Citrus Sinensis ID: 048826

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-----
Protein Sequence
MLQWTRSADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKIFYY
Secondary Structure (PSIPRED)
cEEEccccccccccccccHHHHHccccccccccEEEEEcccccccccccccccccccEEEEEEccccccccccccccccccEEEEEcccccEEEcccccccccccccccccEEEEEccccccccccccccccccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccccEEEEEccccEEEcccccccccccEEEEcccccccccccccccccccccEEEEccccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEEccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEccccccccccccccccccccccccccccEEEEEccccccccccccccccHHcccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccHHHHHHHccccccccccccEEEEccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccccccccHHHHHHHcccccccccccccccEEEEccEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccccHHHHHHHcccccccEEEEEEcccccccccccccccHHHcEEEEEcccccccccccccccccccEEEEcccccEEEccHHHcccccccccccccEEccccHHHHHHHccccccccccccccHHEEEcccccHHHHccHHHccHHHHHHHHccHHHcccccccccccEEEEEcccccEccccccccccccEEEEEccccccccccccccccccccEEEEEcccccccccccccHHccccccccEEEEcccccccccccccccccccHHcccccccEEEEEcccccHHHccccccccccccEEEEcccccccccccccccccccEEEEcccccHccccHHHccccccccEEEEEcccccccccccccccccccEEEEcccccHcccccHcccccHHHHccccccccEEEccccccHHcccHHccccccccccccccccccccEEEEccccccccccHHccccccccEEEEcccccHccccccccccccccEEEEccccccccccccccccccccEEEEcccccHccccccccccccccEEEEcccccccccccccccccccEEEEcccHHHHHHHHHcccHHcccccccEEEEcccccHHcccccccccccccccccccccccEEEEcccccHHcccHHccccccccEEEEcccccccccccccccccccEEEEcccHHHHHHccccccccccccccccEEEEccEEEEc
Coil and Loop (DISEMBL)
mlqwtrsadgsssreaetEKGVLdmlkphknlkqfcisgyggtkfptwlgdssfsnlvilkfedcgmcttwpsvgqlpslkhlAVSGMSKVkrlgsefygndsstpfpcletlrfedmeewedwiphgssqgvegfpklRELHVIRCSklqgtfpehlPALEMLAIEKCEELLASITClpalcklkiygckkvvwrsstdhlgsqnsvvcgdtsnqvfltgplkprlpkleeleinDMKEQTYIWKSHNELLQDICSlkrltidscpklqSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGlvklpqsslslsslreieiykcsslvsfpevalpsklkkiQFRECDalkllpeawmsdtnsSLEILSIWVCHSLtylagvqlprsLKRLVILNCDNIRTLTMeegiqssssrRYTSSLLEhlhiescpsltrifsknelpatleslevgnlppslkslsvYGCSKLESIAErldnntsleyinisncenlkilpsGLHNLRQLQEITIqrcgnlesfpeggllcAKLTRLTILDCKRLealpkglhnltslqqltigkggelpsleedglptnlhsLWIEDNMEIWKSMIERgrgfhrfsslrrltiincdddmvsfppepedvrlgttlplpasltslwisnfpnlerlsssivdlqnltslylldcpklryfpekglpsslLQLHIyrcplieekcrkdggqYWDLLThipyariagkifyy
Flexible Loop (DISEMBL)
mlqwtrsadgsssreaetekgvldmlkphkNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGsefygndsstpfpCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWRSSTDhlgsqnsvvcgdtsnqvfltgplkprlpklEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGlvklpqsslslssLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLtmeegiqssssRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKIFYY
Low Complexity Region (SEG)
MLQWTRSADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGplkprlpkleeleINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQsslslsslREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQssssrrytssLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRlgttlplpasltslWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKIFYY
Disordered region (IsUnstruct)
*************************LKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVA*******QQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTME*************SLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELP*LEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPP**EDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKIFY*
Disordered Region (DISOPRED)
MLQWTR*AD*******ETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWR*******SQNSVVCGDTSNQVFLTG**KPRLPKLEELEINDMKEQTYIWK********ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPE*****TNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEG*******RYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWK*********HRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKIFYY
Disordered Region (DISEMBL)
*******************KGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLV*********QLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEG*********TSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKIFYY
Disordered Region (DISPRO)
MLQWTRSADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKIFYY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQWTRSADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKIFYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	725	2.2.26 [Sep-21-2011]
Q9LRR4	1054	Putative disease resistan	yes	no	0.384	0.264	0.301	1e-32
Q9LRR5	1424	Putative disease resistan	no	no	0.230	0.117	0.386	6e-29
Q7XA39	988	Putative disease resistan	N/A	no	0.379	0.278	0.270	1e-16
Q7XA42	979	Putative disease resistan	N/A	no	0.340	0.252	0.240	9e-13
Q7XBQ9	970	Disease resistance protei	N/A	no	0.355	0.265	0.298	3e-11
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.525	0.292	0.260	2e-10
Q7XA40	992	Putative disease resistan	N/A	no	0.393	0.287	0.249	6e-10
Q40392	1144	TMV resistance protein N	N/A	no	0.441	0.279	0.247	3e-07
Q9LVT1	623	Putative disease resistan	no	no	0.131	0.152	0.267	3e-06
Q9RBS2	1024	Protein PopC OS=Ralstonia	no	no	0.285	0.202	0.306	4e-06

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  142 bits (358), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 157/318 (49%), Gaps = 39/318 (12%)

Query: 7    SADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCG 66
            S + ++    + E  V + L+PH+++++  I  Y G +FP WL D SFS +V ++  +C 
Sbjct: 742  SENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQ 801

Query: 67   MCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGN------DSSTPFPCLETLRFEDMEE 120
             CT+ PS+GQLP LK L +SGM  ++ +G +FY +          PF  LETLRF+++ +
Sbjct: 802  YCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPD 861

Query: 121  WEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLP 180
            W++W+    ++G + FP L++L ++RC +L GT P                     T LP
Sbjct: 862  WQEWLDVRVTRG-DLFPSLKKLFILRCPELTGTLP---------------------TFLP 899

Query: 181  ALCKLKIYGCKKVVWRSSTDHLGSQN-SVVCGDTSNQVFLTGPLKPRLPKLEELEINDMK 239
            +L  L IY C  + ++        +N   +   +S    +  PL      L++LE+ D  
Sbjct: 900  SLISLHIYKCGLLDFQPDHHEYSYRNLQTLSIKSSCDTLVKFPLN-HFANLDKLEV-DQC 957

Query: 240  EQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRL--- 296
               Y  +  NE L+   +L+ L I+ C  LQ L       Q  Q+   +CR  YLR    
Sbjct: 958  TSLYSLELSNEHLRGPNALRNLRINDCQNLQLLPKLNALPQNLQVTITNCR--YLRQPME 1015

Query: 297  ---RYCKGLVKLPQSSLS 311
               +Y      LP+S++S
Sbjct: 1016 QQPQYHHPQFHLPRSNVS 1033

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  129 bits (325), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 9/176 (5%)

Query: 1   MLQWTRSADG----SSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSN 56
           +L+WT    G    S +  A  +K VL ML+PH +LK FCI  Y G  FP WLGDSSF  
Sbjct: 726 ILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFG 785

Query: 57  LVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFY---GNDSSTPFPCLETL 113
           +  +    C +C + P VGQLPSLK+L++   + ++++G +F+    N    PF  L+ L
Sbjct: 786 ITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQSLQIL 845

Query: 114 RFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKC 169
           +F  M  W++WI      G+  FP L++L + RC  L+  FPE LP+   + I  C
Sbjct: 846 KFYGMPRWDEWICPELEDGI--FPCLQKLIIQRCPSLRKKFPEGLPSSTEVTISDC 899

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 139/318 (43%), Gaps = 43/318 (13%)

Query: 9   DGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMC 68
           DG +  E++ E  VL+ LKPH NLK   I  +GG +FP+W+  S    ++ ++ + C  C
Sbjct: 684 DGPNRYESK-EVKVLEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNC 742

Query: 69  TTWPSVGQLPSLKHLAV-SGMSKVKRLGSEFYGNDSST--PFPCLETLRFEDMEEWEDWI 125
              P  G+LP L++L + +G ++V+ +  +   +  ST   FP L+ LR       +  +
Sbjct: 743 LCLPPFGELPCLENLELQNGSAEVEYVEEDDVHSRFSTRRSFPSLKKLRIWFFRSLKGLM 802

Query: 126 PHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKL 185
                +G E FP L E+ ++ C      FP                       L ++ KL
Sbjct: 803 ---KEEGEEKFPMLEEMAILYCPLF--VFP----------------------TLSSVKKL 835

Query: 186 KIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIW 245
           +++G       SS  +L +  S+  G       L   +   L  LE L   D K    + 
Sbjct: 836 EVHGNTNTRGLSSISNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSFFDFKNLKDLP 895

Query: 246 KSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL 305
            S    L  + +LKRL I+SC  L+S          +Q  E    L  L ++YCK L  L
Sbjct: 896 TS----LTSLNALKRLQIESCDSLESF--------PEQGLEGLTSLTQLFVKYCKMLKCL 943

Query: 306 PQSSLSLSSLREIEIYKC 323
           P+    L++L  + +  C
Sbjct: 944 PEGLQHLTALTNLGVSGC 961

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 134/353 (37%), Gaps = 106/353 (30%)

Query: 9   DGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMC 68
           DG    ++E    VL+ LKPH NLK   I+G+GG + P W+  S   N+V ++   C  C
Sbjct: 684 DGKHRYDSE----VLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENC 739

Query: 69  TTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHG 128
           +  P  G+LP L+ L +   S                           D+E  ED +  G
Sbjct: 740 SCLPPFGELPCLESLELHTGSA--------------------------DVEYVEDNVHPG 773

Query: 129 SSQGVEGFPKLRELHVIRCSKLQGTFP----EHLPALEMLAIEKCEELLASITCLPALCK 184
                  FP LR+L +   S L+G       +  P LE +    C   +  I  L ++  
Sbjct: 774 R------FPSLRKLVIWDFSNLKGLLKMEGEKQFPVLEEMTFYWCPMFV--IPTLSSVKT 825

Query: 185 LKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYI 244
           LK+      V RS ++                          L  L  L+I+D  E T +
Sbjct: 826 LKVIVTDATVLRSISN--------------------------LRALTSLDISDNVEATSL 859

Query: 245 WKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK 304
                E+ + + +LK                                 YL++ + + L +
Sbjct: 860 ---PEEMFKSLANLK---------------------------------YLKISFFRNLKE 883

Query: 305 LPQSSLSLSSLREIEIYKCSSLVSFPEVALP--SKLKKIQFRECDALKLLPEA 355
           LP S  SL++L+ ++   C +L S PE  +   + L ++    C  LK LPE 
Sbjct: 884 LPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVSNCMMLKCLPEG 936

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 135/302 (44%), Gaps = 44/302 (14%)

Query: 303 VKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKI------QFRECDAL------- 349
           VK+ ++    S+L  ++IY     +  PE    S LK I       FR C  L       
Sbjct: 695 VKVLEALKPHSNLTSLKIYGFRG-IHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLP 753

Query: 350 --KLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGI 407
             + L   W S     +E + I V HS  +   ++ P SL++L I +  +++ L  +EG 
Sbjct: 754 CLESLELHWGSADVEYVEEVDIDV-HS-GFPTRIRFP-SLRKLDIWDFGSLKGLLKKEGE 810

Query: 408 QSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSV-YGCSK 466
           +          +LE + I  CP LT       L + L +L          SL + Y    
Sbjct: 811 EQFP-------VLEEMIIHECPFLT-------LSSNLRAL---------TSLRICYNKVA 847

Query: 467 LESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLL-C 525
                E   N  +L+Y+ IS C NLK LP+ L +L  L+ + IQ C  LES PE GL   
Sbjct: 848 TSFPEEMFKNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGL 907

Query: 526 AKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNME 585
           + LT L +  C  L+ LP+GL +LT+L  L I    +L    E G+  + H +    N+ 
Sbjct: 908 SSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVN 967

Query: 586 IW 587
           I+
Sbjct: 968 IY 969

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 187/434 (43%), Gaps = 53/434 (12%)

Query: 294  LRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLP 353
            L ++Y K L KL + +L L SL+E+ +   ++L   P+++L   L+++    C +L  LP
Sbjct: 595  LIMKYSK-LEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVGCKSLVTLP 653

Query: 354  EAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSR 413
             +  + T   L  L +  C  L          SL+ L +  C N+R       I+   S 
Sbjct: 654  SSIQNATK--LIYLDMSDCKKLESFPTDLNLESLEYLNLTGCPNLRNFP---AIKMGCSD 708

Query: 414  RYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGN-------LPPSLKSLSVYGCSK 466
                     + +E C      F    LPA L+ L+           P  L  L+V G  K
Sbjct: 709  VDFPEGRNEIVVEDC------FWNKNLPAGLDYLDCLTRCMPCEFRPEQLAFLNVRG-YK 761

Query: 467  LESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCA 526
             E + E + +  SLE +++S  ENL  +P  L    +L+ + +  C +L + P       
Sbjct: 762  HEKLWEGIQSLGSLEGMDLSESENLTEIPD-LSKATKLESLILNNCKSLVTLPSTIGNLH 820

Query: 527  KLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNM-- 584
            +L RL + +C  LE LP  + NL+SL+ L +     L S     + TN+  L++E+    
Sbjct: 821  RLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPL--ISTNIVWLYLENTAIE 877

Query: 585  EIWKSM----------IERGRGFH------RFSSLRRLTIINCDDDMVSFPPEPEDVR-- 626
            EI  ++          +++  G          SSL  L +  C   + SFP   E ++  
Sbjct: 878  EIPSTIGNLHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGC-SSLRSFPLISESIKWL 936

Query: 627  -LGTT-------LPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEK 678
             L  T       L    +L +L ++N  +L  L ++I +LQ L S  + +C  L   P  
Sbjct: 937  YLENTAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPID 996

Query: 679  GLPSSLLQLHIYRC 692
               SSL+ L +  C
Sbjct: 997  VNLSSLMILDLSGC 1010

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 127/333 (38%), Gaps = 48/333 (14%)

Query: 13  SREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWP 72
           +R    E  VL+ LKPH NLK   I  + G   P W+  S   N+V +    C  C+  P
Sbjct: 694 NRYESEEVKVLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLP 753

Query: 73  SVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQG 132
             G+L                              PCLE+L  +D     +++       
Sbjct: 754 PFGEL------------------------------PCLESLELQDGSVEVEYVEDSGFLT 783

Query: 133 VEGFPKLRELHVIRCSKLQG----TFPEHLPALEMLAIEKCEELLASITCLPALCKLKIY 188
              FP LR+LH+     L+G       E  P LE + I  C   +     L ++ KL+I+
Sbjct: 784 RRRFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMKISDCPMFV--FPTLSSVKKLEIW 841

Query: 189 GCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSH 248
           G       SS  +L +  S+          L   +   L  L  L ++ ++    +  S 
Sbjct: 842 GEADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENLIYLSVSFLENLKELPTS- 900

Query: 249 NELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS 308
              L  + +LK L I  C  L+SL  EE  +    L EL        + +C  L  LP+ 
Sbjct: 901 ---LASLNNLKCLDIRYCYALESL-PEEGLEGLSSLTELF-------VEHCNMLKCLPEG 949

Query: 309 SLSLSSLREIEIYKCSSLVSFPEVALPSKLKKI 341
              L++L  ++I  C  L+   E  +     KI
Sbjct: 950 LQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKI 982

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 158/408 (38%), Gaps = 88/408 (21%)

Query: 354 EAWMSDTNSSLEILSIWVC-HSLTYLAGVQLPRSLKRLVILNC-------------DNIR 399
           E  MS+   ++ + +IWV  +S T     Q  +++KRL + N              +N+R
Sbjct: 518 EEVMSNNTGTMAMEAIWVSSYSSTLRFSNQAVKNMKRLRVFNMGRSSTHYAIDYLPNNLR 577

Query: 400 TLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVG------NLP 453
                     S    +   +L HL +    SL  ++++ +   +L  +++         P
Sbjct: 578 CFVCTNYPWESFPSTFELKMLVHLQLRH-NSLRHLWTETKHLPSLRRIDLSWSKRLTRTP 636

Query: 454 -----PSLKSLSVYGCSKLESIAERLD----------------------NNTSLEYINIS 486
                P+L+ +++Y CS LE +   L                       N  SLEY+ + 
Sbjct: 637 DFTGMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPCVNVESLEYLGLR 696

Query: 487 NCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGL 546
           +C++L+ LP     ++   +I +Q  G  E           +T+L + + K L ALP  +
Sbjct: 697 SCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSI 756

Query: 547 HNLTSLQQLTIGKGGELPSL-EEDGLPTNLHSLWIEDNM---------EIWKSMIERGRG 596
             L SL  L++    +L SL EE G   NL      D +          + K +I   RG
Sbjct: 757 CRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRG 816

Query: 597 FHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLP-------------ASLTSLWIS 643
           F              D     FPP  E +     L L               SL+SL   
Sbjct: 817 FK-------------DGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKL 863

Query: 644 NFP--NLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHI 689
           +    N E L SSI  L  L SL L DC +L   PE  LP  L +LH+
Sbjct: 864 DLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPE--LPPELNELHV 909

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 59/112 (52%)

Query: 446 SLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQ 505
           ++++  + P L  +++  C  L  +   +   TSL  I+I+NC N+K LP  +  L+ LQ
Sbjct: 455 AIDIAQIFPKLTDITIDYCDDLAELPSTICGITSLNSISITNCPNIKELPKNISKLQALQ 514

Query: 506 EITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTI 557
            + +  C  L+S P       +L  + I  C  L +LP+ + N+ +L+++ +
Sbjct: 515 LLRLYACPELKSLPVEICELPRLVYVDISHCLSLSSLPEKIGNVRTLEKIDM 566

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 115/264 (43%), Gaps = 57/264 (21%)

Query: 444 LESLEVGNLP------PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSG 497
           L+SL V  LP        LK+L    C  L ++   L+N   LE +++   +N K LP  
Sbjct: 208 LKSLPVPELPDVTFEIAHLKNLETVDCD-LHALPATLENLFLLETLSLKGAKNFKALPDA 266

Query: 498 LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTI 557
           +  L  LQE+ +   G L+S P  G   A L RLTI D   LE LP G  +L  L  L++
Sbjct: 267 VWRLPALQELKLSETG-LKSLPPVGGGSA-LQRLTIEDSP-LEQLPAGFADLDQLASLSL 323

Query: 558 GKG---------GELPSLEEDGLPTNLHSLWIEDNMEIWK-----SMIER----GRGFHR 599
                       G+LP+L+         SL ++DN ++ +       +E     G   H 
Sbjct: 324 SNTKLEKLSSGIGQLPALK---------SLSLQDNPKLERLPKSLGQVEELTLIGGRIHA 374

Query: 600 ------FSSLRRLTIINCDDDMVSFPPEPEDV-RLGTTLPLPASLTSLWISNFPNLERLS 652
                  SSL++LT+ N      S    P D   LG       +L  + +SN   L  L 
Sbjct: 375 LPSASGMSSLQKLTVDNS-----SLAKLPADFGALG-------NLAHVSLSNT-KLRDLP 421

Query: 653 SSIVDLQNLTSLYLLDCPKLRYFP 676
           +SI +L  L +L L D PKL   P
Sbjct: 422 ASIGNLFTLKTLSLQDNPKLGSLP 445

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	725
400131587	1388	FB_MR5 [Malus x robusta]	0.884	0.461	0.396	1e-112
356554923	1399	PREDICTED: putative disease resistance R	0.870	0.451	0.372	1e-111
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.921	0.469	0.389	1e-107
45826061	739	resistance protein [Quercus suber]	0.904	0.887	0.391	1e-105
225449649	1418	PREDICTED: putative disease resistance p	0.902	0.461	0.389	1e-104
359495024	1390	PREDICTED: putative disease resistance p	0.88	0.458	0.372	8e-92
224059584	1418	cc-nbs-lrr resistance protein [Populus t	0.910	0.465	0.361	1e-91
359495026	2204	PREDICTED: uncharacterized protein LOC10	0.859	0.282	0.371	5e-91
147770261	1363	hypothetical protein VITISV_004414 [Viti	0.888	0.472	0.357	6e-90
359487255	1336	PREDICTED: putative disease resistance p	0.782	0.424	0.358	3e-89

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 291/734 (39%), Positives = 403/734 (54%), Gaps = 93/734 (12%)

Query: 1    MLQWTRSADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVIL 60
            +L+W+ S+D       ETE  VLDML+PH  LK+  I  Y G +F +W+G   FSN+V++
Sbjct: 737  VLEWSHSSDTR-----ETESAVLDMLQPHTKLKELTIKSYAGKEFSSWVGVPLFSNMVLV 791

Query: 61   KFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEE 120
            + E+C  C + P +G+LP LK L + GM+ V+ +G+EFYG + S PFP LETL F DM+ 
Sbjct: 792  RLEECNNCLSLPPLGKLPHLKELYIRGMNAVESVGAEFYG-ECSLPFPLLETLEFVDMQH 850

Query: 121  WEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLP 180
            W+ W+P  +      FP L+ L V +CSKL+G  PE+L +L  L I KCEELL SI    
Sbjct: 851  WKVWLPFQTDHRGSVFPCLKTLLVRKCSKLEGKLPENLDSLASLEIVKCEELLVSIANYK 910

Query: 181  ALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFL-TGPL-KPRLPKLEELEINDM 238
             L +L I GCK VV  ++        S+   + S    L TG L +  L  + +L+IN  
Sbjct: 911  QLRQLNIDGCKGVVHTAAKVEFELLESLYLSNISELTSLQTGELCRNGLNMVRDLKINGC 970

Query: 239  KEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEE---EKDQQQQLCELSCRLEYLR 295
            +E T   K+   LLQ + SL RL I+      SL+ EE   E D+  QL  L C+LE+L+
Sbjct: 971  EELTSSLKNEAILLQQLISLGRLEIED----NSLLVEELGKEADELLQLQILGCKLEFLK 1026

Query: 296  LRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEA 355
            L+ CK L+KLP+    LSSL+E+ I++CSSLVSFP+V LP  LK I+  E          
Sbjct: 1027 LKKCKNLLKLPEGLNQLSSLQELRIHECSSLVSFPDVGLPPSLKDIEITE---------- 1076

Query: 356  WMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRY 415
                            CHSL Y A  Q+P++L+R+ I +C ++R+L   E + S SS  +
Sbjct: 1077 ----------------CHSLIYFAKSQIPQNLRRIQIRDCRSLRSLVDNEAVGSCSSSSH 1120

Query: 416  TSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLD 475
                LE+L+IE C SLT +   ++L              +L+ L +Y C +LE +A    
Sbjct: 1121 NC--LEYLNIERCQSLTLLSLSDQLVR------------ALRELDIYDCEQLEFLA---- 1162

Query: 476  NNTSLEYINISNCENLKILPSGL---HNLRQLQEITIQRCGNLESFPE--GGLLCAKLTR 530
                               P GL   +    L+   I+RC NL+S P   GG+  + L  
Sbjct: 1163 -------------------PDGLFCNNTNYFLENFRIRRCQNLKSLPRLSGGIRGSNLRE 1203

Query: 531  LTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSM 590
            + I DC RLEALP+ +HN  SL++L I     L        P NL SL I   ++  KS+
Sbjct: 1204 IRITDCDRLEALPEDMHNFNSLEKLIIDYREGLTC----SFPANLTSLMIW-KVKSCKSL 1258

Query: 591  IERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLER 650
             E   G HR +SLR L I   D DMVSFPP+   VR+ T   LP SLT L I  FPNL++
Sbjct: 1259 WELEWGLHRLTSLRYLWIGGEDPDMVSFPPDM--VRMETL--LPKSLTELSIGGFPNLKK 1314

Query: 651  LSSSIVD-LQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDL 709
            LSS     L +L SL L DCPKL   P++GLP SL +L IY CP+++E+C+   G+YW  
Sbjct: 1315 LSSKGFQFLTSLESLELWDCPKLASIPKEGLPLSLTELCIYGCPVLKERCQPGKGRYWHK 1374

Query: 710  LTHIPYARIAGKIF 723
            ++HIPY  I  K+ 
Sbjct: 1375 ISHIPYIDIDWKMI 1388

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 279/749 (37%), Positives = 401/749 (53%), Gaps = 118/749 (15%)

Query: 2    LQWTRSADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILK 61
            L+WT   +  S    E  K VL ML+PHKNL +  I  YGGT FP W+GD S+ +LV LK
Sbjct: 737  LKWTSCMNNQS--HTERAKEVLQMLQPHKNLAKLTIKCYGGTSFPKWIGDPSYKSLVFLK 794

Query: 62   FEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEW 121
             +DC  CT+ P++G L +LK L + GM +V  +  EF GN    PFP LE L F DME+W
Sbjct: 795  LKDCAHCTSLPALGNLHALKELYIIGMKEVCCIDGEFCGNACLRPFPSLERLYFMDMEKW 854

Query: 122  EDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPA 181
            E+W    +++  + F  L++L +++C KL G  PE+LP+L+ + +++CE+LL +I+ LP 
Sbjct: 855  ENWFLSDNNEQNDMFSSLQQLFIVKCPKLLGKLPENLPSLKHVIVKECEQLLVTISSLPV 914

Query: 182  LCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQ 241
            L KL+I GCK +V               C +  N              L  + ++ + E 
Sbjct: 915  LYKLEIEGCKGLVLN-------------CANEFNS-------------LNSMSVSRILEF 948

Query: 242  TYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKG 301
            T++ +    L+Q   +++ L I SC   ++++ +   ++                     
Sbjct: 949  TFLME---RLVQAFKTVEELKIVSCALDETVLNDLWVNE--------------------- 984

Query: 302  LVKLPQSSLSLSS-LREIEIYKCSSLVSFPEVALPSK--LKKIQFRECDALKLLPEAWMS 358
             V L ++   LSS LR IEI  C+ + S P+V + +   L+++    CD           
Sbjct: 985  -VWLEKNPHGLSSILRLIEIRNCNIMKSIPKVLMVNSHFLERLYICHCD----------- 1032

Query: 359  DTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSS------ 412
                           S+ ++   QLP SLK L I NC N+R L ++ G  +SSS      
Sbjct: 1033 ---------------SIVFVTMDQLPHSLKSLEISNCKNLRCL-LDNGTCTSSSIIMHDD 1076

Query: 413  -RRYTSSLLEHL---HIESCPSLTRIFSKNELPATLESLEV------------GNLPPSL 456
              ++ S+++ HL   +I  CPSLT I    ELP +++ L +            G LP S+
Sbjct: 1077 NVQHGSTIISHLEYVYIGWCPSLTCISRSGELPESVKHLFIWNCSELSCLSMKGQLPKSI 1136

Query: 457  KSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLE 516
            + L +  C KLESIA RL  NTSLE I I NCENLK LP GLH L  L+EI I  C NL 
Sbjct: 1137 ERLEIQSCPKLESIANRLHRNTSLESIQIWNCENLKSLPEGLHFLVNLKEIKIIGCPNLV 1196

Query: 517  SFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLH 576
            SFPE GL  + L+ L+I+ C++L ALP  ++NL SL++L IG    +    E   P NL 
Sbjct: 1197 SFPEEGLPASSLSELSIMSCEKLVALPNSMYNLDSLKELEIGYCPSIQYFPEINFPDNLT 1256

Query: 577  SLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPAS 636
            SLWI D+    ++M     G ++ S LR LTII  +  M   P E    +LGT   LP++
Sbjct: 1257 SLWINDH-NACEAMF--NWGLYKLSFLRDLTIIGGNLFM---PLE----KLGTM--LPST 1304

Query: 637  LTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLI 695
            LTSL +  FP+LE LSS     L +L+ L + +CPKL   PEKGLPSSLL+L+I  CP +
Sbjct: 1305 LTSLTVQGFPHLENLSSEGFHKLTSLSKLSIYNCPKLLCLPEKGLPSSLLELYIQDCPFL 1364

Query: 696  EEKCRKDGGQYWDLLTHIPYARIAGKIFY 724
            +E+CRKD G+ W  +  +PY  I GK  Y
Sbjct: 1365 KEQCRKDKGRDWLKIADVPYVEIDGKFIY 1393

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 285/732 (38%), Positives = 399/732 (54%), Gaps = 64/732 (8%)

Query: 1    MLQWTRSADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVIL 60
            +++W  S++ + S++ ET+  VL+ML+P+  LK+  +  YGGTKFPTW+GD SFSNLV+L
Sbjct: 735  VMEW--SSNLNESQDEETQLEVLNMLQPNVKLKELTVKCYGGTKFPTWIGDPSFSNLVLL 792

Query: 61   KFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEE 120
            +FE+C  C + P VGQLP LK L + GM+ VK +G EFYG   S PF  LETL FEDM  
Sbjct: 793  RFENCDNCNSLPPVGQLPFLKDLLIKGMAGVKSVGREFYGESCSRPFQSLETLHFEDMPR 852

Query: 121  WEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLP 180
            W +WIP G +   E F  L +L +IRC  L    P+HLP+L+ L I  C  ++ S++ LP
Sbjct: 853  WVNWIPLGVN---EAFACLHKLSIIRCHNLVRKLPDHLPSLKKLVIHGCWNMVVSVSNLP 909

Query: 181  ALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKE 240
             LC L I GCK+V   SS    GS  S+     S     T  L   + K+E L+I D ++
Sbjct: 910  MLCVLVIEGCKRVECESSVG-FGSPYSMAFSKISEFGNATAGLMHGVSKVEYLKIVDSEK 968

Query: 241  QTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCK 300
             T +W+   E L  +  L+ L+I+ CP L S  A                L+ ++++ C 
Sbjct: 969  LTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPAS----------GFPSMLKVIQIKSCS 1018

Query: 301  GLVK-LPQSSLSL---SSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAW 356
            GL   LP+ +L     + L  + + +C S+ S     LP+ LKK++   C  L+ + +  
Sbjct: 1019 GLKSLLPEGTLHSRENACLERLCVVRCDSMKSIARGQLPTTLKKLEISHCMNLQCVLDEG 1078

Query: 357  MSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYT 416
               ++SS          S T+         L+ L I +C ++ TLT        SS +  
Sbjct: 1079 EGSSSSSGMHDEDINNRSKTH---------LQYLDIKSCPSLTTLT--------SSGKLP 1121

Query: 417  SSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDN 476
            ++ L HL +  CP L  + S  +LPA L+ LE+ ++            SKL+ IAERL  
Sbjct: 1122 AT-LTHLLLRECPKLMCLSSTGKLPAALQYLEIQSI------------SKLQKIAERLHQ 1168

Query: 477  NTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDC 536
            NTSLE I I NC  LK LP  LHNL +L++  I  C +  SFP  G L + L  L I +C
Sbjct: 1169 NTSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFWCQSFSSFPAAG-LPSNLRVLGIKNC 1227

Query: 537  KRLEALPKGLHNLTSLQQLTIG-KGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGR 595
            K L+ALP G+ NLTSLQ+L I  +   LPS +E GLPTNL  L + D ++ +K M E   
Sbjct: 1228 KNLKALPNGMRNLTSLQKLDISHRLDSLPSPQE-GLPTNLIELNMHD-LKFYKPMFE--W 1283

Query: 596  GFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSI 655
            G  + +SL +L+I     D+ S+P E E+   G  + LP SL+ L IS F NLE LS   
Sbjct: 1284 GLQQPTSLIKLSIHGECLDVDSYPGEREN---GVMMLLPNSLSILCISYFQNLECLSPK- 1339

Query: 656  VDLQNLTSLYLL---DCPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTH 712
               QNLTSL  L   +C KL   P++GLP SL QL I  CPL+ + C  + GQ W  + H
Sbjct: 1340 -GFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQHCNNEKGQEWSKIAH 1398

Query: 713  IPYARIAGKIFY 724
            IP   I  K  +
Sbjct: 1399 IPCVLIDNKFIH 1410

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45826061|gb|AAS77675.1| resistance protein [Quercus suber]

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 282/720 (39%), Positives = 393/720 (54%), Gaps = 64/720 (8%)

Query: 1   MLQWTRSADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVIL 60
           +++W  S++ + S + ET+  VL+ML+P+  LK+  +  YGGTKFPTW+GD SFSNLV+L
Sbjct: 76  VMEW--SSNLNESEDEETQLEVLNMLQPNVKLKELTVKCYGGTKFPTWIGDPSFSNLVLL 133

Query: 61  KFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEE 120
           +FE+C  C + P VGQLP LK L + GM+ VK +G EFYG   S PF  LETL FE+M  
Sbjct: 134 RFENCDKCNSLPPVGQLPFLKDLLIKGMAGVKSVGREFYGESCSRPFQSLETLHFENMPR 193

Query: 121 WEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLP 180
           WE WIP G S   E F  LR+L +IRC  L    P+HLP+L+ L I  C  L+ S++ LP
Sbjct: 194 WEKWIPLGVS---EAFACLRKLSIIRCHNLVRKLPDHLPSLKKLVIHGCWNLVVSVSNLP 250

Query: 181 ALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKE 240
            LC L I G K+V   SS    GS  S+V    S    +T  L   + K+E L+I D ++
Sbjct: 251 MLCVLAIEGYKRVECESSVG-FGSPYSMVFSKISEFGHVTAGLMHGVSKVEYLKIVDSEK 309

Query: 241 QTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCK 300
            T +W+   E L  +  L+ L+I+ CP L S  A                L+ ++++ C 
Sbjct: 310 LTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPAS----------GFPSMLKVIQIKSCS 359

Query: 301 GLVK-LPQSSLSL---SSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAW 356
           GL   LP+ +L     + L  + + +C S+ S     LP+ LK+++   C  L+   +  
Sbjct: 360 GLKSLLPEGTLHSRENACLVRLCVVRCDSMKSIARGQLPTTLKRLEISHCMNLQCALDEG 419

Query: 357 MSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYT 416
              ++SS+         S T+         L+ L I +C ++ TLT        SS +  
Sbjct: 420 EGSSSSSVMHDEDINNRSKTH---------LQYLDIKSCPSLTTLT--------SSGKLP 462

Query: 417 SSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDN 476
           ++ L HL +  CP L  + S  +LPA L+ LE+ ++P            KL+ IAERL  
Sbjct: 463 AT-LTHLLLRECPKLMCLSSTGKLPAALQYLEIQSIP------------KLQKIAERLHQ 509

Query: 477 NTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDC 536
           NT LE I I NC  LK LP  LHNL +L++  I  C +  SFP  GL  +    L I +C
Sbjct: 510 NTFLECIKIWNCHGLKSLPEDLHNLSKLRQFQIVWCTSFSSFPAAGLP-SNPRVLGIKNC 568

Query: 537 KRLEALPKGLHNLTSLQQLTI-GKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGR 595
           K L+ALP G+ NLTSLQ+L I  +   LPS +E GLPTNL  L + D ++ +K M E   
Sbjct: 569 KNLKALPNGMRNLTSLQKLDISNRLDSLPSPQE-GLPTNLIELNMID-LKFYKPMFE--W 624

Query: 596 GFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSI 655
           G  + +SL +L+I     D+ SFP E E+   G  + LP SL+ L IS F NLE LS   
Sbjct: 625 GLQQLTSLIKLSIHGECLDVDSFPGEREN---GAMMLLPNSLSILCISYFQNLECLSPK- 680

Query: 656 VDLQNLTSLYLL---DCPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTH 712
              QNLTSL  L   +C KL   P++GLP SL QL I  CPL+ + C  + GQ W  + H
Sbjct: 681 -GFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQHCNNEKGQEWSKIAH 739

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 284/730 (38%), Positives = 389/730 (53%), Gaps = 76/730 (10%)

Query: 1    MLQWTRSADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVIL 60
            +++W+ +    S  E   E  VL  L+P+ NLK+  I  YGG  FP W+GD SFS +V L
Sbjct: 744  LMEWSSNMFDDSQNET-IELNVLHFLQPNTNLKKLTIQSYGGLTFPYWIGDPSFSKMVCL 802

Query: 61   KFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDS--STPFPCLETLRFEDM 118
            +   C  CT  PS+G+L SLK L V GM  VK +G EFYG  S    PFP LE LRFEDM
Sbjct: 803  ELNYCRKCTLLPSLGRLSSLKKLCVKGMQGVKSVGIEFYGEPSLCVKPFPSLEFLRFEDM 862

Query: 119  EEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITC 178
             EWE+W         E +P+LREL +  C KL    P HLP+L  L I  C +L+A +  
Sbjct: 863  PEWEEWC------SSESYPRLRELEIHHCPKLIQKLPSHLPSLVKLDIIDCPKLVAPLPS 916

Query: 179  LPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDM 238
            LP L  L +  C + + RS  D L S  ++   + SN  FL   L   L  LE LEI + 
Sbjct: 917  LPFLRDLIVAECNEAMLRSGGD-LTSLITLRLENISNLTFLNEGLVRFLGALEVLEICNC 975

Query: 239  KEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRY 298
             E  ++ +S     +++  ++ L I  CPKL  L+AE++         L C LEYL +  
Sbjct: 976  SELKFLLQS-GVGFENLSCIRHLVIVMCPKL-VLLAEDQP--------LPCNLEYLEINK 1025

Query: 299  CKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMS 358
            C  L KLP    SL+SLRE+ I KC  L S  E+  P  L  ++  +C+ L+ LP+  M 
Sbjct: 1026 CASLEKLPIGLQSLTSLRELSIQKCPKLCSLAEMDFPPMLISLELYDCEGLESLPDGMMI 1085

Query: 359  DTNSS----LEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRR 414
            +  +     LE L I  C SL      +LP  LK L I++C  +++L   EG+       
Sbjct: 1086 NGENRNFCLLECLKIVHCPSLICFPRGELPSKLKELEIIDCAKLQSLP--EGLILGDHTC 1143

Query: 415  YTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERL 474
            +    LE L I  CP L+  F +  LP+T++ LE+ N            C +LESI+  L
Sbjct: 1144 H----LEFLRIHRCPLLSS-FPRGLLPSTMKRLEIRN------------CKQLESIS-LL 1185

Query: 475  DNNTSLEYINISNCENLKILPSG-LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533
             ++T+LEY+ I   + LKI  SG LH+L+ L E+ I  C  LESFPE G     L  L I
Sbjct: 1186 SHSTTLEYLRI---DRLKINFSGCLHSLKHLIELHIYSCSGLESFPERGFSSPNLKMLHI 1242

Query: 534  LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIER 593
             DCK L++LP  + + TSL+ L I     L S  E+GL  NL S WI +   +   + + 
Sbjct: 1243 DDCKNLKSLPLQMQSFTSLRDLRIYDCPNLVSFAEEGLSLNLTSFWIRNCKNLKMPLYQ- 1301

Query: 594  GRGFHRFSSLRRLTIIN----CDDDMVSFPPEPEDVRLGTTLP-LPASLTSLWISNFPNL 648
              G H  +SL+   I N    CD D               +LP LP +LT L IS F NL
Sbjct: 1302 -WGLHGLTSLQTFVINNVAPFCDHD---------------SLPLLPRTLTYLSISKFHNL 1345

Query: 649  ERLSSSIVDLQNLTSLYLLD---CPKLRYF-PEKGLPSSLLQLHIYRCPLIEEKCRKDGG 704
            E LSS  + LQNLTSL +L+   CPKL+ F P++GL ++L  L I  CP+IE +CRK+ G
Sbjct: 1346 ESLSS--MGLQNLTSLEILEIYSCPKLQTFLPKEGLSATLSNLRIKFCPIIEARCRKNKG 1403

Query: 705  QYWDLLTHIP 714
            + W +++HIP
Sbjct: 1404 EDWPMISHIP 1413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495024|ref|XP_002267933.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 257/690 (37%), Positives = 362/690 (52%), Gaps = 52/690 (7%)

Query: 7    SADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCG 66
            S D   SR    E  VL++L+P +NLK+  +  YGG KFP+W+G+ SFS +  L  ++CG
Sbjct: 749  SGDFDDSRNELNEMLVLELLQPQRNLKKLTVEFYGGPKFPSWIGNPSFSKMESLTLKNCG 808

Query: 67   MCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDS-STPFPCLETLRFEDMEEWEDWI 125
             CT+ P +G+L  LK L + GM KVK +G EF+G  S   PFPCLE+LRFEDM EWEDW 
Sbjct: 809  KCTSLPCLGRLSLLKALRIQGMCKVKTIGDEFFGEVSLFQPFPCLESLRFEDMPEWEDWC 868

Query: 126  PHGSSQGVEG-FPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCK 184
                 +  EG F  LREL +  C KL G+ P  LP+L  L I +C +L A++  L  +C 
Sbjct: 869  FSDMVEECEGLFSCLRELRIRECPKLTGSLPNCLPSLAELEIFECPKLKAALPRLAYVCS 928

Query: 185  LKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYI 244
            L +  C +VV R+  D L S  ++     S    L       L  L++L I    E T +
Sbjct: 929  LNVVECNEVVLRNGVD-LSSLTTLNIQRISRLTCLREGFTQLLAALQKLVIRGCGEMTSL 987

Query: 245  WKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK 304
            W++    L+ +  L+ + I  C  L SL  EE++        L C L++L++  C  L +
Sbjct: 988  WENRFG-LECLRGLESIDIWQCHGLVSL--EEQR--------LPCNLKHLKIENCANLQR 1036

Query: 305  LPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSL 364
            LP     L+ L E+ +  C  L SFPE+ LP  L+ +  ++C+ LKLLP  + S     L
Sbjct: 1037 LPNGLQRLTCLEELSLQSCPKLESFPEMGLPPMLRSLVLQKCNTLKLLPHNYNS---GFL 1093

Query: 365  EILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSS-LLEHL 423
            E L I  C  L      +LP SLK+L I +C N++TL   EG+   +S    +S  LE L
Sbjct: 1094 EYLEIEHCPCLISFPEGELPASLKQLKIKDCANLQTLP--EGMTHHNSMVSNNSCCLEVL 1151

Query: 424  HIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAER-LDNNTSLEY 482
             I  C SL              SL  G LP +LK L ++ C + + I+E+ L +NT+LE+
Sbjct: 1152 EIRKCSSLP-------------SLPTGELPSTLKRLEIWDCRQFQPISEKMLHSNTALEH 1198

Query: 483  INISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEAL 542
            ++ISN  N+KILP  LH+L  L    I  C  L SFPE GL    L  L I +C+ L++L
Sbjct: 1199 LSISNYPNMKILPGFLHSLTYLY---IYGCQGLVSFPERGLPTPNLRDLYINNCENLKSL 1255

Query: 543  PKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSS 602
            P  + NL SLQ+L I     L S  E GL  NL SL I D + +   + E   G HR +S
Sbjct: 1256 PHQMQNLLSLQELNIRNCQGLESFPECGLAPNLTSLSIRDCVNLKVPLSE--WGLHRLTS 1313

Query: 603  LRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLT 662
            L  L I      + S   +           LP +L+ L+IS   +L  L  ++ +L +L 
Sbjct: 1314 LSSLYISGVCPSLASLSDD--------ECLLPTTLSKLFISKLDSLVCL--ALKNLSSLE 1363

Query: 663  SLYLLDCPKLRYFPEKGLPSSLLQLHIYRC 692
             + +  CPKLR     GLP +L +L I  C
Sbjct: 1364 RISIYRCPKLRSI---GLPETLSRLEIRDC 1390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059584|ref|XP_002299919.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847177|gb|EEE84724.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 263/728 (36%), Positives = 364/728 (50%), Gaps = 68/728 (9%)

Query: 2    LQWTRSADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILK 61
            L+W++S      R+ +    VLD L+PH NLK+  IS YGGT+FP+W+G  SFS +V LK
Sbjct: 742  LEWSKSDIKDEDRQHQML--VLDSLQPHTNLKELKISFYGGTEFPSWVGHPSFSKIVHLK 799

Query: 62   FEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSST-PFPCLETLRFEDMEE 120
               C  CT  P +G+LP L+ L + G+  V+ +G EFYG+ SS  PFP L+TL FEDM+E
Sbjct: 800  LSCCRKCTVLPPLGRLPLLRDLCIQGLDAVETVGHEFYGDCSSVKPFPSLKTLTFEDMQE 859

Query: 121  WEDWIPHG-SSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCL 179
            W+ W   G   +  E FP L EL +  C KL G FP  LP+   + I KC  L+ S   L
Sbjct: 860  WKSWSAVGVDGEAEEQFPSLSELTLWNCPKLLGRFPSCLPSCVKITIAKCPMLVDSDEKL 919

Query: 180  PALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMK 239
            P L +LK+  C +V  +    H  S  ++  G  S   +L G L   L  L+ L I+D  
Sbjct: 920  PVLGELKLEECDEVKPKCMF-HNSSLITLKLGSMSRLTYLKGQLLQSLGALKVLMISDFP 978

Query: 240  EQTYIWKSHNELLQ----DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLR 295
            + T +W+    L         SL  + + S  K                          +
Sbjct: 979  KLTSLWQKGTGLENFEHPQFVSLTEIGMPSTHKSS------------------------K 1014

Query: 296  LRYCKGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPE 354
            L  C  L  LP  ++  L SL ++ I  C +LVS PE  L S L+ +  R+C AL+ LP+
Sbjct: 1015 LSGCDKLDLLPIHTVHMLLSLEDLCIESCPNLVSIPEAGLLSSLRHLVLRDCKALRSLPD 1074

Query: 355  AWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRR 414
                 +N  LE L I  C SL    G  LP +LK L I  C  +++L   E +  + +  
Sbjct: 1075 GM---SNCPLEDLEIEECPSLECFPGRMLPATLKGLKIRYCTELKSLP--EDLMHNKNGP 1129

Query: 415  YTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAER- 473
             T    EHL I  CPSL             +S   G LP  LK+L ++ CS+L+ ++E  
Sbjct: 1130 GTLCHFEHLEIIGCPSL-------------KSFPDGKLPTRLKTLKIWDCSQLKPLSEMM 1176

Query: 474  LDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533
            L ++ SLEY+ IS+CE L   P  L + + L E+ +  C  L+ FP  G   A L  LTI
Sbjct: 1177 LHDDMSLEYLAISDCEALSSFPECLSSFKHLSELNLSNCSALKLFPGVGFPPANLRTLTI 1236

Query: 534  LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSL--WIEDNMEIWKSMI 591
             +CK L++LP  +  LTSLQ+LTI     L S     +P +L SL  W  DN++   S  
Sbjct: 1237 YNCKNLKSLPNEMRKLTSLQELTICSCPALKSFPNGDMPPHLTSLEIWDCDNLDGCLS-- 1294

Query: 592  ERGRGFHRFSSLRRLTIIN-CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLER 650
                     + LR  +I   C    VSFP E           LP +LTS+WI   PNLE 
Sbjct: 1295 --EWNLQSLTCLRDFSIAGGCFSHTVSFPDE--------KCLLPTNLTSVWIGRLPNLES 1344

Query: 651  LSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLL 710
            LS  +  L  L  L ++DCPKL+  P   LP +L +  I  CPL+ ++C K  G YW L+
Sbjct: 1345 LSMQLQSLAYLEELEIVDCPKLKSLPRGCLPHALGRFSIRDCPLMTQRCSKLKGVYWPLI 1404

Query: 711  THIPYARI 718
            +HIP   I
Sbjct: 1405 SHIPCVEI 1412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495026|ref|XP_003634900.1| PREDICTED: uncharacterized protein LOC100854556 [Vitis vinifera]

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 249/670 (37%), Positives = 354/670 (52%), Gaps = 47/670 (7%)

Query: 7    SADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCG 66
            S D   SR    E  VL++L+P +NLK+  +  YGG KFP+W+G+ SFS +  L  ++CG
Sbjct: 748  SGDFDDSRNELNEMLVLELLQPQRNLKKLTVEFYGGPKFPSWIGNPSFSKMESLTLKNCG 807

Query: 67   MCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDS-STPFPCLETLRFEDMEEWEDWI 125
             CT+ P +G+L  LK L + GM KVK +G EF+G  S   PFPCLE+LRFEDM EWEDW 
Sbjct: 808  KCTSLPCLGRLSLLKALRIQGMCKVKTIGDEFFGEVSLFKPFPCLESLRFEDMPEWEDWC 867

Query: 126  PHGSSQGVEG-FPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCK 184
                 +  EG F  LREL +  C KL G+ P  LP+L  L I +C +L A++  L  +C 
Sbjct: 868  FSDMVEECEGLFSCLRELRIRECPKLTGSLPNCLPSLAELEIFECPKLKAALPRLAYVCS 927

Query: 185  LKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYI 244
            L +  C +VV R+  D L S  ++     S    L       L  L++L I    E T +
Sbjct: 928  LNVVECNEVVLRNGVD-LSSLTTLNIQRISRLTCLREGFTQLLAALQKLVIRGCGEMTSL 986

Query: 245  WKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK 304
            W++    L+ +  L+ + I  C  L+SL  EE++        L C L++L++  C  L +
Sbjct: 987  WENRFG-LECLRGLESIDIWQCHGLESL--EEQR--------LPCNLKHLKIENCANLQR 1035

Query: 305  LPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSL 364
            LP    SL+ L E+ +  C  L SFPE+ LP  L+ +  ++C+ LKLLP  + S     L
Sbjct: 1036 LPNGLQSLTCLEELSLQSCPKLESFPEMGLPPMLRSLVLQKCNTLKLLPHNYNS---GFL 1092

Query: 365  EILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLH 424
            E L I  C  L      +LP SLK+L I +C N++TL  E  +  +S     S  LE L 
Sbjct: 1093 EYLEIEHCPCLISFPEGELPASLKQLKIKDCANLQTLP-EGMMHHNSMVSNNSCCLEVLE 1151

Query: 425  IESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAER-LDNNTSLEYI 483
            I  C SL              SL  G LP +LK L ++ C + + I+E+ L +NT+LE++
Sbjct: 1152 IRKCSSLP-------------SLPTGELPSTLKRLEIWDCRQFQPISEKMLHSNTALEHL 1198

Query: 484  NISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALP 543
            +ISN  N+KILP  LH+L  L    +  C  L SFPE GL    L  L I +C+ L++LP
Sbjct: 1199 SISNYPNMKILPGFLHSLTYLY---MYGCQGLVSFPERGLPTPNLRDLYINNCENLKSLP 1255

Query: 544  KGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSL 603
              + NL SLQ+L I     L S  E GL  NL SL I D + +   + E   G HR +SL
Sbjct: 1256 HQMQNLLSLQELNIRNCQGLESFPECGLAPNLTSLSIRDCVNLKVPLSE--WGLHRLTSL 1313

Query: 604  RRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTS 663
              L I      + S   +           LP++L+ L+IS   +L  L  ++ +L +L  
Sbjct: 1314 SSLYISGVCPSLASLSDD--------DCLLPSTLSKLFISKLDSLACL--ALKNLSSLER 1363

Query: 664  LYLLDCPKLR 673
            + +  CPKLR
Sbjct: 1364 ISIYRCPKLR 1373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770261|emb|CAN67336.1| hypothetical protein VITISV_004414 [Vitis vinifera]

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 259/725 (35%), Positives = 359/725 (49%), Gaps = 81/725 (11%)

Query: 2    LQWTRSADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILK 61
            ++W  S D   +R  + E  VL+ L+P +NL++  I+ YGG+KFP+WLGD SFS +V L 
Sbjct: 714  MEW--SDDCWDARNDKRESRVLESLQPRENLRRLTIAFYGGSKFPSWLGDPSFSVMVELT 771

Query: 62   FEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEW 121
              DC  C   P++G L  LK L + GMS+VK +G+EFYG +S  PF  L+ LRFEDM EW
Sbjct: 772  LRDCKKCMLLPNLGGLSVLKVLCIEGMSQVKSIGAEFYG-ESMNPFASLKVLRFEDMPEW 830

Query: 122  EDWIPHGS--SQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCL 179
            E+W  H +   + V  FP L +  + +C KL G  P+ L +L  L + KC  L+  +  L
Sbjct: 831  ENW-SHSNFIKEDVGTFPHLEKFFMRKCPKLIGELPKCLQSLVELVVLKCPGLMCGLPKL 889

Query: 180  PALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMK 239
             +L +L    C +VV R +   L S  +V     S    L       L  L+EL I D  
Sbjct: 890  ASLRELNFTECDEVVLRGAQFDLPSLVTVNLIQISRLTCLRTGFTRSLVALQELVIKDCD 949

Query: 240  EQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYC 299
              T +W+                                        L C L+ L +R C
Sbjct: 950  GLTCLWEEQ-------------------------------------WLPCNLKKLEIRDC 972

Query: 300  KGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSD 359
              L KL     +L+ L E+EI  C  L SFP+   P  L++++   C  LK LP  +   
Sbjct: 973  ANLEKLSNGLQTLTRLEELEIRSCPKLESFPDSGFPPVLRRLELFYCRGLKSLPHNY--- 1029

Query: 360  TNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSL 419
                LE+L+I     L      +LP +LK+L I +C ++ +L  E  +  +S+    +  
Sbjct: 1030 NTCPLEVLAIQCSPFLKCFPNGELPTTLKKLYIWDCQSLESLP-EGLMHHNSTSSSNTCC 1088

Query: 420  LEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLD-NNT 478
            LE L IE+C SL              S   G LP +LK L + GC+ LES++E++  N+T
Sbjct: 1089 LEELTIENCSSLN-------------SFPTGELPSTLKRLIIVGCTNLESVSEKMSPNST 1135

Query: 479  SLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKR 538
            +LEY+ +    NLK L   L +LR+L    I  CG LE FPE GL    L  L I  C+ 
Sbjct: 1136 ALEYLRLEGYPNLKSLKGCLDSLRKLD---INDCGGLECFPERGLSIPNLEFLEIEGCEN 1192

Query: 539  LEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFH 598
            L++L   + NL SL+ LTI +   L S  E+GL  NL SL I DN +  K+ I    G  
Sbjct: 1193 LKSLTHQMRNLKSLRSLTISQCPGLESFPEEGLAPNLTSLEI-DNCKNLKTPISEW-GLD 1250

Query: 599  RFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDL 658
              +SL  LTI N   +MVS   E           LP SLTSL I    +LE L S  +DL
Sbjct: 1251 TLTSLSELTIRNIFPNMVSVSDE--------ECLLPISLTSLTIKGMESLESLES--LDL 1300

Query: 659  QNLTSLYLLD---CPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTHIPY 715
              L SL  LD   CP LR      LP++L +L I+ CP ++E+  KDGG+ W  + HI  
Sbjct: 1301 DKLISLRSLDISNCPNLRSL--GLLPATLAKLDIFGCPTMKERFSKDGGECWSNVAHIRS 1358

Query: 716  ARIAG 720
             RI  
Sbjct: 1359 VRIGN 1363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487255|ref|XP_002269744.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 256/714 (35%), Positives = 362/714 (50%), Gaps = 147/714 (20%)

Query: 15   EAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSV 74
            + E +  VL+ L+PH  +K+  I  + G KFP WL D SF NLV L+  DC  C + P +
Sbjct: 739  DLEIQTKVLEKLQPHNKVKRLIIECFYGIKFPKWLEDPSFMNLVFLQLRDCKNCLSLPPL 798

Query: 75   GQLPSLKHLAVSGMSKVKRLGSEFYGND--SST---PFPCLETLRFEDMEEWEDWIPHGS 129
            GQL SLK L +  M  V+++G E YGN   SST   PF  LE LRFE+M EWE+W+    
Sbjct: 799  GQLQSLKDLCIVKMDDVRKVGVELYGNSYCSSTSIKPFGSLEILRFEEMLEWEEWV---- 854

Query: 130  SQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYG 189
             +GVE FP L+EL++ +C  L+   PEHLP L  L I KCE+L+  +   P++ +L++  
Sbjct: 855  CRGVE-FPCLKELYIKKCPNLKKDLPEHLPKLTELEISKCEQLVCCLPMAPSIRRLELKE 913

Query: 190  CKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHN 249
            C  VV RS+            G  ++  +LT                             
Sbjct: 914  CDDVVVRSA------------GSLTSLAYLT----------------------------- 932

Query: 250  ELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSS 309
              ++++C +     D   +L SLV         QLC          +  C  L ++P   
Sbjct: 933  --IRNVCKIP----DELGQLNSLV---------QLC----------VYRCPELKEIPPIL 967

Query: 310  LSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSI 369
             SL+SL+ + I  C SL SFPE+ALP  L+ ++ R C  L+ LPE  M + N++L+ L I
Sbjct: 968  HSLTSLKNLNIENCESLASFPEMALPPMLESLEIRACPTLESLPEGMMQN-NTTLQCLEI 1026

Query: 370  WVCHSLTYLAGVQLPR---SLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIE 426
            W C SL       LPR   SLKRLVI  C  +     E+              + H H  
Sbjct: 1027 WHCGSLR-----SLPRDIDSLKRLVICECKKLELALHED--------------MTHNHY- 1066

Query: 427  SCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINIS 486
                           A+L   ++ +   SL S  +   +KLE          +L++ N  
Sbjct: 1067 ---------------ASLTKFDITSCCDSLTSFPLASFTKLE----------TLDFFNCG 1101

Query: 487  NCENLKILPSGLH--NLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPK 544
            N E+L I P GLH  +L  LQ + I+ C NL SFP GGL    L RL IL+C++L++LP+
Sbjct: 1102 NLESLYI-PDGLHHVDLTSLQSLEIRNCPNLVSFPRGGLPTPNLRRLWILNCEKLKSLPQ 1160

Query: 545  GLHN-LTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSL 603
            G+H  LTSLQ L I    E+ S  E GLPTNL  L I +  ++  + +E   G      L
Sbjct: 1161 GMHTLLTSLQHLHISNCPEIDSFPEGGLPTNLSELDIRNCNKLVANQME--WGLQTLPFL 1218

Query: 604  RRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTS 663
            R LTI   +++   FP E    R      LP++LTSL I  FPNL+ L +    LQ+LTS
Sbjct: 1219 RTLTIEGYENE--RFPEE----RF-----LPSTLTSLEIRGFPNLKSLDNK--GLQHLTS 1265

Query: 664  LYLL---DCPKLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTHIP 714
            L  L   +C  L+ FP++GLPSSL  L+I  CPL+ ++C++D G+ W  ++HIP
Sbjct: 1266 LETLRIRECGNLKSFPKQGLPSSLSSLYIEECPLLNKRCQRDKGKEWPKISHIP 1319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	725
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.230	0.117	0.392	3.7e-49
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.223	0.153	0.384	2.8e-28
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.426	0.260	0.274	4.4e-17
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.442	0.162	0.254	9.2e-16
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.846	0.340	0.235	6.2e-15
TAIR|locus:2170408	1139	AT5G46270 [Arabidopsis thalian	0.366	0.233	0.262	3.9e-12
TAIR|locus:2170488	1205	AT5G46260 [Arabidopsis thalian	0.328	0.197	0.267	4.2e-12
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.553	0.309	0.240	1.2e-11
TAIR|locus:2117149	1201	AT4G19050 [Arabidopsis thalian	0.460	0.278	0.236	3.8e-11
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.431	0.257	0.261	4.1e-10

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 3.7e-49, Sum P(2) = 3.7e-49
 Identities = 69/176 (39%), Positives = 102/176 (57%)

Query:     1 MLQWTRSADG----SSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSN 56
             +L+WT    G    S +  A  +K VL ML+PH +LK FCI  Y G  FP WLGDSSF  
Sbjct:   726 ILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFG 785

Query:    57 LVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFY-GNDSS--TPFPCLETL 113
             +  +    C +C + P VGQLPSLK+L++   + ++++G +F+ G ++S   PF  L+ L
Sbjct:   786 ITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQSLQIL 845

Query:   114 RFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKC 169
             +F  M  W++WI      G+  FP L++L + RC  L+  FPE LP+   + I  C
Sbjct:   846 KFYGMPRWDEWICPELEDGI--FPCLQKLIIQRCPSLRKKFPEGLPSSTEVTISDC 899

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 2.8e-28, P = 2.8e-28
 Identities = 65/169 (38%), Positives = 105/169 (62%)

Query:     7 SADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCG 66
             S + ++    + E  V + L+PH+++++  I  Y G +FP WL D SFS +V ++  +C 
Sbjct:   742 SENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQ 801

Query:    67 MCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSST------PFPCLETLRFEDMEE 120
              CT+ PS+GQLP LK L +SGM  ++ +G +FY +D         PF  LETLRF+++ +
Sbjct:   802 YCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPD 861

Query:   121 WEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKC 169
             W++W+    ++G + FP L++L ++RC +L GT P  LP+L  L I KC
Sbjct:   862 WQEWLDVRVTRG-DLFPSLKKLFILRCPELTGTLPTFLPSLISLHIYKC 909

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.4e-17, P = 4.4e-17
 Identities = 91/332 (27%), Positives = 149/332 (44%)

Query:   291 LEYLRLRYCKGLVKLPQXXXXXXXXREIEIYKCSSLVSFPE-VALPSKLKKIQFRECDAL 349
             L+ LRL  C  LV+LP          E+++  CSSLV  P  +   + LKK+    C +L
Sbjct:   682 LQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSL 741

Query:   350 KLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILN---CDNIRTLTMEEG 406
               LP ++ + T  SL+ L++  C SL     +++P S+  +V L     D   +L     
Sbjct:   742 VKLPSSFGNVT--SLKELNLSGCSSL-----LEIPSSIGNIVNLKKVYADGCSSLVQLPS 794

Query:   407 IQXXXXXXXXXXLLEHLHIESCPS----LTRIFSKNELPATLESLE---VGNLPPSLKSL 459
                         LL    +  CPS    LTR+   N L   L  ++   +GN+  +L+SL
Sbjct:   795 SIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLN-LSGCLSLVKLPSIGNVI-NLQSL 852

Query:   460 SVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFP 519
              +  CS L  +   ++N T+L+ + +  C NL  LPS + N+  LQ + +  C +L+  P
Sbjct:   853 YLSDCSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELP 912

Query:   520 EGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLW 579
                     L  L+++ C  L  LP  +  +++L  L +     L  L     P    SL 
Sbjct:   913 SLVENAINLQSLSLMKCSSLVELPSSIWRISNLSYLDVSNCSSLLELNLVSHPVVPDSL- 971

Query:   580 IEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611
             I D  +  +S+++R   F +   +  L   NC
Sbjct:   972 ILDAGDC-ESLVQRLDCFFQNPKIV-LNFANC 1001

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
 Identities = 90/353 (25%), Positives = 151/353 (42%)

Query:   282 QQLCELSC--RLEYLRLRYCKGLVKLPQXXXXXXXXREIEIYKCSSLVSFPEVALP-SKL 338
             ++L +LS    LE L L+YC  LVK+P         + + ++ C+S++  P      + L
Sbjct:   678 KELPDLSTATNLEELILKYCVSLVKVPSCVGKLGKLQVLCLHGCTSILELPSFTKNVTGL 737

Query:   339 KKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNI 398
             + +   EC +L  LP +  +  N  L+ L +     L     +    +LK+ ++  C ++
Sbjct:   738 QSLDLNECSSLVELPSSIGNAIN--LQNLDLGCLRLLKLPLSIVKFTNLKKFILNGCSSL 795

Query:   399 RTLTMEEGIQXXXXXXXXXXLLEHLHIESCPSLTRIFSKNELPATLESLEVGN------L 452
               L                  L++L + +C SL  + S       L++L++ N      L
Sbjct:   796 VELPF----------MGNATNLQNLDLGNCSSLVELPSSIGNAINLQNLDLSNCSSLVKL 845

Query:   453 PP------SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQE 506
             P       +L+ L +  CS L  I   + + T+L  +++S C +L  LPS + N+ +LQ 
Sbjct:   846 PSFIGNATNLEILDLRKCSSLVEIPTSIGHVTNLWRLDLSGCSSLVELPSSVGNISELQV 905

Query:   507 ITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSL 566
             + +  C NL   P        L RL +  C  L  LP  + N+T+LQ+L +     L  L
Sbjct:   906 LNLHNCSNLVKLPSSFGHATNLWRLDLSGCSSLVELPSSIGNITNLQELNLCNCSNLVKL 965

Query:   567 EEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFP 619
                    NLH L+        K  +E         SL RL + +C     SFP
Sbjct:   966 PSS--IGNLHLLFTLSLARCQK--LEALPSNINLKSLERLDLTDCSQ-FKSFP 1013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 178 (67.7 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
 Identities = 160/678 (23%), Positives = 259/678 (38%)

Query:    55 SNLVILKFEDCGMCTTW--PSVGQLPSLKHLAVSGMSKVKRLGS--EFYGNDSSTPFP-C 109
             SNLV L+   C         S   L SL  L + G  ++ R       +G D     P  
Sbjct:  1141 SNLVSLQLHSCTALEELIIQSCESLSSLDGLQLLGNLRLLRAHRCLSGHGEDGRCILPQS 1200

Query:   110 LETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKC 169
             LE L   +  + E   P  S         LR+LHV+  S L         ALE L I+ C
Sbjct:  1201 LEELYIHEYSQ-ETLQPCFSGN----LTLLRKLHVLGNSNLVSLQLHSCTALEELIIQSC 1255

Query:   170 EELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGXXXXXXXX 229
             E L +S+  L  L  L++    + +    + H G     +   +  ++++          
Sbjct:  1256 ESL-SSLDGLQLLGNLRLLRAHRCL----SGH-GEDGRCILPQSLEELYIHEYSQETLQP 1309

Query:   230 XXXXXINDMKEQTYIWKSHNELLQ-DICS-LKRLTIDSCPKLQSLVAEEEKDQQQQL--- 284
                  +  +++   +  S+   LQ   C+ L+ L I SC  L SL   +     + L   
Sbjct:  1310 CFSGNLTLLRKLHVLGNSNFVSLQLHSCTALEELIIQSCESLSSLDGLQLLGNLRLLQAH 1369

Query:   285 -----------CELSCRLEYLRLR-YCKGLVKLPQXXXXXXXXREIEIYKCSSLVSFPEV 332
                        C L   LE L +  Y +  ++ P         R++ +   S+LVS  ++
Sbjct:  1370 RCLSGHGEDGRCILPQSLEELYIHEYSQETLQ-PCFSGNLTLLRKLHVLGNSNLVSL-QL 1427

Query:   333 ALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAG-VQLPRSLKRLV 391
                + L+++  + C++L  L    +     +L +L    C S     G   LP+SL+ L 
Sbjct:  1428 HSCTALEELIIQSCESLSSLDGLQLL---GNLRLLQAHRCLSGHGEDGRCILPQSLEELY 1484

Query:   392 I--LNCDNIRTLTMEEGIQXXXXXXXXXXLLEHLHIESCPSLTRIFSKNELPATLESLEV 449
             I   + + ++                    L  L + SC SL  +  K +   +L SL+ 
Sbjct:  1485 IHEYSQETLQPCFSGNLTLLRKLHVLGNSNLVSLQLHSCTSLEEL--KIQSCESLSSLDG 1542

Query:   450 GNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITI 509
               L  +L+ L  + C        R     SLE + IS      + P  L NL  L+++ +
Sbjct:  1543 LQLLGNLRLLQAHRCLSGHGEDGRCILPQSLEELFISEYSLETLQPCFLTNLTCLKQLEV 1602

Query:   510 QRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELP----S 565
                 +L+S       C  L  L I  C  L  L +GL  L +L+ + + +   LP    S
Sbjct:  1603 SGTTSLKSLELQS--CTALEHLKIQGCASLATL-EGLQFLHALRHMKVFRCPGLPPYLGS 1659

Query:   566 LEEDG--LPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPE 623
               E G  L   L  L I+D   +  S  +     H  +SL+RL +  C  ++     E E
Sbjct:  1660 SSEQGYELCPRLERLDIDDPSILTTSFCK-----H-LTSLQRLELNYCGSEVARLTDEQE 1713

Query:   624 DVRXXXXXXXXXXXXXXWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSS 683
               R              +  N   L  L + +  L +L  L +  C  +   PEKGLP S
Sbjct:  1714 --RALQLLTSLQELRFKYCYN---LIDLPAGLHSLPSLKRLEIRSCRSIARLPEKGLPPS 1768

Query:   684 LLQLHIYRCPL-IEEKCR 700
               +L I  C   + ++CR
Sbjct:  1769 FEELDIIACSNELAQQCR 1786

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2170408 AT5G46270 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 76/290 (26%), Positives = 135/290 (46%)

Query:   302 LVKLPQXXXXXXXXREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTN 361
             L KL +        +E+++   S+L   P++++P+ L+ ++   C +L  LP + + + N
Sbjct:   627 LHKLWEGVASLTCLKEMDMVGSSNLKEIPDLSMPTNLEILKLGFCKSLVELPSS-IRNLN 685

Query:   362 SSLEILSIWVCHSLTYL-AGVQLPRSLKRLVILNCDNIRTLTMEEGIQXXXXXXXXXXLL 420
               L+ L +  CHSL  L  G  L +SL  L    C  +RT   E              + 
Sbjct:   686 KLLK-LDMEFCHSLEILPTGFNL-KSLDHLNFRYCSELRTFP-EFSTNISVLMLFGTNIE 742

Query:   421 EHLHIESCPSLTRIFSKNELPAT----LESLE--VGNLPPSLKSLSVYGCSKLESIAERL 474
             E  ++E+   L+   SK E        ++ L   +  L P+LKSL +     L  +    
Sbjct:   743 EFPNLENLVELS--LSKEESDGKQWDGVKPLTPFLEMLSPTLKSLKLENIPSLVELPSSF 800

Query:   475 DNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL 534
              N   L+ ++I+ C NL+ LP+G+ NL+ L  +  + C  L SFPE        T +++L
Sbjct:   801 QNLNQLKELSITYCRNLETLPTGI-NLKSLNYLCFKGCSQLRSFPEIS------TNISVL 853

Query:   535 DCKR--LEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIED 582
             + +   +E +P  + N  +L +LT+    +L  L  + +P  + +LW  D
Sbjct:   854 NLEETGIEEVPWQIENFFNLTKLTMRSCSKLKCLSLN-IP-KMKTLWDVD 901

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170488 AT5G46260 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 69/258 (26%), Positives = 126/258 (48%)

Query:   316 REIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSL 375
             +E+++    +L   P++++ + L+ + F  C +L  LP +++ + N  L+ L++  C+SL
Sbjct:   631 KEMDLDGSVNLKEIPDLSMATNLETLNFENCKSLVELP-SFIQNLNKLLK-LNMAFCNSL 688

Query:   376 TYL-AGVQLPRSLKRLVILNCDNIRTLT-MEEGIQXXXXXXXXXXLL-EHLHIESCPSLT 432
               L  G  L +SL R+    C  +RT       I            L  +LH+E+   L 
Sbjct:   689 ETLPTGFNL-KSLNRIDFTKCSKLRTFPDFSTNISDLYLTGTNIEELPSNLHLENLIDL- 746

Query:   433 RIFSKNELPA-----TLESLE--VGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINI 485
             RI SK E+        ++ L+  +  L P+L SL +     L  +     N   LE ++I
Sbjct:   747 RI-SKKEIDGKQWEGVMKPLKPLLAMLSPTLTSLQLQNIPNLVELPCSFQNLIQLEVLDI 805

Query:   486 SNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKG 545
             +NC NL+ LP+G+ NL+ L  ++ + C  L SFPE   +   ++ L  L+   +E +P  
Sbjct:   806 TNCRNLETLPTGI-NLQSLDSLSFKGCSRLRSFPE---ISTNISSLN-LEETGIEEVPWW 860

Query:   546 LHNLTSLQQLTIGKGGEL 563
             +   ++L  L++ +   L
Sbjct:   861 IDKFSNLGLLSMDRCSRL 878

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 109/453 (24%), Positives = 187/453 (41%)

Query:   252 LQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQXXXX 311
             +Q + +LK++ +  C   + LV  E  D  +     +  LE L L YC+ LV++      
Sbjct:   621 IQPLRNLKKMDLSRC---KYLV--EVPDLSK-----ATNLEELNLSYCQSLVEVTPSIKN 670

Query:   312 XXXXREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPE-AWMSDTNSSLEILSIW 370
                     +  C  L   P   +   L+ +    C +LK  PE +W    N+    LS  
Sbjct:   671 LKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSSLKHFPEISW----NTRRLYLSST 726

Query:   371 VCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQXXXXXXXXXXLLEHLHIESCPS 430
                 L   + +     L +L + +C  +RTL    G             L+ L+++ C  
Sbjct:   727 KIEELP--SSISRLSCLVKLDMSDCQRLRTLPSYLG---------HLVSLKSLNLDGCRR 775

Query:   431 LTRIFSKNELPATLESLEVGN------LPPSLKSLSVYGCSK--LESIAERLDNNTSLEY 482
             L  +    +   +LE+LEV         P    S+ V   S+  +E I  R+ N + L  
Sbjct:   776 LENLPDTLQNLTSLETLEVSGCLNVNEFPRVSTSIEVLRISETSIEEIPARICNLSQLRS 835

Query:   483 INISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKR--LE 540
             ++IS  + L  LP  +  LR L+++ +  C  LESFP    +C  ++ L   D  R  ++
Sbjct:   836 LDISENKRLASLPVSISELRSLEKLKLSGCSVLESFPLE--ICQTMSCLRWFDLDRTSIK 893

Query:   541 ALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIER-GRGFHR 599
              LP+ + NL +L+ L   +     +       T L  L I ++    + ++        R
Sbjct:   894 ELPENIGNLVALEVLQASRTVIRRAPWSIARLTRLQVLAIGNSFFTPEGLLHSLCPPLSR 953

Query:   600 FSSLRRLTIINCDDDMVSFPPEPEDVRXXXXXXXXXXXXXXWISNFPNLERLSSSIVDLQ 659
             F  LR L++ N +  M   P    ++                 +NF   E + +SI  L 
Sbjct:   954 FDDLRALSLSNMN--MTEIPNSIGNLWNLLELDLSG-------NNF---EFIPASIKRLT 1001

Query:   660 NLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRC 692
              L  L L +C +L+  P++ LP  LL ++I+ C
Sbjct:  1002 RLNRLNLNNCQRLQALPDE-LPRGLLYIYIHSC 1033

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2117149 AT4G19050 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 3.8e-11, Sum P(3) = 3.8e-11
 Identities = 85/359 (23%), Positives = 141/359 (39%)

Query:   259 KRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQXXXXXXXXREI 318
             K +T      L  L  +      ++L  L C +    LR+C  L  LP           I
Sbjct:   513 KNMTQLQSLNLSGLAIKSSPSTIEKLSMLRCFI----LRHCSELQDLPNFIVETRKLEVI 568

Query:   319 EIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYL 378
             +I+    L S+ +     K  K + +    L+LL     S+T    +I+ + + H     
Sbjct:   569 DIHGARKLESYFDRVKDWKDYKGKNKNFAQLQLLEHLDFSET----KIIRLPIFHLKDST 624

Query:   379 AGVQLPRSLKRLVILNCDNIRTLTMEEGIQXXXXXXX--XXXLLEHLHI--ESCPSLTRI 434
                     L RL++ NC  ++ L     +             L+E L +  E    L  +
Sbjct:   625 NDFSTMPILTRLLLRNCTRLKRLPQLRPLTNLQILDACGATDLVEMLEVCLEEKKELRIL 684

Query:   435 -FSKNELPATLESL-EVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLK 492
               SK  LP   +++ +V NL      L +  CS +E +   ++  T LE  ++S C  LK
Sbjct:   685 DMSKTSLPELADTIADVVNL----NKLLLRNCSLIEELPS-IEKLTHLEVFDVSGCIKLK 739

Query:   493 ILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSL 552
              +      +  L E+ +    NL   P+     + L  L I  C +L+ LP  L  LT+L
Sbjct:   740 NINGSFGEMSYLHEVNLSET-NLSELPDKISELSNLKELIIRKCSKLKTLPN-LEKLTNL 797

Query:   553 QQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611
             +   +    EL ++E  G   NL  L   +  E   ++ E        S+L+ L + NC
Sbjct:   798 EIFDVSGCTELETIE--GSFENLSCLHKVNLSET--NLGELPNKISELSNLKELILRNC 852

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 93/355 (26%), Positives = 155/355 (43%)

Query:   282 QQLCELSC--RLEYLRLRYCKGLVKLPQXXXXXXXXREIEIYKCSSLVSFPE-VALPSKL 338
             ++L +LS    LE L L  C  LV+LP          ++E+  CSSL+  P  +     L
Sbjct:   688 KELPDLSSATNLEVLNLNGCSSLVELPFSIGNATKLLKLELSGCSSLLELPSSIGNAINL 747

Query:   339 KKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYL-AGVQLPRSLKRLVILNCDN 397
             + I F  C+ L  LP +  + TN  L+ L +  C SL  L + +    +LK+L ++ C +
Sbjct:   748 QTIDFSHCENLVELPSSIGNATN--LKELDLSCCSSLKELPSSIGNCTNLKKLHLICCSS 805

Query:   398 IRTLTMEEGIQXXXXXXXXXXLLEHLHIESCPSLTRIFSKNELPATLESLEVGN------ 451
             ++ L    G             L+ LH+  C SL ++ S       LE L +        
Sbjct:   806 LKELPSSIG---------NCTNLKELHLTCCSSLIKLPSSIGNAINLEKLILAGCESLVE 856

Query:   452 LPP------SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQ 505
             LP       +LK L++   S L  +   + N   L  + +  C+ L++LP+ + NL  L 
Sbjct:   857 LPSFIGKATNLKILNLGYLSCLVELPSFIGNLHKLSELRLRGCKKLQVLPTNI-NLEFLN 915

Query:   506 EITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPS 565
             E+ +  C  L++FP   ++   + RL +   + +E +P  L +   L+ L +        
Sbjct:   916 ELDLTDCILLKTFP---VISTNIKRLHLRGTQ-IEEVPSSLRSWPRLEDLQM-------- 963

Query:   566 LEEDGLPTNLHSLWIEDNMEIWKSMI-ERGRGFHRFSSLRRLTIINCDDDMVSFP 619
             L  + L    H L     +E+    I E     +R + LRRL +  C   +VS P
Sbjct:   964 LYSENLSEFSHVLERITVLELSDINIREMTPWLNRITRLRRLKLSGCGK-LVSLP 1017

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	725
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-13
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-07
PRK15386	426	PRK15386, PRK15386, type III secretion protein Gog	2e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 72.6 bits (178), Expect = 5e-13
 Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 37/237 (15%)

Query: 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNL 515
           L+++ + G   L+ I + L   T+LE + +S+C +L  LPS +  L +L+++ + RC NL
Sbjct: 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694

Query: 516 ESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNL 575
           E  P G  L   L RL +  C RL++ P    N++ L         +L     +  P+NL
Sbjct: 695 EILPTGINL-KSLYRLNLSGCSRLKSFPDISTNISWL---------DLDETAIEEFPSNL 744

Query: 576 HSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPA 635
               +E+  E+    ++  + + R   L  L  +                       L  
Sbjct: 745 R---LENLDELILCEMKSEKLWERVQPLTPLMTM-----------------------LSP 778

Query: 636 SLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRC 692
           SLT L++S+ P+L  L SSI +L  L  L + +C  L   P      SL  L +  C
Sbjct: 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 66.1 bits (161), Expect = 5e-11
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 38/285 (13%)

Query: 302 LVKL--PQSSL--------SLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKL 351
           LVKL    S L        SL+ LR I++    +L   P++++ + L+ ++  +C +L  
Sbjct: 613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVE 672

Query: 352 LPEAWMSDTNSSLEILSIWVCHSLTYL-AGVQLPRSLKRLVILNCD----------NIRT 400
           LP + +   N  LE L +  C +L  L  G+ L +SL RL +  C           NI  
Sbjct: 673 LPSS-IQYLNK-LEDLDMSRCENLEILPTGINL-KSLYRLNLSGCSRLKSFPDISTNISW 729

Query: 401 LTMEE-GIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPAT-LESLEVGNLPPSLKS 458
           L ++E  I+   S     +L E L +  C   +    +   P T L ++    L PSL  
Sbjct: 730 LDLDETAIEEFPSNLRLENLDE-LIL--CEMKSEKLWERVQPLTPLMTM----LSPSLTR 782

Query: 459 LSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESF 518
           L +     L  +   + N   LE++ I NC NL+ LP+G+ NL  L+ + +  C  L +F
Sbjct: 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841

Query: 519 PEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGEL 563
           P+   +   ++ L  L    +E +P  +   ++L  L +     L
Sbjct: 842 PD---ISTNISDL-NLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL 882

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.3 bits (125), Expect = 6e-07
 Identities = 62/354 (17%), Positives = 118/354 (33%), Gaps = 48/354 (13%)

Query: 362 SSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLE 421
           SS    +     +L +        ++ RL +    N   L      +  S    + S + 
Sbjct: 22  SSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGIS 81

Query: 422 HLHI------------------ESCPSLTRIFSKNELPATLESL---------EVGNLPP 454
            L                        +++ +  +     +L+            +G L  
Sbjct: 82  SLDGSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKS 140

Query: 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGN 514
           +LK L +   +K+ES+   L N  +L+ +++S   +L  LP  L NL  L  + +     
Sbjct: 141 NLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGN-K 197

Query: 515 LESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTN 574
           +   P    L + L  L + +   +  L   L NL +L  L +         E  G  +N
Sbjct: 198 ISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256

Query: 575 LHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI-------INCDDDMVSFPPEPEDVRL 627
           L +L + +N       I         ++LR L +             ++    E     L
Sbjct: 257 LETLDLSNN------QISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLL 310

Query: 628 GTTLPLPASLTSLWISNF---PNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEK 678
            T   L   L S+ ++N            ++  L++L +L+ LD         +
Sbjct: 311 LTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNR 364

Length = 394

>gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 27/139 (19%)

Query: 366 ILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLT--MEEGIQS--SSSRRYTSSLLE 421
            L I  C  +  L    LP  L  + I NC+N+ TL   + EG++          S L E
Sbjct: 56  RLYIKDCD-IESLP--VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE 112

Query: 422 HL-HIE-SCPSLTRIFSKNELPATLESLEVGN------------LPPSLKSLSVYGCSKL 467
            +  +E    +   I  KN +P  L SL + +            + PSLK+LS+ GCS +
Sbjct: 113 SVRSLEIKGSATDSI--KN-VPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169

Query: 468 ESIAERLDNNTSLEYINIS 486
             + E+L  +  L+ I + 
Sbjct: 170 I-LPEKLPES--LQSITLH 185

Length = 426

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 77/297 (25%), Positives = 116/297 (39%), Gaps = 80/297 (26%)

Query: 244 IWKSHNELLQDI------CSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLR 297
           +  S N  L++I       +L+ L +  C    SLV  E     Q L +L    E L + 
Sbjct: 641 LRGSKN--LKEIPDLSMATNLETLKLSDC---SSLV--ELPSSIQYLNKL----EDLDMS 689

Query: 298 YCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVA---------------LPSKLKKIQ 342
            C+ L  LP + ++L SL  + +  CS L SFP+++                PS L+   
Sbjct: 690 RCENLEILP-TGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLR--- 745

Query: 343 FRECDALKL--LPEAWMSDTNSSLEILSIWVCHSLTYL------AGVQLPRS------LK 388
               D L L  +    + +    L  L   +  SLT L      + V+LP S      L+
Sbjct: 746 LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE 805

Query: 389 RLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSL-------TRIFSKN--- 438
            L I NC N+ TL    GI   S        LE L +  C  L       T I   N   
Sbjct: 806 HLEIENCINLETLP--TGINLES--------LESLDLSGCSRLRTFPDISTNISDLNLSR 855

Query: 439 ----ELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENL 491
               E+P  +E         +L  L + GC+ L+ ++  +     LE ++ S+C  L
Sbjct: 856 TGIEEVPWWIEKFS------NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 81/360 (22%), Positives = 146/360 (40%), Gaps = 63/360 (17%)

Query: 139 LRELHVIRCSKLQ--GTFPEHLPALEMLAIEKCE--ELLASITCLPALCKLKIYGCKKVV 194
           L  L +  CS L    +  ++L  LE L + +CE  E+L +   L +L +L + GC ++ 
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRL- 717

Query: 195 WRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQD 254
            +S  D   + + +   +T+ + F   P   RL  L+EL + +MK +  +W+        
Sbjct: 718 -KSFPDISTNISWLDLDETAIEEF---PSNLRLENLDELILCEMKSEK-LWE-------- 764

Query: 255 ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSS 314
                        ++Q L           +  LS  L  L L     LV+LP S  +L  
Sbjct: 765 -------------RVQPLTP--------LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803

Query: 315 LREIEIYKCSSLVSFPE-VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCH 373
           L  +EI  C +L + P  + L S L+ +    C  L+  P     D ++++  L      
Sbjct: 804 LEHLEIENCINLETLPTGINLES-LESLDLSGCSRLRTFP-----DISTNISDL------ 851

Query: 374 SLTYLAGVQLPRSLKRLVILNCDNIRTLTME--EGIQSSSSRRYTSSLLEHLHIESCPSL 431
           +L+     ++P  +++       N+  L M     +Q  S        LE +    C +L
Sbjct: 852 NLSRTGIEEVPWWIEKFS-----NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906

Query: 432 TRIFSKNELPA--TLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCE 489
           T   S N  P+   + +  + +  PS   ++   C  L+  A  L   +  + + +S  E
Sbjct: 907 TEA-SWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA-LLQQQSIFKQLILSGEE 964

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	725
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.89
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.83
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.8
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.5
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.49
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.27
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.25
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.22
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.22
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.15
KOG4341	483	consensus F-box protein containing LRR [General fu	99.13
KOG4341	483	consensus F-box protein containing LRR [General fu	99.1
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.05
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.77
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.73
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.64
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.58
PRK15386	426	type III secretion protein GogB; Provisional	98.58
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.42
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.4
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.3
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.28
PLN03150	623	hypothetical protein; Provisional	98.17
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.15
PRK15386	426	type III secretion protein GogB; Provisional	98.15
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.04
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.9
PLN03150	623	hypothetical protein; Provisional	97.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.79
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.63
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.51
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.42
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.23
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.14
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.1
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.08
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.05
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.83
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.71
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.33
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.26
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.22
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.07
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.74
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.83
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.89
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.34
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.68
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.88
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	89.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.03
smart00370	26	LRR Leucine-rich repeats, outliers.	83.93
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.93

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.9e-36  Score=360.01  Aligned_cols=513  Identities=16%  Similarity=0.162  Sum_probs=243.9

Q ss_pred             CccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCCCC
Q 048826           56 NLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVE  134 (725)
Q Consensus        56 ~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  134 (725)
                      +++.|+++++..-+.++. +..+++|+.|++++|.....+|..++.     .+.+|++|+++++ ++.+..    +  ..
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~-----~l~~L~~L~Ls~n-~l~~~~----p--~~  137 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT-----TSSSLRYLNLSNN-NFTGSI----P--RG  137 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc-----cCCCCCEEECcCC-cccccc----C--cc
Confidence            455555555422222333 555555555555555422244433321     1455555555553 222211    1  13


Q ss_pred             CCCCccEEEeccCcCcccccCC---CCCcceeeeeccChh---hhhhccCCCcccEEEecCCCceeEcccccccCCCCcc
Q 048826          135 GFPKLRELHVIRCSKLQGTFPE---HLPALEMLAIEKCEE---LLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSV  208 (725)
Q Consensus       135 ~l~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  208 (725)
                      .+++|++|++++| .+.+.+|.   .+++|+.|++++|..   ++..+..+++|+.|++++|....              
T Consensus       138 ~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--------------  202 (968)
T PLN00113        138 SIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG--------------  202 (968)
T ss_pred             ccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC--------------
Confidence            3555555555555 33333332   234455555555432   13345555666666666554211              


Q ss_pred             cccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhcc
Q 048826          209 VCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELS  288 (725)
Q Consensus       209 ~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~  288 (725)
                                   .+|..+.++++|+..++..+......+ ..+..+++|++|++++|.....++..     +..+    
T Consensus       203 -------------~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~-----l~~l----  259 (968)
T PLN00113        203 -------------QIPRELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSS-----LGNL----  259 (968)
T ss_pred             -------------cCChHHcCcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCceeccccChh-----HhCC----
Confidence                         122222233333222222222211122 22355566666666664322223221     3333    


Q ss_pred             CCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC-CCCCCCCceEEeeccCcccccccccccCCCCcccEE
Q 048826          289 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEIL  367 (725)
Q Consensus       289 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  367 (725)
                      ++|++|++++|.+.+.+|..+.++++|++|++++|.....++. +..+++|+.|++++|......+..+.  .+++|+.|
T Consensus       260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L  337 (968)
T PLN00113        260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT--SLPRLQVL  337 (968)
T ss_pred             CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh--cCCCCCEE
Confidence            5666666666665555666666666666666666543333332 23355666666666554444443332  23555666


Q ss_pred             EeeccCCccccccc-ccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccc
Q 048826          368 SIWVCHSLTYLAGV-QLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLES  446 (725)
Q Consensus       368 ~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~  446 (725)
                      ++.+|.....++.. ...++|+.|+++++.....+                                       |..+. 
T Consensus       338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~---------------------------------------p~~~~-  377 (968)
T PLN00113        338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI---------------------------------------PEGLC-  377 (968)
T ss_pred             ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC---------------------------------------ChhHh-
Confidence            65555332222211 12233333333332211111                                       11000 


Q ss_pred             cccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcC
Q 048826          447 LEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCA  526 (725)
Q Consensus       447 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  526 (725)
                          .. ++|+.|++++|...+.+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|.....++..+..++
T Consensus       378 ----~~-~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  452 (968)
T PLN00113        378 ----SS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP  452 (968)
T ss_pred             ----Cc-CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence                00 2356666666655555555556666666666666554445555555566666666666555555555455555


Q ss_pred             cCceeeeccccCccccccccCCCCCcceeecCCCCCCCCccc-CCCcccccceecccchhhHHHHhhccccccccCCCcE
Q 048826          527 KLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRR  605 (725)
Q Consensus       527 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~  605 (725)
                      +|+.|++++|...+.+|..+ ..++|+.|++++|......+. ...+++|++|++++|.... .   .+..+..+++|+.
T Consensus       453 ~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~---~p~~~~~l~~L~~  527 (968)
T PLN00113        453 SLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG-E---IPDELSSCKKLVS  527 (968)
T ss_pred             CCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee-e---CChHHcCccCCCE
Confidence            66666666665554444433 235566666666543322221 2234556666666664321 1   1123455666666


Q ss_pred             EEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCC
Q 048826          606 LTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGL  680 (725)
Q Consensus       606 L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  680 (725)
                      |++++| .....+|..+.         .+++|+.|++++|+....+|..+..+++|+.|++++|+....+|..+.
T Consensus       528 L~Ls~N-~l~~~~p~~~~---------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~  592 (968)
T PLN00113        528 LDLSHN-QLSGQIPASFS---------EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA  592 (968)
T ss_pred             EECCCC-cccccCChhHh---------CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcch
Confidence            666663 22333443332         456666666666555556666556666666666666655555555433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.9e-36  Score=353.96  Aligned_cols=510  Identities=19%  Similarity=0.182  Sum_probs=348.0

Q ss_pred             CCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCCC-CCCCCccEEEeccCcCcccccC
Q 048826           77 LPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGV-EGFPKLRELHVIRCSKLQGTFP  155 (725)
Q Consensus        77 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~p  155 (725)
                      ...++.|+++++..-..++..+      ..++.|+.|+++++ ++....    +..+ ..+++|++|++++| .+++.+|
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~------~~l~~L~~L~Ls~n-~~~~~i----p~~~~~~l~~L~~L~Ls~n-~l~~~~p  135 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAI------FRLPYIQTINLSNN-QLSGPI----PDDIFTTSSSLRYLNLSNN-NFTGSIP  135 (968)
T ss_pred             CCcEEEEEecCCCccccCChHH------hCCCCCCEEECCCC-ccCCcC----ChHHhccCCCCCEEECcCC-ccccccC
Confidence            3478999999886333343333      34899999999985 444322    3444 58999999999998 5555666


Q ss_pred             C-CCCcceeeeeccChhh---hhhccCCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccc
Q 048826          156 E-HLPALEMLAIEKCEEL---LASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLE  231 (725)
Q Consensus       156 ~-~l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~  231 (725)
                      . .+++|++|++++|...   +..++.+++|+.|++++|....                           .+|..+.++.
T Consensus       136 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~---------------------------~~p~~~~~l~  188 (968)
T PLN00113        136 RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG---------------------------KIPNSLTNLT  188 (968)
T ss_pred             ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc---------------------------cCChhhhhCc
Confidence            4 5789999999988742   5568888999999998886332                           2222233333


Q ss_pred             eeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCC
Q 048826          232 ELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLS  311 (725)
Q Consensus       232 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~  311 (725)
                      +|+..++.++...... +..+..+++|++|++++|.....++..     +..+    ++|++|++++|.+.+.+|..+++
T Consensus       189 ~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~-----l~~l----~~L~~L~L~~n~l~~~~p~~l~~  258 (968)
T PLN00113        189 SLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYE-----IGGL----TSLNHLDLVYNNLTGPIPSSLGN  258 (968)
T ss_pred             CCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChh-----HhcC----CCCCEEECcCceeccccChhHhC
Confidence            3333333333321112 223355666666666665333333322     3333    56666666666665566666666


Q ss_pred             CCCCcEEEeecCCCccccC-CCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceE
Q 048826          312 LSSLREIEIYKCSSLVSFP-EVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRL  390 (725)
Q Consensus       312 l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L  390 (725)
                      +++|++|++++|.....++ .+..+++|++|++++|.....+|..+.  .+++|+.|++.+|.....++..         
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~---------  327 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTGKIPVA---------  327 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCCcCChh---------
Confidence            6666666666654333332 233355666666666554334443321  2355555555555322211110         


Q ss_pred             EeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhh
Q 048826          391 VILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESI  470 (725)
Q Consensus       391 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  470 (725)
                                             ....++|++|+++++.- .     +.+|..+     +.+ ++|+.|++++|...+.+
T Consensus       328 -----------------------~~~l~~L~~L~L~~n~l-~-----~~~p~~l-----~~~-~~L~~L~Ls~n~l~~~~  372 (968)
T PLN00113        328 -----------------------LTSLPRLQVLQLWSNKF-S-----GEIPKNL-----GKH-NNLTVLDLSTNNLTGEI  372 (968)
T ss_pred             -----------------------HhcCCCCCEEECcCCCC-c-----CcCChHH-----hCC-CCCcEEECCCCeeEeeC
Confidence                                   01113466666665421 1     1122211     111 46999999999998888


Q ss_pred             hhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCC
Q 048826          471 AERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLT  550 (725)
Q Consensus       471 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  550 (725)
                      |..+..+++|+.|++++|.....+|..+..+++|+.|++++|+....+|..+..+++|+.|++++|.....++..+..++
T Consensus       373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  452 (968)
T PLN00113        373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP  452 (968)
T ss_pred             ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence            99999999999999999888788898899999999999999988888898899999999999999998888888888999


Q ss_pred             CcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcc
Q 048826          551 SLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTT  630 (725)
Q Consensus       551 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~  630 (725)
                      +|+.|++++|.....++.....++|+.|++++|+... .   .+..+..+++|+.|++++| .....+|..++       
T Consensus       453 ~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~-~---~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~-------  520 (968)
T PLN00113        453 SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG-A---VPRKLGSLSELMQLKLSEN-KLSGEIPDELS-------  520 (968)
T ss_pred             CCcEEECcCceeeeecCcccccccceEEECcCCccCC-c---cChhhhhhhccCEEECcCC-cceeeCChHHc-------
Confidence            9999999999765555554455899999999997642 1   1245778999999999994 44556776653       


Q ss_pred             cCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCC-CCcccccEEEecCCchh
Q 048826          631 LPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEK-GLPSSLLQLHIYRCPLI  695 (725)
Q Consensus       631 ~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l  695 (725)
                        .+++|+.|++++|.....+|..+..+++|+.|++++|.....+|.. ..+++|++|++++|+-.
T Consensus       521 --~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        521 --SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH  584 (968)
T ss_pred             --CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence              6789999999998877788988899999999999998776677764 23678999999998743

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=1.3e-27  Score=230.57  Aligned_cols=483  Identities=21%  Similarity=0.235  Sum_probs=254.6

Q ss_pred             cceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccccccCCCCCCCCCCc
Q 048826           32 LKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCL  110 (725)
Q Consensus        32 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  110 (725)
                      |..|.++.+....+-..+.  .+..|++|+++++ .+.++|+ ++++..++.|+++.+. +.++|+..      +..+.|
T Consensus        47 l~~lils~N~l~~l~~dl~--nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i------~s~~~l  116 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLK--NLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNK-LSELPEQI------GSLISL  116 (565)
T ss_pred             hhhhhhccCchhhccHhhh--cccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccch-HhhccHHH------hhhhhh
Confidence            3444445444443332222  2445555555554 4455544 5555555555555554 44444433      123444


Q ss_pred             ceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCC---CcceeeeeccChhh--hhhccCCCcccEE
Q 048826          111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHL---PALEMLAIEKCEEL--LASITCLPALCKL  185 (725)
Q Consensus       111 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l---~~L~~L~l~~~~~l--~~~~~~~~~L~~L  185 (725)
                      ..|+.++. ++.+.     +++++.+..|+.++..++ ++. +.|..+   .++..+++.++...  ++..-.++.|+++
T Consensus       117 ~~l~~s~n-~~~el-----~~~i~~~~~l~dl~~~~N-~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l  188 (565)
T KOG0472|consen  117 VKLDCSSN-ELKEL-----PDSIGRLLDLEDLDATNN-QIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHL  188 (565)
T ss_pred             hhhhcccc-ceeec-----CchHHHHhhhhhhhcccc-ccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence            55544442 33333     344444555555555554 333 444432   34455555554422  3333347788888


Q ss_pred             EecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEcc
Q 048826          186 KIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDS  265 (725)
Q Consensus       186 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  265 (725)
                      +...|-                            -+.+|+.++.+++|...+++.++.  ...+. |.++..|++|.+..
T Consensus       189 d~~~N~----------------------------L~tlP~~lg~l~~L~~LyL~~Nki--~~lPe-f~gcs~L~Elh~g~  237 (565)
T KOG0472|consen  189 DCNSNL----------------------------LETLPPELGGLESLELLYLRRNKI--RFLPE-FPGCSLLKELHVGE  237 (565)
T ss_pred             ccchhh----------------------------hhcCChhhcchhhhHHHHhhhccc--ccCCC-CCccHHHHHHHhcc
Confidence            876653                            346778888899988888888777  22233 47777888888876


Q ss_pred             CCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeec
Q 048826          266 CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRE  345 (725)
Q Consensus       266 ~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~  345 (725)
                       +.++.++.+    ....+    ++|.+|||+.|++ ..+|..+..+.+|..||+++|....-.+..+.+ .|+.|-+.|
T Consensus       238 -N~i~~lpae----~~~~L----~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leG  306 (565)
T KOG0472|consen  238 -NQIEMLPAE----HLKHL----NSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEG  306 (565)
T ss_pred             -cHHHhhHHH----Hhccc----ccceeeecccccc-ccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcC
Confidence             567776654    24455    7888899988876 678888888888889999887644334456666 778888888


