999999988663210    0   00011


Q ss_pred             eccccceEEEE--EEcCccceEEEeee------EEEeCCCeeEEEEEecccc-ceeecCCCCceEEEEEEEeccCCCCCh
Q 048811          224 QSTTLNTLTFV--VLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQATLDLQHWESDTVDP  294 (318)
Q Consensus       224 ~s~~~~~~~l~--i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l~l~~~~~~~~~~~~  294 (318)
                      +....  ..+.  ...+.++.+.+..+      .....++|++|.+.++... ...++++++|+++++.-+...  .   
T Consensus       115 ~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~--~---  187 (227)
T d1h6ua2         115 TSTQI--TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS--D---  187 (227)
T ss_dssp             TTSCC--CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--C---
T ss_pred             ccccc--cccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccC--C---
Confidence            11000  0000  01233444444443      2346677888888877643 334678899999888554211  1   


Q ss_pred             hhHHHHhcCCCceeEEEeecCcC
Q 048811          295 QRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       295 ~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                         ...+..+++++.|.|+++.+
T Consensus       188 ---l~~l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         188 ---ISPLASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             ---CGGGGGCTTCCEEECTTSCC
T ss_pred             ---ChhhcCCCCCCEEECcCCcC
Confidence               12367889999999988754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.5e-06  Score=67.65  Aligned_cols=59  Identities=10%  Similarity=0.052  Sum_probs=45.9

Q ss_pred             cCCcccEEEecccceecCCCCc-CCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          151 SSMTLEVLRLHTAFRFADPPDG-VCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       151 ~~~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .+.+|+.|+| .++.+...+.. ..+++|+.|+|++..+.+  +.. +.++|+|+.|.+.+|..
T Consensus        16 n~~~lr~L~L-~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~N~i   75 (162)
T d1a9na_          16 NAVRDRELDL-RGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNNNRI   75 (162)
T ss_dssp             CTTSCEEEEC-TTSCCCSCCCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCSSCC
T ss_pred             CcCcCcEEEC-CCCCCCccCccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhcccccc
Confidence            4567899999 88877666543 468899999999988764  322 57889999999999987

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.5e-06  Score=67.65  Aligned_cols=81  Identities=17%  Similarity=0.048  Sum_probs=58.3

Q ss_pred             CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811          129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL  208 (318)
Q Consensus       129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l  208 (318)
                      .+++|+++...  ...++.....+++|+.|+| .+..+...+....+++|++|+|.++.+..-. ..++.++|.|+.|.+
T Consensus        19 ~lr~L~L~~n~--I~~i~~~~~~l~~L~~L~L-s~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGYK--IPVIENLGATLDQFDAIDF-SDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTSC--CCSCCCGGGGTTCCSEEEC-CSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEEC
T ss_pred             cCcEEECCCCC--CCccCccccccccCCEEEC-CCCCCCccCCcccCcchhhhhcccccccCCC-cccccccccccccee
Confidence            46677666543  2334544455788999999 7776665565668899999999999876532 345667999999999


Q ss_pred             eeecC
Q 048811          209 TVLIQ  213 (318)
Q Consensus       209 ~~c~~  213 (318)
                      .++..
T Consensus        95 ~~N~i   99 (162)
T d1a9na_          95 TNNSL   99 (162)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            99876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.61  E-value=5.8e-06  Score=72.53  Aligned_cols=157  Identities=13%  Similarity=0.127  Sum_probs=96.1

Q ss_pred             CCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCC-------C
Q 048811          147 GCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPP-------A  219 (318)
Q Consensus       147 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~-------~  219 (318)
                      .....+++++.|.+ .++.+...+....+++|++|++.++.+.+-.   .+..++.|+.|.+.++...+-+.       .
T Consensus       191 ~~~~~l~~~~~l~l-~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~  266 (384)
T d2omza2         191 SVLAKLTNLESLIA-TNNQISDITPLGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNLAPLSGLTKLT  266 (384)
T ss_dssp             GGGGGCTTCSEEEC-CSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGGGTTCTTCS
T ss_pred             cccccccccceeec-cCCccCCCCcccccCCCCEEECCCCCCCCcc---hhhcccccchhccccCccCCCCcccccccCC
Confidence            34455688999999 7776666555567899999999999876642   35689999999999987632100       0