Q ss_pred             cCcccccccccccCCC-CcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEE
Q 048826          346 CDALKLLPEAWMSDTN-SSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLH  424 (725)
Q Consensus       346 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~  424 (725)
                      ++ +..+...+...+. .-|++|.=.                      ..|..+..-.  ++....              
T Consensus       307 NP-lrTiRr~ii~~gT~~vLKyLrs~----------------------~~~dglS~se--~~~e~~--------------  347 (565)
T KOG0472|consen  307 NP-LRTIRREIISKGTQEVLKYLRSK----------------------IKDDGLSQSE--GGTETA--------------  347 (565)
T ss_pred             Cc-hHHHHHHHHcccHHHHHHHHHHh----------------------hccCCCCCCc--cccccc--------------
Confidence            77 4444333322211 112221100                      0000000000  000000              


Q ss_pred             EeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCC---CccEEEecCCCCcccccccccCC
Q 048826          425 IESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNT---SLEYINISNCENLKILPSGLHNL  501 (725)
Q Consensus       425 l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~~~l~~~~~~l  501 (725)
                         .+     .+...+|..      +. ..+.+.|++++-..+. +|..+....   -....++++ +.+.++|..+..+
T Consensus       348 ---~t-----~~~~~~~~~------~~-~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~l  410 (565)
T KOG0472|consen  348 ---MT-----LPSESFPDI------YA-IITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVEL  410 (565)
T ss_pred             ---CC-----CCCCcccch------hh-hhhhhhhccccccccc-CCHHHHHHhhhcceEEEeccc-chHhhhhhhhHHH
Confidence               00     000000100      00 0135555555543332 232222111   256667776 4556667666666


Q ss_pred             CcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCC-Ccccccceec
Q 048826          502 RQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDG-LPTNLHSLWI  580 (725)
Q Consensus       502 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l  580 (725)
                      ..+.+.-+..++.+..+|..+..+++|..|++++|. +..+|..++.+..|+.|+++.| ..+..|... .+..++.+-.
T Consensus       411 kelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtlla  488 (565)
T KOG0472|consen  411 KELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLA  488 (565)
T ss_pred             HHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHh
Confidence            666555555556666677777777777777777765 6677777777777777777777 333333222 1233333333


Q ss_pred             ccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcC
Q 048826          581 EDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQN  660 (725)
Q Consensus       581 ~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~  660 (725)
                      ++|+.                              ..++...        ..++.+|..|++.+ +.+..||..+.++.+
T Consensus       489 s~nqi------------------------------~~vd~~~--------l~nm~nL~tLDL~n-Ndlq~IPp~Lgnmtn  529 (565)
T KOG0472|consen  489 SNNQI------------------------------GSVDPSG--------LKNMRNLTTLDLQN-NDLQQIPPILGNMTN  529 (565)
T ss_pred             ccccc------------------------------cccChHH--------hhhhhhcceeccCC-CchhhCChhhccccc
Confidence            33322                              2222210        01344555555555 456666666666666


Q ss_pred             CCeEeccCCCC
Q 048826          661 LTSLYLLDCPK  671 (725)
Q Consensus       661 L~~L~l~~c~~  671 (725)
                      |++|++.++|.
T Consensus       530 L~hLeL~gNpf  540 (565)
T KOG0472|consen  530 LRHLELDGNPF  540 (565)
T ss_pred             eeEEEecCCcc
Confidence            66666666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.89  E-value=5.2e-26  Score=241.51  Aligned_cols=444  Identities=20%  Similarity=0.231  Sum_probs=281.9

Q ss_pred             cccCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccccccCC
Q 048826           23 LDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGN  101 (725)
Q Consensus        23 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~  101 (725)
                      ++..+...+|++|+|+++....+|..+..  +.+|+.|+++.+ .+..+|. .+++.+|++|.|.++. ++..|..+   
T Consensus        38 l~~~~~~v~L~~l~lsnn~~~~fp~~it~--l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~---  110 (1081)
T KOG0618|consen   38 LEFVEKRVKLKSLDLSNNQISSFPIQITL--LSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASI---  110 (1081)
T ss_pred             hHHhhheeeeEEeeccccccccCCchhhh--HHHHhhcccchh-hHhhCchhhhhhhcchhheeccch-hhcCchhH---
Confidence            44555565688888888888888887765  788888888886 7888887 8888888888888776 77777654   


Q ss_pred             CCCCCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCc
Q 048826          102 DSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPA  181 (725)
Q Consensus       102 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~  181 (725)
                         ....+|+.|+++.. ++...     +.-+..+..+..+..+++.++. .++...  ++.+++..+..........-.
T Consensus       111 ---~~lknl~~LdlS~N-~f~~~-----Pl~i~~lt~~~~~~~s~N~~~~-~lg~~~--ik~~~l~~n~l~~~~~~~i~~  178 (1081)
T KOG0618|consen  111 ---SELKNLQYLDLSFN-HFGPI-----PLVIEVLTAEEELAASNNEKIQ-RLGQTS--IKKLDLRLNVLGGSFLIDIYN  178 (1081)
T ss_pred             ---Hhhhcccccccchh-ccCCC-----chhHHhhhHHHHHhhhcchhhh-hhcccc--chhhhhhhhhcccchhcchhh
Confidence               33667777777773 34333     3334556666666666653222 333322  444444443322111222222


Q ss_pred             cc-EEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcE
Q 048826          182 LC-KLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKR  260 (725)
Q Consensus       182 L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~  260 (725)
                      ++ .|++.+|.... .                             ++.++..|+...|..+..     ..+-..-++|+.
T Consensus       179 l~~~ldLr~N~~~~-~-----------------------------dls~~~~l~~l~c~rn~l-----s~l~~~g~~l~~  223 (1081)
T KOG0618|consen  179 LTHQLDLRYNEMEV-L-----------------------------DLSNLANLEVLHCERNQL-----SELEISGPSLTA  223 (1081)
T ss_pred             hheeeecccchhhh-h-----------------------------hhhhccchhhhhhhhccc-----ceEEecCcchhe
Confidence            33 36666665441 1                             122222233333322222     011123367777


Q ss_pred             EEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccC-CCCCCCCCc
Q 048826          261 LTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFP-EVALPSKLK  339 (725)
Q Consensus       261 L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~  339 (725)
                      |+...|+..+.           .....|.+|+++++++++. ..+|+++..+.+|+.+++.+|.. +.++ ......+|+
T Consensus       224 L~a~~n~l~~~-----------~~~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~  290 (1081)
T KOG0618|consen  224 LYADHNPLTTL-----------DVHPVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANHNRL-VALPLRISRITSLV  290 (1081)
T ss_pred             eeeccCcceee-----------ccccccccceeeecchhhh-hcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHH
Confidence            77777654422           1123458999999999887 57789999999999999998864 5554 344477889


Q ss_pred             eEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCC
Q 048826          340 KIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSL  419 (725)
Q Consensus       340 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  419 (725)
                      .|.+..|+ ++.++....  ...+|++|++..+ .+..++...+.    .+.                          ..
T Consensus       291 ~l~~~~ne-l~yip~~le--~~~sL~tLdL~~N-~L~~lp~~~l~----v~~--------------------------~~  336 (1081)
T KOG0618|consen  291 SLSAAYNE-LEYIPPFLE--GLKSLRTLDLQSN-NLPSLPDNFLA----VLN--------------------------AS  336 (1081)
T ss_pred             HHHhhhhh-hhhCCCccc--ccceeeeeeehhc-cccccchHHHh----hhh--------------------------HH
Confidence            99888887 777776643  2478889988877 33333331000    000                          00


Q ss_pred             CCeEEEeeCCCcccc--ccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccccc
Q 048826          420 LEHLHIESCPSLTRI--FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSG  497 (725)
Q Consensus       420 L~~L~l~~~~~l~~l--~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~  497 (725)
                      ++.++.+. ..+..+  +....+             +.|+.|++.+|...+...+.+.++++|+.|++++ +.+.++|..
T Consensus       337 l~~ln~s~-n~l~~lp~~~e~~~-------------~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas  401 (1081)
T KOG0618|consen  337 LNTLNVSS-NKLSTLPSYEENNH-------------AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPAS  401 (1081)
T ss_pred             HHHHhhhh-ccccccccccchhh-------------HHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHH
Confidence            11111111 111110  222222             2489999999999888888899999999999999 567767654


Q ss_pred             -ccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCc-ccc
Q 048826          498 -LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLP-TNL  575 (725)
Q Consensus       498 -~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~~L  575 (725)
                       +.+++.|++|++++ +.++.+|.....++.|++|...+|. +..+| .+..++.|+.+|++.|.--...-....+ ++|
T Consensus       402 ~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L  478 (1081)
T KOG0618|consen  402 KLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL  478 (1081)
T ss_pred             HHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence             56789999999999 5788888888889999999988887 55777 7888999999999988422221122333 899


Q ss_pred             cceecccchh
Q 048826          576 HSLWIEDNME  585 (725)
Q Consensus       576 ~~L~l~~n~~  585 (725)
                      ++||+++|..
T Consensus       479 kyLdlSGN~~  488 (1081)
T KOG0618|consen  479 KYLDLSGNTR  488 (1081)
T ss_pred             ceeeccCCcc
Confidence            9999999964

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.89  E-value=3.3e-24  Score=216.29  Aligned_cols=223  Identities=16%  Similarity=0.166  Sum_probs=152.0

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      ++|+.|+|..|.+...-.-.|..+++|+.|.+..| .+..+-+ .+..+.++++|++..|+....-..++..+.+|+.|+
T Consensus       221 ~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~  299 (873)
T KOG4194|consen  221 PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD  299 (873)
T ss_pred             chhhhhhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence            35888888887655444566778888888888874 3444433 355688888888888655444445667778888888


Q ss_pred             eccccCccccccccCCCCCcceeecCCCCCCCCcccC--CCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEED--GLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      +++|.+...-++.+..+++|+.|++++| .+..++..  ..+..|++|.|+.|..-  .+.+  ..|..+++|++|++++
T Consensus       300 lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~--~l~e--~af~~lssL~~LdLr~  374 (873)
T KOG4194|consen  300 LSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSID--HLAE--GAFVGLSSLHKLDLRS  374 (873)
T ss_pred             cchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchH--HHHh--hHHHHhhhhhhhcCcC
Confidence            8888876666777888888888888888 34444332  22478888888888653  3333  5677888999999887


Q ss_pred             CCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCCCCcccCCCCC-cccccEEE
Q 048826          611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCPKLRYFPEKGL-PSSLLQLH  688 (725)
Q Consensus       611 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~  688 (725)
                      + ...-.+.+..+      .|..+++|+.|++.+ ++++.|+. ++..+++|+.|++.+++ +.++....+ +-.|++|.
T Consensus       375 N-~ls~~IEDaa~------~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv  445 (873)
T KOG4194|consen  375 N-ELSWCIEDAAV------AFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELV  445 (873)
T ss_pred             C-eEEEEEecchh------hhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhh
Confidence            3 22222222211      234688999999998 66888886 56788999999998854 455544433 23566665


Q ss_pred             ecC
Q 048826          689 IYR  691 (725)
Q Consensus       689 l~~  691 (725)
                      +..
T Consensus       446 ~nS  448 (873)
T KOG4194|consen  446 MNS  448 (873)
T ss_pred             hcc
Confidence            544

>PLN03210 Resistant to P

Probab=99.88  E-value=1.3e-21  Score=233.03  Aligned_cols=313  Identities=24%  Similarity=0.327  Sum_probs=159.2

Q ss_pred             CcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeec
Q 048826          315 LREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILN  394 (725)
Q Consensus       315 L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~  394 (725)
                      |+.|.+.+++ ++.+|....+.+|+.|++.++. ++.++...  ..+++|+.|+++++..++.++.....++|+.|++.+
T Consensus       591 Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~--~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~  666 (1153)
T PLN03210        591 LRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSK-LEKLWDGV--HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSD  666 (1153)
T ss_pred             cEEEEecCCC-CCCCCCcCCccCCcEEECcCcc-cccccccc--ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecC
Confidence            4444444432 3333333334444444444443 33333322  122444444444444444444434444455555555


Q ss_pred             CCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhh
Q 048826          395 CDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERL  474 (725)
Q Consensus       395 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  474 (725)
                      |..+..++..  +.       ..++|+.|++++|..++. ++...-            .++|+.|++++|.....+|.. 
T Consensus       667 c~~L~~lp~s--i~-------~L~~L~~L~L~~c~~L~~-Lp~~i~------------l~sL~~L~Lsgc~~L~~~p~~-  723 (1153)
T PLN03210        667 CSSLVELPSS--IQ-------YLNKLEDLDMSRCENLEI-LPTGIN------------LKSLYRLNLSGCSRLKSFPDI-  723 (1153)
T ss_pred             CCCccccchh--hh-------ccCCCCEEeCCCCCCcCc-cCCcCC------------CCCCCEEeCCCCCCccccccc-
Confidence            4444433311  00       112355555555554444 221110            023555555555544443321 


Q ss_pred             cCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccc-------cCCCCcCcCcCceeeeccccCccccccccC
Q 048826          475 DNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLES-------FPEGGLLCAKLTRLTILDCKRLEALPKGLH  547 (725)
Q Consensus       475 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  547 (725)
                        ..+|+.|+++++ .+..+|..+ .+++|++|.+.++.....       .+.....+++|+.|++++|+....+|..+.
T Consensus       724 --~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~  799 (1153)
T PLN03210        724 --STNISWLDLDET-AIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ  799 (1153)
T ss_pred             --cCCcCeeecCCC-ccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence              235555666553 244454433 355555555554321100       011122235666777776666666666666


Q ss_pred             CCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCccccc
Q 048826          548 NLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRL  627 (725)
Q Consensus       548 ~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~  627 (725)
                      ++++|+.|++++|..+..+|....+++|+.|++++|..+.. +      ....++|+.|++++  +.+..+|..+.    
T Consensus       800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~-~------p~~~~nL~~L~Ls~--n~i~~iP~si~----  866 (1153)
T PLN03210        800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT-F------PDISTNISDLNLSR--TGIEEVPWWIE----  866 (1153)
T ss_pred             CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc-c------cccccccCEeECCC--CCCccChHHHh----
Confidence            67777777777666666555544556677777776654421 1      11235677777766  44555665543    


Q ss_pred             CcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccC
Q 048826          628 GTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFP  676 (725)
Q Consensus       628 ~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~  676 (725)
                           .+++|+.|++++|+++..+|..+..+++|+.+++++|+.++.++
T Consensus       867 -----~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        867 -----KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             -----cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence                 46777777777777777777666677777777777777776543

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=1.1e-23  Score=212.72  Aligned_cols=318  Identities=16%  Similarity=0.181  Sum_probs=158.5

Q ss_pred             CCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC--CC
Q 048826          256 CSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VA  333 (725)
Q Consensus       256 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~  333 (725)
                      .+|++|+|.+ +.++.+..+    .++.+    +.|+.|||+.|.+...-...+..-.++++|+|++|. ++.+..  +.
T Consensus       125 ghl~~L~L~~-N~I~sv~se----~L~~l----~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~  194 (873)
T KOG4194|consen  125 GHLEKLDLRH-NLISSVTSE----ELSAL----PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFD  194 (873)
T ss_pred             cceeEEeeec-cccccccHH----HHHhH----hhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-cccccccccc
Confidence            4566666666 345554443    24444    666777777666543333345555667777777654 444432  33


Q ss_pred             CCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCc
Q 048826          334 LPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSR  413 (725)
Q Consensus       334 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  413 (725)
                      .+.+|..|.++.|. +..+|...+ ..++.|+.|++..|. ++.+.         -+.+.+                   
T Consensus       195 ~lnsL~tlkLsrNr-ittLp~r~F-k~L~~L~~LdLnrN~-irive---------~ltFqg-------------------  243 (873)
T KOG4194|consen  195 SLNSLLTLKLSRNR-ITTLPQRSF-KRLPKLESLDLNRNR-IRIVE---------GLTFQG-------------------  243 (873)
T ss_pred             ccchheeeecccCc-ccccCHHHh-hhcchhhhhhccccc-eeeeh---------hhhhcC-------------------
Confidence            35566666666665 444443322 124556666655442 11000         000001                   


Q ss_pred             ccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccc
Q 048826          414 RYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKI  493 (725)
Q Consensus       414 ~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  493 (725)
                                                +             ++|+.|.+..|++...--..|-.+.++++|+++.|.....
T Consensus       244 --------------------------L-------------~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  244 --------------------------L-------------PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             --------------------------c-------------hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence                                      1             1244444444444333333444455555555555332222


Q ss_pred             ccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCC--CCCcccCCC
Q 048826          494 LPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGE--LPSLEEDGL  571 (725)
Q Consensus       494 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--l~~~~~~~~  571 (725)
                      -..++.+++.|+.|++++|..-+.-+..+.-+++|++|++++|....--+..+..+..|++|.++.|..  +....+.+ 
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~-  363 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG-  363 (873)
T ss_pred             hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH-
Confidence            223344555555555555444344444455555666666666553333333455556666666666521  11111222 


Q ss_pred             cccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccc
Q 048826          572 PTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERL  651 (725)
Q Consensus       572 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i  651 (725)
                      +++|++|||+.|...+ .+.+....+.++++|++|.+.+  +.+..+|.-.        |..++.||+|++.+|.....-
T Consensus       364 lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~g--Nqlk~I~krA--------fsgl~~LE~LdL~~NaiaSIq  432 (873)
T KOG4194|consen  364 LSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTG--NQLKSIPKRA--------FSGLEALEHLDLGDNAIASIQ  432 (873)
T ss_pred             hhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecC--ceeeecchhh--------hccCcccceecCCCCcceeec
Confidence            2666666666665433 2222233456677777777776  5666666543        346777777777775544333


Q ss_pred             cccccCCcCCCeEec
Q 048826          652 SSSIVDLQNLTSLYL  666 (725)
Q Consensus       652 ~~~~~~~~~L~~L~l  666 (725)
                      +.+|..+ +|++|-+
T Consensus       433 ~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  433 PNAFEPM-ELKELVM  446 (873)
T ss_pred             ccccccc-hhhhhhh
Confidence            4455555 5666543

>PLN03210 Resistant to P

Probab=99.87  E-value=9.9e-21  Score=225.41  Aligned_cols=275  Identities=20%  Similarity=0.282  Sum_probs=172.8

Q ss_pred             ccCCCCCCcceEEEeccCC-------CCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccc
Q 048826           24 DMLKPHKNLKQFCISGYGG-------TKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGS   96 (725)
Q Consensus        24 ~~l~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~   96 (725)
                      ++|+.+++|+.|.+.....       ..+|..+.. --.+|+.|++.++ .++.+|.--.+.+|+.|++.++. ++.++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~-lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY-LPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSK-LEKLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhh-cCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCcc-cccccc
Confidence            3678888899888865431       123433322 1246888888886 67888873367888888888876 777664


Q ss_pred             cccCCCCCCCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCC---CCcceeeeeccChhh-
Q 048826           97 EFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEH---LPALEMLAIEKCEEL-  172 (725)
Q Consensus        97 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~---l~~L~~L~l~~~~~l-  172 (725)
                      ..      ..+++|+.|+++++..++..      +.+..+++|++|++++|..+. .+|..   +++|+.|++++|..+ 
T Consensus       629 ~~------~~l~~Lk~L~Ls~~~~l~~i------p~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~  695 (1153)
T PLN03210        629 GV------HSLTGLRNIDLRGSKNLKEI------PDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLE  695 (1153)
T ss_pred             cc------ccCCCCCEEECCCCCCcCcC------CccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcC
Confidence            43      34788888888887666553      345668888888888887775 66754   467888888888755 


Q ss_pred             -hhhccCCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhh
Q 048826          173 -LASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNEL  251 (725)
Q Consensus       173 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~  251 (725)
                       .+....+++|+.|++++|....                           .+|....+|+.|.+.+..-    ...+.. 
T Consensus       696 ~Lp~~i~l~sL~~L~Lsgc~~L~---------------------------~~p~~~~nL~~L~L~~n~i----~~lP~~-  743 (1153)
T PLN03210        696 ILPTGINLKSLYRLNLSGCSRLK---------------------------SFPDISTNISWLDLDETAI----EEFPSN-  743 (1153)
T ss_pred             ccCCcCCCCCCCEEeCCCCCCcc---------------------------ccccccCCcCeeecCCCcc----cccccc-
Confidence             1222267888888888886432                           1222245666666655431    112222 


Q ss_pred             hhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC
Q 048826          252 LQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE  331 (725)
Q Consensus       252 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~  331 (725)
                       ..+++|+.|.+.++... .++.... .........+++|+.|++++|.....+|..++++++|+.|++++|..++.+|.
T Consensus       744 -~~l~~L~~L~l~~~~~~-~l~~~~~-~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~  820 (1153)
T PLN03210        744 -LRLENLDELILCEMKSE-KLWERVQ-PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT  820 (1153)
T ss_pred             -ccccccccccccccchh-hcccccc-ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence             24677777777664321 1111000 00000112346888888888887778888888888888888888877666665


Q ss_pred             CCCCCCCceEEeeccCcc
Q 048826          332 VALPSKLKKIQFRECDAL  349 (725)
Q Consensus       332 ~~~l~~L~~L~l~~~~~~  349 (725)
                      ...+++|+.|++++|..+
T Consensus       821 ~~~L~sL~~L~Ls~c~~L  838 (1153)
T PLN03210        821 GINLESLESLDLSGCSRL  838 (1153)
T ss_pred             CCCccccCEEECCCCCcc
Confidence            445556666665555433

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=3.6e-23  Score=210.15  Aligned_cols=224  Identities=18%  Similarity=0.188  Sum_probs=171.8

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCC-ccccCCCCcCcCcCceeeec
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGN-LESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~  534 (725)
                      |-.|+|++| .++.+|+....+.+|++|++++|....---.-+..+++|+.|++++.+. +..+|..+-.+.+|..+|++
T Consensus       152 LLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  152 LLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS  230 (1255)
T ss_pred             Hhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence            677888886 5667777888888999999988653221112233467888888887543 45688888888899999998


Q ss_pred             cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCC
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDD  614 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  614 (725)
                      .|. +..+|..+..+++|+.|++|+|..-+--...+...+|++|+++.|+...     .|..+.++++|++|.+.++...
T Consensus       231 ~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  231 ENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             ccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCccc
Confidence            886 6778888899999999999998432222234455889999999997542     2246788899999999886667


Q ss_pred             CccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCC-CCcccccEEEecCCc
Q 048826          615 MVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEK-GLPSSLLQLHIYRCP  693 (725)
Q Consensus       615 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~  693 (725)
                      .+.+|++++         .+.+|+.+...+ ++++-.|.++..|+.|+.|.+++ +.+-.+|+. .+++.|+.|+++..|
T Consensus       305 FeGiPSGIG---------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  305 FEGIPSGIG---------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             ccCCccchh---------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCc
Confidence            888998886         678889888888 67999999888999999999987 566677765 457889999999999


Q ss_pred             hhHH
Q 048826          694 LIEE  697 (725)
Q Consensus       694 ~l~~  697 (725)
                      +|.-
T Consensus       374 nLVM  377 (1255)
T KOG0444|consen  374 NLVM  377 (1255)
T ss_pred             CccC
Confidence            8863

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.83  E-value=9.2e-23  Score=217.03  Aligned_cols=419  Identities=20%  Similarity=0.221  Sum_probs=247.8

Q ss_pred             cCCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcC
Q 048826          177 TCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDIC  256 (725)
Q Consensus       177 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  256 (725)
                      .+.-+|+.|+++++....+.                            .....+..|.-.+++.+.. ...+ .-..++.
T Consensus        42 ~~~v~L~~l~lsnn~~~~fp----------------------------~~it~l~~L~~ln~s~n~i-~~vp-~s~~~~~   91 (1081)
T KOG0618|consen   42 EKRVKLKSLDLSNNQISSFP----------------------------IQITLLSHLRQLNLSRNYI-RSVP-SSCSNMR   91 (1081)
T ss_pred             hheeeeEEeeccccccccCC----------------------------chhhhHHHHhhcccchhhH-hhCc-hhhhhhh
Confidence            33444888999888654432                            2334444444444444433 2233 3347788


Q ss_pred             CCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCC
Q 048826          257 SLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPS  336 (725)
Q Consensus       257 ~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~  336 (725)
                      +|+.+.|.+ +.+..+|.+     +..+    .+|++|++++|.+ +.+|..+..+..+..+..++|..+..++...   
T Consensus        92 ~l~~lnL~~-n~l~~lP~~-----~~~l----knl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~---  157 (1081)
T KOG0618|consen   92 NLQYLNLKN-NRLQSLPAS-----ISEL----KNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTS---  157 (1081)
T ss_pred             cchhheecc-chhhcCchh-----HHhh----hcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcccc---
Confidence            888888886 677777754     5666    7888999998887 6788878888888888888874444444333   


Q ss_pred             CCceEEeeccCcccccccccccCCCCcccE-EEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCccc
Q 048826          337 KLKKIQFRECDALKLLPEAWMSDTNSSLEI-LSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRY  415 (725)
Q Consensus       337 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  415 (725)
                       .+.+++..+.....+....     ..+++ |++.++...             .+++..+..++.+....+  .......
T Consensus       158 -ik~~~l~~n~l~~~~~~~i-----~~l~~~ldLr~N~~~-------------~~dls~~~~l~~l~c~rn--~ls~l~~  216 (1081)
T KOG0618|consen  158 -IKKLDLRLNVLGGSFLIDI-----YNLTHQLDLRYNEME-------------VLDLSNLANLEVLHCERN--QLSELEI  216 (1081)
T ss_pred             -chhhhhhhhhcccchhcch-----hhhheeeecccchhh-------------hhhhhhccchhhhhhhhc--ccceEEe
Confidence             5566666555444444332     22333 677666422             233333333333321110  1001122


Q ss_pred             ccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc
Q 048826          416 TSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP  495 (725)
Q Consensus       416 ~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~  495 (725)
                      ..++++.|+..+++-.+.              .....|.+|+.++++.+.. ..+|.+++.+.+|+.++..+| .+..+|
T Consensus       217 ~g~~l~~L~a~~n~l~~~--------------~~~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N-~l~~lp  280 (1081)
T KOG0618|consen  217 SGPSLTALYADHNPLTTL--------------DVHPVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANHN-RLVALP  280 (1081)
T ss_pred             cCcchheeeeccCcceee--------------ccccccccceeeecchhhh-hcchHHHHhcccceEecccch-hHHhhH
Confidence            234466666655443321              1222345799999999754 445688889999999999884 457777


Q ss_pred             ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcccccccc-CCCC-CcceeecCCCCCCCCcc--cCCC
Q 048826          496 SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGL-HNLT-SLQQLTIGKGGELPSLE--EDGL  571 (725)
Q Consensus       496 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~-~L~~L~l~~~~~l~~~~--~~~~  571 (725)
                      ..+...++|+.|.+.+ +.++.+|.....+..|++|++..|. +.++|..+ .... +|..|..+.+. +...+  ....
T Consensus       281 ~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~~e~~  357 (1081)
T KOG0618|consen  281 LRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNK-LSTLPSYEENN  357 (1081)
T ss_pred             HHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhcc-ccccccccchh
Confidence            7777888888888887 4677788777778888999998886 55565532 2222 24555555442 11111  1222


Q ss_pred             cccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccc
Q 048826          572 PTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERL  651 (725)
Q Consensus       572 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i  651 (725)
                      .+.|+.|.+.+|......++.    +.++.+||.|++++  +.+..||...-        ..++.|++|++++ ++++.+
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~----l~~~~hLKVLhLsy--NrL~~fpas~~--------~kle~LeeL~LSG-NkL~~L  422 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPV----LVNFKHLKVLHLSY--NRLNSFPASKL--------RKLEELEELNLSG-NKLTTL  422 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhh----hccccceeeeeecc--cccccCCHHHH--------hchHHhHHHhccc-chhhhh
Confidence            356666666666555444433    55666666666666  55555665442        2556666666666 445544


Q ss_pred             cc----------------------cccCCcCCCeEeccCCCCCcccC-CCCCc-ccccEEEecCCchh
Q 048826          652 SS----------------------SIVDLQNLTSLYLLDCPKLRYFP-EKGLP-SSLLQLHIYRCPLI  695 (725)
Q Consensus       652 ~~----------------------~~~~~~~L~~L~l~~c~~l~~l~-~~~~~-~~L~~L~l~~c~~l  695 (725)
                      |.                      .+..++.|+.+|++. +.++++. ....+ |.|++|++.+++.+
T Consensus       423 p~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  423 PDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCccc
Confidence            43                      445566677777765 4455533 22345 67888888877753

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.83  E-value=3.9e-24  Score=206.63  Aligned_cols=450  Identities=21%  Similarity=0.224  Sum_probs=261.7

Q ss_pred             ccCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccccccCCC
Q 048826           24 DMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGND  102 (725)
Q Consensus        24 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~  102 (725)
                      +.+....-|.+|++.++...++|..++.  +.+++.|+.+.+ ++..+|. ++.+++|++|+++++. +.+++++++.  
T Consensus        62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~--l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~--  135 (565)
T KOG0472|consen   62 EDLKNLACLTVLNVHDNKLSQLPAAIGE--LEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGR--  135 (565)
T ss_pred             HhhhcccceeEEEeccchhhhCCHHHHH--HHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccc-eeecCchHHH--
Confidence            4667778889999999999999999987  889999999997 8999998 9999999999999987 7777766532  


Q ss_pred             CCCCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCC---CCcceeeeeccCh--hhhhhcc
Q 048826          103 SSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEH---LPALEMLAIEKCE--ELLASIT  177 (725)
Q Consensus       103 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~---l~~L~~L~l~~~~--~l~~~~~  177 (725)
                          +..|+.|+..+. +....     +.++..+.+|..+.+.++ +++ .+|..   +..|++++...+.  .++..++
T Consensus       136 ----~~~l~dl~~~~N-~i~sl-----p~~~~~~~~l~~l~~~~n-~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg  203 (565)
T KOG0472|consen  136 ----LLDLEDLDATNN-QISSL-----PEDMVNLSKLSKLDLEGN-KLK-ALPENHIAMKRLKHLDCNSNLLETLPPELG  203 (565)
T ss_pred             ----Hhhhhhhhcccc-ccccC-----chHHHHHHHHHHhhcccc-chh-hCCHHHHHHHHHHhcccchhhhhcCChhhc
Confidence                455666665552 33333     555566777777777766 554 44432   3456666554433  2356677


Q ss_pred             CCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCC
Q 048826          178 CLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICS  257 (725)
Q Consensus       178 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  257 (725)
                      .+.+|..|++..|.+...+...                          .++.|+++.+...    .+...+....+.+++
T Consensus       204 ~l~~L~~LyL~~Nki~~lPef~--------------------------gcs~L~Elh~g~N----~i~~lpae~~~~L~~  253 (565)
T KOG0472|consen  204 GLESLELLYLRRNKIRFLPEFP--------------------------GCSLLKELHVGEN----QIEMLPAEHLKHLNS  253 (565)
T ss_pred             chhhhHHHHhhhcccccCCCCC--------------------------ccHHHHHHHhccc----HHHhhHHHHhccccc
Confidence            7888888888877655533221                          2334444444322    224466777789999


Q ss_pred             CcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccC----CCC
Q 048826          258 LKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFP----EVA  333 (725)
Q Consensus       258 L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~~  333 (725)
                      +.+||+++ ++++..|.+     +.-+    .+|++||+++|.+ +.+|..++++ .|+.|.+.||+ ++.+.    ..+
T Consensus       254 l~vLDLRd-Nklke~Pde-----~clL----rsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~g  320 (565)
T KOG0472|consen  254 LLVLDLRD-NKLKEVPDE-----ICLL----RSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKG  320 (565)
T ss_pred             ceeeeccc-cccccCchH-----HHHh----hhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCc-hHHHHHHHHccc
Confidence            99999999 689998876     3344    7899999999887 6888899999 99999999997 32221    111


Q ss_pred             ---CCCCCceEE----eeccCcc----ccccccc--ccCCCCcccEEEeeccCCccccccccc----ccccceEEeecCC
Q 048826          334 ---LPSKLKKIQ----FRECDAL----KLLPEAW--MSDTNSSLEILSIWVCHSLTYLAGVQL----PRSLKRLVILNCD  396 (725)
Q Consensus       334 ---~l~~L~~L~----l~~~~~~----~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~----~~~L~~L~l~~~~  396 (725)
                         .++.|+.-.    ++....-    .+.+...  ......+.+.|++++- .++.+|...+    -.-+...++++..
T Consensus       321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNq  399 (565)
T KOG0472|consen  321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQ  399 (565)
T ss_pred             HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccch
Confidence               133333200    0100000    0001000  0112245677776654 4445544311    1113444444422


Q ss_pred             CccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcC
Q 048826          397 NIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDN  476 (725)
Q Consensus       397 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~  476 (725)
                       +..++  .+....      ..-...+.+++  +..+ |...         .+..+ ++|..|++++| ....+|..++.
T Consensus       400 -L~elP--k~L~~l------kelvT~l~lsn--n~is-fv~~---------~l~~l-~kLt~L~L~NN-~Ln~LP~e~~~  456 (565)
T KOG0472|consen  400 -LCELP--KRLVEL------KELVTDLVLSN--NKIS-FVPL---------ELSQL-QKLTFLDLSNN-LLNDLPEEMGS  456 (565)
T ss_pred             -Hhhhh--hhhHHH------HHHHHHHHhhc--Cccc-cchH---------HHHhh-hcceeeecccc-hhhhcchhhhh
Confidence             22222  000000      00000011110  0000 1100         01111 34666666664 45555666666


Q ss_pred             CCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCC-CCcCcCcCceeeeccccCccccccccCCCCCccee
Q 048826          477 NTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQL  555 (725)
Q Consensus       477 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  555 (725)
                      +..|+.|+++.| .+..+|.++..+..++.+-.++ ..++.++. ++..|.+|..||+.+|. +..+|..+++|.+|++|
T Consensus       457 lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hL  533 (565)
T KOG0472|consen  457 LVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHL  533 (565)
T ss_pred             hhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEE
Confidence            666666666663 5555666555555555554444 33344433 35666666666666665 45566666666666666


Q ss_pred             ecCCCC
Q 048826          556 TIGKGG  561 (725)
Q Consensus       556 ~l~~~~  561 (725)
                      .+++|+
T Consensus       534 eL~gNp  539 (565)
T KOG0472|consen  534 ELDGNP  539 (565)
T ss_pred             EecCCc
Confidence            666663

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.80  E-value=7.1e-22  Score=200.84  Aligned_cols=179  Identities=22%  Similarity=0.312  Sum_probs=123.1

Q ss_pred             CccEEEEecccch-hhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          455 SLKSLSVYGCSKL-ESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       455 ~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      +|+.|++++.+.+ ..+|.++..+.+|..+|++. +.+..+|+++.++++|+.|++++ +.++.+........+|+.|++
T Consensus       198 sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNl  275 (1255)
T KOG0444|consen  198 SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNL  275 (1255)
T ss_pred             hhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcc
Confidence            4677777766543 45677777788888888887 56777788888888888888888 455666555555667888888


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCC-CCCccc-CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGE-LPSLEE-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC  611 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~  611 (725)
                      +.|. ++.+|..+..++.|+.|.+.+|.- ...+|. .+.+.+|+++...+|...     -.|..+..|..|+.|.+.. 
T Consensus       276 SrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-----lVPEglcRC~kL~kL~L~~-  348 (1255)
T KOG0444|consen  276 SRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-----LVPEGLCRCVKLQKLKLDH-  348 (1255)
T ss_pred             ccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-----cCchhhhhhHHHHHhcccc-
Confidence            8876 667788888888888888777731 222332 444567777777766432     1234567777777777776 


Q ss_pred             CCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc
Q 048826          612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS  652 (725)
Q Consensus       612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~  652 (725)
                       +.+..+|..+.         .++.|+.|++.+|+++..-|
T Consensus       349 -NrLiTLPeaIH---------lL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  349 -NRLITLPEAIH---------LLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             -cceeechhhhh---------hcCCcceeeccCCcCccCCC
Confidence             66777777763         67778888888777776554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.50  E-value=1.6e-13  Score=152.05  Aligned_cols=132  Identities=23%  Similarity=0.288  Sum_probs=97.0

Q ss_pred             CCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCCC
Q 048826           30 KNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPC  109 (725)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  109 (725)
                      .+-..|+++++....+|..+.    .+|+.|.+.+| .++.+|..  +++|++|++++|. ++.+|..         +++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N-~Lt~LP~l--p~~Lk~LdLs~N~-LtsLP~l---------p~s  263 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPAL--PPELRTLEVSGNQ-LTSLPVL---------PPG  263 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh----cCCCEEEccCC-cCCCCCCC--CCCCcEEEecCCc-cCcccCc---------ccc
Confidence            567789999999999997663    48999999997 88889873  6899999999986 8888742         678


Q ss_pred             cceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccC-CCcccEEEec
Q 048826          110 LETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITC-LPALCKLKIY  188 (725)
Q Consensus       110 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~-~~~L~~L~l~  188 (725)
                      |++|++.++ .+....        ..+++|+.|++++| +++ .+|..+++|+.|++++|...  .++. .+.|+.|.++
T Consensus       264 L~~L~Ls~N-~L~~Lp--------~lp~~L~~L~Ls~N-~Lt-~LP~~p~~L~~LdLS~N~L~--~Lp~lp~~L~~L~Ls  330 (788)
T PRK15387        264 LLELSIFSN-PLTHLP--------ALPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQLA--SLPALPSELCKLWAY  330 (788)
T ss_pred             cceeeccCC-chhhhh--------hchhhcCEEECcCC-ccc-cccccccccceeECCCCccc--cCCCCcccccccccc
Confidence            999999885 344431        23467888999887 666 77777778888888887432  1211 2356666666


Q ss_pred             CCC
Q 048826          189 GCK  191 (725)
Q Consensus       189 ~~~  191 (725)
                      +|.
T Consensus       331 ~N~  333 (788)
T PRK15387        331 NNQ  333 (788)
T ss_pred             cCc
Confidence            665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.49  E-value=2.2e-13  Score=150.94  Aligned_cols=72  Identities=24%  Similarity=0.287  Sum_probs=41.6

Q ss_pred             CCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEE
Q 048826          289 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILS  368 (725)
Q Consensus       289 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  368 (725)
                      .+-..|+++++.+ +.+|..+.  ++|+.|++.+|. ++.+|.  .+++|++|++++|. ++.+|..     .++|++|+
T Consensus       201 ~~~~~LdLs~~~L-tsLP~~l~--~~L~~L~L~~N~-Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCC-CcCCcchh--cCCCEEEccCCc-CCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceee
Confidence            3456777777755 35666554  367777777764 555543  25667777776663 4444432     13455555


Q ss_pred             eecc
Q 048826          369 IWVC  372 (725)
Q Consensus       369 l~~~  372 (725)
                      +.+|
T Consensus       269 Ls~N  272 (788)
T PRK15387        269 IFSN  272 (788)
T ss_pred             ccCC
Confidence            5544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.31  E-value=1.8e-13  Score=133.26  Aligned_cols=288  Identities=16%  Similarity=0.107  Sum_probs=152.4

Q ss_pred             CCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeeccc
Q 048826           41 GGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDM  118 (725)
Q Consensus        41 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~  118 (725)
                      +...+|..+-    ..-+.++|..| .++.+|+  |+.+++||+|+|++|. |+.|.++.|.     ++++|-+|-+.+.
T Consensus        57 GL~eVP~~LP----~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~-----GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   57 GLTEVPANLP----PETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFK-----GLASLLSLVLYGN  125 (498)
T ss_pred             CcccCcccCC----CcceEEEeccC-CcccCChhhccchhhhceecccccc-hhhcChHhhh-----hhHhhhHHHhhcC
Confidence            3445565553    36788899887 8999988  9999999999999887 8888776643     3677777777776


Q ss_pred             ccccccccCCCCCC-CCCCCCccEEEeccCcCcccccC----CCCCcceeeeeccChhh---hhhccCCCcccEEEecCC
Q 048826          119 EEWEDWIPHGSSQG-VEGFPKLRELHVIRCSKLQGTFP----EHLPALEMLAIEKCEEL---LASITCLPALCKLKIYGC  190 (725)
Q Consensus       119 ~~l~~~~~~~~~~~-~~~l~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~  190 (725)
                      +++++.     +.+ |+++..|+.|.+.-| ++. .++    ..++++..|.+.++..-   ...+..+..++.+.+..+
T Consensus       126 NkI~~l-----~k~~F~gL~slqrLllNan-~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  126 NKITDL-----PKGAFGGLSSLQRLLLNAN-HIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             Cchhhh-----hhhHhhhHHHHHHHhcChh-hhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence            677776     333 477888888877655 332 222    23555666666555422   123444555555555544


Q ss_pred             CceeEcccccccCCCCcccccCCCCccc-ccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCc
Q 048826          191 KKVVWRSSTDHLGSQNSVVCGDTSNQVF-LTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKL  269 (725)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  269 (725)
                      .....-.                -.+.. +....+..++..+-..-..+...+.-+.-...+......+..--...|.-.
T Consensus       199 p~icdCn----------------L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d  262 (498)
T KOG4237|consen  199 PFICDCN----------------LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPD  262 (498)
T ss_pred             ccccccc----------------cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcC
Confidence            3211000                00000 111112334444333222222222200011111111111111111122111


Q ss_pred             ccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC--CCCCCCCceEEeeccC
Q 048826          270 QSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKKIQFRECD  347 (725)
Q Consensus       270 ~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~l~~~~  347 (725)
                      ..-|.    ..|..+    ++|+.|+|++|.+...-+.+|.....++.|.|.+|. +..+..  +..+.+|++|++.+|.
T Consensus       263 ~~cP~----~cf~~L----~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~  333 (498)
T KOG4237|consen  263 SICPA----KCFKKL----PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQ  333 (498)
T ss_pred             CcChH----HHHhhc----ccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCe
Confidence            11111    224444    677777777777766666677777777777777764 444433  2236677777777776


Q ss_pred             cccccccccccCCCCcccEEEeeccC
Q 048826          348 ALKLLPEAWMSDTNSSLEILSIWVCH  373 (725)
Q Consensus       348 ~~~~~~~~~~~~~~~~L~~L~l~~~~  373 (725)
                      .....|..+.  ...+|.+|.+..|+
T Consensus       334 it~~~~~aF~--~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  334 ITTVAPGAFQ--TLFSLSTLNLLSNP  357 (498)
T ss_pred             eEEEeccccc--ccceeeeeehccCc
Confidence            4444454442  33566667666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.27  E-value=5.4e-12  Score=141.01  Aligned_cols=244  Identities=17%  Similarity=0.231  Sum_probs=147.5

Q ss_pred             CCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCCC
Q 048826           30 KNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPC  109 (725)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  109 (725)
                      .+...|++++++...+|..+.    ++|+.|++++| .++.+|. ...++|++|++++|. ++.+|..+        ++.
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip----~~L~~L~Ls~N-~LtsLP~-~l~~nL~~L~Ls~N~-LtsLP~~l--------~~~  242 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP----EQITTLILDNN-ELKSLPE-NLQGNIKTLYANSNQ-LTSIPATL--------PDT  242 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc----cCCcEEEecCC-CCCcCCh-hhccCCCEEECCCCc-cccCChhh--------hcc
Confidence            577899999999999987663    57999999998 7889987 123699999999986 88887643        457


Q ss_pred             cceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCC-cceeeeeccChhh--hhhccCCCcccEEE
Q 048826          110 LETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLP-ALEMLAIEKCEEL--LASITCLPALCKLK  186 (725)
Q Consensus       110 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~-~L~~L~l~~~~~l--~~~~~~~~~L~~L~  186 (725)
                      |+.|+++++ ++...     +..+  .++|+.|+++++ +++ .+|..++ +|+.|++++|..-  +..+  .++|+.|+
T Consensus       243 L~~L~Ls~N-~L~~L-----P~~l--~s~L~~L~Ls~N-~L~-~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~  310 (754)
T PRK15370        243 IQEMELSIN-RITEL-----PERL--PSALQSLDLFHN-KIS-CLPENLPEELRYLSVYDNSIRTLPAHL--PSGITHLN  310 (754)
T ss_pred             ccEEECcCC-ccCcC-----ChhH--hCCCCEEECcCC-ccC-ccccccCCCCcEEECCCCccccCcccc--hhhHHHHH
Confidence            999999985 44443     2222  347899999866 776 6676543 6777777665321  1001  12455555


Q ss_pred             ecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccC
Q 048826          187 IYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSC  266 (725)
Q Consensus       187 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  266 (725)
                      +++|....                                                    .+..   ..++|+.|++++|
T Consensus       311 Ls~N~Lt~----------------------------------------------------LP~~---l~~sL~~L~Ls~N  335 (754)
T PRK15370        311 VQSNSLTA----------------------------------------------------LPET---LPPGLKTLEAGEN  335 (754)
T ss_pred             hcCCcccc----------------------------------------------------CCcc---ccccceeccccCC
Confidence            55543221                                                    1111   1245666666664


Q ss_pred             CCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeecc
Q 048826          267 PKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFREC  346 (725)
Q Consensus       267 ~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~  346 (725)
                       .++.+|..           ++++|+.|++++|.+ ..+|..+  .++|++|++++|. ++.+|.. ...+|+.|++++|
T Consensus       336 -~Lt~LP~~-----------l~~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~-l~~sL~~LdLs~N  398 (754)
T PRK15370        336 -ALTSLPAS-----------LPPELQVLDVSKNQI-TVLPETL--PPTITTLDVSRNA-LTNLPEN-LPAALQIMQASRN  398 (754)
T ss_pred             -ccccCChh-----------hcCcccEEECCCCCC-CcCChhh--cCCcCEEECCCCc-CCCCCHh-HHHHHHHHhhccC
Confidence             34444422           125677777777665 3455433  2467777777664 3444321 2345667777766


Q ss_pred             Cccccccccccc--CCCCcccEEEeeccC
Q 048826          347 DALKLLPEAWMS--DTNSSLEILSIWVCH  373 (725)
Q Consensus       347 ~~~~~~~~~~~~--~~~~~L~~L~l~~~~  373 (725)
                      . +..+|.....  ...+.+..|++.+|+
T Consensus       399 ~-L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        399 N-LVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             C-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence            5 3444443211  123566777777765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.25  E-value=1.5e-13  Score=118.30  Aligned_cols=159  Identities=23%  Similarity=0.349  Sum_probs=128.5

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      .+++|.+++|+. ..+|+.+..+.+|+.|++++ +.++++|..+..++.|+.|+++- +.+..+|.+++.+|.|+.||+.
T Consensus        34 ~ITrLtLSHNKl-~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKL-TVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCce-eecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhcc
Confidence            588889999854 45666788899999999988 67888999999999999999987 5678899999999999999999


Q ss_pred             cccCc-cccccccCCCCCcceeecCCCCCCCCc-ccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCC
Q 048826          535 DCKRL-EALPKGLHNLTSLQQLTIGKGGELPSL-EEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCD  612 (725)
Q Consensus       535 ~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  612 (725)
                      +|+.. ..+|..|..+..|+.|++++|+ .+.+ +..+.+++|+.|.+++|..++     .+..++.++.|++|+|.+  
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~-----lpkeig~lt~lrelhiqg--  182 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLS-----LPKEIGDLTRLRELHIQG--  182 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhh-----CcHHHHHHHHHHHHhccc--
Confidence            98744 4678888889999999999984 3333 346677899999999987653     235677888999999988  


Q ss_pred             CCCccCCCCCcc
Q 048826          613 DDMVSFPPEPED  624 (725)
Q Consensus       613 ~~~~~l~~~~~~  624 (725)
                      +.+..+|++++.
T Consensus       183 nrl~vlppel~~  194 (264)
T KOG0617|consen  183 NRLTVLPPELAN  194 (264)
T ss_pred             ceeeecChhhhh
Confidence            677777776653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.22  E-value=2.1e-13  Score=132.79  Aligned_cols=196  Identities=13%  Similarity=0.115  Sum_probs=97.4

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccc-cccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKIL-PSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      +|++|+|++|.+...-..+|.....++.|.+.+| .+..+ ...+.++.+|+.|++++|+.....|..+..+.+|.+|.+
T Consensus       275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             cceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence            5666666666666666666666666666666663 33333 233455666666666665555555555666666666666


Q ss_pred             ccccCcccc-ccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHH--hh------ccccccccCCCc
Q 048826          534 LDCKRLEAL-PKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSM--IE------RGRGFHRFSSLR  604 (725)
Q Consensus       534 ~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~------~~~~~~~l~~L~  604 (725)
                      -.|+..-.- -.+++.       .+.+.. ....+..+.+..++.+.+++...-...-  ++      .+.....++-+.
T Consensus       354 ~~Np~~CnC~l~wl~~-------Wlr~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~  425 (498)
T KOG4237|consen  354 LSNPFNCNCRLAWLGE-------WLRKKS-VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLD  425 (498)
T ss_pred             ccCcccCccchHHHHH-------HHhhCC-CCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhh
Confidence            655521100 000000       000001 1111223334455566665543211000  00      001111222222


Q ss_pred             EEEeecCC-CCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCC
Q 048826          605 RLTIINCD-DDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPE  677 (725)
Q Consensus       605 ~L~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~  677 (725)
                      .  +..|. ..+..+|..+           +....++++.+ +.++.+|.+  .+.+| .++++++ .+..+..
T Consensus       426 t--VvRcSnk~lk~lp~~i-----------P~d~telyl~g-n~~~~vp~~--~~~~l-~~dls~n-~i~~Lsn  481 (498)
T KOG4237|consen  426 T--VVRCSNKLLKLLPRGI-----------PVDVTELYLDG-NAITSVPDE--LLRSL-LLDLSNN-RISSLSN  481 (498)
T ss_pred             h--hHhhcccchhhcCCCC-----------CchhHHHhccc-chhcccCHH--HHhhh-hcccccC-ceehhhc
Confidence            2  22222 3466666654           56788889988 568888863  66677 7788774 3444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.22  E-value=3.2e-11  Score=134.87  Aligned_cols=223  Identities=21%  Similarity=0.295  Sum_probs=140.0

Q ss_pred             CCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccccc
Q 048826          418 SLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSG  497 (725)
Q Consensus       418 ~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~  497 (725)
                      +.++.|+++++ +++. ++...             +.+|+.|++++|.+. .+|..+.  ++|+.|++++|. +..+|..
T Consensus       199 ~~L~~L~Ls~N-~Lts-LP~~l-------------~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~-L~~LP~~  259 (754)
T PRK15370        199 EQITTLILDNN-ELKS-LPENL-------------QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINR-ITELPER  259 (754)
T ss_pred             cCCcEEEecCC-CCCc-CChhh-------------ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCc-cCcCChh
Confidence            46777777763 4444 22111             125888888887654 4454332  468888888754 4566665


Q ss_pred             ccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccc
Q 048826          498 LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHS  577 (725)
Q Consensus       498 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~  577 (725)
                      +.  ++|+.|++++| .+..+|..+.  ++|+.|++++|. ++.+|..+.  ++|+.|++++| .+..++. ..+++|+.
T Consensus       260 l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~  329 (754)
T PRK15370        260 LP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSN-SLTALPE-TLPPGLKT  329 (754)
T ss_pred             Hh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCC-ccccCCc-ccccccee
Confidence            53  57888888864 4556665443  478888888875 445665442  46788888887 3343432 23478888


Q ss_pred             eecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccC
Q 048826          578 LWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVD  657 (725)
Q Consensus       578 L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~  657 (725)
                      |++++|....  ++   ..+  .++|+.|++++|  .+..+|..           .+++|+.|++++| .+..+|..+. 
T Consensus       330 L~Ls~N~Lt~--LP---~~l--~~sL~~L~Ls~N--~L~~LP~~-----------lp~~L~~LdLs~N-~Lt~LP~~l~-  387 (754)
T PRK15370        330 LEAGENALTS--LP---ASL--PPELQVLDVSKN--QITVLPET-----------LPPTITTLDVSRN-ALTNLPENLP-  387 (754)
T ss_pred             ccccCCcccc--CC---hhh--cCcccEEECCCC--CCCcCChh-----------hcCCcCEEECCCC-cCCCCCHhHH-
Confidence            8888885431  21   112  258888888883  44556653           3468888888885 5777775432 


Q ss_pred             CcCCCeEeccCCCCCcccCCCC-----CcccccEEEecCCc
Q 048826          658 LQNLTSLYLLDCPKLRYFPEKG-----LPSSLLQLHIYRCP  693 (725)
Q Consensus       658 ~~~L~~L~l~~c~~l~~l~~~~-----~~~~L~~L~l~~c~  693 (725)
                       ..|+.|++++| ++..+|...     ..+.+..|++.++|
T Consensus       388 -~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        388 -AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             -HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence             46888888884 566666531     13667888888877

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.15  E-value=1.3e-12  Score=112.61  Aligned_cols=160  Identities=24%  Similarity=0.376  Sum_probs=110.1

Q ss_pred             hcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcc
Q 048826          474 LDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQ  553 (725)
Q Consensus       474 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  553 (725)
                      +..+.+.+.|.+++ +.++.+|+.+..+.+|+.|++.+ +.++++|..+.++++|+.|++.-|+ +...|.+|+++|.|+
T Consensus        29 Lf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence            33566788889999 67888899999999999999987 6789999999999999999998776 678899999999999


Q ss_pred             eeecCCCCCCCC-ccc-CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCccc
Q 048826          554 QLTIGKGGELPS-LEE-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTL  631 (725)
Q Consensus       554 ~L~l~~~~~l~~-~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~  631 (725)
                      .||+.+|.--+. .+. ...+..|+.|.+++|                              ..+.+|.+++        
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dn------------------------------dfe~lp~dvg--------  147 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDN------------------------------DFEILPPDVG--------  147 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCC------------------------------CcccCChhhh--------
Confidence            999998842221 111 112244444444444                              4445555543        


Q ss_pred             CCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCC
Q 048826          632 PLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPE  677 (725)
Q Consensus       632 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~  677 (725)
                       .+++|+.|.+.+ +.+-.+|..+..+..|++|.|.+ +.++.+|+
T Consensus       148 -~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp  190 (264)
T KOG0617|consen  148 -KLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP  190 (264)
T ss_pred             -hhcceeEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence             455556666665 34445565556666666666666 34444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.13  E-value=1.2e-12  Score=128.73  Aligned_cols=89  Identities=16%  Similarity=0.153  Sum_probs=38.8

Q ss_pred             CCcceEEEeccCCCCCCCC-cCCCCCCCccEEEEecCCCCCcCCC---CCCCCccceeeecCcccceeccccccCCCCCC
Q 048826           30 KNLKQFCISGYGGTKFPTW-LGDSSFSNLVILKFEDCGMCTTWPS---VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSST  105 (725)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~l~~---~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~  105 (725)
                      -.||.|.++|+......+. .....++++++|.+.+|..+++-.-   -..+++|++|++.+|..+++......+.    
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~----  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE----  213 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH----
Confidence            4555555555544332110 0112345555555555554443211   2345555555555555444433322221    


Q ss_pred             CCCCcceeeeccccccc
Q 048826          106 PFPCLETLRFEDMEEWE  122 (725)
Q Consensus       106 ~~~~L~~L~l~~~~~l~  122 (725)
                      +|++|++|.+++|+...
T Consensus       214 gC~kL~~lNlSwc~qi~  230 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQIS  230 (483)
T ss_pred             hhhhHHHhhhccCchhh
Confidence            14555555555544443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.10  E-value=1.6e-12  Score=127.93  Aligned_cols=285  Identities=19%  Similarity=0.241  Sum_probs=202.1

Q ss_pred             CCccEEEEecCCCCCcCC--C-CCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCC
Q 048826           55 SNLVILKFEDCGMCTTWP--S-VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQ  131 (725)
Q Consensus        55 ~~L~~L~l~~c~~l~~l~--~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  131 (725)
                      .-|+.|.+.||...+.=+  . ...+|++++|.+.+|..+++..-.-.+    ..+++|+.|.+..|+.+++..    .+
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~----Lk  209 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA----RYCRKLRHLNLHSCSSITDVS----LK  209 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH----HhcchhhhhhhcccchhHHHH----HH
Confidence            458999999997655443  3 578999999999999877665322112    338999999999999888765    34


Q ss_pred             CC-CCCCCccEEEeccCcCccc----ccCCCCCcceeeeeccChhh-----hhhccCCCcccEEEecCCCceeEcccccc
Q 048826          132 GV-EGFPKLRELHVIRCSKLQG----TFPEHLPALEMLAIEKCEEL-----LASITCLPALCKLKIYGCKKVVWRSSTDH  201 (725)
Q Consensus       132 ~~-~~l~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  201 (725)
                      .+ .+|++|+++.++.|+.+++    .+......++.+...+|...     ...-..++.+.++++.+|..++.....  
T Consensus       210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~--  287 (483)
T KOG4341|consen  210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW--  287 (483)
T ss_pred             HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH--
Confidence            34 7899999999999998886    34445566888878888855     223455677888888888766644321  


Q ss_pred             cCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHH
Q 048826          202 LGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQ  281 (725)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l  281 (725)
                                          .+......|+.|...++.+..+  .....+-....+|+.+.+..|..+++.       .+
T Consensus       288 --------------------~i~~~c~~lq~l~~s~~t~~~d--~~l~aLg~~~~~L~~l~l~~c~~fsd~-------~f  338 (483)
T KOG4341|consen  288 --------------------LIACGCHALQVLCYSSCTDITD--EVLWALGQHCHNLQVLELSGCQQFSDR-------GF  338 (483)
T ss_pred             --------------------HHhhhhhHhhhhcccCCCCCch--HHHHHHhcCCCceEEEeccccchhhhh-------hh
Confidence                                1122356677777777777555  233445567899999999999887663       35


Q ss_pred             hhhhhccCCccEEEEecccCcc--ccccccCCCCCCcEEEeecCCCccccCC------CCCCCCCceEEeeccCcccccc
Q 048826          282 QQLCELSCRLEYLRLRYCKGLV--KLPQSSLSLSSLREIEIYKCSSLVSFPE------VALPSKLKKIQFRECDALKLLP  353 (725)
Q Consensus       282 ~~l~~~~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~------~~~l~~L~~L~l~~~~~~~~~~  353 (725)
                      ..++.-.+.|+.|++.+|....  .+-..-.+++.|++|.+++|..+++-+.      ......|..+.+++|+.+.+..
T Consensus       339 t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~  418 (483)
T KOG4341|consen  339 TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT  418 (483)
T ss_pred             hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence            5666666899999999887644  2334445789999999999987766521      1236788999999998776544


Q ss_pred             cccccCCCCcccEEEeeccCCccccc
Q 048826          354 EAWMSDTNSSLEILSIWVCHSLTYLA  379 (725)
Q Consensus       354 ~~~~~~~~~~L~~L~l~~~~~l~~~~  379 (725)
                      .... ..++.|+.+++.+|..++.-+
T Consensus       419 Le~l-~~c~~Leri~l~~~q~vtk~~  443 (483)
T KOG4341|consen  419 LEHL-SICRNLERIELIDCQDVTKEA  443 (483)
T ss_pred             HHHH-hhCcccceeeeechhhhhhhh
Confidence            3322 245789999999987665443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.05  E-value=3e-11  Score=125.24  Aligned_cols=11  Identities=27%  Similarity=0.069  Sum_probs=6.4

Q ss_pred             cCCCeEeccCC
Q 048826          659 QNLTSLYLLDC  669 (725)
Q Consensus       659 ~~L~~L~l~~c  669 (725)
                      +.|+.|++++|
T Consensus       250 ~~L~~L~l~~n  260 (319)
T cd00116         250 ISLLTLSLSCN  260 (319)
T ss_pred             CCceEEEccCC
Confidence            45666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.00  E-value=5.1e-11  Score=123.54  Aligned_cols=211  Identities=19%  Similarity=0.117  Sum_probs=120.7

Q ss_pred             CccEEEEecccch------hhhhhhhcCCCCccEEEecCCCCcccccccccCCC---cccEEEeccCCCcc----ccCCC
Q 048826          455 SLKSLSVYGCSKL------ESIAERLDNNTSLEYINISNCENLKILPSGLHNLR---QLQEITIQRCGNLE----SFPEG  521 (725)
Q Consensus       455 ~L~~L~L~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~---~L~~L~l~~~~~~~----~~~~~  521 (725)
                      ++++++++++...      ..++..+..+++|+.|++++|......+..+..+.   +|++|++++|....    .+...
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~  131 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG  131 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence            4777777766544      23445566677888888887665443433333333   38888888765431    12222


Q ss_pred             CcCc-CcCceeeeccccCcc----ccccccCCCCCcceeecCCCCCCCC----cc-cCCCcccccceecccchhhHHHHh
Q 048826          522 GLLC-AKLTRLTILDCKRLE----ALPKGLHNLTSLQQLTIGKGGELPS----LE-EDGLPTNLHSLWIEDNMEIWKSMI  591 (725)
Q Consensus       522 ~~~l-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~----~~-~~~~~~~L~~L~l~~n~~~~~~~~  591 (725)
                      +..+ ++|+.|++++|....    .++..+..+++|++|++++|..-..    ++ .....++|+.|++++|........
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence            3344 678888888887542    2333456677888888888742211    10 011225888888888865432222


Q ss_pred             hccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccc----ccccccccCCcCCCeEecc
Q 048826          592 ERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNL----ERLSSSIVDLQNLTSLYLL  667 (725)
Q Consensus       592 ~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----~~i~~~~~~~~~L~~L~l~  667 (725)
                      .....+..+++|++|++++|......+..-...     .....+.|++|++++|...    ..+...+..+++|+.++++
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~-----~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~  286 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASA-----LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR  286 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCcCchHHHHHHHHH-----HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence            222446677888999988853221111000000     0002368999999886432    2333444566888899888


Q ss_pred             CCC
Q 048826          668 DCP  670 (725)
Q Consensus       668 ~c~  670 (725)
                      +|+
T Consensus       287 ~N~  289 (319)
T cd00116         287 GNK  289 (319)
T ss_pred             CCC
Confidence            864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.99  E-value=4.3e-10  Score=127.96  Aligned_cols=70  Identities=21%  Similarity=0.258  Sum_probs=38.3

Q ss_pred             hhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCc
Q 048826          247 SHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSL  326 (725)
Q Consensus       247 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~  326 (725)
                      +...+|..++.|++||+++|..+..+|..     ++.+    -+|++|+++++.+ ..+|.++++++.|.+|++..+...
T Consensus       562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~-----I~~L----i~LryL~L~~t~I-~~LP~~l~~Lk~L~~Lnl~~~~~l  631 (889)
T KOG4658|consen  562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSS-----IGEL----VHLRYLDLSDTGI-SHLPSGLGNLKKLIYLNLEVTGRL  631 (889)
T ss_pred             cCHHHHhhCcceEEEECCCCCccCcCChH-----Hhhh----hhhhcccccCCCc-cccchHHHHHHhhheecccccccc
Confidence            44445555666666666655555555543     4444    5555666655544 355555555555555555554433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.2e-09  Score=108.68  Aligned_cols=208  Identities=15%  Similarity=0.081  Sum_probs=126.4

Q ss_pred             CccEEEEecccchhhhh-hhhcCCCCccEEEecCCCCcc--cccccccCCCcccEEEeccCCCccccCC-CCcCcCcCce
Q 048826          455 SLKSLSVYGCSKLESIA-ERLDNNTSLEYINISNCENLK--ILPSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTR  530 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~  530 (725)
                      +|+.+.|+++....... .....|++++.||+++|-...  .+-.....+|+|+.|+++.|....-... .-..++.|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            36666666654332211 234456777777777743221  2223345577777777777543211110 1124567888


Q ss_pred             eeeccccCc-cccccccCCCCCcceeecCCCCCCC-CcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEe
Q 048826          531 LTILDCKRL-EALPKGLHNLTSLQQLTIGKGGELP-SLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI  608 (725)
Q Consensus       531 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l  608 (725)
                      |.+++|... +++-..+..+|+|+.|++..|..+. .......++.|++|+|++|+.+.....   .....++.|+.|.+
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---YKVGTLPGLNQLNL  278 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---cccccccchhhhhc
Confidence            888888754 2333345678899999998884322 223345568999999999987642211   34678889999999


Q ss_pred             ecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc--cccCCcCCCeEeccCCC
Q 048826          609 INCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS--SIVDLQNLTSLYLLDCP  670 (725)
Q Consensus       609 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~c~  670 (725)
                      +.|......+|+.-.    ......+++|++|.+..| .+..+++  .+..+++|+.|.+..++
T Consensus       279 s~tgi~si~~~d~~s----~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  279 SSTGIASIAEPDVES----LDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             cccCcchhcCCCccc----hhhhcccccceeeecccC-ccccccccchhhccchhhhhhccccc
Confidence            987655555555410    001126899999999995 4655543  44567788888766543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.73  E-value=3.8e-09  Score=120.34  Aligned_cols=230  Identities=23%  Similarity=0.243  Sum_probs=156.8

Q ss_pred             CccEEEEeccc--chhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          455 SLKSLSVYGCS--KLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       455 ~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      .|++|-+.++.  ........|..++.|++||+++|.....+|..++++-+|++|++++ ..+..+|.++..+.+|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheec
Confidence            58888888875  3444445577899999999999888999999999999999999998 45678899999999999999


Q ss_pred             eccccCccccccccCCCCCcceeecCCCCCCC---CcccCCCcccccceecccchhhHHHHhhccccccccCCCc----E
Q 048826          533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELP---SLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLR----R  605 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~----~  605 (725)
                      +..+.....+|.....+.+|++|.+.....-.   .+.....+.+|+.+.+......  ..    ..+..++.|.    .
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~--~~----e~l~~~~~L~~~~~~  698 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL--LL----EDLLGMTRLRSLLQS  698 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH--hH----hhhhhhHHHHHHhHh
Confidence            99888777777666779999999886653111   1122334466666666544330  11    1123333333    2


Q ss_pred             EEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-----cccC-CcCCCeEeccCCCCCcccCCCC
Q 048826          606 LTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-----SIVD-LQNLTSLYLLDCPKLRYFPEKG  679 (725)
Q Consensus       606 L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-----~~~~-~~~L~~L~l~~c~~l~~l~~~~  679 (725)
                      +.+.+  ......+...         ..+.+|+.|.+.+|...+....     .... |+++.++.+.+|...+.+....
T Consensus       699 l~~~~--~~~~~~~~~~---------~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~  767 (889)
T KOG4658|consen  699 LSIEG--CSKRTLISSL---------GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL  767 (889)
T ss_pred             hhhcc--cccceeeccc---------ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh
Confidence            22222  2222223222         3678999999999876532221     1122 7788888888888887777666


Q ss_pred             CcccccEEEecCCchhHHhhhcc
Q 048826          680 LPSSLLQLHIYRCPLIEEKCRKD  702 (725)
Q Consensus       680 ~~~~L~~L~l~~c~~l~~~~~~~  702 (725)
                      ++|+|+.|.+..|+.++++....
T Consensus       768 f~~~L~~l~l~~~~~~e~~i~~~  790 (889)
T KOG4658|consen  768 FAPHLTSLSLVSCRLLEDIIPKL  790 (889)
T ss_pred             ccCcccEEEEecccccccCCCHH
Confidence            78999999999998888765543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.64  E-value=8.4e-09  Score=93.78  Aligned_cols=140  Identities=20%  Similarity=0.260  Sum_probs=51.3

Q ss_pred             cCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCC
Q 048826           25 MLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSS  104 (725)
Q Consensus        25 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~  104 (725)
                      .+..+.++++|+|+++.+..+.. ++ ..+.+|+.|++++| .++.++.+..++.|+.|++++|. ++.++..+.     
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~Ie~-L~-~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~-----   84 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTIEN-LG-ATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGLD-----   84 (175)
T ss_dssp             ----------------------S----TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH-----
T ss_pred             ccccccccccccccccccccccc-hh-hhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccchH-----
Confidence            34455678999999999988753 43 14789999999998 89999889999999999999998 887754321     


Q ss_pred             CCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccE
Q 048826          105 TPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCK  184 (725)
Q Consensus       105 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~  184 (725)
                      ..+|+|++|.+++ +++.++..   ...+..+++|+.|++.++|--.  .+              ..-...+..+|+|+.
T Consensus        85 ~~lp~L~~L~L~~-N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~--~~--------------~YR~~vi~~lP~Lk~  144 (175)
T PF14580_consen   85 KNLPNLQELYLSN-NKISDLNE---LEPLSSLPKLRVLSLEGNPVCE--KK--------------NYRLFVIYKLPSLKV  144 (175)
T ss_dssp             HH-TT--EEE-TT-S---SCCC---CGGGGG-TT--EEE-TT-GGGG--ST--------------THHHHHHHH-TT-SE
T ss_pred             HhCCcCCEEECcC-CcCCChHH---hHHHHcCCCcceeeccCCcccc--hh--------------hHHHHHHHHcChhhe
Confidence            1289999999988 46666532   2334667788888887775321  11              011345667788888


Q ss_pred             EEecCCCce
Q 048826          185 LKIYGCKKV  193 (725)
Q Consensus       185 L~l~~~~~~  193 (725)
                      |+-......
T Consensus       145 LD~~~V~~~  153 (175)
T PF14580_consen  145 LDGQDVTEE  153 (175)
T ss_dssp             ETTEETTS-
T ss_pred             eCCEEccHH
Confidence            876654433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=8.2e-09  Score=102.77  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=17.2

Q ss_pred             CCccEEEEecccCccccc--cccCCCCCCcEEEeecC
Q 048826          289 CRLEYLRLRYCKGLVKLP--QSSLSLSSLREIEIYKC  323 (725)
Q Consensus       289 ~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~L~~~  323 (725)
                      .+|+...|+++.. ...+  .....|++++.|+|++|
T Consensus       121 kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~N  156 (505)
T KOG3207|consen  121 KKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRN  156 (505)
T ss_pred             HhhhheeecCccc-cccchhhhhhhCCcceeecchhh
Confidence            5666666666543 2222  13344555555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.58  E-value=3.2e-07  Score=93.75  Aligned_cols=94  Identities=30%  Similarity=0.554  Sum_probs=60.2

Q ss_pred             hcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcc
Q 048826          474 LDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQ  553 (725)
Q Consensus       474 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  553 (725)
                      +..+.+++.|++++| .++.+|.   -.++|++|.+++|..+..+|..+  .++|+.|++++|..+..+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence            445688888898887 6777762   23468888888888877777543  34788888888765555553      466


Q ss_pred             eeecCCCCCCCCcccCCCcccccceeccc
Q 048826          554 QLTIGKGGELPSLEEDGLPTNLHSLWIED  582 (725)
Q Consensus       554 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~  582 (725)
                      .|+++++. ...+  ...+++|++|.+.+
T Consensus       116 ~L~L~~n~-~~~L--~~LPssLk~L~I~~  141 (426)
T PRK15386        116 SLEIKGSA-TDSI--KNVPNGLTSLSINS  141 (426)
T ss_pred             eEEeCCCC-Cccc--ccCcchHhheeccc
Confidence            66665432 1111  23446677776644

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.42  E-value=1.2e-07  Score=89.71  Aligned_cols=126  Identities=24%  Similarity=0.278  Sum_probs=82.3

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      +.|+++++++|.+ ..+..++.-.|.++.|++++| .+..+ ..+..+++|..|++++| .+..+..+-..+.+.+.|.+
T Consensus       284 q~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N-~i~~v-~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLI-TQIDESVKLAPKLRRLILSQN-RIRTV-QNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccch-hhhhhhhhhccceeEEecccc-ceeee-hhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence            3488888888754 334456666788888888884 44444 23677788888888874 44444444455667788888


Q ss_pred             ccccCccccccccCCCCCcceeecCCCC--CCCCcccCCCcccccceecccchh
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGG--ELPSLEEDGLPTNLHSLWIEDNME  585 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~l~~~~~~~~~~~L~~L~l~~n~~  585 (725)
                      ++|. +..+ .++..+-+|..||+++|.  ++..+...+.+|-|+.+.+.+|+.
T Consensus       360 a~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  360 AQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            8775 3333 356677777888888773  233444566667777777777764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.40  E-value=1.4e-07  Score=85.84  Aligned_cols=85  Identities=25%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             CcCcCceeeeccccCcccccccc-CCCCCcceeecCCCC--CCCCcccCCCcccccceecccchhhHHHHhhcccccccc
Q 048826          524 LCAKLTRLTILDCKRLEALPKGL-HNLTSLQQLTIGKGG--ELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRF  600 (725)
Q Consensus       524 ~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~--~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l  600 (725)
                      .+++|+.|++++|.. +.+...+ ..+++|++|++++|.  .+..+.....+++|+.|++.+|+..... ......+..+
T Consensus        62 ~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~-~YR~~vi~~l  139 (175)
T PF14580_consen   62 GLPRLKTLDLSNNRI-SSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK-NYRLFVIYKL  139 (175)
T ss_dssp             --TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST-THHHHHHHH-
T ss_pred             ChhhhhhcccCCCCC-CccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh-hHHHHHHHHc
Confidence            344555555555542 2232222 235555555555552  1222223334466666666666543211 1112346678


Q ss_pred             CCCcEEEeec
Q 048826          601 SSLRRLTIIN  610 (725)
Q Consensus       601 ~~L~~L~l~~  610 (725)
                      |+|+.||-..
T Consensus       140 P~Lk~LD~~~  149 (175)
T PF14580_consen  140 PSLKVLDGQD  149 (175)
T ss_dssp             TT-SEETTEE
T ss_pred             ChhheeCCEE
Confidence            8888887655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.32  E-value=1e-07  Score=90.17  Aligned_cols=125  Identities=18%  Similarity=0.239  Sum_probs=65.2

Q ss_pred             cCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEE
Q 048826          527 KLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRL  606 (725)
Q Consensus       527 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L  606 (725)
                      .|+.+|+++|. ++.+...+.-.|.++.|+++.|. +..+.....+++|+.||+++|....  +.   .+-.++.|.+.|
T Consensus       285 ~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~Ls~--~~---Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  285 ELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNLLAE--CV---GWHLKLGNIKTL  357 (490)
T ss_pred             hhhhccccccc-hhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccchhHh--hh---hhHhhhcCEeee
Confidence            45555555554 33444444455555555555552 2222334444555555555553321  10   112245566666


Q ss_pred             EeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc--cccCCcCCCeEeccCCCC
Q 048826          607 TIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS--SIVDLQNLTSLYLLDCPK  671 (725)
Q Consensus       607 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~c~~  671 (725)
                      .+++  +.++.+..          +..+-+|+.|++++ +.|+.+..  ++.++|.|+.+.+.++|.
T Consensus       358 ~La~--N~iE~LSG----------L~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  358 KLAQ--NKIETLSG----------LRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             ehhh--hhHhhhhh----------hHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence            6665  33333321          12456677777777 45666543  567788888888887663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.30  E-value=7.2e-07  Score=95.27  Aligned_cols=173  Identities=25%  Similarity=0.326  Sum_probs=99.7

Q ss_pred             CCCccEEEecCCCCcccccccccCCC-cccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCccee
Q 048826          477 NTSLEYINISNCENLKILPSGLHNLR-QLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQL  555 (725)
Q Consensus       477 l~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  555 (725)
                      ++.++.|++.+ +.+..++.....+. +|+.|++++ +.+..+|.....+++|+.|++++|+ +.++|...+..+.|+.|
T Consensus       115 ~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhhe
Confidence            35666666665 44555555444453 677777766 3455555555666677777777766 44555544466677777


Q ss_pred             ecCCCCCCCCcccC-CCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCC
Q 048826          556 TIGKGGELPSLEED-GLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLP  634 (725)
Q Consensus       556 ~l~~~~~l~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~  634 (725)
                      ++++| .+..++.. ..+..|++|.+.+|+...     ....+..+.++..|.+.+  +....++...+         .+
T Consensus       192 ~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~--n~~~~~~~~~~---------~l  254 (394)
T COG4886         192 DLSGN-KISDLPPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSN--NKLEDLPESIG---------NL  254 (394)
T ss_pred             eccCC-ccccCchhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccccCC--ceeeeccchhc---------cc
Confidence            77776 34444433 344557777777774221     112344555555555444  33333333332         45


Q ss_pred             CCCcEEEeccCcccccccccccCCcCCCeEeccCCCC
Q 048826          635 ASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPK  671 (725)
Q Consensus       635 ~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~  671 (725)
                      ++++.|++++ +.+..++. +..+.+|+.|+++++..
T Consensus       255 ~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         255 SNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cccceecccc-cccccccc-ccccCccCEEeccCccc
Confidence            6677777777 45666665 56777777777777433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.28  E-value=4.9e-08  Score=100.46  Aligned_cols=191  Identities=20%  Similarity=0.226  Sum_probs=134.3

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD  535 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  535 (725)
                      -...+++.|. ..++|..+..|..|+.+.+.. +.+..+|..+.++..|..++++. +.+..+|..+..+| |+.|-+++
T Consensus        77 t~~aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   77 TVFADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec
Confidence            3556777764 445677777788888888877 56777888889999999999998 56777888877774 88888888


Q ss_pred             ccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCC
Q 048826          536 CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDM  615 (725)
Q Consensus       536 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  615 (725)
                      |+ ++.+|..++....|..|+.+.|....-.+..+.+.+|+.|.++.|+...     .+..+.. -.|..||++.  +.+
T Consensus       153 Nk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-----lp~El~~-LpLi~lDfSc--Nki  223 (722)
T KOG0532|consen  153 NK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-----LPEELCS-LPLIRLDFSC--NKI  223 (722)
T ss_pred             Cc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-----CCHHHhC-Cceeeeeccc--Cce
Confidence            76 7788988888889999999998655544556667888888888886552     1123332 2466677765  667


Q ss_pred             ccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccc---cCCcCCCeEeccCC
Q 048826          616 VSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSI---VDLQNLTSLYLLDC  669 (725)
Q Consensus       616 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~---~~~~~L~~L~l~~c  669 (725)
                      ..+|-.+.         .+..|++|.|.+|+ ++.-|..+   ....=-|.|++.-|
T Consensus       224 s~iPv~fr---------~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  224 SYLPVDFR---------KMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eecchhhh---------hhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence            77776653         56777777777765 55544322   12233456666666

>PLN03150 hypothetical protein; Provisional

Probab=98.17  E-value=3e-06  Score=94.97  Aligned_cols=109  Identities=16%  Similarity=0.122  Sum_probs=90.4

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD  535 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  535 (725)
                      ++.|+|++|...+.+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            78889999888888888899999999999999777778888888899999999999887778888888889999999999


Q ss_pred             ccCccccccccCCC-CCcceeecCCCCCCC
Q 048826          536 CKRLEALPKGLHNL-TSLQQLTIGKGGELP  564 (725)
Q Consensus       536 ~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~  564 (725)
                      |.....+|..+... .++..+++.+|..+.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcccc
Confidence            98777888777543 466778888775443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=4.2e-08  Score=92.84  Aligned_cols=111  Identities=12%  Similarity=0.087  Sum_probs=52.3

Q ss_pred             CCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcccccc--ccCCCCCcceeecCCCCCCCCcc---cCCCccc
Q 048826          500 NLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPK--GLHNLTSLQQLTIGKGGELPSLE---EDGLPTN  574 (725)
Q Consensus       500 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~  574 (725)
                      .|.+|+.|.+.+......+...+..-.+|+.|+++.|...++...  -+.+|+.|.+|++++|.......   ....-++
T Consensus       208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence            344445555444433333333333333555555555554433221  23667777777777774332211   1223367


Q ss_pred             ccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826          575 LHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC  611 (725)
Q Consensus       575 L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~  611 (725)
                      |..|+++++...-.. .........+++|.+||+++|
T Consensus       288 l~~LNlsG~rrnl~~-sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQK-SHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             hhhhhhhhhHhhhhh-hHHHHHHHhCCceeeeccccc
Confidence            777777777542100 000012334555555555553

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.15  E-value=1.1e-05  Score=82.78  Aligned_cols=39  Identities=33%  Similarity=0.711  Sum_probs=20.0

Q ss_pred             CccEEEecCCCCcccccccccCCCcccEEEeccCCCccccC
Q 048826          479 SLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFP  519 (725)
Q Consensus       479 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~  519 (725)
                      +|+.|.+++|..+..+|..+  .++|+.|++++|..+..+|
T Consensus        73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence            45555555555555554433  2455555555554444444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.12  E-value=2.7e-07  Score=89.68  Aligned_cols=230  Identities=16%  Similarity=0.101  Sum_probs=124.3

Q ss_pred             CccEEEEecccchhh----hhhhhcCCCCccEEEecCCCCcc----cccc-------cccCCCcccEEEeccCCCccccC
Q 048826          455 SLKSLSVYGCSKLES----IAERLDNNTSLEYINISNCENLK----ILPS-------GLHNLRQLQEITIQRCGNLESFP  519 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----~l~~-------~~~~l~~L~~L~l~~~~~~~~~~  519 (725)
                      +++.++|++|.+...    +...+.+.++|+..++++- ...    .+|+       .+..++.|++++|++|-.-...+
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            588899998877654    3445566778888888762 111    2222       33456788888888764332222


Q ss_pred             C----CCcCcCcCceeeeccccCccc-------------cccccCCCCCcceeecCCCCCCCCccc------CCCccccc
Q 048826          520 E----GGLLCAKLTRLTILDCKRLEA-------------LPKGLHNLTSLQQLTIGKGGELPSLEE------DGLPTNLH  576 (725)
Q Consensus       520 ~----~~~~l~~L~~L~l~~~~~~~~-------------~~~~~~~l~~L~~L~l~~~~~l~~~~~------~~~~~~L~  576 (725)
                      .    .+.++.+|++|.+.+|..-..             ......+-+.|+.+..++|. +.+.+.      ....+.|+
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccc
Confidence            2    234566778887777763221             11123455677777777663 221110      11226777


Q ss_pred             ceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc----
Q 048826          577 SLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS----  652 (725)
Q Consensus       577 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~----  652 (725)
                      ++.+..|.+....+......+..+++|+.|++.++.-...      +....-..++.+++|++|++++|..-..-.    
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e------gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE------GSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH------HHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            7777777554333322224566777777777777321110      000011122456678888887775332211    


Q ss_pred             ccc-cCCcCCCeEeccCCCCCcccCCC------CCcccccEEEecCCc
Q 048826          653 SSI-VDLQNLTSLYLLDCPKLRYFPEK------GLPSSLLQLHIYRCP  693 (725)
Q Consensus       653 ~~~-~~~~~L~~L~l~~c~~l~~l~~~------~~~~~L~~L~l~~c~  693 (725)
                      ..+ ..+|+|+.|.+.+|. +++-...      .-.|.|++|++++|.
T Consensus       263 ~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            111 346778888877753 2221110      114678888887765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.04  E-value=5.1e-06  Score=88.70  Aligned_cols=190  Identities=24%  Similarity=0.288  Sum_probs=136.3

Q ss_pred             cEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcC-cCceeeeccccCccccccccCCCCCcceeecCC
Q 048826          481 EYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCA-KLTRLTILDCKRLEALPKGLHNLTSLQQLTIGK  559 (725)
Q Consensus       481 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  559 (725)
                      ..++...+...... ..+..++.++.|++.+ ..+..++.....+. +|+.|++++|. ...+|..+..++.|+.|++++
T Consensus        96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             ceeeccccccccCc-hhhhcccceeEEecCC-cccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCC
Confidence            34666654332322 3345568899999998 55677776666774 99999999998 556766789999999999999


Q ss_pred             CCCCCCcccCC-CcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCc
Q 048826          560 GGELPSLEEDG-LPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLT  638 (725)
Q Consensus       560 ~~~l~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~  638 (725)
                      | .+..++... ..+.|+.|++++|....  ++   .......+|++|.+++  +.....+....         .+.++.
T Consensus       173 N-~l~~l~~~~~~~~~L~~L~ls~N~i~~--l~---~~~~~~~~L~~l~~~~--N~~~~~~~~~~---------~~~~l~  235 (394)
T COG4886         173 N-DLSDLPKLLSNLSNLNNLDLSGNKISD--LP---PEIELLSALEELDLSN--NSIIELLSSLS---------NLKNLS  235 (394)
T ss_pred             c-hhhhhhhhhhhhhhhhheeccCCcccc--Cc---hhhhhhhhhhhhhhcC--Ccceecchhhh---------hccccc
Confidence            9 455555543 67999999999997542  11   1223455699999998  32334444332         567888


Q ss_pred             EEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEecCC
Q 048826          639 SLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRC  692 (725)
Q Consensus       639 ~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c  692 (725)
                      .+.+.+ +.+..++..+..+++++.|++++ +.+..++..+-..+++.|++.+.
T Consensus       236 ~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         236 GLELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             ccccCC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCc
Confidence            888777 55666677778899999999999 56777777555688999999874

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=3.1e-07  Score=87.12  Aligned_cols=110  Identities=13%  Similarity=0.141  Sum_probs=68.0

Q ss_pred             CCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC---C
Q 048826          256 CSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE---V  332 (725)
Q Consensus       256 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~---~  332 (725)
                      ..|++|||+. ..++.       ..+..+..-+.+|+.|.|.+++....+...++.=.+|+.|+|++|..++....   +
T Consensus       185 sRlq~lDLS~-s~it~-------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~  256 (419)
T KOG2120|consen  185 SRLQHLDLSN-SVITV-------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLL  256 (419)
T ss_pred             hhhHHhhcch-hheeH-------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHH
Confidence            4678888877 34443       22333333447888888888877777777777777888888888876655432   2


Q ss_pred             CCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccC
Q 048826          333 ALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCH  373 (725)
Q Consensus       333 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  373 (725)
                      ..++.|..|+++-|.............--+.|..|+++++.
T Consensus       257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r  297 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR  297 (419)
T ss_pred             HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence            23667777777777654444333322333566666666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.99  E-value=7.7e-06  Score=60.74  Aligned_cols=57  Identities=25%  Similarity=0.370  Sum_probs=30.8

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccc-cccccCCCcccEEEeccC
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKIL-PSGLHNLRQLQEITIQRC  512 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~  512 (725)
                      +|++|++++|.+....+..|..+++|++|++++|. +..+ +..+.++++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence            36666666665544444555556666666666533 3333 334555666666666554

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.94  E-value=1e-06  Score=85.70  Aligned_cols=190  Identities=17%  Similarity=0.201  Sum_probs=116.7

Q ss_pred             hhhcCCCCccEEEecCCCCcccc----cccccCCCcccEEEeccCCCcccc-------------CCCCcCcCcCceeeec
Q 048826          472 ERLDNNTSLEYINISNCENLKIL----PSGLHNLRQLQEITIQRCGNLESF-------------PEGGLLCAKLTRLTIL  534 (725)
Q Consensus       472 ~~~~~l~~L~~L~l~~~~~~~~l----~~~~~~l~~L~~L~l~~~~~~~~~-------------~~~~~~l~~L~~L~l~  534 (725)
                      +.+..+++|+++++|+|-.-..-    -..+.++..|++|.+.+|..-..-             ......-+.|++++..
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            34445566777777664322211    122345667777777766432111             1123345688888888


Q ss_pred             cccCc----cccccccCCCCCcceeecCCCCCCCC-c----ccCCCcccccceecccchhhHHHHhhccccccccCCCcE
Q 048826          535 DCKRL----EALPKGLHNLTSLQQLTIGKGGELPS-L----EEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRR  605 (725)
Q Consensus       535 ~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l~~-~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~  605 (725)
                      .|+.-    +.+...+...+.|+.+.+..|..-.. +    .....+++|+.||+++|-............+..+++|++
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            87632    12333567778999999988854332 1    123457999999999997665444333456778899999


Q ss_pred             EEeecCCC---CCccCCCCCcccccCcccCCCCCCcEEEeccCccccc-----ccccccCCcCCCeEeccCCC
Q 048826          606 LTIINCDD---DMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLER-----LSSSIVDLQNLTSLYLLDCP  670 (725)
Q Consensus       606 L~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----i~~~~~~~~~L~~L~l~~c~  670 (725)
                      |++.+|..   +-..+-....        ...|+|+.|.+.+|. ++.     +...+..-|.|++|++++|.
T Consensus       246 l~l~dcll~~~Ga~a~~~al~--------~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALK--------ESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             ecccccccccccHHHHHHHHh--------ccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            99999732   1122222221        246899999999954 442     22334568999999999974

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.90  E-value=1.9e-05  Score=58.56  Aligned_cols=57  Identities=18%  Similarity=0.302  Sum_probs=25.4

Q ss_pred             cccEEEeccCCCccccC-CCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCC
Q 048826          503 QLQEITIQRCGNLESFP-EGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKG  560 (725)
Q Consensus       503 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  560 (725)
                      +|++|++++| .+..+| ..+..+++|++|++++|.....-+..|..+++|++|++++|
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            3444455443 333333 23344455555555544432222234455555555555554

...