Q ss_pred             ceeeeccccceEEE-E-EEcCccceEEEeee------EEEeCCCeeEEEEEeccccc-eeecCCCCceEEEEEEEeccCC
Q 048811          220 NFIIQSTTLNTLTF-V-VLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLME-YEVHEMQSIQQATLDLQHWESD  290 (318)
Q Consensus       220 ~~~i~s~~~~~~~l-~-i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~~-~~~~~~~sL~~l~l~~~~~~~~  290 (318)
                      .+.++...+.  .+ . ...+.++.+.+.++      .....++++.|.++++.... ..+..+|+|+++.+.-+...  
T Consensus       267 ~L~l~~~~l~--~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~--  342 (384)
T d2omza2         267 ELKLGANQIS--NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS--  342 (384)
T ss_dssp             EEECCSSCCC--CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCC--
T ss_pred             EeeccCcccC--CCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCC--
Confidence            0111100000  00 0 01122333333333      13345678888887765442 23678999999888655321  


Q ss_pred             CCChhhHHHHhcCCCceeEEEeecCcC
Q 048811          291 TVDPQRARNLIEGVATTACLILSGGVL  317 (318)
Q Consensus       291 ~~~~~~~~~~l~~l~~v~~L~l~~~~~  317 (318)
                           .+ ..+..+++++.|+++++.+
T Consensus       343 -----~l-~~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         343 -----DV-SSLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             -----CC-GGGGGCTTCCEEECCSSCC
T ss_pred             -----CC-hhHcCCCCCCEEECCCCcC
Confidence                 11 2367899999999988754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.56  E-value=2.6e-05  Score=57.44  Aligned_cols=61  Identities=23%  Similarity=0.183  Sum_probs=30.6

Q ss_pred             CccCCcccEEEecccceecCCCC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          149 VYSSMTLEVLRLHTAFRFADPPD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       149 ~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      +..+++|++|++ .+..+...|. ...+++|++|++.+..+.+-  .. +..+|.|++|.+.++..
T Consensus        16 l~~l~~L~~L~l-s~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l--~~-~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3          16 LEQLLLVTHLDL-SHNRLRALPPALAALRCLEVLQASDNALENV--DG-VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             GGGGTTCCEEEC-CSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCC
T ss_pred             cccCCCCCEEEC-CCCccCcchhhhhhhhccccccccccccccc--Cc-cccccccCeEECCCCcc
Confidence            344455666666 4444444432 23455556665555555432  22 34555555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=3e-05  Score=57.10  Aligned_cols=82  Identities=20%  Similarity=0.226  Sum_probs=66.7

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcch-hhhhhcCCccccee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRV-TEKLFCSCPSLTEL  206 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L  206 (318)
                      ..+++|+++...  -..+|..+..+++|+.|++ .+..+...+....+++|++|++.+..+.+-. +. -+..||+|+.|
T Consensus        20 ~~L~~L~ls~N~--l~~lp~~~~~l~~L~~L~l-~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~~~~-~l~~~~~L~~L   95 (124)
T d1dcea3          20 LLVTHLDLSHNR--LRALPPALAALRCLEVLQA-SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLL   95 (124)
T ss_dssp             TTCCEEECCSSC--CCCCCGGGGGCTTCCEEEC-CSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEE
T ss_pred             CCCCEEECCCCc--cCcchhhhhhhhccccccc-ccccccccCccccccccCeEECCCCccCCCCCch-hhcCCCCCCEE
Confidence            478999887753  3457777788899999999 8888877777779999999999999987654 43 36789999999


Q ss_pred             eeeeecC
Q 048811          207 SLTVLIQ  213 (318)
Q Consensus       207 ~l~~c~~  213 (318)
                      ++.+...
T Consensus        96 ~l~~N~i  102 (124)
T d1dcea3          96 NLQGNSL  102 (124)
T ss_dssp             ECTTSGG
T ss_pred             ECCCCcC
Confidence            9988655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.35  E-value=1.4e-06  Score=70.14  Aligned_cols=121  Identities=11%  Similarity=0.096  Sum_probs=81.8

Q ss_pred             CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee-----
Q 048811          174 CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR-----  248 (318)
Q Consensus       174 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~-----  248 (318)
                      .+++|++|+|+++.+.+-  .. +.++++|+.|++.+|...+              ...+.-..++|+.|.++++     
T Consensus        46 ~L~~L~~L~Ls~n~I~~i--~~-l~~l~~L~~L~Ls~N~i~~--------------i~~~~~~~~~L~~L~l~~N~i~~l  108 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKI--SS-LSGMENLRILSLGRNLIKK--------------IENLDAVADTLEELWISYNQIASL  108 (198)
T ss_dssp             HTTTCCEEECSEEEESCC--CC-HHHHTTCCEEECCEEEECS--------------CSSHHHHHHHCCEEECSEEECCCH
T ss_pred             cccccceeECcccCCCCc--cc-ccCCccccChhhccccccc--------------cccccccccccccccccccccccc
Confidence            689999999999998763  33 6789999999999997631              1111112357888988887     


Q ss_pred             -EEEeCCCeeEEEEEeccccc----eeecCCCCceEEEEEEEeccC---CCCChhh-HHHHhcCCCceeEEE
Q 048811          249 -AVIMAPNLQLIRIVDNMLME----YEVHEMQSIQQATLDLQHWES---DTVDPQR-ARNLIEGVATTACLI  311 (318)
Q Consensus       249 -~~i~~P~L~~L~~~~~~~~~----~~~~~~~sL~~l~l~~~~~~~---~~~~~~~-~~~~l~~l~~v~~L~  311 (318)
                       .....++|++|.++++....    ..+..+|+|+.+.+..+....   ....... -..++..+++++.|+
T Consensus       109 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence             12245789999998876531    246789999999997553211   1111111 133477889999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=1.3e-05  Score=67.72  Aligned_cols=123  Identities=14%  Similarity=0.066  Sum_probs=72.8

Q ss_pred             CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee-----
Q 048811          174 CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR-----  248 (318)
Q Consensus       174 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~-----  248 (318)
                      ++++|++|+|.++.+... ....+..++.|+.+.+.+.....-       ..     ..+ -..++|+.|++.++     
T Consensus       103 ~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~l~l~~N~l~~i-------~~-----~~f-~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_         103 GLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQAL-------PD-----DTF-RDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             TCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCC-------CT-----TTT-TTCTTCCEEECCSSCCCEE
T ss_pred             ccccCCEEecCCcccccc-cccccchhcccchhhhcccccccc-------Ch-----hHh-ccccchhhcccccCccccc
Confidence            556666666666554322 123344566666666666554210       00     000 02356778877776     


Q ss_pred             ---EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811          249 ---AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV  316 (318)
Q Consensus       249 ---~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~  316 (318)
                         .....++|+++.+.++...   ...+..+++|+.+.+.-+....      .....+..+++++.|.|+++.
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~------~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA------LPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC------CCHHHHTTCTTCCEEECCSSC
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccc------ccccccccccccCEEEecCCC
Confidence               1234677888888776543   3457788899988776543211      113567889999999998864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.26  E-value=7e-05  Score=63.57  Aligned_cols=74  Identities=11%  Similarity=0.148  Sum_probs=45.3

Q ss_pred             CccceEEEeee-----EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeE
Q 048811          238 ASLRGMSYHHR-----AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTAC  309 (318)
Q Consensus       238 ~~L~~L~i~~~-----~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~  309 (318)
                      ++|+.+.+.++     -....++|+.|.+.++...   ...+.+++.++.+.+..+....      .....+.++++++.
T Consensus       150 ~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~------~~~~~~~~l~~L~~  223 (305)
T d1xkua_         150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA------VDNGSLANTPHLRE  223 (305)
T ss_dssp             TTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE------ECTTTGGGSTTCCE
T ss_pred             cccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccc------ccccccccccccee
Confidence            45666666665     1123567888877765433   2345677778877665332111      11346678899999


Q ss_pred             EEeecCcC
Q 048811          310 LILSGGVL  317 (318)
Q Consensus       310 L~l~~~~~  317 (318)
                      |+|+++.+
T Consensus       224 L~L~~N~L  231 (305)
T d1xkua_         224 LHLNNNKL  231 (305)
T ss_dssp             EECCSSCC
T ss_pred             eecccccc
Confidence            99998754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00047  Score=57.65  Aligned_cols=125  Identities=17%  Similarity=0.093  Sum_probs=82.6

Q ss_pred             CCccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeec
Q 048811          148 CVYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQS  225 (318)
Q Consensus       148 ~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s  225 (318)
                      .+..+++|++|+| .++.....+  ....+++|+.+++.+..+..- -...+..++.|++|++.++....-       ..
T Consensus       100 ~~~~l~~L~~L~l-~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i-~~~~f~~~~~L~~L~l~~N~l~~l-------~~  170 (284)
T d1ozna_         100 TFHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSV-------PE  170 (284)
T ss_dssp             TTTTCTTCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCEE-------CT
T ss_pred             hhcccccCCEEec-CCcccccccccccchhcccchhhhcccccccc-ChhHhccccchhhcccccCccccc-------ch
Confidence            3445688899988 666554432  334677888888888776543 234577888899998888876210       00