>PLN03150 hypothetical protein; Provisional

Probab=97.79  E-value=2.7e-05  Score=87.31  Aligned_cols=84  Identities=20%  Similarity=0.232  Sum_probs=66.9

Q ss_pred             CccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecC
Q 048826          479 SLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIG  558 (725)
Q Consensus       479 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  558 (725)
                      .++.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36778888876666777778888888888888877767788777888888888888888777788888888888888888


Q ss_pred             CCCC
Q 048826          559 KGGE  562 (725)
Q Consensus       559 ~~~~  562 (725)
                      +|..
T Consensus       499 ~N~l  502 (623)
T PLN03150        499 GNSL  502 (623)
T ss_pred             CCcc
Confidence            8753

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.79  E-value=4.6e-06  Score=89.19  Aligned_cols=123  Identities=20%  Similarity=0.205  Sum_probs=61.6

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD  535 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  535 (725)
                      ++.+.++.+.+.. +...+..+.+|+.|++.+ +.+..+...+..+++|++|++++|. ++.+. ....++.|+.|++++
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccc-cchhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheecc
Confidence            4444444443322 222345556666666666 3444443334556666666666643 33332 223344566666666


Q ss_pred             ccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchh
Q 048826          536 CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNME  585 (725)
Q Consensus       536 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~  585 (725)
                      |.. ..+ ..+..++.|+.+++++|.. ..+..  ...+.+++.+++.+|..
T Consensus       150 N~i-~~~-~~~~~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  150 NLI-SDI-SGLESLKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             Ccc-hhc-cCCccchhhhcccCCcchh-hhhhhhhhhhccchHHHhccCCch
Confidence            652 222 2344466666666666632 22222  24456666666666644

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.63  E-value=6.9e-06  Score=85.07  Aligned_cols=144  Identities=28%  Similarity=0.372  Sum_probs=90.7

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD  535 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  535 (725)
                      |..+.+..|. ...+|..+..+..|+.++++. +.+..+|..+..++ |+.|.+++ +.++.+|..++..+.|..||.+.
T Consensus       100 Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~  175 (722)
T KOG0532|consen  100 LESLILYHNC-IRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK  175 (722)
T ss_pred             HHHHHHHhcc-ceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhh
Confidence            4445554442 334555666777777777776 45566666665544 67777766 55667777666777777777777


Q ss_pred             ccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          536 CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       536 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      |. +..+|..+..+.+|+.|.+..|....-.++.. .-.|.+||+++|+...     .|..|..|++|++|.+.+
T Consensus       176 ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  176 NE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             hh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee-----cchhhhhhhhheeeeecc
Confidence            76 45667777777777777777774433222233 3567777777775432     234577777777777776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.51  E-value=0.0001  Score=50.03  Aligned_cols=39  Identities=26%  Similarity=0.435  Sum_probs=29.5

Q ss_pred             CCccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceecc
Q 048826           55 SNLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLG   95 (725)
Q Consensus        55 ~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~   95 (725)
                      ++|++|++++| .++++|+ +++|++|+.|++++|. +++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence            47888888887 7888888 8888888888888886 55543

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.42  E-value=0.00026  Score=64.05  Aligned_cols=104  Identities=16%  Similarity=0.267  Sum_probs=75.7

Q ss_pred             cceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCCCcc
Q 048826           32 LKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLE  111 (725)
Q Consensus        32 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~  111 (725)
                      =++++++++++..+-. ++ ....+...++++++ .+..++.+.+++.|..|.+++|. |..|.+....     .+|+|+
T Consensus        21 e~e~~LR~lkip~ien-lg-~~~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nNr-It~I~p~L~~-----~~p~l~   91 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN-LG-ATLDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNNR-ITRIDPDLDT-----FLPNLK   91 (233)
T ss_pred             ccccccccccccchhh-cc-ccccccceeccccc-chhhcccCCCccccceEEecCCc-ceeeccchhh-----hccccc
Confidence            3556677776644322 21 13567888999997 88899889999999999999998 8888765432     378999


Q ss_pred             eeeecccccccccccCCCCCCCCCCCCccEEEeccCc
Q 048826          112 TLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCS  148 (725)
Q Consensus       112 ~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~  148 (725)
                      +|.+.+. ++.+...   ...+..||+|++|.+-+++
T Consensus        92 ~L~LtnN-si~~l~d---l~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   92 TLILTNN-SIQELGD---LDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             eEEecCc-chhhhhh---cchhccCCccceeeecCCc
Confidence            9999984 4444322   3445778899999988775

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.39  E-value=7.6e-06  Score=87.07  Aligned_cols=124  Identities=19%  Similarity=0.135  Sum_probs=76.2

Q ss_pred             eeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcccccc-ccCC
Q 048826          233 LEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLS  311 (725)
Q Consensus       233 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~~~~  311 (725)
                      |...+|+.|..  ...+..+.-++.|+.|+|+++ +++..      +.+..+    ++|++|||++|.. ..+|. +...
T Consensus       166 L~~a~fsyN~L--~~mD~SLqll~ale~LnLshN-k~~~v------~~Lr~l----~~LkhLDlsyN~L-~~vp~l~~~g  231 (1096)
T KOG1859|consen  166 LATASFSYNRL--VLMDESLQLLPALESLNLSHN-KFTKV------DNLRRL----PKLKHLDLSYNCL-RHVPQLSMVG  231 (1096)
T ss_pred             HhhhhcchhhH--HhHHHHHHHHHHhhhhccchh-hhhhh------HHHHhc----ccccccccccchh-ccccccchhh
Confidence            33444555554  344555677788888888885 33332      123333    6888999988876 44554 3344


Q ss_pred             CCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccC
Q 048826          312 LSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCH  373 (725)
Q Consensus       312 l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  373 (725)
                      ++ |+.|.+++|. ++.+-....+.+|+.|++++|-..+ ..+...-..+..|+.|++.+|+
T Consensus       232 c~-L~~L~lrnN~-l~tL~gie~LksL~~LDlsyNll~~-hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  232 CK-LQLLNLRNNA-LTTLRGIENLKSLYGLDLSYNLLSE-HSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hh-heeeeecccH-HHhhhhHHhhhhhhccchhHhhhhc-chhhhHHHHHHHHHHHhhcCCc
Confidence            44 8888888864 6777667778888888888775222 1111111123567888887775

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.0003  Score=67.30  Aligned_cols=190  Identities=13%  Similarity=0.098  Sum_probs=99.4

Q ss_pred             CCCCccEEEecCCCCcc--cccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCc-cccccccCCCCCc
Q 048826          476 NNTSLEYINISNCENLK--ILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRL-EALPKGLHNLTSL  552 (725)
Q Consensus       476 ~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L  552 (725)
                      .++.++.+|+.+|....  ++...+.++|.|+.|+++.|+.-..|........+|++|-+.+.... +.....+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            34556666666533221  22333455666666666665543333322234446666666554422 1122234556677


Q ss_pred             ceeecCCCC--CC--CCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccC
Q 048826          553 QQLTIGKGG--EL--PSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLG  628 (725)
Q Consensus       553 ~~L~l~~~~--~l--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~  628 (725)
                      +.|.++.|.  ++  ..-....+-+.+++|....|...  .+.......+.++++..+.+..|+....+-....      
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~--~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s------  220 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ--LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS------  220 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHH--HHHHHHhHHhhcccchheeeecCcccchhhcccC------
Confidence            777777662  11  11011123367777888777654  2222223455678888888877432222211111      


Q ss_pred             cccCCCCCCcEEEeccCcccccccc--cccCCcCCCeEeccCCCCCcccCC
Q 048826          629 TTLPLPASLTSLWISNFPNLERLSS--SIVDLQNLTSLYLLDCPKLRYFPE  677 (725)
Q Consensus       629 ~~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~c~~l~~l~~  677 (725)
                         ..+|.+-.|.++. +++....+  ++..|+.|..|.+++.|....+..
T Consensus       221 ---e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  221 ---EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             ---CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence               2345566677777 44555432  456788888888888877655543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.32  E-value=8.6e-06  Score=86.65  Aligned_cols=125  Identities=26%  Similarity=0.314  Sum_probs=91.8

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCC-CcCcCcCceeee
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEG-GLLCAKLTRLTI  533 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l  533 (725)
                      .|...++++| .+..+-.++.-++.|+.|++++| .++.+ ..+..++.|++||+++| .++.+|.. ...| .|..|.+
T Consensus       165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshN-k~~~v-~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHN-KFTKV-DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNL  239 (1096)
T ss_pred             hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchh-hhhhh-HHHHhcccccccccccc-hhccccccchhhh-hheeeee
Confidence            4777777776 45555667778899999999995 45555 36778999999999995 45666653 3344 5999999


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCC--CCCcccCCCcccccceecccchhh
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGE--LPSLEEDGLPTNLHSLWIEDNMEI  586 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--l~~~~~~~~~~~L~~L~l~~n~~~  586 (725)
                      ++|. ++.+ .++.++++|+.||+++|-.  ...+.....+..|+.|.|.+|+.-
T Consensus       240 rnN~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9997 4444 4678999999999999822  122333445689999999999753

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.00023  Score=68.12  Aligned_cols=60  Identities=10%  Similarity=-0.024  Sum_probs=35.0

Q ss_pred             ccCCccEEEEecccCcc--ccccccCCCCCCcEEEeecCCCccccCCCC-CCCCCceEEeecc
Q 048826          287 LSCRLEYLRLRYCKGLV--KLPQSSLSLSSLREIEIYKCSSLVSFPEVA-LPSKLKKIQFREC  346 (725)
Q Consensus       287 ~~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~l~~~  346 (725)
                      ..+.++.|||.+|.+..  .+...+.++|.|+.|+|+.|+.-..+.... -..+|++|-+.|.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT  131 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT  131 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence            34677777777776643  444455677777777777765333333222 2456666666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.21  E-value=2.9e-05  Score=85.54  Aligned_cols=118  Identities=21%  Similarity=0.272  Sum_probs=54.0

Q ss_pred             hhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecc-cCccccc----cccCCCCCCcEEEeecC
Q 048826          249 NELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYC-KGLVKLP----QSSLSLSSLREIEIYKC  323 (725)
Q Consensus       249 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~----~~~~~l~~L~~L~L~~~  323 (725)
                      ..+...++.|+.+.+.+|..+....       +..+....++|+.|+++++ ......+    .....+++|+.|+++++
T Consensus       181 ~~l~~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~  253 (482)
T KOG1947|consen  181 LRLLSSCPLLKRLSLSGCSKITDDS-------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC  253 (482)
T ss_pred             HHHHhhCchhhHhhhcccccCChhh-------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence            3344456777777777776665422       2222223367777777663 2211111    12334456666666665


Q ss_pred             CCccccCC---CCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccC
Q 048826          324 SSLVSFPE---VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCH  373 (725)
Q Consensus       324 ~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  373 (725)
                      ..+++..-   ...+++|++|.+.+|..++..........++.|++|++.+|.
T Consensus       254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            53333221   111445555555555433322222222233444444444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.14  E-value=0.00032  Score=47.58  Aligned_cols=42  Identities=24%  Similarity=0.320  Sum_probs=34.6

Q ss_pred             CCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCC
Q 048826           30 KNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSV   74 (725)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~   74 (725)
                      ++|++|+++++++..+|..+..  +++|+.|++++| .+++++.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~--l~~L~~L~l~~N-~i~~i~~l   42 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSN--LPNLETLNLSNN-PISDISPL   42 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTT--CTTSSEEEETSS-CCSBEGGG
T ss_pred             CcceEEEccCCCCcccCchHhC--CCCCCEEEecCC-CCCCCcCC
Confidence            5899999999999999886765  999999999998 78777654

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.10  E-value=9.2e-05  Score=81.62  Aligned_cols=60  Identities=25%  Similarity=0.517  Sum_probs=27.3

Q ss_pred             CCCCCccEEEeccCcCcccc----cCCCCCcceeeeeccChhh-----hhhccCCCcccEEEecCCCce
Q 048826          134 EGFPKLRELHVIRCSKLQGT----FPEHLPALEMLAIEKCEEL-----LASITCLPALCKLKIYGCKKV  193 (725)
Q Consensus       134 ~~l~~L~~L~l~~c~~l~~~----~p~~l~~L~~L~l~~~~~l-----~~~~~~~~~L~~L~l~~~~~~  193 (725)
                      ..+.+|+.|+++.|..+++.    +...+++|+.|.+.+|..+     ......++.|++|++++|...
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            33456666666655433211    1111334444444433321     233445566666666666533

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.08  E-value=0.00014  Score=77.80  Aligned_cols=100  Identities=22%  Similarity=0.327  Sum_probs=62.5

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      +|..|++.+|.+... ...+..+++|++|++++ +.++.+ ..+..++.|+.|++.+|. +..+. .+..+++|+.++++
T Consensus        96 ~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   96 SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSF-NKITKL-EGLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLS  170 (414)
T ss_pred             ceeeeeccccchhhc-ccchhhhhcchheeccc-cccccc-cchhhccchhhheeccCc-chhcc-CCccchhhhcccCC
Confidence            477777777654433 22256677888888887 445544 235566678888888754 34443 23336678888888


Q ss_pred             cccCccccccc-cCCCCCcceeecCCC
Q 048826          535 DCKRLEALPKG-LHNLTSLQQLTIGKG  560 (725)
Q Consensus       535 ~~~~~~~~~~~-~~~l~~L~~L~l~~~  560 (725)
                      +|.... +... ...+.+++.+++++|
T Consensus       171 ~n~i~~-ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  171 YNRIVD-IENDELSELISLEELDLGGN  196 (414)
T ss_pred             cchhhh-hhhhhhhhccchHHHhccCC
Confidence            877433 3221 466777777888777

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.05  E-value=0.00029  Score=78.90  Aligned_cols=38  Identities=21%  Similarity=0.207  Sum_probs=17.5

Q ss_pred             hhhhccCCccEEEEecccCccccccccCCCCCCcEEEeec
Q 048826          283 QLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYK  322 (725)
Q Consensus       283 ~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~  322 (725)
                      .+..-+|+|..||++++++. .+ .+++++++|++|.+.+
T Consensus       167 ~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  167 QLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRN  204 (699)
T ss_pred             HHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccC
Confidence            33333355555555554432 22 3445555555555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.83  E-value=0.00047  Score=65.16  Aligned_cols=141  Identities=17%  Similarity=0.159  Sum_probs=69.7

Q ss_pred             CcCcCcCceeeeccccCcccccc----ccCCCCCcceeecCCCCCCCCcc---------------cCCCcccccceeccc
Q 048826          522 GLLCAKLTRLTILDCKRLEALPK----GLHNLTSLQQLTIGKGGELPSLE---------------EDGLPTNLHSLWIED  582 (725)
Q Consensus       522 ~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~l~~~~---------------~~~~~~~L~~L~l~~  582 (725)
                      ...||.|+.+++++|......|.    .+++-..|++|.+++|.. ..+.               ....-|.|+++....
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            34555666666666654433333    234556666666666631 1110               011226777777777


Q ss_pred             chhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccc-----cccccC
Q 048826          583 NMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERL-----SSSIVD  657 (725)
Q Consensus       583 n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-----~~~~~~  657 (725)
                      |+..+.+.......+..-.+|+.+.+..+...    |.+++....+. +....+|+.|++.+| .++..     ...+.+
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIr----pegv~~L~~~g-l~y~~~LevLDlqDN-tft~~gS~~La~al~~  240 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIR----PEGVTMLAFLG-LFYSHSLEVLDLQDN-TFTLEGSRYLADALCE  240 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcC----cchhHHHHHHH-HHHhCcceeeecccc-chhhhhHHHHHHHhcc
Confidence            76554333222223444467777777764221    22111111111 124567777777774 33322     122344


Q ss_pred             CcCCCeEeccCC
Q 048826          658 LQNLTSLYLLDC  669 (725)
Q Consensus       658 ~~~L~~L~l~~c  669 (725)
                      .+.|+.|.+.+|
T Consensus       241 W~~lrEL~lnDC  252 (388)
T COG5238         241 WNLLRELRLNDC  252 (388)
T ss_pred             cchhhhccccch
Confidence            566777777776

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.71  E-value=0.0011  Score=74.50  Aligned_cols=134  Identities=17%  Similarity=0.166  Sum_probs=66.7

Q ss_pred             CccEEEeccCcCccc----ccCCCCCcceeeeeccCh----hhhhhccCCCcccEEEecCCCceeEcccccccCCCCccc
Q 048826          138 KLRELHVIRCSKLQG----TFPEHLPALEMLAIEKCE----ELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVV  209 (725)
Q Consensus       138 ~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  209 (725)
                      +|++|++++-..+..    .+...+|.|++|.+.+-.    ....-...+|+|..|+|++++.....+..          
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS----------  192 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGIS----------  192 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHh----------
Confidence            455555554322221    222345666666666522    22344567778888888877755542221          


Q ss_pred             ccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccC
Q 048826          210 CGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSC  289 (725)
Q Consensus       210 ~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~  289 (725)
                                      .+.+|+.|.+.++.--..   ..-.-+..+++|++||++.-.....-  ......+..-.. .|
T Consensus       193 ----------------~LknLq~L~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~-Lp  250 (699)
T KOG3665|consen  193 ----------------RLKNLQVLSMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMV-LP  250 (699)
T ss_pred             ----------------ccccHHHHhccCCCCCch---hhHHHHhcccCCCeeeccccccccch--HHHHHHHHhccc-Cc
Confidence                            244555554444443221   11112356889999998874433321  111112222222 25


Q ss_pred             CccEEEEecccCcc
Q 048826          290 RLEYLRLRYCKGLV  303 (725)
Q Consensus       290 ~L~~L~L~~~~~~~  303 (725)
                      .|+.||.++.....
T Consensus       251 eLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  251 ELRFLDCSGTDINE  264 (699)
T ss_pred             cccEEecCCcchhH
Confidence            77777777655443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.33  E-value=0.00057  Score=57.77  Aligned_cols=87  Identities=16%  Similarity=0.200  Sum_probs=67.5

Q ss_pred             ccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc
Q 048826          573 TNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS  652 (725)
Q Consensus       573 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~  652 (725)
                      ..+..++++.|+.+.  +.+..+.+.....|+..++++  +....||.....        .++.++.|.+++ +.+..+|
T Consensus        27 kE~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~--N~fk~fp~kft~--------kf~t~t~lNl~~-neisdvP   93 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSD--NGFKKFPKKFTI--------KFPTATTLNLAN-NEISDVP   93 (177)
T ss_pred             HHhhhcccccchhhH--HHHHHHHHhCCceEEEEeccc--chhhhCCHHHhh--------ccchhhhhhcch-hhhhhch
Confidence            566778888887652  222235566777888888988  788888887653        678899999998 7899999


Q ss_pred             ccccCCcCCCeEeccCCCCC
Q 048826          653 SSIVDLQNLTSLYLLDCPKL  672 (725)
Q Consensus       653 ~~~~~~~~L~~L~l~~c~~l  672 (725)
                      ..+..++.|+.|+++.++..
T Consensus        94 eE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   94 EELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             HHHhhhHHhhhcccccCccc
Confidence            98889999999999987643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.26  E-value=0.0062  Score=55.40  Aligned_cols=13  Identities=23%  Similarity=0.061  Sum_probs=6.0

Q ss_pred             cccccceecccch
Q 048826          572 PTNLHSLWIEDNM  584 (725)
Q Consensus       572 ~~~L~~L~l~~n~  584 (725)
                      +|+|++|.+-+|+
T Consensus       112 ~p~L~~Ltll~Np  124 (233)
T KOG1644|consen  112 CPKLEYLTLLGNP  124 (233)
T ss_pred             CCccceeeecCCc
Confidence            3444444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.09  E-value=0.00053  Score=57.95  Aligned_cols=103  Identities=17%  Similarity=0.238  Sum_probs=74.2

Q ss_pred             ccEEEEecccchh--hhhhhhcCCCCccEEEecCCCCccccccccc-CCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          456 LKSLSVYGCSKLE--SIAERLDNNTSLEYINISNCENLKILPSGLH-NLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       456 L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      +..++|++|...-  ..+-.+.....|...++++ +.+..+|..+. .++.++.+++.+ +.+.++|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence            6777888886542  2233445566777788888 56666666554 467889999988 57788888888899999999


Q ss_pred             eccccCccccccccCCCCCcceeecCCCC
Q 048826          533 ILDCKRLEALPKGLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  561 (725)
                      ++.|+.. ..|..+..+.++..|+..+|.
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence            9998844 455556557788888877763

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.36  E-value=0.00046  Score=65.48  Aligned_cols=86  Identities=17%  Similarity=0.234  Sum_probs=60.7

Q ss_pred             CCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCC
Q 048826           29 HKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFP  108 (725)
Q Consensus        29 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  108 (725)
                      ..+.+.|+.-|+++..+.  +.. -++.|++|.|+-| .++.+.++..|++|+.|+|..|. |+.+..-+.-    ..+|
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~-kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~-I~sldEL~YL----knlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICE-KMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNC-IESLDELEYL----KNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHH-hcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcc-cccHHHHHHH----hcCc
Confidence            356667776666665543  221 2788999999987 88899889999999999999876 7766554332    2278


Q ss_pred             Ccceeeecccccccc
Q 048826          109 CLETLRFEDMEEWED  123 (725)
Q Consensus       109 ~L~~L~l~~~~~l~~  123 (725)
                      +|++|++...|....
T Consensus        89 sLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGE  103 (388)
T ss_pred             hhhhHhhccCCcccc
Confidence            888888877665443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.22  E-value=0.029  Score=53.48  Aligned_cols=137  Identities=18%  Similarity=0.156  Sum_probs=61.7

Q ss_pred             hhcCCCCccEEEecCCCCcccccc----cccCCCcccEEEeccCCCccccCC--------------CCcCcCcCceeeec
Q 048826          473 RLDNNTSLEYINISNCENLKILPS----GLHNLRQLQEITIQRCGNLESFPE--------------GGLLCAKLTRLTIL  534 (725)
Q Consensus       473 ~~~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l~~~~~~~~~~~--------------~~~~l~~L~~L~l~  534 (725)
                      .+..||+|+..++++|-.-...|+    .+.+-+.|++|.+++|.. +-+..              ....-|.|+++...
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            344566666666666543333332    233445666666666432 11110              12233556666665


Q ss_pred             cccCcccccc-----ccCCCCCcceeecCCCCCCCC----ccc--CCCcccccceecccchhhHHHHhhccccccccCCC
Q 048826          535 DCKRLEALPK-----GLHNLTSLQQLTIGKGGELPS----LEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSL  603 (725)
Q Consensus       535 ~~~~~~~~~~-----~~~~l~~L~~L~l~~~~~l~~----~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L  603 (725)
                      .|+. ...+.     .+.+-..|+.+.+..|..-+.    ...  ...+.+|+.||+.+|-.........+..+..++.|
T Consensus       166 rNRl-engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         166 RNRL-ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             cchh-ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence            5542 11111     222234666666666632211    111  12235666666666644332222212233444445


Q ss_pred             cEEEeecC
Q 048826          604 RRLTIINC  611 (725)
Q Consensus       604 ~~L~l~~~  611 (725)
                      ++|.+.+|
T Consensus       245 rEL~lnDC  252 (388)
T COG5238         245 RELRLNDC  252 (388)
T ss_pred             hhccccch
Confidence            55555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.07  E-value=0.0072  Score=57.41  Aligned_cols=82  Identities=18%  Similarity=0.227  Sum_probs=42.0

Q ss_pred             CCCCccEEEecCCCCcccccccccCCCcccEEEeccC--CCccccCCCCcCcCcCceeeeccccCcc--ccccccCCCCC
Q 048826          476 NNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRC--GNLESFPEGGLLCAKLTRLTILDCKRLE--ALPKGLHNLTS  551 (725)
Q Consensus       476 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~  551 (725)
                      .+..|+.+.+.++. ++++ ..+..+++|+.|.++.|  .....++.....+|+|+++++++|....  .+ ..+..+++
T Consensus        41 ~~~~le~ls~~n~g-ltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVG-LTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELEN  117 (260)
T ss_pred             cccchhhhhhhccc-eeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcc
Confidence            44556666665532 2222 22445667777777766  3333444444455666666666665321  11 12344555


Q ss_pred             cceeecCCC
Q 048826          552 LQQLTIGKG  560 (725)
Q Consensus       552 L~~L~l~~~  560 (725)
                      |..|++.+|
T Consensus       118 L~~Ldl~n~  126 (260)
T KOG2739|consen  118 LKSLDLFNC  126 (260)
T ss_pred             hhhhhcccC
Confidence            555666555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.74  E-value=0.014  Score=55.44  Aligned_cols=37  Identities=11%  Similarity=0.043  Sum_probs=16.1

Q ss_pred             CCCCccEEEecCC--CCcccccccccCCCcccEEEeccC
Q 048826          476 NNTSLEYINISNC--ENLKILPSGLHNLRQLQEITIQRC  512 (725)
Q Consensus       476 ~l~~L~~L~l~~~--~~~~~l~~~~~~l~~L~~L~l~~~  512 (725)
                      .+++|++|.+++|  .....++.....+|+|+++++++|
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N  101 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN  101 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence            3445555555554  222233333333455555555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.83  E-value=0.0047  Score=58.85  Aligned_cols=18  Identities=22%  Similarity=0.130  Sum_probs=9.6

Q ss_pred             hhccCCCcccEEEecCCC
Q 048826          174 ASITCLPALCKLKIYGCK  191 (725)
Q Consensus       174 ~~~~~~~~L~~L~l~~~~  191 (725)
                      +.+..|+.|+.|.++-|.
T Consensus        35 sic~kMp~lEVLsLSvNk   52 (388)
T KOG2123|consen   35 SICEKMPLLEVLSLSVNK   52 (388)
T ss_pred             HHHHhcccceeEEeeccc
Confidence            344455555555555554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.89  E-value=0.013  Score=53.49  Aligned_cols=60  Identities=17%  Similarity=0.351  Sum_probs=37.2

Q ss_pred             CCCcceeeecccccccccccCCCCCCC-CCCCCccEEEeccCcCcccccC---CCCCcceeeeeccCh
Q 048826          107 FPCLETLRFEDMEEWEDWIPHGSSQGV-EGFPKLRELHVIRCSKLQGTFP---EHLPALEMLAIEKCE  170 (725)
Q Consensus       107 ~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~  170 (725)
                      ++.++.|++.+|..+.+|.    .+.+ ...++|+.|+|++|+.++..--   ..+++|+.|.+.+-+
T Consensus       124 l~~i~~l~l~~ck~~dD~~----L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWC----LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             cchhhhheeccccchhhHH----HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            6677777888888888875    3444 4567788888888877762111   124455555555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.34  E-value=0.016  Score=52.78  Aligned_cols=81  Identities=19%  Similarity=0.240  Sum_probs=50.7

Q ss_pred             cCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcc---cCCCcccccceecccchhhHHHHhhccccccccCCC
Q 048826          527 KLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE---EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSL  603 (725)
Q Consensus       527 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L  603 (725)
                      .++.+|-+++....+--..+..+++++.|.+.+|..+.+..   ..+..++|+.|+|++|+.+++....   .+..+++|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~---~L~~lknL  178 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA---CLLKLKNL  178 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH---HHHHhhhh
Confidence            45566666655444433445667777778888876665421   1224488888888888877654432   46667777


Q ss_pred             cEEEeec
Q 048826          604 RRLTIIN  610 (725)
Q Consensus       604 ~~L~l~~  610 (725)
                      +.|.+.+
T Consensus       179 r~L~l~~  185 (221)
T KOG3864|consen  179 RRLHLYD  185 (221)
T ss_pred             HHHHhcC
Confidence            7777765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.29  E-value=0.11  Score=29.03  Aligned_cols=19  Identities=37%  Similarity=0.356  Sum_probs=10.4

Q ss_pred             ccEEEEecccCccccccccC
Q 048826          291 LEYLRLRYCKGLVKLPQSSL  310 (725)
Q Consensus       291 L~~L~L~~~~~~~~~~~~~~  310 (725)
                      |++|+|++|.+. .+|++++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            566666666443 5555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.68  E-value=0.97  Score=39.07  Aligned_cols=12  Identities=33%  Similarity=0.470  Sum_probs=4.9

Q ss_pred             CCCCCcceeecC
Q 048826          547 HNLTSLQQLTIG  558 (725)
Q Consensus       547 ~~l~~L~~L~l~  558 (725)
                      ..+++|+.+++.
T Consensus        78 ~~~~~l~~i~~~   89 (129)
T PF13306_consen   78 SNCTNLKNIDIP   89 (129)
T ss_dssp             TT-TTECEEEET
T ss_pred             cccccccccccC
Confidence            334444444443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.88  E-value=0.22  Score=25.80  Aligned_cols=10  Identities=30%  Similarity=0.411  Sum_probs=4.2

Q ss_pred             CccEEEEecC
Q 048826           56 NLVILKFEDC   65 (725)
Q Consensus        56 ~L~~L~l~~c   65 (725)
                      +|+.|+|++|
T Consensus         2 ~L~~L~l~~n   11 (17)
T PF13504_consen    2 NLRTLDLSNN   11 (17)
T ss_dssp             T-SEEEETSS
T ss_pred             ccCEEECCCC
Confidence            3444444444

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=89.85  E-value=0.21  Score=27.87  Aligned_cols=18  Identities=39%  Similarity=0.355  Sum_probs=11.8

Q ss_pred             CCcEEEeccCccccccccc
Q 048826          636 SLTSLWISNFPNLERLSSS  654 (725)
Q Consensus       636 ~L~~L~l~~~~~l~~i~~~  654 (725)
                      +|++|++++| .++.||.+
T Consensus         1 ~L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             TESEEEETSS-EESEEGTT
T ss_pred             CccEEECCCC-cCEeCChh
Confidence            4677777775 56677753

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.03  E-value=2.2  Score=36.81  Aligned_cols=97  Identities=24%  Similarity=0.337  Sum_probs=47.3

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCC-CCcCcCcCceee
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLT  532 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~  532 (725)
                      +|+.+.+.. .........|..+++|+.+.+...  +..++. .+.++++|+.+.+.+  ....++. .+..+++|+.++
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccccccccc
Confidence            477777664 233333455677778888888662  444433 355676788888864  3334443 344577888888


Q ss_pred             eccccCccccc-cccCCCCCcceeecCC
Q 048826          533 ILDCKRLEALP-KGLHNLTSLQQLTIGK  559 (725)
Q Consensus       533 l~~~~~~~~~~-~~~~~l~~L~~L~l~~  559 (725)
                      +..+  ...++ ..+..+ .|+.+.+..
T Consensus        88 ~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   88 IPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             cCcc--ccEEchhhhcCC-CceEEEECC
Confidence            8654  33333 345555 777777654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.93  E-value=0.65  Score=27.09  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=15.2

Q ss_pred             CCccceeeecCcccceeccccc
Q 048826           77 LPSLKHLAVSGMSKVKRLGSEF   98 (725)
Q Consensus        77 l~~L~~L~l~~~~~l~~i~~~~   98 (725)
                      +++|++|++++|. ++.+|...
T Consensus         1 L~~L~~L~L~~N~-l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQ-LSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCc-CCcCCHHH
Confidence            4677888888875 77777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.93  E-value=0.65  Score=27.09  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=15.2

Q ss_pred             CCccceeeecCcccceeccccc
Q 048826           77 LPSLKHLAVSGMSKVKRLGSEF   98 (725)
Q Consensus        77 l~~L~~L~l~~~~~l~~i~~~~   98 (725)
                      +++|++|++++|. ++.+|...
T Consensus         1 L~~L~~L~L~~N~-l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQ-LSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCc-CCcCCHHH
Confidence            4677888888875 77777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	725
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		1e-05

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 420 LEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGC--SKLESIAERLDNN 477
           L  L I +CP LT      ELP  L S +       L +L       + + S+   + N 
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 478 TSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPE--GGLLCAKLTRLTILD 535
            +L+ + I N   L  L   +H+L +L+E+ ++ C  L ++P   GG   A L RL + D
Sbjct: 206 QNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKD 262
Query: 536 CKRLEALPKGLHNLTSLQQLTIGKG----GELPSLEEDGLPTN 574
           C  L  LP  +H LT L++L + +G      LPSL    LP N
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDL-RGCVNLSRLPSLIAQ-LPAN 303

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	725
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	7e-06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.7 bits (244), Expect = 2e-22
 Identities = 65/320 (20%), Positives = 107/320 (33%), Gaps = 45/320 (14%)

Query: 291 LEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALK 350
            E L  +    L                +  +  S          S   +I+ R   ALK
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGRALK 69

Query: 351 LLPEAWMSDTNSSLEILSIWVCH------------SLT--YLAG---VQLPRS---LKRL 390
              +     T      L +                 L    +     ++LP +      L
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGL 129

Query: 391 VILNCDN--IRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLE 448
             L      +R L     I S +        L  L I +CP LT      ELP  L S +
Sbjct: 130 ETLTLARNPLRALP--ASIASLNR-------LRELSIRACPELT------ELPEPLASTD 174

Query: 449 VGNLPPSLKSLSV--YGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQE 506
                  L +L       + + S+   + N  +L+ + I N   L  L   +H+L +L+E
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEE 233

Query: 507 ITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSL 566
           + ++ C  L ++P      A L RL + DC  L  LP  +H LT L++L +     L  L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 567 -EEDGLPTNLHSLWIEDNME 585
                       + +  +++
Sbjct: 294 PSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 59/348 (16%), Positives = 115/348 (33%), Gaps = 64/348 (18%)

Query: 222 PLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQ 281
           P    L + +     D       W+  N       +  ++   +   L++     E   Q
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWRQANS------NNPQIETRTGRALKATADLLEDATQ 80

Query: 282 QQLCELSCR----------------LEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSS 325
                L  R                L+++ +     L++LP +    + L  + + +   
Sbjct: 81  PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP- 138

Query: 326 LVSFP-EVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLP 384
           L + P  +A  ++L+++  R C  L  LPE           + S         L      
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPE----------PLASTDASGEHQGL------ 182

Query: 385 RSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATL 444
            +L+ L  L    IR+L     I +  +       L+ L I +   L+       L   +
Sbjct: 183 VNLQSL-RLEWTGIRSLP--ASIANLQN-------LKSLKIRNS-PLS------ALGPAI 225

Query: 445 ESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQL 504
             L        L+ L + GC+ L +          L+ + + +C NL  LP  +H L QL
Sbjct: 226 HHLP------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279

Query: 505 QEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSL 552
           +++ ++ C NL   P           + +    + +          + 
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.8 bits (187), Expect = 6e-15
 Identities = 42/259 (16%), Positives = 71/259 (27%), Gaps = 43/259 (16%)

Query: 467 LESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLL-- 524
           + S      +++  E +       L+     L   ++       R  +            
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 525 ----------------CAKLTRLTILD--CKRLEALPKGLHNLTSLQQLTIGKGGELPSL 566
                            A       L+     L   P     L+ LQ +TI     L  L
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTID-AAGLMEL 119

Query: 567 -EEDGLPTNLHSLWIEDNM------EIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFP 619
            +       L +L +  N        I              + LR L+I  C  ++   P
Sbjct: 120 PDTMQQFAGLETLTLARNPLRALPASIAS-----------LNRLRELSIRAC-PELTELP 167

Query: 620 PEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEK- 678
                           +L SL +     +  L +SI +LQNL SL + +   L       
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPASIANLQNLKSLKIRNS-PLSALGPAI 225

Query: 679 GLPSSLLQLHIYRCPLIEE 697
                L +L +  C  +  
Sbjct: 226 HHLPKLEELDLRGCTALRN 244

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 61/447 (13%), Positives = 109/447 (24%), Gaps = 135/447 (30%)

Query: 67  MCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIP 126
           M ++          ++L   G + ++                  +     D   W     
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQ---------WQRHYNADRNRWHSAWR 51

Query: 127 HGSSQGVEGFPKLRELHVIRCSKLQGTFPE----HLPALEMLAIEKC--EELLASITCLP 180
             +S          ++       L+ T         P    L +      +       L 
Sbjct: 52  QANSN-------NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLS 104

Query: 181 ALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKE 240
            L  + I            D +                       +   LE L +     
Sbjct: 105 HLQHMTIDAAG---LMELPDTMQ----------------------QFAGLETLTL----- 134

Query: 241 QTYIWKSHNELL---QDICSLKRLT---IDSCPKLQSLVAEEEKDQQQQLCELSCRLEYL 294
                 + N L      I SL RL    I +CP+L  L             +    L+ L
Sbjct: 135 ------ARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 295 RLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPE 354
           RL +   +  LP S  +L +L+ ++I     L +                   A+  L  
Sbjct: 189 RLEWTG-IRSLPASIANLQNLKSLKIRNS-PLSALGP----------------AIHHL-- 228

Query: 355 AWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRR 414
                    LE L +  C +L        P                              
Sbjct: 229 -------PKLEELDLRGCTALR-----NYPPIFGGR------------------------ 252

Query: 415 YTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERL 474
              + L+ L ++ C +L        LP  +  L        L+ L + GC  L  +   +
Sbjct: 253 ---APLKRLILKDCSNLL------TLPLDIHRLT------QLEKLDLRGCVNLSRLPSLI 297

Query: 475 DNNTSLEYINISNCENLKILPSGLHNL 501
               +   I +      ++        
Sbjct: 298 AQLPANCIILVPPHLQAQLDQHRPVAR 324

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.0 bits (186), Expect = 3e-14
 Identities = 92/554 (16%), Positives = 168/554 (30%), Gaps = 158/554 (28%)

Query: 13  SREAETE--KGVLDMLKPHKNLKQFCISGYGGT-KFPTWLGDSSFSNLVILKFEDCGMCT 69
           SR       +  L  L+P KN+    I G  G+ K  TW+      +  +    D  +  
Sbjct: 132 SRLQPYLKLRQALLELRPAKNV---LIDGVLGSGK--TWVALDVCLSYKVQCKMDFKI-- 184

Query: 70  TWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTP-FPCLETLRFEDMEEWEDWIPHG 128
            W ++    S + +    +  +++L  +   N +S         LR   ++         
Sbjct: 185 FWLNLKNCNSPETV----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE------- 233

Query: 129 SSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKI- 187
                     LR L                  L+    E C  LL  +  L  +   K  
Sbjct: 234 ----------LRRL------------------LKSKPYENC--LL--V--LLNVQNAKAW 259

Query: 188 ----YGCKKVV---WRSSTDHLGSQN-SVVCGDTSNQVFLTGPLKPRLPKLEELEINDMK 239
                 CK ++   ++  TD L +   + +  D  +       +K  L K  +    D+ 
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 240 EQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYC 299
            +     + N                 P+  S++AE  +D            +  +   C
Sbjct: 320 REV---LTTN-----------------PRRLSIIAESIRDG-------LATWDNWKHVNC 352

Query: 300 KGLVKLPQSSLSLSSLREIEIYKC-SSLVSFPE-VALPSKLKKIQFRECDALKLLPEAWM 357
             L  + +S  SL+ L   E  K    L  FP    +P+ L          L L+   W 
Sbjct: 353 DKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSAHIPTIL----------LSLI---WF 397

Query: 358 SDT------------NSSLEILSIWVCHSLTYLAGVQL-----PRSLKRL--VILNCDNI 398
                            SL  +      S   +  + L       +   L   I++  NI
Sbjct: 398 DVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 399 RTLTMEEGIQSSSSRRYTSSLLE-HL----HIESCPSLTRI-----FSKNELPATLESLE 448
                 + +      +Y  S +  HL    H E       +     F + ++     +  
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515

Query: 449 -VGNLPPSLKSLSVYG--CSKLESIAERLDNNTSLEYI-----NISNCENLKILPSGLHN 500
             G++  +L+ L  Y       +   ERL  N  L+++     N+   +   +L   L  
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLV-NAILDFLPKIEENLICSKYTDLLRIALMA 574

Query: 501 ---------LRQLQ 505
                     +Q+Q
Sbjct: 575 EDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 54/342 (15%), Positives = 89/342 (26%), Gaps = 107/342 (31%)

Query: 444 LESLEVGNLPPSLKSLSVYGCSKLESIAERLDN-NTSLEYINISNCENLKILPSGLHNLR 502
           +  ++     PS+ +  +Y         +RL N N      N+S  +    L   L  LR
Sbjct: 95  MSPIKTEQRQPSMMT-RMY-----IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 503 QLQEITIQRCGNLESFPEGGLLCAK--LTRLTILDCKRLEALPKGLH------------N 548
             + + I           G L   K  +     L  K    +   +              
Sbjct: 149 PAKNVLID----------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 549 LTSLQQL--TIGKGGELPSLEEDGLPTNLH-----------------SLWIEDNM---EI 586
           L  LQ+L   I       S     +   +H                  L +  N+   + 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 587 WK-----------------------------SMIERGRGFHRFSSLRRL-TIINCDDDMV 616
           W                              S+               L   ++C     
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-- 316

Query: 617 SFPPEPEDVRLGTTLPLPASLTSLWISNFP---------NLERLSSSI-VDLQNLTSLYL 666
             P E       TT P   S+ +  I +           N ++L++ I   L  L     
Sbjct: 317 DLPREVL-----TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 667 LDC-PKLRYFPEK-GLPSSLLQL----HIYRCP-LIEEKCRK 701
                +L  FP    +P+ LL L     I     ++  K  K
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 82/415 (19%), Positives = 140/415 (33%), Gaps = 98/415 (23%)

Query: 296 LRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP-SKLKKIQFRECDALKLLPE 354
           LR+   L ++P  + ++ S  E          + P       ++   + R+C        
Sbjct: 17  LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-------- 68

Query: 355 AWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRR 414
                 +     L +     L+      LP     L  L         + E  QS     
Sbjct: 69  -----LDRQAHELELNNL-GLS-----SLPELPPHLESLVASCNSLTELPELPQS----- 112

Query: 415 YTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERL 474
                L+ L +++        +   L          +LPP L+ L V    +LE + E L
Sbjct: 113 -----LKSLLVDN-------NNLKALS---------DLPPLLEYLGVSNN-QLEKLPE-L 149

Query: 475 DNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL 534
            N++ L+ I++ N  +LK LP    +L  +          LE  PE       L  LT +
Sbjct: 150 QNSSFLKIIDVDNN-SLKKLPDLPPSLEFI---AAGNN-QLEELPE----LQNLPFLTAI 200

Query: 535 DCK--RLEALPKGLHNLTSLQ----QLTIGKGGELPSLEEDGLPTNLHSLWIEDN-MEIW 587
                 L+ LP    +L S+      L      ELP L        L +++ ++N ++  
Sbjct: 201 YADNNSLKKLPDLPLSLESIVAGNNILE-----ELPEL---QNLPFLTTIYADNNLLKTL 252

Query: 588 KSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVR-------LGTTLP-LPASLTS 639
             +           SL  L + +    +   P  P+ +        + + L  LP +L  
Sbjct: 253 PDLP---------PSLEALNVRDN--YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 301

Query: 640 LWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPL 694
           L  S+  N   + S      +L  L + +  KL   P   LP  L +L      L
Sbjct: 302 LNASS--N--EIRSLCDLPPSLEELNVSNN-KLIELPA--LPPRLERLIASFNHL 349

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.3 bits (152), Expect = 3e-10
 Identities = 95/425 (22%), Positives = 147/425 (34%), Gaps = 83/425 (19%)

Query: 305 LPQSSLSLSSLREIEIYKCSSLVSFP-EVALPSKLKKIQFRECDALKLLPEAWMSDTNSS 363
           +   ++S + L+E  +   S+L   P E        +      +  +  P         +
Sbjct: 3   INPRNVSNTFLQEP-LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 364 LEILSIWVCHSLTYL-----AGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSS 418
           +  L   +      L         LP     L  L         + E  QS         
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQS--------- 112

Query: 419 LLEHLHIESCPSLTRIFSKNELPATLESL-----------EVGNLPPSLKSLSVYGCSKL 467
            L+ L +++  +L  +   ++LP  LE L           E+ N    LK + V     L
Sbjct: 113 -LKSLLVDNN-NLKAL---SDLPPLLEYLGVSNNQLEKLPELQNSS-FLKIIDVDNN-SL 165

Query: 468 ESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAK 527
           + + +      SLE+I   N   L+ LP  L NL  L  I      +L+  P+   L   
Sbjct: 166 KKLPDLP---PSLEFIAAGNN-QLEELPE-LQNLPFLTAIYADNN-SLKKLPD---LPLS 216

Query: 528 LTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIW 587
           L  +   +   LE LP  L NL  L  +       L +L +  LP +L +L + DN    
Sbjct: 217 LESIVAGNNI-LEELP-ELQNLPFLTTIYAD-NNLLKTLPD--LPPSLEALNVRDN---- 267

Query: 588 KSMIERGRGFHR-FSSLRRLTII-NCDDDMVSFPPEPEDVRLG----TTLP-LPASLTSL 640
                          SL  L +  N    +   PP    +        +L  LP SL  L
Sbjct: 268 -----YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 322

Query: 641 WISN---------FPNLERLSSS-------IVDLQNLTSLYLLDCPKLRYFPEKGLPSSL 684
            +SN          P LERL +S           QNL  L++     LR FP+  +P S+
Sbjct: 323 NVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYN-PLREFPD--IPESV 379

Query: 685 LQLHI 689
             L +
Sbjct: 380 EDLRM 384

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 84/408 (20%), Positives = 142/408 (34%), Gaps = 90/408 (22%)

Query: 219 LTGPLKPRLPKLEELEINDMKEQ-----TYIWKSHNELL---QDICSLKRLTID------ 264
                 P   +  E+ ++ +++        +  ++  L    +    L+ L         
Sbjct: 46  WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTE 105

Query: 265 ---SCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIY 321
                  L+SL    + +  + L +L   LEYL +   + L KLP    + S L+ I++ 
Sbjct: 106 LPELPQSLKSL--LVDNNNLKALSDLPPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVD 161

Query: 322 KCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGV 381
             S L   P+  LP  L+ I       L+ LPE         L  +       L      
Sbjct: 162 NNS-LKKLPD--LPPSLEFIAAGNNQ-LEELPELQNL---PFLTAIYADNNS-LK----- 208

Query: 382 QLPRSLKRLVILNCDN--IRTLTMEEGIQSSSSRRYTSSLLEHLHI---------ESCPS 430
           +LP     L  +   N  +  L   + +            L  ++          +  PS
Sbjct: 209 KLPDLPLSLESIVAGNNILEELPELQNLPF----------LTTIYADNNLLKTLPDLPPS 258

Query: 431 LTRIFSKN-------ELPATLESLEVGN--------LPPSLKSLSVYGCSKLESIAERLD 475
           L  +  ++       ELP +L  L+V          LPP+L  L+     ++ S+ +   
Sbjct: 259 LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN-EIRSLCDLP- 316

Query: 476 NNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD 535
              SLE +N+SN   L  LP+    L +L         +L   PE   L   L +L +  
Sbjct: 317 --PSLEELNVSNN-KLIELPALPPRLERL---IASFN-HLAEVPE---LPQNLKQLHVEY 366

Query: 536 CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDN 583
              L   P    ++  L+        E+P L     P NL  L +E N
Sbjct: 367 N-PLREFPDIPESVEDLRMN--SHLAEVPEL-----PQNLKQLHVETN 406

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.4 bits (167), Expect = 4e-12
 Identities = 78/382 (20%), Positives = 118/382 (30%), Gaps = 107/382 (28%)

Query: 331 EVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRL 390
              L +    +   E   L  LP+   +     +  L I    +LT      LP     L
Sbjct: 35  RACLNNGNAVLNVGESG-LTTLPDCLPA----HITTLVIPDN-NLT-----SLPALPPEL 83

Query: 391 VILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHL--HIESCPSLTRIF-SKNELPATLESL 447
             L     +                    L  L         L+        LPA     
Sbjct: 84  RTLEVSGNQ--------------------LTSLPVLPPGLLELSIFSNPLTHLPA----- 118

Query: 448 EVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEI 507
               LP  L  L ++G  +L S+         L+ +++S+   L  LP+    L +L   
Sbjct: 119 ----LPSGLCKLWIFGN-QLTSLPVLPPG---LQELSVSDN-QLASLPALPSELCKLWA- 168

Query: 508 TIQRCGNLESFPEGGLLCAKLTRLTILDCK--RLEALPKGLHNLTSLQ----QLTIGKGG 561
                  L S P         + L  L     +L +LP     L  L     +LT     
Sbjct: 169 ---YNNQLTSLPML------PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT----- 214

Query: 562 ELPSLEEDGLPTNLHSLWIEDNM--EIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFP 619
            LP+L     P+ L  L +  N    +              S L+ L +           
Sbjct: 215 SLPAL-----PSGLKELIVSGNRLTSLPVLP----------SELKELMVSGN-------- 251

Query: 620 PEPEDVRLGTTLP-LPASLTSLWISNFPN-LERLSSSIVDLQNLTSLYLLDCPKLRYFPE 677
                 RL T+LP LP+ L SL +    N L RL  S++ L + T++ L   P L     
Sbjct: 252 ------RL-TSLPMLPSGLLSLSVYR--NQLTRLPESLIHLSSETTVNLEGNP-LSERTL 301

Query: 678 KGLPSSLLQLHIYRCPLIEEKC 699
           +     +     Y  P+I    
Sbjct: 302 Q-ALREITSAPGYSGPIIRFDM 322

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 58/309 (18%), Positives = 102/309 (33%), Gaps = 63/309 (20%)

Query: 274 AEEEKDQQQQLCEL-SCR---LEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSF 329
           AEE + +   + ++ +C       L +    GL  LP    +   +  + I   + L S 
Sbjct: 21  AEESRGRAAVVQKMRACLNNGNAVLNVG-ESGLTTLPDCLPA--HITTLVIPDNN-LTSL 76

Query: 330 PEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLT--YLAGVQLPRSL 387
           P   LP +L+ ++      L  LP                     L+        LP   
Sbjct: 77  PA--LPPELRTLEVSGNQ-LTSLPV-------------LPPGLLELSIFSNPLTHLPALP 120

Query: 388 KRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCP----SLTRIFSKN----E 439
             L  L     +  ++                +    + S P     L ++++ N     
Sbjct: 121 SGLCKLWIFGNQLTSLPVLPPGLQELS-----VSDNQLASLPALPSELCKLWAYNNQLTS 175

Query: 440 LPATLESLEV----GN-------LPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNC 488
           LP     L+      N       LP  L  L  Y   +L S+       + L+ + +S  
Sbjct: 176 LPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN-RLTSLPALP---SGLKELIVSGN 231

Query: 489 ENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHN 548
             L  LP     L++L    +     L S P    L + L  L++    +L  LP+ L +
Sbjct: 232 R-LTSLPVLPSELKEL---MVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIH 282

Query: 549 LTSLQQLTI 557
           L+S   + +
Sbjct: 283 LSSETTVNL 291

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 51/294 (17%), Positives = 88/294 (29%), Gaps = 68/294 (23%)

Query: 425 IESCPSLTRI-FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYI 483
           IE    LT++  + N +     +L++     +L  L+     KL ++   +   T L Y+
Sbjct: 60  IEKLTGLTKLICTSNNI----TTLDLSQNT-NLTYLACDSN-KLTNLD--VTPLTKLTYL 111

Query: 484 NISNCENLKILPSGLHNLR-------QLQEITIQRCGNLESFPEGG------LLCAKLTR 530
           N    +  K+  S    L         L EI +     L             L     T+
Sbjct: 112 NCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQ 171

Query: 531 LTILDCK--RLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWK 588
           LT LDC   ++  L   +     L +L       +  L+ +     L  L    N ++  
Sbjct: 172 LTTLDCSFNKITELD--VSQNKLLNRLNCD-TNNITKLDLNQN-IQLTFLDCSSN-KL-- 224

Query: 589 SMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNL 648
           + I+        + L +LT  +C  +                      LT L +S    L
Sbjct: 225 TEID-------VTPLTQLTYFDCSVN---------------------PLTELDVSTLSKL 256

Query: 649 ERLSSS--------IVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPL 694
             L           +     L       C K++          L  L      +
Sbjct: 257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT-QLYLLDCQAAGI 309

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 64/455 (14%), Positives = 133/455 (29%), Gaps = 112/455 (24%)

Query: 254 DICSLKRLTIDSCPKLQSLVAEEEK-------DQQQQLCELSC---RLEYLRLRYCKGLV 303
           ++ +   ++ +    L SL             ++   L +L C    +  L L     L 
Sbjct: 29  EMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLT 88

Query: 304 KLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSS 363
            L   +   + L  +++   + L         +KL K+   +   L  L     +   ++
Sbjct: 89  YL---ACDSNKLTNLDVTPLTKLTYL--NCDTNKLTKLDVSQNPLLTYL-----NCARNT 138

Query: 364 LEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHL 423
           L  + +     LT L    L + + +L +     + TL                + +  L
Sbjct: 139 LTEIDVSHNTQLTEL-DCHLNKKITKLDVTPQTQLTTLDCS------------FNKITEL 185

Query: 424 HIESCPSLTRIF-SKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEY 482
            +     L R+    N +      L++      L  L      KL  I   +   T L Y
Sbjct: 186 DVSQNKLLNRLNCDTNNI----TKLDLNQNI-QLTFLDCSSN-KLTEI--DVTPLTQLTY 237

Query: 483 INISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEAL 542
            + S     ++  S L  L  L       C               L  + +    +L   
Sbjct: 238 FDCSVNPLTELDVSTLSKLTTLH------CIQT-----------DLLEIDLTHNTQLIYF 280

Query: 543 PKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSS 602
                    +++L +               T L+ L  +    I  + ++        S 
Sbjct: 281 --QAEGCRKIKELDVTH------------NTQLYLLDCQAA-GI--TELD-------LSQ 316

Query: 603 LRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS------SSIV 656
             +L  +  ++                       LT L +S+   L+ LS          
Sbjct: 317 NPKLVYLYLNN---------------------TELTELDVSHNTKLKSLSCVNAHIQDFS 355

Query: 657 DLQNLTSLYLLDC--PKLRYFPEKGLPSSLLQLHI 689
            +  + +L        +    P++ L ++ L + +
Sbjct: 356 SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 49/288 (17%), Positives = 86/288 (29%), Gaps = 62/288 (21%)

Query: 420 LEHLHIESCPSLTRI-FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNT 478
           L  + +     LT +    N+    +  L+V      L +L      K+  +   +  N 
Sbjct: 139 LTEIDVSHNTQLTELDCHLNKK---ITKLDVTPQT-QLTTLDCSFN-KITELD--VSQNK 191

Query: 479 SLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCK- 537
            L  +N     N+  L   L+   QL  +       L            LT+LT  DC  
Sbjct: 192 LLNRLNCDTN-NITKLD--LNQNIQLTFLDCSSN-KLTEIDVT-----PLTQLTYFDCSV 242

Query: 538 -RLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRG 596
             L  L   +  L+ L  L      +L  ++     T L     E   +I    ++    
Sbjct: 243 NPLTELD--VSTLSKLTTLHCI-QTDLLEIDLTHN-TQLIYFQAEGCRKI--KELD---- 292

Query: 597 FHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSS-- 654
               +   +L +++C                         +T L +S  P L  L  +  
Sbjct: 293 ---VTHNTQLYLLDCQAA---------------------GITELDLSQNPKLVYLYLNNT 328

Query: 655 ------IVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIE 696
                 +     L SL  ++   ++ F   G   +L          I 
Sbjct: 329 ELTELDVSHNTKLKSLSCVNA-HIQDFSSVGKIPALNNNFEAEGQTIT 375

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 51/254 (20%), Positives = 82/254 (32%), Gaps = 35/254 (13%)

Query: 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCG 513
            +  S          +     +   +L  ++  N  ++  +  G+  L  L ++      
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSN- 74

Query: 514 NLESFPEGGLLCAKLTRLTILDCK--RLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGL 571
           N+ +           T LT L C   +L  L   +  LT L  L      +L  L+    
Sbjct: 75  NITTLDLSQ-----NTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD-TNKLTKLDVSQN 126

Query: 572 PTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTL 631
           P  L  L    N  +  + I+        S   +LT ++C  +      +       TTL
Sbjct: 127 P-LLTYLNCARN-TL--TEID-------VSHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175

Query: 632 PLPA-SLTSLWISNFPNLERLS------SSIVDLQNLTSLYLLDCP--KLRYFPEKGLPS 682
                 +T L +S    L RL+      + + DL     L  LDC   KL       L  
Sbjct: 176 DCSFNKITELDVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEIDVTPLT- 233

Query: 683 SLLQLHIYRCPLIE 696
            L        PL E
Sbjct: 234 QLTYFDCSVNPLTE 247

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 59/529 (11%), Positives = 142/529 (26%), Gaps = 74/529 (13%)

Query: 60  LKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDS---------STPFPCL 110
           +    C   T      + P+L+ L + G  +                      S     L
Sbjct: 55  VTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL 114

Query: 111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQ----GTFPEHLPALEMLAI 166
           +++ F  M   +  +             L  L + +CS        +   H   ++ L +
Sbjct: 115 KSVHFRRMIVSDLDL---DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171

Query: 167 EKC---EELLASITCLPALCK------LKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQV 217
           E+    E+    +  L             +    K+  +       +  S+V     +  
Sbjct: 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231

Query: 218 FLTGP-LKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEE 276
            L           LEE     + E   + + +  L       ++L       +       
Sbjct: 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL----VFPRKLCRLGLSYMGPNEMPI 287

Query: 277 EKDQQQQLCELSCRLEYLRLRYCKGLV-KLPQSSLSLSSLREIEIYKCSSLVSFPEVALP 335
                  L   + ++  L L Y                +L  +E            +A  
Sbjct: 288 -------LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340

Query: 336 -SKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILN 394
             +LK+++       + + +     +   L  L+   C  L Y+              + 
Sbjct: 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG-CQELEYM-------------AVY 386

Query: 395 CDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPP 454
             +I      E ++S  +          + ++    +T +   N + + L          
Sbjct: 387 VSDIT----NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC------K 436

Query: 455 SLKSLSVYGCSKL---ESIAERLDNNTSLEYINISNCENL-KILPSGLHNLRQLQEITIQ 510
            L+  + Y          ++     + ++ ++ +       + L         LQ++ ++
Sbjct: 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496

Query: 511 RCGNL-ESFPEGGLLCAKLTRLTILDCK------RLEALPKGLHNLTSL 552
            C     +          L  L +   +       L  + +   N+  +
Sbjct: 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 72/509 (14%), Positives = 150/509 (29%), Gaps = 115/509 (22%)

Query: 226 RLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLC 285
           R   LE L+++     T        ++     +K L ++         +E++     +L 
Sbjct: 136 RADDLETLKLDKCSGFTT--DGLLSIVTHCRKIKTLLMEESS-----FSEKDGKWLHELA 188

Query: 286 ELSCRLEYLRLRYC-------KGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKL 338
           + +  LE L            K L  + ++     SL  +++     L         + L
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNC---RSLVSVKVGDFEILELVGFFKAAANL 245

Query: 339 KKIQFRECDALKLLPEAWMSDTN-SSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDN 397
           ++      +    +PE +M+      L  L +                 +++L +L    
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305

Query: 398 IRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLE-VGNLPPSL 456
                             T        I+ CP+L  + ++N +      LE +      L
Sbjct: 306 E-----------------TEDHCTL--IQKCPNLEVLETRNVI--GDRGLEVLAQYCKQL 344

Query: 457 KSLSVYGCSKLESIAERLD------------NNTSLEYINISNC----ENLKILPSGLHN 500
           K L +   +  + + +                   LEY+ +       E+L+ + + L N
Sbjct: 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN 404

Query: 501 LRQLQEITIQRCGNLESFPEGGLL------CAKLTRLTILDCKR------LEALPKGLHN 548
           L   + + + R   +   P    +      C KL R      +       L  + +   N
Sbjct: 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464

Query: 549 LTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI 608
           +  +                      L  +   D     + ++E  RG      L++L +
Sbjct: 465 VRWM---------------------LLGYVGESD-----EGLMEFSRGCPN---LQKLEM 495

Query: 609 INC---DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFP---NLERLSSSIVDLQNLT 662
             C   +  + +           T LP   SL  LW+  +      + L        N+ 
Sbjct: 496 RGCCFSERAIAA---------AVTKLP---SLRYLWVQGYRASMTGQDLMQMARPYWNIE 543

Query: 663 SLYLLDCPKLRYFPEKGLPSSLLQLHIYR 691
            +     P++    E         +  Y 
Sbjct: 544 LIPSRRVPEVNQQGEIREMEHPAHILAYY 572

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 55/427 (12%), Positives = 124/427 (29%), Gaps = 77/427 (18%)

Query: 251 LLQDICSLKRLTIDSCPKLQ--SLVAEEEKDQQ----QQLCELSCRLEYLRLRYCK---- 300
           L +   +L+ L +   P+    +L+ E           ++     +L+ +  R       
Sbjct: 68  LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL 127

Query: 301 GLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDT 360
            L +L ++      L  +++ KCS   +   +++ +  +KI+      L +   ++    
Sbjct: 128 DLDRLAKARAD--DLETLKLDKCSGFTTDGLLSIVTHCRKIK-----TLLMEESSFSEKD 180

Query: 361 NSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLL 420
              L  L+     SL  L             +     I    +E   ++  S       L
Sbjct: 181 GKWLHELA-QHNTSLEVL----------NFYMTEFAKISPKDLETIARNCRS-------L 222

Query: 421 EHLHIESCPSLTRIFSKNELPATLESLEVGNL------------PPSLKSLSVYGCSKL- 467
             + +     L  +         LE    G+L                + L   G S + 
Sbjct: 223 VSVKVGDFEILELVGFFKAAAN-LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281

Query: 468 -ESIAERLDNNTSLEYINISNCENL-KILPSGLHNLRQLQEITIQRCGNLESFPEGGLLC 525
              +         +  +++       +   + +     L+ +  +              C
Sbjct: 282 PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341

Query: 526 AKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNME 585
            +L RL I      + +      ++    + + +G     LE       ++   I +   
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG--CQELEY----MAVYVSDITN--- 392

Query: 586 IWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNF 645
             +S+   G         R + +   +                T LPL   + SL +   
Sbjct: 393 --ESLESIGTYLKNLCDFRLVLLDREERI--------------TDLPLDNGVRSL-LIGC 435

Query: 646 PNLERLS 652
             L R +
Sbjct: 436 KKLRRFA 442

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 58/416 (13%), Positives = 115/416 (27%), Gaps = 82/416 (19%)

Query: 226 RLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLC 285
           RL KL+ +             +++    D  ++     +S    Q    E          
Sbjct: 446 RLTKLQIIYF-----------ANSPFTYDNIAVDWEDANSDYAKQYENEELS------WS 488

Query: 286 ELSCRLEYLRLRYCKGLVKLPQS--------SLSLSS--LREIEIYKCSSLVSFPEVALP 335
            L   L  + L  C  + +LP          SL+++          K        +    
Sbjct: 489 NLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 336 SKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNC 395
            K++       + L+  P +        L +L       + +L        L  L +   
Sbjct: 548 PKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYN 605

Query: 396 DNIRTLTMEEGIQSSSSRRYT------SSLLEHLHIESCPSLTRI-FSKNEL----PATL 444
             I  +  +    +               +    + +S   +  + FS N++        
Sbjct: 606 -QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 445 ESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNC-------ENLKILPSG 497
            S++      +  ++++      +   E     + +  I +SN         +LK     
Sbjct: 665 CSMDDYKGI-NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 498 LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCK--RLEALPKGLHNLTSLQQL 555
             N   L  I ++    L S  +       L  L+ +D       + P    N + L+  
Sbjct: 724 YKNTYLLTTIDLRFN-KLTSLSDDFRAT-TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781

Query: 556 TIGKG----------------GELPSLEE------------DGLPTNLHSLWIEDN 583
            I                      PSL +            + L   L+ L I DN
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 48/414 (11%), Positives = 118/414 (28%), Gaps = 70/414 (16%)

Query: 290 RLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDAL 349
           R+  L L       ++P +   L+ L+ +     S  VS            +       +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 350 KLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQS 409
           ++  +    D +  L +  +        +      + +K+   ++  + +   +   I  
Sbjct: 384 RMHYKKMFLDYDQRLNLSDL----LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439

Query: 410 SSSRRYTSSLLEHLHIESCPSLTRIF-SKNELPATLESLEVGNLPPSLKSLSVYGCSKLE 468
            S             I+    L  I+ + +       ++         +  +     + E
Sbjct: 440 ISK-----------AIQRLTKLQIIYFANSPFTYDNIAV-------DWEDANSDYAKQYE 481

Query: 469 SIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAK- 527
           +      N   L  + + NC N+  LP  L++L +LQ + I       S  +      + 
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN-RGISAAQLKADWTRL 540

Query: 528 ------LTRLTILDCK--RLEALPK--GLHNLTSLQQL--------TIGKGGELPSLEE- 568
                   ++ I       LE  P    L  +  L  L         +   G    L + 
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDL 600

Query: 569 -------DGLP-------TNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDD 614
                  + +P         +  L    N ++    I           +  +        
Sbjct: 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KL--KYIPNIFNAKSVYVMGSVDFSYN--- 654

Query: 615 MVSFPPEPEDVRLGTTLPLPASLTSLWISNFPN-LERL-SSSIVDLQNLTSLYL 666
                 E  ++          + +++ +S   N +++  +        ++++ L
Sbjct: 655 --KIGSEGRNISCSMDDYKGINASTVTLSY--NEIQKFPTELFATGSPISTIIL 704

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 5e-11
 Identities = 50/360 (13%), Positives = 107/360 (29%), Gaps = 79/360 (21%)

Query: 362 SSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLE 421
           + LE+L++   H       +  P+ +   +         +  ++       R   S L+ 
Sbjct: 105 TELEVLALG-SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI- 162

Query: 422 HLHIESCPSLTRIFSKNELPATLESL------------EVGNLPPSLKSLSVYG------ 463
              I S P    I   + +      +             V  L   L+   +        
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT-KLRQFYMGNSPFVAE 221

Query: 464 -------------CSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQ 510
                          + ++   + DN   L  + + NC NL  LP+ L  L ++Q I + 
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

Query: 511 RCGNLESFPEGGLLCAKLTRLTILDCKRLEAL------------PKGLHNLTSLQQLTIG 558
                 S  +       L    +   ++++ +               L  +  L  L   
Sbjct: 282 CN-RGISGEQLKDDWQALADAPV--GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 559 K---GGELPSLEEDGLPTNLHSLWIEDNM--EIWKSMIERGRGFHRFSSLRRLTIINCDD 613
                G+LP+         L SL +  N   EI  +               ++  ++   
Sbjct: 339 YNQLEGKLPAFG--SE-IKLASLNLAYNQITEIPANF---------CGFTEQVENLSFAH 386

Query: 614 DMVSFPPEPEDVRLGTTLPLPASLTSLWISN-------FPNLERLSSSIVDLQNLTSLYL 666
           + + + P   D +  +       ++++  S          N + L  +     N++S+ L
Sbjct: 387 NKLKYIPNIFDAKSVS------VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 9e-11
 Identities = 84/590 (14%), Positives = 174/590 (29%), Gaps = 103/590 (17%)

Query: 138 KLRELHVIRCSKLQGTFPE---HLPALEMLAI----EKCEELLASITCLPALCKLKIYGC 190
           ++  L  +      G  P+    L  LE+LA+    EK  E L     + A    +    
Sbjct: 82  RVTGLS-LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 191 KKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNE 250
            ++        +         D       + P +  + K   + + D    T I +  N 
Sbjct: 141 MRM--HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD----TQIGQLSNN 194

Query: 251 LLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSL 310
           +   +       +    KL+           + +CE     E     Y +          
Sbjct: 195 ITF-VSK----AVMRLTKLRQFYMGNSPFVAENICEA---WENENSEYAQQYKTEDLKWD 246

Query: 311 SLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIW 370
           +L  L ++E+Y C +L   P             +    ++L+    ++  N  +    + 
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTF----------LKALPEMQLI---NVAC-NRGISGEQL- 291

Query: 371 VCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPS 430
                  LA   +   ++ +  +  +N++T  +E  +Q           L  L       
Sbjct: 292 -KDDWQALADAPVGEKIQII-YIGYNNLKTFPVETSLQKMKK-------LGMLEC----- 337

Query: 431 LTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNN-TSLEYINISNCE 489
                  N+L   L +   G+    L SL++    ++  I          +E ++ ++  
Sbjct: 338 -----LYNQLEGKLPAF--GSE-IKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN- 387

Query: 490 NLKILPS--GLHNLRQLQEITIQR-------CGNLESFPEGGLLCAKLTRLTILDCKRLE 540
            LK +P+     ++  +  I             N +           ++ +  L   ++ 
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI-NLSNNQIS 446

Query: 541 ALPKG-LHNLTSLQQL--------TIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMI 591
             PK      + L  +         I K       E       L S+ +  N  +  + +
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-L--TKL 503

Query: 592 ERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLER- 650
                      L  + +         FP +P +           +L    I N  + +  
Sbjct: 504 SDDFRATTLPYLVGIDLSYN--SFSKFPTQPLNSS---------TLKGFGIRNQRDAQGN 552

Query: 651 -----LSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLI 695
                    I    +LT L +     +R   E  +  ++  L I   P I
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSN-DIRKVNE-KITPNISVLDIKDNPNI 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 21/232 (9%), Positives = 62/232 (26%), Gaps = 32/232 (13%)

Query: 474 LDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQ----RCGNLESFPEGGLLCAKLT 529
           L++N  +  +++        +P  +  L +L+ + +     +       P+G        
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 530 RLTILDCKRLEALPKGLHNLTSLQQLTI---GKGGELPSLEEDGLPTNLHSLWIEDNM-- 584
           +   +     +              +         +    +   +      +    N   
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 585 EIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISN 644
            + K+         R + LR+  + N                      +  +  +     
Sbjct: 197 FVSKA-------VMRLTKLRQFYMGNSPF---------------VAENICEAWENENSEY 234

Query: 645 FPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEK-GLPSSLLQLHIYRCPLI 695
               +       +L++LT + + +CP L   P        +  +++     I
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 60/515 (11%), Positives = 141/515 (27%), Gaps = 129/515 (25%)

Query: 72  PSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQ 131
            +V +L  L+   +     V     E + N++S      +T                   
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----------------DL 243

Query: 132 GVEGFPKLRELHVIRCSKLQGTFPE---HLPALEML--------AIEKCEELLASITCLP 180
             +    L ++ V  C  L    P     LP ++++        + E+ ++   ++   P
Sbjct: 244 KWDNLKDLTDVEVYNCPNL-TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP 302

Query: 181 ALCKLKIYGCKKVVWRSSTDHLG-SQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMK 239
              K++I              +    N+            T P++  L K+++L + +  
Sbjct: 303 VGEKIQI--------------IYIGYNN----------LKTFPVETSLQKMKKLGMLEC- 337

Query: 240 EQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYC 299
                   +N+L   + +                                +L  L L Y 
Sbjct: 338 -------LYNQLEGKLPAFGSEI---------------------------KLASLNLAYN 363

Query: 300 KGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVALPSKLKKIQF----------RECDA 348
           + + ++P +       +  +       L   P +     +  +             +   
Sbjct: 364 Q-ITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 349 LKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEE-GI 407
              L        N  +  +          L+  Q+ +  K L       + ++ +    +
Sbjct: 422 FDPLDPTPFKGIN--VSSI---------NLSNNQISKFPKEL-FSTGSPLSSINLMGNML 469

Query: 408 QSSSSRRYTSSLLEHLHIESCPSLTRI-FSKNELPATLESLEVGNLPPSLKSLSVYGCSK 466
                             ++   LT I    N+L    +      L P L  + +     
Sbjct: 470 TEIPKNSLKDENEN---FKNTYLLTSIDLRFNKLTKLSDDFRATTL-PYLVGIDLSYN-S 524

Query: 467 LESIAERLDNNTSLEYINISNCENL------KILPSGLHNLRQLQEITIQRCGNLESFPE 520
                 +  N+++L+   I N  +       +  P G+     L ++ I    ++    E
Sbjct: 525 FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNE 583

Query: 521 GGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQL 555
              +   ++ L I D   +      +         
Sbjct: 584 K--ITPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.7 bits (158), Expect = 5e-11
 Identities = 70/476 (14%), Positives = 137/476 (28%), Gaps = 77/476 (16%)

Query: 227 LPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCE 286
           L  LE L+++D      +    +     + SLK L +      Q+L           L  
Sbjct: 73  LGSLEHLDLSDNH----LSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQT 127

Query: 287 LS----CRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPS-KLKKI 341
           L          +R     GL  L +  +   SLR  +     S+     + L   +   +
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 342 QFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTL 401
                D L  +    + DTN  L              + ++   + +  V+ +      L
Sbjct: 188 LEIFADILSSVRYLELRDTN--LARFQFSPLPVDEVSSPMKK-LAFRGSVLTDESFNELL 244

Query: 402 TMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSV 461
            +   I            L  +  + C               +  L       +++ L +
Sbjct: 245 KLLRYILE----------LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV-TIRRLHI 293

Query: 462 YGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEG 521
                   ++        ++ I + N +   +  S   +L+ L+ + +     +E + + 
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 522 GLLCAKLTRLTILDC-----KRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLH 576
                    L  L       + ++   + L  L +L  L I +                H
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR-------------NTFH 400

Query: 577 SLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDD-DMVSFPPEPEDVRLGTTLPLPA 635
            +                          ++  +N     +                 +P 
Sbjct: 401 PMP------------------DSCQWPEKMRFLNLSSTGIRVVKTC-----------IPQ 431

Query: 636 SLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYR 691
           +L  L +SN  N   L S  + L  L  LY+    KL+  P+  L   LL + I R
Sbjct: 432 TLEVLDVSN--N--NLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISR 482

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 52/272 (19%), Positives = 97/272 (35%), Gaps = 45/272 (16%)

Query: 427 SCPS----------LTRIFSKNELPATLESLEVGN-----LPPS-------LKSLSVYGC 464
           SC +           T I S   L A ++SL++       +          L+ L +   
Sbjct: 3   SCDASGVCDGRSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 465 SKLESIAER-LDNNTSLEYINISNCENLKILPSG-LHNLRQLQEITIQRCGNLESFPEGG 522
            ++ +I      +  SLE++++S+  +L  L S     L  L+ + +      ++     
Sbjct: 61  -RINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTS 117

Query: 523 LLCAKLTRLTILD---CKRLEALPKG-LHNLTSLQQLTIGKGGELPSLEEDGLP--TNLH 576
           L    LT L  L     +    + +     LTSL +L I K   L + +   L    ++H
Sbjct: 118 LF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI-KALSLRNYQSQSLKSIRDIH 175

Query: 577 SLWIEDNM--EIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLP 634
            L +  +    + +            SS+R L + + +     F P P D        L 
Sbjct: 176 HLTLHLSESAFLLEIF------ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 635 ASLTSLWISNFPNLERLSSSIVDLQNLTSLYL 666
              + L   +F  L +L   I++L  +     
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 34/283 (12%)

Query: 420 LEHLHIESCPSLTR----IFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAER-- 473
           +  +  ++  SL        S N L ++L S   G L  SLK L++ G    +++     
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLS-SLKYLNLMGN-PYQTLGVTSL 118

Query: 474 LDNNTSLEYINISNCENLKILPSG-LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532
             N T+L+ + I N E    +       L  L E+ I+   +L ++    L    +  + 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSL--KSIRDIH 175

Query: 533 ILD--CKRLEALPKG-LHNLTSLQQLTIG----KGGELPSLEEDGLPTNLHSLWIEDNME 585
            L         L +     L+S++ L +        +   L  D + + +  L    ++ 
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 586 IWKSMIERGRGFHRFSSLRRLTIINC-DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISN 644
             +S  E  +       L  +   +C  + +  F P   DV          ++  L I  
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 645 -------------FPNLERLSSSIVDLQNLTSLYLLDCPKLRY 674
                           ++R++     +  +   +      L +
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 68/505 (13%), Positives = 153/505 (30%), Gaps = 84/505 (16%)

Query: 226 RLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLC 285
            + +L   +I  + +   +  SHN     I  L         +L+ L          +L 
Sbjct: 32  YISELWTSDILSLSKLRILIISHNR----IQYLDISVFKFNQELEYLDL-----SHNKLV 82

Query: 286 ELSCR----LEYLRLRYCKGLVKLPQSSL--SLSSLREIEIYKCSSLVSFPEVALPSKLK 339
           ++SC     L++L L +      LP      ++S L+ + +                 L+
Sbjct: 83  KISCHPTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTT-------------HLE 128

Query: 340 KIQFRECDALKLLPEAWMSDTN-------SSLEILSIWVCHSLTYLAGVQLPRSLKRLVI 392
           K        L +     +             L+  +    H +           +  + +
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK--EFHFILDVSV 186

Query: 393 LNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNL 452
               N+    ++  ++ +    + S L +        +LT + +      +   +     
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT-LNNIETTWNSFIRILQLVW 245

Query: 453 PPSLKSLSVYGCSKLESIAERLDN--NTSLEYINISNCEN--LKILPSGLHNLRQLQEIT 508
             ++   S+        +  R  +   TSL+ ++I    +       S ++       + 
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE--IFSNMN 303

Query: 509 IQR--CGNLESFPEGGLLCAKLTRLTILDC--KRLEALPKG-LHNLTSLQQLTIGKGGEL 563
           I+                 +K++    LD     L         +LT L+ L + +  +L
Sbjct: 304 IKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL-QMNQL 360

Query: 564 PSLEE-----DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSF 618
             L +       +  +L  L I  N       +         S  + L  +N   +    
Sbjct: 361 KELSKIAEMTTQM-KSLQQLDISQNS------VSYDEKKGDCSWTKSLLSLNMSSN--IL 411

Query: 619 PPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEK 678
                         LP  +  L + +   ++ +   +V L+ L  L +    +L+  P+ 
Sbjct: 412 TDTIFRC-------LPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPDG 462

Query: 679 GLPS--SLLQLHIYR------CPLI 695
                 SL ++ ++       CP I
Sbjct: 463 IFDRLTSLQKIWLHTNPWDCSCPRI 487

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 71/466 (15%), Positives = 132/466 (28%), Gaps = 93/466 (19%)

Query: 136 FPKLRELHVIRCSKLQ-----------------GTFPEHLPALEMLAIEKC----EELLA 174
           FPK+R + +                                 LE + +++     + L  
Sbjct: 65  FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124

Query: 175 SITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELE 234
                     L +  C+      STD L +                  +      L+EL+
Sbjct: 125 IAKSFKNFKVLVLSSCEGF----STDGLAA------------------IAATCRNLKELD 162

Query: 235 INDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYL 294
           + +           +       SL  L I       S  A E      +L      L+ L
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE------RLVTRCPNLKSL 216

Query: 295 RLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPE 354
           +L     L KL         L E+     ++ V     +  S         C  L+ L  
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA----LSGCKELRCLSG 272

Query: 355 AWMSDTNSSLEILSIWVCHSLTYL----------AGVQLPRSLKRLVILN-CDNIRTLTM 403
            W     + L  +   VC  LT L            V+L     +L  L   D I     
Sbjct: 273 FW-DAVPAYLPAVYS-VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE---- 326

Query: 404 EEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYG 463
           + G++  +S       L  L +          +       L S+      P L+S+ +Y 
Sbjct: 327 DAGLEVLAST---CKDLRELRVFPSEPFVMEPNVALTEQGLVSV--SMGCPKLESV-LYF 380

Query: 464 CSKL--ESIAERLDNNTSLEYINISNCENLKI-----------LPSGLHNLRQLQEITIQ 510
           C ++   ++     N  ++    +   E                 + + + + L+ +++ 
Sbjct: 381 CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS 440

Query: 511 RCGNLESFPEGGLLCAKLTRLTILDCKR----LEALPKGLHNLTSL 552
                + F   G    K+  L++         +  +  G  +L  L
Sbjct: 441 GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL 486

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.2 bits (151), Expect = 4e-10
 Identities = 71/487 (14%), Positives = 139/487 (28%), Gaps = 88/487 (18%)

Query: 78  PSLKHLAVSGMSKVKRLGSEFYGNDSST---------PFPCLETLRFEDMEEWEDWIPHG 128
           P ++ + + G            G               +  LE +R + M   +D +   
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125

Query: 129 SSQGVEGFPKLRELHVIRCSKLQGT----FPEHLPALEMLAIEKC-------EELLASIT 177
           +    + F   + L +  C                 L+ L + +          L     
Sbjct: 126 A----KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181

Query: 178 CLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCG-----DTSNQVFLTG--PLKPRLPKL 230
              +L  L I      V  S+ + L ++    C        +  V L     L  R P+L
Sbjct: 182 TYTSLVSLNISCLASEVSFSALERLVTR----CPNLKSLKLNRAVPLEKLATLLQRAPQL 237

Query: 231 EELEINDMKEQT--YIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELS 288
           EEL       +    ++   +  L     L+ L+         L A         +  + 
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA---------VYSVC 288

Query: 289 CRLEYLRLRYC----KGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP-SKLKKIQF 343
            RL  L L Y       LVKL         L+ + +           +A     L++++ 
Sbjct: 289 SRLTTLNLSYATVQSYDLVKL---LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRV 345

Query: 344 RECDALKLLPEAWMSDTN--------SSLEILSIWVCHSLTYLAGVQLPRSLKRLVILN- 394
              +   + P   +++            LE +  + C  +T  A + + R+   +     
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRL 404

Query: 395 -------CDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESL 447
                   D +    ++ G  +          L  L +    +                 
Sbjct: 405 CIIEPKAPDYLTLEPLDIGFGAIVEH---CKDLRRLSLSGLLTDKVF------------E 449

Query: 448 EVGNLPPSLKSLSVYGCS-KLESIAERLDNNTSLEYINISNCENL-KILPSGLHNLRQLQ 505
            +G     ++ LSV         +   L    SL  + I +C    K L +    L  ++
Sbjct: 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509

Query: 506 EITIQRC 512
            + +  C
Sbjct: 510 SLWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 38/273 (13%), Positives = 90/273 (32%), Gaps = 46/273 (16%)

Query: 309 SLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALK---LLPEAWMSDTNSSLE 365
            +     R++ I  C ++     +    K++ ++ +         L+P+ W       +E
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 98

Query: 366 ILSIWVCHSLTYL---------AGVQ-LPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRY 415
            +S      L  +           ++ + +S K   +L   +    +  +G+ + ++   
Sbjct: 99  AMSSS-YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS-TDGLAAIAAT-- 154

Query: 416 TSSLLEHLHIESCPSLTRIFSKNELPATLESL-EVGNLPPSLKSLSVYGCSK------LE 468
               L+ L +            +    +   L    +   SL SL++   +       LE
Sbjct: 155 -CRNLKELDLRES---------DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204

Query: 469 SIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNL---ESFPEGGLLC 525
            +  R     +L+ + ++    L+ L + L    QL+E+           + +    +  
Sbjct: 205 RLVTRC---PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261

Query: 526 AKLTRLTILDCKR------LEALPKGLHNLTSL 552
           +    L  L          L A+      LT+L
Sbjct: 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.8 bits (142), Expect = 4e-09
 Identities = 74/508 (14%), Positives = 137/508 (26%), Gaps = 111/508 (21%)

Query: 226 RLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLC 285
           R PK+  +E+             +     +         S   L+               
Sbjct: 64  RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEE-------------- 109

Query: 286 ELSCRLEYLRLRYCK----GLVKLPQSSLSLSSLREIEIYKCSSL--VSFPEVALP-SKL 338
                   +RL+        L  +   + S  + + + +  C          +A     L
Sbjct: 110 --------IRLKRMVVTDDCLELI---AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158

Query: 339 KKIQFRECDALKLLPEAW--MSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCD 396
           K++  RE D   +         DT +SL  L+I    S    + +         ++  C 
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL-------ERLVTRCP 211

Query: 397 NIRTLTMEEGIQSSSSRRYTSSL--LEHLHIESCPSLTRIFSKNELPATLESLEVGNLPP 454
           N+++L +   +              LE L      +  R    + L   L          
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC------K 265

Query: 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENL-KILPSGLHNLRQLQEITIQRCG 513
            L+ LS +  +    +       + L  +N+S        L   L    +LQ + +    
Sbjct: 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325

Query: 514 NLESFPEGGLLCAKLTRLTILDCKR-------------LEALPKGLHNLTSL----QQLT 556
                      C  L  L +   +              L ++  G   L S+    +Q+T
Sbjct: 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385

Query: 557 ------IGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610
                 I +    P++    L            +E        G        LRRL++  
Sbjct: 386 NAALITIARN--RPNMTRFRLCIIEPKAPDYLTLEPLDIGF--GAIVEHCKDLRRLSLSG 441

Query: 611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLD-C 669
              D                         +  +    +E LS +     +L   ++L  C
Sbjct: 442 LLTD--------------------KVFEYI-GTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480

Query: 670 PKLRYFPEKGLPSSLLQLHIYRCPLIEE 697
             LR             L I  CP  ++
Sbjct: 481 DSLRK------------LEIRDCPFGDK 496

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.8 bits (142), Expect = 5e-09
 Identities = 51/361 (14%), Positives = 101/361 (27%), Gaps = 38/361 (10%)

Query: 355 AWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRR 414
           +W          + I  C++++    ++    ++ + +    +         +       
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF----NLVPDGWGG 91

Query: 415 YTSSLLEHLHIESCPSLTRIFSKNELPATLESLE-VGNLPPSLKSLSVYGCSKL--ESIA 471
           Y    +E +   S   L  I  K  +  T + LE +     + K L +  C     + +A
Sbjct: 92  YVYPWIEAMS-SSYTWLEEIRLKR-MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149

Query: 472 ERLDNNTSLEYINISNCENLKILPSGL----HNLRQLQEITIQRCGN------LESFPEG 521
                  +L+ +++   +   +    L         L  + I    +      LE     
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209

Query: 522 GLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEED----GLPTNLHS 577
              C  L  L +     LE L   L     L++L  G        +         +    
Sbjct: 210 ---CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266

Query: 578 LWIEDNM-EIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPAS 636
           L       +   + +     +   S L  L +                V+L    P    
Sbjct: 267 LRCLSGFWDAVPAYLPAV--YSVCSRLTTLNLSYATVQSYDL------VKLLCQCP---K 315

Query: 637 LTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIE 696
           L  LW+ ++     L       ++L  L +         P   L    L      CP +E
Sbjct: 316 LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375

Query: 697 E 697
            
Sbjct: 376 S 376

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 77/495 (15%), Positives = 158/495 (31%), Gaps = 85/495 (17%)

Query: 227 LPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCE 286
           L  L EL +        +    +   +++ +L RL +    +++SL             +
Sbjct: 96  LFHLFELRLYFCGLSDAVL--KDGYFRNLKALTRLDLSKN-QIRSLYLHPS------FGK 146

Query: 287 LSCRLEYLRLRYCKGLVKLPQSS---LSLSSLREIEIYKCS--SLVSFPEVALPSKLKKI 341
           L+  L+ +     + +  + +     L   +L    +   S  S VS       +  + +
Sbjct: 147 LN-SLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 342 QFRECD----ALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDN 397
                D       +      S+  S  +  S+ + H +                     N
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA-------------GFGFHN 251

Query: 398 IRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLK 457
           I+          ++      S + HL +     +  +          E+L        LK
Sbjct: 252 IKD------PDQNTFAGLARSSVRHLDLSHG-FVFSL-----NSRVFETL------KDLK 293

Query: 458 SLSVYGCSKLESIAER-LDNNTSLEYINISNCENLKILPSG-LHNLRQLQEITIQRCGNL 515
            L++    K+  IA+       +L+ +N+S    L  L S   + L ++  I +Q+  ++
Sbjct: 294 VLNLAYN-KINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN-HI 350

Query: 516 ESFPEGGLLCAKLTRLTILD-----------CKRLEALPKGLHNLTSLQQLTIGK----- 559
               +       L +L  LD              +  +    + L +L ++ +       
Sbjct: 351 AIIQDQTF--KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408

Query: 560 -GGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSF 618
               L +L+       +  L I     + ++      G    S    L  +   ++M+  
Sbjct: 409 SENRLENLDILYFLLRVPHLQILI---LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 619 PPEPEDVRLGTTLPLPASLTSLWISNFPN-LERLSSSI-VDLQNLTSLYLLDCPKLRYFP 676
             E E +       L   L  L++++  N L  L   +   L  L  L L    +L    
Sbjct: 466 AWETE-LCWDVFEGLS-HLQVLYLNH--NYLNSLPPGVFSHLTALRGLSLNSN-RLTVLS 520

Query: 677 EKGLPSSLLQLHIYR 691
              LP++L  L I R
Sbjct: 521 HNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 61/479 (12%), Positives = 135/479 (28%), Gaps = 62/479 (12%)

Query: 225 PRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQL 284
             L   E L +       YI          +  L+ L + S     ++  E  ++     
Sbjct: 21  QVLNTTERLLL----SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN-- 74

Query: 285 CELSCRLEYLRLRYCKGLVKLPQSSLS-LSSLREIEIYKCS-SLVSFPEVALP--SKLKK 340
                 L  L L   K +  L   +   L  L E+ +Y C  S     +        L +
Sbjct: 75  ------LRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 341 IQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRT 400
           +   +   ++ L         +SL+ +                P   K L   +      
Sbjct: 128 LDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186

Query: 401 LTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNL--PPSLKS 458
            +            + + +LE L + S    T   + N     +   +  +L     +  
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDV-SGNGWTVDITGN-FSNAISKSQAFSLILAHHIMG 244

Query: 459 LSVYGCSKLESIAERL---DNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNL 515
                   ++   +        +S+ ++++S+     +       L+ L+ + +     +
Sbjct: 245 AGFGF-HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KI 302

Query: 516 ESFPEGGLLCAKLTRLTILDCK--RLEALPKG-LHNLTSLQQLTIGKGGELPSLEEDGLP 572
               +       L  L +L+     L  L     + L  +  + +     +  +++    
Sbjct: 303 NKIADEAF--YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ-KNHIAIIQDQTFK 359

Query: 573 --TNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTT 630
               L +L + DN                   +  +  I    +           +L T 
Sbjct: 360 FLEKLQTLDLRDN------------ALTTIHFIPSIPDIFLSGN-----------KLVTL 396

Query: 631 LPLPASLTSLWISNFPNLERLS--SSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQL 687
             +  +   + +S    LE L     ++ + +L  L L    +         PS    L
Sbjct: 397 PKINLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSL 453

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 64/455 (14%), Positives = 146/455 (32%), Gaps = 69/455 (15%)

Query: 134 EGFPKLRELHV----IRCSKLQGTFPEHLPALEMLAIEKCE----ELLASITCLPALCKL 185
           +G   L EL +    +  + L+  +  +L AL  L + K +     L  S   L +L  +
Sbjct: 94  QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153

Query: 186 KIYGCK-KVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLK----PRLPKLEELEINDMKE 240
                +  +V     + L  +        +N ++    +         +   LEI D+  
Sbjct: 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213

Query: 241 QTYIWKSHNELLQDICSLKRLTIDSCPKLQSL------VAEEEKDQQQQLCELSCRLEYL 294
             +           I   +  ++     +         + + +++    L   S  + +L
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS--VRHL 271

Query: 295 RLRYCKGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVALP--SKLKKIQFRECDALKL 351
            L +   +  L       L  L+ + +     +    + A      L+ +       L  
Sbjct: 272 DLSHGF-VFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNL-LGE 328

Query: 352 LPEAWMSDTNSSLEILSI-------------WVCHSLTYL-------AGVQLPRSLKRLV 391
           L  +        +  + +                  L  L         +    S+  + 
Sbjct: 329 LYSSNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI- 386

Query: 392 ILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESC----PSLTRIF-SKNELPATLES 446
            L+ + + TL   +   +++    + + LE+L I       P L  +  ++N   ++   
Sbjct: 387 FLSGNKLVTL--PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF-SSCSG 443

Query: 447 LEVGNLPPSLKSLSVYGCS-----KLESIAERLDNNTSLEYINISNCENLKILPSG-LHN 500
            +  +  PSL+ L +         + E   +  +  + L+ + +++   L  LP G   +
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSH 502

Query: 501 LRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD 535
           L  L+ +++     L       L       L ILD
Sbjct: 503 LTALRGLSLNSN-RLTVLSHNDL----PANLEILD 532

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 50/254 (19%), Positives = 100/254 (39%), Gaps = 32/254 (12%)

Query: 451 NLPPSLKSLSVYGCSKLESIAER-LDNNTSLEYINISNCENLKILPSGLHNLRQLQEITI 509
            +P   + L +    +++++ +    +   LE + ++      + P   +NL  L+ + +
Sbjct: 29  GIPTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 510 QRCGNLESFPEGGLLCAKLTRLTILDCK--RLEALPKGL-HNLTSLQQLTIGKGGELPSL 566
           +    L+  P G      L+ LT LD    ++  L   +  +L +L+ L +G   +L  +
Sbjct: 88  RSN-RLKLIPLGVF--TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG-DNDLVYI 143

Query: 567 EED---GLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPE 623
                 GL  +L  L +E    +  + I           L  L + +             
Sbjct: 144 SHRAFSGLN-SLEQLTLEKC-NL--TSIPTE-ALSHLHGLIVLRLRHL---------NIN 189

Query: 624 DVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPE---KGL 680
            +R  +   L   L  L IS++P L+ ++ + +   NLTSL +  C  L   P    + L
Sbjct: 190 AIRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHL 247

Query: 681 PSSLLQLHIYRCPL 694
              L  L++   P+
Sbjct: 248 V-YLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 13/137 (9%)

Query: 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSG-LHNLRQLQEITIQRC 512
             LK L +     L+++        +L  ++I++C NL  +P   + +L  L+ + +   
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 513 GNLESFPEGGLLCAKLTRLTILDCK--RLEALPKG-LHNLTSLQQLTIGKGGELPSLEE- 568
             + +     L   +L RL  +     +L  +       L  L+ L +  G +L +LEE 
Sbjct: 259 -PISTIEGSML--HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS-GNQLTTLEES 314

Query: 569 --DGLPTNLHSLWIEDN 583
               +  NL +L ++ N
Sbjct: 315 VFHSVG-NLETLILDSN 330

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 5e-10
 Identities = 64/472 (13%), Positives = 138/472 (29%), Gaps = 74/472 (15%)

Query: 226 RLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRL-------------TIDSCPKLQSL 272
           RL  L  L++        I+  H +  Q    L  L              +     L+ L
Sbjct: 55  RLINLTFLDLTR----CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110

Query: 273 VAEE---EKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLS-LSSLREIEIYKCSSLVS 328
              +          L      LE L L     +  +          L+ ++    + +  
Sbjct: 111 FFIQTGISSIDFIPLHNQK-TLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNA-IHY 167

Query: 329 FPEVALPSKLKKIQFRECD----ALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLP 384
             +  + S L++      +     +  +        ++  + L+     +L  +      
Sbjct: 168 LSKEDMSS-LQQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQNLLVIFKGLKN 224

Query: 385 RSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATL 444
            +++ L +   +++    +   +            +E ++            K+     +
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMS----VESIN----------LQKHYF-FNI 269

Query: 445 ESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQL 504
            S         L+ L +     L  +   L   ++L+ + +S  +   +      N   L
Sbjct: 270 SSNTFHCFS-GLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 505 QEITIQRCGNLESFPEGGLLCAKLTRLTILD-----CKRLEALPKGLHNLTSLQQLTIG- 558
             ++I+          G L    L  L  LD      +  +     L NL+ LQ L +  
Sbjct: 328 THLSIKGNTKRLELGTGCL--ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 559 -KGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVS 617
            +   L +      P  L  L +          ++       F +L  L ++N    ++ 
Sbjct: 386 NEPLSLKTEAFKECP-QLELLDLAFT------RLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 618 FPPEPEDVRLGTTLPLPASLTSLWISN---FPNLERLSSSIVDLQNLTSLYL 666
              E           LP +L  L +          + ++S+  L  L  L L
Sbjct: 439 ISSE------QLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 38/248 (15%), Positives = 76/248 (30%), Gaps = 28/248 (11%)

Query: 450 GNLPPSLKSLSVYGCSKLESIAER-LDNNTSLEYINISNCENLKILPSGLHNLRQLQEIT 508
           G LP S + L       L +I         +L +++++ C+   I      +  +L  + 
Sbjct: 29  GTLPNSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 509 IQRCGNLESFPEGGLLCAKLTRLTILDCK--RLEALPKG-LHNLTSLQQLTIG--KGGEL 563
           +     L    E  L  +    L  L      + ++    LHN  +L+ L +G      +
Sbjct: 88  LTAN-PLIFMAETAL--SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 564 PSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPE 623
              +       L  L  ++N  I    + +            L++    +D+    P   
Sbjct: 145 KLPKGFPTE-KLKVLDFQNN-AI--HYLSKE-DMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 624 DVRLGTTLPLPASLTSLWISNFPNLERLSSSIV--DLQNLTSLYLLDCPKLRYFPEKGLP 681
           D              SL      NL  +   +    +Q+L      D           + 
Sbjct: 200 DSA---------VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM-DDEDISP-AVF 248

Query: 682 SSLLQLHI 689
             L ++ +
Sbjct: 249 EGLCEMSV 256

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 36/228 (15%), Positives = 67/228 (29%), Gaps = 52/228 (22%)

Query: 478 TSLEYINISNCENLKILPSG-LHNLRQLQEITIQRCGNLESFPEG---GLLCAKLTRLTI 533
            S + + +    +L+ +PS    NL  +  I +     L+         L  +K+T + I
Sbjct: 31  PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL--SKVTHIEI 87

Query: 534 LDCKRLEALPKG-LHNLTSLQQLTIGKGG--ELPSLEEDGLPTNLHSLWIEDNMEIWKSM 590
            + + L  +    L  L  L+ L I   G    P L +         L I DN  +    
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM---- 143

Query: 591 IERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPN-LE 649
                                             + +     L     +L + N  N   
Sbjct: 144 --------------------------------TSIPVNAFQGLCNETLTLKLYN--NGFT 169

Query: 650 RLSSSIVDLQNLTSLYLLDCPKLRYFPE---KGLPSSLLQLHIYRCPL 694
            +     +   L ++YL     L    +    G+ S    L + +  +
Sbjct: 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 55/228 (24%)

Query: 427 SCPSLTRIFSKNELPATLESLEVGNLP------------PSLKSLSVYGCSKLESIAERL 474
           +C  + RI S   LP + ++L++                P++  + V     L+ +    
Sbjct: 19  TCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS 75

Query: 475 -DNNTSLEYINISNCENLKILPSG-LHNLRQLQEITIQRCGNLESFPEGGLL--CAKLTR 530
             N + + +I I N  NL  +    L  L  L+ + I   G L+ FP+   +        
Sbjct: 76  FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFI 134

Query: 531 LTILDCKRLEALP----KGLHNL---------------------TSLQQLTIGKGGELPS 565
           L I D   + ++P    +GL N                      T L  + + K   L  
Sbjct: 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTV 194

Query: 566 LEED---GLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610
           +++D   G+ +    L +     +  + +           L+ L   N
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQT-SV--TALPSK----GLEHLKELIARN 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 9e-10
 Identities = 65/388 (16%), Positives = 132/388 (34%), Gaps = 79/388 (20%)

Query: 291 LEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFREC---- 346
           L  +     + L  +     +L+ L +I +     +     +A  + L  +         
Sbjct: 70  LTQINFSNNQ-LTDITPLK-NLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQITD 126

Query: 347 -DALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEE 405
            D LK L         ++L  L +    S   ++ +     L  L  L+  N        
Sbjct: 127 IDPLKNL---------TNLNRLEL----SSNTISDISALSGLTSLQQLSFGN-------- 165

Query: 406 GIQSSSSRRYTSSLLEHLHIESCPSLTRIF-SKNELPATLESLEVGNLPPSLKSLSVYGC 464
                        + +   + +  +L R+  S N++ + +  L    L  +L+SL     
Sbjct: 166 ------------QVTDLKPLANLTTLERLDISSNKV-SDISVL--AKLT-NLESLIATNN 209

Query: 465 SKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLL 524
            ++  I   L   T+L+ ++++    LK + + L +L  L ++ +     + +       
Sbjct: 210 -QISDITP-LGILTNLDELSLNGN-QLKDIGT-LASLTNLTDLDLANN-QISNLAP---- 260

Query: 525 CAKLTRLTILDCK--RLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIED 582
            + LT+LT L     ++  +   L  LT+L  L +    +L  +       NL  L +  
Sbjct: 261 LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELN-ENQLEDISPISNLKNLTYLTLYF 318

Query: 583 NMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWI 642
           N                 SSL +L  +   ++ VS             L    ++  L  
Sbjct: 319 N---------NISDISPVSSLTKLQRLFFYNNKVSDVSS---------LANLTNINWLSA 360

Query: 643 SNFPNLERLSSSIVDLQNLTSLYLLDCP 670
            +  N     + + +L  +T L L D  
Sbjct: 361 GH--NQISDLTPLANLTRITQLGLNDQA 386

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 59/291 (20%), Positives = 99/291 (34%), Gaps = 54/291 (18%)

Query: 425 IESCPSLTRI-FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYI 483
           +E   +LT+I FS N+L   +  L   NL   L  + +    ++  I   L N T+L  +
Sbjct: 64  VEYLNNLTQINFSNNQL-TDITPL--KNLT-KLVDILMNNN-QIADITP-LANLTNLTGL 117

Query: 484 NISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALP 543
            + N +   I    L NL  L  + +     +            LT L  L         
Sbjct: 118 TLFNNQITDI--DPLKNLTNLNRLELSSN-TISDISALS----GLTSLQQLSFGNQVTDL 170

Query: 544 KGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSL 603
           K L NLT+L++L I    ++  +      TNL SL   +N +I                L
Sbjct: 171 KPLANLTTLERLDIS-SNKVSDISVLAKLTNLESLIATNN-QI--------SDITPLGIL 220

Query: 604 RRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWIS-----------NFPNLERLS 652
             L  ++ + + +        +          +LT L ++               L  L 
Sbjct: 221 TNLDELSLNGNQLKDIGTLASLT---------NLTDLDLANNQISNLAPLSGLTKLTELK 271

Query: 653 ---------SSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPL 694
                    S +  L  LT+L L +  +L          +L  L +Y   +
Sbjct: 272 LGANQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNI 321

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 33/287 (11%), Positives = 80/287 (27%), Gaps = 52/287 (18%)

Query: 469 SIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKL 528
           +I E   N    +   +++    + L S   +   ++E+ +     L       L  A  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADL--APF 57

Query: 529 TRLTILDCK--RLEALPKGLHNLTSLQQL--------TIGKGGELPSLE---------ED 569
           T+L +L+     L      L +L++L+ L         +  G  + +L            
Sbjct: 58  TKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC 116

Query: 570 GLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDD-DMVSFPPEPEDVRLG 628
                  ++++ +N +I  +M+             R+  ++    ++ +           
Sbjct: 117 SRGQGKKNIYLANN-KI--TMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 629 ------------TTLPLPASLTSLWI----SNFPNLERLSSSIVDLQNLTSLYLLDCPKL 672
                         +        L      SN   L  +         +T + L +  KL
Sbjct: 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNN-KL 226

Query: 673 RYFPEK-GLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTHIPYARI 718
               +      +L    +           +D       +  +    +
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 37/258 (14%), Positives = 77/258 (29%), Gaps = 49/258 (18%)

Query: 454 PSLKSLSVYGCSKLESI-AERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRC 512
            ++K L + G   L  I A  L   T LE +N+S+   L      L +L  L+ + +   
Sbjct: 34  WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNN 90

Query: 513 GNLESFPEGGLLCAKLTRLTILDCK--RLEALPKG-LHNLTSLQ----QLTIGKGGELPS 565
             ++              +  L      +  +         ++     ++T      L  
Sbjct: 91  -YVQELLV-------GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT-----MLRD 137

Query: 566 LEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEP--- 622
           L+E      +  L ++ N EI    +          +L  L +      +     +    
Sbjct: 138 LDEGCRS-RVQYLDLKLN-EI--DTVNFAELAASSDTLEHLNLQYNF--IYDVKGQVVFA 191

Query: 623 --EDVRLG----TTLP-----LPASLTSLWISNFPN-LERLSSSIVDLQNLTSLYLLDCP 670
             + + L       +          +T + + N  N L  +  ++   QNL    L    
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAA-GVTWISLRN--NKLVLIEKALRFSQNLEHFDLRGNG 248

Query: 671 KLRYFPEKGLPSSLLQLH 688
                  +   S   ++ 
Sbjct: 249 -FHCGTLRDFFSKNQRVQ 265

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 16/143 (11%), Positives = 52/143 (36%), Gaps = 14/143 (9%)

Query: 420 LEHLHIESCPSLTRIF-SKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAER--LDN 476
           +  +          I+ + N++   L  L+ G     ++ L +    +++++       +
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKI-TMLRDLDEGCRS-RVQYLDLKLN-EIDTVNFAELAAS 167

Query: 477 NTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDC 536
           + +LE++N+     +  +   +    +L+ + +     L               +T +  
Sbjct: 168 SDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSN-KLAFMGPE---FQSAAGVTWISL 221

Query: 537 K--RLEALPKGLHNLTSLQQLTI 557
           +  +L  + K L    +L+   +
Sbjct: 222 RNNKLVLIEKALRFSQNLEHFDL 244

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 42/193 (21%), Positives = 74/193 (38%), Gaps = 28/193 (14%)

Query: 439 ELPATLESLEVGNLPPSLKSLSVYGCSKLESIAER--LDNNTSLEYINISNCENLKILPS 496
            + +    L        L+ L       L+ ++E     +  +L Y++IS+  + ++  +
Sbjct: 92  TMSSNFLGL------EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN 143

Query: 497 G-LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCK--RLEALPKG-LHNLTSL 552
           G  + L  L+ + +      E+F        +L  LT LD    +LE L     ++L+SL
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 553 QQLTIGKGGELPSLEE---DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI- 608
           Q L +       SL+      L  +L  L    N  I     ++    H  SSL  L + 
Sbjct: 202 QVLNMS-HNNFFSLDTFPYKCLN-SLQVLDYSLNH-I--MTSKKQELQHFPSSLAFLNLT 256

Query: 609 ---INCDDDMVSF 618
                C  +  SF
Sbjct: 257 QNDFACTCEHQSF 269

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 79/440 (17%), Positives = 149/440 (33%), Gaps = 62/440 (14%)

Query: 286 ELSCRLEYLRLRYCKGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVALP--SKLKKIQ 342
            L    + L L +   L  L   S      L+ +++ +C  + +  + A    S L  + 
Sbjct: 25  NLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLI 82

Query: 343 FRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDN--IRT 400
                 ++ L     S   SSL+ L     + L  L    +   LK L  LN  +  I++
Sbjct: 83  LTGN-PIQSLALGAFSG-LSSLQKLVAVETN-LASLENFPI-GHLKTLKELNVAHNLIQS 138

Query: 401 LTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLS 460
             + E   + ++       LEHL + S   +  I         L  L    +P    SL 
Sbjct: 139 FKLPEYFSNLTN-------LEHLDLSSNK-IQSI-----YCTDLRVL--HQMPLLNLSLD 183

Query: 461 VYGCSKLESIAERLDNNTSLEYINIS-NCENLKILPSGLHNLRQLQEIT-----IQRCGN 514
           +     +  I         L  + +  N ++L ++ + +  L  L+         +  GN
Sbjct: 184 LSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 515 LESFPEGGL-----LCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEED 569
           LE F +  L     L  +  RL  LD    + +    + LT++   ++     +  +++ 
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDD-IIDLFNCLTNVSSFSL-VSVTIERVKDF 300

Query: 570 GLPTNLHSLWIEDNMEIWKSMIE------------RGRGFHRFSSLRRLTIINCDDDMVS 617
                   L + +        ++            +G        L  L  ++   + +S
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 618 FPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPE 677
           F         GTT     SL  L +S    +  +SS+ + L+ L  L       L+   E
Sbjct: 361 FKGCCSQSDFGTT-----SLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSE 413

Query: 678 KGL---PSSLLQLHIYRCPL 694
             +     +L+ L I     
Sbjct: 414 FSVFLSLRNLIYLDISHTHT 433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 68/370 (18%), Positives = 142/370 (38%), Gaps = 51/370 (13%)

Query: 226 RLPKLEELEINDMKEQTYIWKSHNELLQ--DICSLKRLTIDSCPKLQSLVAEEEKDQQQQ 283
           +  +L +L + +  +   + K+  + L   ++  L      +   L+      +K   + 
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF----DKSALEG 253

Query: 284 LCELSCRLEYLRLRYCKGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVALPSKLKKIQ 342
           LC L+  +E  RL Y    +       + L+++    +   + +    + +     + ++
Sbjct: 254 LCNLT--IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLE 310

Query: 343 FRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLT 402
              C      P   +     SL+ L+          + V LP SL+ L  L+ + +    
Sbjct: 311 LVNCK-FGQFPTLKLK----SLKRLTFTSNKGGNAFSEVDLP-SLEFL-DLSRNGLSFK- 362

Query: 403 MEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVY 462
              G  S S    TS  L++L +     +  +       +    L        L+ L   
Sbjct: 363 ---GCCSQSDFGTTS--LKYLDLSFN-GVITM------SSNFLGL------EQLEHLDFQ 404

Query: 463 GCSKLESIAER--LDNNTSLEYINISNCENLKILPSG-LHNLRQLQEITIQRCGNLESFP 519
               L+ ++E     +  +L Y++IS+  + ++  +G  + L  L+ + +      E+F 
Sbjct: 405 HS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 520 EGGLLCAKLTRLTILD---CKRLEALPKG-LHNLTSLQQLTIGKGGELPSLEEDGLP--T 573
                  +L  LT LD   C+ LE L     ++L+SLQ L +    +L S+ +      T
Sbjct: 463 PDIF--TELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMA-SNQLKSVPDGIFDRLT 518