Q ss_pred             cccceEEEEEEcCccceEEEeee--EE------EeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEec
Q 048811          226 TTLNTLTFVVLFASLRGMSYHHR--AV------IMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHW  287 (318)
Q Consensus       226 ~~~~~~~l~i~~~~L~~L~i~~~--~~------i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~  287 (318)
                           ..+ ...++|+.|.++++  ..      -..++|++|+++++...   ...++++++|+.+.+..+.+
T Consensus       171 -----~~f-~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         171 -----RAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             -----TTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             -----hhh-ccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence                 000 13467778877776  11      23478999999887654   33578899999998876554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.12  E-value=6.5e-06  Score=71.61  Aligned_cols=79  Identities=9%  Similarity=0.112  Sum_probs=46.2

Q ss_pred             cCccceEEEeee-------------EEEeCCCeeEEEEEecccc-------ceeecCCCCceEEEEEEEeccCCCCChhh
Q 048811          237 FASLRGMSYHHR-------------AVIMAPNLQLIRIVDNMLM-------EYEVHEMQSIQQATLDLQHWESDTVDPQR  296 (318)
Q Consensus       237 ~~~L~~L~i~~~-------------~~i~~P~L~~L~~~~~~~~-------~~~~~~~~sL~~l~l~~~~~~~~~~~~~~  296 (318)
                      .++|+.|++++|             .....|+|+.|+++++...       ...+...+.|++++|.-+..  .......
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i--~~~g~~~  262 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL--SARGAAA  262 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC--CHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc--CchhhHH
Confidence            457778877776             1224677888888776532       12355677888877754421  1111334


Q ss_pred             HHHHhcCC--CceeEEEeecCcC
Q 048811          297 ARNLIEGV--ATTACLILSGGVL  317 (318)
Q Consensus       297 ~~~~l~~l--~~v~~L~l~~~~~  317 (318)
                      +.+.+...  ..++.|+|+++.+
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEI  285 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HHHHhhhccCCCCCEEECCCCcC
Confidence            44555443  4678888877643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.08  E-value=0.00015  Score=57.20  Aligned_cols=113  Identities=13%  Similarity=0.112  Sum_probs=70.5

Q ss_pred             cccCCCCCccCCcccEEEecccceecC-C--CCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCC
Q 048811          142 PMQLPGCVYSSMTLEVLRLHTAFRFAD-P--PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPP  218 (318)
Q Consensus       142 ~~~lp~~~~~~~~L~~L~L~~~~~~~~-~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~  218 (318)
                      -..+|..+.  +++++|+| .+..+.. .  ....++++|++|+|.+..+... ....+...+.|++|.+.+.....   
T Consensus        20 L~~iP~~lp--~~l~~L~L-s~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~l~~---   92 (192)
T d1w8aa_          20 LKEIPRDIP--LHTTELLL-NDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKIKE---   92 (192)
T ss_dssp             CSSCCSCCC--TTCSEEEC-CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCCCE---
T ss_pred             cCccCCCCC--CCCCEEEe-CCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccccccc---
Confidence            335565442  57888888 6665532 2  2234678888888887776543 34456677888888888876620   


Q ss_pred             CceeeeccccceEEEEEEcCccceEEEeeeEEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEec
Q 048811          219 ANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHW  287 (318)
Q Consensus       219 ~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~  287 (318)
                                      +....          ....|+|++|.+.++...   ...+..+++|+++.+..+.+
T Consensus        93 ----------------l~~~~----------F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          93 ----------------ISNKM----------FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             ----------------ECSSS----------STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ----------------cCHHH----------HhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence                            11111          112567777777776554   33567889999988876544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.96  E-value=0.0004  Score=58.66  Aligned_cols=63  Identities=16%  Similarity=0.155  Sum_probs=44.5

Q ss_pred             CCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          148 CVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       148 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .+..+++|+.+++ .++.+...+.. .+++|++|++.++..... ....+.+++.++.|.+.++..
T Consensus       145 ~~~~l~~L~~l~l-~~n~l~~l~~~-~~~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~~s~n~l  207 (305)
T d1xkua_         145 AFQGMKKLSYIRI-ADTNITTIPQG-LPPSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSI  207 (305)
T ss_dssp             GGGGCTTCCEEEC-CSSCCCSCCSS-CCTTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccCcccc-ccCCccccCcc-cCCccCEEECCCCcCCCC-ChhHhhccccccccccccccc
Confidence            3345578888888 77766554433 478899999887665443 344567888999999888866

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.60  E-value=3.2e-05  Score=67.01  Aligned_cols=198  Identities=12%  Similarity=0.034  Sum_probs=120.3

Q ss_pred             CCChhHHHHHHHH-CCceEEEEEEccCc---cccCCCCCccCCcccEEEecccceecCCC------------CcCCCCCC
Q 048811          115 RDRFPLWVSQAIM-RNVREMEIDIIQYA---PMQLPGCVYSSMTLEVLRLHTAFRFADPP------------DGVCFPQL  178 (318)
Q Consensus       115 ~~~~~~wl~~a~~-~~l~~L~l~~~~~~---~~~lp~~~~~~~~L~~L~L~~~~~~~~~~------------~~~~~~~L  178 (318)
                      .+.+..++..... ..+++|+++.....   ...+...+...++|+.|++ .++......            ....+++|
T Consensus        17 ~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l-~~~~~~~~~~~~~~~~~~l~~~l~~~~~L   95 (344)
T d2ca6a1          17 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF-SDIFTGRVKDEIPEALRLLLQALLKCPKL   95 (344)
T ss_dssp             SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEEC-CSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEEC-CCCcccccccccchHHHHHHHHHhhCCCc
Confidence            3444555554443 57999988654221   1223334556789999999 665432211            11257899


Q ss_pred             ceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecCCCCCCCce--eeeccccceEEEEEEcCccceEEEeee-----
Q 048811          179 KILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQPDDPPANF--IIQSTTLNTLTFVVLFASLRGMSYHHR-----  248 (318)
Q Consensus       179 ~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~~~~~~~~~--~i~s~~~~~~~l~i~~~~L~~L~i~~~-----  248 (318)
                      ++|+|.++.+.+..   +...+..++.|++|.+.+|.....+...+  .+...  .........+.|+.|.++++     
T Consensus        96 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~--~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1          96 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL--AVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH--HHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             ccccccccccccccccchhhhhcccccchheeccccccccccccccccccccc--ccccccccCcccceeeccccccccc
Confidence            99999999988775   55666789999999999986521100000  00000  00000012456777777764     


Q ss_pred             -------EEEeCCCeeEEEEEecccc--------ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEee
Q 048811          249 -------AVIMAPNLQLIRIVDNMLM--------EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILS  313 (318)
Q Consensus       249 -------~~i~~P~L~~L~~~~~~~~--------~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~  313 (318)
                             ..-..+.|+.|.+..+...        ...+..++.|+.+++..+...  ......+...+..+++++.|.|+
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~--~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT--HLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH--HHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccc--ccccccccccccccccchhhhhh
Confidence                   1234678999999876543        113557889999887544311  11135577888999999999998


Q ss_pred             cCcC
Q 048811          314 GGVL  317 (318)
Q Consensus       314 ~~~~  317 (318)
                      ++.+
T Consensus       252 ~n~i  255 (344)
T d2ca6a1         252 DCLL  255 (344)
T ss_dssp             TCCC
T ss_pred             cCcc
Confidence            8754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00081  Score=54.57  Aligned_cols=83  Identities=14%  Similarity=0.100  Sum_probs=53.3

Q ss_pred             CCceEEEEEEccCccccCCCCC-ccCCcccEEEecccceecCC---CCcCCCCCCceeEeeEEEeCcchhhhhhcCCccc
Q 048811          128 RNVREMEIDIIQYAPMQLPGCV-YSSMTLEVLRLHTAFRFADP---PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSL  203 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L  203 (318)
                      +++++|+++....  ..+|... ..+++|++|+| .++.+...   ....+++.+++|.+..+.-........+.++|.|
T Consensus        29 ~~l~~L~Ls~n~i--~~l~~~~f~~l~~L~~L~l-s~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEI-SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESCCC--CEECTTTTTTCTTCCEEEE-ESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTC
T ss_pred             CCCCEEECcCCcC--CccChhHhhccchhhhhhh-ccccccceeeccccccccccccccccccccccccccccccccccc
Confidence            4788888876532  3455543 45788999999 66544332   2234678888887765432222234557788999


Q ss_pred             ceeeeeeecC
Q 048811          204 TELSLTVLIQ  213 (318)
Q Consensus       204 e~L~l~~c~~  213 (318)
                      +.|.+.++..
T Consensus       106 ~~l~l~~~~l  115 (242)
T d1xwdc1         106 QYLLISNTGI  115 (242)
T ss_dssp             CEEEEESCCC
T ss_pred             cccccchhhh
Confidence            9999988865

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0016  Score=57.40  Aligned_cols=108  Identities=12%  Similarity=0.137  Sum_probs=74.8