Query: 574 NLHSLWIEDN 583
           +L  +W+  N
Sbjct: 519 SLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 85/502 (16%), Positives = 151/502 (30%), Gaps = 86/502 (17%)

Query: 226 RLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLC 285
             P+L+ L+++       I    +   Q +  L  L +     +QSL             
Sbjct: 50  SFPELQVLDLSR----CEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALG-------AFS 97

Query: 286 ELSCRLEYLRLRYCKGLVKLPQSSLS-LSSLREIEIY--KCSSLVSFPEVALPSKLKKIQ 342
            LS  L+ L       L  L    +  L +L+E+ +      S       +  + L+ + 
Sbjct: 98  GLS-SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 343 FRECDALKLLPEAWMSDTNSSLEILSIWVCH-SLTYL-AGVQLPRSLKRLVILNCDNIRT 400
                   +            L  LS+ +    + ++  G      L +L + N  N  +
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN--NFDS 213

Query: 401 LTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLS 460
           L + +      +      L       +  +L +          L +L +      L  L 
Sbjct: 214 LNVMKTCIQGLAGLEVHRL-VLGEFRNEGNLEKF--DKSALEGLCNLTIEEF--RLAYLD 268

Query: 461 VYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPE 520
            Y    L+ I +  +  T++   ++ +    ++           Q + +  C     FP 
Sbjct: 269 YY----LDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNC-KFGQFPT 321

Query: 521 GGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGK----GGELPSLEEDGLPTNLH 576
             L    L RLT    K   A      +L SL+ L + +         S  + G   +L 
Sbjct: 322 LKL--KSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLK 376

Query: 577 SLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPAS 636
            L +  N      +I     F     L  L   + +  +               L L  +
Sbjct: 377 YLDLSFN-----GVITMSSNFLGLEQLEHLDFQHSN--LKQMSEF------SVFLSLR-N 422

Query: 637 LTSLWISN----------FPNLERL---------------SSSIVDLQNLTSLYLLDCPK 671
           L  L IS+          F  L  L                    +L+NLT L L  C +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-Q 481

Query: 672 LRYFPE---KGLPSSLLQLHIY 690
           L          L  SL  L++ 
Sbjct: 482 LEQLSPTAFNSLS-SLQVLNMA 502

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 82/503 (16%), Positives = 169/503 (33%), Gaps = 91/503 (18%)

Query: 227 LPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCE 286
              L++LE++       I +        I  L  L +++  +L   + E+   +      
Sbjct: 170 NSSLKKLELSS----NQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANT-- 222

Query: 287 LSCRLEYLRLRYCKGLVKLPQSS---LSLSSLREIEIYKCSSLVSFPEVALP--SKLKKI 341
               +  L L   + L     ++   L  ++L  +++   + L      +     +L+  
Sbjct: 223 ---SIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYF 277

Query: 342 QFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTL 401
                + ++ L    +     ++  L++    +   ++   LP  +          +  L
Sbjct: 278 FLEYNN-IQHLFSHSLHGL-FNVRYLNLKRSFTKQSISLASLP-KIDDFSFQWLKCLEHL 334

Query: 402 TME----EGIQSSSSRRYTSSLLEHLHI-ESCPSLTRIFSKNELPATLESLEV----GNL 452
            ME     GI+S+      +  L++L +  S  SL  + ++  +      L +     N 
Sbjct: 335 NMEDNDIPGIKSNMFTGLIN--LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 453 PPSLKSLSVYGCSKLESIAERLDNN--------------TSLEYINISNCENLKILPSGL 498
              ++S +      LE +   L  N               ++  I +S  + L++  +  
Sbjct: 393 ISKIESDAFSWLGHLEVL--DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 499 HNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCK--RLEALPKG-LHNLTSLQQL 555
             +  LQ + ++R   L++          L  LTILD     +  +    L  L  L+ L
Sbjct: 451 ALVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 556 TI----------GKGGELPSLEEDGLPTNLHSLWIEDNM--EIWKSMIERGRGFHRFSSL 603
            +                P     GL ++LH L +E N   EI   +         F  L
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGL-SHLHILNLESNGFDEIPVEV---------FKDL 559

Query: 604 RRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPN-LERLSSSIVD--LQN 660
             L II+   + ++  P        +      SL SL +    N +  +   +     +N
Sbjct: 560 FELKIIDLGLNNLNTLPA-------SVFNNQVSLKSLNLQK--NLITSVEKKVFGPAFRN 610

Query: 661 LTSLYLL------DCPKLRYFPE 677
           LT L +        C  + +F  
Sbjct: 611 LTELDMRFNPFDCTCESIAWFVN 633

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 63/403 (15%), Positives = 116/403 (28%), Gaps = 69/403 (17%)

Query: 288 SCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP--SKLKKIQFRE 345
           +   E     +   L ++P    +  ++  + +     L   P       S+L  +    
Sbjct: 3   TVSHEVADCSHL-KLTQVPDDLPT--NITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGF 58

Query: 346 CDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEE 405
               KL PE         L++L          L   +L   L       C N+  L +  
Sbjct: 59  NTISKLEPELCQK--LPMLKVL---------NLQHNEL-SQLSDKTFAFCTNLTELHLMS 106

Query: 406 -GIQSSSSRRYTSSLLEHLHIESCPSLTRIF-SKNELPATLESLEVGNLPPSLKSLSVYG 463
             IQ           +++       +L  +  S N L ++ +      L  +L+ L +  
Sbjct: 107 NSIQK----------IKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLE-NLQELLLSN 154

Query: 464 C--SKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEG 521
                L+S    +  N+SL+ + +S+ +  +  P   H + +L  + +       S  E 
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 522 GLLCAKLTRLTILDCK--RLEALPKGL---HNLTSLQQLTIGKGGELPSLEEDGLP--TN 574
             L    T +  L     +L             T+L  L +     L  +  D       
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS-YNNLNVVGNDSFAWLPQ 273

Query: 575 LHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLP 634
           L   ++E N         +    H    L  +  +N              +         
Sbjct: 274 LEYFFLEYNN-------IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP-------- 318

Query: 635 ASLTSLWISNFPNLERL-----------SSSIVDLQNLTSLYL 666
             +          LE L           S+    L NL  L L
Sbjct: 319 -KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 3e-08
 Identities = 55/269 (20%), Positives = 99/269 (36%), Gaps = 61/269 (22%)

Query: 425 IESCPSLTRI-FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYI 483
           + +   LT +    N++   + +L   NL  +L+ L +     +  I+  L N T +  +
Sbjct: 84  LSNLVKLTNLYIGTNKI-TDISAL--QNLT-NLRELYLNED-NISDISP-LANLTKMYSL 137

Query: 484 NISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCK--RLEA 541
           N+    NL    S L N+  L  +T+     ++           LT L  L     ++E 
Sbjct: 138 NLGANHNLSD-LSPLSNMTGLNYLTVTES-KVKDVTPIA----NLTDLYSLSLNYNQIED 191

Query: 542 LPKGLHNLTSLQQLTIG--KGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHR 599
           +   L +LTSL   T    +  ++  +    + T L+SL I +N +I             
Sbjct: 192 IS-PLASLTSLHYFTAYVNQITDITPVA--NM-TRLNSLKIGNN-KI--------TDLSP 238

Query: 600 FSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLW-----------ISNFPNL 648
            ++L +LT +    + +S     +D+           L  L            ++N   L
Sbjct: 239 LANLSQLTWLEIGTNQISDINAVKDLT---------KLKMLNVGSNQISDISVLNNLSQL 289

Query: 649 ERLS-----------SSIVDLQNLTSLYL 666
             L              I  L NLT+L+L
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 49/257 (19%), Positives = 94/257 (36%), Gaps = 61/257 (23%)

Query: 425 IESCPSLTRI-FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYI 483
            E   S+T++  +  ++ A+++ +E      +L+ L++ G  ++  I+  L N   L  +
Sbjct: 40  QEELESITKLVVAGEKV-ASIQGIE---YLTNLEYLNLNGN-QITDISP-LSNLVKLTNL 93

Query: 484 NISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCK--RLEA 541
            I     +  + + L NL  L+E+ +    N+            LT++  L+       +
Sbjct: 94  YIGTN-KITDISA-LQNLTNLRELYLNED-NISDISPLA----NLTKMYSLNLGANHNLS 146

Query: 542 LPKGLHNLTSLQQLTIG--KGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHR 599
               L N+T L  LT+   K  ++  +    L T+L+SL +  N       IE       
Sbjct: 147 DLSPLSNMTGLNYLTVTESKVKDVTPIA--NL-TDLYSLSLNYN------QIEDISPLAS 197

Query: 600 FSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSL-WISNFPNLERLS------ 652
            +SL   T                             +T +  ++N   L  L       
Sbjct: 198 LTSLHYFTAYVN------------------------QITDITPVANMTRLNSLKIGNNKI 233

Query: 653 ---SSIVDLQNLTSLYL 666
              S + +L  LT L +
Sbjct: 234 TDLSPLANLSQLTWLEI 250

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 7e-06
 Identities = 45/313 (14%), Positives = 104/313 (33%), Gaps = 57/313 (18%)

Query: 291 LEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKI-----QFRE 345
           LEYL L   + +  +   S +L  L  + I     +     +   + L+++        +
Sbjct: 68  LEYLNLNGNQ-ITDISPLS-NLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDNISD 124

Query: 346 CDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEE 405
              L  L           +  L++   H+L+ L+ +    ++  L  L     + +    
Sbjct: 125 ISPLANLT---------KMYSLNLGANHNLSDLSPLS---NMTGLNYLTVTESK-VKDVT 171

Query: 406 GIQSSSSRRYTSSLLEHLH-----------IESCPSLTRIF-SKNELPATLESLEVGNLP 453
            I + +        L  L            + S  SL       N++   +  +   N+ 
Sbjct: 172 PIANLTD-------LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI-TDITPV--ANMT 221

Query: 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCG 513
             L SL +    K+  ++  L N + L ++ I     +  +   + +L +L+ + +    
Sbjct: 222 -RLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN- 275

Query: 514 NLESFPEGGLLCAKLTRLTILDCK--RLEAL-PKGLHNLTSLQQLTIGKGGELPSLEEDG 570
            +            L++L  L     +L     + +  LT+L  L +     +  +    
Sbjct: 276 QISDISV----LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS-QNHITDIRPLA 330

Query: 571 LPTNLHSLWIEDN 583
             + + S    + 
Sbjct: 331 SLSKMDSADFANQ 343

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 48/290 (16%), Positives = 104/290 (35%), Gaps = 42/290 (14%)

Query: 395 CDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPP 454
             N++   +   +      +      E + + +   +T  F  + +   L +  + +   
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVT--FKNSTM-RKLPAALLDSFR- 75

Query: 455 SLKSLSVYGCSKLESIAER-LDNNTSLEYINISNCENLKILPSG-LHNLRQLQEITIQRC 512
            ++ L++    ++E I         +++ + +     ++ LP     N+  L  + ++R 
Sbjct: 76  QVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN 133

Query: 513 GNLESFPEGGLLCAKLTRLTILDCK--RLEALPKG-LHNLTSLQQLTIGKGGELPSLEED 569
            +L S P G  +     +LT L      LE +        TSLQ L +     L  ++  
Sbjct: 134 -DLSSLPRG--IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS-SNRLTHVDLS 189

Query: 570 GLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGT 629
            +P +L    +  N+                +    +  ++   + ++    P +V L T
Sbjct: 190 LIP-SLFHANVSYNL------------LSTLAIPIAVEELDASHNSINVVRGPVNVEL-T 235

Query: 630 TLPLPA-SLTSL-WISNFPNLERLS-----------SSIVDLQNLTSLYL 666
            L L   +LT   W+ N+P L  +               V +Q L  LY+
Sbjct: 236 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 57/352 (16%), Positives = 122/352 (34%), Gaps = 58/352 (16%)

Query: 290 RLEYLRLRYCKGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVALP--SKLKKIQFREC 346
             + +  +    + KLP + L     +  + +     +      A      ++K+     
Sbjct: 52  NQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN 109

Query: 347 DALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDN--IRTLTME 404
            A++ LP     +    L +L +     L+ L    +  +  +L  L+  N  +  +  E
Sbjct: 110 -AIRYLPPHVFQNV-PLLTVLVLERN-DLSSLPR-GIFHNTPKLTTLSMSNNNLERI--E 163

Query: 405 EGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNL----------PP 454
           +    +++       L++L + S   LT +       + + SL   N+          P 
Sbjct: 164 DDTFQATTS------LQNLQLSSN-RLTHV-----DLSLIPSLFHANVSYNLLSTLAIPI 211

Query: 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGN 514
           +++ L       +  +   +  N  L  + + +  N     + L N   L E+ +     
Sbjct: 212 AVEELDASHN-SINVVRGPV--NVELTILKLQH--NNLTDTAWLLNYPGLVEVDLSYN-E 265

Query: 515 LESFPEGGLLCAKLTRLTILDCK--RLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLP 572
           LE          K+ RL  L     RL AL      + +L+ L +     L  +E +   
Sbjct: 266 LEKIMYHPF--VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS-HNHLLHVERNQPQ 322

Query: 573 -TNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI----INCDDDMVSFP 619
              L +L+++ N  I    ++         +L+ LT+     +C+     F 
Sbjct: 323 FDRLENLYLDHN-SI--VTLK----LSTHHTLKNLTLSHNDWDCNSLRALFR 367

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 12/137 (8%)

Query: 425 IESCPSLTRI-FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYI 483
           IE   ++  +  +          +    L  +L+ L + G          L   TSL  +
Sbjct: 62  IEYAHNIKDLTINNIHA-TNYNPIS--GLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 484 NISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCK--RLEA 541
           +IS+  +   + + ++ L ++  I +   G +       L    L  L  L+ +   +  
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PL--KTLPELKSLNIQFDGVHD 173

Query: 542 LPKGLHNLTSLQQLTIG 558
             +G+ +   L QL   
Sbjct: 174 Y-RGIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 27/161 (16%), Positives = 62/161 (38%), Gaps = 18/161 (11%)

Query: 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCG 513
            SL  +++     +  +   ++   +++ + I+N        + +  L  L+ + I    
Sbjct: 44  NSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGK- 98

Query: 514 NLESFPEGGLLCAKLTRLTILD---CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE-D 569
           ++ S     L  + LT LT+LD       +++   ++ L  +  + +   G +  +    
Sbjct: 99  DVTSDKIPNL--SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 570 GLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610
            L   L SL I+ +       +   RG   F  L +L   +
Sbjct: 157 TL-PELKSLNIQFD------GVHDYRGIEDFPKLNQLYAFS 190

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 39/221 (17%), Positives = 84/221 (38%), Gaps = 34/221 (15%)

Query: 454 PSLKSLSVYGCSKLESIAER-LDNNTSLEYINISNCEN-LKILPSGLHNLRQLQEITIQR 511
            +L +L +    K+  I+         LE + +S   N LK LP  +   + LQE+ +  
Sbjct: 76  KNLHTLILINN-KISKISPGAFAPLVKLERLYLSK--NQLKELPEKM--PKTLQELRVHE 130

Query: 512 CGNLESFPEGGLLCAKLTRLTILD----CKRLEALPKG-LHNLTSLQQLTIGKGGELPSL 566
              +    +       L ++ +++      +   +  G    +  L  + I     + ++
Sbjct: 131 N-EITKVRKSVF--NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA-DTNITTI 186

Query: 567 EEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVR 626
              GLP +L  L ++ N +I  + ++        ++L +L +                V 
Sbjct: 187 P-QGLPPSLTELHLDGN-KI--TKVDAA-SLKGLNNLAKLGLSFN---------SISAVD 232

Query: 627 LGTTLPLPASLTSLWISNFPN-LERLSSSIVDLQNLTSLYL 666
            G+    P  L  L ++N  N L ++   + D + +  +YL
Sbjct: 233 NGSLANTP-HLRELHLNN--NKLVKVPGGLADHKYIQVVYL 270

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 24/168 (14%)

Query: 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSG-LHNLRQLQEITIQRC 512
             L  + +     + +I + L    SL  +++     +  + +  L  L  L ++ +   
Sbjct: 171 KKLSYIRIADT-NITTIPQGLP--PSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN 226

Query: 513 GNLESFPEGGLLCAKLTRLTILDCK--RLEALPKGLHNLTSLQQL--------TIGKGGE 562
            ++ +   G L  A    L  L     +L  +P GL +   +Q +         IG    
Sbjct: 227 -SISAVDNGSL--ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 563 LPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610
            P         +   + +  N  +    I+       F  +     + 
Sbjct: 284 CPPGYNTKKA-SYSGVSLFSN-PVQYWEIQPS----TFRCVYVRAAVQ 325

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 74/406 (18%), Positives = 126/406 (31%), Gaps = 54/406 (13%)

Query: 226 RLPKLEELEINDMKEQTYIWKSHNELLQ--DICSLKRLTIDSCPKLQSLVAEEEKDQQQQ 283
           +  KL EL +      + I K+  + L    +  L          L+      E    + 
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF----EPSIMEG 257

Query: 284 LCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQF 343
           LC+++  ++  RL Y             L+++  + +   S +    +V    K + +  
Sbjct: 258 LCDVT--IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSI 314

Query: 344 RECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTM 403
             C  LK  P   +      L+ L++ +         V LP SL  L +           
Sbjct: 315 IRCQ-LKQFPTLDLP----FLKSLTLTMNKGSISFKKVALP-SLSYLDLSRNAL------ 362

Query: 404 EEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYG 463
                  S     ++ L HL +          S N     + S     L   L+ L    
Sbjct: 363 -SFSGCCSYSDLGTNSLRHLDL----------SFNGA--IIMSANFMGLE-ELQHLDFQH 408

Query: 464 CSKLESIAER--LDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEG 521
            S L+ + E     +   L Y++IS              L  L  + +      ++    
Sbjct: 409 -STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 522 GLLCAKLTRLTILDCK--RLEALPKG-LHNLTSLQQLTIGKGGELPSLEEDGLP--TNLH 576
               A  T LT LD    +LE +  G    L  LQ L +     L  L+        +L 
Sbjct: 468 VF--ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS-HNNLLFLDSSHYNQLYSLS 524

Query: 577 SLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI----INCDDDMVSF 618
           +L    N  I     +     H   SL    +    + C  +   F
Sbjct: 525 TLDCSFN-RI--ETSKGI-LQHFPKSLAFFNLTNNSVACICEHQKF 566

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 70/431 (16%), Positives = 132/431 (30%), Gaps = 72/431 (16%)

Query: 291 LEYLRLRYCKGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVALP--SKLKKIQFRECD 347
            + + L +   L  L   S S  S L+ +++ +C  + +  + A      L  +      
Sbjct: 34  TKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP 91

Query: 348 ALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDN--IRTLTMEE 405
            ++       S   +SLE L       L  L    +   L  L  LN  +  I +  +  
Sbjct: 92  -IQSFSPGSFSG-LTSLENLVAVETK-LASLESFPI-GQLITLKKLNVAHNFIHSCKLPA 147

Query: 406 GIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCS 465
              + ++       L H+ +     +  I         L+ L     P    SL +    
Sbjct: 148 YFSNLTN-------LVHVDLSYN-YIQTI-----TVNDLQFLR--ENPQVNLSLDMSLN- 191

Query: 466 KLESIAERLDNNTSLEYINIS-NCENLKILPSGLHNLRQLQEITIQRCG-----NLESFP 519
            ++ I ++      L  + +  N  +  I+ + L NL  L    +         NLE F 
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 520 EGGLLCAKLTRLTILDCKRLEAL---PKGLHNLTSLQQL--------TIGKGGELPSLEE 568
              +       +                  H L ++  +         +    +    + 
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS 311

Query: 569 --------DGLP----TNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMV 616
                      P      L SL +  N         +G    +  +L  L+ ++   + +
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSLTLTMN---------KGSISFKKVALPSLSYLDLSRNAL 362

Query: 617 SFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFP 676
           SF        LGT      SL  L +S       +S++ + L+ L  L       L+   
Sbjct: 363 SFSGCCSYSDLGTN-----SLRHLDLSF-NGAIIMSANFMGLEELQHLDFQHS-TLKRVT 415

Query: 677 EKGLPSSLLQL 687
           E     SL +L
Sbjct: 416 EFSAFLSLEKL 426

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 39/313 (12%), Positives = 85/313 (27%), Gaps = 63/313 (20%)

Query: 430 SLTRIFSKNELPATLESLEVGN-----LPPS-------LKSLSVYGCSKLESIAERLDNN 477
            L+++    ++P++ +++++       L          L+ L +  C       +     
Sbjct: 22  KLSKVPD--DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL 79

Query: 478 TSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCK 537
             L  + ++        P     L  L+ +       L S     +   +L  L  L+  
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPI--GQLITLKKLN-- 134

Query: 538 RLE-------ALPKGLHNLTSLQQLTIGK---------------------------GGEL 563
            +         LP    NLT+L  + +                                +
Sbjct: 135 -VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

Query: 564 PSLEEDGL-PTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEP 622
             +++       LH L +  N      M           +L  L +              
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKT------CLQNLAGLHVHRLILGEFKDERNL 247

Query: 623 EDVRLGTTLPLPA-SLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLP 681
           E         L   ++    ++   +          L N++++ L     ++Y  +    
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKH 306

Query: 682 SSLLQLHIYRCPL 694
                L I RC L
Sbjct: 307 FKWQSLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 59/281 (20%), Positives = 106/281 (37%), Gaps = 29/281 (10%)

Query: 425 IESCPSLTRIF-SKNELPATLESLEVGNLPPSLKSLSVYGCSKLESI--AERLDNNTSLE 481
                SL  +   + +L A+LES  +G L  +LK L+V     + S        N T+L 
Sbjct: 100 FSGLTSLENLVAVETKL-ASLESFPIGQLI-TLKKLNVAHN-FIHSCKLPAYFSNLTNLV 156

Query: 482 YINISNCENLKILPSGLHNLRQLQEITIQ---RCGNLESFPEGGLLCAKLTRLTILDCKR 538
           ++++S      I  + L  LR+  ++ +        ++   +      KL  LT+     
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216

Query: 539 LEALPKG-LHNLTSLQ--QLTIGKGGELPSLE--EDGLPTNLHSLWIEDNMEIWKSMIER 593
              + K  L NL  L   +L +G+  +  +LE  E  +   L  + I++    + +    
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 594 GRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS 653
                +F  L  ++ ++     + +  +        +L    S+    +  FP L     
Sbjct: 277 DIV--KFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSL----SIIRCQLKQFPTL----- 325

Query: 654 SIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPL 694
              DL  L SL L        F +  LP SL  L + R  L
Sbjct: 326 ---DLPFLKSLTLTMNKGSISFKKVALP-SLSYLDLSRNAL 362

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 16/186 (8%)

Query: 429 PSLTRI-FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAER-LDNNTSLEYINIS 486
             L +I  S+N++   +E+    NLP  L  + +   + L  I      N  +L+Y+ IS
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 487 NCENLKILPSGLH-NLRQLQEITIQRCGNLESFPEGGL--LCAKLTRLTILDCKRLEALP 543
           N   +K LP     +  Q   + IQ   N+ +        L  +   L  L+   ++ + 
Sbjct: 113 NT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW-LNKNGIQEIH 170

Query: 544 KGLHNLTSLQQLTIGKGGELPSLEED---GLPTNLHSLWIEDNMEIWKSMIERGRGFHRF 600
               N T L +L +     L  L  D   G  +    L I          +    G    
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRI---HSLPSY-GLENL 225

Query: 601 SSLRRL 606
             LR  
Sbjct: 226 KKLRAR 231

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 11/193 (5%)

Query: 371 VCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPS 430
           VC     LA  +       L   N     T  +      +     +          S   
Sbjct: 35  VCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR 94

Query: 431 LTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCEN 490
           +  +   N +        + +    L++LS+ G    + I   L  N++L  +N+S C  
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 491 L--KILPSGLHNLRQLQEITIQRCGNLESFPEGGLL---CAKLTRLTILDCKR------L 539
                L + L +  +L E+ +  C +         +      +T+L +   ++      L
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 540 EALPKGLHNLTSL 552
             L +   NL  L
Sbjct: 215 STLVRRCPNLVHL 227

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 45/303 (14%)

Query: 267 PKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSS-LSLSSLREIEIYKCSS 325
             L   +    K+    +         +  R  +  +  P +   S   ++ +++     
Sbjct: 46  ESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 105

Query: 326 LVSFPEVALPS--KLKKIQFREC----DALKLLPEAWMSDTNSSLEILSIWVCHSLTYLA 379
            VS     L    KL+ +           +  L +      NS+L  L++  C   +  A
Sbjct: 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK------NSNLVRLNLSGCSGFSEFA 159

Query: 380 GVQLPRSLKRLVILN---CDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFS 436
              L  S  RL  LN   C +     ++  +   S        +  L++       +   
Sbjct: 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET------ITQLNLSGY---RKNLQ 210

Query: 437 KNELPATLESLEVGNLPPSLKSLSVYGCSKLESIA-ERLDNNTSLEYINISNCENLKILP 495
           K++L   +         P+L  L +     L++   +       L+++++S C ++   P
Sbjct: 211 KSDLSTLVRRC------PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII--P 262

Query: 496 SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQL 555
             L  L +           L++    G++     +L       L+       + T++ + 
Sbjct: 263 ETLLELGE--------IPTLKTLQVFGIVPDGTLQLLKEALPHLQI---NCSHFTTIARP 311

Query: 556 TIG 558
           TIG
Sbjct: 312 TIG 314

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 48/290 (16%), Positives = 104/290 (35%), Gaps = 42/290 (14%)

Query: 395 CDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPP 454
             N++   +   +      +      E + + +   +T  F  + +   L +  + +   
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVT--FKNSTM-RKLPAALLDSFR- 69

Query: 455 SLKSLSVYGCSKLESIAER-LDNNTSLEYINISNCENLKILPSG-LHNLRQLQEITIQRC 512
            ++ L++    ++E I         +++ + +     ++ LP     N+  L  + ++R 
Sbjct: 70  QVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN 127

Query: 513 GNLESFPEGGLLCAKLTRLTILDCK--RLEALPKG-LHNLTSLQQLTIGKGGELPSLEED 569
            +L S P G  +     +LT L      LE +        TSLQ L +     L  ++  
Sbjct: 128 -DLSSLPRG--IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS-SNRLTHVDLS 183

Query: 570 GLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGT 629
            +P +L    +  N+                +    +  ++   + ++    P +V L T
Sbjct: 184 LIP-SLFHANVSYNL------------LSTLAIPIAVEELDASHNSINVVRGPVNVEL-T 229

Query: 630 TLPLPA-SLTSL-WISNFPNLERLS-----------SSIVDLQNLTSLYL 666
            L L   +LT   W+ N+P L  +               V +Q L  LY+
Sbjct: 230 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 55/327 (16%), Positives = 111/327 (33%), Gaps = 56/327 (17%)

Query: 290 RLEYLRLRYCKGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVALP--SKLKKIQFREC 346
             + +  +    + KLP + L     +  + +     +      A      ++K+     
Sbjct: 46  NQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN 103

Query: 347 DALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDN--IRTLTME 404
            A++ LP     +    L +L +     L+ L    +  +  +L  L+  N  +  +   
Sbjct: 104 -AIRYLPPHVFQNV-PLLTVLVLERND-LSSLPR-GIFHNTPKLTTLSMSNNNLERI--- 156

Query: 405 EGIQSSSSRRYTSSL---------LEHLHIESCPSLTRI-FSKNEL-----PATLESLEV 449
                  + + T+SL         L H+ +   PSL     S N L     P  +E L+ 
Sbjct: 157 ----EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDA 212

Query: 450 GN-----LPP----SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSG-LH 499
            +     +       L  L +     L   A  L N   L  +++S  E L+ +      
Sbjct: 213 SHNSINVVRGPVNVELTILKLQHN-NLTDTAW-LLNYPGLVEVDLSYNE-LEKIMYHPFV 269

Query: 500 NLRQLQEITIQRCGN-LESFPEGGLLCAKLTRLTILDCK--RLEALPKGLHNLTSLQQLT 556
            +++L+ + I    N L +    G     +  L +LD     L  + +       L+ L 
Sbjct: 270 KMQRLERLYIS--NNRLVALNLYG---QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324

Query: 557 IGKGGELPSLEEDGLPTNLHSLWIEDN 583
           +     + +L+       L +L +  N
Sbjct: 325 LD-HNSIVTLKLSTHH-TLKNLTLSHN 349

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 29/211 (13%), Positives = 63/211 (29%), Gaps = 33/211 (15%)

Query: 429 PSLTRIF-SKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAER-LDNNTSLEYINIS 486
            SLT +    N    TL    + +    L+ L V        I  +     T LE + I 
Sbjct: 124 SSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 487 NCENLKILPSG-LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKG 545
              +L+      L +++ +  + +          E  +     + +  L+   L      
Sbjct: 183 AS-DLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFV--DVTSSVECLE---LRDTDLD 235

Query: 546 LHNLTSLQQLTIGKGGELPSLEEDGL--------------PTNLHSLWIEDNMEIWKSMI 591
             + + L         +  +     +               + L  L    N  +    +
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-L--KSV 292

Query: 592 ERGRGFHRFSSLRRLTI----INCDDDMVSF 618
             G  F R +SL+++ +     +C    + +
Sbjct: 293 PDGI-FDRLTSLQKIWLHTNPWDCSCPRIDY 322

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 70/470 (14%), Positives = 152/470 (32%), Gaps = 92/470 (19%)

Query: 227 LPKLEELEINDMKEQTYIWKSHNEL--------LQDICSLKRLTIDSCPKLQSLVAEEEK 278
           L  L+EL +           +HN +          ++ +L+ L + S  K+QS+   +  
Sbjct: 123 LKTLKELNV-----------AHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTD-- 168

Query: 279 DQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPS-- 336
              + L ++      L L     +  +   +     L ++ +      ++  +  +    
Sbjct: 169 --LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 337 -----KLKKIQFRECDALKLLPEAWMSD-TNSSLEILSIWVCHSLTYLAGVQLPRSLKRL 390
                +L   +FR    L+   ++ +    N ++E   +           + L   L  +
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL-AYLDYYLDDIIDLFNCLTNV 284

Query: 391 VILNCDNIRTLTMEEGIQSSSSRR-YTSSL----LEHLHIESCPSLTRIFSKNELPATLE 445
              +  ++    +++   +   +     +        L ++S   LT   +K     +  
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 446 SLEVGNLPPSLKSLSVYG--CSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQ 503
            L      PSL+ L +     S     ++     TSL+Y+++S    +  + S    L Q
Sbjct: 345 DL------PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQ 397

Query: 504 LQEITIQRCGNLESFPEGGLLCAKLTRLTILDCK--RLEALPKG-LHNLTSLQQLTI--- 557
           L+ +  Q   NL+   E  +    L  L  LD           G  + L+SL+ L +   
Sbjct: 398 LEHLDFQHS-NLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 558 --------GKGGELPSLEE--------DGLP-------TNLHSLWIEDNMEIWKSMIERG 594
                       EL +L          + L        ++L  L +  N           
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN------F-FS 508

Query: 595 RGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISN 644
                +  L  L +++   + +    +            P+SL  L ++ 
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKK------QELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 44/246 (17%), Positives = 83/246 (33%), Gaps = 28/246 (11%)

Query: 451 NLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQ 510
           NLP S K+L +         +    +   L+ +++S CE   I      +L  L  + + 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 511 RCGNLESFPEGGLLCAKLTRLTILD---CKRLEALPKGLHNLTSLQQLTIG----KGGEL 563
               ++S   G    + L+ L  L              + +L +L++L +     +  +L
Sbjct: 85  GN-PIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 564 PSLEEDGLPTNLHSLWIEDN--MEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPE 621
           P        TNL  L +  N    I+ +             L ++ ++N   D+   P  
Sbjct: 142 PE--YFSNLTNLEHLDLSSNKIQSIYCTD---------LRVLHQMPLLNLSLDLSLNPMN 190

Query: 622 PEDVRLGTTLPLPASLTSLWIS-NFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGL 680
                    +     L  L +  NF +L  + + I  L  L    L+          +  
Sbjct: 191 FIQPGAFKEI----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 681 PSSLLQ 686
             S L+
Sbjct: 247 DKSALE 252

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 73/475 (15%), Positives = 145/475 (30%), Gaps = 81/475 (17%)

Query: 226 RLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLC 285
             P+L+ L+++       I    +   Q +  L  L +     +QSL             
Sbjct: 50  SFPELQVLDLSR----CEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGA-------FS 97

Query: 286 ELSCRLEYLRLRYCKGLVKLPQSSLS-LSSLREIEIYKC--SSLVSFPEVALPSKLKKIQ 342
            LS  L+ L       L  L    +  L +L+E+ +      S       +  + L+ + 
Sbjct: 98  GLS-SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 343 FRECDALKLLPEAWMSDTNSSLEILSIWVCH--------------SLTYL-------AGV 381
                   +            L  LS+ +                 L  L       +  
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN 215

Query: 382 QLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELP 441
            +   ++ L  L    +               +     L +L IE        +  +++ 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 442 ATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNL 501
                L       ++ S S+   + +E + +    N   +++ + NC+  +     L +L
Sbjct: 276 DLFNCL------TNVSSFSLVSVT-IERV-KDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 502 RQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD-----CKRLEALPKGLHNLTSLQQLT 556
           ++L   + +  GN  S          L  L  LD             +     TSL+ L 
Sbjct: 328 KRLTFTSNKG-GNAFSE-------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 557 IGKGGELPSLEED--GLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDD- 613
           +     + ++  +  GL   L  L  + +       +++   F  F SLR L  ++    
Sbjct: 380 LS-FNGVITMSSNFLGLE-QLEHLDFQHS------NLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 614 DMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLER--LSSSIVDLQNLTSLYL 666
                                +SL  L ++   + +   L     +L+NLT L L
Sbjct: 432 HTRVAFNG--------IFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDL 477

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 47/242 (19%)

Query: 451 NLPPSLKSLSVYGCSKLESI-AERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITI 509
            + P    L +     +  +  +       L  + + N +  KI       LR+LQ++ I
Sbjct: 51  EISPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 510 QRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKG-LHNLTSLQQLTIG----KGGELP 564
            +  +L   P      + L  L  +   R+  +PKG    L ++  + +G    +     
Sbjct: 110 SKN-HLVEIPPNLP--SSLVELR-IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 565 -------SLEE------------DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRR 605
                   L                LP  L+ L ++ N +I    IE      R+S L R
Sbjct: 166 PGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN-KI--QAIELED-LLRYSKLYR 221

Query: 606 LTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPN-LERLSSSIVDLQNLTSL 664
           L + +          +   +  G+   LP +L  L + N  N L R+ + + DL+ L  +
Sbjct: 222 LGLGHN---------QIRMIENGSLSFLP-TLRELHLDN--NKLSRVPAGLPDLKLLQVV 269

Query: 665 YL 666
           YL
Sbjct: 270 YL 271

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 56/235 (23%)

Query: 420 LEHLHIESCPSLTRIFSKNELPATLESLEVGN-----LPP-------SLKSLSVYG-CSK 466
           L+ L+I     L  I     LP++L  L + +     +P        ++  + + G   +
Sbjct: 104 LQKLYISKN-HLVEI--PPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 467 LESIAERLDNNTSLEYINISNCENLKILPSGL----------------------HNLRQL 504
                    +   L Y+ IS    L  +P  L                          +L
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEA-KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 505 QEITIQRCGNLESFPEGGLLCAKLTRLTILDCK--RLEALPKGLHNLTSLQQLTIGK--- 559
             + +     +     G L  + L  L  L     +L  +P GL +L  LQ + +     
Sbjct: 220 YRLGLGHN-QIRMIENGSL--SFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI 276

Query: 560 ----GGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610
                 +   +         + + + +N  +    ++       F  +     I 
Sbjct: 277 TKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPA----TFRCVTDRLAIQ 326

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 6e-07
 Identities = 52/231 (22%), Positives = 90/231 (38%), Gaps = 39/231 (16%)

Query: 383 LPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPA 442
           +P + + L  L  +NI+       IQ+ + R      LE L +    S+ +I        
Sbjct: 73  IPSNTRYL-NLMENNIQM------IQADTFRHLHH--LEVLQLGRN-SIRQI-----EVG 117

Query: 443 TLESLEVGNLPPSLKSLSVYGCSKLESIAER-LDNNTSLEYINISNCENLKILPSG-LHN 500
               L       SL +L ++    L  I     +  + L  + + N   ++ +PS   + 
Sbjct: 118 AFNGL------ASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNR 169

Query: 501 LRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCK--RLEALPKGLHNLTSLQQLTIG 558
           +  L  + +     LE   EG      L  L  L+     ++ +P  L  L  L++L + 
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAF--EGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMS 226

Query: 559 KGGELPSLEED---GLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRL 606
            G   P +      GL  +L  LW+  N ++  S+IER   F   +SL  L
Sbjct: 227 -GNHFPEIRPGSFHGLS-SLKKLWV-MNSQV--SLIERN-AFDGLASLVEL 271

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 35/177 (19%)

Query: 530 RLTILDC--KRLEALPKGL-HNLTSLQ----QLTIGKGGELPSLEEDGLPTNLHSLWIED 582
           + + + C  + L  +P+G+  N   L      + + +      L       +L  L +  
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHL------HHLEVLQLGR 108

Query: 583 NMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWI 642
           N  I    IE G  F+  +SL  L + +    +   P        G    L   L  LW+
Sbjct: 109 N-SI--RQIEVG-AFNGLASLNTLELFDNW--LTVIPS-------GAFEYLS-KLRELWL 154

Query: 643 SNFPN-LERLSSSI-VDLQNLTSLYLLDCPKLRYFPE---KGLPSSLLQLHIYRCPL 694
            N  N +E + S     + +L  L L +  KL Y  E   +GL  +L  L++  C +
Sbjct: 155 RN--NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNI 208

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 11/117 (9%)

Query: 444 LESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGL-HNLR 502
           L  L+V    P L +L +    +L+S+        +L  +++S    L  LP G    L 
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLG 124

Query: 503 QLQEITIQRCGN-LESFPEGGLLCAKLTRLTILD--CKRLEALPKGL-HNLTSLQQL 555
           +LQE+ ++  GN L++ P G  L     +L  L      L  LP GL + L +L  L
Sbjct: 125 ELQELYLK--GNELKTLPPG--LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 36/199 (18%), Positives = 67/199 (33%), Gaps = 29/199 (14%)

Query: 478 TSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDC- 536
                +++S         + L    +L ++ + R   L            L  L  LD  
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD----GTLPVLGTLDLS 85

Query: 537 -KRLEALPKGLHNLTSLQQLTIGKGGELPSLEE---DGLPTNLHSLWIEDNMEIWKSMIE 592
             +L++LP     L +L  L +     L SL      GL   L  L+++ N E+    + 
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGL-GELQELYLKGN-EL--KTLP 140

Query: 593 RGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPN-LERL 651
            G      +   +L  ++  ++ ++  P       G    L  +L +L +    N L  +
Sbjct: 141 PG----LLTPTPKLEKLSLANNNLTELPA------GLLNGLE-NLDTLLLQE--NSLYTI 187

Query: 652 SSSIVDLQNLTSLYLLDCP 670
                    L   +L   P
Sbjct: 188 PKGFFGSHLLPFAFLHGNP 206

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 37/230 (16%)

Query: 383 LPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPA 442
           +  + + L  L+ + I+       I+ +S +      LE L +     +  I        
Sbjct: 62  ISTNTRLLN-LHENQIQI------IKVNSFKHLRH--LEILQLSRN-HIRTI-----EIG 106

Query: 443 TLESLEVGNLPPSLKSLSVYGCSKLESIAER-LDNNTSLEYINISNCENLKILPSGL-HN 500
               L       +L +L ++   +L +I        + L+ + + N   ++ +PS   + 
Sbjct: 107 AFNGL------ANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNR 158

Query: 501 LRQLQEITIQRCGNLESFPEGGLLCAKLTRLT--ILDCKRLEALPKGLHNLTSLQQLTIG 558
           +  L+ + +     L    EG      L+ L    L    L  +P  L  L  L +L + 
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAF--EGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLS 215

Query: 559 KGGELPSLEEDGLP--TNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRL 606
            G  L ++         +L  LW+    +I   +IER   F    SL  +
Sbjct: 216 -GNHLSAIRPGSFQGLMHLQKLWM-IQSQI--QVIERN-AFDNLQSLVEI 260

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 33/288 (11%), Positives = 80/288 (27%), Gaps = 52/288 (18%)

Query: 469 SIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKL 528
           +I E   N    +   +++    + L S   +   ++E+ +     L       L  A  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADL--APF 57

Query: 529 TRLTILDCK--RLEALPKGLHNLTSLQQL--------TIGKGGELPSLE---------ED 569
           T+L +L+     L      L +L++L+ L         +  G  + +L            
Sbjct: 58  TKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC 116

Query: 570 GLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDD-DMVSFPPEPEDVRLG 628
                  ++++ +N +I  +M+             R+  ++    ++ +           
Sbjct: 117 SRGQGKKNIYLANN-KI--TMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 629 ------------TTLPLPASLTSLWI----SNFPNLERLSSSIVDLQNLTSLYLLDCPKL 672
                         +        L      SN   L  +         +T + L +  KL
Sbjct: 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNN-KL 226

Query: 673 RYFPEK-GLPSSLLQLHIYRCPLIEEKCRKDGGQYWDLLTHIPYARIA 719
               +      +L    +           +D       +  +    + 
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 36/287 (12%), Positives = 92/287 (32%), Gaps = 31/287 (10%)

Query: 420 LEHLHIESCPSLTRIF-SKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAER--LDN 476
           +  +          I+ + N++   L  L+ G     ++ L +   ++++++       +
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKI-TMLRDLDEGCRS-RVQYLDLKL-NEIDTVNFAELAAS 167

Query: 477 NTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDC 536
           + +LE++N+     +  +   +    +L+ + +     L          A +T +++ + 
Sbjct: 168 SDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN 224

Query: 537 KRLEALPKGLHNLTSLQQLTIG----KGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIE 592
           K L  + K L    +L+   +       G L           + ++  +   ++      
Sbjct: 225 K-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKL------ 275

Query: 593 RGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS 652
                         T+ +         P P   RL        +L S   S     ERL 
Sbjct: 276 ---TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS---ETERLE 329

Query: 653 SSIVDLQNLTSLYLLDCPKLRYFPEK--GLPSSLLQLHIYRCPLIEE 697
               +      +  L   + R   ++      + + L   +  L E+
Sbjct: 330 CERENQARQREIDALKE-QYRTVIDQVTLRKQAKITLEQKKKALDEQ 375

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 67/455 (14%), Positives = 140/455 (30%), Gaps = 59/455 (12%)

Query: 242 TYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSC-------RLEYL 294
             +  S N     I  L+   I    +L+ L          ++  L          LEYL
Sbjct: 55  KALSLSQNS----ISELRMPDISFLSELRVLRL-----SHNRIRSLDFHVFLFNQDLEYL 105

Query: 295 RLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLK----------KIQFR 344
            + + + L  +    ++  SLR +++   +     P       L           K +  
Sbjct: 106 DVSHNR-LQNISCCPMA--SLRHLDLS-FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161

Query: 345 ECDALKLLPEAWMSDTNSSLEI----LSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRT 400
           +   +  L  + +     S  I           + T L  V  P SL  + +    ++  
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV--NMSVNA 219

Query: 401 LTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLE---VGNLPPSLK 457
           L   +      +      L+  L   +        +   +  T +          P  ++
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 458 SLSVYGCSKLESIAERL--DNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCG-- 513
            L++Y  +  E I       + T+L+ + I + +N   L S         E+ I+     
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 514 NLESFPEG-GLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEED-GL 571
           +            +  T L        +++ +G   L  LQ L + +   L +  +   +
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL-QRNGLKNFFKVALM 398

Query: 572 PTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTL 631
             N+ SL   D      + +         +    + ++N   +M++              
Sbjct: 399 TKNMSSLETLDVS---LNSLNSHAYDRTCAWAESILVLNLSSNMLT---------GSVFR 446

Query: 632 PLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYL 666
            LP  +  L + N   +  +   +  LQ L  L +
Sbjct: 447 CLPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNV 480

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 54/302 (17%), Positives = 108/302 (35%), Gaps = 41/302 (13%)

Query: 308 SSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECD-----ALKLLPEAWMSDTNS 362
             L LS+++  +      +    E+     L  +  +  +     ++KL    W      
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV-E 279

Query: 363 SLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEH 422
            L I ++ +   +          +LK L+I +  N   L  +E + S     +    ++ 
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV----FAEMNIKM 335

Query: 423 LHIESCPSLTRIFSKNELPATLESLEVGN-----LPP----SLKSLSVYGCSK-----LE 468
           L I   P +  +   +  P++   L                +LK L      +       
Sbjct: 336 LSISDTPFIHMVCPPS--PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393

Query: 469 SIAERLDNNTSLEYINISNCENLKILPSGLHN-----LRQLQEITIQRCGNLESFPEGGL 523
            +A    N +SLE +++S    L  L S  ++        +  + +       S      
Sbjct: 394 KVALMTKNMSSLETLDVS----LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-- 447

Query: 524 LCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIG--KGGELPSLEEDGLPTNLHSLWIE 581
           L  K+  L  L   R+ ++PK + +L +LQ+L +   +   +P    D L  +L  +W+ 
Sbjct: 448 LPPKVKVLD-LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT-SLQYIWLH 505

Query: 582 DN 583
           DN
Sbjct: 506 DN 507

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 46/240 (19%), Positives = 83/240 (34%), Gaps = 33/240 (13%)

Query: 451 NLPPSLKSLSVYGCSKLESIAER-LDNNTSLEYINISNCENLKILPSG-LHNLRQLQEIT 508
            +P + + + ++G +++  +         +L  + + +   L  + +     L  L+++ 
Sbjct: 29  GIPAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLD 86

Query: 509 IQRCGNLESFPEGGLLCAKLTRLTILDCK--RLEALPKG-LHNLTSLQQLTIGKGGELPS 565
           +     L S          L RL  L      L+ L  G    L +LQ L +     L +
Sbjct: 87  LSDNAQLRSVDPATF--HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ-DNALQA 143

Query: 566 LEEDGLP--TNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPE 623
           L +D      NL  L++  N  I  S +     F    SL RL +      +    P   
Sbjct: 144 LPDDTFRDLGNLTHLFLHGN-RI--SSVPER-AFRGLHSLDRLLLHQN--RVAHVHP--- 194

Query: 624 DVRLGTTLPLPASLTSLWISNFPNLERLSSSIVD-LQNLTSLYL----LDC-PKLRYFPE 677
                    L   L +L++    NL  L +  +  L+ L  L L      C  + R    
Sbjct: 195 ----HAFRDLG-RLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 24/130 (18%)

Query: 439 ELPATLESLEVGN--------LPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCEN 490
           ELPA+L+ L+V N        LP  L+ ++     +L  + E     TSLE +++ N   
Sbjct: 117 ELPASLKHLDVDNNQLTMLPELPALLEYINADNN-QLTMLPELP---TSLEVLSVRNN-Q 171

Query: 491 LKILPSGLHNLRQLQEITIQRCGN--LESFPEG-GLLCAKLTRLTILDCK--RLEALPKG 545
           L  LP    +L  L            LES P                 C+  R+  +P+ 
Sbjct: 172 LTFLPELPESLEAL------DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPEN 225

Query: 546 LHNLTSLQQL 555
           + +L     +
Sbjct: 226 ILSLDPTCTI 235

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 34/239 (14%), Positives = 70/239 (29%), Gaps = 62/239 (25%)

Query: 298 YCKGLVKLPQSSLSL-SSLREIEIY---KCSSLVSFPEVALPSKLKKIQ---FRECDALK 350
           Y  G   +  ++     +   +         +L     V L  K+K I+   F+ CD LK
Sbjct: 71  YPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEK---VILSEKIKNIEDAAFKGCDNLK 127

Query: 351 --LLPEAWMSDTNSSLEILSIWVCHSLTY-------LAGVQLPRSLKRLVILNCDNIRTL 401
              + +       ++  +L   +  S+T            +     +    +  + + T 
Sbjct: 128 ICQIRK------KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT 181

Query: 402 TMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLE------VGNLPPS 455
                +            LE   +++      I            L+      + +  P+
Sbjct: 182 IQVGAMGK----------LEDEIMKAGLQPRDI----NFLTIEGKLDNADFKLIRDYMPN 227

Query: 456 LKSLSVYGCSKLESIAERL-DNNTSLEYINI------------SNCENLK---ILPSGL 498
           L SL +   +   +I +        L  I +            SNC  L     LP+ +
Sbjct: 228 LVSLDI-SKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASV 285

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 33/245 (13%), Positives = 64/245 (26%), Gaps = 63/245 (25%)

Query: 297 RYCKGL--VKLPQSSLSLSSLREIEI---YKCSSLVSFPEVALPSKLKKI--QFRECDAL 349
           +  + L  V L         ++ IE      C +L       +  K           D++
Sbjct: 98  KGKQTLEKVILS------EKIKNIEDAAFKGCDNLKI---CQIRKKTAPNLLPEALADSV 148

Query: 350 KL----LPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRL---VILNCDNIRTLT 402
                 L  +      +  E  +      L          ++ +L   ++      R + 
Sbjct: 149 TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE---TTIQVGAMGKLEDEIMKAGLQPRDIN 205

Query: 403 MEEGIQSSSSRRYTSSL-----LEHLHI-------------ESCPSLTRIFSKNELPATL 444
                    +  +         L  L I                  L +I    +LP  L
Sbjct: 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI----KLPHNL 261

Query: 445 ESLEVG------------NLPPSLKSLSVY---GCSKLESIAERLDNNTSLEYINISNCE 489
           +++                LP S+ ++      GC  L  +    D  T+L      N  
Sbjct: 262 KTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV 321

Query: 490 NLKIL 494
             K++
Sbjct: 322 PSKLI 326

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 25/205 (12%), Positives = 65/205 (31%), Gaps = 27/205 (13%)

Query: 451 NLPPSLKSLSVYGCSKLESIAER--LDNNTSLEYINISNCENLKILPSG-LHNLRQLQEI 507
           +LP     L +     L  +         T+L  + +S+  +L  + S     +  L+ +
Sbjct: 36  SLPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYL 93

Query: 508 TIQRCGNLESFPEGGLLCAKLTRLTILD--CKRLEALPKG-LHNLTSLQQLTIGKGGELP 564
            +    +L +  E     + L  L +L      +  + +    ++  LQ+L +    ++ 
Sbjct: 94  DLSSN-HLHTLDEFLF--SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS-QNQIS 149

Query: 565 SLEEDGLP-----TNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI------INCDD 613
               + +        L  L +  N       +       +  +  +  +      + CD 
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNK---LKKLPLT-DLQKLPAWVKNGLYLHNNPLECDC 205

Query: 614 DMVSFPPEPEDVRLGTTLPLPASLT 638
            +       +  +L + +     L 
Sbjct: 206 KLYQLFSHWQYRQLSSVMDFQEDLY 230

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 42/254 (16%), Positives = 82/254 (32%), Gaps = 75/254 (29%)

Query: 425 IESCPSLTRI-FSKNEL--PATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLE 481
            ++     +    K  +    T   L       S+  +       ++S+ + +    ++ 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQNEL------NSIDQIIANNS-DIKSV-QGIQYLPNVT 68

Query: 482 YINISNCENLKILPSGLHNLRQLQEITIQRCG--NLESFPEGGLLCAKLTRLTILDCK-- 537
            + ++  +   I    L NL+ L  + +      +L S          L +L  L  +  
Sbjct: 69  KLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSSL-------KDLKKLKSLSLEHN 119

Query: 538 RLEALPKGLHNLTSLQQLTIGKGG--ELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGR 595
            +  +  GL +L  L+ L +G     ++  L    L T L +L +EDN +I         
Sbjct: 120 GISDIN-GLVHLPQLESLYLGNNKITDITVLS--RL-TKLDTLSLEDN-QI--------- 165

Query: 596 GFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSI 655
                  L  LT                             L +L++S   N     S +
Sbjct: 166 --SDIVPLAGLT----------------------------KLQNLYLSK--NH---ISDL 190

Query: 656 VDLQNLTSLYLLDC 669
             L  L +L +L+ 
Sbjct: 191 RALAGLKNLDVLEL 204

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 9e-04
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 23/175 (13%)

Query: 425 IESCPSLTRI-FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYI 483
           ++    L  +    N + + +  L   +LP  L+SL +    K+  I   L   T L+ +
Sbjct: 105 LKDLKKLKSLSLEHNGI-SDINGLV--HLP-QLESLYLGNN-KITDI-TVLSRLTKLDTL 158

Query: 484 NISNCENLKILPSGLHNLRQLQEITIQRCG--NLESFPEGGLLCAKLTRLTILDC---KR 538
           ++ + +   I    L  L +LQ + + +    +L +        A L  L +L+    + 
Sbjct: 159 SLEDNQISDI--VPLAGLTKLQNLYLSKNHISDLRAL-------AGLKNLDVLELFSQEC 209

Query: 539 LEALPKGLHNLTSLQQLT--IGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMI 591
           L        NL     +    G       + +DG     +  W         S I
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 44/277 (15%), Positives = 86/277 (31%), Gaps = 57/277 (20%)

Query: 424 HIESCPSLTRI-FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAER--LDNNTSL 480
            + S   L  +  S + +  ++          SL SL +   S    +     L + + L
Sbjct: 72  SLLSLTGLESLFLSNSHINGSVSGF--KCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGL 128

Query: 481 EYINISNCE-NLKILPSGLHNLRQLQEITIQRCGNLE-SFPEGGLLCAKLTRLTILDCK- 537
           +++N+S+   +     SG   L  L+ + +    ++  +   G +L      L  L    
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISG 187

Query: 538 -RLE-ALPKGLHNLTSLQQLTIGK---GGELPSLEEDGLPTNLHSLWIEDNM---EIWKS 589
            ++   +        +L+ L +        +P L   G  + L  L I  N    +  ++
Sbjct: 188 NKISGDVDVS--RCVNLEFLDVSSNNFSTGIPFL---GDCSALQHLDISGNKLSGDFSRA 242

Query: 590 MIERGRGFHRFSSLRRLTIINCDDDMVS--FPPEP----EDVRLGTTL---PLPASLTSL 640
                      S+   L ++N   +      PP P    + + L        +P  L+  
Sbjct: 243 ----------ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLS-- 290

Query: 641 WISNFPNLERLS-----------SSIVDLQNLTSLYL 666
                  L  L                    L SL L
Sbjct: 291 --GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 27/166 (16%)

Query: 425 IESCPSLTRI-FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYI 483
            +    +       + +    +SL       +LK L +    ++  +   L + T LE +
Sbjct: 37  QKELSGVQNFNGDNSNI----QSLAGMQFFTNLKELHLSHN-QISDL-SPLKDLTKLEEL 90

Query: 484 NISNCENLKILPSGLHNLRQL----QEITIQRCGNLESFPEGGLLCAKLTRLTILDCK-- 537
           +++      +       L +L     E+      + +S          L  L IL  +  
Sbjct: 91  SVNRNRLKNLNGIPSACLSRLFLDNNELR-----DTDSL-------IHLKNLEILSIRNN 138

Query: 538 RLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDN 583
           +L+++   L  L+ L+ L +  G E+ +         ++ + +   
Sbjct: 139 KLKSIV-MLGFLSKLEVLDLH-GNEITNTGGLTRLKKVNWIDLTGQ 182

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 48/255 (18%), Positives = 98/255 (38%), Gaps = 50/255 (19%)

Query: 425 IESCPSLTRI-FSKNEL--PATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLE 481
             +  +  +I   K+ +    T   L        + +LS +G   + +I E +    +L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADL------DGITTLSAFGT-GVTTI-EGVQYLNNLI 66

Query: 482 YINISNCENLKILPSGLHNLRQLQEITIQRCG--NLESFPEGGLLCAKLTRLTILDCK-- 537
            + + + +   +  + L NL ++ E+ +      N+ +        A L  +  LD    
Sbjct: 67  GLELKDNQITDL--APLKNLTKITELELSGNPLKNVSAI-------AGLQSIKTLDLTST 117

Query: 538 RLEALPKGLHNLTSLQQLTIG--KGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGR 595
           ++  +   L  L++LQ L +   +   +  L   GL TNL  L I +  ++  S +    
Sbjct: 118 QITDVT-PLAGLSNLQVLYLDLNQITNISPLA--GL-TNLQYLSIGNA-QV--SDLTP-- 168

Query: 596 GFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSI 655
                ++L +LT +  DD+ +S               LP +L  + + N  N     S +
Sbjct: 169 ----LANLSKLTTLKADDNKISDISPLAS--------LP-NLIEVHLKN--NQISDVSPL 213

Query: 656 VDLQNLTSLYLLDCP 670
            +  NL  + L +  
Sbjct: 214 ANTSNLFIVTLTNQT 228

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 36/194 (18%), Positives = 78/194 (40%), Gaps = 31/194 (15%)

Query: 444 LESLEVG---NLPPSLKSLSVYGCSKLESIAERL-DNNTSLEYINISNCENLKILPSGL- 498
           ++++E G   +L   L +L + G + ++S+A       +SL+ +      NL  L +   
Sbjct: 64  IQTIEDGAYQSLS-HLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPI 120

Query: 499 HNLRQLQEITIQRCGN-LESFPEGGLLCAKLTRLTILD--CKRLEALPKG-LHNLTSLQQ 554
            +L+ L+E+ +    N ++SF       + LT L  LD    +++++    L  L  +  
Sbjct: 121 GHLKTLKELNVAH--NLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 555 LTIG------KGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI 608
           L +           +       +   L  L ++ N       +  G  F R +SL+++ +
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEI--RLKELALDTNQL---KSVPDG-IFDRLTSLQKIWL 231

Query: 609 IN----CDDDMVSF 618
                 C    + +
Sbjct: 232 HTNPWDCSCPRIDY 245

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 34/287 (11%), Positives = 87/287 (30%), Gaps = 16/287 (5%)

Query: 306 PQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLE 365
           P +  S      + + +    V +      ++   +   +  A  L  +           
Sbjct: 264 PLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWT 323

Query: 366 ILSIWVCHSLTYLAGVQLPR---SLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEH 422
                    L         R   + ++L        ++  ++  ++S    +      + 
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKW 383

Query: 423 LHIESCPSLTRIFSKNELPATLESLE-VGNLPPSLKSLSVYGCSK-LESIAERLDNNTSL 480
             +     +  +        TL+    +  + P   +      SK L   +        +
Sbjct: 384 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443

Query: 481 EYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCK--R 538
             +++++ +   +    L  L  +  + +     L + P      A L  L +L      
Sbjct: 444 RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHN-RLRALPPA---LAALRCLEVLQASDNA 497

Query: 539 LEALPKGLHNLTSLQQLTIG--KGGELPSLEEDGLPTNLHSLWIEDN 583
           LE +  G+ NL  LQ+L +   +  +  +++       L  L ++ N
Sbjct: 498 LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 36/319 (11%), Positives = 82/319 (25%), Gaps = 75/319 (23%)

Query: 308 SSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEIL 367
              S+  L    IY     +    + +  K    + R           + S      + +
Sbjct: 24  EDFSIEQLPAKTIYALGENIDLTGLNVTGKYDDGKQRPVKVTSEQISGFSSSVPVDKQEV 83

Query: 368 SIWVCHSLTYLAGVQLPRSLKRLVILN-CDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIE 426
           +I +       +    P  ++  V+         + +   ++S     + +S +  + + 
Sbjct: 84  TITIEGKQKSFSVHISPVRVENGVLTEILKGYNEIILPNSVKSIPKDAFRNSQIAKVVLN 143

Query: 427 SCPSLTRI----FSKNELPATLESLEVGNLPPSLKSLSV---YGCSKLESI--------- 470
               L  I    F  +    T++ +     P +L+ L     Y C  L+           
Sbjct: 144 E--GLKSIGDMAFFNS----TVQEI---VFPSTLEQLKEDIFYYCYNLKKADLSKTKITK 194

Query: 471 -AERLDNNTSLEYINI------------SNCENLK--ILPSGLHNLRQ-------LQEIT 508
                     +E + +                 LK   +P  +  + Q       +  + 
Sbjct: 195 LPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVK 254

Query: 509 I------------QRCGNLES--FPEGGLLCAKLTRL---TILDCKRLEA--LPKGL--- 546
           +              C  L                 +    +  C +L    +P+ +   
Sbjct: 255 LPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRIL 314

Query: 547 -----HNLTSLQQLTIGKG 560
                     + QLTI   
Sbjct: 315 GQGLLGGNRKVTQLTIPAN 333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 18/142 (12%)

Query: 451 NLPPSLKSLSVY--GCSKLESIAERLDNNTSLEYINISNCENLKILPSGL-HNLRQLQEI 507
            +P + + L ++    +KLE      D+  +L+ + + + + L  LP G+  +L QL  +
Sbjct: 37  GIPTNAQILYLHDNQITKLEPGV--FDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVL 93

Query: 508 TIQRCGN-LESFPEGGLLCAKLTRLTILD--CKRLEALPKGLHNLTSLQQLTIGKGGELP 564
            +    N L   P    +  +L  L  L   C +L  LP+G+  LT L  L + +  +L 
Sbjct: 94  DLGT--NQLTVLPSA--VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLK 148

Query: 565 SLEE---DGLPTNLHSLWIEDN 583
           S+     D L ++L   ++  N
Sbjct: 149 SIPHGAFDRL-SSLTHAYLFGN 169

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 28/252 (11%), Positives = 75/252 (29%), Gaps = 37/252 (14%)

Query: 429 PSLTRI-FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAER-LDNNTSLEYINIS 486
             L  +   +      + +     L  SL  L +   ++   +     +   +LE + ++
Sbjct: 54  QDLQFLKVEQQTPGLVIRNNTFRGLS-SLIILKLDY-NQFLQLETGAFNGLANLEVLTLT 111

Query: 487 NCE-NLKILPSGL-HNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCK--RLEAL 542
            C  +  +L       L  L+ + ++   N++           + R  +LD    +++++
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFF-LNMRRFHVLDLTFNKVKSI 169

Query: 543 PKG-LHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFS 601
            +  L N        +     L S+    +           N               + +
Sbjct: 170 CEEDLLNFQGKHFTLL----RLSSITLQDMNEYWLGWEKCGN-------------PFKNT 212

Query: 602 SLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASL-------TSLWISNFPNLERLSSS 654
           S+  L +            +     +  T      L       +S   +NF + +  +  
Sbjct: 213 SITTLDLSGNGFKES--MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 655 IVDLQNLTSLYL 666
            ++   + +  L
Sbjct: 271 GLEASGVKTCDL 282

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 45/259 (17%), Positives = 79/259 (30%), Gaps = 53/259 (20%)

Query: 455 SLKSLSVYGCS----KLESIAERLDNNTSLEYINISNC----ENLKILPSGLHNLRQLQE 506
           S++  S+   +      +S+   L  + S++ I +S      E  + L   + + + L+ 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 507 ITIQRCG----------NLESFPEGGLLCAKLTRLTILDC----KRLEALPKGLHNLTSL 552
                             L    +  L C KL  + + D        E L   L   T L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 553 QQLT-----IGKGG---------ELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFH 598
           + L      +G            EL   ++      L S+    N     SM E  + F 
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184

Query: 599 RFSSLRRLTIINCD--DDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNL------ER 650
               L  + ++      + +          L   L     L  L + +  N         
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHL-------LLEGLAYCQELKVLDLQD--NTFTHLGSSA 235

Query: 651 LSSSIVDLQNLTSLYLLDC 669
           L+ ++    NL  L L DC
Sbjct: 236 LAIALKSWPNLRELGLNDC 254

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 45/295 (15%), Positives = 90/295 (30%), Gaps = 79/295 (26%)

Query: 425 IESCPSLTRI-FSKNEL--PATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLE 481
            ++     +    K  +    T   L       S+  +       ++S+ + +    ++ 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNEL------NSIDQIIANNS-DIKSV-QGIQYLPNVT 71

Query: 482 YINISNCENLKILPSGLHNLRQLQEITIQRCG--NLESFPEGGLLCAKLTRLTILDCK-- 537
            + ++  +   I    L NL+ L  + +      +L S          L +L  L  +  
Sbjct: 72  KLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLSSL-------KDLKKLKSLSLEHN 122

Query: 538 RLEALPKGLHNLTSLQQLTIGKGG--ELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGR 595
            +  +  GL +L  L+ L +G     ++  L    L T L +L +EDN       I    
Sbjct: 123 GISDIN-GLVHLPQLESLYLGNNKITDITVLS--RL-TKLDTLSLEDNQ------ISDIV 172

Query: 596 GFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSI 655
                + L+ L +                                 IS+   L       
Sbjct: 173 PLAGLTKLQNLYLSKNH-----------------------------ISDLRALA------ 197

Query: 656 VDLQNLTSLYLLDCP----KLRYFPEKGLPSSLLQLHIYRCPLIEEKCRKDGGQY 706
             L+NL  L L         + +     +P+++         L+  +   D G Y
Sbjct: 198 -GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS---LVTPEIISDDGDY 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	725
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.98
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.81
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.81
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.81
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.75
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.72
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.72
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.71
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.67
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.61
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.61
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.61
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.6
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.57
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.57
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.56
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.55
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.55
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.55
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.53
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.53
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.5
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.48
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.45
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.43
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.42
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.41
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.39
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.36
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.36
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.35
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.34
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.31
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.29
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.26
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.24
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.24
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.2
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.2
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.19
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.19
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.03
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.03
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.01
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.0
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.99
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.98
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.92
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.9
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.88
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.86
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.86
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.86
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.81
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.78
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.78
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.72
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.66
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.64
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.45
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.39
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.13
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.02
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.94
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.55
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.12
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.09
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.82
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.85
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	89.75
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	88.88
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.67

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.8e-46  Score=429.06  Aligned_cols=249  Identities=17%  Similarity=0.079  Sum_probs=145.2

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      +|+.|++++|...+.+|..+..+++|+.|++++|.....+|..+..+++|++|++++|.....+|..+..+++|++|+++
T Consensus       443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  522 (768)
T 3rgz_A          443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS  522 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence            35555555554444444444455555555555544443444444445555555555544444444444445555555555


Q ss_pred             cccCccccccccCCCCCcceeecCCCCCCCCcc-----------------------------------------------
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE-----------------------------------------------  567 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-----------------------------------------------  567 (725)
                      +|...+.+|..+..+++|++|++++|.....+|                                               
T Consensus       523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (768)
T 3rgz_A          523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE  602 (768)
T ss_dssp             SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred             CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence            554444444444555555555554442110000                                               


Q ss_pred             ------------------------cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCc
Q 048826          568 ------------------------EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPE  623 (725)
Q Consensus       568 ------------------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~  623 (725)
                                              ..+.+++|++|++++|+... .   .+..+..+++|+.|++++| .....+|..++
T Consensus       603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-~---ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~  677 (768)
T 3rgz_A          603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-Y---IPKEIGSMPYLFILNLGHN-DISGSIPDEVG  677 (768)
T ss_dssp             GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS-C---CCGGGGGCTTCCEEECCSS-CCCSCCCGGGG
T ss_pred             hhhccccccccccccceecccCchhhhccccccEEECcCCcccc-c---CCHHHhccccCCEEeCcCC-ccCCCCChHHh
Confidence                                    12234788999999996532 2   2356888999999999983 44557787764


Q ss_pred             ccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEecCCchhHH----hh
Q 048826          624 DVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIEE----KC  699 (725)
Q Consensus       624 ~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~----~~  699 (725)
                               .+++|+.|++++|+....+|..+..+++|+.|++++|+....+|..+.+.++....+.++|.|..    .|
T Consensus       678 ---------~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C  748 (768)
T 3rgz_A          678 ---------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC  748 (768)
T ss_dssp             ---------GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCC
T ss_pred             ---------CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCC
Confidence                     67899999999987777899988999999999999987777788877666666666667665433    47


Q ss_pred             hccCCcccccccccceEE
Q 048826          700 RKDGGQYWDLLTHIPYAR  717 (725)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~  717 (725)
                      ...+.++|++++|++.++
T Consensus       749 ~~~~~~~~~~~~~~~~~~  766 (768)
T 3rgz_A          749 DPSNADGYAHHQRSHHHH  766 (768)
T ss_dssp             CSCC--------------
T ss_pred             CCCccCCCCCCCCccccC
Confidence            778889999999998765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.1e-41  Score=393.18  Aligned_cols=576  Identities=16%  Similarity=0.089  Sum_probs=402.3

Q ss_pred             CCcceEEEeccCCCC----CCCCcCCCCCCCccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccc--cccCCC
Q 048826           30 KNLKQFCISGYGGTK----FPTWLGDSSFSNLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGS--EFYGND  102 (725)
Q Consensus        30 ~~L~~L~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~--~~~~~~  102 (725)
                      .+++.|++++++...    +|..+..  +++|+.++++.+ .+..+|. ++.+++|++|++++|..-..++.  .+    
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~--L~~L~~l~~~~~-~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l----  122 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLS--LTGLESLFLSNS-HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSL----  122 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTT--CTTCCEEECTTS-CEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGG----
T ss_pred             CcEEEEECCCCCcCCccCccChhHhc--cCcccccCCcCC-CcCCCchhhccCCCCCEEECCCCcCCCcCCChHHH----
Confidence            467777777666533    4444433  666777776665 3444545 78888888888888774444554  22    


Q ss_pred             CCCCCCCcceeeecccccccccccCCCCCCC-CCCCCccEEEeccCcCccccc------CCCCCcceeeeeccChhh-hh
Q 048826          103 SSTPFPCLETLRFEDMEEWEDWIPHGSSQGV-EGFPKLRELHVIRCSKLQGTF------PEHLPALEMLAIEKCEEL-LA  174 (725)
Q Consensus       103 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~------p~~l~~L~~L~l~~~~~l-~~  174 (725)
                        ..+++|++|+++++ .+....    +..+ ..+++|++|++++| .+++..      ...+++|++|++++|... ..
T Consensus       123 --~~l~~L~~L~Ls~n-~l~~~~----~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  194 (768)
T 3rgz_A          123 --GSCSGLKFLNVSSN-TLDFPG----KVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDV  194 (768)
T ss_dssp             --GGCTTCCEEECCSS-EEECCS----SCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCC
T ss_pred             --hCCCCCCEEECcCC-ccCCcC----CHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCcccccC
Confidence              33777888888875 333322    2333 66788888888877 454333      245677888888877633 22


Q ss_pred             hccCCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCC--CCCccceeeeccccchhHHhhhhhhhh
Q 048826          175 SITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKP--RLPKLEELEINDMKEQTYIWKSHNELL  252 (725)
Q Consensus       175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~  252 (725)
                      .+..+++|++|++++|....                           .++.  .+++|+.|.+.++.-.    ...+..+
T Consensus       195 ~~~~l~~L~~L~Ls~n~l~~---------------------------~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~l  243 (768)
T 3rgz_A          195 DVSRCVNLEFLDVSSNNFST---------------------------GIPFLGDCSALQHLDISGNKLS----GDFSRAI  243 (768)
T ss_dssp             BCTTCTTCCEEECCSSCCCS---------------------------CCCBCTTCCSCCEEECCSSCCC----SCHHHHT
T ss_pred             CcccCCcCCEEECcCCcCCC---------------------------CCcccccCCCCCEEECcCCcCC----CcccHHH
Confidence            34677888888888876332                           1111  2445555555544321    1234456


Q ss_pred             hhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCC-CCCcEEEeecCCCccccC-
Q 048826          253 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSL-SSLREIEIYKCSSLVSFP-  330 (725)
Q Consensus       253 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~-  330 (725)
                      ..+++|++|++++|.....++..       .+    ++|++|++++|.+.+.+|..+... ++|++|++++|.....++ 
T Consensus       244 ~~l~~L~~L~Ls~n~l~~~~~~~-------~l----~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~  312 (768)
T 3rgz_A          244 STCTELKLLNISSNQFVGPIPPL-------PL----KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP  312 (768)
T ss_dssp             TTCSSCCEEECCSSCCEESCCCC-------CC----TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG
T ss_pred             hcCCCCCEEECCCCcccCccCcc-------cc----CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch
Confidence            88899999999997544333321       22    789999999998877888887664 899999999986443443 


Q ss_pred             CCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCccccccc-c-cccccceEEeecCCCccccccccccc
Q 048826          331 EVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGV-Q-LPRSLKRLVILNCDNIRTLTMEEGIQ  408 (725)
Q Consensus       331 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~-~~~~L~~L~l~~~~~l~~~~~~~~~~  408 (725)
                      .++.+++|++|++++|.....++.... ..+++|++|++++|.....++.. . ..++|+.|+++++.....++....  
T Consensus       313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~--  389 (768)
T 3rgz_A          313 FFGSCSLLESLALSSNNFSGELPMDTL-LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC--  389 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCHHHH-TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT--
T ss_pred             HHhcCCCccEEECCCCcccCcCCHHHH-hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh--
Confidence            345588999999999876556665421 34588999999888544344433 2 224889999888754333221100  


Q ss_pred             cCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCC
Q 048826          409 SSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNC  488 (725)
Q Consensus       409 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~  488 (725)
                           ....++|++|+++++. +..     ..|..+..     + ++|+.|++++|...+.+|..++.+++|+.|++++|
T Consensus       390 -----~~~~~~L~~L~L~~n~-l~~-----~~p~~l~~-----l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  452 (768)
T 3rgz_A          390 -----QNPKNTLQELYLQNNG-FTG-----KIPPTLSN-----C-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN  452 (768)
T ss_dssp             -----CSTTCCCCEEECCSSE-EEE-----ECCGGGGG-----C-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             -----hcccCCccEEECCCCc-ccc-----ccCHHHhc-----C-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence                 0113469999988752 222     12222222     1 47999999999998899999999999999999998


Q ss_pred             CCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcc-
Q 048826          489 ENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE-  567 (725)
Q Consensus       489 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-  567 (725)
                      .....+|..+..+++|++|++++|.....+|..+..+++|++|++++|.....+|.++..+++|++|++++|.....++ 
T Consensus       453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  532 (768)
T 3rgz_A          453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA  532 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred             cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence            8777889999999999999999998888899999999999999999999888999999999999999999996544444 


Q ss_pred             cCCCcccccceecccchhhHHHHhh-------------------------------------------------------
Q 048826          568 EDGLPTNLHSLWIEDNMEIWKSMIE-------------------------------------------------------  592 (725)
Q Consensus       568 ~~~~~~~L~~L~l~~n~~~~~~~~~-------------------------------------------------------  592 (725)
                      ..+.+++|++|++++|+... .++.                                                       
T Consensus       533 ~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (768)
T 3rgz_A          533 ELGDCRSLIWLDLNTNLFNG-TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN  611 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEES-BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred             HHcCCCCCCEEECCCCccCC-cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence            34567999999999996531 0000                                                       


Q ss_pred             ------------ccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcC
Q 048826          593 ------------RGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQN  660 (725)
Q Consensus       593 ------------~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~  660 (725)
                                  .+..+..+++|+.|++++| .....+|..++         .+++|+.|++++|.....+|..+..+++
T Consensus       612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~---------~l~~L~~L~Ls~N~l~g~ip~~l~~L~~  681 (768)
T 3rgz_A          612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIG---------SMPYLFILNLGHNDISGSIPDEVGDLRG  681 (768)
T ss_dssp             CSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGGGG---------GCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             ccccccceecccCchhhhccccccEEECcCC-cccccCCHHHh---------ccccCCEEeCcCCccCCCCChHHhCCCC
Confidence                        0113445678999999984 44557777764         6899999999997766799999999999


Q ss_pred             CCeEeccCCCCCcccCCC-CCcccccEEEecCCc
Q 048826          661 LTSLYLLDCPKLRYFPEK-GLPSSLLQLHIYRCP  693 (725)
Q Consensus       661 L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~  693 (725)
                      |+.|++++|.....+|.. +.+++|++|++++++
T Consensus       682 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             CCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             CCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            999999997655566654 236889999999975

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.7e-36  Score=343.41  Aligned_cols=562  Identities=16%  Similarity=0.096  Sum_probs=343.4

Q ss_pred             CCcceEEEeccCCCCCCCC-cCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCC
Q 048826           30 KNLKQFCISGYGGTKFPTW-LGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTP  106 (725)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  106 (725)
                      +++++|+++++....+|.. +..  +++|++|++++| .+..+++  ++.+++|++|++++|. +..++...+     ..
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~-----~~   95 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTF-----AF   95 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGG--GTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTT-----TT
T ss_pred             CCCcEEECCCCCCCCcCHHHHhC--CCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCc-cCccChhhh-----cc
Confidence            7899999999998877653 443  889999999998 6666644  8899999999999986 788876533     33


Q ss_pred             CCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCC---CCCcceeeeeccChhh---hhh--ccC
Q 048826          107 FPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPE---HLPALEMLAIEKCEEL---LAS--ITC  178 (725)
Q Consensus       107 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l---~~~--~~~  178 (725)
                      +++|++|+++++ ++.+..    +..+..+++|++|++++| .+++..|.   .+++|++|++++|...   ...  ...
T Consensus        96 l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  169 (680)
T 1ziw_A           96 CTNLTELHLMSN-SIQKIK----NNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA  169 (680)
T ss_dssp             CTTCSEEECCSS-CCCCCC----SCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred             CCCCCEEECCCC-ccCccC----hhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence            889999999986 455542    456788999999999988 55544443   4678999999887632   222  235


Q ss_pred             CCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCC
Q 048826          179 LPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSL  258 (725)
Q Consensus       179 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L  258 (725)
                      +++|+.|++++|.........                        -..+++|+.|.+.++............. ...++|
T Consensus       170 ~~~L~~L~L~~n~l~~~~~~~------------------------~~~l~~L~~L~l~~~~l~~~~~~~~~~~-l~~~~L  224 (680)
T 1ziw_A          170 NSSLKKLELSSNQIKEFSPGC------------------------FHAIGRLFGLFLNNVQLGPSLTEKLCLE-LANTSI  224 (680)
T ss_dssp             TCEESEEECTTCCCCCBCTTG------------------------GGGSSEECEEECTTCCCHHHHHHHHHHH-HTTSCC
T ss_pred             cccccEEECCCCcccccChhh------------------------hhhhhhhhhhhccccccChhhHHHHHHH-hhhccc
Confidence            688999999988644322110                        0124455556555543322211111111 134788


Q ss_pred             cEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccC-CCCCCCC
Q 048826          259 KRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFP-EVALPSK  337 (725)
Q Consensus       259 ~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~  337 (725)
                      ++|+++++ .++.+.+..    +..+.  .++|++|++++|.+.+..+..++.+++|++|++++|......+ .+..+++
T Consensus       225 ~~L~L~~n-~l~~~~~~~----~~~l~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  297 (680)
T 1ziw_A          225 RNLSLSNS-QLSTTSNTT----FLGLK--WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN  297 (680)
T ss_dssp             CEEECTTS-CCCEECTTT----TGGGG--GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTT
T ss_pred             cEEEccCC-cccccChhH----hhccC--cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCC
Confidence            99999885 444443322    22220  0358999999988876677788888999999999886433333 3455888


Q ss_pred             CceEEeeccCccc-----ccccc--cccCCCCcccEEEeeccCCccccccc--ccccccceEEeecCCCccccccccccc
Q 048826          338 LKKIQFRECDALK-----LLPEA--WMSDTNSSLEILSIWVCHSLTYLAGV--QLPRSLKRLVILNCDNIRTLTMEEGIQ  408 (725)
Q Consensus       338 L~~L~l~~~~~~~-----~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~  408 (725)
                      |+.|+++++....     .++..  ..-..+++|++|++++|.. ..+...  ...++|+.|++.++..           
T Consensus       298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~~-----------  365 (680)
T 1ziw_A          298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI-PGIKSNMFTGLINLKYLSLSNSFT-----------  365 (680)
T ss_dssp             CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB-CCCCTTTTTTCTTCCEEECTTCBS-----------
T ss_pred             ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc-CCCChhHhccccCCcEEECCCCch-----------
Confidence            8888888764322     11110  0112346677777766632 222211  2234444444444321           


Q ss_pred             cCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCC
Q 048826          409 SSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNC  488 (725)
Q Consensus       409 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~  488 (725)
                                           .+.. .+...+...      .  .++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus       366 ---------------------~~~~-l~~~~f~~~------~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  415 (680)
T 1ziw_A          366 ---------------------SLRT-LTNETFVSL------A--HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN  415 (680)
T ss_dssp             ---------------------CCCE-ECTTTTGGG------T--TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ---------------------hhhh-cchhhhccc------c--cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence                                 0111 111111100      0  024777777777766666667777777777777776


Q ss_pred             CCccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCc--cccccccCCCCCcceeecCCCCCCCC
Q 048826          489 ENLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRL--EALPKGLHNLTSLQQLTIGKGGELPS  565 (725)
Q Consensus       489 ~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~  565 (725)
                      .....+| ..+.++++|++|++++|......+..+..+++|+.|++++|...  ..+|..+..+++|++|++++|. +..
T Consensus       416 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~  494 (680)
T 1ziw_A          416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IAN  494 (680)
T ss_dssp             CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCC
T ss_pred             cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCc
Confidence            5544454 45666777777777776655555556666777777777777643  4556667777777777777773 333


Q ss_pred             ccc--CCCcccccceecccchhhHHHHhh----ccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcE
Q 048826          566 LEE--DGLPTNLHSLWIEDNMEIWKSMIE----RGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTS  639 (725)
Q Consensus       566 ~~~--~~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~  639 (725)
                      ++.  ...+++|++|++++|.........    ....+..+++|+.|++++  +.+..+|...        +..+++|+.
T Consensus       495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~--------~~~l~~L~~  564 (680)
T 1ziw_A          495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEIPVEV--------FKDLFELKI  564 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCCCTTT--------TTTCTTCCE
T ss_pred             CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC--CCCCCCCHHH--------cccccCcce
Confidence            322  334577777777777543210000    001256677777777777  3444555542        235677777


Q ss_pred             EEeccCccccccccc-ccCCcCCCeEeccCCCCCcccCCCC---CcccccEEEecCCc
Q 048826          640 LWISNFPNLERLSSS-IVDLQNLTSLYLLDCPKLRYFPEKG---LPSSLLQLHIYRCP  693 (725)
Q Consensus       640 L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~c~  693 (725)
                      |++++ +.++.+|.. +..+++|+.|++++| .++.+++..   .+++|+.|+++++|
T Consensus       565 L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          565 IDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             EECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             eECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence            77777 456666653 356777777777774 555555432   24677777777765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2e-35  Score=338.19  Aligned_cols=540  Identities=16%  Similarity=0.135  Sum_probs=378.7

Q ss_pred             cCCCCCCcceEEEeccCCCCC-CCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCC
Q 048826           25 MLKPHKNLKQFCISGYGGTKF-PTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGN  101 (725)
Q Consensus        25 ~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~  101 (725)
                      +|..+++|++|+++++....+ |..+..  +++|++|++++| .+..+|.  ++.+++|++|++++|. +..+++..+  
T Consensus        44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--  117 (680)
T 1ziw_A           44 NFTRYSQLTSLDVGFNTISKLEPELCQK--LPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPF--  117 (680)
T ss_dssp             GGGGGTTCSEEECCSSCCCCCCTTHHHH--CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTT--
T ss_pred             HHhCCCcCcEEECCCCccCccCHHHHhc--ccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHc--
Confidence            577889999999999988776 444544  899999999998 7888886  9999999999999997 777776543  


Q ss_pred             CCCCCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCC-----CCCcceeeeeccChhh---h
Q 048826          102 DSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPE-----HLPALEMLAIEKCEEL---L  173 (725)
Q Consensus       102 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~-----~l~~L~~L~l~~~~~l---~  173 (725)
                         ..+++|++|+++++ .+....    +..+..+++|++|++++| .+++..+.     .+++|++|++++|...   .
T Consensus       118 ---~~l~~L~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  188 (680)
T 1ziw_A          118 ---VKQKNLITLDLSHN-GLSSTK----LGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSP  188 (680)
T ss_dssp             ---TTCTTCCEEECCSS-CCSCCC----CCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred             ---cccCCCCEEECCCC-cccccC----chhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCcccccCh
Confidence               34899999999996 455443    455688999999999998 55533222     3478999999998632   4


Q ss_pred             hhccCCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhh
Q 048826          174 ASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQ  253 (725)
Q Consensus       174 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  253 (725)
                      ..+..+++|+.+.+.++.........         .+.          .  ....+|+.|.+.++.-..    ..+..+.
T Consensus       189 ~~~~~l~~L~~L~l~~~~l~~~~~~~---------~~~----------~--l~~~~L~~L~L~~n~l~~----~~~~~~~  243 (680)
T 1ziw_A          189 GCFHAIGRLFGLFLNNVQLGPSLTEK---------LCL----------E--LANTSIRNLSLSNSQLST----TSNTTFL  243 (680)
T ss_dssp             TGGGGSSEECEEECTTCCCHHHHHHH---------HHH----------H--HTTSCCCEEECTTSCCCE----ECTTTTG
T ss_pred             hhhhhhhhhhhhhccccccChhhHHH---------HHH----------H--hhhccccEEEccCCcccc----cChhHhh
Confidence            56778899999999887632100000         000          0  013667777777654321    2233445


Q ss_pred             hcC--CCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCcc----
Q 048826          254 DIC--SLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLV----  327 (725)
Q Consensus       254 ~~~--~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~----  327 (725)
                      .++  +|++|++++| .++.+++..    +..+    ++|++|++++|.+.+..+..+..+++|++|++++|....    
T Consensus       244 ~l~~~~L~~L~Ls~n-~l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~  314 (680)
T 1ziw_A          244 GLKWTNLTMLDLSYN-NLNVVGNDS----FAWL----PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL  314 (680)
T ss_dssp             GGGGSCCCEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred             ccCcCCCCEEECCCC-CcCccCccc----ccCc----ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence            554  5999999996 466555432    4444    899999999999988888899999999999999764221    


Q ss_pred             -ccC-----CCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCC-cccccccccccccceEEeecCCCccc
Q 048826          328 -SFP-----EVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHS-LTYLAGVQLPRSLKRLVILNCDNIRT  400 (725)
Q Consensus       328 -~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~L~~L~l~~~~~l~~  400 (725)
                       .++     .+..+++|++|++++|......+..+  ..+++|++|++++|.. ...++...+.                
T Consensus       315 ~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~~~~~~l~~~~f~----------------  376 (680)
T 1ziw_A          315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF--TGLINLKYLSLSNSFTSLRTLTNETFV----------------  376 (680)
T ss_dssp             --CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT--TTCTTCCEEECTTCBSCCCEECTTTTG----------------
T ss_pred             ccccccChhhcccCCCCCEEECCCCccCCCChhHh--ccccCCcEEECCCCchhhhhcchhhhc----------------
Confidence             222     34558999999999997544333333  3458999999998752 2222211110                


Q ss_pred             cccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhh-hhhcCCCC
Q 048826          401 LTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIA-ERLDNNTS  479 (725)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~l~~  479 (725)
                                   ....+.|++|+++++ ++.. .....+..         + ++|+.|++++|.+.+.++ ..+..+++
T Consensus       377 -------------~~~~~~L~~L~L~~n-~l~~-~~~~~~~~---------l-~~L~~L~L~~N~l~~~~~~~~~~~l~~  431 (680)
T 1ziw_A          377 -------------SLAHSPLHILNLTKN-KISK-IESDAFSW---------L-GHLEVLDLGLNEIGQELTGQEWRGLEN  431 (680)
T ss_dssp             -------------GGTTSCCCEEECTTS-CCCE-ECTTTTTT---------C-TTCCEEECCSSCCEEECCSGGGTTCTT
T ss_pred             -------------ccccCcCceEECCCC-CCCe-EChhhhhC---------C-CCCCEEeCCCCcCccccCcccccCccc
Confidence                         000022555555543 2222 11111111         1 468999999988776554 67888999


Q ss_pred             ccEEEecCCCCcccccccccCCCcccEEEeccCCCc--cccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeec
Q 048826          480 LEYINISNCENLKILPSGLHNLRQLQEITIQRCGNL--ESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTI  557 (725)
Q Consensus       480 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  557 (725)
                      |+.|++++|......+..+..+++|+.|++++|...  ..+|..+..+++|+.|++++|......+..+..+++|++|++
T Consensus       432 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L  511 (680)
T 1ziw_A          432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL  511 (680)
T ss_dssp             CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeC
Confidence            999999997655555667788899999999987643  567778888899999999998865545556788999999999


Q ss_pred             CCCCCCCCcc----------cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCccccc
Q 048826          558 GKGGELPSLE----------EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRL  627 (725)
Q Consensus       558 ~~~~~l~~~~----------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~  627 (725)
                      ++|. +..++          ....+++|++|++++|...  .++.  ..+..+++|+.|++++  +.+..+|....    
T Consensus       512 s~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~--~~~~~l~~L~~L~Ls~--N~l~~l~~~~~----  580 (680)
T 1ziw_A          512 QHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFD--EIPV--EVFKDLFELKIIDLGL--NNLNTLPASVF----  580 (680)
T ss_dssp             CSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--CCCT--TTTTTCTTCCEEECCS--SCCCCCCTTTT----
T ss_pred             CCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCCC--CCCH--HHcccccCcceeECCC--CCCCcCCHhHh----
Confidence            9984 32221          1345689999999999654  2222  4578899999999988  56667776542    


Q ss_pred             CcccCCCCCCcEEEeccCccccccccc-cc-CCcCCCeEeccCCCCC
Q 048826          628 GTTLPLPASLTSLWISNFPNLERLSSS-IV-DLQNLTSLYLLDCPKL  672 (725)
Q Consensus       628 ~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~-~~~~L~~L~l~~c~~l  672 (725)
                          ..+++|+.|++++| .++.++.. +. .+++|+.|++++||-.
T Consensus       581 ----~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          581 ----NNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             ----TTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             ----CCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence                36799999999995 56666643 34 6899999999997754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.4e-34  Score=324.69  Aligned_cols=422  Identities=16%  Similarity=0.120  Sum_probs=220.3

Q ss_pred             cceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCC
Q 048826           32 LKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPC  109 (725)
Q Consensus        32 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  109 (725)
                      .+.++.++.+...+|..+    .+++++|++++| .++.+++  ++.+++|++|++++|. ++.+++..++     .+++
T Consensus        13 ~~~~~c~~~~l~~ip~~~----~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~-----~l~~   81 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDI----PSSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWH-----GLHH   81 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS----CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTT-----TCTT
T ss_pred             CCceEccCCCcccCCCCC----CCCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhh-----chhh
Confidence            356777777788888655    368899999887 6777765  8888999999999886 7777654432     3788


Q ss_pred             cceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccC----CCCCcceeeeeccChh----hhhhccCCCc
Q 048826          110 LETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFP----EHLPALEMLAIEKCEE----LLASITCLPA  181 (725)
Q Consensus       110 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~----l~~~~~~~~~  181 (725)
                      |++|+++++ .++...    +..+..+++|++|++++| .++ .++    ..+++|++|++++|..    ++..++.+++
T Consensus        82 L~~L~Ls~n-~l~~~~----p~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~  154 (606)
T 3vq2_A           82 LSNLILTGN-PIQSFS----PGSFSGLTSLENLVAVET-KLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN  154 (606)
T ss_dssp             CCEEECTTC-CCCCCC----TTSSTTCTTCCEEECTTS-CCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred             cCEeECCCC-cccccC----hhhcCCcccCCEEEccCC-ccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence            888888885 455543    566788888888888888 444 222    2345566666665542    1344566666


Q ss_pred             ccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCC-CcE
Q 048826          182 LCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICS-LKR  260 (725)
Q Consensus       182 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-L~~  260 (725)
                      |++|++++|.........                           +                      ..+..++. +++
T Consensus       155 L~~L~Ls~n~l~~~~~~~---------------------------~----------------------~~l~~L~~~l~~  185 (606)
T 3vq2_A          155 LVHVDLSYNYIQTITVND---------------------------L----------------------QFLRENPQVNLS  185 (606)
T ss_dssp             CCEEECCSSCCCEECTTT---------------------------T----------------------HHHHHCTTCCCE
T ss_pred             CCEEEccCCcceecChhh---------------------------h----------------------hhhhccccccce
Confidence            666666665433211100                           0                      01122222 457


Q ss_pred             EEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc-ccccccCCCCCCcEEEeecCCCc--cccCC--CCCC
Q 048826          261 LTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV-KLPQSSLSLSSLREIEIYKCSSL--VSFPE--VALP  335 (725)
Q Consensus       261 L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~--~~~~~--~~~l  335 (725)
                      |+++++ .++.+++..+     ..    .+|+.|++++|...+ .++..++++++|+.+++......  ..+..  ...+
T Consensus       186 L~l~~n-~l~~~~~~~~-----~~----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~  255 (606)
T 3vq2_A          186 LDMSLN-PIDFIQDQAF-----QG----IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM  255 (606)
T ss_dssp             EECTTC-CCCEECTTTT-----TT----CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred             eeccCC-CcceeCcccc-----cC----ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence            777774 4555554321     11    367777777776642 55666777777777766532211  11100  0011


Q ss_pred             C-----CCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccC
Q 048826          336 S-----KLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSS  410 (725)
Q Consensus       336 ~-----~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  410 (725)
                      .     +++.+++.....+......+  ..+++|+.|++.++. +..++.....++|+.|++.+|.. ..++.       
T Consensus       256 ~~l~~l~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-------  324 (606)
T 3vq2_A          256 EGLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQFPT-------  324 (606)
T ss_dssp             TTGGGSEEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSCCC-------
T ss_pred             hhhhhccHhheecccccccccccccc--ccCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-ccccc-------
Confidence            1     23333332222222211111  233566666666553 23333333344555555555443 22220       


Q ss_pred             CCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhh--hhhhhcCCCCccEEEecCC
Q 048826          411 SSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLES--IAERLDNNTSLEYINISNC  488 (725)
Q Consensus       411 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~~  488 (725)
                          +..++|++|+++++..+.. +....+             ++|+.|++++|...+.  ++..+..+++|+.|++++|
T Consensus       325 ----~~l~~L~~L~l~~n~~~~~-~~~~~l-------------~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n  386 (606)
T 3vq2_A          325 ----LDLPFLKSLTLTMNKGSIS-FKKVAL-------------PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN  386 (606)
T ss_dssp             ----CCCSSCCEEEEESCSSCEE-CCCCCC-------------TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred             ----CCCCccceeeccCCcCccc-hhhccC-------------CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence                0123355555555433322 111111             2355555555544333  1344445555555555553


Q ss_pred             CCcccccccccCCCcccEEEeccCCCccccC-CCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCC
Q 048826          489 ENLKILPSGLHNLRQLQEITIQRCGNLESFP-EGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKG  560 (725)
Q Consensus       489 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  560 (725)
                      . +..+|..+..+++|++|++++|......+ ..+..+++|++|++++|......|..+..+++|++|++++|
T Consensus       387 ~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          387 G-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             S-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             c-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence            2 33344444555555555555544333333 23444555555555555544444444555555555555555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.4e-34  Score=320.29  Aligned_cols=408  Identities=15%  Similarity=0.098  Sum_probs=240.5

Q ss_pred             CCcceEEEeccCCCCC-CCCcCCCCCCCccEEEEecCCCCCcC-CC-CCCCCccceeeecCcccceeccccccCCCCCCC
Q 048826           30 KNLKQFCISGYGGTKF-PTWLGDSSFSNLVILKFEDCGMCTTW-PS-VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTP  106 (725)
Q Consensus        30 ~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l-~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  106 (725)
                      +++++|+++++.+..+ |..+..  +++|++|++++| .+..+ |. ++.+++|++|++++|. +..+++..+     ..
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~  103 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSR--LINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETAL-----SG  103 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTT--CTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTT-----SS
T ss_pred             CcCcEEEccCCccCcCChhHhcc--CccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhh-----cc
Confidence            5889999999998876 445544  899999999998 66666 44 8999999999999987 655544333     33


Q ss_pred             CCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCccc-ccCC--CCCcceeeeeccChhh---hhhccCCC
Q 048826          107 FPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQG-TFPE--HLPALEMLAIEKCEEL---LASITCLP  180 (725)
Q Consensus       107 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p~--~l~~L~~L~l~~~~~l---~~~~~~~~  180 (725)
                      +++|++|+++++ .+....    +..+..+++|++|++++| .+++ ..|.  .+++|++|++++|...   ...++.++
T Consensus       104 l~~L~~L~L~~n-~i~~l~----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  177 (606)
T 3t6q_A          104 PKALKHLFFIQT-GISSID----FIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ  177 (606)
T ss_dssp             CTTCCEEECTTS-CCSCGG----GSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred             cccccEeecccc-CcccCC----cchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence            889999999985 455543    355688999999999988 4442 2232  2678999999988633   45677888


Q ss_pred             ccc--EEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCC
Q 048826          181 ALC--KLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSL  258 (725)
Q Consensus       181 ~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L  258 (725)
                      +|+  .|++++|.........                         .....|+.|.+.++.....       .+..+.++
T Consensus       178 ~L~~l~L~l~~n~l~~~~~~~-------------------------~~~~~L~~L~l~~~~~~~~-------~~~~l~~~  225 (606)
T 3t6q_A          178 QATNLSLNLNGNDIAGIEPGA-------------------------FDSAVFQSLNFGGTQNLLV-------IFKGLKNS  225 (606)
T ss_dssp             TCCSEEEECTTCCCCEECTTT-------------------------TTTCEEEEEECTTCSCHHH-------HHHHTTTC
T ss_pred             ccceeEEecCCCccCccChhH-------------------------hhhccccccccCCchhHHH-------Hhhhcccc
Confidence            888  7888888765543221                         1134566777666653222       23444444


Q ss_pred             cE--EEEccCCCcc--cchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccC-CCC
Q 048826          259 KR--LTIDSCPKLQ--SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFP-EVA  333 (725)
Q Consensus       259 ~~--L~l~~~~~l~--~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~  333 (725)
                      +.  +.+..+..+.  .+...    .+..+..  .+|+.|++++|.+.+..+..++.+++|++|++++|. ++.+| .+.
T Consensus       226 ~l~~l~~~~~~~~~~~~i~~~----~~~~l~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~  298 (606)
T 3t6q_A          226 TIQSLWLGTFEDMDDEDISPA----VFEGLCE--MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLV  298 (606)
T ss_dssp             EEEEEECCCCTTSCCCCCCGG----GGGGGGG--SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCC
T ss_pred             chhheechhhccccccccChh----Hhchhhc--CceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhc
Confidence            43  3333332222  12211    1222211  378888888888766666668888888888888875 44554 344


Q ss_pred             CCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCc
Q 048826          334 LPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSR  413 (725)
Q Consensus       334 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  413 (725)
                      .+++|++|++++|......+..+  ..+++|++|++.+|.....++.                                 
T Consensus       299 ~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~---------------------------------  343 (606)
T 3t6q_A          299 GLSTLKKLVLSANKFENLCQISA--SNFPSLTHLSIKGNTKRLELGT---------------------------------  343 (606)
T ss_dssp             SCTTCCEEECTTCCCSBGGGGCG--GGCTTCSEEECCSCSSCCBCCS---------------------------------
T ss_pred             ccccCCEEECccCCcCcCchhhh--hccCcCCEEECCCCCcccccch---------------------------------
Confidence            46777777777776333323222  1235555555554431111110                                 