Q ss_pred             eEeEEEEEeeCCCCCCChhHHHHHH-HHCCceEEEEEEccCcc---ccCCCCCccCCcccEEEecccceecCC-----C-
Q 048811          101 SIHTFSLRSVNAIRRDRFPLWVSQA-IMRNVREMEIDIIQYAP---MQLPGCVYSSMTLEVLRLHTAFRFADP-----P-  170 (318)
Q Consensus       101 ~l~~l~l~~~~~~~~~~~~~wl~~a-~~~~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~~-----~-  170 (318)
                      .++++.+++    ..-....|.... ..++++.|.++.+....   ..++..+..+++|+.|+| .++.+.+.     . 
T Consensus         3 ~l~~ld~~~----~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdL-s~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           3 DIQSLDIQC----EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL-RSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEES----CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEEC-TTCCCHHHHHHHHHH
T ss_pred             CCCEEEeeC----CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEEC-cCCcCChHHHHHHHH
Confidence            477888864    444456676644 34799999999884322   233444567899999999 66654321     0 


Q ss_pred             -CcCCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecC
Q 048811          171 -DGVCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       171 -~~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~  213 (318)
                       .....++|++|+|.++.+++.+   +...+..|+.|++|.+.++..
T Consensus        78 ~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence             0113457999999999998776   455677899999999988754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.07  E-value=0.00012  Score=56.51  Aligned_cols=46  Identities=13%  Similarity=-0.015  Sum_probs=28.1

Q ss_pred             eecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecC
Q 048811          270 EVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGG  315 (318)
Q Consensus       270 ~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~  315 (318)
                      .+...++|++++|+.+.+..+......+...+...++++.|.++..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            3455677777777655433222224566777777788888777543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.011  Score=47.43  Aligned_cols=67  Identities=15%  Similarity=0.178  Sum_probs=41.1

Q ss_pred             cCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          144 QLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       144 ~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .+|..+.  ++++.|+| .+..+...+.  ..++++|++|+|.++.+.+.--...+.+++.+++|.+..+..
T Consensus        22 ~iP~~l~--~~l~~L~L-s~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~   90 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRF-VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   90 (242)
T ss_dssp             SCCSCSC--SCCSEEEE-ESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT
T ss_pred             CcCCCCC--CCCCEEEC-cCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccc
Confidence            4555443  46788888 6555444332  346788888888777554321123356778888887777654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.88  E-value=0.0033  Score=49.13  Aligned_cols=84  Identities=14%  Similarity=0.041  Sum_probs=58.4

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCC--CCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADP--PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE  205 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  205 (318)
                      .++++|+++........-+..+...++|+.|+| .+..+...  .....+++|++|+|++..+..- -...+.+.|.|++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L-~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l-~~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLEL-KRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEEC-CSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCCE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeec-cccccccccccccccccccceeeecccccccc-CHHHHhCCCcccc
Confidence            378888887653322222233345689999999 77655443  2344789999999998887643 2345788999999


Q ss_pred             eeeeeecC
Q 048811          206 LSLTVLIQ  213 (318)
Q Consensus       206 L~l~~c~~  213 (318)
                      |.|.++..
T Consensus       107 L~L~~N~l  114 (192)
T d1w8aa_         107 LNLYDNQI  114 (192)
T ss_dssp             EECCSSCC
T ss_pred             cccCCccc
Confidence            99999877

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.00022  Score=63.20  Aligned_cols=59  Identities=14%  Similarity=0.097  Sum_probs=35.3

Q ss_pred             cccEEEecccceecCC---CCcCCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecC
Q 048811          154 TLEVLRLHTAFRFADP---PDGVCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       154 ~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      +|++|++ .+..+.+.   .....+++|++|+|.+|.+.+.+   +...+..||+|++|+|.++..
T Consensus         3 ~l~~ld~-~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i   67 (460)
T d1z7xw1           3 DIQSLDI-QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL   67 (460)
T ss_dssp             EEEEEEE-ESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred             CCCEEEe-eCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcC
Confidence            5677777 44433221   01124677777777777776654   344456777777777776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.58  E-value=0.00043  Score=53.35  Aligned_cols=40  Identities=15%  Similarity=0.100  Sum_probs=23.3

Q ss_pred             CCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecC
Q 048811          174 CFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       174 ~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ..+.|++|+|.++.+.+..   +...+..++.|++|+|.+|..
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i   84 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL   84 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhc
Confidence            3455666666666655543   444555566666666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.24  E-value=0.0038  Score=52.88  Aligned_cols=128  Identities=18%  Similarity=0.164  Sum_probs=68.3