Q ss_pred             ccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhh--hhhhcCCCCccEEEecCCCCc
Q 048826          414 RYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESI--AERLDNNTSLEYINISNCENL  491 (725)
Q Consensus       414 ~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~  491 (725)
                                              ..+..         + ++|++|++++|...+..  +..+..+++|++|++++|...
T Consensus       344 ------------------------~~~~~---------l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  389 (606)
T 3t6q_A          344 ------------------------GCLEN---------L-ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL  389 (606)
T ss_dssp             ------------------------STTTT---------C-TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred             ------------------------hhhhc---------c-CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence                                    00000         0 23555555555444333  344555556666666554433


Q ss_pred             ccccccccCCCcccEEEeccCCCccccCC-CCcCcCcCceeeeccccCccccccccCCCCCcceeecCCC
Q 048826          492 KILPSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKG  560 (725)
Q Consensus       492 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  560 (725)
                      ...|..+..+++|++|++++|......+. .+..+++|++|++++|......+..+..+++|++|++++|
T Consensus       390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  459 (606)
T 3t6q_A          390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN  459 (606)
T ss_dssp             EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred             cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence            33344555555666666655544333332 2445555666666665544444445555555666665555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.6e-34  Score=323.28  Aligned_cols=518  Identities=15%  Similarity=0.100  Sum_probs=323.4

Q ss_pred             ceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCc
Q 048826           33 KQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCL  110 (725)
Q Consensus        33 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  110 (725)
                      +.++.++.+...+|..+.    .++++|++++| .++.+++  ++.+++|++|++++|. +..+.+..+     ..+++|
T Consensus        15 ~~~~c~~~~l~~iP~~l~----~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-----~~l~~L   83 (606)
T 3t6q_A           15 KTYNCENLGLNEIPGTLP----NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTF-----QSQHRL   83 (606)
T ss_dssp             TEEECTTSCCSSCCTTSC----TTCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTT-----TTCTTC
T ss_pred             ceEECCCCCcccCcCCCC----CcCcEEEccCC-ccCcCChhHhccCccceEEECCCCc-cceeChhhc-----cCcccc
Confidence            457777778888887664    47999999998 7888754  9999999999999997 666655433     338899


Q ss_pred             ceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccC---CCCCcceeeeeccChhh---hhhccCCCcccE
Q 048826          111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFP---EHLPALEMLAIEKCEEL---LASITCLPALCK  184 (725)
Q Consensus       111 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~l---~~~~~~~~~L~~  184 (725)
                      ++|+++++ .+....    +..+..+++|++|++++| .+++.-|   ..+++|++|++++|...   ...+..+++|+.
T Consensus        84 ~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  157 (606)
T 3t6q_A           84 DTLVLTAN-PLIFMA----ETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV  157 (606)
T ss_dssp             CEEECTTC-CCSEEC----TTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred             CeeeCCCC-cccccC----hhhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence            99999985 455543    556788999999999988 4542212   23445555555554422   122223455555


Q ss_pred             EEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCc--EEE
Q 048826          185 LKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLK--RLT  262 (725)
Q Consensus       185 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~--~L~  262 (725)
                      |++++|....                                                    ..+..+..+++|+  .|+
T Consensus       158 L~L~~n~l~~----------------------------------------------------~~~~~~~~l~~L~~l~L~  185 (606)
T 3t6q_A          158 LDFQNNAIHY----------------------------------------------------LSKEDMSSLQQATNLSLN  185 (606)
T ss_dssp             EECCSSCCCE----------------------------------------------------ECHHHHHTTTTCCSEEEE
T ss_pred             EEcccCcccc----------------------------------------------------cChhhhhhhcccceeEEe
Confidence            5555544322                                                    2223345555565  556


Q ss_pred             EccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcE--EEeecCCCccc--cCC--CCC--
Q 048826          263 IDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLRE--IEIYKCSSLVS--FPE--VAL--  334 (725)
Q Consensus       263 l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~--L~L~~~~~~~~--~~~--~~~--  334 (725)
                      ++++ .++.+++..+    . .    .+|+.|++++|...   +..+..+.+++.  +.+........  +..  +..  
T Consensus       186 l~~n-~l~~~~~~~~----~-~----~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~  252 (606)
T 3t6q_A          186 LNGN-DIAGIEPGAF----D-S----AVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC  252 (606)
T ss_dssp             CTTC-CCCEECTTTT----T-T----CEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred             cCCC-ccCccChhHh----h-h----ccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhHhchhh
Confidence            6553 3343333211    1 1    35666666655422   222222222222  22222111110  000  000  


Q ss_pred             CCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCccccccc-ccccccceEEeecCCCccccccccccccCCCc
Q 048826          335 PSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGV-QLPRSLKRLVILNCDNIRTLTMEEGIQSSSSR  413 (725)
Q Consensus       335 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  413 (725)
                      ..+|+.|+++++.. ..++.... ..+++|++|++++|. ++.++.. ...++                           
T Consensus       253 ~~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~l~~n~-l~~lp~~l~~l~~---------------------------  302 (606)
T 3t6q_A          253 EMSVESINLQKHYF-FNISSNTF-HCFSGLQELDLTATH-LSELPSGLVGLST---------------------------  302 (606)
T ss_dssp             GSEEEEEECTTCCC-SSCCTTTT-TTCTTCSEEECTTSC-CSCCCSSCCSCTT---------------------------
T ss_pred             cCceeEEEeecCcc-CccCHHHh-ccccCCCEEeccCCc-cCCCChhhccccc---------------------------
Confidence            11566666666643 32322211 233566666666653 2222211 12223                           


Q ss_pred             ccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhh-hhcCCCCccEEEecCCCCcc
Q 048826          414 RYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAE-RLDNNTSLEYINISNCENLK  492 (725)
Q Consensus       414 ~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~  492 (725)
                            |++|+++++ .+.. .....+         ..+ ++|++|++++|.....++. .+..+++|++|++++|....
T Consensus       303 ------L~~L~l~~n-~l~~-~~~~~~---------~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  364 (606)
T 3t6q_A          303 ------LKKLVLSAN-KFEN-LCQISA---------SNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET  364 (606)
T ss_dssp             ------CCEEECTTC-CCSB-GGGGCG---------GGC-TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred             ------CCEEECccC-CcCc-Cchhhh---------hcc-CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence                  333333332 1111 000001         111 3599999999887755543 48899999999999976554


Q ss_pred             cc--cccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcccccc-ccCCCCCcceeecCCCCCCCCccc-
Q 048826          493 IL--PSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPK-GLHNLTSLQQLTIGKGGELPSLEE-  568 (725)
Q Consensus       493 ~l--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-  568 (725)
                      ..  +..+..+++|++|++++|......+..+..+++|++|++++|......+. .+..+++|++|++++|......+. 
T Consensus       365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  444 (606)
T 3t6q_A          365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL  444 (606)
T ss_dssp             EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred             ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence            43  66788999999999999887777788888999999999999986655554 478999999999999954333222 


Q ss_pred             CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccc
Q 048826          569 DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNL  648 (725)
Q Consensus       569 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  648 (725)
                      ...+++|++|++++|+.....+ ..+..+..+++|+.|++++| ......|..+         ..+++|+.|++++|...
T Consensus       445 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~  513 (606)
T 3t6q_A          445 FDGLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLEILVLSFC-DLSSIDQHAF---------TSLKMMNHVDLSHNRLT  513 (606)
T ss_dssp             TTTCTTCCEEECTTCBCGGGEE-CSSCGGGGCTTCCEEECTTS-CCCEECTTTT---------TTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCEEECCCCCCCcccc-ccchhhccCCCccEEECCCC-ccCccChhhh---------ccccCCCEEECCCCccC
Confidence            4457999999999997643111 11245788999999999995 3333334444         36899999999998766


Q ss_pred             ccccccccCCcCCCeEeccCCCCCcccCCCCC--cccccEEEecCCc
Q 048826          649 ERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGL--PSSLLQLHIYRCP  693 (725)
Q Consensus       649 ~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~  693 (725)
                      ...|..+..+++| .|++++| .++.+++..+  +++|+.|+++++|
T Consensus       514 ~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          514 SSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             GGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred             cCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence            6667788899999 9999996 4556555433  5889999999987

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.4e-33  Score=313.70  Aligned_cols=476  Identities=15%  Similarity=0.119  Sum_probs=313.0

Q ss_pred             CCcceEEEeccCCCCCCC-CcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCC
Q 048826           30 KNLKQFCISGYGGTKFPT-WLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTP  106 (725)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  106 (725)
                      +++++|+++++....++. .+..  +++|++|++++| .+..+++  ++.+++|++|++++|. +..+++..+     ..
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~-----~~  102 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSN--FSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSF-----SG  102 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSS-----TT
T ss_pred             CCcCEEECCCCCcCEeChhhccC--CccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccChhhc-----CC
Confidence            899999999999887765 4544  899999999998 7887754  8999999999999998 777755433     34


Q ss_pred             CCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCccc-ccCC---CCCcceeeeeccChhh---hhhccCC
Q 048826          107 FPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQG-TFPE---HLPALEMLAIEKCEEL---LASITCL  179 (725)
Q Consensus       107 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p~---~l~~L~~L~l~~~~~l---~~~~~~~  179 (725)
                      +++|++|+++++ .+....    +..+..+++|++|++++| .+++ .+|.   .+++|++|++++|...   ...++.+
T Consensus       103 l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  176 (606)
T 3vq2_A          103 LTSLENLVAVET-KLASLE----SFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL  176 (606)
T ss_dssp             CTTCCEEECTTS-CCCCSS----SSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred             cccCCEEEccCC-cccccc----ccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence            899999999996 455443    355789999999999998 4542 4554   4689999999998633   2334444


Q ss_pred             Ccc----cEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhc
Q 048826          180 PAL----CKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDI  255 (725)
Q Consensus       180 ~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  255 (725)
                      ++|    ..|++++|....+....                         ....+|+.|.+.++....   ...+..+..+
T Consensus       177 ~~L~~~l~~L~l~~n~l~~~~~~~-------------------------~~~~~L~~L~L~~n~~~~---~~~~~~~~~l  228 (606)
T 3vq2_A          177 RENPQVNLSLDMSLNPIDFIQDQA-------------------------FQGIKLHELTLRGNFNSS---NIMKTCLQNL  228 (606)
T ss_dssp             HHCTTCCCEEECTTCCCCEECTTT-------------------------TTTCEEEEEEEESCCSCH---HHHHHHHHTT
T ss_pred             hccccccceeeccCCCcceeCccc-------------------------ccCceeeeeeccCCccch---hHHHHHhccc
Confidence            444    48999999866544332                         012256666666554322   2445567889


Q ss_pred             CCCcEEEEccC-----CCcccchhhhhhHHHhhhhhccCCccEEEE-ecccCccccccccCCCCCCcEEEeecCCCcccc
Q 048826          256 CSLKRLTIDSC-----PKLQSLVAEEEKDQQQQLCELSCRLEYLRL-RYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSF  329 (725)
Q Consensus       256 ~~L~~L~l~~~-----~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~  329 (725)
                      +.|+.+++...     ..+..+...    .+..+..  -.++.+++ ..+...+.+|. +..+++|+.|++++|. ++.+
T Consensus       229 ~~L~~l~l~~~~~~~~~~l~~~~~~----~~~~l~~--l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~-~~~l  300 (606)
T 3vq2_A          229 AGLHVHRLILGEFKDERNLEIFEPS----IMEGLCD--VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVS-IKYL  300 (606)
T ss_dssp             TTCEEEEEEEECCTTSCCCSCCCGG----GGTTGGG--SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCC-CCCC
T ss_pred             cccccccccccccccCCcccccChH----Hhhhhhh--ccHhheeccccccccccccc-cccCCCCCEEEecCcc-chhh
Confidence            99999887542     112222221    1222222  25778888 45555556665 8899999999999986 5667


Q ss_pred             CCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCcccccccccccc
Q 048826          330 PEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQS  409 (725)
Q Consensus       330 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  409 (725)
                      +.+..+++|++|++++|.. +.+|..    .+++|++|++.+|.....+ .....++|+.|+++++.             
T Consensus       301 ~~l~~~~~L~~L~l~~n~l-~~lp~~----~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-------------  361 (606)
T 3vq2_A          301 EDVPKHFKWQSLSIIRCQL-KQFPTL----DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-------------  361 (606)
T ss_dssp             CCCCTTCCCSEEEEESCCC-SSCCCC----CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-------------
T ss_pred             hhccccccCCEEEcccccC-cccccC----CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-------------
Confidence            7677788999999999985 666632    5588888888888544433 22233445555544432             


Q ss_pred             CCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCC
Q 048826          410 SSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCE  489 (725)
Q Consensus       410 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~  489 (725)
                                           ++. ..  ..+..     +..+ ++|++|++++|...+ ++..+..+++|+.|++++|.
T Consensus       362 ---------------------l~~-~~--~~~~~-----~~~~-~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          362 ---------------------LSF-SG--CCSYS-----DLGT-NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             ---------------------EEE-EE--ECCHH-----HHCC-SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE
T ss_pred             ---------------------cCC-Cc--chhhh-----hccC-CcccEeECCCCcccc-chhhccCCCCCCeeECCCCc
Confidence                                 111 00  00010     0111 358888888876544 44667788888888888865


Q ss_pred             Cccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcc-ccccccCCCCCcceeecCCCCCCCCcc
Q 048826          490 NLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLE-ALPKGLHNLTSLQQLTIGKGGELPSLE  567 (725)
Q Consensus       490 ~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~  567 (725)
                      .....| ..+..+++|++|++++|......|..+..+++|++|++++|.... .+|..+..+++|++|++++|......+
T Consensus       411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  490 (606)
T 3vq2_A          411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW  490 (606)
T ss_dssp             EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence            544444 467778888888888877777777777788888888888887555 367778888888888888884322211


Q ss_pred             c-CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          568 E-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       568 ~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      . ...+++|++|++++|+... .   .+..+..+++|+.|++++
T Consensus       491 ~~~~~l~~L~~L~Ls~N~l~~-~---~~~~~~~l~~L~~L~l~~  530 (606)
T 3vq2_A          491 GVFDTLHRLQLLNMSHNNLLF-L---DSSHYNQLYSLSTLDCSF  530 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCSC-E---EGGGTTTCTTCCEEECTT
T ss_pred             hhhcccccCCEEECCCCcCCC-c---CHHHccCCCcCCEEECCC
Confidence            1 2334555555555554321 0   012344445555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.3e-31  Score=306.67  Aligned_cols=125  Identities=17%  Similarity=0.144  Sum_probs=79.3

Q ss_pred             eEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCcc
Q 048826           34 QFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLE  111 (725)
Q Consensus        34 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~  111 (725)
                      ..+.++++...+|. +    .++|++|+|++| .++.+++  ++.+++|++|++++|..+..+++..+     ..+++|+
T Consensus         8 ~~dcs~~~L~~vP~-l----p~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f-----~~L~~L~   76 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ-V----LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF-----RNLPNLR   76 (844)
T ss_dssp             EEEESCCCSSCCCS-S----CTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTT-----SSCTTCC
T ss_pred             EEEccCCCCCCCCC-C----CCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHh-----cCCCCCC
Confidence            45556666677775 2    467888888887 5666543  78888888888888766666654433     2377777


Q ss_pred             eeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCCC
Q 048826          112 TLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCK  191 (725)
Q Consensus       112 ~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~  191 (725)
                      +|+++++ ++....    +..+..+++|++|++++| .+++.+|..                ..+..+++|++|++++|.
T Consensus        77 ~L~Ls~N-~l~~~~----p~~~~~l~~L~~L~Ls~n-~l~~~~~~~----------------~~~~~L~~L~~L~Ls~N~  134 (844)
T 3j0a_A           77 ILDLGSS-KIYFLH----PDAFQGLFHLFELRLYFC-GLSDAVLKD----------------GYFRNLKALTRLDLSKNQ  134 (844)
T ss_dssp             EEECTTC-CCCEEC----TTSSCSCSSCCCEECTTC-CCSSCCSTT----------------CCCSSCSSCCEEEEESCC
T ss_pred             EEECCCC-cCcccC----HhHccCCcccCEeeCcCC-CCCcccccC----------------ccccccCCCCEEECCCCc
Confidence            7777774 444443    456677788888888777 444333321                124555666666666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2e-31  Score=297.20  Aligned_cols=192  Identities=18%  Similarity=0.201  Sum_probs=142.5

Q ss_pred             CCccEEEEecccchhhhhhhh-cCCCCccEEEecCCCCccccc---ccccCCCcccEEEeccCCCccccC---CCCcCcC
Q 048826          454 PSLKSLSVYGCSKLESIAERL-DNNTSLEYINISNCENLKILP---SGLHNLRQLQEITIQRCGNLESFP---EGGLLCA  526 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~  526 (725)
                      ++|+.|++++|... .+|..+ ..+++|++|++++|.....+|   ..+..+++|++|++++|.. +.++   ..+..++
T Consensus       310 ~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~  387 (549)
T 2z81_A          310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLK  387 (549)
T ss_dssp             TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCT
T ss_pred             ccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhhcCC
Confidence            46999999998765 455544 578999999999977665553   3467889999999999754 3333   3466788


Q ss_pred             cCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEE
Q 048826          527 KLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRL  606 (725)
Q Consensus       527 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L  606 (725)
                      +|++|++++|. ++.+|..+..+++|++|++++|. +..++. ..+++|++|++++|...        .....+++|++|
T Consensus       388 ~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~-~~~~~L~~L~Ls~N~l~--------~~~~~l~~L~~L  456 (549)
T 2z81_A          388 NLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG-IRVVKT-CIPQTLEVLDVSNNNLD--------SFSLFLPRLQEL  456 (549)
T ss_dssp             TCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC-CSCCCT-TSCTTCSEEECCSSCCS--------CCCCCCTTCCEE
T ss_pred             CCCEEECCCCC-CccCChhhcccccccEEECCCCC-cccccc-hhcCCceEEECCCCChh--------hhcccCChhcEE
Confidence            99999999997 45788888889999999999984 444433 23478999999998643        224578889999


Q ss_pred             EeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccc-cccccCCcCCCeEeccCCCC
Q 048826          607 TIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERL-SSSIVDLQNLTSLYLLDCPK  671 (725)
Q Consensus       607 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~  671 (725)
                      ++++|  .+..+|...          .+++|+.|++++|+ ++.+ +..+..+++|+.|++++|+-
T Consensus       457 ~Ls~N--~l~~ip~~~----------~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          457 YISRN--KLKTLPDAS----------LFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             ECCSS--CCSSCCCGG----------GCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             ECCCC--ccCcCCCcc----------cCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCCc
Confidence            99884  455677532          57889999999864 4444 44577888899999988763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.98  E-value=3e-30  Score=300.97  Aligned_cols=500  Identities=13%  Similarity=0.052  Sum_probs=336.2

Q ss_pred             CCCCcceEEEeccCCCCC-CCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCC
Q 048826           28 PHKNLKQFCISGYGGTKF-PTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSS  104 (725)
Q Consensus        28 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~  104 (725)
                      -++++++|+|+++.+..+ |..+..  +++|++|++++|.....+++  ++.+++|++|++++|. +..+++..+     
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~--l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~-----   93 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPF--LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAF-----   93 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSS--CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSS-----
T ss_pred             CCCCcCEEECCCCcCCccChhHCcc--cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHc-----
Confidence            458999999999998775 455544  99999999999977778844  9999999999999998 777655443     


Q ss_pred             CCCCCcceeeecccccccccccCCCCCC--CCCCCCccEEEeccCcCcccccC----CCCCcceeeeeccChhh---hhh
Q 048826          105 TPFPCLETLRFEDMEEWEDWIPHGSSQG--VEGFPKLRELHVIRCSKLQGTFP----EHLPALEMLAIEKCEEL---LAS  175 (725)
Q Consensus       105 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~l---~~~  175 (725)
                      ..+++|++|+++++ .+.+..    +..  +..+++|++|++++| .+++..+    ..+++|++|++++|...   ...
T Consensus        94 ~~l~~L~~L~Ls~n-~l~~~~----~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~  167 (844)
T 3j0a_A           94 QGLFHLFELRLYFC-GLSDAV----LKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE  167 (844)
T ss_dssp             CSCSSCCCEECTTC-CCSSCC----STTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred             cCCcccCEeeCcCC-CCCccc----ccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence            34899999999996 454422    222  688999999999998 5543333    34789999999987632   234


Q ss_pred             ccCC--CcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCC--CccceeeeccccchhHHhhhhhhh
Q 048826          176 ITCL--PALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRL--PKLEELEINDMKEQTYIWKSHNEL  251 (725)
Q Consensus       176 ~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~L~~L~l~~~~~~~~~~~~~~~~  251 (725)
                      +..+  ++|+.|++++|.........          .          +..+..+  ..|+.|.+.++.-...   .+..+
T Consensus       168 l~~l~~~~L~~L~L~~n~l~~~~~~~----------~----------~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~  224 (844)
T 3j0a_A          168 LEPLQGKTLSFFSLAANSLYSRVSVD----------W----------GKCMNPFRNMVLEILDVSGNGWTVD---ITGNF  224 (844)
T ss_dssp             GHHHHHCSSCCCEECCSBSCCCCCCC----------C----------CSSSCTTTTCCBSEEBCSSCCSSTT---TTSGG
T ss_pred             cccccCCccceEECCCCccccccccc----------h----------hhcCCccccCceeEEecCCCcCchh---HHHHH
Confidence            4444  78999999988644311110          0          0000011  1366666655432111   22222


Q ss_pred             hh--hcCCCcEEEEccCC--------CcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEee
Q 048826          252 LQ--DICSLKRLTIDSCP--------KLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIY  321 (725)
Q Consensus       252 ~~--~~~~L~~L~l~~~~--------~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~  321 (725)
                      ..  ...+++.|.+..+.        .+......    .+..+  .+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus       225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~----~f~~l--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  298 (844)
T 3j0a_A          225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN----TFAGL--ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA  298 (844)
T ss_dssp             GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT----TTTTT--TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred             HhhcCcccccceecccccccccccccccCCCChh----hhhcc--ccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence            22  22567777776321        11111111    11111  12689999999988877777888899999999999


Q ss_pred             cCCCccccC-CCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCccccccc--ccccccceEEeecCCCc
Q 048826          322 KCSSLVSFP-EVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGV--QLPRSLKRLVILNCDNI  398 (725)
Q Consensus       322 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l  398 (725)
                      +|......+ .+..+++|++|++++|......+..+  ..+++|+.|++++|. +..++..  ...++|+.|+++++.- 
T Consensus       299 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l-  374 (844)
T 3j0a_A          299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNAL-  374 (844)
T ss_dssp             SCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCS-
T ss_pred             CCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCC-
Confidence            986433323 34558899999999987444434443  345889999999884 4544432  4467888999888642 


Q ss_pred             cccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhh-hhhhhcCC
Q 048826          399 RTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLES-IAERLDNN  477 (725)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l  477 (725)
                      ..+.             ..++|++++++++ +++. +     |..         ..+++.|++++|...+. .+..+..+
T Consensus       375 ~~i~-------------~~~~L~~L~l~~N-~l~~-l-----~~~---------~~~l~~L~ls~N~l~~l~~~~~~~~l  425 (844)
T 3j0a_A          375 TTIH-------------FIPSIPDIFLSGN-KLVT-L-----PKI---------NLTANLIHLSENRLENLDILYFLLRV  425 (844)
T ss_dssp             CCCS-------------SCCSCSEEEEESC-CCCC-C-----CCC---------CTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred             Cccc-------------CCCCcchhccCCC-Cccc-c-----ccc---------ccccceeecccCccccCchhhhhhcC
Confidence            2222             1345889998874 3333 1     111         13589999999877653 23446689


Q ss_pred             CCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCc-----cccCCCCcCcCcCceeeeccccCccccccccCCCCC
Q 048826          478 TSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNL-----ESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTS  551 (725)
Q Consensus       478 ~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  551 (725)
                      ++|+.|++++|......+ ..+..+++|+.|++++|...     ...+..+..+++|+.|++++|......+..+..+++
T Consensus       426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  505 (844)
T 3j0a_A          426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA  505 (844)
T ss_dssp             TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred             CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence            999999999965443222 23456899999999997654     223445778899999999999866666667899999


Q ss_pred             cceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826          552 LQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC  611 (725)
Q Consensus       552 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~  611 (725)
                      |++|++++| .+..++.....++|+.|++++|....       .....+.+|+.|+++++
T Consensus       506 L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~-------~~~~~~~~L~~l~l~~N  557 (844)
T 3j0a_A          506 LRGLSLNSN-RLTVLSHNDLPANLEILDISRNQLLA-------PNPDVFVSLSVLDITHN  557 (844)
T ss_dssp             CSEEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCC-------CCSCCCSSCCEEEEEEE
T ss_pred             hheeECCCC-CCCccChhhhhccccEEECCCCcCCC-------CChhHhCCcCEEEecCC
Confidence            999999999 55556555555899999999996542       22234568889999884

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.8e-29  Score=282.94  Aligned_cols=201  Identities=17%  Similarity=0.096  Sum_probs=128.1

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccc--cccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKIL--PSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      +|+.|++++|......+.  ..+++|+.|++++|......  +..+..+++|++|++++|.. ..++..+..+++|++|+
T Consensus       326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~  402 (570)
T 2z63_A          326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLD  402 (570)
T ss_dssp             SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEEEETCTTCCEEE
T ss_pred             ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc-ccccccccccCCCCEEE
Confidence            478888887766554433  56778888888775433321  45566778888888887653 33444466777888888


Q ss_pred             eccccCccccc-cccCCCCCcceeecCCCCCCCCcc-cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          533 ILDCKRLEALP-KGLHNLTSLQQLTIGKGGELPSLE-EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       533 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      +++|......+ ..+..+++|++|++++|......+ ....+++|++|++++|......+   +..+..+++|+.|++++
T Consensus       403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---p~~~~~l~~L~~L~l~~  479 (570)
T 2z63_A          403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQ  479 (570)
T ss_dssp             CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTT
T ss_pred             ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc---hhhhhcccCCCEEECCC
Confidence            88877554444 356778888888888874333222 23345777777777775432111   24567778888888887


Q ss_pred             CCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc-ccccCCcCCCeEeccCCCCC
Q 048826          611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS-SSIVDLQNLTSLYLLDCPKL  672 (725)
Q Consensus       611 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~c~~l  672 (725)
                      | ......|..++         .+++|+.|++++|. ++.++ ..+..+++|+.|++++|+..
T Consensus       480 n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          480 C-QLEQLSPTAFN---------SLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             S-CCCEECTTTTT---------TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             C-ccccCChhhhh---------cccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCccc
Confidence            4 22233344432         56788888888854 44444 44667788888888886543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=7.4e-30  Score=286.02  Aligned_cols=477  Identities=16%  Similarity=0.122  Sum_probs=279.0

Q ss_pred             CCcceEEEeccCCCCCCC-CcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCC
Q 048826           30 KNLKQFCISGYGGTKFPT-WLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTP  106 (725)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  106 (725)
                      +++++|+++++....++. .+..  +++|++|++++| .++.+++  ++.+++|++|++++|. +..+++..++     .
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-----~   98 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS-----G   98 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTT--CSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTT-----T
T ss_pred             ccccEEEccCCccCccChhHhhC--CCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhc-----C
Confidence            678888888888776643 3433  788888888888 6777754  7888888888888887 7777654433     3


Q ss_pred             CCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCccc-ccCC---CCCcceeeeeccChhh---hhhccCC
Q 048826          107 FPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQG-TFPE---HLPALEMLAIEKCEEL---LASITCL  179 (725)
Q Consensus       107 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p~---~l~~L~~L~l~~~~~l---~~~~~~~  179 (725)
                      +++|++|+++++ +++...    ...+..+++|++|++++| .+++ .+|.   .+++|++|++++|...   ...++.+
T Consensus        99 l~~L~~L~L~~n-~l~~l~----~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  172 (570)
T 2z63_A           99 LSSLQKLVAVET-NLASLE----NFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL  172 (570)
T ss_dssp             CTTCCEEECTTS-CCCCST----TCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred             cccccccccccc-ccccCC----CccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence            788888888885 455442    234678888888888887 4432 2454   3567888888877532   2344455


Q ss_pred             Ccc----cEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhc
Q 048826          180 PAL----CKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDI  255 (725)
Q Consensus       180 ~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  255 (725)
                      ++|    +.+++++|.........                       +  ...+|+.|.+.+.....   ......+..+
T Consensus       173 ~~L~~~~~~L~l~~n~l~~~~~~~-----------------------~--~~~~L~~L~l~~n~~~~---~~~~~~~~~l  224 (570)
T 2z63_A          173 HQMPLLNLSLDLSLNPMNFIQPGA-----------------------F--KEIRLHKLTLRNNFDSL---NVMKTCIQGL  224 (570)
T ss_dssp             HTCTTCCCEEECTTCCCCEECTTT-----------------------T--TTCEEEEEEEESCCSCT---THHHHHHHTT
T ss_pred             hccchhhhhcccCCCCceecCHHH-----------------------h--ccCcceeEecccccccc---cchhhhhcCc
Confidence            555    67777777655433221                       0  11245666555432111   1223445667


Q ss_pred             CCCcEEEEccC-----CCcccchhhhhhHHHhhhhhccCCccEEEEecc-cCccccccccCCCCCCcEEEeecCCCcccc
Q 048826          256 CSLKRLTIDSC-----PKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYC-KGLVKLPQSSLSLSSLREIEIYKCSSLVSF  329 (725)
Q Consensus       256 ~~L~~L~l~~~-----~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~  329 (725)
                      +.++.+.+...     ..+..+....    +..+..  -.++.+++.++ ...+..+..+..+++|++|++++|. ++.+
T Consensus       225 ~~l~~~~l~~~~~~~~~~l~~~~~~~----~~~l~~--l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l  297 (570)
T 2z63_A          225 AGLEVHRLVLGEFRNEGNLEKFDKSA----LEGLCN--LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERV  297 (570)
T ss_dssp             TTCEEEEEEEEECCCCSSCEECCTTT----TGGGGG--SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSC
T ss_pred             cccceeeeccccccCchhhhhcchhh----hccccc--cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhh
Confidence            77776655421     1222332221    222211  24677778777 4455677778888888999888875 4445


Q ss_pred             CC-CCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccc
Q 048826          330 PE-VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQ  408 (725)
Q Consensus       330 ~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  408 (725)
                      +. ...+ +|++|++++|.. ..++.    ..+++|+.|++.+|.....++. ..+++|+.|++.++......       
T Consensus       298 ~~~~~~~-~L~~L~l~~n~~-~~l~~----~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~-------  363 (570)
T 2z63_A          298 KDFSYNF-GWQHLELVNCKF-GQFPT----LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKG-------  363 (570)
T ss_dssp             CBCCSCC-CCSEEEEESCBC-SSCCB----CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEE-------
T ss_pred             hhhhccC-CccEEeeccCcc-cccCc----ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccc-------
Confidence            43 3335 888888888763 34443    2447788888877753333222 33445555555543211100       


Q ss_pred             cCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCC
Q 048826          409 SSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNC  488 (725)
Q Consensus       409 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~  488 (725)
                                                    ..+..     +..+ ++|++|++++|...+..+. +..+++|+.|++++|
T Consensus       364 ------------------------------~~~~~-----~~~~-~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n  406 (570)
T 2z63_A          364 ------------------------------CCSQS-----DFGT-TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS  406 (570)
T ss_dssp             ------------------------------EEEHH-----HHTC-SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred             ------------------------------ccccc-----cccc-CccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence                                          00000     0001 2466666666655443333 666667777777665


Q ss_pred             CCccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCc-cccccccCCCCCcceeecCCCCCCCCc
Q 048826          489 ENLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRL-EALPKGLHNLTSLQQLTIGKGGELPSL  566 (725)
Q Consensus       489 ~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~  566 (725)
                      ......+ ..+..+++|++|++++|......+..+..+++|++|++++|... ..+|..+..+++|++|++++|......
T Consensus       407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~  486 (570)
T 2z63_A          407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS  486 (570)
T ss_dssp             EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCC
Confidence            4333322 24556667777777766655555666666667777777776644 346666666777777777766322221


Q ss_pred             c-cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826          567 E-EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC  611 (725)
Q Consensus       567 ~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~  611 (725)
                      + ....+++|++|++++|....  ++  +..+..+++|+.|++++|
T Consensus       487 ~~~~~~l~~L~~L~l~~n~l~~--~~--~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          487 PTAFNSLSSLQVLNMASNQLKS--VP--DGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSC--CC--TTTTTTCTTCCEEECCSS
T ss_pred             hhhhhcccCCCEEeCCCCcCCC--CC--HHHhhcccCCcEEEecCC
Confidence            2 23344667777777764321  11  134566777777777773

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=7.1e-29  Score=276.59  Aligned_cols=174  Identities=19%  Similarity=0.237  Sum_probs=102.9

Q ss_pred             CccEEEEecccchhhhhh---hhcCCCCccEEEecCCCCccccc---ccccCCCcccEEEeccCCCccccCCCCcCcCcC
Q 048826          455 SLKSLSVYGCSKLESIAE---RLDNNTSLEYINISNCENLKILP---SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKL  528 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  528 (725)
                      +|+.|++++|.+.+.++.   .++.+++|+.|++++|. ++.++   ..+..+++|++|++++| .+..+|..+..+++|
T Consensus       335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L  412 (549)
T 2z81_A          335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKM  412 (549)
T ss_dssp             TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTC
T ss_pred             cccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccc
Confidence            466666666666655532   25566677777777643 33332   23556677777777765 344666666666677


Q ss_pred             ceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEe
Q 048826          529 TRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI  608 (725)
Q Consensus       529 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l  608 (725)
                      ++|++++|. +..++..+  .++|++|++++|. +..+.  ..+++|++|++++|+..  .++.    ...+++|+.|++
T Consensus       413 ~~L~Ls~N~-l~~l~~~~--~~~L~~L~Ls~N~-l~~~~--~~l~~L~~L~Ls~N~l~--~ip~----~~~l~~L~~L~L  480 (549)
T 2z81_A          413 RFLNLSSTG-IRVVKTCI--PQTLEVLDVSNNN-LDSFS--LFLPRLQELYISRNKLK--TLPD----ASLFPVLLVMKI  480 (549)
T ss_dssp             CEEECTTSC-CSCCCTTS--CTTCSEEECCSSC-CSCCC--CCCTTCCEEECCSSCCS--SCCC----GGGCTTCCEEEC
T ss_pred             cEEECCCCC-cccccchh--cCCceEEECCCCC-hhhhc--ccCChhcEEECCCCccC--cCCC----cccCccCCEEec
Confidence            777777766 33444333  2467777777773 33222  34567777777777543  2221    345778888888


Q ss_pred             ecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc
Q 048826          609 INCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS  652 (725)
Q Consensus       609 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~  652 (725)
                      ++|  .+..+++..        +..+++|+.|++++|+-....+
T Consensus       481 s~N--~l~~~~~~~--------~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          481 SRN--QLKSVPDGI--------FDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CSS--CCCCCCTTG--------GGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCC--ccCCcCHHH--------HhcCcccCEEEecCCCccCCCc
Confidence            873  444444432        1257888888888876544433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.8e-29  Score=276.67  Aligned_cols=445  Identities=17%  Similarity=0.125  Sum_probs=234.8

Q ss_pred             ceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCc
Q 048826           33 KQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCL  110 (725)
Q Consensus        33 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  110 (725)
                      ++|+++++....+|..+    .++|++|++++| .+..+++  ++.+++|++|++++|. ++.+++..++     .+++|
T Consensus         3 ~~l~ls~n~l~~ip~~~----~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-----~l~~L   71 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDL----SQKTTILNISQN-YISELWTSDILSLSKLRILIISHNR-IQYLDISVFK-----FNQEL   71 (520)
T ss_dssp             CEEECTTSCCSSCCCSC----CTTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGT-----TCTTC
T ss_pred             ceEecCCCCcccccccc----cccccEEECCCC-cccccChhhccccccccEEecCCCc-cCCcChHHhh-----cccCC
Confidence            34555666555555433    245666666665 4555542  5566666666666655 4444332222     25566


Q ss_pred             ceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCccc-ccCC---CCCcceeeeeccChhhhhhccCCCcc--cE
Q 048826          111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQG-TFPE---HLPALEMLAIEKCEELLASITCLPAL--CK  184 (725)
Q Consensus       111 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p~---~l~~L~~L~l~~~~~l~~~~~~~~~L--~~  184 (725)
                      ++|+++++ +++..     +..  .+++|++|++++| .+++ .+|.   .+++|++|++++|......+..+++|  +.
T Consensus        72 ~~L~Ls~N-~l~~l-----p~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~  142 (520)
T 2z7x_B           72 EYLDLSHN-KLVKI-----SCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK  142 (520)
T ss_dssp             CEEECCSS-CCCEE-----ECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEE
T ss_pred             CEEecCCC-ceeec-----Ccc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccchhhccccccceeeE
Confidence            66666653 34433     111  4566666666655 3332 2232   24556666666555333344555555  66


Q ss_pred             EEecCCCc--eeE-cccccccCC-CCcccccCCCCcccccCCCCCCCCccceeeeccccchh------HHhhhhhhhhhh
Q 048826          185 LKIYGCKK--VVW-RSSTDHLGS-QNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQT------YIWKSHNELLQD  254 (725)
Q Consensus       185 L~l~~~~~--~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~  254 (725)
                      |++++|..  ... ......+.. ...+....   ...........+.++..|+..++..+.      .+....+ .+..
T Consensus       143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~---n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~  218 (520)
T 2z7x_B          143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPT---NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQT  218 (520)
T ss_dssp             EEEEECTTTTSSCCTTTTTTCCEEEEEEECCS---SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGG
T ss_pred             EEeecccccccccccccccccccceEEEEecc---Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcc
Confidence            66666543  110 000000000 00000000   000011112234455555555555532      1111222 4577


Q ss_pred             cCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcccccccc-----CCCCCCcEEEeecCCCcccc
Q 048826          255 ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSS-----LSLSSLREIEIYKCSSLVSF  329 (725)
Q Consensus       255 ~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~-----~~l~~L~~L~L~~~~~~~~~  329 (725)
                      +++|++|+++++. +.......   .....  ..++|++|++++|.+.+.+|..+     +.+++|+.+++++|..  .+
T Consensus       219 l~~L~~L~l~~~~-l~~~~~~~---~~~~~--~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~  290 (520)
T 2z7x_B          219 NPKLSNLTLNNIE-TTWNSFIR---ILQLV--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GF  290 (520)
T ss_dssp             CTTCCEEEEEEEE-EEHHHHHH---HHHHH--HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CS
T ss_pred             ccchhhccccccc-cCHHHHHH---HHHHh--hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ec
Confidence            7888888888753 22211110   01110  01578888888888766777776     7777777777777653  33


Q ss_pred             CCCC--CC---CCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccc
Q 048826          330 PEVA--LP---SKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTME  404 (725)
Q Consensus       330 ~~~~--~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  404 (725)
                      +...  .+   .+|+.|++++|.... .+.   ...+++|++|++++|.                               
T Consensus       291 p~~~~~~~~~~~~L~~L~l~~n~l~~-~~~---~~~l~~L~~L~Ls~n~-------------------------------  335 (520)
T 2z7x_B          291 PQSYIYEIFSNMNIKNFTVSGTRMVH-MLC---PSKISPFLHLDFSNNL-------------------------------  335 (520)
T ss_dssp             CTHHHHHHHHTCCCSEEEEESSCCCC-CCC---CSSCCCCCEEECCSSC-------------------------------
T ss_pred             chhhhhcccccCceeEEEcCCCcccc-ccc---hhhCCcccEEEeECCc-------------------------------
Confidence            2100  01   346666665554211 110   0122333333333331                               


Q ss_pred             cccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchh--hhhhhhcCCCCccE
Q 048826          405 EGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLE--SIAERLDNNTSLEY  482 (725)
Q Consensus       405 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~  482 (725)
                                                +..     ..+..     +..+ ++|+.|++++|.+.+  .+|..+..+++|+.
T Consensus       336 --------------------------l~~-----~~~~~-----~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~  378 (520)
T 2z7x_B          336 --------------------------LTD-----TVFEN-----CGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQ  378 (520)
T ss_dssp             --------------------------CCT-----TTTTT-----CCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred             --------------------------cCh-----hhhhh-----hccC-CCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence                                      110     00000     0111 358888888887765  55677888888888


Q ss_pred             EEecCCCCccccccc-ccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCC
Q 048826          483 INISNCENLKILPSG-LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       483 L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  561 (725)
                      |++++|.....+|.. +..+++|++|++++|...+.+|..+.  ++|+.|++++|. ++.+|..+..+++|++|++++| 
T Consensus       379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-  454 (520)
T 2z7x_B          379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-  454 (520)
T ss_dssp             EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-
T ss_pred             EECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-
Confidence            888886655546654 66788888888888776666655443  588888888887 4477777778888888888888 


Q ss_pred             CCCCccc--CCCcccccceecccchh
Q 048826          562 ELPSLEE--DGLPTNLHSLWIEDNME  585 (725)
Q Consensus       562 ~l~~~~~--~~~~~~L~~L~l~~n~~  585 (725)
                      .+..++.  ...+++|++|++++|+.
T Consensus       455 ~l~~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          455 QLKSVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCCccCHHHhccCCcccEEECcCCCC
Confidence            3444543  33457788888888764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=4.1e-29  Score=281.61  Aligned_cols=103  Identities=13%  Similarity=0.076  Sum_probs=62.3

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccC--------CCcccEEEeccCCCccccCCCCc--C
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHN--------LRQLQEITIQRCGNLESFPEGGL--L  524 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~--~  524 (725)
                      +|+.|++++|.+....+..+..+++|+.|++++|.. ..+|..+..        +++|++|++++|.. ..+|..+.  .
T Consensus       434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~  511 (636)
T 4eco_A          434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATT  511 (636)
T ss_dssp             CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCSSCC-CBCCGGGSTTT
T ss_pred             CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC-CCcCHHHhccccccccccCCccEEECcCCcC-CccChhhhhcc
Confidence            477777777766643334445577777777777543 355544322        22667777766543 35665554  6


Q ss_pred             cCcCceeeeccccCccccccccCCCCCcceeecCCC
Q 048826          525 CAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKG  560 (725)
Q Consensus       525 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  560 (725)
                      +++|+.|++++|.... +|..+..+++|++|++++|
T Consensus       512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred             CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence            6666677766666443 6666666666666666655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.2e-28  Score=270.45  Aligned_cols=452  Identities=13%  Similarity=0.059  Sum_probs=234.7

Q ss_pred             cEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCCCCCC
Q 048826           58 VILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGF  136 (725)
Q Consensus        58 ~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l  136 (725)
                      ++|++++| .++.+|. +.  ++|++|++++|. +..+++..+.     .+++|++|+++++ ++++..    +..+..+
T Consensus         3 ~~l~ls~n-~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~-----~l~~L~~L~Ls~n-~l~~~~----~~~~~~l   68 (520)
T 2z7x_B            3 FLVDRSKN-GLIHVPKDLS--QKTTILNISQNY-ISELWTSDIL-----SLSKLRILIISHN-RIQYLD----ISVFKFN   68 (520)
T ss_dssp             CEEECTTS-CCSSCCCSCC--TTCSEEECCSSC-CCCCCHHHHT-----TCTTCCEEECCSS-CCCEEE----GGGGTTC
T ss_pred             ceEecCCC-Cccccccccc--ccccEEECCCCc-ccccChhhcc-----ccccccEEecCCC-ccCCcC----hHHhhcc
Confidence            57889987 7888987 55  899999999987 7777654332     3788888888885 455543    4556778


Q ss_pred             CCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCCCceeEcccccccCCCCcccccCCCCc
Q 048826          137 PKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQ  216 (725)
Q Consensus       137 ~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (725)
                      ++|++|++++| .++ .+|..                    .+++|++|++++|.....                     
T Consensus        69 ~~L~~L~Ls~N-~l~-~lp~~--------------------~l~~L~~L~L~~N~l~~~---------------------  105 (520)
T 2z7x_B           69 QELEYLDLSHN-KLV-KISCH--------------------PTVNLKHLDLSFNAFDAL---------------------  105 (520)
T ss_dssp             TTCCEEECCSS-CCC-EEECC--------------------CCCCCSEEECCSSCCSSC---------------------
T ss_pred             cCCCEEecCCC-cee-ecCcc--------------------ccCCccEEeccCCccccc---------------------
Confidence            88888888877 554 34331                    455666666666542210                     


Q ss_pred             ccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCc--cEE
Q 048826          217 VFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRL--EYL  294 (725)
Q Consensus       217 ~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L--~~L  294 (725)
                                                    ..+..++.+++|++|+++++. ++.       ..+..+    ++|  ++|
T Consensus       106 ------------------------------~~p~~~~~l~~L~~L~L~~n~-l~~-------~~~~~l----~~L~L~~L  143 (520)
T 2z7x_B          106 ------------------------------PICKEFGNMSQLKFLGLSTTH-LEK-------SSVLPI----AHLNISKV  143 (520)
T ss_dssp             ------------------------------CCCGGGGGCTTCCEEEEEESS-CCG-------GGGGGG----TTSCEEEE
T ss_pred             ------------------------------cchhhhccCCcceEEEecCcc-cch-------hhcccc----ccceeeEE
Confidence                                          001233667777777777743 332       113334    555  888


Q ss_pred             EEecccC--ccccccccCCCC-CCcEEEeecCCCccccCCC--CCCCCCceEEeeccC-------cccccccccccCCCC
Q 048826          295 RLRYCKG--LVKLPQSSLSLS-SLREIEIYKCSSLVSFPEV--ALPSKLKKIQFRECD-------ALKLLPEAWMSDTNS  362 (725)
Q Consensus       295 ~L~~~~~--~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~--~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~~  362 (725)
                      ++++|.+  .+..|..+..+. +...+++++|.....++..  ..+++|+.|++++|.       ..+.++ .+  ..++
T Consensus       144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l--~~l~  220 (520)
T 2z7x_B          144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KL--QTNP  220 (520)
T ss_dssp             EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GG--GGCT
T ss_pred             EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hh--cccc
Confidence            8887777  556666666554 2334455555544444322  236667777776654       111122 11  2235


Q ss_pred             cccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccc
Q 048826          363 SLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPA  442 (725)
Q Consensus       363 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~  442 (725)
                      +|+.|++.++......... .++                            ....++|++|+++++. +..     .+|.
T Consensus       221 ~L~~L~l~~~~l~~~~~~~-~~~----------------------------~~~~~~L~~L~l~~n~-l~~-----~~p~  265 (520)
T 2z7x_B          221 KLSNLTLNNIETTWNSFIR-ILQ----------------------------LVWHTTVWYFSISNVK-LQG-----QLDF  265 (520)
T ss_dssp             TCCEEEEEEEEEEHHHHHH-HHH----------------------------HHHTSSCSEEEEEEEE-EES-----CCCC
T ss_pred             chhhccccccccCHHHHHH-HHH----------------------------HhhhCcccEEEeeccc-ccC-----cccc
Confidence            5666666554211100000 000                            0000124444444431 110     0111


Q ss_pred             cccccccCCCCCCccEEEEecccchhhhh-hhhcCC---CCccEEEecCCCCcccccccccCCCcccEEEeccCCCcccc
Q 048826          443 TLESLEVGNLPPSLKSLSVYGCSKLESIA-ERLDNN---TSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESF  518 (725)
Q Consensus       443 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~l---~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~  518 (725)
                      .+.......+ ++|+.+++++|..  .+| ..+..+   ++|+.|++++|.. ...+ ....+++|++|++++|.....+
T Consensus       266 ~~~~~~~~~l-~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~Ls~n~l~~~~  340 (520)
T 2z7x_B          266 RDFDYSGTSL-KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM-VHML-CPSKISPFLHLDFSNNLLTDTV  340 (520)
T ss_dssp             CCCCCCSCCC-CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC-CCCC-CCSSCCCCCEEECCSSCCCTTT
T ss_pred             chhhcccccC-ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc-cccc-chhhCCcccEEEeECCccChhh
Confidence            1000000011 2466666666655  222 222222   4577777776543 2221 1245677777777776655556


Q ss_pred             CCCCcCcCcCceeeeccccCcc--ccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhcc
Q 048826          519 PEGGLLCAKLTRLTILDCKRLE--ALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERG  594 (725)
Q Consensus       519 ~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~  594 (725)
                      |..+..+++|++|++++|....  .+|..+..+++|++|++++|.....++.  ...+++|++|++++|.... ..    
T Consensus       341 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~----  415 (520)
T 2z7x_B          341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD-TI----  415 (520)
T ss_dssp             TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG-GG----
T ss_pred             hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc-ch----
Confidence            6666667777777777776443  3445566677777777777643322332  2234556666666554321 11    


Q ss_pred             cccccc-CCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccccc-ccCCcCCCeEeccCCC
Q 048826          595 RGFHRF-SSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSS-IVDLQNLTSLYLLDCP  670 (725)
Q Consensus       595 ~~~~~l-~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~c~  670 (725)
                        +..+ ++|+.|++++|  .+..+|..+.         .+++|++|++++| .++.+|.. +..+++|+.|++++|+
T Consensus       416 --~~~l~~~L~~L~Ls~N--~l~~ip~~~~---------~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          416 --FRCLPPRIKVLDLHSN--KIKSIPKQVV---------KLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             --GGSCCTTCCEEECCSS--CCCCCCGGGG---------GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             --hhhhcccCCEEECCCC--cccccchhhh---------cCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence              1111 35555555552  2234444331         3455555555553 34445443 4445555555555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=9.8e-29  Score=282.78  Aligned_cols=307  Identities=15%  Similarity=0.137  Sum_probs=174.2

Q ss_pred             hhhcCCCcEEEEccCCCccc--chhhhhhHHHhhhh---hccCCccEEEEecccCcccccc--ccCCCCCCcEEEeecCC
Q 048826          252 LQDICSLKRLTIDSCPKLQS--LVAEEEKDQQQQLC---ELSCRLEYLRLRYCKGLVKLPQ--SSLSLSSLREIEIYKCS  324 (725)
Q Consensus       252 ~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~l~~l~---~~~~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~L~~~~  324 (725)
                      +..+++|+.|++++|..++.  +|..     +..+.   ...++|++|+|++|.+. .+|.  .++++++|+.|++++|.
T Consensus       511 l~~L~~L~~L~Ls~N~~lsg~~iP~~-----i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          511 LYDLPELQSLNIACNRGISAAQLKAD-----WTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             GGGCSSCCEEECTTCTTSCHHHHHHH-----HHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred             HhCCCCCCEEECcCCCCcccccchHH-----HHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC
Confidence            46677777777777653543  4433     22221   11147888888887775 7777  77788888888888776


Q ss_pred             CccccCCCCCCCCCceEEeeccCcccccccccccCCCCc-ccEEEeeccCCccccccc-ccc--cccceEEeecCCCccc
Q 048826          325 SLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSS-LEILSIWVCHSLTYLAGV-QLP--RSLKRLVILNCDNIRT  400 (725)
Q Consensus       325 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~-~~~--~~L~~L~l~~~~~l~~  400 (725)
                       ++.+|.++.+++|+.|++++|... .+|..+.  .+++ |+.|++++|. ++.++.. ...  ++|+.|+++++.....
T Consensus       585 -l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~--~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~  659 (876)
T 4ecn_A          585 -VRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFC--AFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSE  659 (876)
T ss_dssp             -CCBCCCCCTTSEESEEECCSSCCS-CCCTTSC--EECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred             -cccchhhcCCCcceEEECcCCccc-cchHHHh--hccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCc
Confidence             346666666778888888877633 5554432  3366 8888887774 3333321 011  1233444333321110


Q ss_pred             cccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCc
Q 048826          401 LTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSL  480 (725)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L  480 (725)
                      ++                           .+.  .....+.           .++|+.|++++|.+.......+..+++|
T Consensus       660 ip---------------------------~l~--~~l~~~~-----------~~~L~~L~Ls~N~L~~lp~~~~~~l~~L  699 (876)
T 4ecn_A          660 GR---------------------------NIS--CSMDDYK-----------GINASTVTLSYNEIQKFPTELFATGSPI  699 (876)
T ss_dssp             SS---------------------------SCS--SCTTTCC-----------CCCEEEEECCSSCCCSCCHHHHHTTCCC
T ss_pred             cc---------------------------cch--hhhcccc-----------CCCcCEEEccCCcCCccCHHHHccCCCC
Confidence            00                           000  0000000           0257888888877664333334477888


Q ss_pred             cEEEecCCCCcccccccccC--------CCcccEEEeccCCCccccCCCCc--CcCcCceeeeccccCccccccccCCCC
Q 048826          481 EYINISNCENLKILPSGLHN--------LRQLQEITIQRCGNLESFPEGGL--LCAKLTRLTILDCKRLEALPKGLHNLT  550 (725)
Q Consensus       481 ~~L~l~~~~~~~~l~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~  550 (725)
                      +.|++++| .+..+|..+..        +++|+.|++++|. +..+|..+.  .+++|+.|++++|.... +|..+..++
T Consensus       700 ~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~  776 (876)
T 4ecn_A          700 STIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS  776 (876)
T ss_dssp             SEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT
T ss_pred             CEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC
Confidence            88888875 44466654433        2377777777753 346666655  67777777777776443 666667777


Q ss_pred             CcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcc
Q 048826          551 SLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTT  630 (725)
Q Consensus       551 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~  630 (725)
                      +|+.|++++|.                 ++++|.... .   .+..+..+++|+.|++++|  .+..+|..+        
T Consensus       777 ~L~~L~Ls~N~-----------------~ls~N~l~~-~---ip~~l~~L~~L~~L~Ls~N--~L~~Ip~~l--------  825 (876)
T 4ecn_A          777 QLKAFGIRHQR-----------------DAEGNRILR-Q---WPTGITTCPSLIQLQIGSN--DIRKVDEKL--------  825 (876)
T ss_dssp             TCCEEECCCCB-----------------CTTCCBCCC-C---CCTTGGGCSSCCEEECCSS--CCCBCCSCC--------
T ss_pred             CCCEEECCCCC-----------------Ccccccccc-c---ChHHHhcCCCCCEEECCCC--CCCccCHhh--------
Confidence            77777777664                 222232111 0   1134556667777777763  335566543        


Q ss_pred             cCCCCCCcEEEeccCc
Q 048826          631 LPLPASLTSLWISNFP  646 (725)
Q Consensus       631 ~~~~~~L~~L~l~~~~  646 (725)
                         .++|+.|++++|+
T Consensus       826 ---~~~L~~LdLs~N~  838 (876)
T 4ecn_A          826 ---TPQLYILDIADNP  838 (876)
T ss_dssp             ---CSSSCEEECCSCT
T ss_pred             ---cCCCCEEECCCCC
Confidence               2567777777654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=2e-26  Score=261.86  Aligned_cols=523  Identities=16%  Similarity=0.112  Sum_probs=291.9

Q ss_pred             EEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCcce
Q 048826           35 FCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLET  112 (725)
Q Consensus        35 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~  112 (725)
                      .+-++.+...+|..+.    +++++|+|++| .++.+|+  |+.+++|++|+|++|. ++.|++..+.     .+++|++
T Consensus        36 ~~c~~~~l~~vP~~lp----~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~-----~L~~L~~  104 (635)
T 4g8a_A           36 YQCMELNFYKIPDNLP----FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQ-----SLSHLST  104 (635)
T ss_dssp             EECTTSCCSSCCSSSC----TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTT-----TCTTCCE
T ss_pred             EECCCCCcCccCCCCC----cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhc-----CCCCCCE
Confidence            3444445667776553    47899999997 7888875  8899999999999886 8888776443     3788888


Q ss_pred             eeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCCCc
Q 048826          113 LRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKK  192 (725)
Q Consensus       113 L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~  192 (725)
                      |+++++ +++...    +..+..+++|++|++++| .++ .+|.                 ..++.+++|++|++++|..
T Consensus       105 L~Ls~N-~l~~l~----~~~f~~L~~L~~L~Ls~N-~l~-~l~~-----------------~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          105 LILTGN-PIQSLA----LGAFSGLSSLQKLVAVET-NLA-SLEN-----------------FPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             EECTTC-CCCEEC----GGGGTTCTTCCEEECTTS-CCC-CSTT-----------------CCCTTCTTCCEEECCSSCC
T ss_pred             EEccCC-cCCCCC----HHHhcCCCCCCEEECCCC-cCC-CCCh-----------------hhhhcCcccCeeccccCcc
Confidence            888885 566552    334577888888888887 554 3332                 2345555566666655542


Q ss_pred             eeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccc
Q 048826          193 VVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSL  272 (725)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  272 (725)
                      ....                                                   .+..+..+++|++|+++++ .++.+
T Consensus       161 ~~~~---------------------------------------------------~~~~~~~l~~L~~L~L~~N-~l~~~  188 (635)
T 4g8a_A          161 QSFK---------------------------------------------------LPEYFSNLTNLEHLDLSSN-KIQSI  188 (635)
T ss_dssp             CCCC---------------------------------------------------CCGGGGGCTTCCEEECCSS-CCCEE
T ss_pred             ccCC---------------------------------------------------CchhhccchhhhhhcccCc-ccccc
Confidence            2100                                                   0112344555666666553 34444


Q ss_pred             hhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccC--CCCCCCCCceEEeeccCc--
Q 048826          273 VAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFP--EVALPSKLKKIQFRECDA--  348 (725)
Q Consensus       273 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~--  348 (725)
                      ++..    +..+......+..++++.|.+. .++........++.+++.++.......  .+..+..++...+.....  
T Consensus       189 ~~~~----l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  263 (635)
T 4g8a_A          189 YCTD----LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  263 (635)
T ss_dssp             CGGG----GHHHHTCTTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             cccc----ccchhhhhhhhhhhhcccCccc-ccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence            3322    3333333334445555555442 333333333344555555543211111  011133333333321110  


Q ss_pred             cccccccc--ccCCCCcccEEEeeccCCcccc----cccccccccceEEeecCCCccccccccccccCCCcccccCCCCe
Q 048826          349 LKLLPEAW--MSDTNSSLEILSIWVCHSLTYL----AGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEH  422 (725)
Q Consensus       349 ~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~  422 (725)
                      ...+....  .......+....+..+......    .......+++.+.+.++........           .....++.
T Consensus       264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-----------~~~~~L~~  332 (635)
T 4g8a_A          264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF-----------SYNFGWQH  332 (635)
T ss_dssp             SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG-----------GSCCCCSE
T ss_pred             ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccccc-----------ccchhhhh
Confidence            00000000  0001122222222222111100    1112334555555554432211110           11124777


Q ss_pred             EEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcc--cccccccC
Q 048826          423 LHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLK--ILPSGLHN  500 (725)
Q Consensus       423 L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~~~~  500 (725)
                      |++.++. +.. +....+             +.|+.+.+.++.....  .....+++|+.+++++|....  ..+.....
T Consensus       333 L~l~~~~-~~~-~~~~~l-------------~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~  395 (635)
T 4g8a_A          333 LELVNCK-FGQ-FPTLKL-------------KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG  395 (635)
T ss_dssp             EEEESCE-ESS-CCCCBC-------------TTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred             hhccccc-ccC-cCcccc-------------hhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhh
Confidence            7777642 111 111111             3478888887754432  234567888888888865432  23444556


Q ss_pred             CCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccc-cccCCCCCcceeecCCCCCCCCcc-cCCCcccccce
Q 048826          501 LRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALP-KGLHNLTSLQQLTIGKGGELPSLE-EDGLPTNLHSL  578 (725)
Q Consensus       501 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L  578 (725)
                      +.+|+.+++..+.. ..++..+..+++|+.+++.++......+ ..+..+++++.++++.|......+ ....+++|++|
T Consensus       396 ~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L  474 (635)
T 4g8a_A          396 TISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  474 (635)
T ss_dssp             CSCCCEEECCSCSE-EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             hhhhhhhhcccccc-ccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence            77888888887543 4455566778888888888877554443 345778888888888884322222 23445888888


Q ss_pred             ecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc-ccccC
Q 048826          579 WIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS-SSIVD  657 (725)
Q Consensus       579 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~  657 (725)
                      ++++|.......   +..+..+++|+.|++++|  .+..+++..        +..+++|++|++++| .++.++ ..+..
T Consensus       475 ~Ls~N~~~~~~~---~~~~~~l~~L~~L~Ls~N--~L~~l~~~~--------f~~l~~L~~L~Ls~N-~l~~l~~~~~~~  540 (635)
T 4g8a_A          475 KMAGNSFQENFL---PDIFTELRNLTFLDLSQC--QLEQLSPTA--------FNSLSSLQVLNMSHN-NFFSLDTFPYKC  540 (635)
T ss_dssp             ECTTCEEGGGEE---CSCCTTCTTCCEEECTTS--CCCEECTTT--------TTTCTTCCEEECTTS-CCCBCCCGGGTT
T ss_pred             hhhhcccccccC---chhhhhccccCEEECCCC--ccCCcChHH--------HcCCCCCCEEECCCC-cCCCCChhHHhC
Confidence            888886543221   246778889999999884  444443322        236789999999985 466554 45678


Q ss_pred             CcCCCeEeccCCCCCcccCCCCC---cccccEEEecCCc
Q 048826          658 LQNLTSLYLLDCPKLRYFPEKGL---PSSLLQLHIYRCP  693 (725)
Q Consensus       658 ~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~c~  693 (725)
                      +++|+.|++++| +++.+++..+   +++|++|+++++|
T Consensus       541 l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          541 LNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             CTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             CCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            899999999985 5666655443   4689999997654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=8.4e-28  Score=270.91  Aligned_cols=343  Identities=15%  Similarity=0.169  Sum_probs=201.1

Q ss_pred             cccccCCCCCCcEEEeecCCCccc-----------------cC-CCC--CCCCCceEEeeccCcccccccccccCCCCcc
Q 048826          305 LPQSSLSLSSLREIEIYKCSSLVS-----------------FP-EVA--LPSKLKKIQFRECDALKLLPEAWMSDTNSSL  364 (725)
Q Consensus       305 ~~~~~~~l~~L~~L~L~~~~~~~~-----------------~~-~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  364 (725)
                      +|..++++++|++|++++|.....                 +| .++  .+++|++|++++|.....+|..+.  .+++|
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L  275 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK--ALPEM  275 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT--TCSSC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh--cCCCC
Confidence            555555555555555555543221                 33 233  355555555555554445554432  23555


Q ss_pred             cEEEeeccCCcc--ccccc-c------cccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCcc-cc
Q 048826          365 EILSIWVCHSLT--YLAGV-Q------LPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLT-RI  434 (725)
Q Consensus       365 ~~L~l~~~~~l~--~~~~~-~------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l  434 (725)
                      ++|++++|..++  .++.. .      ..++|+.|++.++.-. .++....+       ...++|++|+++++. +. . 
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-------~~l~~L~~L~L~~N~-l~g~-  345 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-------QKMKKLGMLECLYNQ-LEGK-  345 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-------TTCTTCCEEECCSCC-CEEE-
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-------ccCCCCCEEeCcCCc-Cccc-
Confidence            555555554222  12221 1      1245666666554322 22210011       111346666666532 22 2 


Q ss_pred             ccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCC-ccEEEecCCCCcccccccccCCC--cccEEEecc
Q 048826          435 FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTS-LEYINISNCENLKILPSGLHNLR--QLQEITIQR  511 (725)
Q Consensus       435 ~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~  511 (725)
                      ++  .+..         + ++|+.|++++|.+. .+|..+..+++ |+.|++++|. +..+|..+..++  +|++|++++
T Consensus       346 ip--~~~~---------l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~  411 (636)
T 4eco_A          346 LP--AFGS---------E-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSY  411 (636)
T ss_dssp             CC--CCEE---------E-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCS
T ss_pred             hh--hhCC---------C-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcC
Confidence            22  1111         1 35888888887665 66667777777 8888888754 447777666543  788888888


Q ss_pred             CCCccccCCCCc-------CcCcCceeeeccccCcccccccc-CCCCCcceeecCCCCCCCCcccCCC---------ccc
Q 048826          512 CGNLESFPEGGL-------LCAKLTRLTILDCKRLEALPKGL-HNLTSLQQLTIGKGGELPSLEEDGL---------PTN  574 (725)
Q Consensus       512 ~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~---------~~~  574 (725)
                      |.....+|..+.       .+++|++|++++|... .+|..+ ..+++|++|++++|.. ..++....         +++
T Consensus       412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~  489 (636)
T 4eco_A          412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYL  489 (636)
T ss_dssp             SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGG
T ss_pred             CcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCC-CCcCHHHhccccccccccCC
Confidence            776666666555       6668888888888744 565543 4578888888888743 34443211         127


Q ss_pred             ccceecccchhhHHHHhhcccccc--ccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEec------cCc
Q 048826          575 LHSLWIEDNMEIWKSMIERGRGFH--RFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWIS------NFP  646 (725)
Q Consensus       575 L~~L~l~~n~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~------~~~  646 (725)
                      |++|++++|...  .+   +..+.  .+++|+.|++++|  .+..+|..+.         .+++|+.|+++      +|.
T Consensus       490 L~~L~Ls~N~l~--~l---p~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~---------~l~~L~~L~Ls~N~~ls~N~  553 (636)
T 4eco_A          490 LTSIDLRFNKLT--KL---SDDFRATTLPYLVGIDLSYN--SFSKFPTQPL---------NSSTLKGFGIRNQRDAQGNR  553 (636)
T ss_dssp             CCEEECCSSCCC--BC---CGGGSTTTCTTCCEEECCSS--CCSSCCCGGG---------GCSSCCEEECCSCBCTTCCB
T ss_pred             ccEEECcCCcCC--cc---ChhhhhccCCCcCEEECCCC--CCCCcChhhh---------cCCCCCEEECCCCcccccCc
Confidence            888888888654  12   23343  7788888888873  3344666553         56788888884      444


Q ss_pred             ccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEecCCc
Q 048826          647 NLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCP  693 (725)
Q Consensus       647 ~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~  693 (725)
                      ....+|..+..+++|+.|++++|. ++.+|.. +.++|+.|++++|+
T Consensus       554 l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~  598 (636)
T 4eco_A          554 TLREWPEGITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNP  598 (636)
T ss_dssp             CCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCT
T ss_pred             ccccChHHHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCC
Confidence            566777777778888888888864 4677664 34778888888875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=8.4e-26  Score=256.64  Aligned_cols=500  Identities=15%  Similarity=0.122  Sum_probs=280.1

Q ss_pred             CCcceEEEeccCCCCCCC-CcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCC
Q 048826           30 KNLKQFCISGYGGTKFPT-WLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTP  106 (725)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~  106 (725)
                      +++++|+|++|.+..+|. .+..  +++|++|+|++| .++.+|+  |+.+++|++|+|++|. ++.+++..++.     
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~--l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~-----  122 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG-----  122 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTT-----
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhC--CCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcC-----
Confidence            689999999999998864 4544  899999999998 7898876  8999999999999997 89998765543     


Q ss_pred             CCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCccc-ccC---CCCCcceeeeeccChhh---hhhcc--
Q 048826          107 FPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQG-TFP---EHLPALEMLAIEKCEEL---LASIT--  177 (725)
Q Consensus       107 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p---~~l~~L~~L~l~~~~~l---~~~~~--  177 (725)
                      +++|++|+++++ +++...    +..++.+++|++|+++++ .++. ..|   ..+++|++|++++|...   ...+.  
T Consensus       123 L~~L~~L~Ls~N-~l~~l~----~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L  196 (635)
T 4g8a_A          123 LSSLQKLVAVET-NLASLE----NFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL  196 (635)
T ss_dssp             CTTCCEEECTTS-CCCCST----TCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred             CCCCCEEECCCC-cCCCCC----hhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence            899999999996 566653    345789999999999998 4442 223   23566777777766521   12222  


Q ss_pred             -CCC-cccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhc
Q 048826          178 -CLP-ALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDI  255 (725)
Q Consensus       178 -~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  255 (725)
                       .++ ....++++.+....+....                         .....+..+.+.+...   ........+..+
T Consensus       197 ~~l~~~~~~~~ls~n~l~~i~~~~-------------------------~~~~~~~~l~l~~n~~---~~~~~~~~~~~l  248 (635)
T 4g8a_A          197 HQMPLLNLSLDLSLNPMNFIQPGA-------------------------FKEIRLHKLTLRNNFD---SLNVMKTCIQGL  248 (635)
T ss_dssp             HTCTTCCCEEECTTCCCCEECTTT-------------------------TTTCEEEEEEEESCCS---SHHHHHHHHHTT
T ss_pred             hhhhhhhhhhhcccCcccccCccc-------------------------ccchhhhhhhhhcccc---cccccchhhcCC
Confidence             222 1234555555433322111                         0112223333332211   112334455667


Q ss_pred             CCCcEEEEccCC-----CcccchhhhhhHHHhhhhhccCCccEEEEecccCcc---ccccccCCCCCCcEEEeecCCCcc
Q 048826          256 CSLKRLTIDSCP-----KLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV---KLPQSSLSLSSLREIEIYKCSSLV  327 (725)
Q Consensus       256 ~~L~~L~l~~~~-----~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~---~~~~~~~~l~~L~~L~L~~~~~~~  327 (725)
                      ..++...+....     .+......    .+...    ..+....+..+....   .....+..+.+++.+.+.++. +.
T Consensus       249 ~~l~~~~l~~~~~~~~~~l~~~~~~----~~~~~----~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~  319 (635)
T 4g8a_A          249 AGLEVHRLVLGEFRNEGNLEKFDKS----ALEGL----CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IE  319 (635)
T ss_dssp             TTCEEEEEEEECCTTSCCCSCCCTT----TTGGG----GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EE
T ss_pred             ccccccccccccccccccccccccc----ccccc----cchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cc
Confidence            777766654321     11111111    12222    455555555443321   333445566777777777764 44


Q ss_pred             ccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCcccccccccc
Q 048826          328 SFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGI  407 (725)
Q Consensus       328 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  407 (725)
                      .+.......+|+.|++.++.... ++.    ..+..|+.+.+..+... ........++++.+++.++.......     
T Consensus       320 ~~~~~~~~~~L~~L~l~~~~~~~-~~~----~~l~~L~~l~l~~n~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~-----  388 (635)
T 4g8a_A          320 RVKDFSYNFGWQHLELVNCKFGQ-FPT----LKLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGC-----  388 (635)
T ss_dssp             ECGGGGSCCCCSEEEEESCEESS-CCC----CBCTTCCEEEEESCCSC-CBCCCCBCTTCCEEECCSSCCBEEEE-----
T ss_pred             cccccccchhhhhhhcccccccC-cCc----ccchhhhhcccccccCC-CCcccccccccccchhhccccccccc-----
Confidence            44455556677788777765222 211    12355666666655322 11222223344444444322110000     


Q ss_pred             ccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecC
Q 048826          408 QSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISN  487 (725)
Q Consensus       408 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~  487 (725)
                                                      .+..     ... ..+|+.+++..+.... .+..+..+++|+.+++.+
T Consensus       389 --------------------------------~~~~-----~~~-~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~  429 (635)
T 4g8a_A          389 --------------------------------CSQS-----DFG-TISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH  429 (635)
T ss_dssp             --------------------------------CCHH-----HHS-CSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTT
T ss_pred             --------------------------------cccc-----hhh-hhhhhhhhcccccccc-ccccccccccccchhhhh
Confidence                                            0000     000 0246666666654433 333455667777777766


Q ss_pred             CCCccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcc-ccccccCCCCCcceeecCCCCCCCC
Q 048826          488 CENLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLE-ALPKGLHNLTSLQQLTIGKGGELPS  565 (725)
Q Consensus       488 ~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~  565 (725)
                      ++.....+ ..+..+++++.+++++|......+..+..+++|+.|++++|.... ..|..+..+++|++|++++|. +..
T Consensus       430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~  508 (635)
T 4g8a_A          430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQ  508 (635)
T ss_dssp             SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCC
Confidence            55444332 335566777777777766555556666666777777777776443 345566777777777777773 333


Q ss_pred             ccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCC-CCcccccCcccCCCCCCcEEEe
Q 048826          566 LEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPP-EPEDVRLGTTLPLPASLTSLWI  642 (725)
Q Consensus       566 ~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~~~~~~~~~L~~L~l  642 (725)
                      ++.  ...+++|++|+|++|+...  +.  +..+..+++|+.|++++  +.+..+++ .+..        .+++|+.|++
T Consensus       509 l~~~~f~~l~~L~~L~Ls~N~l~~--l~--~~~~~~l~~L~~L~Ls~--N~l~~~~~~~l~~--------l~~~L~~L~L  574 (635)
T 4g8a_A          509 LSPTAFNSLSSLQVLNMSHNNFFS--LD--TFPYKCLNSLQVLDYSL--NHIMTSKKQELQH--------FPSSLAFLNL  574 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCB--CC--CGGGTTCTTCCEEECTT--SCCCBCCSSCTTC--------CCTTCCEEEC
T ss_pred             cChHHHcCCCCCCEEECCCCcCCC--CC--hhHHhCCCCCCEEECCC--CcCCCCCHHHHHh--------hhCcCCEEEe
Confidence            221  2334566666666664321  11  13455667777777776  33333333 2221        2356777777


Q ss_pred             ccCc
Q 048826          643 SNFP  646 (725)
Q Consensus       643 ~~~~  646 (725)
                      ++|+
T Consensus       575 ~~Np  578 (635)
T 4g8a_A          575 TQND  578 (635)
T ss_dssp             TTCC
T ss_pred             eCCC
Confidence            7754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=1.2e-26  Score=258.76  Aligned_cols=143  Identities=15%  Similarity=0.059  Sum_probs=104.1

Q ss_pred             CCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCC
Q 048826           30 KNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPF  107 (725)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  107 (725)
                      ...++++++++....+|..+    .++|++|++++| .+..+++  ++.+++|++|++++|. ++.+++..++     .+
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~----~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-----~l   99 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDL----PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFL-----FN   99 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTS----CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTT-----TC
T ss_pred             CCCcEEEcCCCCCccCCCCC----CCCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHhC-----CC
Confidence            44488999998888888655    378999999998 6777764  8899999999999886 7777655433     37


Q ss_pred             CCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCccc-ccCC---CCCcceeeeeccChhhhhhccCCCcc-
Q 048826          108 PCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQG-TFPE---HLPALEMLAIEKCEELLASITCLPAL-  182 (725)
Q Consensus       108 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p~---~l~~L~~L~l~~~~~l~~~~~~~~~L-  182 (725)
                      ++|++|+++++ +++..     +..  .+++|++|++++| .+++ .+|.   .+++|++|+++++......+..+++| 
T Consensus       100 ~~L~~L~Ls~N-~l~~l-----p~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~  170 (562)
T 3a79_B          100 QDLEYLDVSHN-RLQNI-----SCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH  170 (562)
T ss_dssp             TTCCEEECTTS-CCCEE-----CSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSC
T ss_pred             CCCCEEECCCC-cCCcc-----Ccc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccCchhhhhhce
Confidence            88999999985 56654     222  6889999999988 4542 2222   46788888888876443445555566 


Q ss_pred             -cEEEecCCCc
Q 048826          183 -CKLKIYGCKK  192 (725)
Q Consensus       183 -~~L~l~~~~~  192 (725)
                       +.|++++|..
T Consensus       171 L~~L~L~~n~l  181 (562)
T 3a79_B          171 LSCILLDLVSY  181 (562)
T ss_dssp             EEEEEEEESSC
T ss_pred             eeEEEeecccc
Confidence             8888888764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=9.8e-27  Score=266.30  Aligned_cols=339  Identities=17%  Similarity=0.181  Sum_probs=193.9

Q ss_pred             HhhhhhccCCccEEEEecccCcc-----------------ccccccC--CCCCCcEEEeecCCCccccCC-CCCCCCCce
Q 048826          281 QQQLCELSCRLEYLRLRYCKGLV-----------------KLPQSSL--SLSSLREIEIYKCSSLVSFPE-VALPSKLKK  340 (725)
Q Consensus       281 l~~l~~~~~~L~~L~L~~~~~~~-----------------~~~~~~~--~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~  340 (725)
                      +..+    ++|++|+|++|.+.+                 .+|..++  ++++|++|+|++|...+.+|. +..+++|+.
T Consensus       444 l~~L----~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          444 IQRL----TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             GGGC----TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             HhcC----CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            5555    899999999999876                 3888887  999999999999987776663 556899999


Q ss_pred             EEeeccCccc--cccccccc-----CCCCcccEEEeeccCCcccccc---cccccccceEEeecCCCccccccccccccC
Q 048826          341 IQFRECDALK--LLPEAWMS-----DTNSSLEILSIWVCHSLTYLAG---VQLPRSLKRLVILNCDNIRTLTMEEGIQSS  410 (725)
Q Consensus       341 L~l~~~~~~~--~~~~~~~~-----~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  410 (725)
                      |++++|..+.  .+|..+..     ..+++|+.|++++|... .++.   ...+++|+.|+++++... .++        
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--------  589 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--------  589 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--------
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--------
Confidence            9999997343  46554332     23468999999988543 5554   244556666666654321 211        


Q ss_pred             CCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCC-ccEEEecCCC
Q 048826          411 SSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTS-LEYINISNCE  489 (725)
Q Consensus       411 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-L~~L~l~~~~  489 (725)
                                                  .         +..+ ++|+.|++++|.+. .+|..+..+++ |+.|++++|.
T Consensus       590 ----------------------------~---------~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          590 ----------------------------A---------FGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             ----------------------------C---------CCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred             ----------------------------h---------hcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence                                        0         0000 23666666665544 45555555665 6666666643


Q ss_pred             CcccccccccCCC--cccEEEeccCCCccccCCC---C--cCcCcCceeeeccccCcccccccc-CCCCCcceeecCCCC
Q 048826          490 NLKILPSGLHNLR--QLQEITIQRCGNLESFPEG---G--LLCAKLTRLTILDCKRLEALPKGL-HNLTSLQQLTIGKGG  561 (725)
Q Consensus       490 ~~~~l~~~~~~l~--~L~~L~l~~~~~~~~~~~~---~--~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~  561 (725)
                       +..+|..+..++  +|+.|++++|.....+|..   .  ..+++|+.|++++|... .+|..+ ..+++|+.|++++|.
T Consensus       631 -L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          631 -LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             -CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC
T ss_pred             -CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc
Confidence             335555544443  2666666665544333321   1  12335666666666533 444433 355666666666652


Q ss_pred             CCCCcccCC---------CcccccceecccchhhHHHHhhcccccc--ccCCCcEEEeecCCCCCccCCCCCcccccCcc
Q 048826          562 ELPSLEEDG---------LPTNLHSLWIEDNMEIWKSMIERGRGFH--RFSSLRRLTIINCDDDMVSFPPEPEDVRLGTT  630 (725)
Q Consensus       562 ~l~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~  630 (725)
                       +..++...         .+++|++|++++|...  .+   +..+.  .+++|+.|++++|  .+..+|..+.       
T Consensus       709 -L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~l---p~~l~~~~l~~L~~L~Ls~N--~L~~lp~~l~-------  773 (876)
T 4ecn_A          709 -MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SL---SDDFRATTLPYLSNMDVSYN--CFSSFPTQPL-------  773 (876)
T ss_dssp             -CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CC---CGGGSTTTCTTCCEEECCSS--CCSSCCCGGG-------
T ss_pred             -CCccChHHhccccccccccCCccEEECCCCCCc--cc---hHHhhhccCCCcCEEEeCCC--CCCccchhhh-------
Confidence             22333211         1125666666666432  11   12333  5666666666662  2333554442       


Q ss_pred             cCCCCCCcEEEecc------CcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEecCCc
Q 048826          631 LPLPASLTSLWISN------FPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCP  693 (725)
Q Consensus       631 ~~~~~~L~~L~l~~------~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~  693 (725)
                        .+++|+.|++++      |.....+|..+..+++|+.|++++|.. +.+|.. +.++|+.|++++|+
T Consensus       774 --~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~  838 (876)
T 4ecn_A          774 --NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNP  838 (876)
T ss_dssp             --GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCT
T ss_pred             --cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCC
Confidence              456666666654      333445555556666666666666433 555554 33566666666665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=8e-27  Score=251.22  Aligned_cols=257  Identities=28%  Similarity=0.304  Sum_probs=149.8

Q ss_pred             hhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC
Q 048826          252 LQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE  331 (725)
Q Consensus       252 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~  331 (725)
                      +..+++|++|+++++ .++.++..            +++|++|++++|.+.+ +| .++.+++|++|++++|. ++.++.
T Consensus       149 ~~~l~~L~~L~l~~N-~l~~lp~~------------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~-l~~l~~  212 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNN-SLKKLPDL------------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNS-LKKLPD  212 (454)
T ss_dssp             CTTCTTCCEEECCSS-CCSCCCCC------------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC-CSSCCC
T ss_pred             cCCCCCCCEEECCCC-cCcccCCC------------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCc-CCcCCC
Confidence            366788888888885 45555432            1588888888887654 55 57888888888888875 444443


Q ss_pred             CCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCC
Q 048826          332 VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSS  411 (725)
Q Consensus       332 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  411 (725)
                        ..++|++|++++|. +..++. +  ..+++|+.|++++|. ++.++.  .+++|+.|++.++. +..++.        
T Consensus       213 --~~~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~l~~N~-l~~l~~--~~~~L~~L~l~~N~-l~~l~~--------  274 (454)
T 1jl5_A          213 --LPLSLESIVAGNNI-LEELPE-L--QNLPFLTTIYADNNL-LKTLPD--LPPSLEALNVRDNY-LTDLPE--------  274 (454)
T ss_dssp             --CCTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSSC-CSSCCS--CCTTCCEEECCSSC-CSCCCC--------
T ss_pred             --CcCcccEEECcCCc-CCcccc-c--CCCCCCCEEECCCCc-CCcccc--cccccCEEECCCCc-ccccCc--------
Confidence              23588888888885 445653 2  355788888888773 344432  34678888887764 222221        


Q ss_pred             CcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCC-CCccEEEecCCCC
Q 048826          412 SRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNN-TSLEYINISNCEN  490 (725)
Q Consensus       412 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~  490 (725)
                          ..++|++|+++++ .++. ++              .+|++|+.|++++|...+     +..+ ++|+.|++++|. 
T Consensus       275 ----~~~~L~~L~ls~N-~l~~-l~--------------~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~-  328 (454)
T 1jl5_A          275 ----LPQSLTFLDVSEN-IFSG-LS--------------ELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNK-  328 (454)
T ss_dssp             ----CCTTCCEEECCSS-CCSE-ES--------------CCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSC-
T ss_pred             ----ccCcCCEEECcCC-ccCc-cc--------------CcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCc-
Confidence                0135888888764 2332 11              122458888888886654     2223 478888888854 


Q ss_pred             cccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcc--ccccccCCCCCcceeecCCCCCCCCccc
Q 048826          491 LKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLE--ALPKGLHNLTSLQQLTIGKGGELPSLEE  568 (725)
Q Consensus       491 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~  568 (725)
                      +..+|..   +++|++|++++|. +..+|.   .+++|++|++++|+...  .+|..+..+      .  .|.....++.
T Consensus       329 l~~lp~~---~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L------~--~n~~~~~i~~  393 (454)
T 1jl5_A          329 LIELPAL---PPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL------R--MNSHLAEVPE  393 (454)
T ss_dssp             CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE------E--CCC-------
T ss_pred             ccccccc---CCcCCEEECCCCc-cccccc---hhhhccEEECCCCCCCcCCCChHHHHhh------h--hccccccccc
Confidence            4456653   5788888888864 456776   46788888888887655  455544332      1  2222222222


Q ss_pred             CCCcccccceecccchh
Q 048826          569 DGLPTNLHSLWIEDNME  585 (725)
Q Consensus       569 ~~~~~~L~~L~l~~n~~  585 (725)
                        .+++|++|++++|+.
T Consensus       394 --~~~~L~~L~ls~N~l  408 (454)
T 1jl5_A          394 --LPQNLKQLHVETNPL  408 (454)
T ss_dssp             -----------------
T ss_pred             --ccCcCCEEECCCCcC
Confidence              246777777777754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=7.4e-26  Score=252.36  Aligned_cols=450  Identities=15%  Similarity=0.099  Sum_probs=220.6

Q ss_pred             CccEEEeccCcCcccccCCCC-CcceeeeeccChhh---hhhccCCCcccEEEecCCCceeEcccccccCCCCcccccCC
Q 048826          138 KLRELHVIRCSKLQGTFPEHL-PALEMLAIEKCEEL---LASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDT  213 (725)
Q Consensus       138 ~L~~L~l~~c~~l~~~~p~~l-~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (725)
                      ..++++++++ .++ .+|..+ ++|++|++++|...   ...+..+++|++|++++|......                 
T Consensus        32 ~~~~l~ls~~-~L~-~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------   92 (562)
T 3a79_B           32 LESMVDYSNR-NLT-HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD-----------------   92 (562)
T ss_dssp             -CCEEECTTS-CCC-SCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEEC-----------------
T ss_pred             CCcEEEcCCC-CCc-cCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCC-----------------
Confidence            3456666666 554 455533 46666666666522   246778888888888887644321                 


Q ss_pred             CCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccE
Q 048826          214 SNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEY  293 (725)
Q Consensus       214 ~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~  293 (725)
                                                         +..+..+++|++|+++++ .++.++..       .+    ++|++
T Consensus        93 -----------------------------------~~~~~~l~~L~~L~Ls~N-~l~~lp~~-------~l----~~L~~  125 (562)
T 3a79_B           93 -----------------------------------FHVFLFNQDLEYLDVSHN-RLQNISCC-------PM----ASLRH  125 (562)
T ss_dssp             -----------------------------------TTTTTTCTTCCEEECTTS-CCCEECSC-------CC----TTCSE
T ss_pred             -----------------------------------HHHhCCCCCCCEEECCCC-cCCccCcc-------cc----ccCCE
Confidence                                               222355677777777774 45565543       22    67777


Q ss_pred             EEEecccCcc-ccccccCCCCCCcEEEeecCCCccccCCCCCCCCC--ceEEeeccCc--ccccccccccCCCCcccEEE
Q 048826          294 LRLRYCKGLV-KLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKL--KKIQFRECDA--LKLLPEAWMSDTNSSLEILS  368 (725)
Q Consensus       294 L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~  368 (725)
                      |++++|.+.+ .+|..++++++|++|++++|.. +. ..+..+++|  +.|++++|..  ....+..+.......+ .++
T Consensus       126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~-~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~  202 (562)
T 3a79_B          126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQ-LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLV  202 (562)
T ss_dssp             EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CT-TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEE
T ss_pred             EECCCCCccccCchHhhcccCcccEEecCCCcc-cc-CchhhhhhceeeEEEeecccccccccCcccccccCcceE-EEE
Confidence            7777777654 3456777777777777777643 22 223334455  7777777764  3333333222111111 233


Q ss_pred             eeccCCccccccc--ccccccceEEeecCCCc-cccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCcccccc
Q 048826          369 IWVCHSLTYLAGV--QLPRSLKRLVILNCDNI-RTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLE  445 (725)
Q Consensus       369 l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~  445 (725)
                      +.++.....+...  ...++|+.+++.++... ..+.  ...    ......+.++.+++.++. +.    ...+....+
T Consensus       203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~--~~~----~~l~~l~~L~~L~L~~~~-l~----~~~~~~~~~  271 (562)
T 3a79_B          203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM--TFL----SELTRGPTLLNVTLQHIE-TT----WKCSVKLFQ  271 (562)
T ss_dssp             ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHH--HHH----HHHHSCSSCEEEEEEEEE-EC----HHHHHHHHH
T ss_pred             ecCccchhhhhhhcccccceEEEecccccccccchHH--HHH----HHHhccCcceEEEecCCc-Cc----HHHHHHHHH
Confidence            4443322222111  22345555555543200 0000  000    000011234455544421 00    000000000


Q ss_pred             ccccCCCCCCccEEEEecccchhhhhhhh-----cCCCCccEEEecCCCCcccccc-cccC---CCcccEEEeccCCCcc
Q 048826          446 SLEVGNLPPSLKSLSVYGCSKLESIAERL-----DNNTSLEYINISNCENLKILPS-GLHN---LRQLQEITIQRCGNLE  516 (725)
Q Consensus       446 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~l~~-~~~~---l~~L~~L~l~~~~~~~  516 (725)
                      ..    ..++|++|++++|...+.+|..+     ..+++|+.+++..+..  .+|. .+..   -.+|++|++++|....
T Consensus       272 ~~----~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~  345 (562)
T 3a79_B          272 FF----WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH  345 (562)
T ss_dssp             HH----TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred             hh----hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc
Confidence            00    00246666666666555555444     3444444444444322  2221 1111   1346666666654321


Q ss_pred             ccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcc----cCCCcccccceecccchhhHHHHhh
Q 048826          517 SFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE----EDGLPTNLHSLWIEDNMEIWKSMIE  592 (725)
Q Consensus       517 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~  592 (725)
                       ++ ....+++|++|++++|.....+|..+..+++|++|++++|. +..++    ....+++|++|++++|.... .++.
T Consensus       346 -~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~  421 (562)
T 3a79_B          346 -MV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNS-HAYD  421 (562)
T ss_dssp             -CC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBS-CCSS
T ss_pred             -cc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCC-ccCh
Confidence             11 01345566666666666555555566666666666666662 22221    13344666666666665321 1111


Q ss_pred             ccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCC
Q 048826          593 RGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKL  672 (725)
Q Consensus       593 ~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l  672 (725)
                        ..+..+++|+.|++++|. ....+|..+           +++|+.|++++| .++.+|..+..+++|+.|++++| .+
T Consensus       422 --~~~~~l~~L~~L~l~~n~-l~~~~~~~l-----------~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l  485 (562)
T 3a79_B          422 --RTCAWAESILVLNLSSNM-LTGSVFRCL-----------PPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QL  485 (562)
T ss_dssp             --CCCCCCTTCCEEECCSSC-CCGGGGSSC-----------CTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CC
T ss_pred             --hhhcCcccCCEEECCCCC-CCcchhhhh-----------cCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CC
Confidence              235556666666666632 112222211           246677777664 46666665556667777777663 45


Q ss_pred             cccCCC--CCcccccEEEecCCc
Q 048826          673 RYFPEK--GLPSSLLQLHIYRCP  693 (725)
Q Consensus       673 ~~l~~~--~~~~~L~~L~l~~c~  693 (725)
                      +.+|..  ..+++|+.|+++++|
T Consensus       486 ~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          486 KSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             CCCCTTSTTTCTTCCCEECCSCC
T ss_pred             CCCCHHHHhcCCCCCEEEecCCC
Confidence            566554  224666667766654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=2e-26  Score=248.18  Aligned_cols=417  Identities=24%  Similarity=0.211  Sum_probs=179.0

Q ss_pred             CCCccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCC
Q 048826           54 FSNLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQG  132 (725)
Q Consensus        54 ~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  132 (725)
                      .++|++|.++++ .++.+|. ++++++|++|++++|.....+|..+      +.+.+|+.+++.+|.             
T Consensus        10 ~~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~------~~l~~L~~l~l~~c~-------------   69 (454)
T 1jl5_A           10 NTFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN------GEQREMAVSRLRDCL-------------   69 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTS------CCCHHHHHHHHHHHH-------------
T ss_pred             cccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCccc------ccchhcchhhhhhhh-------------
Confidence            477888888887 6688887 8888889999888887444555443      224555555555542             


Q ss_pred             CCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCCCceeEcccccccCCCCcccccC
Q 048826          133 VEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGD  212 (725)
Q Consensus       133 ~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  212 (725)
                         ..++++|++++| .++ .+|...++|++|+                     +++|....                  
T Consensus        70 ---~~~l~~L~l~~~-~l~-~lp~~~~~L~~L~---------------------l~~n~l~~------------------  105 (454)
T 1jl5_A           70 ---DRQAHELELNNL-GLS-SLPELPPHLESLV---------------------ASCNSLTE------------------  105 (454)
T ss_dssp             ---HHTCSEEECTTS-CCS-CCCSCCTTCSEEE---------------------CCSSCCSS------------------
T ss_pred             ---ccCCCEEEecCC-ccc-cCCCCcCCCCEEE---------------------ccCCcCCc------------------
Confidence               145678888877 454 4554333444444                     44332111                  


Q ss_pred             CCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCcc
Q 048826          213 TSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLE  292 (725)
Q Consensus       213 ~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~  292 (725)
                                +|                            ..+++|++|+++++ .++.++.            .+++|+
T Consensus       106 ----------lp----------------------------~~~~~L~~L~l~~n-~l~~l~~------------~~~~L~  134 (454)
T 1jl5_A          106 ----------LP----------------------------ELPQSLKSLLVDNN-NLKALSD------------LPPLLE  134 (454)
T ss_dssp             ----------CC----------------------------CCCTTCCEEECCSS-CCSCCCS------------CCTTCC
T ss_pred             ----------cc----------------------------cccCCCcEEECCCC-ccCcccC------------CCCCCC
Confidence                      00                            01245666666663 3433321            125777


Q ss_pred             EEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeecc
Q 048826          293 YLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVC  372 (725)
Q Consensus       293 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  372 (725)
                      +|++++|.+.+ +| .++.+++|++|++++|. ++.++.  .+++|++|++++|. +..++. +  ..+++|+.|++++|
T Consensus       135 ~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~-l~~lp~--~~~~L~~L~L~~n~-l~~l~~-~--~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          135 YLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS-LKKLPD--LPPSLEFIAAGNNQ-LEELPE-L--QNLPFLTAIYADNN  205 (454)
T ss_dssp             EEECCSSCCSS-CC-CCTTCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSS
T ss_pred             EEECcCCCCCC-Cc-ccCCCCCCCEEECCCCc-CcccCC--CcccccEEECcCCc-CCcCcc-c--cCCCCCCEEECCCC
Confidence            77777776643 66 47777778888877764 444443  23577777777765 333442 1  33466666666655


Q ss_pred             CCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCC
Q 048826          373 HSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNL  452 (725)
Q Consensus       373 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~  452 (725)
                      . ++.++.  .+++                                 |++|+++++ .++. ++.  +.         .+
T Consensus       206 ~-l~~l~~--~~~~---------------------------------L~~L~l~~n-~l~~-lp~--~~---------~l  236 (454)
T 1jl5_A          206 S-LKKLPD--LPLS---------------------------------LESIVAGNN-ILEE-LPE--LQ---------NL  236 (454)
T ss_dssp             C-CSSCCC--CCTT---------------------------------CCEEECCSS-CCSS-CCC--CT---------TC
T ss_pred             c-CCcCCC--CcCc---------------------------------ccEEECcCC-cCCc-ccc--cC---------CC
Confidence            2 111111  1112                                 444444332 1111 110  00         00


Q ss_pred             CCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          453 PPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       453 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                       ++|+.|++++|...+ ++.   .+++|+.|++++|. +..+|..   +++|++|++++|. +..++..   .++|+.|+
T Consensus       237 -~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N~-l~~l~~~---~~~L~~L~  303 (454)
T 1jl5_A          237 -PFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSENI-FSGLSEL---PPNLYYLN  303 (454)
T ss_dssp             -TTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSEESCC---CTTCCEEE
T ss_pred             -CCCCEEECCCCcCCc-ccc---cccccCEEECCCCc-ccccCcc---cCcCCEEECcCCc-cCcccCc---CCcCCEEE
Confidence             347777777765543 222   23677777777743 4445542   3667777777754 3333321   14677777


Q ss_pred             eccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCC
Q 048826          533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCD  612 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  612 (725)
                      +++|... .++.   ..++|++|++++|. +..++..  +++|++|++++|....  +   +.   .+++|+.|++++| 
T Consensus       304 l~~N~l~-~i~~---~~~~L~~L~Ls~N~-l~~lp~~--~~~L~~L~L~~N~l~~--l---p~---~l~~L~~L~L~~N-  367 (454)
T 1jl5_A          304 ASSNEIR-SLCD---LPPSLEELNVSNNK-LIELPAL--PPRLERLIASFNHLAE--V---PE---LPQNLKQLHVEYN-  367 (454)
T ss_dssp             CCSSCCS-EECC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCCSC--C---CC---CCTTCCEEECCSS-
T ss_pred             CcCCcCC-cccC---CcCcCCEEECCCCc-ccccccc--CCcCCEEECCCCcccc--c---cc---hhhhccEEECCCC-
Confidence            7776532 2321   12467777777763 3333322  4667777777764321  1   11   3566777777663 


Q ss_pred             CCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEecCC
Q 048826          613 DDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRC  692 (725)
Q Consensus       613 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c  692 (725)
                       ....+|.            .+..+..|.  .++....+|.   .+++|+.|++++|+ ++.++.  +|++++.|.+.+|
T Consensus       368 -~l~~l~~------------ip~~l~~L~--~n~~~~~i~~---~~~~L~~L~ls~N~-l~~~~~--iP~sl~~L~~~~~  426 (454)
T 1jl5_A          368 -PLREFPD------------IPESVEDLR--MNSHLAEVPE---LPQNLKQLHVETNP-LREFPD--IPESVEDLRMNSE  426 (454)
T ss_dssp             -CCSSCCC------------CCTTCCEEE--CCC----------------------------------------------
T ss_pred             -CCCcCCC------------ChHHHHhhh--hccccccccc---ccCcCCEEECCCCc-CCcccc--chhhHhheeCcCc
Confidence             2222221            112333332  2334444442   35889999999864 444433  5677888888876


Q ss_pred             c
Q 048826          693 P  693 (725)
Q Consensus       693 ~  693 (725)
                      .
T Consensus       427 ~  427 (454)
T 1jl5_A          427 R  427 (454)
T ss_dssp             -
T ss_pred             c
Confidence            5

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=3.1e-25  Score=240.95  Aligned_cols=289  Identities=16%  Similarity=0.161  Sum_probs=166.4

Q ss_pred             hhhhcCCCcEEEEccCCCccc-chhhhhhHHHhhhhhccCCccEEEEecccCccccccc-cCCCCCCcEEEeecCCCccc
Q 048826          251 LLQDICSLKRLTIDSCPKLQS-LVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSSLREIEIYKCSSLVS  328 (725)
Q Consensus       251 ~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~  328 (725)
                      .+..+++|++|++++|. ++. ++..   ..+..+    ++|++|++++|.+.+..|.. +..+++|++|++++|.. +.
T Consensus        98 ~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~~~l----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~  168 (455)
T 3v47_A           98 AFNGLANLEVLTLTQCN-LDGAVLSG---NFFKPL----TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KS  168 (455)
T ss_dssp             TTTTCTTCCEEECTTSC-CBTHHHHS---STTTTC----TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB-SC
T ss_pred             hccCcccCCEEeCCCCC-CCccccCc---ccccCc----ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc-cc
Confidence            34667777777777753 332 2221   113333    67777777777765555554 67777777777777653 22


Q ss_pred             cCCCC--C--CCCCceEEeeccCcccccccccc-------cCCCCcccEEEeeccCCccccccc----ccccccceEEee
Q 048826          329 FPEVA--L--PSKLKKIQFRECDALKLLPEAWM-------SDTNSSLEILSIWVCHSLTYLAGV----QLPRSLKRLVIL  393 (725)
Q Consensus       329 ~~~~~--~--l~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~  393 (725)
                      .....  .  ..+|+.|+++++.. ..++....       ...+++|++|++++|......+..    ...++++.+++.
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITL-QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBC-TTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             cChhhhhccccccccccccccCcc-cccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            22111  1  25667777766652 22221110       012356666666666432222111    112345555554


Q ss_pred             cCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCC-CCCCccEEEEecccchhhhhh
Q 048826          394 NCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGN-LPPSLKSLSVYGCSKLESIAE  472 (725)
Q Consensus       394 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~  472 (725)
                      ++......                                 +....++..... .+.. -.++|+.|++++|.+.+..+.
T Consensus       248 ~~~~~~~~---------------------------------~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~  293 (455)
T 3v47_A          248 NSYNMGSS---------------------------------FGHTNFKDPDNF-TFKGLEASGVKTCDLSKSKIFALLKS  293 (455)
T ss_dssp             TCTTTSCC---------------------------------TTCCSSCCCCTT-TTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred             cccccccc---------------------------------cchhhhccCccc-ccccccccCceEEEecCccccccchh
Confidence            44322211                                 111111100000 0000 013588888888888877777


Q ss_pred             hhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCc
Q 048826          473 RLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSL  552 (725)
Q Consensus       473 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  552 (725)
                      .++.+++|+.|++++|......|..+.++++|++|++++|......+..+..+++|++|++++|......|..+..+++|
T Consensus       294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  373 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL  373 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence            88888888888888866555556677788888888888876555556667778888888888887655557777888888


Q ss_pred             ceeecCCCCCCCCccc--CCCcccccceecccch
Q 048826          553 QQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNM  584 (725)
Q Consensus       553 ~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~  584 (725)
                      ++|++++|. +..++.  ...+++|++|++++|+
T Consensus       374 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          374 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence            888888873 333332  2344666666666664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=1.1e-24  Score=236.55  Aligned_cols=110  Identities=16%  Similarity=-0.011  Sum_probs=93.2

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      ++|++|++++|.+.+..+..+..+++|+.|++++|......|..+..+++|++|++++|......|..+..+++|++|++
T Consensus       299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  378 (455)
T 3v47_A          299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL  378 (455)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence            46999999999988888889999999999999997655455777889999999999998776666888899999999999


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGEL  563 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  563 (725)
                      ++|......+..+..+++|++|++++|+..
T Consensus       379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccccCCHhHhccCCcccEEEccCCCcc
Confidence            999855433445689999999999999543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=5.6e-24  Score=231.22  Aligned_cols=100  Identities=12%  Similarity=0.189  Sum_probs=68.1

Q ss_pred             CCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCC
Q 048826           29 HKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFP  108 (725)
Q Consensus        29 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~  108 (725)
                      ++++++|+++++....+|. +.  .+++|++|++++| .+..+++++.+++|++|++++|. +..+++ +      ..++
T Consensus        45 l~~l~~L~l~~~~i~~l~~-~~--~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~------~~l~  112 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDG-VE--YLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP-L------ANLT  112 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTT-GG--GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G------TTCT
T ss_pred             hccccEEecCCCCCccCcc-hh--hhcCCCEEECCCC-ccCCchhhhccccCCEEECCCCc-cccChh-h------cCCC
Confidence            3677888888777777664 32  2678888888887 67777667788888888888776 555544 2      3377


Q ss_pred             CcceeeecccccccccccCCCCCCCCCCCCccEEEeccC
Q 048826          109 CLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRC  147 (725)
Q Consensus       109 ~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c  147 (725)
                      +|++|+++++ .+++.      ..+..+++|++|++++|
T Consensus       113 ~L~~L~L~~n-~l~~~------~~~~~l~~L~~L~l~~n  144 (466)
T 1o6v_A          113 NLTGLTLFNN-QITDI------DPLKNLTNLNRLELSSN  144 (466)
T ss_dssp             TCCEEECCSS-CCCCC------GGGTTCTTCSEEEEEEE
T ss_pred             CCCEEECCCC-CCCCC------hHHcCCCCCCEEECCCC
Confidence            7777777775 34443      12566777777777766

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=3.7e-24  Score=230.64  Aligned_cols=143  Identities=19%  Similarity=0.113  Sum_probs=91.8

Q ss_pred             cCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCC
Q 048826           25 MLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSS  104 (725)
Q Consensus        25 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~  104 (725)
                      .+..+++|++|+++++....+| .+..  +++|++|++++| .++.+| ++.+++|++|++++|. ++.++  +      
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~--l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~------  102 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMT-GIEK--LTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD--V------  102 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCT-TGGG--CTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC--C------
T ss_pred             ChhHcCCCCEEEccCCCcccCh-hhcc--cCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee--c------
Confidence            4445688888888888887776 3443  788888888887 677775 7888888888888886 66653  2      


Q ss_pred             CCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhh-hhhccCCCccc
Q 048826          105 TPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEEL-LASITCLPALC  183 (725)
Q Consensus       105 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l-~~~~~~~~~L~  183 (725)
                      ..+++|++|+++++ ++++.       .+..+++|++|++++| .+++.-...+++|++|++++|..+ ...+..+++|+
T Consensus       103 ~~l~~L~~L~L~~N-~l~~l-------~~~~l~~L~~L~l~~N-~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~  173 (457)
T 3bz5_A          103 TPLTKLTYLNCDTN-KLTKL-------DVSQNPLLTYLNCARN-TLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLT  173 (457)
T ss_dssp             TTCTTCCEEECCSS-CCSCC-------CCTTCTTCCEEECTTS-CCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCC
T ss_pred             CCCCcCCEEECCCC-cCCee-------cCCCCCcCCEEECCCC-ccceeccccCCcCCEEECCCCCcccccccccCCcCC
Confidence            33788888888885 44442       1567788888888877 454221123445555555554322 11234444444


Q ss_pred             EEEecCC
Q 048826          184 KLKIYGC  190 (725)
Q Consensus       184 ~L~l~~~  190 (725)
                      .|++++|
T Consensus       174 ~L~ls~n  180 (457)
T 3bz5_A          174 TLDCSFN  180 (457)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            4444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=1.4e-23  Score=226.06  Aligned_cols=354  Identities=16%  Similarity=0.150  Sum_probs=217.8

Q ss_pred             CCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCCC
Q 048826           54 FSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGV  133 (725)
Q Consensus        54 ~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  133 (725)
                      +++|++|++++| .++.+|.++.+++|++|++++|. ++.++  +      ..+++|++|+++++ .+++.       .+
T Consensus        41 l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~--~------~~l~~L~~L~Ls~N-~l~~~-------~~  102 (457)
T 3bz5_A           41 LATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLD--L------SQNTNLTYLACDSN-KLTNL-------DV  102 (457)
T ss_dssp             HTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCC--C------TTCTTCSEEECCSS-CCSCC-------CC
T ss_pred             cCCCCEEEccCC-CcccChhhcccCCCCEEEccCCc-CCeEc--c------ccCCCCCEEECcCC-CCcee-------ec
Confidence            789999999998 78888889999999999999997 77764  2      34888999999885 45442       26


Q ss_pred             CCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCCCceeEcccccccCCCCcccccCC
Q 048826          134 EGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDT  213 (725)
Q Consensus       134 ~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (725)
                      ..+++|++|++++| .++ .+|                    ++.+++|++|++++|....+.                 
T Consensus       103 ~~l~~L~~L~L~~N-~l~-~l~--------------------~~~l~~L~~L~l~~N~l~~l~-----------------  143 (457)
T 3bz5_A          103 TPLTKLTYLNCDTN-KLT-KLD--------------------VSQNPLLTYLNCARNTLTEID-----------------  143 (457)
T ss_dssp             TTCTTCCEEECCSS-CCS-CCC--------------------CTTCTTCCEEECTTSCCSCCC-----------------
T ss_pred             CCCCcCCEEECCCC-cCC-eec--------------------CCCCCcCCEEECCCCccceec-----------------
Confidence            77888888888887 444 222                    445566666666665422100                 


Q ss_pred             CCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccE
Q 048826          214 SNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEY  293 (725)
Q Consensus       214 ~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~  293 (725)
                                                            +..+++|++|++++|..+..++       +..+    ++|++
T Consensus       144 --------------------------------------l~~l~~L~~L~l~~n~~~~~~~-------~~~l----~~L~~  174 (457)
T 3bz5_A          144 --------------------------------------VSHNTQLTELDCHLNKKITKLD-------VTPQ----TQLTT  174 (457)
T ss_dssp             --------------------------------------CTTCTTCCEEECTTCSCCCCCC-------CTTC----TTCCE
T ss_pred             --------------------------------------cccCCcCCEEECCCCCcccccc-------cccC----CcCCE
Confidence                                                  1344566666666655544432       2222    56777


Q ss_pred             EEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccC
Q 048826          294 LRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCH  373 (725)
Q Consensus       294 L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  373 (725)
                      |++++|.+.+ +|  ++.+++|+.|++++|. ++.+ +++.+++|+.|++++|. +..++  +  ..+++|+.|++++|.
T Consensus       175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~-l~~~-~l~~l~~L~~L~Ls~N~-l~~ip--~--~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNN-ITKL-DLNQNIQLTFLDCSSNK-LTEID--V--TPLTQLTYFDCSVNP  244 (457)
T ss_dssp             EECCSSCCCC-CC--CTTCTTCCEEECCSSC-CSCC-CCTTCTTCSEEECCSSC-CSCCC--C--TTCTTCSEEECCSSC
T ss_pred             EECCCCccce-ec--cccCCCCCEEECcCCc-CCee-ccccCCCCCEEECcCCc-ccccC--c--cccCCCCEEEeeCCc
Confidence            7777766533 44  5666777777777664 3333 34556777777777765 33343  1  234666666666653


Q ss_pred             CcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCC
Q 048826          374 SLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLP  453 (725)
Q Consensus       374 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~  453 (725)
                       ++.++ ...+                                 ++|+.|++++                          
T Consensus       245 -l~~~~-~~~l---------------------------------~~L~~L~l~~--------------------------  263 (457)
T 3bz5_A          245 -LTELD-VSTL---------------------------------SKLTTLHCIQ--------------------------  263 (457)
T ss_dssp             -CSCCC-CTTC---------------------------------TTCCEEECTT--------------------------
T ss_pred             -CCCcC-HHHC---------------------------------CCCCEEeccC--------------------------
Confidence             11111 0011                                 1244443322                          


Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      .+|+.|++++|...+.+|  ++.+++|+.|++++|..++.+|.   ..++|+.|++++|             ++|++|++
T Consensus       264 n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L  325 (457)
T 3bz5_A          264 TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYL  325 (457)
T ss_dssp             CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEEC
T ss_pred             CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEEC
Confidence            125666666666555554  45677888888888777777764   3456666666654             47888888


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDD  613 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  613 (725)
                      ++|.... ++  +..+++|+.|++++|. +..      ++.|..|++.+|...         ....+..|..++++++ .
T Consensus       326 ~~N~l~~-l~--l~~l~~L~~L~l~~N~-l~~------l~~L~~L~l~~n~l~---------g~~~~~~l~~l~l~~N-~  385 (457)
T 3bz5_A          326 NNTELTE-LD--VSHNTKLKSLSCVNAH-IQD------FSSVGKIPALNNNFE---------AEGQTITMPKETLTNN-S  385 (457)
T ss_dssp             TTCCCSC-CC--CTTCTTCSEEECCSSC-CCB------CTTGGGSSGGGTSEE---------EEEEEEECCCBCCBTT-B
T ss_pred             CCCcccc-cc--cccCCcCcEEECCCCC-CCC------ccccccccccCCcEE---------ecceeeecCccccccC-c
Confidence            8887444 43  7788888888888873 332      266777777776432         1134455666666652 2


Q ss_pred             CCccCCCCC
Q 048826          614 DMVSFPPEP  622 (725)
Q Consensus       614 ~~~~l~~~~  622 (725)
                      ....+|..+
T Consensus       386 l~g~ip~~~  394 (457)
T 3bz5_A          386 LTIAVSPDL  394 (457)
T ss_dssp             EEEECCTTC
T ss_pred             EEEEcChhH
Confidence            234555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=4.5e-23  Score=224.13  Aligned_cols=319  Identities=18%  Similarity=0.162  Sum_probs=177.2

Q ss_pred             CCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEE
Q 048826          289 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILS  368 (725)
Q Consensus       289 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  368 (725)
                      ++|++|++++|.+.+ ++. +..+++|++|++++|. +..++.+..+++|++|++++|. +..++..   ..+++|++|+
T Consensus        68 ~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~l~~L~~L~  140 (466)
T 1o6v_A           68 NNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQ-ITDIDPL---KNLTNLNRLE  140 (466)
T ss_dssp             TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGG---TTCTTCSEEE
T ss_pred             cCCCEEECCCCccCC-chh-hhccccCCEEECCCCc-cccChhhcCCCCCCEEECCCCC-CCCChHH---cCCCCCCEEE
Confidence            455555555555432 222 5555555555555553 2333334445555555555553 2222221   2335555555


Q ss_pred             eeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccc
Q 048826          369 IWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLE  448 (725)
Q Consensus       369 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~  448 (725)
                      +++|. +..++....+++|+.|.+.+  .+.....          ....++|++|+++++. +..+-.   +        
T Consensus       141 l~~n~-l~~~~~~~~l~~L~~L~l~~--~~~~~~~----------~~~l~~L~~L~l~~n~-l~~~~~---l--------  195 (466)
T 1o6v_A          141 LSSNT-ISDISALSGLTSLQQLSFGN--QVTDLKP----------LANLTTLERLDISSNK-VSDISV---L--------  195 (466)
T ss_dssp             EEEEE-ECCCGGGTTCTTCSEEEEEE--SCCCCGG----------GTTCTTCCEEECCSSC-CCCCGG---G--------
T ss_pred             CCCCc-cCCChhhccCCcccEeecCC--cccCchh----------hccCCCCCEEECcCCc-CCCChh---h--------
Confidence            55552 33333333444555555532  1111110          0112346666666542 222100   1        


Q ss_pred             cCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcC
Q 048826          449 VGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKL  528 (725)
Q Consensus       449 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  528 (725)
                       ..+ ++|++|++++|...+..+  ++.+++|+.|++++|. +..++ .+..+++|++|++++|......+  +..+++|
T Consensus       196 -~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  267 (466)
T 1o6v_A          196 -AKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKL  267 (466)
T ss_dssp             -GGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             -ccC-CCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccchh--hhcCCCC
Confidence             111 357888888776665544  5667788888887753 44443 46677788888888765433322  5667788


Q ss_pred             ceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEe
Q 048826          529 TRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI  608 (725)
Q Consensus       529 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l  608 (725)
                      +.|++++|... .++. +..+++|++|++++|. +..++....+++|++|++++|....  .    ..+..+++|+.|++
T Consensus       268 ~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~--~----~~~~~l~~L~~L~l  338 (466)
T 1o6v_A          268 TELKLGANQIS-NISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNNISD--I----SPVSSLTKLQRLFF  338 (466)
T ss_dssp             SEEECCSSCCC-CCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSCCSC--C----GGGGGCTTCCEEEC
T ss_pred             CEEECCCCccC-cccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCcCCC--c----hhhccCccCCEeEC
Confidence            88888887643 3333 6777888888888773 3444445556788888888875432  1    12567788888888


Q ss_pred             ecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCC
Q 048826          609 INCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCP  670 (725)
Q Consensus       609 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~  670 (725)
                      ++|  .+..++ .         +..+++|+.|++++|+. ..++. +..+++|+.|++++|+
T Consensus       339 ~~n--~l~~~~-~---------l~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          339 YNN--KVSDVS-S---------LANLTNINWLSAGHNQI-SDLTP-LANLTRITQLGLNDQA  386 (466)
T ss_dssp             CSS--CCCCCG-G---------GTTCTTCCEEECCSSCC-CBCGG-GTTCTTCCEEECCCEE
T ss_pred             CCC--ccCCch-h---------hccCCCCCEEeCCCCcc-Cccch-hhcCCCCCEEeccCCc
Confidence            774  222222 1         23577888888888654 43333 6778888888888754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.90  E-value=3.1e-22  Score=218.53  Aligned_cols=57  Identities=12%  Similarity=0.113  Sum_probs=32.8

Q ss_pred             ceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceecc
Q 048826           33 KQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLG   95 (725)
Q Consensus        33 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~   95 (725)
                      +.++.++.....+|..+    .+++++|++++| .++.+++  +..+++|++|++++|. +..++
T Consensus        14 ~~v~c~~~~l~~ip~~~----~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~   72 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI----PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVE   72 (477)
T ss_dssp             TEEECCSCCCSSCCSCC----CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEEC
T ss_pred             CEEEeCCCCcCcCCCCC----CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeC
Confidence            34555555555556543    246667777666 5555543  6666666666666664 44443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=5.3e-22  Score=207.18  Aligned_cols=304  Identities=18%  Similarity=0.172  Sum_probs=152.6

Q ss_pred             hhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCC
Q 048826          253 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEV  332 (725)
Q Consensus       253 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~  332 (725)
                      ..+++|++|+++++ .++.++.      +..+    ++|++|++++|.+. .++. +..+++|++|++++|. ++.++.+
T Consensus        41 ~~l~~L~~L~l~~~-~i~~~~~------~~~~----~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~-i~~~~~~  106 (347)
T 4fmz_A           41 EELESITKLVVAGE-KVASIQG------IEYL----TNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNK-ITDISAL  106 (347)
T ss_dssp             HHHTTCSEEECCSS-CCCCCTT------GGGC----TTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSC-CCCCGGG
T ss_pred             hhcccccEEEEeCC-ccccchh------hhhc----CCccEEEccCCccc-cchh-hhcCCcCCEEEccCCc-ccCchHH
Confidence            46677888888774 4444432      3333    67888888777653 3444 7777788888887774 5555556


Q ss_pred             CCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCC
Q 048826          333 ALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSS  412 (725)
Q Consensus       333 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  412 (725)
                      ..+++|++|++++|. +..++..   ..+++|+.|++.+|.....++....+++                          
T Consensus       107 ~~l~~L~~L~l~~n~-i~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~l~~--------------------------  156 (347)
T 4fmz_A          107 QNLTNLRELYLNEDN-ISDISPL---ANLTKMYSLNLGANHNLSDLSPLSNMTG--------------------------  156 (347)
T ss_dssp             TTCTTCSEEECTTSC-CCCCGGG---TTCTTCCEEECTTCTTCCCCGGGTTCTT--------------------------
T ss_pred             cCCCcCCEEECcCCc-ccCchhh---ccCCceeEEECCCCCCcccccchhhCCC--------------------------
Confidence            667777777777765 3333321   2345566665555543332222222222                          


Q ss_pred             cccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcc
Q 048826          413 RRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLK  492 (725)
Q Consensus       413 ~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  492 (725)
                                                                 |+.|++++|...+..+  +..+++|+.|++++|. +.
T Consensus       157 -------------------------------------------L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~-l~  190 (347)
T 4fmz_A          157 -------------------------------------------LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ-IE  190 (347)
T ss_dssp             -------------------------------------------CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC-CC
T ss_pred             -------------------------------------------CcEEEecCCCcCCchh--hccCCCCCEEEccCCc-cc
Confidence                                                       4444444433322221  3444445555554432 22


Q ss_pred             cccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCc
Q 048826          493 ILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLP  572 (725)
Q Consensus       493 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  572 (725)
                      .++. +..+++|+.+++++|... .++. +..+++|++|++++|... .++. +..+++|++|++++| .+..++....+
T Consensus       191 ~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l  264 (347)
T 4fmz_A          191 DISP-LASLTSLHYFTAYVNQIT-DITP-VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTN-QISDINAVKDL  264 (347)
T ss_dssp             CCGG-GGGCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS-CCCCCGGGTTC
T ss_pred             cccc-ccCCCccceeecccCCCC-CCch-hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCC-ccCCChhHhcC
Confidence            2322 344455555555543222 2211 334445555555555422 2222 455555555555555 22333333444


Q ss_pred             ccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc
Q 048826          573 TNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS  652 (725)
Q Consensus       573 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~  652 (725)
                      ++|++|++++|....  +    ..+..+++|+.|++++|. .....+..+         ..+++|+.|++++|+ +..++
T Consensus       265 ~~L~~L~l~~n~l~~--~----~~~~~l~~L~~L~L~~n~-l~~~~~~~l---------~~l~~L~~L~L~~n~-l~~~~  327 (347)
T 4fmz_A          265 TKLKMLNVGSNQISD--I----SVLNNLSQLNSLFLNNNQ-LGNEDMEVI---------GGLTNLTTLFLSQNH-ITDIR  327 (347)
T ss_dssp             TTCCEEECCSSCCCC--C----GGGGGCTTCSEEECCSSC-CCGGGHHHH---------HTCTTCSEEECCSSS-CCCCG
T ss_pred             CCcCEEEccCCccCC--C----hhhcCCCCCCEEECcCCc-CCCcChhHh---------hccccCCEEEccCCc-ccccc
Confidence            555555555553321  0    124455666666666531 111111111         245667777777754 44444


Q ss_pred             ccccCCcCCCeEeccCCC
Q 048826          653 SSIVDLQNLTSLYLLDCP  670 (725)
Q Consensus       653 ~~~~~~~~L~~L~l~~c~  670 (725)
                      . +..+++|+.|++++|+
T Consensus       328 ~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          328 P-LASLSKMDSADFANQV  344 (347)
T ss_dssp             G-GGGCTTCSEESSSCC-
T ss_pred             C-hhhhhccceeehhhhc
Confidence            3 5667777777777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=3.9e-22  Score=208.19  Aligned_cols=301  Identities=17%  Similarity=0.164  Sum_probs=218.5

Q ss_pred             CCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEE
Q 048826          289 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILS  368 (725)
Q Consensus       289 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  368 (725)
                      ++|++|++++|.+. .++ .+..+++|++|++++|. ++.++.+..+++|++|++++|. +..++..   ..+++|++|+
T Consensus        44 ~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n~-i~~~~~~---~~l~~L~~L~  116 (347)
T 4fmz_A           44 ESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNK-ITDISAL---QNLTNLRELY  116 (347)
T ss_dssp             TTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGG---TTCTTCSEEE
T ss_pred             ccccEEEEeCCccc-cch-hhhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCCc-ccCchHH---cCCCcCCEEE
Confidence            89999999998774 444 47889999999999985 5566666778888888888875 4444321   3345666666


Q ss_pred             eeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccc
Q 048826          369 IWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLE  448 (725)
Q Consensus       369 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~  448 (725)
                      +++|. +..++.                                                        ...+        
T Consensus       117 l~~n~-i~~~~~--------------------------------------------------------~~~l--------  131 (347)
T 4fmz_A          117 LNEDN-ISDISP--------------------------------------------------------LANL--------  131 (347)
T ss_dssp             CTTSC-CCCCGG--------------------------------------------------------GTTC--------
T ss_pred             CcCCc-ccCchh--------------------------------------------------------hccC--------
Confidence            65542 110000                                                        0000        


Q ss_pred             cCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcC
Q 048826          449 VGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKL  528 (725)
Q Consensus       449 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  528 (725)
                           ++|+.|++++|.....++. +..+++|++|++++|. +..++. +..+++|++|++++|. +..++. +..+++|
T Consensus       132 -----~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L  201 (347)
T 4fmz_A          132 -----TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSL  201 (347)
T ss_dssp             -----TTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTC
T ss_pred             -----CceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCcc
Confidence                 2477777777765555443 7889999999999965 444443 7789999999999975 444544 6788999


Q ss_pred             ceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEe
Q 048826          529 TRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI  608 (725)
Q Consensus       529 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l  608 (725)
                      +.+++++|.... ++. +..+++|++|++++|. +..++....+++|++|++++|....  +    ..+..+++|+.|++
T Consensus       202 ~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~--~----~~~~~l~~L~~L~l  272 (347)
T 4fmz_A          202 HYFTAYVNQITD-ITP-VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISD--I----NAVKDLTKLKMLNV  272 (347)
T ss_dssp             CEEECCSSCCCC-CGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCC--C----GGGTTCTTCCEEEC
T ss_pred             ceeecccCCCCC-Cch-hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCC--C----hhHhcCCCcCEEEc
Confidence            999999997543 433 7889999999999994 4444546677999999999996542  1    34778999999999


Q ss_pred             ecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEE
Q 048826          609 INCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLH  688 (725)
Q Consensus       609 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~  688 (725)
                      ++|  .+..++.          +..+++|+.|++++|+.....+..+..+++|+.|++++|+ ++.+++...+++|++|+
T Consensus       273 ~~n--~l~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~  339 (347)
T 4fmz_A          273 GSN--QISDISV----------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSAD  339 (347)
T ss_dssp             CSS--CCCCCGG----------GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEES
T ss_pred             cCC--ccCCChh----------hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceee
Confidence            995  3333332          2368999999999986555666677899999999999986 56665555578999999


Q ss_pred             ecCCc
Q 048826          689 IYRCP  693 (725)
Q Consensus       689 l~~c~  693 (725)
                      +++|+
T Consensus       340 l~~N~  344 (347)
T 4fmz_A          340 FANQV  344 (347)
T ss_dssp             SSCC-
T ss_pred             hhhhc
Confidence            99986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=7.5e-22  Score=209.41  Aligned_cols=292  Identities=16%  Similarity=0.153  Sum_probs=208.4

Q ss_pred             hhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCc
Q 048826          247 SHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSL  326 (725)
Q Consensus       247 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~  326 (725)
                      .+..++..+++|++|+++++ .++.+++..    +..+    ++|++|++++|.+.+..+..++.+++|++|++++|. +
T Consensus        60 l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l  129 (390)
T 3o6n_A           60 LPAALLDSFRQVELLNLNDL-QIEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-L  129 (390)
T ss_dssp             ECTHHHHHCCCCSEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred             CChhHhcccccCcEEECCCC-cccccChhh----ccCC----CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-c
Confidence            44556688889999999885 566665532    4444    789999999988866666778889999999999875 5


Q ss_pred             cccCC--CCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccc
Q 048826          327 VSFPE--VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTME  404 (725)
Q Consensus       327 ~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  404 (725)
                      +.++.  +..+++|++|++++|......+..+  ..+++|++|++++|. ++.+ ....+++|+.+++.++. +..+.  
T Consensus       130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~-~~~~l~~L~~L~l~~n~-l~~~~--  202 (390)
T 3o6n_A          130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNR-LTHV-DLSLIPSLFHANVSYNL-LSTLA--  202 (390)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--SSCTTCCEEECCSSC-CSBC-CGGGCTTCSEEECCSSC-CSEEE--
T ss_pred             CcCCHHHhcCCCCCcEEECCCCccCccChhhc--cCCCCCCEEECCCCc-CCcc-ccccccccceeeccccc-ccccC--
Confidence            56654  3458889999998887433333333  345889999998874 3333 23455678888877653 22211  


Q ss_pred             cccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEE
Q 048826          405 EGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYIN  484 (725)
Q Consensus       405 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~  484 (725)
                                 ..+.+++|+++++ .+.. ++..             .+++|+.|++++|...+.  ..+..+++|+.|+
T Consensus       203 -----------~~~~L~~L~l~~n-~l~~-~~~~-------------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  254 (390)
T 3o6n_A          203 -----------IPIAVEELDASHN-SINV-VRGP-------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVD  254 (390)
T ss_dssp             -----------CCSSCSEEECCSS-CCCE-EECC-------------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             -----------CCCcceEEECCCC-eeee-cccc-------------ccccccEEECCCCCCccc--HHHcCCCCccEEE
Confidence                       1134888888774 3333 2211             114699999999977664  4678899999999


Q ss_pred             ecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCC
Q 048826          485 ISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELP  564 (725)
Q Consensus       485 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  564 (725)
                      +++|......|..+..+++|++|++++| .+..++.....+++|++|++++|. +..+|..+..+++|++|++++|. +.
T Consensus       255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~  331 (390)
T 3o6n_A          255 LSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IV  331 (390)
T ss_dssp             CCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CC
T ss_pred             CCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cc
Confidence            9997655556778888999999999985 456677777788899999999997 45677778888999999999985 44


Q ss_pred             CcccCCCcccccceecccchhhH
Q 048826          565 SLEEDGLPTNLHSLWIEDNMEIW  587 (725)
Q Consensus       565 ~~~~~~~~~~L~~L~l~~n~~~~  587 (725)
                      .++ ...+++|++|++++|+...
T Consensus       332 ~~~-~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          332 TLK-LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CCC-CCTTCCCSEEECCSSCEEH
T ss_pred             eeC-chhhccCCEEEcCCCCccc
Confidence            444 4456889999999987654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=6.5e-22  Score=209.91  Aligned_cols=103  Identities=17%  Similarity=0.131  Sum_probs=86.3

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      ++|++|++++|.+.+..+..+..+++|+.|++++| .+..+|..+..+++|++|++++|. +..+|..+..+++|++|++
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYL  325 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEEC
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEEC
Confidence            45999999999888887888999999999999995 566677777889999999999974 5577777778899999999


Q ss_pred             ccccCccccccccCCCCCcceeecCCCC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~  561 (725)
                      ++|+. ..++  +..+++|++|++++|+
T Consensus       326 ~~N~i-~~~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          326 DHNSI-VTLK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CSSCC-CCCC--CCTTCCCSEEECCSSC
T ss_pred             CCCcc-ceeC--chhhccCCEEEcCCCC
Confidence            99984 4444  6788999999999984

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.88  E-value=1.2e-21  Score=213.88  Aligned_cols=177  Identities=18%  Similarity=0.243  Sum_probs=134.2

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      ++|++|++++|...+..+..+..+++|+.|++++|......+..+..+++|+.|++++|+....++.......+|+.|++
T Consensus       152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  231 (477)
T 2id5_A          152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI  231 (477)
T ss_dssp             TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred             CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence            35999999999887777778899999999999997655555557888999999999999988888887777779999999


Q ss_pred             ccccCccccc-cccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          534 LDCKRLEALP-KGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       534 ~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      ++|.. +.+| ..+..+++|++|++++|. +..++.  ...+++|++|++++|....  +  .+..+..+++|+.|++++
T Consensus       232 ~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~--~--~~~~~~~l~~L~~L~L~~  305 (477)
T 2id5_A          232 THCNL-TAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAV--V--EPYAFRGLNYLRVLNVSG  305 (477)
T ss_dssp             ESSCC-CSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSE--E--CTTTBTTCTTCCEEECCS
T ss_pred             cCCcc-cccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccce--E--CHHHhcCcccCCEEECCC
Confidence            99974 4555 467889999999999985 333332  3445888899998886432  1  124577788888888888


Q ss_pred             CCCCCccCCCCCcccccCcccCCCCCCcEEEeccCc
Q 048826          611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFP  646 (725)
Q Consensus       611 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  646 (725)
                      |  .+..++...        +..+++|+.|++++|+
T Consensus       306 N--~l~~~~~~~--------~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          306 N--QLTTLEESV--------FHSVGNLETLILDSNP  331 (477)
T ss_dssp             S--CCSCCCGGG--------BSCGGGCCEEECCSSC
T ss_pred             C--cCceeCHhH--------cCCCcccCEEEccCCC
Confidence            3  444555433        2356788888888865

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=4.6e-21  Score=214.70  Aligned_cols=308  Identities=15%  Similarity=0.136  Sum_probs=230.7

Q ss_pred             CCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccc
Q 048826          227 LPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLP  306 (725)
Q Consensus       227 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~  306 (725)
                      +.+++.+.+.+..-    ...+..++..+++|++|++++| .++.+++..    +..+    ++|++|+|++|.+.+..|
T Consensus        50 l~~l~~l~l~~~~l----~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~  116 (597)
T 3oja_B           50 LNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDL-QIEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPP  116 (597)
T ss_dssp             GCCCSEEEESSCEE----SEECTHHHHHCCCCSEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSSCCCCCCT
T ss_pred             CCCceEEEeeCCCC----CCcCHHHHccCCCCcEEECCCC-CCCCCChHH----hcCC----CCCCEEECCCCcCCCCCH
Confidence            45566666655432    3467777899999999999996 577766532    4455    899999999999877777


Q ss_pred             cccCCCCCCcEEEeecCCCccccCC--CCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccc
Q 048826          307 QSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLP  384 (725)
Q Consensus       307 ~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  384 (725)
                      ..++.+++|++|++++|. ++.++.  ++.+++|++|++++|......+..+  ..+++|+.|++++|. ++.++ ...+
T Consensus       117 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~-~~~l  191 (597)
T 3oja_B          117 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNR-LTHVD-LSLI  191 (597)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECTTSC-CSBCC-GGGC
T ss_pred             HHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh--hcCCcCcEEECcCCC-CCCcC-hhhh
Confidence            788999999999999986 556664  3568999999999997544444333  345899999999984 44442 3456


Q ss_pred             cccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecc
Q 048826          385 RSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGC  464 (725)
Q Consensus       385 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~  464 (725)
                      ++|+.|++.++.- ..+.             ..++|++|+++++ .+.. ++..             .+++|+.|++++|
T Consensus       192 ~~L~~L~l~~n~l-~~l~-------------~~~~L~~L~ls~n-~l~~-~~~~-------------~~~~L~~L~L~~n  242 (597)
T 3oja_B          192 PSLFHANVSYNLL-STLA-------------IPIAVEELDASHN-SINV-VRGP-------------VNVELTILKLQHN  242 (597)
T ss_dssp             TTCSEEECCSSCC-SEEE-------------CCTTCSEEECCSS-CCCE-EECS-------------CCSCCCEEECCSS
T ss_pred             hhhhhhhcccCcc-cccc-------------CCchhheeeccCC-cccc-cccc-------------cCCCCCEEECCCC
Confidence            7889998887532 2221             1135889988874 3333 2111             1246999999999


Q ss_pred             cchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcccccc
Q 048826          465 SKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPK  544 (725)
Q Consensus       465 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  544 (725)
                      .+.+.  ..++.+++|+.|++++|......|..+..+++|+.|++++|. +..+|..+..+++|+.|++++|.. ..+|.
T Consensus       243 ~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~  318 (597)
T 3oja_B          243 NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL-LHVER  318 (597)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCC-CCCGG
T ss_pred             CCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCC-CccCc
Confidence            87763  578899999999999977666668889999999999999964 556777778899999999999984 47888


Q ss_pred             ccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhH
Q 048826          545 GLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIW  587 (725)
Q Consensus       545 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~  587 (725)
                      .+..+++|++|++++|. +..++ ...+++|+.|++++|+...
T Consensus       319 ~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          319 NQPQFDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             GHHHHTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSCEEH
T ss_pred             ccccCCCCCEEECCCCC-CCCcC-hhhcCCCCEEEeeCCCCCC
Confidence            88889999999999995 34443 4456899999999997643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=3.5e-20  Score=207.53  Aligned_cols=84  Identities=12%  Similarity=0.064  Sum_probs=61.5

Q ss_pred             hcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC--
Q 048826          254 DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--  331 (725)
Q Consensus       254 ~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--  331 (725)
                      .+.+++.++++++ .++.+|+..    +..+    ++|++|+|++|.+.+..+..++.+++|++|+|++|. ++.+++  
T Consensus        49 ~l~~l~~l~l~~~-~l~~lp~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~  118 (597)
T 3oja_B           49 TLNNQKIVTFKNS-TMRKLPAAL----LDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV  118 (597)
T ss_dssp             GGCCCSEEEESSC-EESEECTHH----HHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred             cCCCceEEEeeCC-CCCCcCHHH----HccC----CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH
Confidence            4578889999884 677777643    4444    789999999988866666688889999999999886 444443  


Q ss_pred             CCCCCCCceEEeeccC
Q 048826          332 VALPSKLKKIQFRECD  347 (725)
Q Consensus       332 ~~~l~~L~~L~l~~~~  347 (725)
                      ++.+++|++|++++|.
T Consensus       119 ~~~l~~L~~L~L~~n~  134 (597)
T 3oja_B          119 FQNVPLLTVLVLERND  134 (597)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             HcCCCCCCEEEeeCCC
Confidence            3457777777777765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=8.5e-22  Score=221.53  Aligned_cols=205  Identities=11%  Similarity=0.038  Sum_probs=124.5

Q ss_pred             CCccEEEEecccchhhhh-hhhcCCCCccEEEecCCCCcccccccccCCCcccEEEecc----------CCCccc--cCC
Q 048826          454 PSLKSLSVYGCSKLESIA-ERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQR----------CGNLES--FPE  520 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~----------~~~~~~--~~~  520 (725)
                      ++|++|++++|...+... ..+..+++|+.|+++++.....++.....+++|++|++++          |..+..  ++.
T Consensus       293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~  372 (592)
T 3ogk_B          293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA  372 (592)
T ss_dssp             GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred             CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence            468888888887554433 4467888888888874322233444445678888888884          544432  222


Q ss_pred             CCcCcCcCceeeeccccCccccccccC-CCCCcceeecCC---CCCCCCccc-------CCCcccccceecccchh-hHH
Q 048826          521 GGLLCAKLTRLTILDCKRLEALPKGLH-NLTSLQQLTIGK---GGELPSLEE-------DGLPTNLHSLWIEDNME-IWK  588 (725)
Q Consensus       521 ~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~---~~~l~~~~~-------~~~~~~L~~L~l~~n~~-~~~  588 (725)
                      ....+++|++|++..+......+..+. .+++|++|++++   |..+...+.       ...+++|++|+++.|.. +.+
T Consensus       373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~  452 (592)
T 3ogk_B          373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD  452 (592)
T ss_dssp             HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred             HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence            234577888888865554444444443 378888888873   334443211       22357888888876542 222


Q ss_pred             HHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccc--ccccccCCcCCCeEec
Q 048826          589 SMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLER--LSSSIVDLQNLTSLYL  666 (725)
Q Consensus       589 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--i~~~~~~~~~L~~L~l  666 (725)
                      ....  .....+++|+.|++++|......++...         ..+++|++|++++|+ ++.  ++..+..+++|+.|++
T Consensus       453 ~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~---------~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l  520 (592)
T 3ogk_B          453 LGLS--YIGQYSPNVRWMLLGYVGESDEGLMEFS---------RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV  520 (592)
T ss_dssp             HHHH--HHHHSCTTCCEEEECSCCSSHHHHHHHH---------TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred             HHHH--HHHHhCccceEeeccCCCCCHHHHHHHH---------hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC
Confidence            2222  2234578899999987532222222211         246889999999987 432  3333356889999999


Q ss_pred             cCCC
Q 048826          667 LDCP  670 (725)
Q Consensus       667 ~~c~  670 (725)
                      ++|+
T Consensus       521 s~n~  524 (592)
T 3ogk_B          521 QGYR  524 (592)
T ss_dssp             ESCB
T ss_pred             cCCc
Confidence            9986

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=1e-21  Score=220.91  Aligned_cols=129  Identities=15%  Similarity=0.111  Sum_probs=69.9

Q ss_pred             CccEEEEecccchhhhhhhhcC-CCCccEEEecC---CCCcccc------cccccCCCcccEEEeccCCC-cc-c-cCCC
Q 048826          455 SLKSLSVYGCSKLESIAERLDN-NTSLEYINISN---CENLKIL------PSGLHNLRQLQEITIQRCGN-LE-S-FPEG  521 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~-l~~L~~L~l~~---~~~~~~l------~~~~~~l~~L~~L~l~~~~~-~~-~-~~~~  521 (725)
                      +|++|+++.+.+.+..+..++. +++|+.|++++   |+.++..      +..+.++++|+.|++++|.. +. . +...
T Consensus       379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~  458 (592)
T 3ogk_B          379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI  458 (592)
T ss_dssp             TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred             cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence            4667777666555555555543 66777777752   3344432      22244567777777765432 11 1 1111


Q ss_pred             CcCcCcCceeeeccccCcc-ccccccCCCCCcceeecCCCCCCCCc--c-cCCCcccccceecccch
Q 048826          522 GLLCAKLTRLTILDCKRLE-ALPKGLHNLTSLQQLTIGKGGELPSL--E-EDGLPTNLHSLWIEDNM  584 (725)
Q Consensus       522 ~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~--~-~~~~~~~L~~L~l~~n~  584 (725)
                      ...+++|++|++++|.... .++..+..+++|++|++++|. +...  + ....+++|++|++++|+
T Consensus       459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            2235667777777766432 233344666777777777775 3221  1 12234677777777776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=1.2e-21  Score=220.36  Aligned_cols=83  Identities=13%  Similarity=0.214  Sum_probs=37.6

Q ss_pred             CccEEEEecccchhhhhhhhcC-CCCccEEEecCCCCcccccccc-cCCCcccEEEeccCCCccccC-CCCcCcCcCcee
Q 048826          455 SLKSLSVYGCSKLESIAERLDN-NTSLEYINISNCENLKILPSGL-HNLRQLQEITIQRCGNLESFP-EGGLLCAKLTRL  531 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L  531 (725)
                      +|++|++++ ...+.....+.. +++|+.|++++|.........+ .++++|++|++++|+...... .....+++|+.|
T Consensus       433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  511 (594)
T 2p1m_B          433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL  511 (594)
T ss_dssp             TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred             CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence            456666654 333333333333 5556666665544322211111 335556666665555421111 122334555555


Q ss_pred             eeccccC
Q 048826          532 TILDCKR  538 (725)
Q Consensus       532 ~l~~~~~  538 (725)
                      ++++|+.
T Consensus       512 ~l~~~~~  518 (594)
T 2p1m_B          512 WMSSCSV  518 (594)
T ss_dssp             EEESSCC
T ss_pred             eeeCCCC
Confidence            5555553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.83  E-value=4.1e-20  Score=189.21  Aligned_cols=127  Identities=15%  Similarity=0.146  Sum_probs=64.8

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD  535 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  535 (725)
                      |+.|++++|.+.+.+|..+..++ |+.|++++|......|..+..+++|+.|++++|.....++. +..+++|++|++++
T Consensus       176 L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRN  253 (313)
T ss_dssp             CCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCS
T ss_pred             CcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcC
Confidence            45555555544444444444444 55555555443334444455555555555555443333332 34455556666655


Q ss_pred             ccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccch
Q 048826          536 CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNM  584 (725)
Q Consensus       536 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~  584 (725)
                      |.....+|..+..+++|++|++++|.....++....+++|+.+++.+|+
T Consensus       254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence            5544455555555566666666655332233333444556666666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=3.9e-19  Score=183.96  Aligned_cols=201  Identities=13%  Similarity=0.094  Sum_probs=96.9

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcc--cccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLK--ILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      |++|++++|.+....+..+..+++|+.|++++|....  ..+..+..+ +|++|++++|. +..+|..+.  ++|++|++
T Consensus       125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l  200 (332)
T 2ft3_A          125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHL  200 (332)
T ss_dssp             CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBC
T ss_pred             CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEEC
Confidence            4444444444443333345555555555555543321  223334444 56666666543 334444332  46666666


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCcc--cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE--EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC  611 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~  611 (725)
                      ++|......+..+..+++|++|++++|.. ..++  ....+++|++|++++|...     ..+..+..+++|+.|++++ 
T Consensus       201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~-  273 (332)
T 2ft3_A          201 DHNKIQAIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLS-----RVPAGLPDLKLLQVVYLHT-  273 (332)
T ss_dssp             CSSCCCCCCTTSSTTCTTCSCCBCCSSCC-CCCCTTGGGGCTTCCEEECCSSCCC-----BCCTTGGGCTTCCEEECCS-
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcC-CcCChhHhhCCCCCCEEECCCCcCe-----ecChhhhcCccCCEEECCC-
Confidence            66654444445566666666666666632 2221  1223355555555555332     1123355666677777766 


Q ss_pred             CCCCccCCCCCcccccCcccCCCCCCcEEEeccCccc--ccccccccCCcCCCeEeccCCC
Q 048826          612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNL--ERLSSSIVDLQNLTSLYLLDCP  670 (725)
Q Consensus       612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~i~~~~~~~~~L~~L~l~~c~  670 (725)
                       +.+..++.....  ........++|+.|++++|+..  ...+..+..+++|+.+++++|.
T Consensus       274 -N~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          274 -NNITKVGVNDFC--PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             -SCCCBCCTTSSS--CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             -CCCCccChhHcc--ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence             233333332110  0000012456777777776533  2334455667777777777653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=2.6e-19  Score=185.22  Aligned_cols=104  Identities=16%  Similarity=0.137  Sum_probs=55.6

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCC-CCcC------cCc
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPE-GGLL------CAK  527 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~------l~~  527 (725)
                      +|+.|++++|.+.+..+..+..+++|+.|++++| .+..+|..+..+++|++|++++|+. +.++. .+..      .++
T Consensus       218 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~~~~~~~  295 (332)
T 2ft3_A          218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAY  295 (332)
T ss_dssp             TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCC-CBCCTTSSSCSSCCSSSCC
T ss_pred             CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCC-CccChhHcccccccccccc
Confidence            3666666666555555555666666777777664 3446666666666666666666543 33322 1111      245


Q ss_pred             CceeeeccccCc--cccccccCCCCCcceeecCCC
Q 048826          528 LTRLTILDCKRL--EALPKGLHNLTSLQQLTIGKG  560 (725)
Q Consensus       528 L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~  560 (725)
                      |+.|++.+|+..  ...|..+..+++|+.+++++|
T Consensus       296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             ccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            566666666533  233344555555555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=3.7e-19  Score=183.99  Aligned_cols=60  Identities=17%  Similarity=0.124  Sum_probs=34.1

Q ss_pred             hhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCC
Q 048826          253 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCS  324 (725)
Q Consensus       253 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~  324 (725)
                      ..+++|++|+++++ .++.++...           +++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        97 ~~l~~L~~L~Ls~n-~l~~l~~~~-----------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  156 (330)
T 1xku_A           97 APLVKLERLYLSKN-QLKELPEKM-----------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP  156 (330)
T ss_dssp             TTCTTCCEEECCSS-CCSBCCSSC-----------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred             cCCCCCCEEECCCC-cCCccChhh-----------cccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence            45566666666663 344444321           1466666666666544444455666666666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=7.1e-19  Score=181.89  Aligned_cols=129  Identities=13%  Similarity=0.124  Sum_probs=59.4

Q ss_pred             CCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeec
Q 048826          478 TSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTI  557 (725)
Q Consensus       478 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  557 (725)
                      ++|++|++++|......|..+..+++|++|++++|......+..+..+++|++|++++|. +..+|..+..+++|++|++
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l  270 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYL  270 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEEC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEEC
Confidence            455555555543322223445555555555555544333333344455555555555554 3355555555566666666


Q ss_pred             CCCCCCCCcccCC--------CcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          558 GKGGELPSLEEDG--------LPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       558 ~~~~~l~~~~~~~--------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      ++|. +..++...        ..++++.|++.+|+.....+.  +..+.++.+|+.+++++
T Consensus       271 ~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~--~~~f~~~~~l~~l~L~~  328 (330)
T 1xku_A          271 HNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ--PSTFRCVYVRAAVQLGN  328 (330)
T ss_dssp             CSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC--GGGGTTCCCGGGEEC--
T ss_pred             CCCc-CCccChhhcCCcccccccccccceEeecCcccccccC--ccccccccceeEEEecc
Confidence            6552 22222111        124555555555543221111  13444555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.81  E-value=1.3e-19  Score=186.67  Aligned_cols=216  Identities=24%  Similarity=0.301  Sum_probs=101.7

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD  535 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  535 (725)
                      ++.|++++|.+. .+|..++.+++|++|++++|. +..+|..+..+++|++|++++|.. ..+|..+..+++|++|++++
T Consensus        83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEEE
T ss_pred             eeEEEccCCCch-hcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECCC
Confidence            444444444332 333334444444444444432 224444444444444444444322 24444444444444444444


Q ss_pred             ccCccccccccCC---------CCCcceeecCCCCCCCCccc-CCCcccccceecccchhhHHHHhhccccccccCCCcE
Q 048826          536 CKRLEALPKGLHN---------LTSLQQLTIGKGGELPSLEE-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRR  605 (725)
Q Consensus       536 ~~~~~~~~~~~~~---------l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~  605 (725)
                      |...+.+|..+..         +++|++|++++|. +..++. .+.+++|++|++++|....     .+..+..+++|++
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~  233 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEE  233 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCE
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCE
Confidence            4444444433322         4444444444442 112221 2223444444444443221     1123455566666


Q ss_pred             EEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCC-Ccccc
Q 048826          606 LTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKG-LPSSL  684 (725)
Q Consensus       606 L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~L  684 (725)
                      |++++| .....+|..++         .+++|+.|++++|+.++.+|..+..+++|+.|++++|+.++.+|... .+++|
T Consensus       234 L~Ls~n-~~~~~~p~~~~---------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L  303 (328)
T 4fcg_A          234 LDLRGC-TALRNYPPIFG---------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN  303 (328)
T ss_dssp             EECTTC-TTCCBCCCCTT---------CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred             EECcCC-cchhhhHHHhc---------CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence            666653 33444454442         45666666666666666666666666666666666666666665532 24555


Q ss_pred             cEEEec
Q 048826          685 LQLHIY  690 (725)
Q Consensus       685 ~~L~l~  690 (725)
                      +.+++.
T Consensus       304 ~~l~l~  309 (328)
T 4fcg_A          304 CIILVP  309 (328)
T ss_dssp             CEEECC
T ss_pred             eEEeCC
Confidence            555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.81  E-value=2.3e-20  Score=191.08  Aligned_cols=227  Identities=15%  Similarity=0.104  Sum_probs=162.4

Q ss_pred             CCccEEEEec-ccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          454 PSLKSLSVYG-CSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      ++|++|++++ |...+.+|..++.+++|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            4688888884 777777777888888888888888665557777788888888888888766667777777888888888


Q ss_pred             eccccCccccccccCCCC-CcceeecCCCCCCCCccc-CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          533 ILDCKRLEALPKGLHNLT-SLQQLTIGKGGELPSLEE-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      +++|.....+|..+..++ +|++|++++|.....++. ...++ |++|++++|.....    .+..+..+++|+.|++++
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~  230 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC----CGGGCCTTSCCSEEECCS
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc----CCHHHhcCCCCCEEECCC
Confidence            888876667777777777 888888888743222222 22223 88888888864321    124567788888888888


Q ss_pred             CCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEec
Q 048826          611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIY  690 (725)
Q Consensus       611 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~  690 (725)
                      |. ....+|. .         ..+++|++|++++|.....+|..+..+++|+.|++++|+....+|....+++|+.+++.
T Consensus       231 N~-l~~~~~~-~---------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~  299 (313)
T 1ogq_A          231 NS-LAFDLGK-V---------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA  299 (313)
T ss_dssp             SE-ECCBGGG-C---------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred             Cc-eeeecCc-c---------cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence            42 1222222 2         25688888888886654478887888888888988887655567776667888888888


Q ss_pred             CCchhH
Q 048826          691 RCPLIE  696 (725)
Q Consensus       691 ~c~~l~  696 (725)
                      +++.+.
T Consensus       300 ~N~~lc  305 (313)
T 1ogq_A          300 NNKCLC  305 (313)
T ss_dssp             SSSEEE
T ss_pred             CCCCcc
Confidence            887664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.81  E-value=3.1e-22  Score=217.74  Aligned_cols=268  Identities=18%  Similarity=0.149  Sum_probs=135.4

Q ss_pred             CCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCC-----cCCC-CCCCCccceeeecCcccceeccccccCCC
Q 048826           29 HKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCT-----TWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGND  102 (725)
Q Consensus        29 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~  102 (725)
                      +++|++|+++++.....+..-....+++|++|++++| .++     .++. +..+++|++|++++|. +.+........ 
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~-   78 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQ-   78 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHH-
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHH-
Confidence            4678889998888654331100123788999999988 465     3444 6778889999998886 54432211111 


Q ss_pred             CCCCCC----CcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhh-cc
Q 048826          103 SSTPFP----CLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLAS-IT  177 (725)
Q Consensus       103 ~~~~~~----~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~-~~  177 (725)
                         .++    +|++|+++++ .+.+......+..+..+++|++|++++|. +++..+.              .+... ..
T Consensus        79 ---~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~--------------~l~~~l~~  139 (461)
T 1z7x_W           79 ---GLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQ--------------LLCEGLLD  139 (461)
T ss_dssp             ---TTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHH--------------HHHHHHTS
T ss_pred             ---HHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHH--------------HHHHHHhc
Confidence               122    5777777775 23321000002233556666666666662 3211000              00111 22


Q ss_pred             CCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCC
Q 048826          178 CLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICS  257 (725)
Q Consensus       178 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  257 (725)
                      ..++|++|++++|......                                                .......+..+++
T Consensus       140 ~~~~L~~L~L~~n~l~~~~------------------------------------------------~~~l~~~l~~~~~  171 (461)
T 1z7x_W          140 PQCRLEKLQLEYCSLSAAS------------------------------------------------CEPLASVLRAKPD  171 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGG------------------------------------------------HHHHHHHHHHCTT
T ss_pred             CCCcceEEECCCCCCCHHH------------------------------------------------HHHHHHHHhhCCC
Confidence            3456777777766422100                                                0011223355666


Q ss_pred             CcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccc----cccccCCCCCCcEEEeecCCCccccC---
Q 048826          258 LKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK----LPQSSLSLSSLREIEIYKCSSLVSFP---  330 (725)
Q Consensus       258 L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~---  330 (725)
                      |++|++++|. ++......+..   .+....++|++|++++|.+...    ++..+..+++|++|++++|. ++...   
T Consensus       172 L~~L~L~~n~-i~~~~~~~l~~---~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~  246 (461)
T 1z7x_W          172 FKELTVSNND-INEAGVRVLCQ---GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAE  246 (461)
T ss_dssp             CCEEECCSSB-CHHHHHHHHHH---HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHH
T ss_pred             CCEEECcCCC-cchHHHHHHHH---HHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHH
Confidence            6667666653 33322221111   1111124667777776665432    45555666677777777664 22211   


Q ss_pred             ---C-CCCCCCCceEEeeccCcccc----cccccccCCCCcccEEEeeccC
Q 048826          331 ---E-VALPSKLKKIQFRECDALKL----LPEAWMSDTNSSLEILSIWVCH  373 (725)
Q Consensus       331 ---~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~  373 (725)
                         . ...+++|++|++++|.....    ++..+  ..+++|++|++++|.
T Consensus       247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL--RAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH--HHCTTCCEEECTTCC
T ss_pred             HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH--hhCCCcceEECCCCC
Confidence               0 11256677777777642221    22222  123667777776663

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.81  E-value=2.9e-19  Score=183.95  Aligned_cols=221  Identities=20%  Similarity=0.292  Sum_probs=178.7

Q ss_pred             CCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccccc
Q 048826          418 SLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSG  497 (725)
Q Consensus       418 ~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~  497 (725)
                      +++++|+++++ .++.      +|..+..+      ++|++|++++|.+. .+|..++.+++|++|++++|. +..+|..
T Consensus        81 ~~l~~L~L~~n-~l~~------lp~~l~~l------~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~  145 (328)
T 4fcg_A           81 PGRVALELRSV-PLPQ------FPDQAFRL------SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPAS  145 (328)
T ss_dssp             TTCCEEEEESS-CCSS------CCSCGGGG------TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGG
T ss_pred             cceeEEEccCC-Cchh------cChhhhhC------CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHH
Confidence            45788888773 2332      23322221      46999999999877 778889999999999999964 5588989


Q ss_pred             ccCCCcccEEEeccCCCccccCCCCcC---------cCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCccc
Q 048826          498 LHNLRQLQEITIQRCGNLESFPEGGLL---------CAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE  568 (725)
Q Consensus       498 ~~~l~~L~~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  568 (725)
                      +..+++|++|++++|+..+.+|..+..         +++|++|++++|.. +.+|..+..+++|++|++++|......+.
T Consensus       146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~  224 (328)
T 4fcg_A          146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPA  224 (328)
T ss_dssp             GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred             HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchh
Confidence            999999999999999999999887654         89999999999974 48888899999999999999954332233


Q ss_pred             CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccc
Q 048826          569 DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNL  648 (725)
Q Consensus       569 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  648 (725)
                      ...+++|++|++++|....    ..+..+..+++|+.|++++| .....+|..++         .+++|+.|++++|+.+
T Consensus       225 l~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n-~~~~~~p~~~~---------~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILKDC-SNLLTLPLDIH---------RLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECTTC-TTCCBCCTTGG---------GCTTCCEEECTTCTTC
T ss_pred             hccCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECCCC-Cchhhcchhhh---------cCCCCCEEeCCCCCch
Confidence            5566899999999997653    12356888999999999994 56777887764         6899999999999999


Q ss_pred             ccccccccCCcCCCeEeccC
Q 048826          649 ERLSSSIVDLQNLTSLYLLD  668 (725)
Q Consensus       649 ~~i~~~~~~~~~L~~L~l~~  668 (725)
                      +.+|..+..+++|+.+++..
T Consensus       291 ~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          291 SRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CCCCGGGGGSCTTCEEECCG
T ss_pred             hhccHHHhhccCceEEeCCH
Confidence            99999999999999999986

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=7.1e-21  Score=206.96  Aligned_cols=230  Identities=20%  Similarity=0.137  Sum_probs=122.3

Q ss_pred             CccEEEEecccchhhhhhhhc-----CCCCccEEEecCCCCccc----ccccccCCCcccEEEeccCCCccc----c-CC
Q 048826          455 SLKSLSVYGCSKLESIAERLD-----NNTSLEYINISNCENLKI----LPSGLHNLRQLQEITIQRCGNLES----F-PE  520 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~~~~~----~-~~  520 (725)
                      +|++|++++|.+.+..+..+.     ..++|++|++++|.....    ++..+..+++|++|++++|.....    + +.
T Consensus       171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  250 (461)
T 1z7x_W          171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG  250 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence            466666666655444333332     245666666666543321    344455566666676666542221    1 11


Q ss_pred             CCcCcCcCceeeeccccCccc----cccccCCCCCcceeecCCCCCCCCc-----cc--CCCcccccceecccchhhHHH
Q 048826          521 GGLLCAKLTRLTILDCKRLEA----LPKGLHNLTSLQQLTIGKGGELPSL-----EE--DGLPTNLHSLWIEDNMEIWKS  589 (725)
Q Consensus       521 ~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~l~~~-----~~--~~~~~~L~~L~l~~n~~~~~~  589 (725)
                      ....+++|++|++++|.....    ++..+..+++|++|++++|. +...     ..  ....++|++|++++|......
T Consensus       251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  329 (461)
T 1z7x_W          251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC  329 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence            122355677777777653322    44555566777777777763 2211     00  111247777777777644322


Q ss_pred             HhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccC-CCCCCcEEEeccCcccc-----cccccccCCcCCCe
Q 048826          590 MIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLP-LPASLTSLWISNFPNLE-----RLSSSIVDLQNLTS  663 (725)
Q Consensus       590 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~-----~i~~~~~~~~~L~~  663 (725)
                      ....+..+..+++|++|++++|.... ..+..+..     .+. ..++|+.|++++|. ++     .++..+..+++|+.
T Consensus       330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~-----~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~  402 (461)
T 1z7x_W          330 CSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQ-----GLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRE  402 (461)
T ss_dssp             HHHHHHHHHHCSSCCEEECCSSBCHH-HHHHHHHH-----HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHHHHHHhhCCCccEEEccCCcccc-ccHHHHHH-----HHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccE
Confidence            22222345667788888888742111 00110000     000 14688999998864 55     67777778899999


Q ss_pred             EeccCCCCCcccCCC-------CCcccccEEEecCCc
Q 048826          664 LYLLDCPKLRYFPEK-------GLPSSLLQLHIYRCP  693 (725)
Q Consensus       664 L~l~~c~~l~~l~~~-------~~~~~L~~L~l~~c~  693 (725)
                      |++++|+ +......       .....|+.|.+.++.
T Consensus       403 L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          403 LDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             EECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             EECCCCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence            9999874 3321110       012357778776654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.79  E-value=1.7e-20  Score=210.94  Aligned_cols=405  Identities=14%  Similarity=0.095  Sum_probs=203.3

Q ss_pred             CCccceeeeccccchhHHhh-----------hhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEE
Q 048826          227 LPKLEELEINDMKEQTYIWK-----------SHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLR  295 (725)
Q Consensus       227 ~~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~  295 (725)
                      +++|++|.+.+++.......           ....+...+++|++|++++|. ++...       +..+....++|++|+
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~-------~~~l~~~~~~L~~L~  136 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDC-------LELIAKSFKNFKVLV  136 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHH-------HHHHHHHCTTCCEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHH-------HHHHHHhCCCCcEEe
Confidence            56677777776654433211           112334566777777777753 33211       112221126777777


Q ss_pred             EecccCccc--cccccCCCCCCcEEEeecCCCccc-----cCCC-CCCCCCceEEeeccC-ccc--ccccccccCCCCcc
Q 048826          296 LRYCKGLVK--LPQSSLSLSSLREIEIYKCSSLVS-----FPEV-ALPSKLKKIQFRECD-ALK--LLPEAWMSDTNSSL  364 (725)
Q Consensus       296 L~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~-----~~~~-~~l~~L~~L~l~~~~-~~~--~~~~~~~~~~~~~L  364 (725)
                      |++|...+.  ++....++++|++|++++|. ++.     ++.. ..+++|++|++++|. .+.  .+....  ..+++|
T Consensus       137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~--~~~~~L  213 (594)
T 2p1m_B          137 LSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV--TRCPNL  213 (594)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH--HHCTTC
T ss_pred             CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH--HhCCCC
Confidence            777643332  44444567777777777765 222     1111 135677777777664 111  111111  124667


Q ss_pred             cEEEeeccCCccccccc-ccccccceEEeecCCC-ccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccc
Q 048826          365 EILSIWVCHSLTYLAGV-QLPRSLKRLVILNCDN-IRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPA  442 (725)
Q Consensus       365 ~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~  442 (725)
                      ++|++.+|..+..++.. ...++|+.|.+..+.. +..... .+...   .....++|+.+.  ++..    .....++.
T Consensus       214 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~l~~---~l~~~~~L~~Ls--~~~~----~~~~~l~~  283 (594)
T 2p1m_B          214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY-SGLSV---ALSGCKELRCLS--GFWD----AVPAYLPA  283 (594)
T ss_dssp             CEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH-HHHHH---HHHTCTTCCEEE--CCBT----CCGGGGGG
T ss_pred             cEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhH-HHHHH---HHhcCCCccccc--CCcc----cchhhHHH
Confidence            77777766444433222 3345666666554432 000000 00000   000112233331  1100    11111221


Q ss_pred             cccccccCCCCCCccEEEEecccchhhh-hhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccC--------C
Q 048826          443 TLESLEVGNLPPSLKSLSVYGCSKLESI-AERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRC--------G  513 (725)
Q Consensus       443 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~--------~  513 (725)
                      ....      .++|++|++++|...+.. ...+..+++|+.|++++|.....++.....+++|++|++.+|        .
T Consensus       284 ~~~~------~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~  357 (594)
T 2p1m_B          284 VYSV------CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV  357 (594)
T ss_dssp             GHHH------HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred             HHHh------hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence            1111      146899999888755443 334567889999999886222223333345788999988543        2


Q ss_pred             Ccccc--CCCCcCcCcCceeeeccccCcccccccc-CCCCCcceeecC-----CCCCCCCccc-------CCCcccccce
Q 048826          514 NLESF--PEGGLLCAKLTRLTILDCKRLEALPKGL-HNLTSLQQLTIG-----KGGELPSLEE-------DGLPTNLHSL  578 (725)
Q Consensus       514 ~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~-----~~~~l~~~~~-------~~~~~~L~~L  578 (725)
                      .+...  ......+++|+.|.+..+......+..+ ..+++|++|+++     +|..+...+.       ...+++|++|
T Consensus       358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L  437 (594)
T 2p1m_B          358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL  437 (594)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE
T ss_pred             CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE
Confidence            22211  1111236788888776555433333333 357888888888     4445543221       2235788888


Q ss_pred             ecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccC
Q 048826          579 WIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVD  657 (725)
Q Consensus       579 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~  657 (725)
                      +++++ .....+.   .....+++|+.|++++|......+.. +        ...+++|+.|++++|+.-..... .+..
T Consensus       438 ~L~~~-l~~~~~~---~l~~~~~~L~~L~L~~~~i~~~~~~~-l--------~~~~~~L~~L~L~~n~~~~~~~~~~~~~  504 (594)
T 2p1m_B          438 SLSGL-LTDKVFE---YIGTYAKKMEMLSVAFAGDSDLGMHH-V--------LSGCDSLRKLEIRDCPFGDKALLANASK  504 (594)
T ss_dssp             ECCSS-CCHHHHH---HHHHHCTTCCEEEEESCCSSHHHHHH-H--------HHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred             eecCc-ccHHHHH---HHHHhchhccEeeccCCCCcHHHHHH-H--------HhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence            88762 2211111   11224778888888875321111110 0        01367888888888765222222 2345


Q ss_pred             CcCCCeEeccCCCC
Q 048826          658 LQNLTSLYLLDCPK  671 (725)
Q Consensus       658 ~~~L~~L~l~~c~~  671 (725)
                      +++|+.|++++|+.
T Consensus       505 l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          505 LETMRSLWMSSCSV  518 (594)
T ss_dssp             GGGSSEEEEESSCC
T ss_pred             CCCCCEEeeeCCCC
Confidence            78888888888865

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.76  E-value=4.8e-18  Score=177.38  Aligned_cols=61  Identities=21%  Similarity=0.273  Sum_probs=41.8

Q ss_pred             ccEEEEecccchh----hhhhhhcCCCCccEEEecCCCCcccccccc-cCCCcccEEEeccCCCccc
Q 048826          456 LKSLSVYGCSKLE----SIAERLDNNTSLEYINISNCENLKILPSGL-HNLRQLQEITIQRCGNLES  517 (725)
Q Consensus       456 L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~  517 (725)
                      ++.++++++...+    .+|..+..+++|+.|++++| .++.+|..+ ..+++|++|++++|+....
T Consensus       251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            4444454444333    46777888899999999885 455777664 6788888888888765443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=1.7e-17  Score=179.42  Aligned_cols=223  Identities=17%  Similarity=0.123  Sum_probs=133.5

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      ++++.|++++|.+.+..+..+..+++|+.|++++|......+..+.++++|++|++++|......+..+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            35777777777666666666777777777777775443333455666777777777775433333334566777777777


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC  611 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~  611 (725)
                      ++|......+..+..+++|++|++++|..+..++.  ...+++|++|++++|....  +    ..+..+++|++|++++|
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~----~~~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--M----PNLTPLVGLEELEMSGN  228 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--C----CCCTTCTTCCEEECTTS
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--c----ccccccccccEEECcCC
Confidence            77764433333566777777777777655555443  3344677777777775431  1    23556677777777763


Q ss_pred             CCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCC--cccccEEEe
Q 048826          612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGL--PSSLLQLHI  689 (725)
Q Consensus       612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l  689 (725)
                        .+..++...        +..+++|+.|++++|......+..+..+++|+.|++++| .++.++...+  +++|+.|++
T Consensus       229 --~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L  297 (452)
T 3zyi_A          229 --HFPEIRPGS--------FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHL  297 (452)
T ss_dssp             --CCSEECGGG--------GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEEC
T ss_pred             --cCcccCccc--------ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEc
Confidence              222222211        235667777777775433333445566777777777774 5556555433  466777777


Q ss_pred             cCCc
Q 048826          690 YRCP  693 (725)
Q Consensus       690 ~~c~  693 (725)
                      +++|
T Consensus       298 ~~Np  301 (452)
T 3zyi_A          298 HHNP  301 (452)
T ss_dssp             CSSC
T ss_pred             cCCC
Confidence            7654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=2.7e-17  Score=177.06  Aligned_cols=219  Identities=16%  Similarity=0.186  Sum_probs=128.8

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccC-CCCcCcCcCceeee
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFP-EGGLLCAKLTRLTI  533 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l  533 (725)
                      +++.|++++|.+....+..+..+++|+.|++++|......+..+.++++|++|++++|. +..++ ..+..+++|++|++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEEC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeC
Confidence            46777777776666656666677777777777654333333456667777777777653 33333 34566667777777


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC  611 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~  611 (725)
                      ++|......+..+..+++|++|++++|..+..++.  ...+++|++|++++|....  +    ..+..+++|++|++++|
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~----~~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--I----PNLTPLIKLDELDLSGN  217 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--C----CCCTTCSSCCEEECTTS
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--c----cccCCCcccCEEECCCC
Confidence            77664433333566677777777776655554433  2334677777777764431  1    13556667777777763


Q ss_pred             CCCCccC-CCCCcccccCcccCCCCCCcEEEeccCcccccc-cccccCCcCCCeEeccCCCCCcccCCCCC--cccccEE
Q 048826          612 DDDMVSF-PPEPEDVRLGTTLPLPASLTSLWISNFPNLERL-SSSIVDLQNLTSLYLLDCPKLRYFPEKGL--PSSLLQL  687 (725)
Q Consensus       612 ~~~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L  687 (725)
                        .+..+ |..+         ..+++|+.|++++|. ++.+ +..+..+++|+.|++++| .++.++...+  +++|+.|
T Consensus       218 --~l~~~~~~~~---------~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  284 (440)
T 3zyj_A          218 --HLSAIRPGSF---------QGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERI  284 (440)
T ss_dssp             --CCCEECTTTT---------TTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEE
T ss_pred             --ccCccChhhh---------ccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEE
Confidence              33333 2222         256677777777743 4433 344566677777777774 4555555432  4667777


Q ss_pred             EecCCc
Q 048826          688 HIYRCP  693 (725)
Q Consensus       688 ~l~~c~  693 (725)
                      +++++|
T Consensus       285 ~L~~Np  290 (440)
T 3zyj_A          285 HLHHNP  290 (440)
T ss_dssp             ECCSSC
T ss_pred             EcCCCC
Confidence            776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.75  E-value=2.5e-18  Score=176.42  Aligned_cols=214  Identities=12%  Similarity=0.067  Sum_probs=105.0

Q ss_pred             CCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEE
Q 048826          289 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILS  368 (725)
Q Consensus       289 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  368 (725)
                      ++|++|+|++|.+.+..+..+..+++|++|++++|.. +..+++..+++|++|++++|. +..++.      .++|++|+
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~l~~L~~L~Ls~n~-l~~l~~------~~~L~~L~  105 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNY-VQELLV------GPSIETLH  105 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-EEEEEETTCTTCCEEECCSSE-EEEEEE------CTTCCEEE
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-CcchhhhhcCCCCEEECcCCc-cccccC------CCCcCEEE
Confidence            5667777766666555555666677777777776653 333335556666666666654 222221      14555555


Q ss_pred             eeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccc
Q 048826          369 IWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLE  448 (725)
Q Consensus       369 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~  448 (725)
                      +++|. ++.++.. .+++                                 |++|+++++ .++. .....+..      
T Consensus       106 l~~n~-l~~~~~~-~~~~---------------------------------L~~L~l~~N-~l~~-~~~~~~~~------  142 (317)
T 3o53_A          106 AANNN-ISRVSCS-RGQG---------------------------------KKNIYLANN-KITM-LRDLDEGC------  142 (317)
T ss_dssp             CCSSC-CSEEEEC-CCSS---------------------------------CEEEECCSS-CCCS-GGGBCTGG------
T ss_pred             CCCCc-cCCcCcc-ccCC---------------------------------CCEEECCCC-CCCC-ccchhhhc------
Confidence            55442 1111100 0111                                 223322221 1111 00000000      


Q ss_pred             cCCCCCCccEEEEecccchhhhhhhh-cCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCc
Q 048826          449 VGNLPPSLKSLSVYGCSKLESIAERL-DNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAK  527 (725)
Q Consensus       449 ~~~~~~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  527 (725)
                          .++|+.|++++|.+.+..+..+ ..+++|++|++++|. ++.++. ...+++|++|++++|. +..+|..+..+++
T Consensus       143 ----l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~  215 (317)
T 3o53_A          143 ----RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAG  215 (317)
T ss_dssp             ----GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTT
T ss_pred             ----cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCCc-CCcchhhhcccCc
Confidence                0246666666665555444444 245666666666643 333332 2235666666666643 3344444555666


Q ss_pred             CceeeeccccCccccccccCCCCCcceeecCCCC
Q 048826          528 LTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       528 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  561 (725)
                      |+.|++++|. ++.+|..+..+++|+.|++++|.
T Consensus       216 L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          216 VTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred             ccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence            6666666665 33455555566666666666653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.74  E-value=8.6e-17  Score=178.23  Aligned_cols=256  Identities=23%  Similarity=0.226  Sum_probs=169.9

Q ss_pred             CCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCCC
Q 048826           30 KNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPC  109 (725)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~  109 (725)
                      .+++.|+++++....+|..+.    ++|++|++++| .++.+|.  .+++|++|++++|. ++.+|.         .+++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---------~l~~  102 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV---------LPPG  102 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC----TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC---------CCTT
T ss_pred             CCCcEEEecCCCcCccChhhC----CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC---------CCCC
Confidence            579999999999999987663    79999999998 7888988  68999999999997 888875         2889


Q ss_pred             cceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecC
Q 048826          110 LETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYG  189 (725)
Q Consensus       110 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~  189 (725)
                      |++|+++++ +++..     +   ..+++|++|++++| +++ .+|..+++|++|++++|... ..-..+++|+.|++++
T Consensus       103 L~~L~Ls~N-~l~~l-----~---~~l~~L~~L~L~~N-~l~-~lp~~l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~  170 (622)
T 3g06_A          103 LLELSIFSN-PLTHL-----P---ALPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQLA-SLPALPSELCKLWAYN  170 (622)
T ss_dssp             CCEEEECSC-CCCCC-----C---CCCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCS
T ss_pred             CCEEECcCC-cCCCC-----C---CCCCCcCEEECCCC-CCC-cCCCCCCCCCEEECcCCcCC-CcCCccCCCCEEECCC
Confidence            999999985 45543     1   25789999999988 676 78888889999999887532 1112456788888887


Q ss_pred             CCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCc
Q 048826          190 CKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKL  269 (725)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  269 (725)
                      |....+                            +..+++|+.|.+.++.-..    ++    ..+++|+.|++++| .+
T Consensus       171 N~l~~l----------------------------~~~~~~L~~L~Ls~N~l~~----l~----~~~~~L~~L~L~~N-~l  213 (622)
T 3g06_A          171 NQLTSL----------------------------PMLPSGLQELSVSDNQLAS----LP----TLPSELYKLWAYNN-RL  213 (622)
T ss_dssp             SCCSCC----------------------------CCCCTTCCEEECCSSCCSC----CC----CCCTTCCEEECCSS-CC
T ss_pred             CCCCCC----------------------------cccCCCCcEEECCCCCCCC----CC----CccchhhEEECcCC-cc
Confidence            764331                            2234556666555543211    11    22456666666664 44


Q ss_pred             ccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcc
Q 048826          270 QSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDAL  349 (725)
Q Consensus       270 ~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  349 (725)
                      +.++..            +++|+.|++++|.+. .+|   ..+++|+.|++++|. ++.++.  .+++|+.|++++|. +
T Consensus       214 ~~l~~~------------~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~-L~~lp~--~~~~L~~L~Ls~N~-L  273 (622)
T 3g06_A          214 TSLPAL------------PSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNR-LTSLPM--LPSGLLSLSVYRNQ-L  273 (622)
T ss_dssp             SSCCCC------------CTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-C
T ss_pred             cccCCC------------CCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCC-CCcCCc--ccccCcEEeCCCCC-C
Confidence            444321            156666666666553 344   344666666666663 444544  45666666666664 3


Q ss_pred             cccccccccCCCCcccEEEeeccC
Q 048826          350 KLLPEAWMSDTNSSLEILSIWVCH  373 (725)
Q Consensus       350 ~~~~~~~~~~~~~~L~~L~l~~~~  373 (725)
                      ..+|..+.  .+++|+.|++.+|+
T Consensus       274 ~~lp~~l~--~l~~L~~L~L~~N~  295 (622)
T 3g06_A          274 TRLPESLI--HLSSETTVNLEGNP  295 (622)
T ss_dssp             CSCCGGGG--GSCTTCEEECCSCC
T ss_pred             CcCCHHHh--hccccCEEEecCCC
Confidence            45554432  33566666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.74  E-value=1.1e-17  Score=174.75  Aligned_cols=80  Identities=11%  Similarity=-0.001  Sum_probs=48.4

Q ss_pred             cCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC--C
Q 048826          255 ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--V  332 (725)
Q Consensus       255 ~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~  332 (725)
                      ++.....+.++ ..++.+|..           ++++|++|++++|.+.+..+..+..+++|++|++++|. ++.++.  +
T Consensus        30 C~~~~~c~~~~-~~l~~iP~~-----------~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~   96 (353)
T 2z80_A           30 CDRNGICKGSS-GSLNSIPSG-----------LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSF   96 (353)
T ss_dssp             ECTTSEEECCS-TTCSSCCTT-----------CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred             CCCCeEeeCCC-CCccccccc-----------ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhc
Confidence            34444455555 456666543           12678888888877654444467778888888887775 344332  4


Q ss_pred             CCCCCCceEEeeccC
Q 048826          333 ALPSKLKKIQFRECD  347 (725)
Q Consensus       333 ~~l~~L~~L~l~~~~  347 (725)
                      ..+++|++|++++|.
T Consensus        97 ~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           97 SSLGSLEHLDLSYNY  111 (353)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             CCCCCCCEEECCCCc
Confidence            446666666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=1e-17  Score=169.29  Aligned_cols=221  Identities=18%  Similarity=0.205  Sum_probs=142.2

Q ss_pred             ceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCc
Q 048826           33 KQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCL  110 (725)
Q Consensus        33 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  110 (725)
                      +.++.++.+...+|..+    .++|++|++++| .++.++.  ++.+++|++|++++|. ++.+++..+     ..+++|
T Consensus        14 ~~~~c~~~~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L   82 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI----PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LARIDAAAF-----TGLALL   82 (285)
T ss_dssp             CEEECCSSCCSSCCTTC----CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTT-----TTCTTC
T ss_pred             eEEEcCcCCcccCCcCC----CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCc-cceeCHhhc-----CCccCC
Confidence            56777777777777544    468999999987 7777774  8889999999999886 676654433     337888


Q ss_pred             ceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCC
Q 048826          111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGC  190 (725)
Q Consensus       111 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~  190 (725)
                      ++|+++++..+....    +..+..+++|++|++++| .+++..|                  ..+..+++|++|++++|
T Consensus        83 ~~L~l~~n~~l~~~~----~~~~~~l~~L~~L~l~~n-~l~~~~~------------------~~~~~l~~L~~L~l~~n  139 (285)
T 1ozn_A           83 EQLDLSDNAQLRSVD----PATFHGLGRLHTLHLDRC-GLQELGP------------------GLFRGLAALQYLYLQDN  139 (285)
T ss_dssp             CEEECCSCTTCCCCC----TTTTTTCTTCCEEECTTS-CCCCCCT------------------TTTTTCTTCCEEECCSS
T ss_pred             CEEeCCCCCCccccC----HHHhcCCcCCCEEECCCC-cCCEECH------------------hHhhCCcCCCEEECCCC
Confidence            888888865465553    455677888888888887 4442222                  23555666777777766


Q ss_pred             CceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcc
Q 048826          191 KKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQ  270 (725)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  270 (725)
                      .....                                                    +...+..+++|++|+++++ .++
T Consensus       140 ~l~~~----------------------------------------------------~~~~~~~l~~L~~L~l~~n-~l~  166 (285)
T 1ozn_A          140 ALQAL----------------------------------------------------PDDTFRDLGNLTHLFLHGN-RIS  166 (285)
T ss_dssp             CCCCC----------------------------------------------------CTTTTTTCTTCCEEECCSS-CCC
T ss_pred             ccccc----------------------------------------------------CHhHhccCCCccEEECCCC-ccc
Confidence            53221                                                    1112345566666666664 455


Q ss_pred             cchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC--CCCCCCCceEEeeccCc
Q 048826          271 SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKKIQFRECDA  348 (725)
Q Consensus       271 ~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~l~~~~~  348 (725)
                      .++...    +..+    ++|++|++++|.+.+..|..+..+++|+.|++++|. ++.++.  +..+++|+.|++++|+.
T Consensus       167 ~~~~~~----~~~l----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          167 SVPERA----FRGL----HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             EECTTT----TTTC----TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccCHHH----hcCc----cccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCc
Confidence            544321    2233    667777777776655556667777777777777764 333332  34466777777776654


Q ss_pred             c
Q 048826          349 L  349 (725)
Q Consensus       349 ~  349 (725)
                      .
T Consensus       238 ~  238 (285)
T 1ozn_A          238 V  238 (285)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=2.2e-16  Score=175.06  Aligned_cols=155  Identities=24%  Similarity=0.248  Sum_probs=80.5

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      +|++|++++|.+.+ ++.   .+++|+.|++++| .+..+|   ..+++|+.|++++|. +..+|..   +++|+.|+++
T Consensus       142 ~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~  209 (622)
T 3g06_A          142 GLQELSVSDNQLAS-LPA---LPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQ-LASLPTL---PSELYKLWAY  209 (622)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECC
T ss_pred             CCCEEECcCCcCCC-cCC---ccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCC-CCCCCCc---cchhhEEECc
Confidence            36666666664433 221   2456777777663 444455   345677777777743 3445432   3567777777


Q ss_pred             cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCC
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDD  614 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  614 (725)
                      +|. +..+|.   .+++|++|++++| .+..++  ..+++|++|++++|....  +      ...+++|+.|++++|  .
T Consensus       210 ~N~-l~~l~~---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~L~~--l------p~~~~~L~~L~Ls~N--~  272 (622)
T 3g06_A          210 NNR-LTSLPA---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNRLTS--L------PMLPSGLLSLSVYRN--Q  272 (622)
T ss_dssp             SSC-CSSCCC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSCCSC--C------CCCCTTCCEEECCSS--C
T ss_pred             CCc-ccccCC---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCCCCc--C------CcccccCcEEeCCCC--C
Confidence            765 334443   2356677777666 333333  334566666666663321  0      013445555555552  2


Q ss_pred             CccCCCCCcccccCcccCCCCCCcEEEeccCcc
Q 048826          615 MVSFPPEPEDVRLGTTLPLPASLTSLWISNFPN  647 (725)
Q Consensus       615 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  647 (725)
                      +..+|..+.         .+++|+.|++++|+.
T Consensus       273 L~~lp~~l~---------~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          273 LTRLPESLI---------HLSSETTVNLEGNPL  296 (622)
T ss_dssp             CCSCCGGGG---------GSCTTCEEECCSCCC
T ss_pred             CCcCCHHHh---------hccccCEEEecCCCC
Confidence            334443332         345555555555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.73  E-value=9.1e-17  Score=172.96  Aligned_cols=200  Identities=18%  Similarity=0.187  Sum_probs=151.8

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      ++|+.|+|++|.+....+..+..+++|++|++++| .++.++. .+..+++|++|++++|......+..+..+++|++|+
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  166 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD  166 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence            46999999998887777788888999999999986 4555544 578889999999998765444445677888999999


Q ss_pred             eccccCcccccc-ccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826          533 ILDCKRLEALPK-GLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC  611 (725)
Q Consensus       533 l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~  611 (725)
                      +++|.....++. .+..+++|++|++++| .+..++....+++|++|++++|....  +  .+..+..+++|++|+++++
T Consensus       167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~--~--~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          167 LGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSA--I--RPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             CCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCE--E--CTTTTTTCTTCCEEECTTC
T ss_pred             CCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCc--c--ChhhhccCccCCEEECCCC
Confidence            999777776665 5788899999999998 45566666777899999999986432  1  1256788899999999883


Q ss_pred             CCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCC
Q 048826          612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCP  670 (725)
Q Consensus       612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~  670 (725)
                        .+..++...        +..+++|+.|++++| .++.++. .+..+++|+.|++++||
T Consensus       242 --~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          242 --QIQVIERNA--------FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             --CCCEECTTS--------STTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             --ceeEEChhh--------hcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence              444444332        236789999999995 5666664 45678999999998865

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=2.1e-17  Score=179.50  Aligned_cols=84  Identities=13%  Similarity=0.038  Sum_probs=58.7

Q ss_pred             HhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCC
Q 048826          281 QQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDT  360 (725)
Q Consensus       281 l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  360 (725)
                      +..+...+++|++|+|++|.+.+..|..++.+++|++|+|++|. ++..+++..+++|++|++++|. +..++..     
T Consensus        26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~-----   98 (487)
T 3oja_A           26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVG-----   98 (487)
T ss_dssp             HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEEC-----
T ss_pred             HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCCC-----
Confidence            33443334689999999988877667788999999999999886 4444446678888888888875 3333321     


Q ss_pred             CCcccEEEeecc
Q 048826          361 NSSLEILSIWVC  372 (725)
Q Consensus       361 ~~~L~~L~l~~~  372 (725)
                       ++|+.|++++|
T Consensus        99 -~~L~~L~L~~N  109 (487)
T 3oja_A           99 -PSIETLHAANN  109 (487)
T ss_dssp             -TTCCEEECCSS
T ss_pred             -CCcCEEECcCC
Confidence             55666666655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.72  E-value=1e-16  Score=173.28  Aligned_cols=200  Identities=22%  Similarity=0.229  Sum_probs=152.8

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      ++|+.|++++|.+.+..+..+..+++|++|++++|. +..+| ..+..+++|++|++++|......+..+..+++|+.|+
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  177 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD  177 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence            469999999998887777888899999999999865 45554 4477899999999999765444444677889999999


Q ss_pred             eccccCcccccc-ccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826          533 ILDCKRLEALPK-GLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC  611 (725)
Q Consensus       533 l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~  611 (725)
                      +++|..++.++. .+..+++|++|++++| .+..++....+++|++|++++|....  +  .+..+..+++|+.|++++|
T Consensus       178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~--~--~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          178 LGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPE--I--RPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             CCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSE--E--CGGGGTTCTTCCEEECTTS
T ss_pred             CCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCcCcc--c--CcccccCccCCCEEEeCCC
Confidence            999877777765 5788999999999998 45556666777899999999996542  1  1246788999999999984


Q ss_pred             CCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCC
Q 048826          612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCP  670 (725)
Q Consensus       612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~  670 (725)
                        .+..++...        +..+++|+.|++++| .++.++. .+..+++|+.|++++||
T Consensus       253 --~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          253 --QVSLIERNA--------FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             --CCCEECTTT--------TTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             --cCceECHHH--------hcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence              333333322        236789999999995 5666664 45678999999999875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.71  E-value=1.1e-16  Score=161.73  Aligned_cols=202  Identities=21%  Similarity=0.209  Sum_probs=151.3

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCcccc-CCCCcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESF-PEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~  532 (725)
                      +++++|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|..+..+ +..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            46999999999888777778899999999999996544444777889999999999998756666 66788899999999


Q ss_pred             eccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      +++|......+..+..+++|++|++++|. +..++.  ...+++|++|++++|....  ++.  ..+..+++|+.|++++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~--~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS--VPE--RAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE--ECT--TTTTTCTTCCEEECCS
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc--cCH--HHhcCccccCEEECCC
Confidence            99998666567778899999999999984 333332  3456889999998885431  111  3467788888888888


Q ss_pred             CCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCCC
Q 048826          611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCPK  671 (725)
Q Consensus       611 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~  671 (725)
                      | ......|..+         ..+++|+.|++++| .++.++. .+..+++|+.|++++|+.
T Consensus       187 n-~l~~~~~~~~---------~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          187 N-RVAHVHPHAF---------RDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             S-CCCEECTTTT---------TTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             C-cccccCHhHc---------cCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence            4 2222334443         25788888888885 4555553 467788888888888653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=9.8e-17  Score=163.87  Aligned_cols=224  Identities=16%  Similarity=0.066  Sum_probs=153.8

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcc--cccccccCCCcccEEEeccCCCccccCCCCcCcCcCcee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLK--ILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRL  531 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  531 (725)
                      +++++|++++|.+.+..+..+..+++|++|++++|....  ..+..+..+++|++|++++|. +..+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEE
Confidence            358888888887765545557888889999988864332  124556678888999998864 45666667778889999


Q ss_pred             eeccccCccccc-cccCCCCCcceeecCCCCCCCCccc-CCCcccccceecccchhhHHHHhhccccccccCCCcEEEee
Q 048826          532 TILDCKRLEALP-KGLHNLTSLQQLTIGKGGELPSLEE-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTII  609 (725)
Q Consensus       532 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~  609 (725)
                      ++++|......+ ..+..+++|++|++++|......+. ...+++|++|++++|......   .+..+..+++|++|+++
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls  183 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLS  183 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECT
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc---chhHHhhCcCCCEEECC
Confidence            998887443322 4678888899999988853322222 344588999999888653211   22567788899999998


Q ss_pred             cCCCCCccC-CCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCCCCcccCCCC--Cccccc
Q 048826          610 NCDDDMVSF-PPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCPKLRYFPEKG--LPSSLL  685 (725)
Q Consensus       610 ~~~~~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~  685 (725)
                      +|  .+..+ |..+         ..+++|+.|++++|. +..++. .+..+++|+.|++++|+.....+...  ++++|+
T Consensus       184 ~n--~l~~~~~~~~---------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~  251 (306)
T 2z66_A          184 QC--QLEQLSPTAF---------NSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  251 (306)
T ss_dssp             TS--CCCEECTTTT---------TTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred             CC--CcCCcCHHHh---------cCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence            84  33333 3333         267899999999854 555543 56778999999999875433333321  235899


Q ss_pred             EEEecCCc
Q 048826          686 QLHIYRCP  693 (725)
Q Consensus       686 ~L~l~~c~  693 (725)
                      +|++++++
T Consensus       252 ~L~L~~N~  259 (306)
T 2z66_A          252 FLNLTQND  259 (306)
T ss_dssp             EEECTTCC
T ss_pred             EEEccCCC
Confidence            99998875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=1.3e-16  Score=162.96  Aligned_cols=225  Identities=17%  Similarity=0.117  Sum_probs=119.7

Q ss_pred             CCccEEEEecccCcccccc-ccCCCCCCcEEEeecCCCcccc----CCCCCCCCCceEEeeccCcccccccccccCCCCc
Q 048826          289 CRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIEIYKCSSLVSF----PEVALPSKLKKIQFRECDALKLLPEAWMSDTNSS  363 (725)
Q Consensus       289 ~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  363 (725)
                      ++|++|++++|.+. .+|. .++.+++|++|++++|.. +..    .....+++|++|++++|. +..++..+  ..+++
T Consensus        28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~--~~l~~  102 (306)
T 2z66_A           28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF--LGLEQ  102 (306)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE--ETCTT
T ss_pred             CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEECCCCc-cccChhhc--CCCCC
Confidence            67888888888764 4444 467888888888888753 322    122336777888877775 33344332  23356


Q ss_pred             ccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCcccc
Q 048826          364 LEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPAT  443 (725)
Q Consensus       364 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~  443 (725)
                      |++|++++|. ++.++..                                                        ..+.. 
T Consensus       103 L~~L~l~~n~-l~~~~~~--------------------------------------------------------~~~~~-  124 (306)
T 2z66_A          103 LEHLDFQHSN-LKQMSEF--------------------------------------------------------SVFLS-  124 (306)
T ss_dssp             CCEEECTTSE-EESSTTT--------------------------------------------------------TTTTT-
T ss_pred             CCEEECCCCc-ccccccc--------------------------------------------------------hhhhh-
Confidence            6666665542 1111000                                                        00000 


Q ss_pred             ccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcc-cccccccCCCcccEEEeccCCCccccCCCC
Q 048826          444 LESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLK-ILPSGLHNLRQLQEITIQRCGNLESFPEGG  522 (725)
Q Consensus       444 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~  522 (725)
                              + ++|+.|++++|...+..+..+..+++|++|++++|.... .+|..+..+++|++|++++|......|..+
T Consensus       125 --------l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  195 (306)
T 2z66_A          125 --------L-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF  195 (306)
T ss_dssp             --------C-TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             --------c-cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence                    0 235555555555555555555556666666666643332 245555566666666666654444445555


Q ss_pred             cCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCccc-CC-Ccccccceecccchh
Q 048826          523 LLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE-DG-LPTNLHSLWIEDNME  585 (725)
Q Consensus       523 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~-~~~~L~~L~l~~n~~  585 (725)
                      ..+++|++|++++|......+..+..+++|++|++++|......+. .. .+++|++|++++|+.
T Consensus       196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            5566666666666654333333455566666666666633222111 11 224666666666643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.70  E-value=2.3e-17  Score=169.25  Aligned_cols=260  Identities=13%  Similarity=0.116  Sum_probs=183.7

Q ss_pred             eeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCC
Q 048826          232 ELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLS  311 (725)
Q Consensus       232 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~  311 (725)
                      .+.+.++..... .......+..+++|++|++++| .++.+++.    .+..+    ++|++|+|++|.+.+..+  +..
T Consensus        11 ~l~i~~ls~~~l-~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n~l~~~~~--~~~   78 (317)
T 3o53_A           11 RYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGN-PLSQISAA----DLAPF----TKLELLNLSSNVLYETLD--LES   78 (317)
T ss_dssp             EEEEESCCTTTH-HHHHHHHHTTGGGCSEEECTTS-CCCCCCHH----HHTTC----TTCCEEECTTSCCEEEEE--ETT
T ss_pred             ceeEeeccccch-hhhHHHHhccCCCCCEEECcCC-ccCcCCHH----HhhCC----CcCCEEECCCCcCCcchh--hhh
Confidence            345555555444 3345566677889999999996 67766553    25555    899999999999865444  889


Q ss_pred             CCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCccccccc--ccccccce
Q 048826          312 LSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGV--QLPRSLKR  389 (725)
Q Consensus       312 l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~  389 (725)
                      +++|++|++++|. ++.++.   .++|++|++++|.. ..++..    .+++|++|++++|. ++.+...  ..+++|+.
T Consensus        79 l~~L~~L~Ls~n~-l~~l~~---~~~L~~L~l~~n~l-~~~~~~----~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~  148 (317)
T 3o53_A           79 LSTLRTLDLNNNY-VQELLV---GPSIETLHAANNNI-SRVSCS----RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQY  148 (317)
T ss_dssp             CTTCCEEECCSSE-EEEEEE---CTTCCEEECCSSCC-SEEEEC----CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEE
T ss_pred             cCCCCEEECcCCc-cccccC---CCCcCEEECCCCcc-CCcCcc----ccCCCCEEECCCCC-CCCccchhhhccCCCCE
Confidence            9999999999985 555542   48999999999874 333322    35789999999984 3333221  22344454


Q ss_pred             EEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhh
Q 048826          390 LVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLES  469 (725)
Q Consensus       390 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  469 (725)
                      |+++++.                                  +.. .....+...         .++|++|++++|.+.+.
T Consensus       149 L~Ls~N~----------------------------------l~~-~~~~~~~~~---------l~~L~~L~L~~N~l~~~  184 (317)
T 3o53_A          149 LDLKLNE----------------------------------IDT-VNFAELAAS---------SDTLEHLNLQYNFIYDV  184 (317)
T ss_dssp             EECTTSC----------------------------------CCE-EEGGGGGGG---------TTTCCEEECTTSCCCEE
T ss_pred             EECCCCC----------------------------------CCc-ccHHHHhhc---------cCcCCEEECCCCcCccc
Confidence            5444432                                  221 111111100         13599999999977655


Q ss_pred             hhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCc-cccccccCC
Q 048826          470 IAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRL-EALPKGLHN  548 (725)
Q Consensus       470 ~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~  548 (725)
                       + ....+++|+.|++++| .+..+|..+..+++|++|++++| .+..+|..+..+++|+.|++++|+.. ..++..+..
T Consensus       185 -~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~  260 (317)
T 3o53_A          185 -K-GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (317)
T ss_dssp             -E-CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred             -c-cccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence             2 3345899999999995 56677777889999999999996 45678888889999999999999976 566777788


Q ss_pred             CCCcceeecCCCC
Q 048826          549 LTSLQQLTIGKGG  561 (725)
Q Consensus       549 l~~L~~L~l~~~~  561 (725)
                      +++|+.++++++.
T Consensus       261 ~~~L~~l~l~~~~  273 (317)
T 3o53_A          261 NQRVQTVAKQTVK  273 (317)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             cccceEEECCCch
Confidence            8888888887653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=5.5e-16  Score=151.98  Aligned_cols=201  Identities=17%  Similarity=0.174  Sum_probs=136.8

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccC-CCCcCcCcCcee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFP-EGGLLCAKLTRL  531 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L  531 (725)
                      ++++.|++++|.+.+..+..+..+++|++|++++|..++.++. .+.++++|++|++++|+.+..++ ..+..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            3599999999987777666888899999999998765666654 57788999999999855555555 456778889999


Q ss_pred             eeccccCccccccccCCCCCcc---eeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCc-EEE
Q 048826          532 TILDCKRLEALPKGLHNLTSLQ---QLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLR-RLT  607 (725)
Q Consensus       532 ~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~-~L~  607 (725)
                      ++++|.. +.+|. +..+++|+   +|++++|..+..++.                          ..+..+++|+ .|+
T Consensus       111 ~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--------------------------~~~~~l~~L~~~L~  162 (239)
T 2xwt_C          111 GIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPV--------------------------NAFQGLCNETLTLK  162 (239)
T ss_dssp             EEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECT--------------------------TTTTTTBSSEEEEE
T ss_pred             eCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCc--------------------------ccccchhcceeEEE
Confidence            9988874 44665 66667776   777777744443322                          2344566666 666


Q ss_pred             eecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCC-cCCCeEeccCCCCCcccCCCCCccccc
Q 048826          608 IINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDL-QNLTSLYLLDCPKLRYFPEKGLPSSLL  685 (725)
Q Consensus       608 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~  685 (725)
                      +++  +.+..+|....         ..++|+.|++++|..++.++. .+..+ ++|+.|++++ +.++.+|.. .+++|+
T Consensus       163 l~~--n~l~~i~~~~~---------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~  229 (239)
T 2xwt_C          163 LYN--NGFTSVQGYAF---------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLK  229 (239)
T ss_dssp             CCS--CCCCEECTTTT---------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCS
T ss_pred             cCC--CCCcccCHhhc---------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCc
Confidence            665  33345555432         126778888887645666653 45666 7888888887 456666654 467788


Q ss_pred             EEEecCCchh
Q 048826          686 QLHIYRCPLI  695 (725)
Q Consensus       686 ~L~l~~c~~l  695 (725)
                      .|++++++.|
T Consensus       230 ~L~l~~~~~l  239 (239)
T 2xwt_C          230 ELIARNTWTL  239 (239)
T ss_dssp             EEECTTC---
T ss_pred             eeeccCccCC
Confidence            8888777653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.67  E-value=1.5e-16  Score=162.73  Aligned_cols=221  Identities=17%  Similarity=0.101  Sum_probs=151.0

Q ss_pred             ccEEEEecccch-hhhhhhhc-------CCCCccEEEecCCCCcccccccc--cCCCcccEEEeccCCCccccCCCCcCc
Q 048826          456 LKSLSVYGCSKL-ESIAERLD-------NNTSLEYINISNCENLKILPSGL--HNLRQLQEITIQRCGNLESFPEGGLLC  525 (725)
Q Consensus       456 L~~L~L~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l  525 (725)
                      |+.|++++|.+. ..++..+.       .+++|++|++++|.....+|..+  ..+++|++|++++|.... +|..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS-SSSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc-hhHHHHHH
Confidence            666666666552 22333333       67888888888876665677765  778888888888865443 36555554