Q ss_pred             CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811          128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS  207 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  207 (318)
                      .++++|+++...  -..+|..   .++|++|+| .+..+...|.  .+.+|++|++.+..+..  +..   --+.|++|+
T Consensus        38 ~~l~~LdLs~~~--L~~lp~~---~~~L~~L~L-s~N~l~~lp~--~~~~L~~L~l~~n~l~~--l~~---lp~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLG--LSSLPEL---PPHLESLVA-SCNSLTELPE--LPQSLKSLLVDNNNLKA--LSD---LPPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSC--CSCCCSC---CTTCSEEEC-CSSCCSSCCC--CCTTCCEEECCSSCCSC--CCS---CCTTCCEEE
T ss_pred             cCCCEEEeCCCC--CCCCCCC---CCCCCEEEC-CCCCCccccc--chhhhhhhhhhhcccch--hhh---hcccccccc
Confidence            467777765543  2345543   357888888 6666655554  35678888777665432  221   124588888


Q ss_pred             eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----EEEeCCCeeEEEEEecccc-ceeecCCCCceEEEE
Q 048811          208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQATL  282 (318)
Q Consensus       208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l~l  282 (318)
                      +.++....              .... -..++|+.|++.++    .....+.+..+.+...... ...++.++.++.+.+
T Consensus       105 L~~n~l~~--------------lp~~-~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l  169 (353)
T d1jl5a_         105 VSNNQLEK--------------LPEL-QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYA  169 (353)
T ss_dssp             CCSSCCSS--------------CCCC-TTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred             cccccccc--------------ccch-hhhccceeeccccccccccccccccccchhhccccccccccccccccceeccc
Confidence            87776521              1111 12356666666665    2223445555555444332 223444555555544


Q ss_pred             E
Q 048811          283 D  283 (318)
Q Consensus       283 ~  283 (318)
                      .
T Consensus       170 ~  170 (353)
T d1jl5a_         170 D  170 (353)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.07  E-value=0.0046  Score=52.28  Aligned_cols=89  Identities=18%  Similarity=0.108  Sum_probs=61.7

Q ss_pred             CcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEE
Q 048811          153 MTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLT  232 (318)
Q Consensus       153 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~  232 (318)
                      .++++|+| .++.+...|.  ..++|++|+|++..+.+     +-...++|++|.+.++....              ...
T Consensus        38 ~~l~~LdL-s~~~L~~lp~--~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~l~~n~l~~--------------l~~   95 (353)
T d1jl5a_          38 RQAHELEL-NNLGLSSLPE--LPPHLESLVASCNSLTE-----LPELPQSLKSLLVDNNNLKA--------------LSD   95 (353)
T ss_dssp             HTCSEEEC-TTSCCSCCCS--CCTTCSEEECCSSCCSS-----CCCCCTTCCEEECCSSCCSC--------------CCS
T ss_pred             cCCCEEEe-CCCCCCCCCC--CCCCCCEEECCCCCCcc-----cccchhhhhhhhhhhcccch--------------hhh
Confidence            47899999 7777766664  46899999998877653     33345789999999887621              111


Q ss_pred             EEEEcCccceEEEeee------EEEeCCCeeEEEEEeccc
Q 048811          233 FVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNML  266 (318)
Q Consensus       233 l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~  266 (318)
                         -.+.|+.|+++++      .....++|+.|.+.++..
T Consensus        96 ---lp~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_          96 ---LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             ---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             ---hccccccccccccccccccchhhhccceeeccccccc
Confidence               1256888888877      122456788888776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.05  E-value=0.00096  Score=51.25  Aligned_cols=63  Identities=16%  Similarity=0.123  Sum_probs=40.8

Q ss_pred             ccCCcccEEEecccceecCC--CC----cCCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecC
Q 048811          150 YSSMTLEVLRLHTAFRFADP--PD----GVCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       150 ~~~~~L~~L~L~~~~~~~~~--~~----~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ..+++|++|+| .++.+.+.  ..    ....+.|++|+|.++.+.+++   +...+..++.|++|++.++..
T Consensus        41 ~~n~~L~~L~L-s~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          41 CNSKHIEKFSL-ANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             TTCSCCCEEEC-TTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             hhCCccceeec-cccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            34567788888 66654321  00    114677888888888877766   445566778888888877654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.005  Score=46.49  Aligned_cols=70  Identities=16%  Similarity=0.097  Sum_probs=46.9