Q ss_pred             -----CcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCc---ccC--CCcccccceecccchhhHH-HHhhcc
Q 048826          526 -----AKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSL---EED--GLPTNLHSLWIEDNMEIWK-SMIERG  594 (725)
Q Consensus       526 -----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~--~~~~~L~~L~l~~n~~~~~-~~~~~~  594 (725)
                           ++|++|++++|......+..+..+++|++|++++|......   +..  ..+++|++|++++|..... .+..  
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--  221 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS--  221 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH--
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH--
Confidence                 78888998888866555577888888999999888543321   122  4568889999988865411 1111  


Q ss_pred             ccccccCCCcEEEeecCCCCCccCC-CCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCc
Q 048826          595 RGFHRFSSLRRLTIINCDDDMVSFP-PEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLR  673 (725)
Q Consensus       595 ~~~~~l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~  673 (725)
                      ..+..+++|++|++++|  .+...+ ...        +..+++|+.|++++| .++.+|..+.  ++|+.|++++| +++
T Consensus       222 ~~~~~l~~L~~L~Ls~N--~l~~~~~~~~--------~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~  287 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHN--SLRDAAGAPS--------CDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLD  287 (312)
T ss_dssp             HHHHTTCCCSEEECTTS--CCCSSCCCSC--------CCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCC
T ss_pred             HHHhcCCCCCEEECCCC--cCCcccchhh--------hhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCC
Confidence            33456789999999984  333322 221        125689999999994 5778887554  89999999985 677


Q ss_pred             ccCCCCCcccccEEEecCCc
Q 048826          674 YFPEKGLPSSLLQLHIYRCP  693 (725)
Q Consensus       674 ~l~~~~~~~~L~~L~l~~c~  693 (725)
                      .+|....+++|++|++++++
T Consensus       288 ~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          288 RNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             SCCCTTTSCEEEEEECTTCT
T ss_pred             CChhHhhCCCCCEEeccCCC
Confidence            77765557889999988865

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.64  E-value=1.4e-15  Score=152.78  Aligned_cols=201  Identities=15%  Similarity=0.096  Sum_probs=147.2

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      +++++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46999999999887777778899999999999996544333446888999999999997765555667888999999999


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCC-Ccc-cCCCcccccceecccchhhHHHHhhccccccccCCCc----EEE
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELP-SLE-EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLR----RLT  607 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~----~L~  607 (725)
                      ++|......+..+..+++|++|++++|.... .++ ....+++|++|++++|....  +..  ..+..+++|+    .|+
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~--~~~--~~~~~l~~L~~l~l~L~  183 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYC--TDLRVLHQMPLLNLSLD  183 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE--ECG--GGGHHHHTCTTCCEEEE
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc--CCH--HHhhhhhhccccceeee
Confidence            9998655445568899999999999985322 122 34456899999999986532  111  2345555555    788


Q ss_pred             eecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccccc-ccCCcCCCeEeccCCC
Q 048826          608 IINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSS-IVDLQNLTSLYLLDCP  670 (725)
Q Consensus       608 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~c~  670 (725)
                      +++  +.+..++....         ...+|+.|++++| .++.++.. +..+++|+.|++++|+
T Consensus       184 ls~--n~l~~~~~~~~---------~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          184 LSL--NPMNFIQPGAF---------KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CCS--SCCCEECTTSS---------CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             cCC--CcccccCcccc---------CCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence            887  44555555442         3358999999985 47777654 4678899999998865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=4.2e-15  Score=145.63  Aligned_cols=214  Identities=17%  Similarity=0.183  Sum_probs=131.2

Q ss_pred             eEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCcc
Q 048826           34 QFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLE  111 (725)
Q Consensus        34 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~  111 (725)
                      .+++.+.....+|. +    -.+|++|++++| .++.+|+  ++.+++|++|++++|..++.++...++     .+++|+
T Consensus        15 ~~~v~c~~l~~ip~-~----~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~-----~l~~L~   83 (239)
T 2xwt_C           15 DFRVTCKDIQRIPS-L----PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY-----NLSKVT   83 (239)
T ss_dssp             TTEEEECSCSSCCC-C----CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE-----SCTTCC
T ss_pred             cceeEccCccccCC-C----CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC-----CCcCCc
Confidence            34445545666666 3    247888888887 6777765  778888888888888657777764332     267888


Q ss_pred             eeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCccc---EEEec
Q 048826          112 TLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALC---KLKIY  188 (725)
Q Consensus       112 ~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~---~L~l~  188 (725)
                      +|+++++++++...    +..+..+++|++|++++| .++ .+|.                   +..+++|+   .|+++
T Consensus        84 ~L~l~~~n~l~~i~----~~~f~~l~~L~~L~l~~n-~l~-~lp~-------------------~~~l~~L~~L~~L~l~  138 (239)
T 2xwt_C           84 HIEIRNTRNLTYID----PDALKELPLLKFLGIFNT-GLK-MFPD-------------------LTKVYSTDIFFILEIT  138 (239)
T ss_dssp             EEEEEEETTCCEEC----TTSEECCTTCCEEEEEEE-CCC-SCCC-------------------CTTCCBCCSEEEEEEE
T ss_pred             EEECCCCCCeeEcC----HHHhCCCCCCCEEeCCCC-CCc-cccc-------------------cccccccccccEEECC
Confidence            88887765666653    344567788888888777 444 3432                   22233333   66666


Q ss_pred             CC-CceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCc-EEEEccC
Q 048826          189 GC-KKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLK-RLTIDSC  266 (725)
Q Consensus       189 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~  266 (725)
                      +| ....                                                    .+...+..+++|+ +|+++++
T Consensus       139 ~N~~l~~----------------------------------------------------i~~~~~~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C          139 DNPYMTS----------------------------------------------------IPVNAFQGLCNETLTLKLYNN  166 (239)
T ss_dssp             SCTTCCE----------------------------------------------------ECTTTTTTTBSSEEEEECCSC
T ss_pred             CCcchhh----------------------------------------------------cCcccccchhcceeEEEcCCC
Confidence            66 3222                                                    1122235566777 7777764


Q ss_pred             CCcccchhhhhhHHHhhhhhccCCccEEEEeccc-CccccccccCCC-CCCcEEEeecCCCccccCCCCCCCCCceEEee
Q 048826          267 PKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCK-GLVKLPQSSLSL-SSLREIEIYKCSSLVSFPEVALPSKLKKIQFR  344 (725)
Q Consensus       267 ~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~  344 (725)
                       .++.++...+.     .    ++|+.|++++|+ +....+..+..+ ++|+.|++++|. ++.++.. .+++|+.|++.
T Consensus       167 -~l~~i~~~~~~-----~----~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~-~~~~L~~L~l~  234 (239)
T 2xwt_C          167 -GFTSVQGYAFN-----G----TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK-GLEHLKELIAR  234 (239)
T ss_dssp             -CCCEECTTTTT-----T----CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT-TCTTCSEEECT
T ss_pred             -CCcccCHhhcC-----C----CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh-HhccCceeecc
Confidence             45555543211     1    467777887775 433334456777 778888887764 4455443 56677777776


Q ss_pred             ccC
Q 048826          345 ECD  347 (725)
Q Consensus       345 ~~~  347 (725)
                      ++.
T Consensus       235 ~~~  237 (239)
T 2xwt_C          235 NTW  237 (239)
T ss_dssp             TC-
T ss_pred             Ccc
Confidence            654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=6.2e-15  Score=153.28  Aligned_cols=221  Identities=19%  Similarity=0.176  Sum_probs=165.7

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCcccc-CCCCcCcCcCcee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESF-PEGGLLCAKLTRL  531 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L  531 (725)
                      +++++|+|++|.+....+.+|..+++|++|++++|...+.+|. .+.++++++++...+++.+..+ |..+..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            4699999999987765566789999999999999877776764 4677888887665555566665 5567888999999


Q ss_pred             eeccccCccccccccCCCCCcceeecCCCCCCCCccc---CCCcccccceecccchhhHHHHhhccccccccCCCcEEEe
Q 048826          532 TILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE---DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI  608 (725)
Q Consensus       532 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l  608 (725)
                      ++++|......+..+....++..+++.++..+..++.   .+....++.|++++|....  +   +.......+|++|++
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i---~~~~f~~~~L~~l~l  184 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--I---HNSAFNGTQLDELNL  184 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--E---CTTSSTTEEEEEEEC
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--C---ChhhccccchhHHhh
Confidence            9999985443334455666788888887766665543   3334678899999986531  1   123345568899999


Q ss_pred             ecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEE
Q 048826          609 INCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLH  688 (725)
Q Consensus       609 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~  688 (725)
                      .+ ++.+..+|...        |..+++|+.|++++ +.++.+|.  ..|.+|+.|.+.+|+.++.+|....+++|+.++
T Consensus       185 ~~-~n~l~~i~~~~--------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~  252 (350)
T 4ay9_X          185 SD-NNNLEELPNDV--------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEAS  252 (350)
T ss_dssp             TT-CTTCCCCCTTT--------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEE
T ss_pred             cc-CCcccCCCHHH--------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCc
Confidence            87 36777888754        23678999999999 46888886  568899999999999999999866678899998


Q ss_pred             ecC
Q 048826          689 IYR  691 (725)
Q Consensus       689 l~~  691 (725)
                      +.+
T Consensus       253 l~~  255 (350)
T 4ay9_X          253 LTY  255 (350)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            865

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=2.5e-15  Score=163.22  Aligned_cols=214  Identities=14%  Similarity=0.093  Sum_probs=142.5

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      ++|+.|++++|.+.+..+..++.+++|++|++++|......|  +..+++|++|++++|. +..++.    .++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC----CCCcCEEEC
Confidence            358888888887777777778888888888888865433333  7778888888888864 444442    268888888


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCcc-cCCCcccccceecccchhhHHHHhhccccc-cccCCCcEEEeecC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE-EDGLPTNLHSLWIEDNMEIWKSMIERGRGF-HRFSSLRRLTIINC  611 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~l~~L~~L~l~~~  611 (725)
                      ++|......+   ..+++|++|++++|......+ ..+.+++|++|++++|..... .+   ..+ ..+++|+.|++++|
T Consensus       107 ~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~---~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-NF---AELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             CSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-EG---GGGGGGTTTCCEEECTTS
T ss_pred             cCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-Ch---HHHhhhCCcccEEecCCC
Confidence            8887544333   245778888888874332222 233457888888888865321 11   223 36788888888874


Q ss_pred             CCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCC-CCcccccEEEec
Q 048826          612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEK-GLPSSLLQLHIY  690 (725)
Q Consensus       612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~  690 (725)
                        .+..++...          .+++|+.|++++| .+..+|..+..+++|+.|++++| .+..+|.. ..+++|+.|+++
T Consensus       180 --~l~~~~~~~----------~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          180 --FIYDVKGQV----------VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLR  245 (487)
T ss_dssp             --CCCEEECCC----------CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECT
T ss_pred             --ccccccccc----------cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcC
Confidence              333444332          4678888888884 56777766777888888888885 45566654 235778888888


Q ss_pred             CCchh
Q 048826          691 RCPLI  695 (725)
Q Consensus       691 ~c~~l  695 (725)
                      +++-.
T Consensus       246 ~N~l~  250 (487)
T 3oja_A          246 GNGFH  250 (487)
T ss_dssp             TCCBC
T ss_pred             CCCCc
Confidence            76543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.61  E-value=1.5e-14  Score=150.27  Aligned_cols=104  Identities=16%  Similarity=0.249  Sum_probs=82.5

Q ss_pred             ceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCc
Q 048826           33 KQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCL  110 (725)
Q Consensus        33 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  110 (725)
                      +.++.++++.+.+|..+    .+++++|+|++| .++.+|+  |+.+++|++|+|++|...+.++...+..     ++++
T Consensus        12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~-----L~~l   81 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL----PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN-----LPKL   81 (350)
T ss_dssp             TEEEEESTTCCSCCTTC----CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS-----CTTC
T ss_pred             CEEEecCCCCCccCcCc----CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc-----chhh
Confidence            46777888888888765    468999999998 8999986  8999999999999998777787655332     6777


Q ss_pred             ceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcc
Q 048826          111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQ  151 (725)
Q Consensus       111 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  151 (725)
                      +++...+.+++....    +..+..+++|++|+++++ .++
T Consensus        82 ~~~l~~~~N~l~~l~----~~~f~~l~~L~~L~l~~n-~l~  117 (350)
T 4ay9_X           82 HEIRIEKANNLLYIN----PEAFQNLPNLQYLLISNT-GIK  117 (350)
T ss_dssp             CEEEEEEETTCCEEC----TTSBCCCTTCCEEEEEEE-CCS
T ss_pred             hhhhcccCCcccccC----chhhhhcccccccccccc-ccc
Confidence            776666666777764    455688999999999988 554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.61  E-value=5.1e-15  Score=151.20  Aligned_cols=227  Identities=13%  Similarity=0.070  Sum_probs=155.9

Q ss_pred             CccEEEEecccchhhhhh---hhcCCCCccEEEecCCCCcccccccc--cCCCcccEEEeccCCCccccC----CCCcCc
Q 048826          455 SLKSLSVYGCSKLESIAE---RLDNNTSLEYINISNCENLKILPSGL--HNLRQLQEITIQRCGNLESFP----EGGLLC  525 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l  525 (725)
                      .++.+.+.++........   .+..+++|++|++++|......|..+  ..+++|++|++++|......+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            367777777765433211   12234679999999877666777766  788999999999877655433    223467


Q ss_pred             CcCceeeeccccCccccccccCCCCCcceeecCCCCCCCC--c---ccCCCcccccceecccchhhHHHHhhcccccccc
Q 048826          526 AKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPS--L---EEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRF  600 (725)
Q Consensus       526 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l  600 (725)
                      ++|++|++++|......+..+..+++|++|++++|.....  +   .....+++|++|++++|........ ....+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-CAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-HHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-HHHHHhcC
Confidence            8999999999987666667788899999999999854321  1   1124568999999999975321110 00124678


Q ss_pred             CCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCC
Q 048826          601 SSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGL  680 (725)
Q Consensus       601 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  680 (725)
                      ++|++|++++| ......|..+..      +..+++|++|++++| .++.+|..+  +++|+.|++++| .++.+|....
T Consensus       224 ~~L~~L~Ls~N-~l~~~~p~~~~~------~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~~~~  292 (310)
T 4glp_A          224 VQPHSLDLSHN-SLRATVNPSAPR------CMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSN-RLNRAPQPDE  292 (310)
T ss_dssp             CCCSSEECTTS-CCCCCCCSCCSS------CCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSC-CCCSCCCTTS
T ss_pred             CCCCEEECCCC-CCCccchhhHHh------ccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCC-cCCCCchhhh
Confidence            99999999984 222333555432      112479999999994 577888754  489999999985 5667666556


Q ss_pred             cccccEEEecCCc
Q 048826          681 PSSLLQLHIYRCP  693 (725)
Q Consensus       681 ~~~L~~L~l~~c~  693 (725)
                      +++|+.|++++++
T Consensus       293 l~~L~~L~L~~N~  305 (310)
T 4glp_A          293 LPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCCSCEECSSTT
T ss_pred             CCCccEEECcCCC
Confidence            7889999998875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.61  E-value=6.9e-16  Score=157.80  Aligned_cols=196  Identities=21%  Similarity=0.203  Sum_probs=136.2

Q ss_pred             CccEEEEecccchhhhhhhh--cCCCCccEEEecCCCCcccccccccCC-----CcccEEEeccCCCccccCCCCcCcCc
Q 048826          455 SLKSLSVYGCSKLESIAERL--DNNTSLEYINISNCENLKILPSGLHNL-----RQLQEITIQRCGNLESFPEGGLLCAK  527 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~  527 (725)
                      +|++|++++|.+.+.+|..+  ..+++|++|++++|. +..+|..+..+     ++|++|++++|......+..+..+++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            47888888877776666655  777888888888754 33346555555     78888888887655555567777888


Q ss_pred             CceeeeccccCccc--ccccc--CCCCCcceeecCCCCCCCCccc-----CCCcccccceecccchhhHHHHhhcccccc
Q 048826          528 LTRLTILDCKRLEA--LPKGL--HNLTSLQQLTIGKGGELPSLEE-----DGLPTNLHSLWIEDNMEIWKSMIERGRGFH  598 (725)
Q Consensus       528 L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  598 (725)
                      |++|++++|...+.  ++..+  ..+++|++|++++|. +..++.     ...+++|++|++++|..... .+.  ..+.
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~--~~~~  250 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDA-AGA--PSCD  250 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSS-CCC--SCCC
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcc-cch--hhhh
Confidence            88888888875443  23333  777888888888884 332211     12347888888888864321 111  2345


Q ss_pred             ccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCC
Q 048826          599 RFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCP  670 (725)
Q Consensus       599 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~  670 (725)
                      .+++|+.|++++|  .+..+|..+           +++|+.|++++| .++.+|. +..+++|+.|++++++
T Consensus       251 ~l~~L~~L~Ls~N--~l~~ip~~~-----------~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          251 WPSQLNSLNLSFT--GLKQVPKGL-----------PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCTTCCEEECTTS--CCSSCCSSC-----------CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred             hcCCCCEEECCCC--ccChhhhhc-----------cCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence            6789999999984  445777654           279999999994 6787776 7889999999999965

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.60  E-value=1.9e-14  Score=144.96  Aligned_cols=174  Identities=18%  Similarity=0.139  Sum_probs=123.4

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      ++++.|++++|.+.+..+..+..+++|+.|++++| .++.++.. ..+++|++|++++| .+..+|..+..+++|++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEEC
Confidence            45999999999888777888899999999999985 45556543 67899999999985 45678887888889999999


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC  611 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~  611 (725)
                      ++|......+..+..+++|++|++++|. +..++.  ...+++|+.|++++|+..  .++.  ..+..+++|+.|++++ 
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~--~l~~--~~~~~l~~L~~L~L~~-  181 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT--ELPA--GLLNGLENLDTLLLQE-  181 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS--CCCT--TTTTTCTTCCEEECCS-
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC--ccCH--HHhcCcCCCCEEECCC-
Confidence            9988554444678888999999999884 333332  233467777777777543  1211  3355667777777766 


Q ss_pred             CCCCccCCCCCcccccCcccCCCCCCcEEEeccCc
Q 048826          612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFP  646 (725)
Q Consensus       612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  646 (725)
                       +.+..+|..+.         ..++|+.|++++|+
T Consensus       182 -N~l~~ip~~~~---------~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          182 -NSLYTIPKGFF---------GSHLLPFAFLHGNP  206 (290)
T ss_dssp             -SCCCCCCTTTT---------TTCCCSEEECCSCC
T ss_pred             -CcCCccChhhc---------ccccCCeEEeCCCC
Confidence             44556665553         34567777777654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.58  E-value=4.8e-14  Score=140.80  Aligned_cols=106  Identities=17%  Similarity=0.177  Sum_probs=69.4

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccccc-ccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSG-LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      +++++|++++|.+.+..+..+..+++|++|++++|. ++.+|.. +..+++|++|++++|......+..+..+++|++|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            357888888877666555667777788888887743 4445443 46677777777777554333333456677777777


Q ss_pred             eccccCccccccccCCCCCcceeecCCC
Q 048826          533 ILDCKRLEALPKGLHNLTSLQQLTIGKG  560 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~  560 (725)
                      +++|......+..+..+++|++|++++|
T Consensus       116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A          116 LDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence            7777654444445667777777777776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.58  E-value=3.4e-16  Score=162.26  Aligned_cols=228  Identities=15%  Similarity=0.128  Sum_probs=161.2

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccc-ccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKI-LPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      ++++.|++++|...+..+. +..+++|++|++++|..... ++..+..+++|++|++++|......+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            3599999999877666554 56789999999999764433 677788899999999999876556666667789999999


Q ss_pred             eccccCcc--ccccccCCCCCcceeecCCCCCCCC--cc-cCCCcc-cccceecccch-hhH-HHHhhccccccccCCCc
Q 048826          533 ILDCKRLE--ALPKGLHNLTSLQQLTIGKGGELPS--LE-EDGLPT-NLHSLWIEDNM-EIW-KSMIERGRGFHRFSSLR  604 (725)
Q Consensus       533 l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~--~~-~~~~~~-~L~~L~l~~n~-~~~-~~~~~~~~~~~~l~~L~  604 (725)
                      +++|...+  .++..+..+++|++|++++|..+..  ++ ....++ +|++|++++|. .++ ..++   ..+..+++|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~---~~~~~~~~L~  225 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLV  225 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH---HHHHHCTTCS
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH---HHHhhCCCCC
Confidence            99995444  3566678899999999999955553  11 133457 99999999995 232 2222   3466789999


Q ss_pred             EEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccc-cccccCCcCCCeEeccCCCCCcccCCCCC---
Q 048826          605 RLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERL-SSSIVDLQNLTSLYLLDCPKLRYFPEKGL---  680 (725)
Q Consensus       605 ~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~---  680 (725)
                      .|++++|.......+..++         .+++|+.|++++|..+... ...+..+++|+.|++++|     +++.++   
T Consensus       226 ~L~l~~~~~l~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l  291 (336)
T 2ast_B          226 HLDLSDSVMLKNDCFQEFF---------QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLL  291 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGG---------GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHH
T ss_pred             EEeCCCCCcCCHHHHHHHh---------CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHH
Confidence            9999996422223333332         5689999999998633221 124567999999999998     444433   


Q ss_pred             cccccEEEecCCchhHHhhh
Q 048826          681 PSSLLQLHIYRCPLIEEKCR  700 (725)
Q Consensus       681 ~~~L~~L~l~~c~~l~~~~~  700 (725)
                      ...+..|+++ |.+++++..
T Consensus       292 ~~~l~~L~l~-~n~l~~~~~  310 (336)
T 2ast_B          292 KEALPHLQIN-CSHFTTIAR  310 (336)
T ss_dssp             HHHSTTSEES-CCCSCCTTC
T ss_pred             HhhCcceEEe-cccCccccC
Confidence            2457777775 455665443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.57  E-value=5.5e-16  Score=160.68  Aligned_cols=228  Identities=13%  Similarity=0.174  Sum_probs=158.7

Q ss_pred             CCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhh-hhhhhcCCCCccEEEecCCCCcccccc
Q 048826          418 SLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLES-IAERLDNNTSLEYINISNCENLKILPS  496 (725)
Q Consensus       418 ~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~l~~  496 (725)
                      +.++.+++.+. .+....+     .      ...+ ++|++|++++|.+.+. ++..+..+++|++|++++|......+.
T Consensus        70 ~~l~~L~l~~n-~l~~~~~-----~------~~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~  136 (336)
T 2ast_B           70 QGVIAFRCPRS-FMDQPLA-----E------HFSP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN  136 (336)
T ss_dssp             TTCSEEECTTC-EECSCCC-----S------CCCC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred             ccceEEEcCCc-cccccch-----h------hccC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence            67888888763 2332111     1      1111 5799999999987766 788889999999999999875556677


Q ss_pred             cccCCCcccEEEeccCCCcc--ccCCCCcCcCcCceeeeccccCccc--cccccCCCC-CcceeecCCCC-CCCC--cc-
Q 048826          497 GLHNLRQLQEITIQRCGNLE--SFPEGGLLCAKLTRLTILDCKRLEA--LPKGLHNLT-SLQQLTIGKGG-ELPS--LE-  567 (725)
Q Consensus       497 ~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~-~L~~L~l~~~~-~l~~--~~-  567 (725)
                      .+..+++|++|++++|..++  .++..+..+++|++|++++|..++.  ++..+..++ +|++|++++|. .+..  ++ 
T Consensus       137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~  216 (336)
T 2ast_B          137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST  216 (336)
T ss_dssp             HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence            78889999999999986555  3566677889999999999933432  566678899 99999999995 3331  22 


Q ss_pred             cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcc
Q 048826          568 EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPN  647 (725)
Q Consensus       568 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  647 (725)
                      ....+++|++|++++|..++....   ..+..+++|++|++++|...   .+..+      ..+..+++|+.|++++|  
T Consensus       217 ~~~~~~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~~~~~~---~~~~~------~~l~~~~~L~~L~l~~~--  282 (336)
T 2ast_B          217 LVRRCPNLVHLDLSDSVMLKNDCF---QEFFQLNYLQHLSLSRCYDI---IPETL------LELGEIPTLKTLQVFGI--  282 (336)
T ss_dssp             HHHHCTTCSEEECTTCTTCCGGGG---GGGGGCTTCCEEECTTCTTC---CGGGG------GGGGGCTTCCEEECTTS--
T ss_pred             HHhhCCCCCEEeCCCCCcCCHHHH---HHHhCCCCCCEeeCCCCCCC---CHHHH------HHHhcCCCCCEEeccCc--
Confidence            223468999999999985432222   35778899999999996411   11111      01235799999999997  


Q ss_pred             cccccc-cccCC-cCCCeEeccCCCCCcccC
Q 048826          648 LERLSS-SIVDL-QNLTSLYLLDCPKLRYFP  676 (725)
Q Consensus       648 l~~i~~-~~~~~-~~L~~L~l~~c~~l~~l~  676 (725)
                         ++. .+..+ .+|+.|++++ +.++...
T Consensus       283 ---i~~~~~~~l~~~l~~L~l~~-n~l~~~~  309 (336)
T 2ast_B          283 ---VPDGTLQLLKEALPHLQINC-SHFTTIA  309 (336)
T ss_dssp             ---SCTTCHHHHHHHSTTSEESC-CCSCCTT
T ss_pred             ---cCHHHHHHHHhhCcceEEec-ccCcccc
Confidence               332 22333 3477777866 4555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.57  E-value=7.3e-15  Score=150.07  Aligned_cols=196  Identities=19%  Similarity=0.149  Sum_probs=127.3

Q ss_pred             CccEEEEecccchhhhhhhh--cCCCCccEEEecCCCCccccc----ccccCCCcccEEEeccCCCccccCCCCcCcCcC
Q 048826          455 SLKSLSVYGCSKLESIAERL--DNNTSLEYINISNCENLKILP----SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKL  528 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~l~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  528 (725)
                      +|++|++++|.+.+..+..+  ..+++|++|++++|......+    ..+..+++|++|++++|......+..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            47777777777666666665  667777777777755443322    223457777777777766655555666677777


Q ss_pred             ceeeeccccCccc--cc--cccCCCCCcceeecCCCCCCCCccc-----CCCcccccceecccchhhHHHHhhccccccc
Q 048826          529 TRLTILDCKRLEA--LP--KGLHNLTSLQQLTIGKGGELPSLEE-----DGLPTNLHSLWIEDNMEIWKSMIERGRGFHR  599 (725)
Q Consensus       529 ~~L~l~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  599 (725)
                      ++|++++|+..+.  ++  ..+..+++|++|++++|. +..++.     ...+++|++|++++|.... ..   +..+..
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~---p~~~~~  246 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRA-TV---NPSAPR  246 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCC-CC---CSCCSS
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCc-cc---hhhHHh
Confidence            7777777764331  21  223567778888887773 333322     1234778888888776432 11   122333


Q ss_pred             c---CCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCC
Q 048826          600 F---SSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCP  670 (725)
Q Consensus       600 l---~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~  670 (725)
                      +   ++|++|++++  +.+..+|..+           +++|+.|++++| .++.+|. +..+++|+.|++++|+
T Consensus       247 ~~~~~~L~~L~Ls~--N~l~~lp~~~-----------~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          247 CMWSSALNSLNLSF--AGLEQVPKGL-----------PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCCTTCCCEECCS--SCCCSCCSCC-----------CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred             ccCcCcCCEEECCC--CCCCchhhhh-----------cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence            3   6899999988  4455677654           379999999994 5777665 5788999999999975

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.56  E-value=5.8e-14  Score=141.47  Aligned_cols=196  Identities=16%  Similarity=0.151  Sum_probs=142.2

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      +++++++++++... .+|..+  .++++.|++++|......+..+..+++|++|++++|. +..++.. ..+++|++|++
T Consensus        10 ~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G           10 ASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             TTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEEC
T ss_pred             CCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEEC
Confidence            36899999887654 445443  3689999999966554446678889999999999865 4555543 67889999999


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC  611 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~  611 (725)
                      ++|. ++.+|..+..+++|++|++++|. +..++.  ...+++|++|++++|....  ++.  ..+..+++|+.|++++ 
T Consensus        85 s~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~--~~~--~~~~~l~~L~~L~L~~-  157 (290)
T 1p9a_G           85 SHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT--LPP--GLLTPTPKLEKLSLAN-  157 (290)
T ss_dssp             CSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC--CCT--TTTTTCTTCCEEECTT-
T ss_pred             CCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCc--cCh--hhcccccCCCEEECCC-
Confidence            9987 45788888889999999999984 343332  3445888888888886532  221  4466788888888887 


Q ss_pred             CCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCC
Q 048826          612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPK  671 (725)
Q Consensus       612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~  671 (725)
                       +.+..+|....        ..+++|+.|++++ +.++.+|..+...++|+.|++++||-
T Consensus       158 -N~l~~l~~~~~--------~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          158 -NNLTELPAGLL--------NGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             -SCCSCCCTTTT--------TTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             -CcCCccCHHHh--------cCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCc
Confidence             45556666542        2578888888888 45778887777778888888888653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.55  E-value=1.3e-13  Score=137.60  Aligned_cols=195  Identities=20%  Similarity=0.234  Sum_probs=125.1

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCccccCC-CCcCcCcCceee
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLT  532 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~  532 (725)
                      +.+.++++++... .+|..+.  ++++.|++++|. +..++ ..+..+++|++|++++|.. ..++. .+..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEE
Confidence            4778888887654 3454333  578888988854 44444 4677888889999888654 45554 346788888888


Q ss_pred             eccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      +++|......+..+..+++|++|++++|. +..++.  ...+++|++|++++|....  ++.  ..+..+++|++|++++
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~--~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQS--LPK--GVFDKLTSLKELRLYN  166 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC--CCT--TTTTTCTTCCEEECCS
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCc--cCH--hHccCCcccceeEecC
Confidence            88887544334456788888888888874 333322  2345777778877775431  111  3356677777777776


Q ss_pred             CCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCC
Q 048826          611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCP  670 (725)
Q Consensus       611 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~  670 (725)
                      |  .+..++...        +..+++|+.|++++| .++.++. .+..+++|+.|++++||
T Consensus       167 n--~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          167 N--QLKRVPEGA--------FDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             S--CCSCCCTTT--------TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             C--cCcEeChhH--------hccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            3  344444432        124677777777774 4555554 34567777777777765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.55  E-value=1.1e-14  Score=145.57  Aligned_cols=133  Identities=14%  Similarity=0.188  Sum_probs=87.5

Q ss_pred             cCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCC
Q 048826           25 MLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSS  104 (725)
Q Consensus        25 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~  104 (725)
                      .+..+++|++|+++++....++. +..  +++|++|++++| .+..++.++.+++|++|++++|. ++.++...++    
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~~~~-l~~--l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~----  106 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKSVQG-IQY--LPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQ-LQSLPNGVFD----  106 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCCCTT-GGG--CTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSC-CCCCCTTTTT----
T ss_pred             ccccccceeeeeeCCCCcccccc-ccc--CCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCc-cCccChhHhc----
Confidence            34455778888888877766553 332  788888888887 57777668888888888888876 6666654332    


Q ss_pred             CCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccE
Q 048826          105 TPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCK  184 (725)
Q Consensus       105 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~  184 (725)
                       .+++|++|+++++ +++...    +..+..+++|++|++++| .++ .+|.                 ..+..+++|+.
T Consensus       107 -~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n-~l~-~~~~-----------------~~~~~l~~L~~  161 (272)
T 3rfs_A          107 -KLTNLKELVLVEN-QLQSLP----DGVFDKLTNLTYLNLAHN-QLQ-SLPK-----------------GVFDKLTNLTE  161 (272)
T ss_dssp             -TCTTCCEEECTTS-CCCCCC----TTTTTTCTTCCEEECCSS-CCC-CCCT-----------------TTTTTCTTCCE
T ss_pred             -CCcCCCEEECCCC-cCCccC----HHHhccCCCCCEEECCCC-ccC-ccCH-----------------HHhccCccCCE
Confidence             3677888888775 455442    333567778888888777 554 3332                 22455566666


Q ss_pred             EEecCCC
Q 048826          185 LKIYGCK  191 (725)
Q Consensus       185 L~l~~~~  191 (725)
                      |++++|.
T Consensus       162 L~l~~n~  168 (272)
T 3rfs_A          162 LDLSYNQ  168 (272)
T ss_dssp             EECCSSC
T ss_pred             EECCCCC
Confidence            6666664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.55  E-value=2.7e-14  Score=143.28  Aligned_cols=199  Identities=16%  Similarity=0.108  Sum_probs=147.5

Q ss_pred             CCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeec
Q 048826          478 TSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTI  557 (725)
Q Consensus       478 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  557 (725)
                      ++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57999999996544333447889999999999997655444557888999999999999866655677899999999999


Q ss_pred             CCCCCCCCcc-cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCC
Q 048826          558 GKGGELPSLE-EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPAS  636 (725)
Q Consensus       558 ~~~~~l~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  636 (725)
                      ++|......+ ....+++|++|++++|......   .+..+..+++|++|++++|  .+..++...        +..+++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N--~l~~~~~~~--------~~~l~~  174 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSN--KIQSIYCTD--------LRVLHQ  174 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSS--CCCEECGGG--------GHHHHT
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCC--CCCcCCHHH--------hhhhhh
Confidence            9995332222 2455699999999999753211   1246888999999999994  344443321        113344


Q ss_pred             Cc----EEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCC--cccccEEEecC
Q 048826          637 LT----SLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGL--PSSLLQLHIYR  691 (725)
Q Consensus       637 L~----~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~  691 (725)
                      |+    .|++++ +.+..++.......+|+.|++++| .++.++...+  +++|+.|++++
T Consensus       175 L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          175 MPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             CTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred             ccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccC
Confidence            54    899999 457778766566679999999996 4778776543  68999999994

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.53  E-value=4.1e-14  Score=144.08  Aligned_cols=193  Identities=17%  Similarity=0.215  Sum_probs=147.5

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      ++|++|++++|.+.. ++ .+..+++|++|++++| .+..++. +..+++|++|++++|. +..++ .+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence            469999999987655 33 5788999999999996 5556665 8889999999999976 55555 5778899999999


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDD  613 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  613 (725)
                      ++|.. ..++. +..+++|++|++++|. +..++....+++|++|++++|....  +    ..+..+++|+.|++++|  
T Consensus       115 ~~n~l-~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~--~----~~l~~l~~L~~L~l~~n--  183 (308)
T 1h6u_A          115 TSTQI-TDVTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSD--L----TPLANLSKLTTLKADDN--  183 (308)
T ss_dssp             TTSCC-CCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCC--C----GGGTTCTTCCEEECCSS--
T ss_pred             CCCCC-CCchh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCC--C----hhhcCCCCCCEEECCCC--
Confidence            99984 44553 8899999999999984 4445555667899999999996532  1    12778899999999984  


Q ss_pred             CCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccC
Q 048826          614 DMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFP  676 (725)
Q Consensus       614 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~  676 (725)
                      .+..++. +         ..+++|+.|++++| .+..++. +..+++|+.|++++|+ +...+
T Consensus       184 ~l~~~~~-l---------~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N~-i~~~~  233 (308)
T 1h6u_A          184 KISDISP-L---------ASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQT-ITNQP  233 (308)
T ss_dssp             CCCCCGG-G---------GGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEEE-EECCC
T ss_pred             ccCcChh-h---------cCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCCe-eecCC
Confidence            3344443 2         36789999999995 5666664 7889999999999864 44443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.53  E-value=4e-14  Score=144.15  Aligned_cols=195  Identities=16%  Similarity=0.171  Sum_probs=144.0

Q ss_pred             cCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc
Q 048826          417 SSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS  496 (725)
Q Consensus       417 ~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~  496 (725)
                      .++|++|++.++ .++. ++  .+..         + ++|+.|++++|.+.+..+  +..+++|++|++++|. +..++ 
T Consensus        40 l~~L~~L~l~~~-~i~~-l~--~~~~---------l-~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~-  101 (308)
T 1h6u_A           40 LDGITTLSAFGT-GVTT-IE--GVQY---------L-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVS-  101 (308)
T ss_dssp             HHTCCEEECTTS-CCCC-CT--TGGG---------C-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCG-
T ss_pred             cCCcCEEEeeCC-CccC-ch--hhhc---------c-CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCch-
Confidence            467999998875 3443 21  1111         1 469999999997766544  8899999999999965 55564 


Q ss_pred             cccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCccccc
Q 048826          497 GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLH  576 (725)
Q Consensus       497 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~  576 (725)
                      .+..+++|++|++++|. +..++. +..+++|++|++++|.. ..++. +..+++|++|++++| .+..++....+++|+
T Consensus       102 ~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~  176 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLT  176 (308)
T ss_dssp             GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCC
T ss_pred             hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCC-cCCCChhhcCCCCCC
Confidence            57889999999999975 445553 77889999999999974 44444 788999999999998 445555566679999


Q ss_pred             ceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc
Q 048826          577 SLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS  653 (725)
Q Consensus       577 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~  653 (725)
                      +|++++|....  +    ..+..+++|++|++++|  .+..++. +         ..+++|+.|++++| .+...|.
T Consensus       177 ~L~l~~n~l~~--~----~~l~~l~~L~~L~L~~N--~l~~~~~-l---------~~l~~L~~L~l~~N-~i~~~~~  234 (308)
T 1h6u_A          177 TLKADDNKISD--I----SPLASLPNLIEVHLKNN--QISDVSP-L---------ANTSNLFIVTLTNQ-TITNQPV  234 (308)
T ss_dssp             EEECCSSCCCC--C----GGGGGCTTCCEEECTTS--CCCBCGG-G---------TTCTTCCEEEEEEE-EEECCCE
T ss_pred             EEECCCCccCc--C----hhhcCCCCCCEEEccCC--ccCcccc-c---------cCCCCCCEEEccCC-eeecCCe
Confidence            99999996532  1    12778899999999984  3334442 2         36899999999995 4676664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.50  E-value=6.3e-14  Score=140.08  Aligned_cols=124  Identities=19%  Similarity=0.103  Sum_probs=85.2

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      +|++|++++|.+.+..+..+..+++|++|++++|. ++.++ ..+..+++|++|++++|......+..+..+++|++|++
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence            36677777766665555556777788888888764 44443 34567888888888886544433444567788888888


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchh
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNME  585 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~  585 (725)
                      ++|......+..+..+++|++|++++|+.      .+.++.|+.|++..|..
T Consensus       189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKH  234 (272)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCB------CCCTTTTHHHHHHHHHT
T ss_pred             CCCcCCccCHHHHhCCcCCCEEEccCCCc------cccCcHHHHHHHHHHhC
Confidence            88876555555578888888888888842      23457788888877754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.48  E-value=1.1e-14  Score=153.84  Aligned_cols=107  Identities=14%  Similarity=0.126  Sum_probs=58.5

Q ss_pred             CccEEEEecccchhh-----hhhhhcCCCCccEEEecCCCCc----ccccccccCCCcccEEEeccCCCccc----cCCC
Q 048826          455 SLKSLSVYGCSKLES-----IAERLDNNTSLEYINISNCENL----KILPSGLHNLRQLQEITIQRCGNLES----FPEG  521 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~----~~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~  521 (725)
                      +|++|++++|.+...     .+..+..+++|+.|++++|...    ..+|..+..+++|++|++++|.....    ++..
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  267 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  267 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence            466666666655422     2225556666666666665432    34455556666666666666553322    2222


Q ss_pred             C--cCcCcCceeeeccccCcc----cccccc-CCCCCcceeecCCCC
Q 048826          522 G--LLCAKLTRLTILDCKRLE----ALPKGL-HNLTSLQQLTIGKGG  561 (725)
Q Consensus       522 ~--~~l~~L~~L~l~~~~~~~----~~~~~~-~~l~~L~~L~l~~~~  561 (725)
                      +  ..+++|++|++++|....    .+|..+ .++++|++|++++|.
T Consensus       268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            2  225566666666666443    255544 445666666666663

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.45  E-value=7.7e-15  Score=155.03  Aligned_cols=208  Identities=14%  Similarity=0.072  Sum_probs=114.5

Q ss_pred             CCccEEEEecccc---hhhhh-------hhhcCCCCccEEEecCCCCcc----cccccccCCCcccEEEeccCCCccc--
Q 048826          454 PSLKSLSVYGCSK---LESIA-------ERLDNNTSLEYINISNCENLK----ILPSGLHNLRQLQEITIQRCGNLES--  517 (725)
Q Consensus       454 ~~L~~L~L~~~~~---~~~~~-------~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~~~~~--  517 (725)
                      ++|++|++++|..   .+.+|       ..+..+++|++|++++|....    .+|..+..+++|++|++++|.....  
T Consensus        60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  139 (386)
T 2ca6_A           60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  139 (386)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence            3577777777532   22222       233567777777777755433    2455666677777777777654321  


Q ss_pred             --cCCCCcCc---------CcCceeeeccccCc-cccc---cccCCCCCcceeecCCCCCCC------Ccc-cCCCcccc
Q 048826          518 --FPEGGLLC---------AKLTRLTILDCKRL-EALP---KGLHNLTSLQQLTIGKGGELP------SLE-EDGLPTNL  575 (725)
Q Consensus       518 --~~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L~l~~~~~l~------~~~-~~~~~~~L  575 (725)
                        ++..+..+         ++|++|++++|... ..++   ..+..+++|++|++++|. +.      ..+ ....+++|
T Consensus       140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L  218 (386)
T 2ca6_A          140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQEL  218 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTC
T ss_pred             HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCc
Confidence              22122222         67777777777643 2333   345566777777777773 22      112 23345677


Q ss_pred             cceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCc---cCCCCCcccccCcccCCCCCCcEEEeccCccccc--
Q 048826          576 HSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMV---SFPPEPEDVRLGTTLPLPASLTSLWISNFPNLER--  650 (725)
Q Consensus       576 ~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--  650 (725)
                      ++|++++|..........+..+..+++|++|++++|.....   .++..+.       ...+++|+.|++++|. +..  
T Consensus       219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-------~~~~~~L~~L~L~~n~-i~~~g  290 (386)
T 2ca6_A          219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS-------KLENIGLQTLRLQYNE-IELDA  290 (386)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH-------TCSSCCCCEEECCSSC-CBHHH
T ss_pred             cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh-------hccCCCeEEEECcCCc-CCHHH
Confidence            77777777653222222223456677777777777422110   1122110       0125677777777754 443  


Q ss_pred             ---ccccc-cCCcCCCeEeccCCC
Q 048826          651 ---LSSSI-VDLQNLTSLYLLDCP  670 (725)
Q Consensus       651 ---i~~~~-~~~~~L~~L~l~~c~  670 (725)
                         ++..+ ..+++|+.|++++|+
T Consensus       291 ~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          291 VRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHHHhcCCCceEEEccCCc
Confidence               66555 446777777777754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.43  E-value=1.9e-12  Score=127.64  Aligned_cols=174  Identities=17%  Similarity=0.184  Sum_probs=82.1

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD  535 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  535 (725)
                      .++++++++... .+|..+.  ++++.|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            455555554332 2332222  3555555555433333333455555555555555443333333344555555555555


Q ss_pred             ccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCC
Q 048826          536 CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDM  615 (725)
Q Consensus       536 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  615 (725)
                      |......+..+..+++|++|++++|. +..++.                          ..+..+++|++|++++  +.+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~--------------------------~~~~~l~~L~~L~Ls~--N~l  143 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPS--------------------------GVFDRLTKLKELRLNT--NQL  143 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT--------------------------TTTTTCTTCCEEECCS--SCC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCc-CCCcCh--------------------------hHhccCCcccEEECcC--CcC
Confidence            55333333344555555555555552 222221                          2234455555555555  233


Q ss_pred             ccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCC
Q 048826          616 VSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCP  670 (725)
Q Consensus       616 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~  670 (725)
                      ..++...        +..+++|+.|++++| .++.++. .+..+++|+.|++++|+
T Consensus       144 ~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          144 QSIPAGA--------FDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCCCTTT--------TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CccCHHH--------cCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence            3344321        124556666666663 3444433 44556666666666644

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.42  E-value=8.6e-13  Score=130.09  Aligned_cols=130  Identities=15%  Similarity=0.092  Sum_probs=97.4

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      ++++.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            46999999999988888888999999999999996555544556788999999999997655444556778899999999


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccch
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNM  584 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~  584 (725)
                      ++|......+..+..+++|++|++++|. +..++.  ...+++|++|++++|.
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc
Confidence            9997554344456889999999999983 443332  2233555555555553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.41  E-value=9.2e-13  Score=124.54  Aligned_cols=146  Identities=15%  Similarity=0.165  Sum_probs=97.9

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      +|+.|++++|.+. .++ .+..+++|++|++++| .+..+ ..+..+++|++|++++|......+..+..+++|++|+++
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            4888888887665 344 5777888888888886 44444 356778888888888876655566777778888888888


Q ss_pred             cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      +|......+..+..+++|++|++++|..+..++....+++|++|++++|....  +    ..+..+++|+.|++++
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~--~----~~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD--Y----RGIEDFPKLNQLYAFS  190 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC--C----TTGGGCSSCCEEEECB
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC--h----HHhccCCCCCEEEeeC
Confidence            88766556667778888888888888545555544445666666666664321  0    1244455555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.39  E-value=5.4e-14  Score=146.95  Aligned_cols=244  Identities=12%  Similarity=0.020  Sum_probs=130.2

Q ss_pred             hhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCC-----CCCcEEEeecC
Q 048826          249 NELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSL-----SSLREIEIYKC  323 (725)
Q Consensus       249 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~L~~~  323 (725)
                      +.++...++|++|++++| .++..+.......+..+   +.+|++|+|++|.+....+..+..+     ++|++|++++|
T Consensus        15 ~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n   90 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANT---PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN   90 (362)
T ss_dssp             HHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTC---CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred             HHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhC---CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence            445555666999999986 47766654333334444   2289999999988765545544443     88888888887


Q ss_pred             CCccccCC------CCCC-CCCceEEeeccCccccccccccc---CC-CCcccEEEeeccCCcccccccccccccceEEe
Q 048826          324 SSLVSFPE------VALP-SKLKKIQFRECDALKLLPEAWMS---DT-NSSLEILSIWVCHSLTYLAGVQLPRSLKRLVI  392 (725)
Q Consensus       324 ~~~~~~~~------~~~l-~~L~~L~l~~~~~~~~~~~~~~~---~~-~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l  392 (725)
                      . ++..+.      +..+ ++|++|++++|. ++..+.....   .. ..+|++|++++|.                   
T Consensus        91 ~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-------------------  149 (362)
T 3goz_A           91 F-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-------------------  149 (362)
T ss_dssp             C-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-------------------
T ss_pred             c-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-------------------
Confidence            6 333221      1112 567777777766 2222211100   00 1234444444331                   


Q ss_pred             ecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhh
Q 048826          393 LNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAE  472 (725)
Q Consensus       393 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  472 (725)
                                                            +.+ .....++..     +...+++|++|++++|.+.+..+.
T Consensus       150 --------------------------------------l~~-~~~~~l~~~-----l~~~~~~L~~L~Ls~n~l~~~~~~  185 (362)
T 3goz_A          150 --------------------------------------LGI-KSSDELIQI-----LAAIPANVNSLNLRGNNLASKNCA  185 (362)
T ss_dssp             --------------------------------------GGG-SCHHHHHHH-----HHTSCTTCCEEECTTSCGGGSCHH
T ss_pred             --------------------------------------CCH-HHHHHHHHH-----HhcCCccccEeeecCCCCchhhHH
Confidence                                                  100 000000000     011112477777777766554433


Q ss_pred             ----hhcCC-CCccEEEecCCCCcc----cccccccC-CCcccEEEeccCCCccc----cCCCCcCcCcCceeeeccccC
Q 048826          473 ----RLDNN-TSLEYINISNCENLK----ILPSGLHN-LRQLQEITIQRCGNLES----FPEGGLLCAKLTRLTILDCKR  538 (725)
Q Consensus       473 ----~~~~l-~~L~~L~l~~~~~~~----~l~~~~~~-l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~  538 (725)
                          .+..+ ++|+.|++++|....    .++..+.. .++|++|++++|.....    +...+..+++|++|++++|..
T Consensus       186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l  265 (362)
T 3goz_A          186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV  265 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred             HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence                33344 477777777754322    13444444 34777777777643322    122345566788888877761


Q ss_pred             -------ccccccccCCCCCcceeecCCCC
Q 048826          539 -------LEALPKGLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       539 -------~~~~~~~~~~l~~L~~L~l~~~~  561 (725)
                             ...++..+..+++|+.|++++|.
T Consensus       266 ~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          266 KNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             cccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence                   12334456677777888887774

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.36  E-value=7.6e-14  Score=145.84  Aligned_cols=230  Identities=14%  Similarity=0.044  Sum_probs=147.3

Q ss_pred             CCCCccEEEEecccchhhhh----hhhcCCC-CccEEEecCCCCcccccccccCC-----CcccEEEeccCCCccccCCC
Q 048826          452 LPPSLKSLSVYGCSKLESIA----ERLDNNT-SLEYINISNCENLKILPSGLHNL-----RQLQEITIQRCGNLESFPEG  521 (725)
Q Consensus       452 ~~~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~  521 (725)
                      .+++|++|++++|.+.+..+    ..+..++ +|++|++++|......+..+..+     ++|++|++++|......+..
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence            34569999999998777655    6777888 89999999975444434444443     89999999998754433322


Q ss_pred             ----CcCc-CcCceeeeccccCccccccc----cCC-CCCcceeecCCCCCCCC----ccc--CCCcccccceecccchh
Q 048826          522 ----GLLC-AKLTRLTILDCKRLEALPKG----LHN-LTSLQQLTIGKGGELPS----LEE--DGLPTNLHSLWIEDNME  585 (725)
Q Consensus       522 ----~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~l~~----~~~--~~~~~~L~~L~l~~n~~  585 (725)
                          +..+ ++|++|++++|......+..    +.. .++|++|++++|..-..    ++.  ....++|++|++++|..
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l  179 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL  179 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence                2333 79999999999854433322    334 36999999999843211    111  11224999999999976


Q ss_pred             hHHHHhhcccccccc-CCCcEEEeecCCCCCcc-----CCCCCcccccCcccCCCCCCcEEEeccCccccccc-----cc
Q 048826          586 IWKSMIERGRGFHRF-SSLRRLTIINCDDDMVS-----FPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS-----SS  654 (725)
Q Consensus       586 ~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-----~~  654 (725)
                      ...........+..+ ++|++|++++|.  +..     ++..+.        ...++|++|++++| .+...+     ..
T Consensus       180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--i~~~~~~~l~~~l~--------~~~~~L~~L~Ls~N-~l~~~~~~~l~~~  248 (362)
T 3goz_A          180 ASKNCAELAKFLASIPASVTSLDLSANL--LGLKSYAELAYIFS--------SIPNHVVSLNLCLN-CLHGPSLENLKLL  248 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHH--------HSCTTCCEEECCSS-CCCCCCHHHHHHT
T ss_pred             chhhHHHHHHHHHhCCCCCCEEECCCCC--CChhHHHHHHHHHh--------cCCCCceEEECcCC-CCCcHHHHHHHHH
Confidence            432222211234455 599999999853  222     232221        12468999999996 455433     23


Q ss_pred             ccCCcCCCeEeccCCCCCcccC--------CC-CCcccccEEEecCCc
Q 048826          655 IVDLQNLTSLYLLDCPKLRYFP--------EK-GLPSSLLQLHIYRCP  693 (725)
Q Consensus       655 ~~~~~~L~~L~l~~c~~l~~l~--------~~-~~~~~L~~L~l~~c~  693 (725)
                      +..+++|+.|++++|. +..+.        .. ...++|+.|++++++
T Consensus       249 ~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          249 KDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            4667899999999874 12221        11 124678889888875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.36  E-value=3.3e-12  Score=121.98  Aligned_cols=179  Identities=18%  Similarity=0.237  Sum_probs=112.5

Q ss_pred             ceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCc
Q 048826           33 KQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCL  110 (725)
Q Consensus        33 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  110 (725)
                      +.++.++++...+|..+    .++|++|++++| .++.++.  ++.+++|++|++++|. ++.++...++     .+++|
T Consensus        10 ~~v~c~~~~l~~~p~~~----~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-----~l~~L   78 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI----PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFN-----KLTSL   78 (208)
T ss_dssp             TEEECCSSCCSSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTT-----TCTTC
T ss_pred             CEEEecCCCccCCCCCC----CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCc-cCccChhhcC-----CCCCc
Confidence            35566666666766544    457888888887 6777765  6788888888888876 6666654322     26777


Q ss_pred             ceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCC
Q 048826          111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGC  190 (725)
Q Consensus       111 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~  190 (725)
                      ++|+++++ +++...    ...+..+++|++|+++++ .++ .++.                 ..+..+++|+.|++++|
T Consensus        79 ~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~L~~N-~l~-~~~~-----------------~~~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A           79 TYLNLSTN-QLQSLP----NGVFDKLTQLKELALNTN-QLQ-SLPD-----------------GVFDKLTQLKDLRLYQN  134 (208)
T ss_dssp             CEEECCSS-CCCCCC----TTTTTTCTTCCEEECCSS-CCC-CCCT-----------------TTTTTCTTCCEEECCSS
T ss_pred             CEEECCCC-cCCccC----HhHhcCccCCCEEEcCCC-cCc-ccCH-----------------hHhccCCcCCEEECCCC
Confidence            77777764 444432    233466777777777766 443 2222                 23456666777777766


Q ss_pred             CceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcc
Q 048826          191 KKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQ  270 (725)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  270 (725)
                      ....                                                    .+...+..+++|++|++++++...
T Consensus       135 ~l~~----------------------------------------------------~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          135 QLKS----------------------------------------------------VPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCSC----------------------------------------------------CCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             ccce----------------------------------------------------eCHHHhccCCCccEEEecCCCeec
Confidence            4221                                                    112233566778888888764322


Q ss_pred             cchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCC
Q 048826          271 SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSS  314 (725)
Q Consensus       271 ~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~  314 (725)
                      .            .    ++|++|+++.|.+.+.+|..++.++.
T Consensus       163 ~------------~----~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 T------------C----PGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             C------------T----TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             C------------C----CCHHHHHHHHHhCCceeeccCccccC
Confidence            1            1    67788888888887788877765544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.35  E-value=2.1e-12  Score=130.18  Aligned_cols=120  Identities=18%  Similarity=0.212  Sum_probs=57.8

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      +|+.|++++|.+... + .+..+++|+.|++++| .+..++. +..+++|++|++++|. +..++. +..+++|++|+++
T Consensus        47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECT
T ss_pred             cccEEEccCCCcccC-h-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECC
Confidence            366666666544332 2 3555566666666653 2333333 5555666666666543 233332 4455555555555


Q ss_pred             cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccc
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDN  583 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n  583 (725)
                      +|... .+ ..+..+++|++|++++|. +..++....+++|++|++++|
T Consensus       121 ~n~i~-~~-~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          121 HNGIS-DI-NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             TSCCC-CC-GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS
T ss_pred             CCcCC-CC-hhhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCC
Confidence            55422 22 234455555555555552 222232333344444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.34  E-value=5.1e-12  Score=138.22  Aligned_cols=185  Identities=18%  Similarity=0.238  Sum_probs=97.6

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      +++.|++++|.+.+ +|..+  +++|+.|++++| .++.+|   ..+++|++|++++|. +..+|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence            35666666655443 33333  255666666663 333555   335666666666643 333554 322  66666666


Q ss_pred             cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCC
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDD  614 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  614 (725)
                      +|.. +.+|.   .+++|+.|++++|. +..++.  .+++|++|++++|....  +   +. +.  ++|+.|++++  +.
T Consensus       129 ~N~l-~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~L~~--l---p~-l~--~~L~~L~Ls~--N~  191 (571)
T 3cvr_A          129 NNQL-TMLPE---LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNNQLTF--L---PE-LP--ESLEALDVST--NL  191 (571)
T ss_dssp             SSCC-SCCCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSC--C---CC-CC--TTCCEEECCS--SC
T ss_pred             CCcC-CCCCC---cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCCCCCC--c---ch-hh--CCCCEEECcC--CC
Confidence            6653 23544   45666666666663 333333  34666666666664321  1   11 22  5667777766  33


Q ss_pred             CccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCc
Q 048826          615 MVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLR  673 (725)
Q Consensus       615 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~  673 (725)
                      +..+|. +..    ......+.|+.|++++ +.++.+|..+..+++|+.|++++|+...
T Consensus       192 L~~lp~-~~~----~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          192 LESLPA-VPV----RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CSSCCC-CC------------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             CCchhh-HHH----hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence            445554 310    0001112237777777 4566777766667777777777765433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.31  E-value=6e-12  Score=118.90  Aligned_cols=128  Identities=15%  Similarity=0.127  Sum_probs=89.3

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      ++|++|++++|.... + ..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus        66 ~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           66 HNIKDLTINNIHATN-Y-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             TTCSEEEEESCCCSC-C-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCCEEEccCCCCCc-c-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            358888888774332 2 35677788888888876555556667777888888888887665555666667778888888


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchh
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNME  585 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~  585 (725)
                      ++|...+.++ .+..+++|++|++++|. +..++....+++|++|++++|+.
T Consensus       144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          144 SYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC--
T ss_pred             cCCCCccccH-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCccc
Confidence            8887555665 57778888888888873 44444455568888888888864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.29  E-value=9.6e-12  Score=125.29  Aligned_cols=169  Identities=18%  Similarity=0.261  Sum_probs=132.7

Q ss_pred             cCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcce
Q 048826          475 DNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQ  554 (725)
Q Consensus       475 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  554 (725)
                      ..+++|+.|++++| .+..++ .+..+++|++|++++|.. ..++. +..+++|++|++++|.. ..++ .+..+++|++
T Consensus        43 ~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCE
T ss_pred             hhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCE
Confidence            45778999999995 555664 478899999999999754 44554 77889999999999984 4454 4889999999


Q ss_pred             eecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCC
Q 048826          555 LTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLP  634 (725)
Q Consensus       555 L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~  634 (725)
                      |++++| .+..++....+++|++|++++|....  +    ..+..+++|+.|++++|  .+..++. +         ..+
T Consensus       117 L~L~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~--~----~~l~~l~~L~~L~L~~N--~l~~~~~-l---------~~l  177 (291)
T 1h6t_A          117 LSLEHN-GISDINGLVHLPQLESLYLGNNKITD--I----TVLSRLTKLDTLSLEDN--QISDIVP-L---------AGL  177 (291)
T ss_dssp             EECTTS-CCCCCGGGGGCTTCCEEECCSSCCCC--C----GGGGGCTTCSEEECCSS--CCCCCGG-G---------TTC
T ss_pred             EECCCC-cCCCChhhcCCCCCCEEEccCCcCCc--c----hhhccCCCCCEEEccCC--ccccchh-h---------cCC
Confidence            999999 45555666677999999999996542  1    34778999999999984  3344433 2         368


Q ss_pred             CCCcEEEeccCcccccccccccCCcCCCeEeccCCC
Q 048826          635 ASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCP  670 (725)
Q Consensus       635 ~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~  670 (725)
                      ++|+.|++++| .++.++. +..+++|+.|++++|+
T Consensus       178 ~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          178 TKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             TTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             CccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence            99999999995 6777765 7889999999999964

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.29  E-value=8.9e-12  Score=118.93  Aligned_cols=128  Identities=19%  Similarity=0.148  Sum_probs=80.4

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      +++++|++++|.+.+..+..+..+++|++|++++|. ++.++. .+..+++|++|++++|......+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            358888888887776656667778888888888854 444543 356778888888887654333333456777888888


Q ss_pred             eccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccc
Q 048826          533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDN  583 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n  583 (725)
                      +++|......+..+..+++|++|++++|. +..++.  ...+++|++|++++|
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence            88776443333346777777777777773 332222  122344555555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.26  E-value=5.1e-11  Score=130.34  Aligned_cols=176  Identities=24%  Similarity=0.279  Sum_probs=136.1

Q ss_pred             CCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeec
Q 048826          478 TSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTI  557 (725)
Q Consensus       478 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  557 (725)
                      .+|+.|++++|. ++.+|..+  +++|++|++++|. +..+|   ..+++|++|++++|... .+|. +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLN-LSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLS-TLPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCC-CCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCC-Ccch-hhc--CCCEEEC
Confidence            389999999964 66688766  4899999999965 55788   44789999999999744 4777 654  9999999


Q ss_pred             CCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCC
Q 048826          558 GKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASL  637 (725)
Q Consensus       558 ~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L  637 (725)
                      ++|. +..++.  .+++|+.|++++|....  +   +.   .+++|+.|++++|  .+..+|. +          . ++|
T Consensus       128 s~N~-l~~lp~--~l~~L~~L~Ls~N~l~~--l---p~---~l~~L~~L~Ls~N--~L~~lp~-l----------~-~~L  182 (571)
T 3cvr_A          128 DNNQ-LTMLPE--LPALLEYINADNNQLTM--L---PE---LPTSLEVLSVRNN--QLTFLPE-L----------P-ESL  182 (571)
T ss_dssp             CSSC-CSCCCC--CCTTCCEEECCSSCCSC--C---CC---CCTTCCEEECCSS--CCSCCCC-C----------C-TTC
T ss_pred             CCCc-CCCCCC--cCccccEEeCCCCccCc--C---CC---cCCCcCEEECCCC--CCCCcch-h----------h-CCC
Confidence            9994 555665  67999999999997532  1   11   5789999999994  4555776 4          2 899


Q ss_pred             cEEEeccCcccccccccccCCcCC-------CeEeccCCCCCcccCCC-CCcccccEEEecCCch
Q 048826          638 TSLWISNFPNLERLSSSIVDLQNL-------TSLYLLDCPKLRYFPEK-GLPSSLLQLHIYRCPL  694 (725)
Q Consensus       638 ~~L~l~~~~~l~~i~~~~~~~~~L-------~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~  694 (725)
                      +.|++++| .++.+|. +..  +|       +.|++++| .++.+|.. ..+++|+.|++++++-
T Consensus       183 ~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          183 EALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             CEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence            99999995 6888887 443  77       99999995 67788874 2378999999999863

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.24  E-value=1.3e-11  Score=136.65  Aligned_cols=165  Identities=15%  Similarity=0.151  Sum_probs=97.9

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      +|+.|++++|.+... + .+..+++|+.|++++|. +..++. +..+++|+.|++++|. +..++ .+..+++|+.|+++
T Consensus        44 ~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           44 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             TCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECT
T ss_pred             CCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEec
Confidence            477777777765432 2 46677777777777753 444443 6677777777777754 34444 45667777777777


Q ss_pred             cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCC
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDD  614 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  614 (725)
                      +|... .+ ..+..+++|+.|++++|. +..++....+++|+.|+|++|....  .    ..+..+++|+.|++++|  .
T Consensus       118 ~N~l~-~l-~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~--~----~~l~~l~~L~~L~Ls~N--~  186 (605)
T 1m9s_A          118 HNGIS-DI-NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISD--I----VPLAGLTKLQNLYLSKN--H  186 (605)
T ss_dssp             TSCCC-CC-GGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCC--C----GGGTTCTTCCEEECCSS--C
T ss_pred             CCCCC-CC-ccccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCC--c----hhhccCCCCCEEECcCC--C
Confidence            77633 33 346677777777777773 3333444455677777777664321  1    11555666666666663  2


Q ss_pred             CccCCCCCcccccCcccCCCCCCcEEEeccCc
Q 048826          615 MVSFPPEPEDVRLGTTLPLPASLTSLWISNFP  646 (725)
Q Consensus       615 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  646 (725)
                      +..++. +         ..+++|+.|++++|+
T Consensus       187 i~~l~~-l---------~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          187 ISDLRA-L---------AGLKNLDVLELFSQE  208 (605)
T ss_dssp             CCBCGG-G---------TTCTTCSEEECCSEE
T ss_pred             CCCChH-H---------ccCCCCCEEEccCCc
Confidence            222221 1         245666666666643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.24  E-value=3.7e-11  Score=115.50  Aligned_cols=130  Identities=13%  Similarity=0.134  Sum_probs=99.9

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCC-CcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEG-GLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~  532 (725)
                      ++++.|++++|.+.+..+..+..+++|+.|++++|......|..+.++++|++|++++|. +..+|.. +..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEE
Confidence            459999999998877767788889999999999966555557788889999999999865 4455544 56788999999


Q ss_pred             eccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchh
Q 048826          533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNME  585 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~  585 (725)
                      +++|......+..+..+++|++|++++|. +..++.  ...+++|++|++++|+.
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence            99998666667778889999999999984 333332  33457788888888753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.20  E-value=7e-12  Score=124.17  Aligned_cols=168  Identities=14%  Similarity=0.086  Sum_probs=111.7

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD  535 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  535 (725)
                      +..++++++...+..  .+..+++|+.|++++| .+..++ .+..+++|++|++++|. +..++. +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCC
Confidence            666777776554432  4667788888988885 556666 57778888888888864 445554 67788888888888


Q ss_pred             ccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCC
Q 048826          536 CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDM  615 (725)
Q Consensus       536 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  615 (725)
                      |.. +.++... . ++|++|++++| .+..++....+++|++|++++|....  +    ..+..+++|+.|++++|  .+
T Consensus        95 N~l-~~l~~~~-~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~--~----~~l~~l~~L~~L~L~~N--~i  162 (263)
T 1xeu_A           95 NRL-KNLNGIP-S-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNKLKS--I----VMLGFLSKLEVLDLHGN--EI  162 (263)
T ss_dssp             SCC-SCCTTCC-C-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSCCCB--C----GGGGGCTTCCEEECTTS--CC
T ss_pred             Ccc-CCcCccc-c-CcccEEEccCC-ccCCChhhcCcccccEEECCCCcCCC--C----hHHccCCCCCEEECCCC--cC
Confidence            873 4454422 2 78888888888 44445555566888888888886432  1    23667778888888774  22


Q ss_pred             ccCCCCCcccccCcccCCCCCCcEEEeccCccccccc
Q 048826          616 VSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS  652 (725)
Q Consensus       616 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~  652 (725)
                      ..+ ..+         ..+++|+.|++++|+ +...|
T Consensus       163 ~~~-~~l---------~~l~~L~~L~l~~N~-~~~~~  188 (263)
T 1xeu_A          163 TNT-GGL---------TRLKKVNWIDLTGQK-CVNEP  188 (263)
T ss_dssp             CBC-TTS---------TTCCCCCEEEEEEEE-EECCC
T ss_pred             cch-HHh---------ccCCCCCEEeCCCCc-ccCCc
Confidence            222 222         256778888887743 44444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.20  E-value=7.1e-11  Score=114.33  Aligned_cols=129  Identities=19%  Similarity=0.155  Sum_probs=101.6

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      ++|+.|++++|.+.+..+..+..+++|+.|++++|. +..+|. .+..+++|++|++++|......+..+..+++|++|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            469999999999888878889999999999999965 566654 467899999999999754433344467889999999


Q ss_pred             eccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchh
Q 048826          533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNME  585 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~  585 (725)
                      +++|. +..+|..+..+++|++|++++| .+..++.  ...+++|++|++++|+.
T Consensus       119 Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          119 MCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             ccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            99998 4578888899999999999998 4444432  34457888888888864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.19  E-value=4.2e-11  Score=132.54  Aligned_cols=171  Identities=19%  Similarity=0.264  Sum_probs=134.3

Q ss_pred             hcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcc
Q 048826          474 LDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQ  553 (725)
Q Consensus       474 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  553 (725)
                      +..+++|+.|++++|. +..++ .+..+++|+.|++++|.. ..++. +..+++|+.|++++|.. ..++ .+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCC-CCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCC
Confidence            4467889999999854 56665 578899999999999754 44443 77899999999999974 4454 689999999


Q ss_pred             eeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCC
Q 048826          554 QLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPL  633 (725)
Q Consensus       554 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~  633 (725)
                      .|++++|. +..++....+++|+.|+|++|....  +    ..+..+++|+.|++++|  .+..+++ +         ..
T Consensus       113 ~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~--l----~~l~~l~~L~~L~Ls~N--~l~~~~~-l---------~~  173 (605)
T 1m9s_A          113 SLSLEHNG-ISDINGLVHLPQLESLYLGNNKITD--I----TVLSRLTKLDTLSLEDN--QISDIVP-L---------AG  173 (605)
T ss_dssp             EEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCC--C----GGGGSCTTCSEEECCSS--CCCCCGG-G---------TT
T ss_pred             EEEecCCC-CCCCccccCCCccCEEECCCCccCC--c----hhhcccCCCCEEECcCC--cCCCchh-h---------cc
Confidence            99999994 4555666677999999999997542  1    35778999999999985  3333333 2         36


Q ss_pred             CCCCcEEEeccCcccccccccccCCcCCCeEeccCCCC
Q 048826          634 PASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPK  671 (725)
Q Consensus       634 ~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~  671 (725)
                      +++|+.|+|++| .+..++ .+..+++|+.|++++|+.
T Consensus       174 l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          174 LTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             CTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred             CCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcC
Confidence            899999999995 577775 478899999999999753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.19  E-value=2.6e-10  Score=110.33  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=40.3

Q ss_pred             ccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccc-cccCCCCCcceeecC
Q 048826          480 LEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALP-KGLHNLTSLQQLTIG  558 (725)
Q Consensus       480 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~  558 (725)
                      .+.++.++ ..++.+|..+.  ++|++|++++|......+..+..+++|++|++++|.. ..++ ..+..+++|++|+++
T Consensus        21 ~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECC
Confidence            34445544 34455554332  5566666666544444444555556666666666653 3333 334556666666666


Q ss_pred             CC
Q 048826          559 KG  560 (725)
Q Consensus       559 ~~  560 (725)
                      +|
T Consensus        97 ~N   98 (229)
T 3e6j_A           97 TN   98 (229)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.19  E-value=3e-10  Score=109.04  Aligned_cols=146  Identities=16%  Similarity=0.222  Sum_probs=70.0

Q ss_pred             EEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCC
Q 048826          482 YINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       482 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  561 (725)
                      .++.++ ..++.+|..+.  ++|+.|++++|......+..+..+++|++|++++|......|..+..+++|++|++++|.
T Consensus        15 ~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRG-KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTT-SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCC-CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            444444 34445554432  456666666644333233345556666666666666444445566666666666666662


Q ss_pred             CCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcE
Q 048826          562 ELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTS  639 (725)
Q Consensus       562 ~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~  639 (725)
                       +..++.  ...+++|++|++++|....  +  .+..+..+++|+.|++++  +.+..++...        +..+++|+.
T Consensus        92 -l~~l~~~~f~~l~~L~~L~L~~N~l~~--~--~~~~~~~l~~L~~L~L~~--N~l~~~~~~~--------~~~l~~L~~  156 (220)
T 2v9t_B           92 -ITELPKSLFEGLFSLQLLLLNANKINC--L--RVDAFQDLHNLNLLSLYD--NKLQTIAKGT--------FSPLRAIQT  156 (220)
T ss_dssp             -CCCCCTTTTTTCTTCCEEECCSSCCCC--C--CTTTTTTCTTCCEEECCS--SCCSCCCTTT--------TTTCTTCCE
T ss_pred             -CCccCHhHccCCCCCCEEECCCCCCCE--e--CHHHcCCCCCCCEEECCC--CcCCEECHHH--------HhCCCCCCE
Confidence             222222  1223444444444443211  0  012344555666666655  2333333321        113455555


Q ss_pred             EEeccC
Q 048826          640 LWISNF  645 (725)
Q Consensus       640 L~l~~~  645 (725)
                      |++++|
T Consensus       157 L~L~~N  162 (220)
T 2v9t_B          157 MHLAQN  162 (220)
T ss_dssp             EECCSS
T ss_pred             EEeCCC
Confidence            555553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.16  E-value=2.5e-11  Score=111.37  Aligned_cols=138  Identities=17%  Similarity=0.128  Sum_probs=75.9

Q ss_pred             CCCccEEEecCCCCc-ccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCccee
Q 048826          477 NTSLEYINISNCENL-KILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQL  555 (725)
Q Consensus       477 l~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  555 (725)
                      .++|+.|++++|... ..+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            345666666554432 2455555556666666666654 3333 445556666666666666444355545556666666


Q ss_pred             ecCCCCCCCCc---ccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCC
Q 048826          556 TIGKGGELPSL---EEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPP  620 (725)
Q Consensus       556 ~l~~~~~l~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~  620 (725)
                      ++++|. +..+   .....+++|++|++++|+..... ......+..+++|+.|++++|  ....+|.
T Consensus       101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~n--~~~~~~~  164 (168)
T 2ell_A          101 NLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYDR--EDQEAPD  164 (168)
T ss_dssp             ECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEET--TSCBCCS
T ss_pred             eccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCCC--Chhhccc
Confidence            666663 3322   23344566777777776543211 000024667888888888884  3444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.16  E-value=5.5e-11  Score=123.92  Aligned_cols=129  Identities=12%  Similarity=-0.006  Sum_probs=65.9

Q ss_pred             CccEEEEecccchhhhhhhhc-CCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          455 SLKSLSVYGCSKLESIAERLD-NNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      .++.|+|++|.+.+..+..+. .+++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            356666666655554444444 5666666666654322222334555666666666664432222334455566666666


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCcccC-----CCcccccceecccch
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEED-----GLPTNLHSLWIEDNM  584 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-----~~~~~L~~L~l~~n~  584 (725)
                      ++|......+..+..+++|++|++++|. +..++..     ..+++|+.|++++|.
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            6665444334555566666666666652 2222221     224555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.16  E-value=1.4e-10  Score=111.41  Aligned_cols=129  Identities=14%  Similarity=0.012  Sum_probs=81.1

Q ss_pred             CccEEEEecccchhhhh-hhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          455 SLKSLSVYGCSKLESIA-ERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      .+++|++++|.+.+..+ ..+..+++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            46777777776665533 34667777777777775433323335677777777777776554444444666777777777


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCc-c-cCCCcccccceecccch
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSL-E-EDGLPTNLHSLWIEDNM  584 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~-~~~~~~~L~~L~l~~n~  584 (725)
                      ++|......|..+..+++|++|++++|. +..+ + ....+++|++|++++|+
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence            7777555556667777777777777773 3322 1 13334666666666664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.14  E-value=4.1e-11  Score=118.61  Aligned_cols=140  Identities=20%  Similarity=0.259  Sum_probs=74.3

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      +|+.|++++|.+.. ++ .+..+++|+.|++++| .+..++. +..+++|++|++++|. ++.++....  ++|+.|+++
T Consensus        42 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L~  114 (263)
T 1xeu_A           42 GVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFLD  114 (263)
T ss_dssp             TCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEECC
T ss_pred             cCcEEECcCCCccc-ch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEcc
Confidence            46666666664433 22 4555666666666663 3444443 5566666666666643 333443222  566666666


Q ss_pred             cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      +|.. +.++ .+..+++|+.|++++|. +..++....+++|++|++++|.....      ..+..+++|+.|++++
T Consensus       115 ~N~l-~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          115 NNEL-RDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             SSCC-SBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEE
T ss_pred             CCcc-CCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCC
Confidence            6653 2332 35566666666666662 33334444456666666666643211      2345566666666665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.12  E-value=1.7e-10  Score=120.21  Aligned_cols=101  Identities=14%  Similarity=0.043  Sum_probs=55.0

Q ss_pred             cEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-cccc-CCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          457 KSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLH-NLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       457 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      +.++++++... .+|..+  .+.++.|++++|. ++.++ ..+. .+++|++|++++|......+..+..+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC--CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            45666665333 334332  2346677776643 33333 2333 56677777776654333333456666667777776


Q ss_pred             cccCccccccccCCCCCcceeecCCCC
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~  561 (725)
                      +|......+..+..+++|++|++++|.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~  123 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNH  123 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCc
Confidence            666433333345666666666666663

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.11  E-value=3.5e-10  Score=108.66  Aligned_cols=108  Identities=11%  Similarity=0.122  Sum_probs=93.1

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      ++|+.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|......|..+..+++|++|++
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  136 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL  136 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred             CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence            46999999999888877778999999999999996654444556889999999999998766666788889999999999


Q ss_pred             ccccCccccccccCCCCCcceeecCCCC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~  561 (725)
                      ++|......|..+..+++|++|++++|+
T Consensus       137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          137 YDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            9998766668889999999999999995

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.08  E-value=5.4e-10  Score=102.38  Aligned_cols=129  Identities=18%  Similarity=0.168  Sum_probs=82.9

Q ss_pred             CCccEEEEecccch-hhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKL-ESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      ++|++|++++|.+. +.++..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45777777777665 4556666777777777777754 4444 5566777777777777655444555555577777777


Q ss_pred             eccccCccccc--cccCCCCCcceeecCCCCCCCCcc----cCCCcccccceecccchh
Q 048826          533 ILDCKRLEALP--KGLHNLTSLQQLTIGKGGELPSLE----EDGLPTNLHSLWIEDNME  585 (725)
Q Consensus       533 l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~----~~~~~~~L~~L~l~~n~~  585 (725)
                      +++|.. +.++  ..+..+++|++|++++|......+    ....+++|++|++++|..
T Consensus       102 Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          102 LSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            777763 3433  566777777777777773222111    233457777777777743

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.08  E-value=5.2e-11  Score=106.77  Aligned_cols=128  Identities=18%  Similarity=0.114  Sum_probs=58.1

Q ss_pred             CCccEEEecCCCCc-ccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceee
Q 048826          478 TSLEYINISNCENL-KILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLT  556 (725)
Q Consensus       478 ~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  556 (725)
                      ++|+.|++++|... ..+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34444444443322 2344444444555555555432 2222 3344445555555555543333444444455555555


Q ss_pred             cCCCCCCCCc---ccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEee
Q 048826          557 IGKGGELPSL---EEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTII  609 (725)
Q Consensus       557 l~~~~~l~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~  609 (725)
                      +++|. +..+   .....+++|++|++++|+..... ......+..+++|+.|+++
T Consensus        95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLN-DYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGST-THHHHHHHHCTTCCEETTB
T ss_pred             CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchH-HHHHHHHHHCCCcccccCC
Confidence            55553 2221   22333455666666655432110 0000235667777777765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.03  E-value=2.9e-12  Score=140.93  Aligned_cols=197  Identities=14%  Similarity=0.078  Sum_probs=118.5

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCC-------------CcccccccccCCCcccEEE-eccCCCccccC
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCE-------------NLKILPSGLHNLRQLQEIT-IQRCGNLESFP  519 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~l~~~~~~l~~L~~L~-l~~~~~~~~~~  519 (725)
                      ++|+.|++++|.. +.+|..++.+++|+.|++++|.             .....|..+..+++|+.|+ ++.+ .+    
T Consensus       349 ~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~----  422 (567)
T 1dce_A          349 EQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YL----  422 (567)
T ss_dssp             TTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HH----
T ss_pred             ccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-cc----
Confidence            4688899998754 5778888888899999886643             2223344455556666665 3321 11    


Q ss_pred             CCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccc
Q 048826          520 EGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHR  599 (725)
Q Consensus       520 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  599 (725)
                            .+|+.+.+.+|. +..++.     ..|+.|++++| .+..++..+.+++|+.|++++|...     ..|..+..
T Consensus       423 ------~~L~~l~l~~n~-i~~l~~-----~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~  484 (567)
T 1dce_A          423 ------DDLRSKFLLENS-VLKMEY-----ADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLR-----ALPPALAA  484 (567)
T ss_dssp             ------HHHHHHHHHHHH-HHHHHH-----TTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSCCC-----CCCGGGGG
T ss_pred             ------chhhhhhhhccc-ccccCc-----cCceEEEecCC-CCCCCcCccccccCcEeecCccccc-----ccchhhhc
Confidence                  122333333332 112221     23666666666 3344444445566666666666443     12245677


Q ss_pred             cCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccc--cccccCCcCCCeEeccCCCCCcccCC
Q 048826          600 FSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERL--SSSIVDLQNLTSLYLLDCPKLRYFPE  677 (725)
Q Consensus       600 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i--~~~~~~~~~L~~L~l~~c~~l~~l~~  677 (725)
                      +++|+.|++++  +.+..+| .+         ..+++|+.|++++| .++.+  |..+..+++|+.|++++|+ ++.+++
T Consensus       485 l~~L~~L~Ls~--N~l~~lp-~l---------~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~  550 (567)
T 1dce_A          485 LRCLEVLQASD--NALENVD-GV---------ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEG  550 (567)
T ss_dssp             CTTCCEEECCS--SCCCCCG-GG---------TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSS
T ss_pred             CCCCCEEECCC--CCCCCCc-cc---------CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCcc
Confidence            78888888887  3444455 33         26788888888884 46665  7777888888888888854 555554


Q ss_pred             CCC-----cccccEEE
Q 048826          678 KGL-----PSSLLQLH  688 (725)
Q Consensus       678 ~~~-----~~~L~~L~  688 (725)
                      ...     +|+|+.|+
T Consensus       551 ~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          551 IQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CTTHHHHHCTTCSEEE
T ss_pred             HHHHHHHHCcccCccC
Confidence            321     46777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.03  E-value=2.9e-10  Score=101.82  Aligned_cols=126  Identities=19%  Similarity=0.202  Sum_probs=88.1

Q ss_pred             CCccEEEEecccch-hhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKL-ESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      ++++.|++++|.+. +.++..+..+++|+.|++++| .+..+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            46888888888776 466777778888888888885 44444 5677788888888888765555666566678888888


Q ss_pred             eccccCccc-cccccCCCCCcceeecCCCCCCCCccc-----CCCcccccceeccc
Q 048826          533 ILDCKRLEA-LPKGLHNLTSLQQLTIGKGGELPSLEE-----DGLPTNLHSLWIED  582 (725)
Q Consensus       533 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~  582 (725)
                      +++|..... .+..+..+++|++|++++|. +...+.     ...+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence            888874331 23667888888888888883 333222     33457788877753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=1.8e-09  Score=110.79  Aligned_cols=77  Identities=13%  Similarity=0.129  Sum_probs=41.2

Q ss_pred             cCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCC-eEeccCCCCCcccCC
Q 048826          600 FSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLT-SLYLLDCPKLRYFPE  677 (725)
Q Consensus       600 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~-~L~l~~c~~l~~l~~  677 (725)
                      +++|+.|++++  +.+..++...        |..+++|++|++.++  ++.|+. .|..+++|+ .+++.+  .++.+++
T Consensus       225 ~~~L~~l~L~~--n~i~~I~~~a--------F~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~  290 (329)
T 3sb4_A          225 MPNLVSLDISK--TNATTIPDFT--------FAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF  290 (329)
T ss_dssp             CTTCCEEECTT--BCCCEECTTT--------TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT
T ss_pred             cCCCeEEECCC--CCcceecHhh--------hhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch
Confidence            55666666665  2344444433        235566666666652  555543 345566666 666654  4555555


Q ss_pred             CCC--cccccEEEec
Q 048826          678 KGL--PSSLLQLHIY  690 (725)
Q Consensus       678 ~~~--~~~L~~L~l~  690 (725)
                      ..+  .++|+.+++.
T Consensus       291 ~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          291 GAFMGCDNLRYVLAT  305 (329)
T ss_dssp             TTTTTCTTEEEEEEC
T ss_pred             hhhhCCccCCEEEeC
Confidence            444  3456666553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.00  E-value=8.7e-12  Score=137.19  Aligned_cols=125  Identities=18%  Similarity=0.182  Sum_probs=78.1

Q ss_pred             CCccEEEEeccc-------------chhhhhhhhcCCCCccEEE-ecCCCCcccccc------cccC--CCcccEEEecc
Q 048826          454 PSLKSLSVYGCS-------------KLESIAERLDNNTSLEYIN-ISNCENLKILPS------GLHN--LRQLQEITIQR  511 (725)
Q Consensus       454 ~~L~~L~L~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~l~~------~~~~--l~~L~~L~l~~  511 (725)
                      ++|+.|++++|.             ..+..|..++.+++|+.|+ ++. +.+..++.      .+..  ...|+.|++++
T Consensus       372 ~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~  450 (567)
T 1dce_A          372 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLDDLRSKFLLENSVLKMEYADVRVLHLAH  450 (567)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTT
T ss_pred             HHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccchhhhhhhhcccccccCccCceEEEecC
Confidence            468888887664             4556677788888899888 444 22222211      0111  12577888887


Q ss_pred             CCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccc
Q 048826          512 CGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDN  583 (725)
Q Consensus       512 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n  583 (725)
                      | .++.+|. +..+++|+.|++++|.. +.+|..+..+++|+.|++++|. +..++..+.+++|++|++++|
T Consensus       451 n-~l~~lp~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          451 K-DLTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNN  518 (567)
T ss_dssp             S-CCSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSS
T ss_pred             C-CCCCCcC-ccccccCcEeecCcccc-cccchhhhcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCCC
Confidence            5 4455775 77778888888888874 4777778888888888888873 333443333444445544444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=2.9e-09  Score=109.35  Aligned_cols=119  Identities=14%  Similarity=0.187  Sum_probs=63.0

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCC-CCcCcCcCc-ee
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLT-RL  531 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~-~L  531 (725)
                      ++..+.+.+.-...........+++|+.+++++|. ++.+|. .+.++++|+++++.++  +..++. .+..|++|+ .+
T Consensus       203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l  279 (329)
T 3sb4_A          203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL  279 (329)
T ss_dssp             GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred             ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence            35555555542222222222236677777776633 444443 3556677777777664  444443 455666676 77


Q ss_pred             eeccccCcccc-ccccCCCCCcceeecCCCCCCCCccc--CCCccccccee
Q 048826          532 TILDCKRLEAL-PKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLW  579 (725)
Q Consensus       532 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~  579 (725)
                      ++.+ . ++.+ +..|..|++|+.++++++ .+..++.  ...+++|+.+.
T Consensus       280 ~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          280 ELPA-S-VTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECT-T-CCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             EEcc-c-ceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence            7766 2 3333 345666777777777655 2333322  22245666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.98  E-value=1.7e-09  Score=101.36  Aligned_cols=107  Identities=15%  Similarity=0.126  Sum_probs=85.0

Q ss_pred             CccEEEEecccchhhhhh-hhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          455 SLKSLSVYGCSKLESIAE-RLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      ++++|++++|.+.+..+. .++.+++|++|++++|......|..+..+++|++|++++|......+..+..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            588999999877665543 4788899999999986555555777888899999999987665555556778889999999


Q ss_pred             ccccCccccccccCCCCCcceeecCCCC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~  561 (725)
                      ++|......|..+..+++|++|++++|+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            9998766667788888899999998884

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.92  E-value=1.4e-09  Score=100.49  Aligned_cols=143  Identities=15%  Similarity=0.140  Sum_probs=101.6

Q ss_pred             cccCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCC
Q 048826           23 LDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGND  102 (725)
Q Consensus        23 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~  102 (725)
                      ...+..+.+|++|+++++....+|....  ..++|++|++++| .++.++.++.+++|++|++++|. +..+++.+++  
T Consensus        12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~--~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~--   85 (176)
T 1a9n_A           12 AAQYTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQ--   85 (176)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGG--GTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCHHH--
T ss_pred             HHhcCCcCCceEEEeeCCCCchhHHhhh--cCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCc-ccccCcchhh--
Confidence            3456778999999999999888865332  2459999999998 78888779999999999999997 7888765432  


Q ss_pred             CCCCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcc
Q 048826          103 SSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPAL  182 (725)
Q Consensus       103 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L  182 (725)
                         .+++|++|+++++ .+..+..   ...+..+++|++|++++| .++ .+|..              ....+..+++|
T Consensus        86 ---~l~~L~~L~L~~N-~i~~~~~---~~~l~~l~~L~~L~l~~N-~i~-~~~~~--------------~~~~~~~l~~L  142 (176)
T 1a9n_A           86 ---ALPDLTELILTNN-SLVELGD---LDPLASLKSLTYLCILRN-PVT-NKKHY--------------RLYVIYKVPQV  142 (176)
T ss_dssp             ---HCTTCCEEECCSC-CCCCGGG---GGGGGGCTTCCEEECCSS-GGG-GSTTH--------------HHHHHHHCTTC
T ss_pred             ---cCCCCCEEECCCC-cCCcchh---hHhhhcCCCCCEEEecCC-CCC-CcHhH--------------HHHHHHHCCcc
Confidence               2789999999985 5555421   124567888888888887 343 33321              01135566677


Q ss_pred             cEEEecCCCcee
Q 048826          183 CKLKIYGCKKVV  194 (725)
Q Consensus       183 ~~L~l~~~~~~~  194 (725)
                      +.|++++|....
T Consensus       143 ~~Ld~~~n~~~~  154 (176)
T 1a9n_A          143 RVLDFQKVKLKE  154 (176)
T ss_dssp             SEETTEECCHHH
T ss_pred             ceeCCCcCCHHH
Confidence            777777665443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.90  E-value=5.8e-09  Score=97.68  Aligned_cols=107  Identities=18%  Similarity=0.144  Sum_probs=75.9

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      +++++|++++|.+. .+|..+..+++|+.|++++|......+..+.++++|++|++++|......+..+..+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            35888888888665 45577888888888888885544333455778888888888886654444556777788888888


Q ss_pred             ccccCccccccccCCCCCcceeecCCCC
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~  561 (725)
                      ++|......+..+..+++|+.|++++|+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            8887443333356777888888888774

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.88  E-value=5.1e-09  Score=98.06  Aligned_cols=126  Identities=15%  Similarity=0.069  Sum_probs=86.3

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc--cccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS--GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      -+.++++++.+ +.+|..+.  .+++.|++++| .+..++.  .+..+++|++|++++|......|..+..+++|++|++
T Consensus        10 ~~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           10 GTTVDCTGRGL-KEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCC-SSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEcCCCCc-CcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            35677777654 44454333  37888888885 4555543  3678888888888887666556777888888888888


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCcc-cCCCcccccceecccchh
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE-EDGLPTNLHSLWIEDNME  585 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~n~~  585 (725)
                      ++|......+..+..+++|++|++++|......+ ....+++|++|++++|+.
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            8888655555567888888888888884322212 233457777788877753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.86  E-value=7.2e-09  Score=97.03  Aligned_cols=124  Identities=14%  Similarity=0.108  Sum_probs=90.0

Q ss_pred             cEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccc
Q 048826          457 KSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDC  536 (725)
Q Consensus       457 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  536 (725)
                      +.++++++.+. .+|..+  .++|+.|++++| .++.+|..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45666665433 344433  368999999985 56678888888999999999987655555566788899999999999


Q ss_pred             cCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchh
Q 048826          537 KRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNME  585 (725)
Q Consensus       537 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~  585 (725)
                      ......+..+..+++|++|++++|. +..++.  ...+++|+.|++++|+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence            8655555678889999999999984 444433  33457888888887753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.86  E-value=1.1e-08  Score=94.43  Aligned_cols=106  Identities=17%  Similarity=0.116  Sum_probs=73.2

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      ++|++|++++|.+.+..+..+..+++|++|++++|. ++.++. .+..+++|++|++++|......+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            358888888887766555567778888888888854 444543 356788888888888654433333456777888888


Q ss_pred             eccccCcccccc-ccCCCCCcceeecCCCC
Q 048826          533 ILDCKRLEALPK-GLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       533 l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~  561 (725)
                      +++|... .+|. .+..+++|++|++++|+
T Consensus       107 l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          107 LDTNQLK-SVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCCcce-EeCHHHhcCCcccCEEEecCCC
Confidence            8888644 4444 34677888888888774

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.86  E-value=2e-09  Score=99.42  Aligned_cols=125  Identities=19%  Similarity=0.157  Sum_probs=71.7

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCC-cCcCcCceeee
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGG-LLCAKLTRLTI  533 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l  533 (725)
                      +|+.|++++|.+.. ++......++|+.|++++|. ++.+ ..+..+++|++|++++|. +..+|... ..+++|++|++
T Consensus        20 ~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           20 RDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             SCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEEC
T ss_pred             CceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEEC
Confidence            47777777775553 33322223377777777743 4444 456667777777777754 34444333 56667777777


Q ss_pred             ccccCcccccc--ccCCCCCcceeecCCCCCCCCccc-----CCCcccccceecccchh
Q 048826          534 LDCKRLEALPK--GLHNLTSLQQLTIGKGGELPSLEE-----DGLPTNLHSLWIEDNME  585 (725)
Q Consensus       534 ~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~n~~  585 (725)
                      ++|.. +.+|.  .+..+++|++|++++|+. ..++.     ...+++|+.|++++|..
T Consensus        96 ~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           96 TNNSL-VELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CSCCC-CCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCcC-CcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            77763 45554  566677777777777632 22221     22345666666666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.81  E-value=2.3e-09  Score=121.73  Aligned_cols=109  Identities=19%  Similarity=0.198  Sum_probs=54.2

Q ss_pred             ccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCccc-CCCc
Q 048826          494 LPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE-DGLP  572 (725)
Q Consensus       494 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~  572 (725)
                      .+..+..++.|+.|++++|. +..+|..+..+++|++|++++|... .+|..+..+++|++|+|++|. +..++. .+.+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence            34455566666666666644 3355555556666666666666533 566666666666666666663 223321 2223


Q ss_pred             ccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          573 TNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       573 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      ++|++|+|++|...  .   .+..+..+++|+.|++++
T Consensus       293 ~~L~~L~L~~N~l~--~---lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT--T---LPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             TTCSEEECCSSCCC--C---CCSSTTSCTTCCCEECTT
T ss_pred             CCCCEEECCCCCCC--c---cChhhhcCCCccEEeCCC
Confidence            44444444444221  1   112344555555555555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.78  E-value=2.2e-09  Score=121.90  Aligned_cols=113  Identities=16%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             hhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCC
Q 048826          469 SIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHN  548 (725)
Q Consensus       469 ~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  548 (725)
                      ..+..+..+++|+.|++++|. +..+|..+..+++|++|+|++|. +..+|..+..+++|++|++++|... .+|..+..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            345556667777777777643 44666666667777777777754 3366666667777777777777633 66666777


Q ss_pred             CCCcceeecCCCCCCCCccc-CCCcccccceecccchh
Q 048826          549 LTSLQQLTIGKGGELPSLEE-DGLPTNLHSLWIEDNME  585 (725)
Q Consensus       549 l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~n~~  585 (725)
                      +++|++|+|++| .+..++. .+.+++|++|+|++|..
T Consensus       292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence            777777777776 3334433 34456777777777754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.78  E-value=1.2e-10  Score=110.10  Aligned_cols=146  Identities=16%  Similarity=0.213  Sum_probs=103.3

Q ss_pred             ccEEEEeccc-chhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          456 LKSLSVYGCS-KLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       456 L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      ++...+.+.. ..+.++..+..+++|++|++++| .+..+| .+..+++|++|++++|. +..+|..+..+++|++|+++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECc
Confidence            5555555431 13334557888999999999985 455677 77889999999999964 55788767777899999999


Q ss_pred             cccCccccccccCCCCCcceeecCCCCCCCCcc---cCCCcccccceecccchhhHHHH------hhccccccccCCCcE
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE---EDGLPTNLHSLWIEDNMEIWKSM------IERGRGFHRFSSLRR  605 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~n~~~~~~~------~~~~~~~~~l~~L~~  605 (725)
                      +|.. ..+| .+..+++|++|++++|. +..++   ....+++|++|++++|+......      ......+..+++|+.
T Consensus       102 ~N~l-~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~  178 (198)
T 1ds9_A          102 YNQI-ASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             EEEC-CCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred             CCcC-CcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence            9974 4465 57888999999999984 33322   34556899999999997643210      000123667888888


Q ss_pred             EE
Q 048826          606 LT  607 (725)
Q Consensus       606 L~  607 (725)
                      |+
T Consensus       179 Ld  180 (198)
T 1ds9_A          179 LD  180 (198)
T ss_dssp             EC
T ss_pred             EC
Confidence            86

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.76  E-value=2.8e-07  Score=96.59  Aligned_cols=211  Identities=10%  Similarity=0.110  Sum_probs=130.4

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCC-CCcCcCcCceeee
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTI  533 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l  533 (725)
                      +|+.+.+.+ .........|..+++|+.+++.+ +.+..++.....+.+|+.+.+..+  +..++. .+..|++|+.+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence            377777665 23333445677777788888876 355556555444677777777642  444443 4566777888877


Q ss_pred             ccccCcccccc-ccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhH---HHHhhccccccccCCCcEEE
Q 048826          534 LDCKRLEALPK-GLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIW---KSMIERGRGFHRFSSLRRLT  607 (725)
Q Consensus       534 ~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~---~~~~~~~~~~~~l~~L~~L~  607 (725)
                      .++  ++.+.. .|.. .+|+.+.+.++  +..++.  ...+++|+++++.++....   ..+.  ...|..+++|+.+.
T Consensus       234 ~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~--~~aF~~c~~L~~l~  306 (401)
T 4fdw_A          234 PEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH--PYCLEGCPKLARFE  306 (401)
T ss_dssp             CTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC--TTTTTTCTTCCEEC
T ss_pred             CCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEEC--HHHhhCCccCCeEE
Confidence            664  344433 3344 67777777443  333322  2345778888777654310   0122  26688888999888


Q ss_pred             eecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCCCCcccCCCCC---ccc
Q 048826          608 IINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCPKLRYFPEKGL---PSS  683 (725)
Q Consensus       608 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~  683 (725)
                      +.+   .+..++...        |..+++|+.+.+.+  +++.|.. .+..+ +|+.+++.++ .+..++...+   +..
T Consensus       307 l~~---~i~~I~~~a--------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~  371 (401)
T 4fdw_A          307 IPE---SIRILGQGL--------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDD  371 (401)
T ss_dssp             CCT---TCCEECTTT--------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTT
T ss_pred             eCC---ceEEEhhhh--------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCC
Confidence            875   344555443        34678899999965  3666654 56778 8999999885 4455554432   457


Q ss_pred             ccEEEecC
Q 048826          684 LLQLHIYR  691 (725)
Q Consensus       684 L~~L~l~~  691 (725)
                      +.+|.+-.
T Consensus       372 l~~l~vp~  379 (401)
T 4fdw_A          372 ITVIRVPA  379 (401)
T ss_dssp             CCEEEECG
T ss_pred             ccEEEeCH
Confidence            88888776

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.74  E-value=7.8e-07  Score=93.23  Aligned_cols=123  Identities=11%  Similarity=0.135  Sum_probs=72.6

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCc----ccc-cccccCCCcccEEEeccCCCccccCC-CCcCcCcCc
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENL----KIL-PSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLT  529 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~  529 (725)
                      |+.+.+.++ ........|..+++|+.+++.++...    ..+ +..+.++++|+.+.+..  .+..++. .+..|.+|+
T Consensus       250 L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          250 ITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCC
T ss_pred             ccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCcc
Confidence            555555332 33333455666777777777653221    123 34566778888888774  2455543 456677888