Q ss_pred             cccCCCCCccCCcccEEEecccce-ecCC--CCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811          142 PMQLPGCVYSSMTLEVLRLHTAFR-FADP--PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       142 ~~~lp~~~~~~~~L~~L~L~~~~~-~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      ....|..+...++|++|.| .+.. +...  ....++++|+.|+|.+..+..-. ...+.+.++|++|+|.+...
T Consensus        20 ~~~~p~~l~~l~~l~~L~l-~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYI-ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEEC-CSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCC
T ss_pred             CccCcccccCccccCeeec-CCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCCC
Confidence            3455666666778888888 5442 2222  23457888888888888765432 34567788888888888876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=94.66  E-value=0.012  Score=49.22  Aligned_cols=83  Identities=16%  Similarity=0.226  Sum_probs=55.5

Q ss_pred             CceEEEEEEccC-ccccCCCCCccCCcccEEEecccc-eec-CCC-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811          129 NVREMEIDIIQY-APMQLPGCVYSSMTLEVLRLHTAF-RFA-DPP-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT  204 (318)
Q Consensus       129 ~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~-~~~-~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  204 (318)
                      +|.+|++..... +...+|..+...++|++|+| .++ .+. ..| ....+++|++|+|.++.+... ....+..++.|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~L-s~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI-GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEE-EEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccc-ccccccccccccccccccccchhhhcccccccc-ccccccchhhhc
Confidence            467777766533 33467888888888888888 543 232 333 344788888888888876553 334466778888


Q ss_pred             eeeeeeecC
Q 048811          205 ELSLTVLIQ  213 (318)
Q Consensus       205 ~L~l~~c~~  213 (318)
                      .+.+.++..
T Consensus       129 ~l~l~~N~~  137 (313)
T d1ogqa_         129 TLDFSYNAL  137 (313)
T ss_dssp             EEECCSSEE
T ss_pred             ccccccccc
Confidence            888877643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.0048  Score=46.55  Aligned_cols=61  Identities=15%  Similarity=-0.079  Sum_probs=41.0

Q ss_pred             cCCcccEEEecccceecCCCCc-CCCCCCceeEeeEEE-eCcchhhhhhcCCcccceeeeeeecC
Q 048811          151 SSMTLEVLRLHTAFRFADPPDG-VCFPQLKILQIYITH-PENRVTEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       151 ~~~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .|...+.++. .+......|.. .++++|++|+|.+.. +..-. ...+.+.+.|+.|.+.++..
T Consensus         6 ~c~~~~~l~c-~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~l   68 (156)
T d2ifga3           6 CPHGSSGLRC-TRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGL   68 (156)
T ss_dssp             CCSSSSCEEC-CSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCC
T ss_pred             CcCCCCeEEe-cCCCCccCcccccCccccCeeecCCCccccccC-chhhccccccCcceeecccc
Confidence            3455666777 55555454433 378899999997553 33221 23477899999999999976

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.00  E-value=0.012  Score=44.63  Aligned_cols=36  Identities=22%  Similarity=0.096  Sum_probs=16.3

Q ss_pred             CCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeee
Q 048811          175 FPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTV  210 (318)
Q Consensus       175 ~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~  210 (318)
                      .++|+.+++.++.+.+++   +...+..++.|+.++|..
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCC
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeecc
Confidence            344555555555444443   223334445555444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=0.0079  Score=45.56  Aligned_cols=79  Identities=11%  Similarity=0.124  Sum_probs=42.2

Q ss_pred             CCceEEEEEEccCccc-cCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcc-----h-hhhhhc
Q 048811          128 RNVREMEIDIIQYAPM-QLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENR-----V-TEKLFC  198 (318)
Q Consensus       128 ~~l~~L~l~~~~~~~~-~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~-----~-l~~ll~  198 (318)
                      ..+++|+++....... .++..+..+++|+.|+| .+..+.+.+.  ......|++|+|.+..+...     . ...++.
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L-s~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL-SGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC-TTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCccccccc-ccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            3566666665533222 12233334567777777 5555544322  22445677777766655431     1 445666


Q ss_pred             CCcccceee
Q 048811          199 SCPSLTELS  207 (318)
Q Consensus       199 ~cp~Le~L~  207 (318)
                      .||.|+.|+
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.96  E-value=0.097  Score=39.14  Aligned_cols=40  Identities=18%  Similarity=0.112  Sum_probs=21.8

Q ss_pred             CCCCCceeEeeEEEeCcch-hhhhhcCCcccceeeeeeecC
Q 048811          174 CFPQLKILQIYITHPENRV-TEKLFCSCPSLTELSLTVLIQ  213 (318)
Q Consensus       174 ~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~  213 (318)
                      .+++|++|+|++..+.+-. +...+..||+|+.|++++...
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i  103 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL  103 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcc
Confidence            3555666666555555432 344445566666666665554