Q ss_pred             eeeeccccCcccc-ccccCCCCCcceeecCCCCCCCCc---ccCCCcccccceecccchh
Q 048826          530 RLTILDCKRLEAL-PKGLHNLTSLQQLTIGKGGELPSL---EEDGLPTNLHSLWIEDNME  585 (725)
Q Consensus       530 ~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~L~~L~l~~n~~  585 (725)
                      .+++..+  ++.+ ...|..+ +|+.+++.++.. ..+   .+.+...+++.|.+-.+..
T Consensus       327 ~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~-~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          327 QLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTP-PQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             EEEECTT--CCEECTTSSSSS-CCCEEEECCSSC-CBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCC-cccccccccCCCCCccEEEeCHHHH
Confidence            8888554  3334 3456777 888888888732 222   2233335788888887753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.72  E-value=6.3e-08  Score=89.29  Aligned_cols=124  Identities=19%  Similarity=0.212  Sum_probs=84.3

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccC-CCCcCcCcCceeee
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFP-EGGLLCAKLTRLTI  533 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l  533 (725)
                      .+.++++++.... +|..  ..++|+.|++++|. ++.++. .+..+++|++|++++|.. ..++ ..+..+++|++|++
T Consensus         9 ~~~l~~~~~~l~~-~p~~--~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTG--IPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCSS-CCTT--CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCcc-CCCC--CCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEEC
Confidence            4566666664433 3332  23689999999865 445544 457889999999998654 4444 34578889999999


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchh
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNME  585 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~  585 (725)
                      ++|......+..+..+++|++|++++|. +..++.  ...+++|++|++++|+.
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence            9987554444456788899999998883 444443  23457788888888753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.66  E-value=1.4e-06  Score=91.68  Aligned_cols=93  Identities=16%  Similarity=0.173  Sum_probs=43.1

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCccccCC-CCcCcCcCceee
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLT  532 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~  532 (725)
                      +|+.+.+.++ .......+|..+.+|+.+++..  .++.++ ..+.++.+|+.+.+..+  +..++. .+..|.+|+.++
T Consensus       298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVE  372 (394)
T ss_dssp             TCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEE
T ss_pred             cccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEE
Confidence            3555555432 2222233455556666666643  233332 23445566666665432  333332 344555666665


Q ss_pred             eccccCccccccccCCCCCcce
Q 048826          533 ILDCKRLEALPKGLHNLTSLQQ  554 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L~~  554 (725)
                      +..+  .+.+...|..+++|+.
T Consensus       373 lp~~--~~~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          373 LPKR--LEQYRYDFEDTTKFKW  392 (394)
T ss_dssp             EEGG--GGGGGGGBCTTCEEEE
T ss_pred             ECCC--CEEhhheecCCCCCcE
Confidence            5443  2233334455555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.64  E-value=4.9e-10  Score=105.75  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=55.0

Q ss_pred             ccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCC
Q 048826          492 KILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGL  571 (725)
Q Consensus       492 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  571 (725)
                      +.+|..+..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|..+..+++|++|++++| .+..++....
T Consensus        38 ~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~~  113 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLSGIEK  113 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHHHHHH
T ss_pred             hhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCCcccc
Confidence            3344467778888888888754 44566 66777788888888876 3456665566667777777776 3333332233


Q ss_pred             cccccceecccch
Q 048826          572 PTNLHSLWIEDNM  584 (725)
Q Consensus       572 ~~~L~~L~l~~n~  584 (725)
                      +++|++|++++|.
T Consensus       114 l~~L~~L~l~~N~  126 (198)
T 1ds9_A          114 LVNLRVLYMSNNK  126 (198)
T ss_dssp             HHHSSEEEESEEE
T ss_pred             CCCCCEEECCCCc
Confidence            3455555555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.56  E-value=1.7e-07  Score=85.64  Aligned_cols=102  Identities=18%  Similarity=0.186  Sum_probs=54.6

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCC-CCcCcCcCceeeec
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTIL  534 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~  534 (725)
                      .+.++++++.... +|..+  .++|+.|++++|......|..+..+++|++|++++|. +..++. .+..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence            4455555543332 33322  2556666666643333334455666666666666643 333333 34566666666666


Q ss_pred             cccCccccccccCCCCCcceeecCCCC
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~  561 (725)
                      +|......+..+..+++|++|++++|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            665433233346666677777776663

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.53  E-value=5.7e-06  Score=86.92  Aligned_cols=206  Identities=16%  Similarity=0.133  Sum_probs=102.5

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccc-cccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKIL-PSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      +|+.+.+.++ ........|..+.+|+.+.+..+  +..+ ...+.++..|+.+.+..+  ...+...+....+|+.+.+
T Consensus       163 ~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~i  237 (394)
T 4fs7_A          163 SLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIII  237 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEE
T ss_pred             CCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEE
Confidence            4555555442 22222344556666666666542  3333 223445666666655432  2233334444456666666


Q ss_pred             ccccCcccc-ccccCCCCCcceeecCCCCC-CCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826          534 LDCKRLEAL-PKGLHNLTSLQQLTIGKGGE-LPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC  611 (725)
Q Consensus       534 ~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~  611 (725)
                      .+..  ..+ ...+..+..|+.+.+..+.. +.. .....+..++.+......     +..  ..+..+.+|+.+.+.. 
T Consensus       238 p~~~--~~i~~~~f~~~~~l~~~~~~~~~~~i~~-~~F~~~~~l~~~~~~~~~-----i~~--~~F~~~~~L~~i~l~~-  306 (394)
T 4fs7_A          238 PDSF--TELGKSVFYGCTDLESISIQNNKLRIGG-SLFYNCSGLKKVIYGSVI-----VPE--KTFYGCSSLTEVKLLD-  306 (394)
T ss_dssp             CTTC--CEECSSTTTTCSSCCEEEECCTTCEECS-CTTTTCTTCCEEEECSSE-----ECT--TTTTTCTTCCEEEECT-
T ss_pred             CCCc--eecccccccccccceeEEcCCCcceeec-cccccccccceeccCcee-----ecc--cccccccccccccccc-
Confidence            4432  222 22445666666666655421 111 111223455555544431     111  4456667777776654 


Q ss_pred             CCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCCCCcccCCCCC--cccccEEE
Q 048826          612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCPKLRYFPEKGL--PSSLLQLH  688 (725)
Q Consensus       612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~  688 (725)
                        .+..++...        |....+|+.+.+.+  .++.|.. ++..+.+|+.+++...  ++.+....+  .++|+.+.
T Consensus       307 --~i~~I~~~a--------F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          307 --SVKFIGEEA--------FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVE  372 (394)
T ss_dssp             --TCCEECTTT--------TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEE
T ss_pred             --ccceechhh--------hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEE
Confidence              233333322        23566777777754  3555543 4566677777777642  566665544  25666666


Q ss_pred             ec
Q 048826          689 IY  690 (725)
Q Consensus       689 l~  690 (725)
                      +.
T Consensus       373 lp  374 (394)
T 4fs7_A          373 LP  374 (394)
T ss_dssp             EE
T ss_pred             EC
Confidence            64

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.52  E-value=2.6e-07  Score=84.65  Aligned_cols=100  Identities=20%  Similarity=0.275  Sum_probs=55.8

Q ss_pred             cEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCC-CcCcCcCceeeecc
Q 048826          457 KSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEG-GLLCAKLTRLTILD  535 (725)
Q Consensus       457 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~  535 (725)
                      +.++++++.. +.+|..+.  ++|+.|++++|......|..+.++++|++|++++| .+..+|.. +..+++|++|++++
T Consensus        15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence            4455555433 33333332  56666666664433333455666666667776664 33444433 35666777777777


Q ss_pred             ccCcccccc-ccCCCCCcceeecCCCC
Q 048826          536 CKRLEALPK-GLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       536 ~~~~~~~~~-~~~~l~~L~~L~l~~~~  561 (725)
                      |... .+|. .+..+++|++|++++|+
T Consensus        91 N~l~-~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           91 NHLK-SIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             SCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred             Cccc-eeCHHHhccccCCCEEEeCCCC
Confidence            6633 3443 36667777777777763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.48  E-value=5.1e-07  Score=82.37  Aligned_cols=103  Identities=20%  Similarity=0.177  Sum_probs=76.0

Q ss_pred             CccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecC
Q 048826          479 SLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIG  558 (725)
Q Consensus       479 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  558 (725)
                      ..+.+++++ +.++.+|..+  .++|++|++++|......|..+..+++|++|++++|......+..+..+++|++|+++
T Consensus        10 ~~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSG-KSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCC-CCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            357888988 5677788766  4889999999976555557778888999999999998554444456889999999999


Q ss_pred             CCCCCCCccc--CCCcccccceecccchh
Q 048826          559 KGGELPSLEE--DGLPTNLHSLWIEDNME  585 (725)
Q Consensus       559 ~~~~l~~~~~--~~~~~~L~~L~l~~n~~  585 (725)
                      +|. +..++.  ...+++|++|++++|+.
T Consensus        87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            984 444433  34457888888888753

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.45  E-value=7.2e-07  Score=81.68  Aligned_cols=101  Identities=21%  Similarity=0.196  Sum_probs=71.9

Q ss_pred             ccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcccccc-ccCCCCCcceeecC
Q 048826          480 LEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPK-GLHNLTSLQQLTIG  558 (725)
Q Consensus       480 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~  558 (725)
                      -+.+++++ +.++.+|..+.  ++|++|++++|......|..+..+++|++|++++|.. ..+|. .+..+++|++|+++
T Consensus        14 ~~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCC-CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECC
Confidence            36788887 45677887663  7889999998765555566778888899999988874 44554 45788888999988


Q ss_pred             CCCCCCCccc--CCCcccccceecccchh
Q 048826          559 KGGELPSLEE--DGLPTNLHSLWIEDNME  585 (725)
Q Consensus       559 ~~~~l~~~~~--~~~~~~L~~L~l~~n~~  585 (725)
                      +|. +..++.  ...+++|++|++++|+.
T Consensus        90 ~N~-l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           90 DNH-LKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             SSC-CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             CCc-cceeCHHHhccccCCCEEEeCCCCc
Confidence            883 344333  33457777777777753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.39  E-value=2.7e-08  Score=103.36  Aligned_cols=106  Identities=16%  Similarity=0.109  Sum_probs=52.9

Q ss_pred             CccEEEEecccchhhhhhhhcC-----CCCccEEEecCCCCcccc-cccccCCCcccEEEeccCCCccccCC----CC-c
Q 048826          455 SLKSLSVYGCSKLESIAERLDN-----NTSLEYINISNCENLKIL-PSGLHNLRQLQEITIQRCGNLESFPE----GG-L  523 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~----~~-~  523 (725)
                      .|+.|++++|.+.......+..     .++|+.|++++|...... ......+++|++|++++|.....-..    .+ .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            4777777777665543333322     257777777775432211 11122345667777776543221111    11 1


Q ss_pred             CcCcCceeeeccccCcc----ccccccCCCCCcceeecCCC
Q 048826          524 LCAKLTRLTILDCKRLE----ALPKGLHNLTSLQQLTIGKG  560 (725)
Q Consensus       524 ~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~  560 (725)
                      ..++|++|++++|....    .++..+...++|++|++++|
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N  193 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT  193 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence            23456666666665321    12333345566666666666

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.21  E-value=9.9e-07  Score=90.68  Aligned_cols=84  Identities=17%  Similarity=0.193  Sum_probs=48.6

Q ss_pred             hhcCCCCccEEEecCCCC---------cccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccc
Q 048826          473 RLDNNTSLEYINISNCEN---------LKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALP  543 (725)
Q Consensus       473 ~~~~l~~L~~L~l~~~~~---------~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  543 (725)
                      +...+++|+.|.+.+...         ...++..+..+|+|+.|.+++|... .++. + .+++|+.|++..|.......
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence            344567788887755321         0123333456788888888876332 2332 2 36788888887776433222


Q ss_pred             ccc--CCCCCcceeecCC
Q 048826          544 KGL--HNLTSLQQLTIGK  559 (725)
Q Consensus       544 ~~~--~~l~~L~~L~l~~  559 (725)
                      ..+  ..+|+|++|+|+.
T Consensus       211 ~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             HHHHHSBCTTCCEEEEEC
T ss_pred             HHHHHccCCCCcEEEEec
Confidence            222  3678888888753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.19  E-value=1.5e-06  Score=89.39  Aligned_cols=59  Identities=22%  Similarity=0.200  Sum_probs=27.5

Q ss_pred             hhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCC--cCcCcCceeeec
Q 048826          473 RLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGG--LLCAKLTRLTIL  534 (725)
Q Consensus       473 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~  534 (725)
                      .+..+|+|+.|.+++|... .++. + .+++|++|++..|.........+  ..+|+|+.|+++
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            3445566666666554222 2222 2 25666666666543221111111  145566666664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.14  E-value=4.7e-06  Score=85.92  Aligned_cols=82  Identities=16%  Similarity=0.116  Sum_probs=40.9

Q ss_pred             CccEEEEec-ccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          455 SLKSLSVYG-CSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       455 ~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      +|+.|+|++ |.+....+..|+.+++|+.|++++|......|..+.++++|+.|+|++|. +..+|.......+|+.|++
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCceEEEe
Confidence            466666654 54444444555566666666666543222223344556666666666533 3334333222223556666


Q ss_pred             cccc
Q 048826          534 LDCK  537 (725)
Q Consensus       534 ~~~~  537 (725)
                      .+|+
T Consensus       111 ~~N~  114 (347)
T 2ifg_A          111 SGNP  114 (347)
T ss_dssp             CSSC
T ss_pred             eCCC
Confidence            5554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.13  E-value=0.00012  Score=76.77  Aligned_cols=104  Identities=17%  Similarity=0.247  Sum_probs=52.2

Q ss_pred             hhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCC-CCcCcCcCceeeeccccCcccc-ccccCC
Q 048826          472 ERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTILDCKRLEAL-PKGLHN  548 (725)
Q Consensus       472 ~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~  548 (725)
                      ..|.++++|+.+.+..  .+..++. .+.++.+|+.+.+..  .++.++. .+..|.+|+.+.+-.+  ++.+ ...|..
T Consensus       282 ~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~  355 (394)
T 4gt6_A          282 GAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSN  355 (394)
T ss_dssp             TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTT
T ss_pred             cccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhC
Confidence            3455666677666643  3444432 355667777777754  2444433 4556677777777443  3333 235677


Q ss_pred             CCCcceeecCCCCCCCCcccCCCcccccceecccc
Q 048826          549 LTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDN  583 (725)
Q Consensus       549 l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n  583 (725)
                      |++|+.+++.++...  ......+..|+.+.+..+
T Consensus       356 C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          356 CTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CTTCCEEEESSCHHH--HHTCBCCCCC--------
T ss_pred             CCCCCEEEECCceee--hhhhhccCCCCEEEeCCC
Confidence            777777777665211  112223456666666544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.11  E-value=0.00025  Score=74.31  Aligned_cols=125  Identities=16%  Similarity=0.275  Sum_probs=75.3

Q ss_pred             hhhhcCCCCccEEEecCCCCcccc-cccccCCCcccEEEeccCCCccccCC-CCcCcCcCceeeeccccCcccc-ccccC
Q 048826          471 AERLDNNTSLEYINISNCENLKIL-PSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTILDCKRLEAL-PKGLH  547 (725)
Q Consensus       471 ~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~  547 (725)
                      ..+|..+.+|+.+.+.+.  ...+ ...+.++++|+.+.+..  .+..++. .+..|.+|+.+++.++  ++.+ ...|.
T Consensus       258 ~~aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~  331 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFA  331 (394)
T ss_dssp             TTTTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT
T ss_pred             cceeeecccccEEecccc--cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhh
Confidence            345777888888888652  2233 34466788899888863  3555554 4667888999888654  4444 34678


Q ss_pred             CCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          548 NLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       548 ~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      .|.+|+.+.+..+  +..+..  ...|++|+.+++.++....       ..+..+.+|+.+.+..
T Consensus       332 ~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~-------~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          332 GCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW-------NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             TCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH-------HTCBCCCCC-------
T ss_pred             CCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh-------hhhhccCCCCEEEeCC
Confidence            8888988888654  333322  2345778888887764332       2345566677666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.10  E-value=6.2e-06  Score=85.04  Aligned_cols=102  Identities=24%  Similarity=0.287  Sum_probs=74.9

Q ss_pred             cEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826          457 KSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD  535 (725)
Q Consensus       457 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  535 (725)
                      ..++.++++.+..+|. +..+++|+.|++++++.+..++ ..+.++++|+.|+|++|......|..+..+++|+.|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3467777634556777 8888899999998645566665 5688899999999999765555555678889999999999


Q ss_pred             ccCccccccc-cCCCCCcceeecCCCC
Q 048826          536 CKRLEALPKG-LHNLTSLQQLTIGKGG  561 (725)
Q Consensus       536 ~~~~~~~~~~-~~~l~~L~~L~l~~~~  561 (725)
                      |... .+|.. +..++ |+.|++.+|.
T Consensus        90 N~l~-~~~~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           90 NALE-SLSWKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             SCCS-CCCSTTTCSCC-CCEEECCSSC
T ss_pred             Cccc-eeCHHHcccCC-ceEEEeeCCC
Confidence            8744 55544 44444 9999998884

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.07  E-value=1.5e-06  Score=78.10  Aligned_cols=91  Identities=8%  Similarity=0.029  Sum_probs=60.2

Q ss_pred             CCccEEEEecCCCCCc--CCCCCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCC
Q 048826           55 SNLVILKFEDCGMCTT--WPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQG  132 (725)
Q Consensus        55 ~~L~~L~l~~c~~l~~--l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  132 (725)
                      .+|++|++++|. +++  +..+..+++|++|+|++|..+++-+....+.. ....++|++|++++|+++++-.    ...
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-~~~~~~L~~L~Ls~C~~ITD~G----l~~  134 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-ENLQKSMLEMEIISCGNVTDKG----IIA  134 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-HHHHHHCCEEEEESCTTCCHHH----HHH
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-ccccCCCCEEEcCCCCcCCHHH----HHH
Confidence            468888888884 654  33477888888888888877766543332210 0002468888888888777643    233


Q ss_pred             CCCCCCccEEEeccCcCcc
Q 048826          133 VEGFPKLRELHVIRCSKLQ  151 (725)
Q Consensus       133 ~~~l~~L~~L~l~~c~~l~  151 (725)
                      +..+++|++|++++|+.++
T Consensus       135 L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             GGGCTTCCEEEEESCTTCC
T ss_pred             HhcCCCCCEEECCCCCCCC
Confidence            4567888888888887765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.02  E-value=2.2e-06  Score=88.86  Aligned_cols=87  Identities=10%  Similarity=-0.016  Sum_probs=45.0

Q ss_pred             cCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc----ccccccCCCCCCcEEEeecCCCccccC
Q 048826          255 ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV----KLPQSSLSLSSLREIEIYKCSSLVSFP  330 (725)
Q Consensus       255 ~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~  330 (725)
                      .++|++|++++| .++......+...+...    ++|++|+|++|.+..    .++..+...++|++|+|++|. ++..+
T Consensus       154 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~----~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g  227 (372)
T 3un9_A          154 QCQITTLRLSNN-PLTAAGVAVLMEGLAGN----TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTA  227 (372)
T ss_dssp             TCCCCEEECCSS-CCHHHHHHHHHHHHHTC----SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHH
T ss_pred             CCccceeeCCCC-CCChHHHHHHHHHHhcC----CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHH
Confidence            456666666665 34433222222222222    566777776666532    234445556667777777664 22211


Q ss_pred             C------CCCCCCCceEEeeccC
Q 048826          331 E------VALPSKLKKIQFRECD  347 (725)
Q Consensus       331 ~------~~~l~~L~~L~l~~~~  347 (725)
                      .      ....++|++|++++|.
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHHHHhCCCCCEEeccCCC
Confidence            0      1124567777777665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.94  E-value=8.8e-06  Score=73.13  Aligned_cols=89  Identities=8%  Similarity=0.155  Sum_probs=48.2

Q ss_pred             ccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhc---cCCccEEEEecccCccc-
Q 048826          229 KLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCEL---SCRLEYLRLRYCKGLVK-  304 (725)
Q Consensus       229 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~---~~~L~~L~L~~~~~~~~-  304 (725)
                      .|+.|.+.++. ..+   .....+..+++|++|+|++|..+++       .++..++..   +++|++|+|++|..++. 
T Consensus        62 ~L~~LDLs~~~-Itd---~GL~~L~~~~~L~~L~L~~C~~ItD-------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           62 KIQAIDATDSC-IMS---IGFDHMEGLQYVEKIRLCKCHYIED-------GCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CEEEEEEESCC-CCG---GGGGGGTTCSCCCEEEEESCTTCCH-------HHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             eEeEEeCcCCC-ccH---HHHHHhcCCCCCCEEEeCCCCccCH-------HHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            46666666665 222   2222335677777777777776665       233333321   24567777777654331 


Q ss_pred             cccccCCCCCCcEEEeecCCCccc
Q 048826          305 LPQSSLSLSSLREIEIYKCSSLVS  328 (725)
Q Consensus       305 ~~~~~~~l~~L~~L~L~~~~~~~~  328 (725)
                      =-..+..+++|++|++++|+.+++
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHHhcCCCCCEEECCCCCCCCc
Confidence            112344566666666666665544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.55  E-value=0.0095  Score=61.72  Aligned_cols=14  Identities=7%  Similarity=0.142  Sum_probs=7.4

Q ss_pred             hccCCCcccEEEec
Q 048826          175 SITCLPALCKLKIY  188 (725)
Q Consensus       175 ~~~~~~~L~~L~l~  188 (725)
                      .+..+.+|+.+.+.
T Consensus        64 aF~~C~~L~~I~lp   77 (379)
T 4h09_A           64 NFNSCYNMTKVTVA   77 (379)
T ss_dssp             TTTTCTTCCEEEEC
T ss_pred             HhhCCCCCCEEEeC
Confidence            34555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.48  E-value=0.017  Score=59.86  Aligned_cols=16  Identities=13%  Similarity=0.260  Sum_probs=9.6

Q ss_pred             ccccccCCCcEEEeec
Q 048826          595 RGFHRFSSLRRLTIIN  610 (725)
Q Consensus       595 ~~~~~l~~L~~L~l~~  610 (725)
                      ..|..+++|+++.+..
T Consensus       327 ~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          327 YAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTTTCTTCCCCCCCT
T ss_pred             HHhhCCCCCCEEEECC
Confidence            4566666666666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.12  E-value=0.00017  Score=66.46  Aligned_cols=60  Identities=22%  Similarity=0.027  Sum_probs=30.9

Q ss_pred             CcCceeeeccccCcc----ccccccCCCCCcceeec--CCCCCCCCcc------cCCCcccccceecccchhh
Q 048826          526 AKLTRLTILDCKRLE----ALPKGLHNLTSLQQLTI--GKGGELPSLE------EDGLPTNLHSLWIEDNMEI  586 (725)
Q Consensus       526 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l--~~~~~l~~~~------~~~~~~~L~~L~l~~n~~~  586 (725)
                      ++|++|++++|....    .+...+...++|++|++  ++|. +....      .....++|++|++++|...
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            456666666655322    13334555666777777  5552 22110      0111256777777777543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.10  E-value=0.00012  Score=71.20  Aligned_cols=80  Identities=16%  Similarity=0.066  Sum_probs=52.6

Q ss_pred             cCCCCccEEEecCCCCcc--cccccccCCCcccEEEeccCCCccccCCCCcCcC--cCceeeeccccCcccccc------
Q 048826          475 DNNTSLEYINISNCENLK--ILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCA--KLTRLTILDCKRLEALPK------  544 (725)
Q Consensus       475 ~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~------  544 (725)
                      ..+++|+.|++++|....  .+|..+..+++|+.|+|++|.. ..+. .+..+.  +|++|++++|+....+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            467889999998865433  3445556788899999988653 3321 122222  788888888886654442      


Q ss_pred             -ccCCCCCcceee
Q 048826          545 -GLHNLTSLQQLT  556 (725)
Q Consensus       545 -~~~~l~~L~~L~  556 (725)
                       .+..+|+|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             346677777775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.09  E-value=0.00027  Score=65.10  Aligned_cols=117  Identities=5%  Similarity=0.040  Sum_probs=62.8

Q ss_pred             hhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc----ccccccCCCCCCcEEEeecCC
Q 048826          249 NELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV----KLPQSSLSLSSLREIEIYKCS  324 (725)
Q Consensus       249 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~  324 (725)
                      ...+...+.|++|++++|..+..-........+..-    ++|++|+|++|.+..    .+...+...++|++|+|++|.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~----~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN----TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC----CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC----CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            344566778888888876455543222222222222    678888888877643    234445556778888888775


Q ss_pred             CccccC------CCCCCCCCceEEe--eccCcccc----cccccccCCCCcccEEEeecc
Q 048826          325 SLVSFP------EVALPSKLKKIQF--RECDALKL----LPEAWMSDTNSSLEILSIWVC  372 (725)
Q Consensus       325 ~~~~~~------~~~~l~~L~~L~l--~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~  372 (725)
                       ++.-+      .....++|++|++  ++|..-..    +....  ..+++|++|++++|
T Consensus       105 -i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L--~~n~~L~~L~L~~n  161 (185)
T 1io0_A          105 -ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML--EKNTTLLKFGYHFT  161 (185)
T ss_dssp             -CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH--HHCSSCCEEECCCS
T ss_pred             -CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH--HhCCCcCEEeccCC
Confidence             33211      2223456777777  55542221    11111  12355666666655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.82  E-value=0.00073  Score=65.55  Aligned_cols=14  Identities=36%  Similarity=0.209  Sum_probs=9.5

Q ss_pred             cccccCCCcEEEee
Q 048826          596 GFHRFSSLRRLTII  609 (725)
Q Consensus       596 ~~~~l~~L~~L~l~  609 (725)
                      .+..+++|+.|+=.
T Consensus       246 il~~~P~L~~LDg~  259 (267)
T 3rw6_A          246 IRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHCTTCCEESSC
T ss_pred             HHHHCcccCeECCc
Confidence            45677888877643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.85  E-value=0.1  Score=44.29  Aligned_cols=51  Identities=20%  Similarity=0.194  Sum_probs=37.2

Q ss_pred             eEEEeccCCC--CCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcc
Q 048826           34 QFCISGYGGT--KFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMS   89 (725)
Q Consensus        34 ~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~   89 (725)
                      .++.++.+..  .+|..+    -.+|+.|+|++| .++.+|.  +..+++|+.|+|++|+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l----p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF----PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC----CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCC----CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence            4566666666  667544    247888888887 7888876  6778888888888775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=89.75  E-value=0.24  Score=45.16  Aligned_cols=93  Identities=14%  Similarity=0.063  Sum_probs=53.3

Q ss_pred             hhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc----ccccccCCCCCCcEEEeecCC
Q 048826          249 NELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV----KLPQSSLSLSSLREIEIYKCS  324 (725)
Q Consensus       249 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~  324 (725)
                      ...+..-+.|++|+|+++..+..-......+.+..-    ..|+.|+|++|.+..    .+.+.+..-+.|++|+|++|.
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N----~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS----KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC----SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC----CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            334455678888888875455543333223333322    688888888887753    233344455778888888775


Q ss_pred             CccccC------CCCCCCCCceEEeecc
Q 048826          325 SLVSFP------EVALPSKLKKIQFREC  346 (725)
Q Consensus       325 ~~~~~~------~~~~l~~L~~L~l~~~  346 (725)
                       ++.-+      ....-+.|++|+++++
T Consensus       110 -Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          110 -LTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             -CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             -CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence             33322      1122345666666644

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=88.88  E-value=0.26  Score=41.65  Aligned_cols=37  Identities=16%  Similarity=-0.024  Sum_probs=24.3

Q ss_pred             cCCccEEEEecccCccccccccCCCCCCcEEEeecCC
Q 048826          288 SCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCS  324 (725)
Q Consensus       288 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~  324 (725)
                      |++|++|+|++|.+...-+..|..+++|+.|+|.+|+
T Consensus        30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            3577777777777644334456667777777777765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.67  E-value=1.1  Score=40.73  Aligned_cols=91  Identities=18%  Similarity=0.123  Sum_probs=61.3

Q ss_pred             CCccceeeeccccchhH--HhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc-
Q 048826          227 LPKLEELEINDMKEQTY--IWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV-  303 (725)
Q Consensus       227 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-  303 (725)
                      -+.|+.|.+.+......  ...+ ...+..-..|+.|+|++| .+.+-....+++.+..-    ..|++|+|++|.+.. 
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N----~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANT-AISDSEARGLIELIETS----PSLRVLNVESNFLTPE  113 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHC----SSCCEEECCSSBCCHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcC----CccCeEecCCCcCCHH
Confidence            46678888775422222  1112 233466689999999996 56665554444545444    899999999999854 


Q ss_pred             ---ccccccCCCCCCcEEEeecC
Q 048826          304 ---KLPQSSLSLSSLREIEIYKC  323 (725)
Q Consensus       304 ---~~~~~~~~l~~L~~L~L~~~  323 (725)
                         .+.+.+..-+.|++|+|+++
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHhhCCceeEEECCCC
Confidence               35556666778999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	725
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.77
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.73
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.68
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.6
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.6
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.57
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.56
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.54
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.45
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.39
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.3
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.29
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.27
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.27
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.26
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.24
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.18
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.1
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.06
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.0
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.93
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.92
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.8
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.77
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.55
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.41
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.47
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.93
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.73

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=1.5e-17  Score=173.40  Aligned_cols=81  Identities=14%  Similarity=0.162  Sum_probs=55.7

Q ss_pred             hhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCC
Q 048826          253 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEV  332 (725)
Q Consensus       253 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~  332 (725)
                      ..+.+|++|+++++ .++.+.      ++..+    ++|++|++++|.+. .+++ ++++++|++|++++|. +..+++.
T Consensus        41 ~~l~~l~~L~l~~~-~I~~l~------gl~~L----~nL~~L~Ls~N~l~-~l~~-l~~L~~L~~L~L~~n~-i~~i~~l  106 (384)
T d2omza2          41 TDLDQVTTLQADRL-GIKSID------GVEYL----NNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQ-IADITPL  106 (384)
T ss_dssp             HHHTTCCEEECCSS-CCCCCT------TGGGC----TTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSC-CCCCGGG
T ss_pred             HHhCCCCEEECCCC-CCCCcc------ccccC----CCCCEEeCcCCcCC-CCcc-ccCCcccccccccccc-ccccccc
Confidence            34567888888875 455542      13344    78888888888763 4443 7788888888888875 4555666


Q ss_pred             CCCCCCceEEeeccC
Q 048826          333 ALPSKLKKIQFRECD  347 (725)
Q Consensus       333 ~~l~~L~~L~l~~~~  347 (725)
                      +.+++|+.|+++++.
T Consensus       107 ~~l~~L~~L~~~~~~  121 (384)
T d2omza2         107 ANLTNLTGLTLFNNQ  121 (384)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             ccccccccccccccc
Confidence            677888888877665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.8e-17  Score=172.92  Aligned_cols=338  Identities=18%  Similarity=0.205  Sum_probs=191.5

Q ss_pred             CCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEE
Q 048826          289 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILS  368 (725)
Q Consensus       289 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  368 (725)
                      .+|++|+++++.+. .+ ++++.+++|++|++++|. ++.+++++.+++|++|++++|. +..++..   ..+++|+.|+
T Consensus        44 ~~l~~L~l~~~~I~-~l-~gl~~L~nL~~L~Ls~N~-l~~l~~l~~L~~L~~L~L~~n~-i~~i~~l---~~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQ-IADITPL---ANLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSSCCC-CC-TTGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGG---TTCTTCCEEE
T ss_pred             CCCCEEECCCCCCC-Cc-cccccCCCCCEEeCcCCc-CCCCccccCCcccccccccccc-ccccccc---cccccccccc
Confidence            78999999999874 34 578899999999999985 7788878889999999999997 4444432   4568899999


Q ss_pred             eeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEee-CCCccccccCCCcccccccc
Q 048826          369 IWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIES-CPSLTRIFSKNELPATLESL  447 (725)
Q Consensus       369 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~l~~l~~~~~l~~~~~~~  447 (725)
                      +.++. ...+........+......... +.........          ...+...... ...+.. +.     .     
T Consensus       117 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~-----~-----  173 (384)
T d2omza2         117 LFNNQ-ITDIDPLKNLTNLNRLELSSNT-ISDISALSGL----------TSLQQLSFGNQVTDLKP-LA-----N-----  173 (384)
T ss_dssp             CCSSC-CCCCGGGTTCTTCSEEEEEEEE-ECCCGGGTTC----------TTCSEEEEEESCCCCGG-GT-----T-----
T ss_pred             ccccc-cccccccccccccccccccccc-cccccccccc----------ccccccccccccchhhh-hc-----c-----
Confidence            98764 3333333333344433333211 1100000000          0011111110 011111 00     0     


Q ss_pred             ccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCc
Q 048826          448 EVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAK  527 (725)
Q Consensus       448 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  527 (725)
                          . +.........+..  ........+++++.+++++|. +..++. ...+++|++|++++|. ++.++ .+..+++
T Consensus       174 ----~-~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~l~~n~-i~~~~~-~~~~~~L~~L~l~~n~-l~~~~-~l~~l~~  242 (384)
T d2omza2         174 ----L-TTLERLDISSNKV--SDISVLAKLTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGNQ-LKDIG-TLASLTN  242 (384)
T ss_dssp             ----C-TTCCEEECCSSCC--CCCGGGGGCTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCG-GGGGCTT
T ss_pred             ----c-ccccccccccccc--ccccccccccccceeeccCCc-cCCCCc-ccccCCCCEEECCCCC-CCCcc-hhhcccc
Confidence                0 1122222222221  122344566677777777643 333322 3456677777777753 33443 3455667


Q ss_pred             CceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEE
Q 048826          528 LTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLT  607 (725)
Q Consensus       528 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~  607 (725)
                      |+.+++++|... .++ .+..+++|++|+++++. +..++....++.++.+++.+|....  +    ..+..+++++.|+
T Consensus       243 L~~L~l~~n~l~-~~~-~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~l~~~~n~l~~--~----~~~~~~~~l~~L~  313 (384)
T d2omza2         243 LTDLDLANNQIS-NLA-PLSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQLED--I----SPISNLKNLTYLT  313 (384)
T ss_dssp             CSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCSC--C----GGGGGCTTCSEEE
T ss_pred             cchhccccCccC-CCC-cccccccCCEeeccCcc-cCCCCcccccccccccccccccccc--c----cccchhcccCeEE
Confidence            777777777633 332 25667777777777663 3333344445667777777664321  1    2355667777777


Q ss_pred             eecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEE
Q 048826          608 IINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQL  687 (725)
Q Consensus       608 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L  687 (725)
                      ++++  .+..++. +         ..+++|++|++++| .++.++ .+..+++|++|++++| +++.+++..-+++|+.|
T Consensus       314 ls~n--~l~~l~~-l---------~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L  378 (384)
T d2omza2         314 LYFN--NISDISP-V---------SSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQL  378 (384)
T ss_dssp             CCSS--CCSCCGG-G---------GGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEE
T ss_pred             CCCC--CCCCCcc-c---------ccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEe
Confidence            7763  2222321 1         25677788888775 566665 3667778888888764 56666554445677777


Q ss_pred             EecC
Q 048826          688 HIYR  691 (725)
Q Consensus       688 ~l~~  691 (725)
                      ++++
T Consensus       379 ~L~~  382 (384)
T d2omza2         379 GLND  382 (384)
T ss_dssp             ECCC
T ss_pred             eCCC
Confidence            7765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.73  E-value=1.9e-17  Score=167.20  Aligned_cols=82  Identities=15%  Similarity=0.106  Sum_probs=48.7

Q ss_pred             CCccEEEEec-ccCccccccccCCCCCCcEEEeecCCCccccCC-CCCCCCCceEEeeccCcccccccccccCCCCcccE
Q 048826          289 CRLEYLRLRY-CKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEI  366 (725)
Q Consensus       289 ~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  366 (725)
                      ++|++|+|++ |.+.+.+|..++++++|++|+|++|......+. ...+.+|+.+++++|.....+|..+.  .++.++.
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~--~l~~L~~  153 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS--SLPNLVG  153 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--GCTTCCE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc--cCcccce
Confidence            6777777765 455556777777777777777777653332221 33366677777766665555554432  2355666


Q ss_pred             EEeecc
Q 048826          367 LSIWVC  372 (725)
Q Consensus       367 L~l~~~  372 (725)
                      ++++++
T Consensus       154 l~l~~n  159 (313)
T d1ogqa_         154 ITFDGN  159 (313)
T ss_dssp             EECCSS
T ss_pred             eecccc
Confidence            665555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=1e-15  Score=153.79  Aligned_cols=125  Identities=14%  Similarity=0.145  Sum_probs=69.6

Q ss_pred             CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      +|+.+++++|.... ++.  ..+++|+.|++++|......+..+.+++.++.|++++|......+..+..+++|++|+++
T Consensus       151 ~L~~l~l~~n~l~~-l~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~  227 (305)
T d1xkua_         151 KLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN  227 (305)
T ss_dssp             TCCEEECCSSCCCS-CCS--SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred             ccCccccccCCccc-cCc--ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecc
Confidence            35556665554332 221  124566666666655555555556666666666666654444334455556667777776


Q ss_pred             cccCccccccccCCCCCcceeecCCCCCCCCccc--------CCCcccccceecccch
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--------DGLPTNLHSLWIEDNM  584 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--------~~~~~~L~~L~l~~n~  584 (725)
                      +|. ++.+|.++..+++|++|++++| .++.++.        ....++|+.|++++|+
T Consensus       228 ~N~-L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         228 NNK-LVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SSC-CSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccc-ccccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            664 4456666666777777777766 2333321        1123556666666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.67  E-value=3.9e-17  Score=164.89  Aligned_cols=228  Identities=16%  Similarity=0.118  Sum_probs=157.8

Q ss_pred             CCccEEEEec-ccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          454 PSLKSLSVYG-CSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      ++|++|+|++ |.+.+.+|..++.+++|++|++++|......+..+..++.|+.+++++|.....+|..+..+++|+.++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            4688888886 556667888888888888888888666655566677788888888888877777888888888888888


Q ss_pred             eccccCccccccccCCCCCc-ceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826          533 ILDCKRLEALPKGLHNLTSL-QQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC  611 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~  611 (725)
                      +++|.....+|..+..+..+ +.+++++|......+....-.....+++.++.... .   .+..+..+++|+.+++.++
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~-~---~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG-D---ASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEE-C---CGGGCCTTSCCSEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c---ccccccccccccccccccc
Confidence            88888777778777777665 77777776322211111111234456666664321 1   1234667788888888874


Q ss_pred             CCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEecC
Q 048826          612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYR  691 (725)
Q Consensus       612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~  691 (725)
                       .....++ .+         ..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+.+++|+.+++.+
T Consensus       232 -~l~~~~~-~~---------~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         232 -SLAFDLG-KV---------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN  300 (313)
T ss_dssp             -EECCBGG-GC---------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred             -ccccccc-cc---------ccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCC
Confidence             2222222 22         256889999999865545888888888999999999864333677666677888888887


Q ss_pred             CchhH
Q 048826          692 CPLIE  696 (725)
Q Consensus       692 c~~l~  696 (725)
                      ++.+.
T Consensus       301 N~~l~  305 (313)
T d1ogqa_         301 NKCLC  305 (313)
T ss_dssp             SSEEE
T ss_pred             Ccccc
Confidence            77553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.60  E-value=1.5e-13  Score=140.65  Aligned_cols=315  Identities=27%  Similarity=0.280  Sum_probs=169.5

Q ss_pred             CCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCC
Q 048826          256 CSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP  335 (725)
Q Consensus       256 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l  335 (725)
                      .++++|+++++ .++.+|..            +++|++|++++|.+ +.+|..   +.+|+.|++.+|. ++.++.  .+
T Consensus        38 ~~l~~LdLs~~-~L~~lp~~------------~~~L~~L~Ls~N~l-~~lp~~---~~~L~~L~l~~n~-l~~l~~--lp   97 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSLPEL------------PPHLESLVASCNSL-TELPEL---PQSLKSLLVDNNN-LKALSD--LP   97 (353)
T ss_dssp             HTCSEEECTTS-CCSCCCSC------------CTTCSEEECCSSCC-SSCCCC---CTTCCEEECCSSC-CSCCCS--CC
T ss_pred             cCCCEEEeCCC-CCCCCCCC------------CCCCCEEECCCCCC-cccccc---hhhhhhhhhhhcc-cchhhh--hc
Confidence            47888888884 56666532            26888888887766 466654   3577888888764 444432  34


Q ss_pred             CCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCccc
Q 048826          336 SKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRY  415 (725)
Q Consensus       336 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  415 (725)
                      ++|++|++++|. +..++..   ..++.|+.|++.++... ..+  .....                             
T Consensus        98 ~~L~~L~L~~n~-l~~lp~~---~~l~~L~~L~l~~~~~~-~~~--~~~~~-----------------------------  141 (353)
T d1jl5a_          98 PLLEYLGVSNNQ-LEKLPEL---QNSSFLKIIDVDNNSLK-KLP--DLPPS-----------------------------  141 (353)
T ss_dssp             TTCCEEECCSSC-CSSCCCC---TTCTTCCEEECCSSCCS-CCC--CCCTT-----------------------------
T ss_pred             cccccccccccc-cccccch---hhhccceeecccccccc-ccc--ccccc-----------------------------
Confidence            567778877775 4555533   23466777776655321 111  11122                             


Q ss_pred             ccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc
Q 048826          416 TSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP  495 (725)
Q Consensus       416 ~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~  495 (725)
                          +..+.+..+..... .....+             +.++.++++++......    ......+.+...+ .....++
T Consensus       142 ----l~~l~~~~~~~~~~-~~l~~l-------------~~l~~L~l~~n~~~~~~----~~~~~~~~l~~~~-~~~~~~~  198 (353)
T d1jl5a_         142 ----LEFIAAGNNQLEEL-PELQNL-------------PFLTAIYADNNSLKKLP----DLPLSLESIVAGN-NILEELP  198 (353)
T ss_dssp             ----CCEEECCSSCCSSC-CCCTTC-------------TTCCEEECCSSCCSSCC----CCCTTCCEEECCS-SCCSSCC
T ss_pred             ----ccchhhcccccccc-cccccc-------------ccceecccccccccccc----ccccccccccccc-ccccccc
Confidence                23333222111100 000000             23666666665433211    1112233444443 3344443


Q ss_pred             ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccc
Q 048826          496 SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNL  575 (725)
Q Consensus       496 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L  575 (725)
                      . ...++.|+.+++++|.. ..++.   ..+++..+++.++... ..+.   ..+.+...++..+.. ..+  .......
T Consensus       199 ~-~~~l~~L~~l~l~~n~~-~~~~~---~~~~l~~~~~~~~~~~-~~~~---~~~~l~~~~~~~~~~-~~l--~~l~~~~  266 (353)
T d1jl5a_         199 E-LQNLPFLTTIYADNNLL-KTLPD---LPPSLEALNVRDNYLT-DLPE---LPQSLTFLDVSENIF-SGL--SELPPNL  266 (353)
T ss_dssp             C-CTTCTTCCEEECCSSCC-SSCCS---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC-SEE--SCCCTTC
T ss_pred             c-ccccccccccccccccc-ccccc---cccccccccccccccc-cccc---ccccccccccccccc-ccc--ccccchh
Confidence            2 45677777777777532 33332   2335666666665532 2221   223444444444321 111  1111233


Q ss_pred             cceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccc
Q 048826          576 HSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSI  655 (725)
Q Consensus       576 ~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~  655 (725)
                      ...++..+...        .....+++|++|++++|  .+..+|.            .+++|+.|++++| .++.+|.  
T Consensus       267 ~~~~~~~~~~~--------~~~~~~~~L~~L~Ls~N--~l~~lp~------------~~~~L~~L~L~~N-~L~~l~~--  321 (353)
T d1jl5a_         267 YYLNASSNEIR--------SLCDLPPSLEELNVSNN--KLIELPA------------LPPRLERLIASFN-HLAEVPE--  321 (353)
T ss_dssp             CEEECCSSCCS--------EECCCCTTCCEEECCSS--CCSCCCC------------CCTTCCEEECCSS-CCSCCCC--
T ss_pred             cccccccCccc--------cccccCCCCCEEECCCC--ccCcccc------------ccCCCCEEECCCC-cCCcccc--
Confidence            33444444221        12334678899999884  4556664            3478999999885 5788874  


Q ss_pred             cCCcCCCeEeccCCCCCcccCCCCCcccccEEEec
Q 048826          656 VDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIY  690 (725)
Q Consensus       656 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~  690 (725)
                       .+++|++|++++|+ ++.+|.  .+.+|++|.+.
T Consensus       322 -~~~~L~~L~L~~N~-L~~lp~--~~~~L~~L~~~  352 (353)
T d1jl5a_         322 -LPQNLKQLHVEYNP-LREFPD--IPESVEDLRMN  352 (353)
T ss_dssp             -CCTTCCEEECCSSC-CSSCCC--CCTTCCEEECC
T ss_pred             -ccCCCCEEECcCCc-CCCCCc--cccccCeeECc
Confidence             46789999999975 888876  57788888775

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.60  E-value=2e-14  Score=147.44  Aligned_cols=164  Identities=21%  Similarity=0.244  Sum_probs=116.5

Q ss_pred             cccCCCCCCCccccchhhhhcccCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccce
Q 048826            3 QWTRSADGSSSREAETEKGVLDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKH   82 (725)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~   82 (725)
                      +|.+.++....+++.....-++.. ...++++|+|++++...+|.+     .++|++|++++| .++++|..  +.+|+.
T Consensus        12 ~w~~~~~~~~~~~~~~~~~~l~~c-~~~~l~~LdLs~~~L~~lp~~-----~~~L~~L~Ls~N-~l~~lp~~--~~~L~~   82 (353)
T d1jl5a_          12 EWERNAPPGNGEQREMAVSRLRDC-LDRQAHELELNNLGLSSLPEL-----PPHLESLVASCN-SLTELPEL--PQSLKS   82 (353)
T ss_dssp             HHHHTSCTTSCCCHHHHHHHHHHH-HHHTCSEEECTTSCCSCCCSC-----CTTCSEEECCSS-CCSSCCCC--CTTCCE
T ss_pred             HHHhhCCCCcchhHHHHHHHHHHH-HHcCCCEEEeCCCCCCCCCCC-----CCCCCEEECCCC-CCcccccc--hhhhhh
Confidence            466655544444333222212211 126899999999999999853     468999999987 89999873  568999


Q ss_pred             eeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcce
Q 048826           83 LAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALE  162 (725)
Q Consensus        83 L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~  162 (725)
                      |++++|. ++.++.-         .+.|++|+++++ .+...      +.+..+++|++|+++++ .+. ..+...+.+.
T Consensus        83 L~l~~n~-l~~l~~l---------p~~L~~L~L~~n-~l~~l------p~~~~l~~L~~L~l~~~-~~~-~~~~~~~~l~  143 (353)
T d1jl5a_          83 LLVDNNN-LKALSDL---------PPLLEYLGVSNN-QLEKL------PELQNSSFLKIIDVDNN-SLK-KLPDLPPSLE  143 (353)
T ss_dssp             EECCSSC-CSCCCSC---------CTTCCEEECCSS-CCSSC------CCCTTCTTCCEEECCSS-CCS-CCCCCCTTCC
T ss_pred             hhhhhcc-cchhhhh---------cccccccccccc-ccccc------cchhhhccceeeccccc-ccc-cccccccccc
Confidence            9999886 6666531         457999999985 45543      34577899999999988 444 6666677888


Q ss_pred             eeeeccChhh-hhhccCCCcccEEEecCCCcee
Q 048826          163 MLAIEKCEEL-LASITCLPALCKLKIYGCKKVV  194 (725)
Q Consensus       163 ~L~l~~~~~l-~~~~~~~~~L~~L~l~~~~~~~  194 (725)
                      .+.+..+... ...+..++.++.+.+.++....
T Consensus       144 ~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             chhhccccccccccccccccceecccccccccc
Confidence            8888776544 3457778889999998876544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=2.6e-14  Score=143.26  Aligned_cols=246  Identities=16%  Similarity=0.157  Sum_probs=155.5

Q ss_pred             CCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCC
Q 048826          256 CSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP  335 (725)
Q Consensus       256 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l  335 (725)
                      +++++|+++++ .++.+++..    +..+    ++|++|++++|.+....|..|.++++|++|++++|. ++.++. ...
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~----f~~l----~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~-~~~   99 (305)
T d1xkua_          31 PDTALLDLQNN-KITEIKDGD----FKNL----KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPE-KMP   99 (305)
T ss_dssp             TTCCEEECCSS-CCCCBCTTT----TTTC----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCS-SCC
T ss_pred             CCCCEEECcCC-cCCCcChhH----hhcc----ccccccccccccccccchhhhhCCCccCEecccCCc-cCcCcc-chh
Confidence            46777777774 566666532    3344    677777777777765556667777777777777764 455543 234


Q ss_pred             CCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCccc
Q 048826          336 SKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRY  415 (725)
Q Consensus       336 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  415 (725)
                      ..++.|.+.++. +..++.... .....+..+....+...........                              ..
T Consensus       100 ~~l~~L~~~~n~-l~~l~~~~~-~~~~~~~~l~~~~n~~~~~~~~~~~------------------------------~~  147 (305)
T d1xkua_         100 KTLQELRVHENE-ITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGA------------------------------FQ  147 (305)
T ss_dssp             TTCCEEECCSSC-CCBBCHHHH-TTCTTCCEEECCSSCCCGGGBCTTG------------------------------GG
T ss_pred             hhhhhhhccccc-hhhhhhhhh-hccccccccccccccccccCCCccc------------------------------cc
Confidence            567777766654 222222211 1123344444433321111000000                              00


Q ss_pred             ccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc
Q 048826          416 TSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP  495 (725)
Q Consensus       416 ~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~  495 (725)
                      ..++|+++++.++ .+.. ++..             ++++|++|++++|......+..+..++.+++|++++|......+
T Consensus       148 ~l~~L~~l~l~~n-~l~~-l~~~-------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~  212 (305)
T d1xkua_         148 GMKKLSYIRIADT-NITT-IPQG-------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN  212 (305)
T ss_dssp             GCTTCCEEECCSS-CCCS-CCSS-------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccCccccccC-Cccc-cCcc-------------cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccc
Confidence            1123666666553 2222 2211             12469999999998888888889999999999999865544446


Q ss_pred             ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcccccc-------ccCCCCCcceeecCCCC
Q 048826          496 SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPK-------GLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       496 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------~~~~l~~L~~L~l~~~~  561 (725)
                      ..+.++++|++|++++| .+..+|..+..+++|++|++++|. ++.++.       .....++|+.|++++|+
T Consensus       213 ~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         213 GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccccccceeeecccc-cccccccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence            67788999999999997 567888888889999999999987 445432       23467889999999985

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-14  Score=141.33  Aligned_cols=80  Identities=13%  Similarity=0.120  Sum_probs=55.9

Q ss_pred             cCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCC
Q 048826          255 ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVAL  334 (725)
Q Consensus       255 ~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~  334 (725)
                      ...+.+.+.++ ..++.+|..           +|+++++|+|++|.+.+..+..|.++++|++|+|++|. ++.++..+.
T Consensus         9 ~~~~~~v~C~~-~~L~~iP~~-----------lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~~~~   75 (266)
T d1p9ag_           9 VASHLEVNCDK-RNLTALPPD-----------LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGT   75 (266)
T ss_dssp             STTCCEEECTT-SCCSSCCSC-----------CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSC
T ss_pred             cCCCeEEEccC-CCCCeeCcC-----------cCcCCCEEECcCCcCCCcCHHHhhcccccccccccccc-ccccccccc
Confidence            34455556655 456666643           23688999999988755444578888999999998874 666666666


Q ss_pred             CCCCceEEeeccC
Q 048826          335 PSKLKKIQFRECD  347 (725)
Q Consensus       335 l~~L~~L~l~~~~  347 (725)
                      +++|++|++++|.
T Consensus        76 l~~L~~L~Ls~N~   88 (266)
T d1p9ag_          76 LPVLGTLDLSHNQ   88 (266)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             ccccccccccccc
Confidence            7777777777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.4e-15  Score=147.19  Aligned_cols=217  Identities=17%  Similarity=0.204  Sum_probs=135.0

Q ss_pred             EEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCcce
Q 048826           35 FCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLET  112 (725)
Q Consensus        35 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~  112 (725)
                      ++.++.+...+|..+    .+++++|+|++| .++.+|+  +..+++|++|+++++. +..++...+..     .+.++.
T Consensus        16 v~c~~~~L~~iP~~i----p~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~-----~~~~~~   84 (284)
T d1ozna_          16 TSCPQQGLQAVPVGI----PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTG-----LALLEQ   84 (284)
T ss_dssp             EECCSSCCSSCCTTC----CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTT-----CTTCCE
T ss_pred             EEcCCCCCCccCCCC----CCCCCEEECcCC-cCCCCCHHHhhcccccccccccccc-ccccccccccc-----cccccc
Confidence            344555566777654    357899999997 7888886  8899999999999887 77776554332     677788


Q ss_pred             eeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCCCc
Q 048826          113 LRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKK  192 (725)
Q Consensus       113 L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~  192 (725)
                      +.......++...    +..+..+++|++|+++++. +. .++.                 ..+..+++|+.+++.++..
T Consensus        85 l~~~~~~~~~~l~----~~~~~~l~~L~~L~l~~n~-~~-~~~~-----------------~~~~~~~~L~~l~l~~N~l  141 (284)
T d1ozna_          85 LDLSDNAQLRSVD----PATFHGLGRLHTLHLDRCG-LQ-ELGP-----------------GLFRGLAALQYLYLQDNAL  141 (284)
T ss_dssp             EECCSCTTCCCCC----TTTTTTCTTCCEEECTTSC-CC-CCCT-----------------TTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccc----chhhcccccCCEEecCCcc-cc-cccc-----------------cccchhcccchhhhccccc
Confidence            8777766666654    4556888899999988873 32 2221                 2344556666666666643


Q ss_pred             eeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccc
Q 048826          193 VVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSL  272 (725)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  272 (725)
                      ..+                                                    +...+..+++|++|+++++ .++.+
T Consensus       142 ~~i----------------------------------------------------~~~~f~~~~~L~~L~l~~N-~l~~l  168 (284)
T d1ozna_         142 QAL----------------------------------------------------PDDTFRDLGNLTHLFLHGN-RISSV  168 (284)
T ss_dssp             CCC----------------------------------------------------CTTTTTTCTTCCEEECCSS-CCCEE
T ss_pred             ccc----------------------------------------------------ChhHhccccchhhcccccC-ccccc
Confidence            221                                                    1112344556666666663 45555


Q ss_pred             hhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccC--CCCCCCCCceEEeeccC
Q 048826          273 VAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFP--EVALPSKLKKIQFRECD  347 (725)
Q Consensus       273 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~  347 (725)
                      ++..    +..+    ++|+++++++|.+.+..|..|..+++|++|++++|.. ..++  .+..+++|++|++++|+
T Consensus       169 ~~~~----f~~l----~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         169 PERA----FRGL----HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CTTT----TTTC----TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCHHHHTTCTTCCEEECCSSC
T ss_pred             chhh----hccc----cccchhhhhhccccccChhHhhhhhhccccccccccc-ccccccccccccccCEEEecCCC
Confidence            4432    2333    5666666666666555566666666666666666543 3332  13345666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.7e-14  Score=137.37  Aligned_cols=126  Identities=21%  Similarity=0.143  Sum_probs=85.9

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI  533 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  533 (725)
                      +++++|+|++|.+.+..+..|..+++|++|++++| .++.++. +..+++|++|++++|+ +..++..+..+++|+.|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-cccccccccccccccc-ccccccccccccccccccc
Confidence            46888999988777666677888888888888885 4566654 4678888888888854 5556667777788888888


Q ss_pred             ccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccc
Q 048826          534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDN  583 (725)
Q Consensus       534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n  583 (725)
                      ++|......+..+..+.++++|++++|. +..++.  ...+++|+.+++++|
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cccccceeeccccccccccccccccccc-cceeccccccccccchhcccccc
Confidence            8877555455556777778888887773 232221  112344455555444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.1e-14  Score=140.05  Aligned_cols=201  Identities=21%  Similarity=0.215  Sum_probs=137.7

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCcccc-CCCCcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESF-PEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~  532 (725)
                      +++++|+|++|.+.+..+..|..+++|++|+++++......+..+..++.++.+....+..+..+ +..+..+++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            45899999999887666677889999999999886544444555666788888888776777666 44577788999999


Q ss_pred             eccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826          533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN  610 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~  610 (725)
                      +++|......+..+..+++|+.+++++|. ++.++.  ...+++|++|++++|...  .++.  ..+..+++|+.+++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~--~l~~--~~f~~l~~L~~l~l~~  186 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS--SVPE--RAFRGLHSLDRLLLHQ  186 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC--EECT--TTTTTCTTCCEEECCS
T ss_pred             cCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCccc--ccch--hhhccccccchhhhhh
Confidence            99887554455566778889999998883 444432  234577888888887542  1211  4566777788888777


Q ss_pred             CCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc-ccccCCcCCCeEeccCCC
Q 048826          611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS-SSIVDLQNLTSLYLLDCP  670 (725)
Q Consensus       611 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~c~  670 (725)
                      + ......|..+         ..+++|++|++++|. +..++ ..+..+++|+.|++++++
T Consensus       187 N-~l~~i~~~~f---------~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         187 N-RVAHVHPHAF---------RDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             S-CCCEECTTTT---------TTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             c-cccccChhHh---------hhhhhcccccccccc-cccccccccccccccCEEEecCCC
Confidence            3 2223334333         256778888887754 44443 455677778888877754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=5e-14  Score=134.29  Aligned_cols=79  Identities=14%  Similarity=0.216  Sum_probs=53.2

Q ss_pred             CCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCCC
Q 048826           54 FSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGV  133 (725)
Q Consensus        54 ~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  133 (725)
                      +.+|+.|++.+| .+++++.++++++|++|++++|. +..+.+ +      ..+++|+.+++.++ .++.      ...+
T Consensus        40 l~~L~~L~l~~~-~i~~l~~l~~l~~L~~L~ls~n~-i~~~~~-l------~~l~~l~~l~~~~n-~~~~------i~~l  103 (227)
T d1h6ua2          40 LDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQ-ITDLAP-L------KNLTKITELELSGN-PLKN------VSAI  103 (227)
T ss_dssp             HHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-G------TTCCSCCEEECCSC-CCSC------CGGG
T ss_pred             cCCcCEEECCCC-CCCcchhHhcCCCCcEeecCCce-eecccc-c------cccccccccccccc-cccc------cccc
Confidence            677888888887 67777667888888888888776 555432 1      33677777777764 2332      2334


Q ss_pred             CCCCCccEEEeccCc
Q 048826          134 EGFPKLRELHVIRCS  148 (725)
Q Consensus       134 ~~l~~L~~L~l~~c~  148 (725)
                      ..+++|+.+.+++|.
T Consensus       104 ~~l~~L~~l~l~~~~  118 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQ  118 (227)
T ss_dssp             TTCTTCCEEECTTSC
T ss_pred             ccccccccccccccc
Confidence            567777777777763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=1e-12  Score=124.94  Aligned_cols=188  Identities=15%  Similarity=0.187  Sum_probs=118.0

Q ss_pred             CCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCccee
Q 048826          476 NNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQL  555 (725)
Q Consensus       476 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  555 (725)
                      .+.+|+.|++.+| .++.+ ..+..+++|++|++++|... .++ .+..+++|+++++++|.. +.++ .+..+++|+.+
T Consensus        39 ~l~~L~~L~l~~~-~i~~l-~~l~~l~~L~~L~ls~n~i~-~~~-~l~~l~~l~~l~~~~n~~-~~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGT-GVTTI-EGVQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNPL-KNVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSSCCC-CCG-GGTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCEE
T ss_pred             HcCCcCEEECCCC-CCCcc-hhHhcCCCCcEeecCCceee-ccc-cccccccccccccccccc-cccc-ccccccccccc
Confidence            4456777777764 34455 34666777777777775433 232 245666777777777653 3343 45667777777


Q ss_pred             ecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCC
Q 048826          556 TIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPA  635 (725)
Q Consensus       556 ~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  635 (725)
                      +++++... .+......+.++.+.+.++....      ...+..+++|++|++.+|.  ....+.          +..++
T Consensus       113 ~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~L~~L~l~~n~--~~~~~~----------l~~l~  173 (227)
T d1h6ua2         113 DLTSTQIT-DVTPLAGLSNLQVLYLDLNQITN------ISPLAGLTNLQYLSIGNAQ--VSDLTP----------LANLS  173 (227)
T ss_dssp             ECTTSCCC-CCGGGTTCTTCCEEECCSSCCCC------CGGGGGCTTCCEEECCSSC--CCCCGG----------GTTCT
T ss_pred             cccccccc-ccchhccccchhhhhchhhhhch------hhhhccccccccccccccc--cccchh----------hcccc
Confidence            77776432 22333344677777776664321      0235567788888887742  211111          22567


Q ss_pred             CCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEecC
Q 048826          636 SLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYR  691 (725)
Q Consensus       636 ~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~  691 (725)
                      +|++|++++| .++.++. +..+++|+.|++++| +++.+++.+-+++|+.|++++
T Consensus       174 ~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         174 KLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             cceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence            8888888885 5777764 677888888888886 577777655577888888764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.3e-12  Score=120.84  Aligned_cols=104  Identities=15%  Similarity=0.234  Sum_probs=80.6

Q ss_pred             ceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCc
Q 048826           33 KQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCL  110 (725)
Q Consensus        33 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L  110 (725)
                      +.++.++.+...+|..+    ++++++|+++++ .++.+|.  +.++++|++|++++|...+.++...+.     .++.+
T Consensus        11 ~~i~c~~~~l~~iP~~l----~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~-----~l~~l   80 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL----PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS-----NLPKL   80 (242)
T ss_dssp             SEEEEESCSCSSCCSCS----CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE-----SCTTC
T ss_pred             CEEEEeCCCCCCcCCCC----CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccc-----ccccc
Confidence            57777877778888655    468999999997 7888886  889999999999999866667654432     27788


Q ss_pred             ceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcc
Q 048826          111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQ  151 (725)
Q Consensus       111 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  151 (725)
                      ++|.+..+.++..+.    +..+..+++|+++.+.++ .++
T Consensus        81 ~~l~~~~~n~l~~~~----~~~~~~l~~L~~l~l~~~-~l~  116 (242)
T d1xwdc1          81 HEIRIEKANNLLYIN----PEAFQNLPNLQYLLISNT-GIK  116 (242)
T ss_dssp             CEEEEECCTTCCEEC----TTSEECCTTCCEEEEESC-CCC
T ss_pred             ccccccccccccccc----cccccccccccccccchh-hhc
Confidence            888888777776654    455688999999999887 444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1e-13  Score=136.67  Aligned_cols=184  Identities=14%  Similarity=0.090  Sum_probs=121.3

Q ss_pred             cCCCCccEEEecCCCCccc-ccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccc--cccccCCCCC
Q 048826          475 DNNTSLEYINISNCENLKI-LPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEA--LPKGLHNLTS  551 (725)
Q Consensus       475 ~~l~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~  551 (725)
                      ....+|++|++++|..... +...+..+++|++|++++|+.....+..+..+++|++|++++|..++.  +......+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            3456889999988654332 344567788999999998865544445556678899999998876543  2223356888


Q ss_pred             cceeecCCCCCCCCcc----cCCCcccccceecccchh-hHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccc
Q 048826          552 LQQLTIGKGGELPSLE----EDGLPTNLHSLWIEDNME-IWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVR  626 (725)
Q Consensus       552 L~~L~l~~~~~l~~~~----~~~~~~~L~~L~l~~n~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~  626 (725)
                      |++|++++|..+....    ....+++|+.|+++++.. +++....  ..+..+++|++|++++|...-......+    
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~--~l~~~~~~L~~L~L~~~~~itd~~~~~l----  196 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS--TLVRRCPNLVHLDLSDSVMLKNDCFQEF----  196 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--HHHHHCTTCSEEECTTCTTCCGGGGGGG----
T ss_pred             ccccccccccccccccchhhhcccccccchhhhccccccccccccc--ccccccccccccccccccCCCchhhhhh----
Confidence            9999999886654311    122347889999988642 2222221  2345688899999988643322222222    


Q ss_pred             cCcccCCCCCCcEEEeccCcccccc-cccccCCcCCCeEeccCC
Q 048826          627 LGTTLPLPASLTSLWISNFPNLERL-SSSIVDLQNLTSLYLLDC  669 (725)
Q Consensus       627 ~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c  669 (725)
                           ..+++|++|++++|+.+..- ...+..+|+|+.|++.+|
T Consensus       197 -----~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 -----FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             -----GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             -----cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence                 25688999999988777532 234567888999999887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5e-13  Score=131.68  Aligned_cols=205  Identities=15%  Similarity=0.201  Sum_probs=119.2

Q ss_pred             CccEEEEecccchhh-hhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCcccc--CCCCcCcCcCcee
Q 048826          455 SLKSLSVYGCSKLES-IAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESF--PEGGLLCAKLTRL  531 (725)
Q Consensus       455 ~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L  531 (725)
                      +|++|++++|.+.+. +...+..+++|++|++++|......+..+..+++|++|++++|..+++.  ......+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            477788877766544 3445667778888888777544444555666778888888877665432  2223456778888


Q ss_pred             eeccccCccc--ccccc-CCCCCcceeecCCCC-CCCCcc---cCCCcccccceecccchhhHHHHhhccccccccCCCc
Q 048826          532 TILDCKRLEA--LPKGL-HNLTSLQQLTIGKGG-ELPSLE---EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLR  604 (725)
Q Consensus       532 ~l~~~~~~~~--~~~~~-~~l~~L~~L~l~~~~-~l~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~  604 (725)
                      ++++|.....  +...+ ..+++|+.|+++++. .+....   ....+++|++|++++|..+++...   ..+..+++|+
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~---~~l~~~~~L~  203 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF---QEFFQLNYLQ  203 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG---GGGGGCTTCC
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhh---hhhcccCcCC
Confidence            8887764432  11222 234678888887763 232211   122357788888888765543322   3456778888


Q ss_pred             EEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCccc
Q 048826          605 RLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYF  675 (725)
Q Consensus       605 ~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l  675 (725)
                      +|++++|..........+         ..+++|+.|++++|-.-..+..-...+|+|+   + +|+.++.+
T Consensus       204 ~L~L~~C~~i~~~~l~~L---------~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         204 HLSLSRCYDIIPETLLEL---------GEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             EEECTTCTTCCGGGGGGG---------GGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---E-SCCCSCCT
T ss_pred             EEECCCCCCCChHHHHHH---------hcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---c-cCccCCCC
Confidence            888888643322211112         2467888888888622222222123456655   3 34555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.4e-11  Score=116.67  Aligned_cols=204  Identities=21%  Similarity=0.214  Sum_probs=115.4

Q ss_pred             CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCccccC-CCCcCcCcCcee
Q 048826          454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNLESFP-EGGLLCAKLTRL  531 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L  531 (725)
                      +++++|++++|.+....+..|.++++|++|++++|.....++ ..+.++++++++.+..++.+..++ ..+..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            358999999987766555678889999999999877666554 346678889999887765555444 456778899999


Q ss_pred             eeccccCcccccc--ccCCCCCcceeecCCCCCCCCccc---CCCcccccceecccchhhHHHHhhccccccccCCCcEE
Q 048826          532 TILDCKRLEALPK--GLHNLTSLQQLTIGKGGELPSLEE---DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRL  606 (725)
Q Consensus       532 ~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L  606 (725)
                      ++.+|... ..+.  .+..+..+..+..+++ .+..++.   .+....++.|++.+|+...  +   +......++++++
T Consensus       109 ~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~-~l~~i~~~~~~~~~~~l~~L~l~~n~l~~--i---~~~~~~~~~l~~~  181 (242)
T d1xwdc1         109 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQE--I---HNCAFNGTQLDEL  181 (242)
T ss_dssp             EEESCCCC-SCCCCTTTCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCE--E---CTTTTTTCCEEEE
T ss_pred             ccchhhhc-cccccccccccccccccccccc-ccccccccccccccccceeeecccccccc--c---ccccccchhhhcc
Confidence            99888643 3322  2234444444444443 3333322   2223466667776664321  1   1122233444444


Q ss_pred             EeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccC
Q 048826          607 TIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFP  676 (725)
Q Consensus       607 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~  676 (725)
                      .... .+.+..+|...        |..+++|+.|++++| .++.+|.  ..|.+|..|..-++..++.+|
T Consensus       182 ~~l~-~n~l~~l~~~~--------f~~l~~L~~L~Ls~N-~l~~l~~--~~~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         182 NLSD-NNNLEELPNDV--------FHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             ECTT-CTTCCCCCTTT--------TTTSCCCSEEECTTS-CCCCCCS--SSCTTCCEEESSSEESSSCSC
T ss_pred             cccc-ccccccccHHH--------hcCCCCCCEEECCCC-cCCccCH--HHHcCCcccccCcCCCCCcCC
Confidence            4333 23444555432        224566666666663 3555554  233333333333333344443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.27  E-value=8.9e-12  Score=116.52  Aligned_cols=164  Identities=20%  Similarity=0.277  Sum_probs=87.9

Q ss_pred             CCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceee
Q 048826          477 NTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLT  556 (725)
Q Consensus       477 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  556 (725)
                      +.+|+.|++++| .++.++ .+..+++|++|++++|. +..++ .+..+++|++|++++|. ++.++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n~-i~~l~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK-LTDIK-PLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCcc-ccCcc-ccccCcccccccccccc-ccccc-cccccccccccc
Confidence            456777777774 344443 36667777777777753 44444 24556777777777775 34454 366677777777


Q ss_pred             cCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCC
Q 048826          557 IGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPAS  636 (725)
Q Consensus       557 l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  636 (725)
                      +++|.. ..++....++.++.+++++|....      ...+..+++|+.++++++  .+..++. +         ..+++
T Consensus       119 l~~~~~-~~~~~l~~l~~l~~l~~~~n~l~~------~~~~~~l~~L~~l~l~~n--~l~~i~~-l---------~~l~~  179 (210)
T d1h6ta2         119 LEHNGI-SDINGLVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDN--QISDIVP-L---------AGLTK  179 (210)
T ss_dssp             CTTSCC-CCCGGGGGCTTCCEEECCSSCCCC------CGGGGGCTTCSEEECCSS--CCCCCGG-G---------TTCTT
T ss_pred             cccccc-cccccccccccccccccccccccc------cccccccccccccccccc--ccccccc-c---------cCCCC
Confidence            777632 233333344566666666654321      012334555555555552  2222221 1         13455


Q ss_pred             CcEEEeccCcccccccccccCCcCCCeEecc
Q 048826          637 LTSLWISNFPNLERLSSSIVDLQNLTSLYLL  667 (725)
Q Consensus       637 L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~  667 (725)
                      |++|++++| .++.++ .+..+++|+.|+++
T Consensus       180 L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         180 LQNLYLSKN-HISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CCEEECCSS-CCCBCG-GGTTCTTCSEEEEE
T ss_pred             CCEEECCCC-CCCCCh-hhcCCCCCCEEEcc
Confidence            555555553 344444 24455555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.27  E-value=1.3e-11  Score=115.46  Aligned_cols=164  Identities=20%  Similarity=0.235  Sum_probs=88.5

Q ss_pred             CCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceec
Q 048826          501 LRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWI  580 (725)
Q Consensus       501 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l  580 (725)
                      +.+|++|++++|. ++.++ ++..+++|++|++++|. .+.++ .+..+++|++|++++| .++.++....+++|+.|++
T Consensus        45 L~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~L~~n~-i~~l~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNK-LTDIK-PLANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCC-CCCch-hHhhCCCCCEEeCCCcc-ccCcc-ccccCccccccccccc-ccccccccccccccccccc
Confidence            4566666666643 33333 34556666666666665 33333 2456666666666666 3444444444566666666


Q ss_pred             ccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcC
Q 048826          581 EDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQN  660 (725)
Q Consensus       581 ~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~  660 (725)
                      .+|....  +    ..+..+++|+.++++++  .+...+. .         ..+++|+.+++++| .+..++. +..+++
T Consensus       120 ~~~~~~~--~----~~l~~l~~l~~l~~~~n--~l~~~~~-~---------~~l~~L~~l~l~~n-~l~~i~~-l~~l~~  179 (210)
T d1h6ta2         120 EHNGISD--I----NGLVHLPQLESLYLGNN--KITDITV-L---------SRLTKLDTLSLEDN-QISDIVP-LAGLTK  179 (210)
T ss_dssp             TTSCCCC--C----GGGGGCTTCCEEECCSS--CCCCCGG-G---------GGCTTCSEEECCSS-CCCCCGG-GTTCTT
T ss_pred             ccccccc--c----ccccccccccccccccc--ccccccc-c---------cccccccccccccc-ccccccc-ccCCCC
Confidence            6664321  1    23455666666666653  2211111 1         14566666666664 3455443 456666


Q ss_pred             CCeEeccCCCCCcccCCCCCcccccEEEec
Q 048826          661 LTSLYLLDCPKLRYFPEKGLPSSLLQLHIY  690 (725)
Q Consensus       661 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~  690 (725)
                      |++|++++| .++.++...-+++|++|+++
T Consensus       180 L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         180 LQNLYLSKN-HISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CCEEECCSS-CCCBCGGGTTCTTCSEEEEE
T ss_pred             CCEEECCCC-CCCCChhhcCCCCCCEEEcc
Confidence            666666664 45555543445666666664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=1.2e-11  Score=114.67  Aligned_cols=102  Identities=20%  Similarity=0.207  Sum_probs=55.9

Q ss_pred             CCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCccee
Q 048826          476 NNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQL  555 (725)
Q Consensus       476 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  555 (725)
                      .++++++|++++| .++.+ .++..+++|++|++++|. +..++. +..+++|++|++++|.. ..++ .+..++.|+.|
T Consensus        38 ~l~~l~~L~l~~~-~i~~l-~~l~~l~nL~~L~Ls~N~-l~~~~~-l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCC-CCCCc-cccccCCCcCcCcccccc-ccCccc-ccCCccccccccccccc-cccc-ccccccccccc
Confidence            3456777777774 34444 235566777777777653 344432 55566677777766653 2333 35566666666


Q ss_pred             ecCCCCCCCCcccCCCcccccceecccch
Q 048826          556 TIGKGGELPSLEEDGLPTNLHSLWIEDNM  584 (725)
Q Consensus       556 ~l~~~~~l~~~~~~~~~~~L~~L~l~~n~  584 (725)
                      ++++|.... ......+++|+.|++++|.
T Consensus       112 ~l~~~~~~~-~~~~~~l~~L~~L~l~~n~  139 (199)
T d2omxa2         112 TLFNNQITD-IDPLKNLTNLNRLELSSNT  139 (199)
T ss_dssp             ECCSSCCCC-CGGGTTCTTCSEEECCSSC
T ss_pred             ccccccccc-ccccchhhhhHHhhhhhhh
Confidence            666653322 2223334555555555553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=2.3e-11  Score=112.68  Aligned_cols=79  Identities=24%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             CCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceec
Q 048826          501 LRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWI  580 (725)
Q Consensus       501 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l  580 (725)
                      ++++++|++++|. +..+. ++..+++|++|++++|. ++.++. +..+++|++|++++|. +..++....+++|+.|++
T Consensus        39 l~~l~~L~l~~~~-i~~l~-~l~~l~nL~~L~Ls~N~-l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLG-IKSID-GVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCC-CCCcc-ccccCCCcCcCcccccc-ccCccc-ccCCcccccccccccc-cccccccccccccccccc
Confidence            3444455554432 22222 23344455555555543 222222 4444555555554442 222222333345555555


Q ss_pred             ccch
Q 048826          581 EDNM  584 (725)
Q Consensus       581 ~~n~  584 (725)
                      ++|.
T Consensus       114 ~~~~  117 (199)
T d2omxa2         114 FNNQ  117 (199)
T ss_dssp             CSSC
T ss_pred             cccc
Confidence            4443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.2e-13  Score=143.62  Aligned_cols=114  Identities=17%  Similarity=0.195  Sum_probs=69.0

Q ss_pred             CCcceEEEeccCCCCCCCCcC-CCCCCCccEEEEecCCCCCc-----CCC-CCCCCccceeeecCcccceeccccccCCC
Q 048826           30 KNLKQFCISGYGGTKFPTWLG-DSSFSNLVILKFEDCGMCTT-----WPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGND  102 (725)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~-----l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~  102 (725)
                      .+|++|+|+++..... .|.. .+.++++++|+|++| .+++     +.. +..+++|++|+|++|. ++..+.......
T Consensus         2 ~~l~~ld~~~~~i~~~-~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~   78 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEEESCCCCHH-HHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred             CCCCEEEeeCCcCChH-HHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHH
Confidence            4689999999888652 1111 123789999999999 5653     233 6788999999999886 543221111110


Q ss_pred             CCCCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccC
Q 048826          103 SSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRC  147 (725)
Q Consensus       103 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c  147 (725)
                      -.....+|++|+++++ .+++.....-...+..+++|++|++++|
T Consensus        79 l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             TCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             HhcCCCCCCEEECCCC-Cccccccccccchhhccccccccccccc
Confidence            0011346888888886 3443210000123456778888888776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.3e-11  Score=106.16  Aligned_cols=112  Identities=15%  Similarity=0.174  Sum_probs=89.7

Q ss_pred             ccCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCC
Q 048826           24 DMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDS  103 (725)
Q Consensus        24 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~  103 (725)
                      ..+..+.++++|+|+++++..++.....  +++|++|++++| .+.+++.++.+++|++|++++|. ++.++..++.   
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~--l~~L~~L~Ls~N-~i~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~~~---   84 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVIENLGAT--LDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQ---   84 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGG--TTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCHHH---
T ss_pred             HhccCcCcCcEEECCCCCCCccCccccc--cccCCEEECCCC-CCCccCCcccCcchhhhhccccc-ccCCCccccc---
Confidence            3466778899999999999999865543  899999999998 79999889999999999999998 8888765432   


Q ss_pred             CCCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCc
Q 048826          104 STPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCS  148 (725)
Q Consensus       104 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~  148 (725)
                        .+++|++|+++++ +++++..   ...+..+++|++|++++|+
T Consensus        85 --~l~~L~~L~L~~N-~i~~~~~---l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          85 --ALPDLTELILTNN-SLVELGD---LDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             --HCTTCCEEECCSC-CCCCGGG---GGGGGGCTTCCEEECCSSG
T ss_pred             --cccccccceeccc-ccccccc---ccccccccccchhhcCCCc
Confidence              2889999999985 5665531   2345678888888888873

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.06  E-value=7.5e-11  Score=108.39  Aligned_cols=109  Identities=15%  Similarity=0.090  Sum_probs=87.9

Q ss_pred             CCccEEEEecccchhhh-hhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826          454 PSLKSLSVYGCSKLESI-AERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT  532 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  532 (725)
                      +++++|+|++|.+...+ +..|..+++|+.|++++|......+..+..+++|++|++++|.....-+..+..+++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            46999999999887644 56678899999999999776666677788899999999999754444455678899999999


Q ss_pred             eccccCccccccccCCCCCcceeecCCCCC
Q 048826          533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGE  562 (725)
Q Consensus       533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  562 (725)
                      +++|......+..|..+++|++|++++|+.
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cCCccccccCHHHhcCCccccccccccccc
Confidence            999986554556788999999999999853

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.9e-11  Score=126.29  Aligned_cols=110  Identities=15%  Similarity=0.165  Sum_probs=60.0

Q ss_pred             ccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc----c
Q 048826          229 KLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV----K  304 (725)
Q Consensus       229 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~----~  304 (725)
                      +|++|.+.+..-..   .....++..++++|+|+|++| .++..........+...    ++|++|+|++|.+..    .
T Consensus         3 ~l~~ld~~~~~i~~---~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~----~~L~~LdLs~N~i~~~~~~~   74 (460)
T d1z7xw1           3 DIQSLDIQCEELSD---ARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVN----PALAELNLRSNELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEESCCCCH---HHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTC----TTCCEEECTTCCCHHHHHHH
T ss_pred             CCCEEEeeCCcCCh---HHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcC----CCCCEEECcCCcCChHHHHH
Confidence            34555554332222   233445577788888888887 34433222222223333    678888888776532    2


Q ss_pred             cccccC-CCCCCcEEEeecCCCccccC------CCCCCCCCceEEeeccC
Q 048826          305 LPQSSL-SLSSLREIEIYKCSSLVSFP------EVALPSKLKKIQFRECD  347 (725)
Q Consensus       305 ~~~~~~-~l~~L~~L~L~~~~~~~~~~------~~~~l~~L~~L~l~~~~  347 (725)
                      +...+. ...+|++|++++|. ++...      .....++|++|++++|.
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence            223332 23468888888775 33321      23446777888877765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4.2e-10  Score=99.61  Aligned_cols=128  Identities=17%  Similarity=0.164  Sum_probs=64.2

Q ss_pred             cCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccc-cCCCCCcc
Q 048826          475 DNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKG-LHNLTSLQ  553 (725)
Q Consensus       475 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~  553 (725)
                      .+..++++|++++| .++.++.....+++|+.|++++|. +..++ .+..+++|++|++++|.. ..++.. +..+++|+
T Consensus        15 ~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~-~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSC-CCEEC-CCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCC-CCCccCccccccccCCEEECCCCC-CCccC-CcccCcchhhhhcccccc-cCCCccccccccccc
Confidence            34445566666653 344444444455666666666643 33443 345556666666666653 333332 34566666


Q ss_pred             eeecCCCCCCCCc---ccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEe
Q 048826          554 QLTIGKGGELPSL---EEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI  608 (725)
Q Consensus       554 ~L~l~~~~~l~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l  608 (725)
                      +|++++|. +..+   .....+++|++|++++|+....... ....+..+++|+.|+-
T Consensus        91 ~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~-r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          91 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETT
T ss_pred             cceecccc-ccccccccccccccccchhhcCCCccccccch-HHHHHHHCCCcCeeCC
Confidence            66666663 2222   2233346666666666654221100 0123555667776653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=1.2e-09  Score=91.71  Aligned_cols=99  Identities=20%  Similarity=0.218  Sum_probs=46.9

Q ss_pred             EEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCC
Q 048826          482 YINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGG  561 (725)
Q Consensus       482 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  561 (725)
                      .|++++| .++.++ .+.++++|++|++++| .++.+|..+..+++|+.|++++|. ++.++ .+..+++|++|++++|.
T Consensus         2 ~L~Ls~n-~l~~l~-~l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHK-DLTVLC-HLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTS-CCSSCC-CGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCC-CCCCCc-ccccCCCCCEEECCCC-ccCcchhhhhhhhccccccccccc-ccccC-ccccccccCeEECCCCc
Confidence            4455552 333343 2445555555555553 334455445555555555555554 23333 35555666666666552


Q ss_pred             C--CCCcccCCCcccccceecccchh
Q 048826          562 E--LPSLEEDGLPTNLHSLWIEDNME  585 (725)
Q Consensus       562 ~--l~~~~~~~~~~~L~~L~l~~n~~  585 (725)
                      .  +..+.....+++|++|++++|+.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcC
Confidence            1  11111223335555555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=6.6e-09  Score=86.98  Aligned_cols=101  Identities=18%  Similarity=0.136  Sum_probs=68.8

Q ss_pred             cEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCC
Q 048826          259 KRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKL  338 (725)
Q Consensus       259 ~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L  338 (725)
                      |.|++++ ..++.++.      +..+    ++|++|++++|.+ ..+|+.++.+++|++|++++|. ++.++.+..+++|
T Consensus         1 R~L~Ls~-n~l~~l~~------l~~l----~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L   67 (124)
T d1dcea3           1 RVLHLAH-KDLTVLCH------LEQL----LLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA-LENVDGVANLPRL   67 (124)
T ss_dssp             SEEECTT-SCCSSCCC------GGGG----TTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSC
T ss_pred             CEEEcCC-CCCCCCcc------cccC----CCCCEEECCCCcc-Ccchhhhhhhhccccccccccc-ccccCcccccccc
Confidence            5677777 35665532      3344    7888888888776 4677778888888888888875 5666667778888


Q ss_pred             ceEEeeccCcccccccccccCCCCcccEEEeeccC
Q 048826          339 KKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCH  373 (725)
Q Consensus       339 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  373 (725)
                      +.|++++|. +..++.......+++|+.|++.+++
T Consensus        68 ~~L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          68 QELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CeEECCCCc-cCCCCCchhhcCCCCCCEEECCCCc
Confidence            888888876 4444332222345778888887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.77  E-value=9.4e-09  Score=93.95  Aligned_cols=126  Identities=15%  Similarity=0.074  Sum_probs=83.3

Q ss_pred             ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccc-cccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKIL-PSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      .+.++.+++... .+|..+  .+++++|++++|.....+ +..+.++++|++|++++|......+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            345555555433 445433  257888888886554434 3456778888888888877666666677778888888888


Q ss_pred             cccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchh
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNME  585 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~  585 (725)
                      +|......+..|..+++|++|+|++| .+..++.  ...+++|++|++++|+.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccccCHHHHhCCCcccccccCCc-cccccCHHHhcCCccccccccccccc
Confidence            88754444556788888888888888 3444433  23346777777777653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.62  E-value=4.7e-10  Score=103.05  Aligned_cols=146  Identities=15%  Similarity=0.236  Sum_probs=93.7

Q ss_pred             ccEEEEecc-cchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826          456 LKSLSVYGC-SKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL  534 (725)
Q Consensus       456 L~~L~L~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  534 (725)
                      ++.+++.+. ...+.++..+..+++|++|++++| .++.++ .+..+++|++|++++|. ++.++.....+++|+.|+++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECS
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECccc-CCCCcc-cccCCccccChhhcccc-cccccccccccccccccccc
Confidence            455555542 223445566778888888888884 456664 47778888888888864 56666555556678888888


Q ss_pred             cccCccccccccCCCCCcceeecCCCCCCCCc---ccCCCcccccceecccchhhHHHHhhc------cccccccCCCcE
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSL---EEDGLPTNLHSLWIEDNMEIWKSMIER------GRGFHRFSSLRR  605 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~------~~~~~~l~~L~~  605 (725)
                      +|. ++.++ .+..+++|+.|++++|. +..+   .....+++|+.|++++|+.........      ...+..+++|+.
T Consensus       102 ~N~-i~~l~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~  178 (198)
T d1m9la_         102 YNQ-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             EEE-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCE
T ss_pred             ccc-ccccc-cccccccccccccccch-hccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCE
Confidence            886 44443 46777888888888873 3333   234456888888888887543211100      012456777777


Q ss_pred             EE
Q 048826          606 LT  607 (725)
Q Consensus       606 L~  607 (725)
                      ||
T Consensus       179 LD  180 (198)
T d1m9la_         179 LD  180 (198)
T ss_dssp             ES
T ss_pred             eC
Confidence            65

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.55  E-value=1.3e-08  Score=102.59  Aligned_cols=68  Identities=15%  Similarity=0.049  Sum_probs=37.6

Q ss_pred             hhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc----------ccccccCCCCCCcEEEee
Q 048826          252 LQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV----------KLPQSSLSLSSLREIEIY  321 (725)
Q Consensus       252 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~----------~~~~~~~~l~~L~~L~L~  321 (725)
                      +.....|+.|+++++ .+..-........+...    ++|+.|+++++....          .+...+..+++|++|+++
T Consensus        27 L~~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~----~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGN-TIGTEAARWLSENIASK----KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTC----TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HhhCCCCCEEECcCC-cCCHHHHHHHHHHHHhC----CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            466788888888874 34332222222222222    678888887654321          122234556677777777


Q ss_pred             cCC
Q 048826          322 KCS  324 (725)
Q Consensus       322 ~~~  324 (725)
                      +|.
T Consensus       102 ~n~  104 (344)
T d2ca6a1         102 DNA  104 (344)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.52  E-value=1.1e-09  Score=100.48  Aligned_cols=102  Identities=15%  Similarity=0.178  Sum_probs=53.4

Q ss_pred             CccEEEecCC-CCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeec
Q 048826          479 SLEYINISNC-ENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTI  557 (725)
Q Consensus       479 ~L~~L~l~~~-~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  557 (725)
                      .++.+++.+. ..+..++..+..+++|++|++++|. ++.++ .+..+++|+.|++++|. ++.++.....+++|++|++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEEC
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccC-CCCcc-cccCCccccChhhcccc-ccccccccccccccccccc
Confidence            4455555432 2344555556667777777777643 44554 35556667777776665 3444443334445666666


Q ss_pred             CCCCCCCCcccCCCcccccceecccch
Q 048826          558 GKGGELPSLEEDGLPTNLHSLWIEDNM  584 (725)
Q Consensus       558 ~~~~~l~~~~~~~~~~~L~~L~l~~n~  584 (725)
                      ++| .+..++....+++|++|++++|.
T Consensus       101 ~~N-~i~~l~~~~~l~~L~~L~L~~N~  126 (198)
T d1m9la_         101 SYN-QIASLSGIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             SEE-ECCCHHHHHHHHHSSEEEESEEE
T ss_pred             ccc-cccccccccccccccccccccch
Confidence            655 23333322333445555554443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.3e-07  Score=78.50  Aligned_cols=101  Identities=26%  Similarity=0.305  Sum_probs=47.5

Q ss_pred             cEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCcccc-CCCCcCcCcCceeeec
Q 048826          457 KSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNLESF-PEGGLLCAKLTRLTIL  534 (725)
Q Consensus       457 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~  534 (725)
                      ..++.+++... ..|..+..+++|++|++++++.++.++ ..+.++++|+.|++++|. ++.+ +..+..+++|++|+++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceecc
Confidence            34444443322 234445555555555555444444443 234555555555555543 2333 3334455555555555


Q ss_pred             cccCccccccccCCCCCcceeecCCC
Q 048826          535 DCKRLEALPKGLHNLTSLQQLTIGKG  560 (725)
Q Consensus       535 ~~~~~~~~~~~~~~l~~L~~L~l~~~  560 (725)
                      +|. ++.+|.......+|++|++++|
T Consensus        89 ~N~-l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          89 FNA-LESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             SSC-CSCCCSTTTCSCCCCEEECCSS
T ss_pred             CCC-CcccChhhhccccccccccCCC
Confidence            555 2334433323334555555555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.38  E-value=2.8e-08  Score=100.20  Aligned_cols=229  Identities=14%  Similarity=0.066  Sum_probs=141.1

Q ss_pred             CCccEEEEecccchhhh----hhhhcCCCCccEEEecCCCCcc----------cccccccCCCcccEEEeccCCCccc--
Q 048826          454 PSLKSLSVYGCSKLESI----AERLDNNTSLEYINISNCENLK----------ILPSGLHNLRQLQEITIQRCGNLES--  517 (725)
Q Consensus       454 ~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~----------~l~~~~~~l~~L~~L~l~~~~~~~~--  517 (725)
                      ..++.|+|++|.+....    ...+...++|+.++++++..-.          .+...+..+++|++|++++|.....  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            46999999999775543    4456678999999998753211          1223345678999999998754322  


Q ss_pred             --cCCCCcCcCcCceeeeccccCccc----ccc---------ccCCCCCcceeecCCCCCCCC----cc-cCCCcccccc
Q 048826          518 --FPEGGLLCAKLTRLTILDCKRLEA----LPK---------GLHNLTSLQQLTIGKGGELPS----LE-EDGLPTNLHS  577 (725)
Q Consensus       518 --~~~~~~~l~~L~~L~l~~~~~~~~----~~~---------~~~~l~~L~~L~l~~~~~l~~----~~-~~~~~~~L~~  577 (725)
                        +...+..+++|+.|++++|.....    +..         .....+.|+.+.+++|..-..    +. .....++|++
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              233344567999999999874221    000         113567899999988742211    10 1123478999


Q ss_pred             eecccchhhHHHHhh-ccccccccCCCcEEEeecCCCCC---ccCCCCCcccccCcccCCCCCCcEEEeccCccccc---
Q 048826          578 LWIEDNMEIWKSMIE-RGRGFHRFSSLRRLTIINCDDDM---VSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLER---  650 (725)
Q Consensus       578 L~l~~n~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~---~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---  650 (725)
                      |++++|......+.. ....+..+++|+.|++++|....   ..+...         +...++|++|++++|. +..   
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~---------l~~~~~L~~L~Ls~n~-i~~~g~  260 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA---------LKSWPNLRELGLNDCL-LSARGA  260 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH---------GGGCTTCCEEECTTCC-CCHHHH
T ss_pred             cccccccccccccccchhhhhcchhhhccccccccccccccccccccc---------ccccccchhhhhhcCc-cCchhh
Confidence            999998754322211 12456778899999998853211   111111         2356889999999975 432   


Q ss_pred             --cccccc--CCcCCCeEeccCCCCCccc-----CCC--CCcccccEEEecCCc
Q 048826          651 --LSSSIV--DLQNLTSLYLLDCPKLRYF-----PEK--GLPSSLLQLHIYRCP  693 (725)
Q Consensus       651 --i~~~~~--~~~~L~~L~l~~c~~l~~l-----~~~--~~~~~L~~L~l~~c~  693 (725)
                        +...+.  ..+.|++|++++|. +..-     ...  .-.+.|++|+++++.
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence              222232  34679999999964 4331     110  013579999998765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=7.4e-07  Score=77.57  Aligned_cols=106  Identities=18%  Similarity=0.110  Sum_probs=74.1

Q ss_pred             CCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCC-CCcCcCcCceeeeccccCccccccccCCCCCcceee
Q 048826          478 TSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLT  556 (725)
Q Consensus       478 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  556 (725)
                      ...+.++.++ ......|..+..+++|++|++.+++.++.++. .+..+++|+.|++++|.....-+..|..+++|++|+
T Consensus         8 ~~~~~l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecC-CCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            3455677766 45555677777888888888887777777764 467788888888888874443455678888888888


Q ss_pred             cCCCCCCCCcccC-CCcccccceecccchh
Q 048826          557 IGKGGELPSLEED-GLPTNLHSLWIEDNME  585 (725)
Q Consensus       557 l~~~~~l~~~~~~-~~~~~L~~L~l~~n~~  585 (725)
                      |++|. +..++.. ....+|+.|+|++|+.
T Consensus        87 Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          87 LSFNA-LESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccCCC-CcccChhhhccccccccccCCCcc
Confidence            88884 4444332 2235788888888854

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00016  Score=62.67  Aligned_cols=85  Identities=20%  Similarity=0.134  Sum_probs=47.9

Q ss_pred             hhhhhcCCCCccEEEecCCCCcccc---cccccCCCcccEEEeccCCCccccCC-CCcCcCcCceeeeccccCcccccc-
Q 048826          470 IAERLDNNTSLEYINISNCENLKIL---PSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTILDCKRLEALPK-  544 (725)
Q Consensus       470 ~~~~~~~l~~L~~L~l~~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-  544 (725)
                      +......+++|++|++++|. ++.+   +..+..+++|+.|++++|. ++.++. ......+|+.+++++|+....... 
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred             hHHHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcccc
Confidence            34444567788888888854 3333   3334567777777777743 333332 122334677777777765433221 


Q ss_pred             ------ccCCCCCcceee
Q 048826          545 ------GLHNLTSLQQLT  556 (725)
Q Consensus       545 ------~~~~l~~L~~L~  556 (725)
                            .+..+|+|+.||
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence                  234566666664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00047  Score=59.63  Aligned_cols=67  Identities=18%  Similarity=0.069  Sum_probs=33.0

Q ss_pred             hhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcccccc-ccCCCCCCcEEEeecCC
Q 048826          250 ELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIEIYKCS  324 (725)
Q Consensus       250 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~  324 (725)
                      ..+..+++|++|+++++ .++.+..-.  ..+..+    ++|+.|+|++|.+.. +++ ......+|+.|++++|+
T Consensus        59 ~~~~~~~~L~~L~Ls~N-~i~~l~~~~--~~~~~l----~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          59 IIEENIPELLSLNLSNN-RLYRLDDMS--SIVQKA----PNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HHHHHCTTCCCCCCCSS-CCCCCSGGG--THHHHS----TTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTST
T ss_pred             HHHHhCCCCCEeeCCCc-cccCCchhH--HHHhhC----CcccccccccCcccc-chhhhhhhccccceeecCCCC
Confidence            34455677777777763 455443210  112222    566666666666532 222 12223356666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.10  E-value=0.0033  Score=54.33  Aligned_cols=16  Identities=6%  Similarity=0.005  Sum_probs=7.7

Q ss_pred             hccCCCcccEEEecCC
Q 048826          175 SITCLPALCKLKIYGC  190 (725)
Q Consensus       175 ~~~~~~~L~~L~l~~~  190 (725)
                      .+...+.|++|++++|
T Consensus        39 ~L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_          39 AACNSKHIEKFSLANT   54 (167)
T ss_dssp             HHTTCSCCCEEECTTS
T ss_pred             HHhhCCccceeecccc
Confidence            3444445555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.47  E-value=0.0054  Score=52.89  Aligned_cols=70  Identities=16%  Similarity=0.062  Sum_probs=34.8

Q ss_pred             hhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc----ccccccCCCCCCcEEEeecCC
Q 048826          251 LLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV----KLPQSSLSLSSLREIEIYKCS  324 (725)
Q Consensus       251 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~  324 (725)
                      +....+.|++|+|+++..++.-....+...+..-    +.|++|+|++|.+..    .+...+...+.|++|+|++|.
T Consensus        10 l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n----~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          10 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNS----KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC----SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhC----CccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            3344567777777665444332211111222222    567777777666532    222234445666666666664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.93  E-value=0.008  Score=51.73  Aligned_cols=69  Identities=4%  Similarity=0.003  Sum_probs=32.1

Q ss_pred             hhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc----ccccccCCCCCCcEEEeecCC
Q 048826          252 LQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV----KLPQSSLSLSSLREIEIYKCS  324 (725)
Q Consensus       252 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~  324 (725)
                      ....++|++|+++++..++.-....+...+...    ++|++|+|++|.+..    .+...+...++++.+++++|.
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n----~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN----TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC----CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcC----CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            344566666666654444332221112222222    456666666665432    222334445566666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.73  E-value=0.041  Score=46.98  Aligned_cols=92  Identities=22%  Similarity=0.148  Sum_probs=60.7

Q ss_pred             CCccceeeeccccchhH-HhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc--
Q 048826          227 LPKLEELEINDMKEQTY-IWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV--  303 (725)
Q Consensus       227 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~--  303 (725)
                      -+.|++|.+.+...... ........+...++|++|++++| .++.-........+...    +.++.+++++|....  
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~----~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVN----NTLKSLNVESNFISGSG   90 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHC----SSCCEEECCSSCCCHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhc----ccchhhhhccccccchh
Confidence            57889998887654432 11122333467899999999997 55543333333334333    899999999988744  


Q ss_pred             --ccccccCCCCCCcEEEeecC
Q 048826          304 --KLPQSSLSLSSLREIEIYKC  323 (725)
Q Consensus       304 --~~~~~~~~l~~L~~L~L~~~  323 (725)
                        .+...+...++|+.++|+.+
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCC
T ss_pred             HHHHHHHHHhCccccEEeeccC
Confidence              34456777888988777654